Citrus Sinensis ID: 016668
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 385 | 2.2.26 [Sep-21-2011] | |||||||
| P34899 | 518 | Serine hydroxymethyltrans | N/A | no | 0.758 | 0.563 | 0.686 | 1e-123 | |
| Q9SZJ5 | 517 | Serine hydroxymethyltrans | no | no | 0.838 | 0.624 | 0.625 | 1e-123 | |
| P50433 | 518 | Serine hydroxymethyltrans | N/A | no | 0.758 | 0.563 | 0.68 | 1e-122 | |
| P49358 | 517 | Serine hydroxymethyltrans | N/A | no | 0.755 | 0.562 | 0.687 | 1e-121 | |
| P49357 | 517 | Serine hydroxymethyltrans | N/A | no | 0.758 | 0.564 | 0.68 | 1e-121 | |
| Q54Z26 | 457 | Serine hydroxymethyltrans | yes | no | 0.784 | 0.660 | 0.651 | 1e-118 | |
| P34898 | 480 | Serine hydroxymethyltrans | N/A | no | 0.784 | 0.629 | 0.646 | 1e-116 | |
| O13426 | 470 | Serine hydroxymethyltrans | N/A | no | 0.768 | 0.629 | 0.642 | 1e-115 | |
| Q54EW1 | 481 | Serine hydroxymethyltrans | no | no | 0.776 | 0.621 | 0.628 | 1e-115 | |
| O13972 | 467 | Probable serine hydroxyme | yes | no | 0.761 | 0.627 | 0.653 | 1e-115 |
| >sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 206/300 (68%), Positives = 238/300 (79%), Gaps = 8/300 (2%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
DPE+ +II EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60 DPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D ETLCQKRAL AF LD KWGVNVQPLSGSP+NF+VYTA+LKPHDRIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 179
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
SHG+ T +++S SI+FE+MPYRLDESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
DY R+R++ D A+L+ DMAHISGLVAA V+ PF Y DVVTTTTHKSLRGPRG MIFF
Sbjct: 240 DYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFF 299
Query: 327 KK--------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378
+K + + E IN AVFPGLQGGPHNHTI GLAV LK A +PE++ YQ +
Sbjct: 300 RKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQ 359
|
Interconversion of serine and glycine. Pisum sativum (taxid: 3888) EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1 |
| >sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/342 (62%), Positives = 252/342 (73%), Gaps = 19/342 (5%)
Query: 46 CRCSSIEGSLVTGRPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSL 105
C SS+ V + S V+ P ++ L E DPE+ +II EK RQ+K L
Sbjct: 27 CYMSSLPSEAVDEKERSRVTWP---------KQLNAPLEEVDPEIADIIEHEKARQWKGL 77
Query: 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE 165
ELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYID ETLCQKRAL AF LD
Sbjct: 78 ELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDP 137
Query: 166 NKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225
KWGVNVQPLSGSPANF VYTA+LKPH+RIM LDLPHGGHLSHG+ T +++S SI+FE
Sbjct: 138 EKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFE 197
Query: 226 SMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMD 285
+MPYRLDESTG +DYD +EK+A LFRPKLI+AGASAY R +DY R+R++ + A+++ D
Sbjct: 198 TMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLAD 257
Query: 286 MAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK---------DPVLGVEL 336
MAHISGLVAA+V+ PF Y DVVTTTTHKSLRGPRG MIFF+K VL +
Sbjct: 258 MAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVL-YDF 316
Query: 337 ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378
E IN AVFPGLQGGPHNHTI GLAV LK A + E+K YQ +
Sbjct: 317 EDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQ 358
|
Interconversion of serine and glycine. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P50433|GLYM_SOLTU Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/300 (68%), Positives = 238/300 (79%), Gaps = 8/300 (2%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
DPE+ +II EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D ETLCQKRAL AF LD KWGVNVQPLSGSPANF+VYTA+LKPH+RIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHL 179
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
SHG+ T +++S SI+FE+MPYRLDESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
DY R+R++ + A+L+ DMAHISGLVAA V+ PF Y DVVTTTTHKSLRGPRG MIF+
Sbjct: 240 DYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFY 299
Query: 327 KK--------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378
+K + + E IN AVFPGLQGGPHNHTI GLAV LK A +PE++ YQ +
Sbjct: 300 RKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQ 359
|
Interconversion of serine and glycine. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/301 (68%), Positives = 236/301 (78%), Gaps = 10/301 (3%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
DPE+ +II EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60 DPEIADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D ETLCQKRAL AF LD KWGVNVQPLSGSPANF VYTA+LK HDRIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHL 179
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
SHG+ T +++S SI+FE+MPYRL+ESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
DY R+R++ D A+L+ DMAHISGLVAA V+ PF Y DVVTTTTHKSLRGPRG MIFF
Sbjct: 240 DYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFF 299
Query: 327 KK---------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377
+K VL + E IN AVFPGLQGGPHNHTI GLAV LK A + E+K YQ
Sbjct: 300 RKGVKEVNKQGKEVL-YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQE 358
Query: 378 K 378
+
Sbjct: 359 Q 359
|
Interconversion of serine and glycine. Flaveria pringlei (taxid: 4226) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/300 (68%), Positives = 235/300 (78%), Gaps = 8/300 (2%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
DPE+ +II EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYI
Sbjct: 60 DPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 119
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D ETLCQKRAL AF LD KWGVNVQPLSGSPANF VYTA+LK HDRIM LDLPHGGHL
Sbjct: 120 DMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHL 179
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
SHG+ T +++S SI+FE+MPYRL+ESTG +DYD LEK+A LFRPKLI+AGASAY R +
Sbjct: 180 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 239
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
DY R+R++ D A+++ DMAHISGLVAA V+ PF Y DVVTTTTHKSLRGPRG MIFF
Sbjct: 240 DYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFF 299
Query: 327 KK--------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378
+K + + E IN AVFPGLQGGPHNHTI GLAV LK A + E+K YQ +
Sbjct: 300 RKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQ 359
|
Interconversion of serine and glycine. Flaveria pringlei (taxid: 4226) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|Q54Z26|GLYC1_DICDI Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/313 (65%), Positives = 244/313 (77%), Gaps = 11/313 (3%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L E D E+ E++ +EK+RQFK LELIASENFTSRAVMEA+GS TNKY+EG PG RYYGG
Sbjct: 10 LKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGG 69
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E +DELETLCQKRAL AF LDE+KWGVNVQP SGSPANF VYTA+L+PHDRIMGLDLP
Sbjct: 70 TEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPS 129
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG+ T K+++S +SI+FESMPY++ + GL+DY LE+ A+LF+PKLII+GASAY
Sbjct: 130 GGHLTHGYQTDKKKISASSIFFESMPYQIG-ADGLIDYQRLEENALLFKPKLIISGASAY 188
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR++DY RMR IAD VGA LM DMAH SGLVAA ++ PF YCDVVT+TTHK+LRGPR G
Sbjct: 189 PREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSG 248
Query: 323 MIFFKK--------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374
+IFF++ + ++ES IN AVFP LQGGPH + I G+AV LK A S EFK
Sbjct: 249 IIFFRRGKRVDGNGKEIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKE 308
Query: 375 Y--QNKSACKPIG 385
Y Q K IG
Sbjct: 309 YALQVKKNAAAIG 321
|
Interconversion of serine and glycine. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P34898|GLYC_NEUCR Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=for PE=3 SV=2 | Back alignment and function description |
|---|
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/311 (64%), Positives = 244/311 (78%), Gaps = 9/311 (2%)
Query: 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG 136
+ +++SL E+DP+V EI+ KE +RQ +S+ LIASEN TSRAV +A+GS ++NKYSEGLPG
Sbjct: 12 AMLEHSLVESDPQVAEIMKKEVQRQRESIILIASENVTSRAVFDALGSPMSNKYSEGLPG 71
Query: 137 KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIM 196
RYYGGN++IDE+E LCQ RAL AF+LD +WGVNVQ LSGSPAN +VY AI+ H R+M
Sbjct: 72 ARYYGGNQHIDEIEVLCQNRALEAFHLDPKQWGVNVQCLSGSPANLQVYQAIMPVHGRLM 131
Query: 197 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256
GLDLPHGGHLSHG+ TP+R++S S YFE+MPYR++ TGL+DYD LEK A LFRPK+++
Sbjct: 132 GLDLPHGGHLSHGYQTPQRKISAVSTYFETMPYRVNIDTGLIDYDTLEKNAQLFRPKVLV 191
Query: 257 AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316
AG SAY R DY RMR+IAD+VGA L++DMAHISGL+A+ V+ PF Y DVVTTTTHKSL
Sbjct: 192 AGTSAYCRLIDYERMRKIADSVGAYLVVDMAHISGLIASEVIPSPFLYADVVTTTTHKSL 251
Query: 317 RGPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 367
RGPRG MIFF++ D G E LE IN +VFPG QGGPHNHTI LAV LK A
Sbjct: 252 RGPRGAMIFFRRGVRSVDAKTGKETLYDLEDKINFSVFPGHQGGPHNHTITALAVALKQA 311
Query: 368 QSPEFKVYQNK 378
SPEFK YQ K
Sbjct: 312 ASPEFKEYQQK 322
|
Interconversion of serine and glycine. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|O13426|GLYC_CANAL Serine hydroxymethyltransferase, cytosolic OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SHM2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/305 (64%), Positives = 238/305 (78%), Gaps = 9/305 (2%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DPEV +II E +RQ S+ LIASENFT+ AV +A+G+ + NKYSEG PG RYYGG
Sbjct: 18 LKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYGG 77
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
NE+ID +E LCQ+RAL AF L +KWGVNVQ LSGSPAN +VY AI+KPH+R+MGLDLPH
Sbjct: 78 NEHIDRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPH 137
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHLSHG+ T R++S S YFE+MPYR+D TGL+DYDMLEKTA+L+RPK+++AG SAY
Sbjct: 138 GGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAY 197
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R DY RMR+IAD VGA L++DMAHISGL+AA V+ PF+Y D+VTTTTHKSLRGPRG
Sbjct: 198 CRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGA 257
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIFF++ +P G E LE+ IN +VFPG QGGPHNHTI LA LK A +PEFK
Sbjct: 258 MIFFRRGVRSVNPKTGQEILYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFK 317
Query: 374 VYQNK 378
YQ +
Sbjct: 318 EYQEQ 322
|
Interconversion of serine and glycine. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|Q54EW1|GLYC2_DICDI Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/307 (62%), Positives = 240/307 (78%), Gaps = 8/307 (2%)
Query: 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR 138
+ S+ E+DPE+ +++ KEK+RQF LELIASENFTSRAVME++GSC TNKY+EGLPG R
Sbjct: 30 TNRSVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGAR 89
Query: 139 YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGL 198
YYGGNE +D+LE LC KRAL FNL+ +WGVNVQP SGS ANF +T +LKPHDRIMGL
Sbjct: 90 YYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGL 149
Query: 199 DLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258
DLP GGHL+HG+ T K+++S TSI+FESMPY+++E TG VDY+ +E A LFRPKL+IAG
Sbjct: 150 DLPSGGHLTHGYQTDKKKISATSIFFESMPYQVNE-TGYVDYNKMEANAALFRPKLLIAG 208
Query: 259 ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318
ASAYPR++DY RMR+IAD GA L+ DMAHISG+VA PF +CDVVTTTTHK+LRG
Sbjct: 209 ASAYPREWDYERMRKIADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRG 268
Query: 319 PRGGMIFFKKDP-------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE 371
PR G+IFF+K ++ +LE+ IN AVFP QGGPH +TI G+AV LK A SP+
Sbjct: 269 PRAGLIFFRKTKRRDAKGNIIDDDLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPD 328
Query: 372 FKVYQNK 378
F+ Y +
Sbjct: 329 FQEYTKQ 335
|
Interconversion of serine and glycine. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|O13972|GLYD_SCHPO Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24C9.12c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/303 (65%), Positives = 236/303 (77%), Gaps = 10/303 (3%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L E DP V EI+ E +RQ S+ LIASENFTSRAVM+A+GS ++NKYSEG PG RYYGG
Sbjct: 12 LKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGG 71
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
N++ID++ETLCQ+RALAAFNLD KWGVNVQ LSGSPAN +VY AI+ PH R+MGLDLP
Sbjct: 72 NKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLPS 131
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHLSHG+ T +++S S YFESMPYR+D +TGL+DYDMLE A LFRPK+++AG SAY
Sbjct: 132 GGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAY 191
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R DY RMRQIAD+V A L++DMAHISGLV+A V+ PF+Y DVVTTTTHKSLRGPRG
Sbjct: 192 CRLIDYARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRGA 251
Query: 323 MIFFKK---------DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIFF++ +P+ +LE IN +VFPG QGGPHNHTI LAV LK Q P +K
Sbjct: 252 MIFFRRGLRKHDKKGNPIY-YDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYK 310
Query: 374 VYQ 376
YQ
Sbjct: 311 EYQ 313
|
Interconversion of serine and glycine. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 385 | ||||||
| 224092216 | 529 | serine hydroxymethyltransferase 8 [Popul | 0.989 | 0.720 | 0.897 | 0.0 | |
| 134142079 | 529 | plastid serine hydroxymethyltransferase | 0.989 | 0.720 | 0.892 | 0.0 | |
| 225429452 | 528 | PREDICTED: serine hydroxymethyltransfera | 0.994 | 0.725 | 0.849 | 0.0 | |
| 255557552 | 527 | serine hydroxymethyltransferase, putativ | 0.992 | 0.724 | 0.849 | 0.0 | |
| 449460014 | 528 | PREDICTED: serine hydroxymethyltransfera | 0.979 | 0.714 | 0.841 | 0.0 | |
| 351724373 | 536 | serine hydroxymethyltransferase 4 [Glyci | 0.971 | 0.697 | 0.789 | 1e-177 | |
| 297798710 | 530 | hypothetical protein ARALYDRAFT_491471 [ | 1.0 | 0.726 | 0.775 | 1e-176 | |
| 14030719 | 529 | AT4g32520/F8B4_220 [Arabidopsis thaliana | 1.0 | 0.727 | 0.780 | 1e-176 | |
| 18418028 | 529 | serine hydroxymethyltransferase 3 [Arabi | 1.0 | 0.727 | 0.780 | 1e-176 | |
| 356555484 | 536 | PREDICTED: LOW QUALITY PROTEIN: serine h | 0.987 | 0.708 | 0.773 | 1e-175 |
| >gi|224092216|ref|XP_002309513.1| serine hydroxymethyltransferase 8 [Populus trichocarpa] gi|222855489|gb|EEE93036.1| serine hydroxymethyltransferase 8 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/381 (89%), Positives = 357/381 (93%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQA SGAAVMGSLQQP+ KGP P + SV++GFP Q++LN VKPCR SS+EGSLVTGRP
Sbjct: 1 MQATSGAAVMGSLQQPVLSKGPAFPMKRSVIIGFPYQVKLNSVKPCRASSLEGSLVTGRP 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
PSSVSVPIPE G D SSF DY LGEADPEV EII KEK+RQFKSLELIASENFTSRAVME
Sbjct: 61 PSSVSVPIPETGADISSFKDYGLGEADPEVLEIINKEKDRQFKSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA+FNLD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALASFNLDGKKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NFEVYTA+LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY
Sbjct: 181 NFEVYTALLKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTAILFRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVVAD
Sbjct: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 360
PF+YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV++ESAINNAVFPGLQGGPHNHTIGGL
Sbjct: 301 PFEYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVDMESAINNAVFPGLQGGPHNHTIGGL 360
Query: 361 AVCLKHAQSPEFKVYQNKSAC 381
AVCLKHAQSPEFK YQ + C
Sbjct: 361 AVCLKHAQSPEFKAYQKQVIC 381
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|134142079|gb|ABO61383.1| plastid serine hydroxymethyltransferase [Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/381 (89%), Positives = 355/381 (93%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQA SGAAVMGSLQQP+ KGP P + SV++GFP Q++LN VKPCR SS+EGSLVTGRP
Sbjct: 1 MQATSGAAVMGSLQQPVLSKGPAFPMKRSVIIGFPYQVKLNSVKPCRASSLEGSLVTGRP 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
PSSVSVPIPE G D SSF DY L EADPEV EII KEK+RQFKSLELIASENFTSRAVME
Sbjct: 61 PSSVSVPIPETGADISSFKDYGLSEADPEVLEIIKKEKDRQFKSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA+FNLD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALASFNLDGKKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NFEVYTA+LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY
Sbjct: 181 NFEVYTALLKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTAILFRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLV ASVVAD
Sbjct: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVPASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 360
PF+YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV++ESAINNAVFPGLQGGPHNHTIGGL
Sbjct: 301 PFEYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVDMESAINNAVFPGLQGGPHNHTIGGL 360
Query: 361 AVCLKHAQSPEFKVYQNKSAC 381
AVCLKHAQSPEFK YQ + C
Sbjct: 361 AVCLKHAQSPEFKAYQKQVIC 381
|
Source: Populus tremuloides Species: Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429452|ref|XP_002277146.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial [Vitis vinifera] gi|296081614|emb|CBI20619.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/386 (84%), Positives = 350/386 (90%), Gaps = 3/386 (0%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQACSG A MGSLQQPIW+KG GS + GFP+QI+LN VKPCR S I+GSLVTG+P
Sbjct: 1 MQACSGTAAMGSLQQPIWIKGSSFAPNGSTVNGFPHQIKLNSVKPCR-SYIKGSLVTGKP 59
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
PSSVSV +P G G +F+D+ L EADPEVC II KEK+RQ KSLELIASENFTSRAVME
Sbjct: 60 PSSVSVTVPGNGDSGVNFIDHGLNEADPEVCAIIYKEKQRQMKSLELIASENFTSRAVME 119
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNE+IDELETLCQKRALAAF+LD KWGVNVQPLSGSPA
Sbjct: 120 AVGSCLTNKYSEGLPGKRYYGGNEFIDELETLCQKRALAAFHLDGKKWGVNVQPLSGSPA 179
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NFEVYTA+L PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY
Sbjct: 180 NFEVYTALLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 239
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAYPRDFDYPRMR+IAD VGA LMMDMAHISGLVAASVVAD
Sbjct: 240 DMLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADGVGAFLMMDMAHISGLVAASVVAD 299
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 360
PF+YCD+VTTTTHKSLRGPRGGMIFFKKD VLGV+LESAINNAVFPGLQGGPHNHTIGGL
Sbjct: 300 PFEYCDIVTTTTHKSLRGPRGGMIFFKKDSVLGVDLESAINNAVFPGLQGGPHNHTIGGL 359
Query: 361 AVCLKHAQSPEFKVYQNK--SACKPI 384
+VCLKHAQSPEFK YQN+ S C+ +
Sbjct: 360 SVCLKHAQSPEFKAYQNQVVSNCRAL 385
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557552|ref|XP_002519806.1| serine hydroxymethyltransferase, putative [Ricinus communis] gi|223541045|gb|EEF42602.1| serine hydroxymethyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/386 (84%), Positives = 349/386 (90%), Gaps = 4/386 (1%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQ C+GA VMGSLQQP+W+KG LP + S VGFP+QI+LN +PCR +I+GSLV GRP
Sbjct: 1 MQGCTGAQVMGSLQQPVWIKGSSLPLKQSNFVGFPHQIKLNSFRPCRYLNIQGSLVAGRP 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
PSSVSVP EI GD SSF DY L EADPEV EII KEK RQFKSLELIASENFTSRAVME
Sbjct: 61 PSSVSVP--EIEGDRSSFKDYGLSEADPEVREIIEKEKNRQFKSLELIASENFTSRAVME 118
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNE+IDELETLCQ+RALAAF LD KWGVNVQPLSGSPA
Sbjct: 119 AVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQERALAAFGLDRKKWGVNVQPLSGSPA 178
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NFEVYTA+L PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY
Sbjct: 179 NFEVYTALLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 238
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVV D
Sbjct: 239 DMLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVGD 298
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 360
PF+YCD+VTTTTHKSLRGPRGGMIFF+KD +LGV+LESAINNAVFPGLQGGPHNHTIGGL
Sbjct: 299 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDTILGVDLESAINNAVFPGLQGGPHNHTIGGL 358
Query: 361 AVCLKHAQSPEFKVYQNK--SACKPI 384
AVCLKHAQSPEFK YQ + S C+ +
Sbjct: 359 AVCLKHAQSPEFKAYQKQVISNCRAL 384
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460014|ref|XP_004147741.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Cucumis sativus] gi|449519543|ref|XP_004166794.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/378 (84%), Positives = 345/378 (91%), Gaps = 1/378 (0%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQA SG AVMGSLQ + KG PS+ S + FP Q ++N++KPC+ +E S+V G+P
Sbjct: 1 MQATSGVAVMGSLQVAVCGKGSCFPSKSSSICVFPQQKKMNILKPCKSFKVEASMVAGKP 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
SSVSV +PEIGG S+FVD++L E DPEV II KEK+RQFKSLELIASENFTSRAVME
Sbjct: 61 SSSVSVTVPEIGGV-SNFVDHALSETDPEVRSIIDKEKQRQFKSLELIASENFTSRAVME 119
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNE+IDELETLCQ+RALAAF+LD NKWGVNVQPLSGSPA
Sbjct: 120 AVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFHLDNNKWGVNVQPLSGSPA 179
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NFEVYTA+L PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE+TG+VDY
Sbjct: 180 NFEVYTAVLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDY 239
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAYPRDFDYPRMR+IADAVGA LMMDMAHISGLVAASVVAD
Sbjct: 240 DMLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVAD 299
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 360
PF+YCD+VTTTTHKSLRGPRGGMIFF+KDPVLGV+LESAINNAVFPGLQGGPHNHTIGGL
Sbjct: 300 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGL 359
Query: 361 AVCLKHAQSPEFKVYQNK 378
AVCLKHAQSPEFKVYQNK
Sbjct: 360 AVCLKHAQSPEFKVYQNK 377
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351724373|ref|NP_001238335.1| serine hydroxymethyltransferase 4 [Glycine max] gi|222142535|gb|ACM45954.1| serine hydroxymethyltransferase 4 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 307/389 (78%), Positives = 335/389 (86%), Gaps = 15/389 (3%)
Query: 1 MQACSGAAVMGSLQQ-PIWVKGPRLPSEG-SVMVGFPNQIRLNMVKPCRCSSIEGSLVTG 58
MQAC+ M SLQQ PIW KG P++G GF Q+R +KP + S +E SLVTG
Sbjct: 1 MQACT---TMSSLQQQPIWTKGLNFPAKGYGSNNGFLPQVRFCNIKPSKASHVEASLVTG 57
Query: 59 RPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAV 118
+P SSV +PEIGGDGSSF+DY L EADP+V II KEK+RQFKSLELIASENFTSRAV
Sbjct: 58 KP-SSVPFSVPEIGGDGSSFLDYGLSEADPDVRAIIDKEKDRQFKSLELIASENFTSRAV 116
Query: 119 MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178
MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELE LCQ+RALAAF++DENKWGVNVQ LSGS
Sbjct: 117 MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELEILCQQRALAAFHVDENKWGVNVQTLSGS 176
Query: 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238
PANF VYTA+LKPHDRIMGLDLPHGGHLSHGFMTPK+RVS TSIYFESMPYRLDESTGL+
Sbjct: 177 PANFAVYTAVLKPHDRIMGLDLPHGGHLSHGFMTPKKRVSATSIYFESMPYRLDESTGLI 236
Query: 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR---------QIADAVGALLMMDMAHI 289
DYDMLEKTA LFRPKLI+AGASAYPRD DYPRMR +IAD VGA LMMDMAHI
Sbjct: 237 DYDMLEKTATLFRPKLIVAGASAYPRDIDYPRMRKLITSYMHGKIADEVGAFLMMDMAHI 296
Query: 290 SGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ 349
SGLVAASV+++PF+YCD+VTTTTHKSLRGPRGGMIFFKKD V GV+LE AINNAVFPGLQ
Sbjct: 297 SGLVAASVLSNPFEYCDIVTTTTHKSLRGPRGGMIFFKKDTVHGVDLEPAINNAVFPGLQ 356
Query: 350 GGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378
GGPHNHTIGGLAVCLK+AQSPEFK YQN+
Sbjct: 357 GGPHNHTIGGLAVCLKYAQSPEFKNYQNQ 385
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798710|ref|XP_002867239.1| hypothetical protein ARALYDRAFT_491471 [Arabidopsis lyrata subsp. lyrata] gi|297313075|gb|EFH43498.1| hypothetical protein ARALYDRAFT_491471 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust.
Identities = 300/387 (77%), Positives = 326/387 (84%), Gaps = 2/387 (0%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQAC G M SLQQP V+G P + F Q++ N KP R S +E +LV R
Sbjct: 1 MQACCGGTSMASLQQPGRVQGSVFPPLMPPVTKFSQQLKFNFSKPFRSSFLERNLVFERR 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
SSVS+P E+ +F DY LGE DPEV IITKEK+RQF+SLELIASENFTSRAVME
Sbjct: 61 ASSVSLPNVEMSSKDIAFADYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NF VYTAIL PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDY
Sbjct: 181 NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAY RDFDYPR+R+IAD++GA LMMDMAHISGLVAASVVAD
Sbjct: 241 DMLEKTATLFRPKLIIAGASAYSRDFDYPRLRKIADSIGAFLMMDMAHISGLVAASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 360
PF+YCD+VTTTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGL
Sbjct: 301 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGL 360
Query: 361 AVCLKHAQSPEFKVYQNK--SACKPIG 385
AVCLKHAQS EFK YQ + S C+ +
Sbjct: 361 AVCLKHAQSLEFKAYQKRVVSNCRALA 387
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14030719|gb|AAK53034.1|AF375450_1 AT4g32520/F8B4_220 [Arabidopsis thaliana] gi|23308475|gb|AAN18207.1| At4g32520/F8B4_220 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/387 (78%), Positives = 327/387 (84%), Gaps = 2/387 (0%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQAC G M SLQQP V+G P + F Q++ N+ KP R S ++ +LV+
Sbjct: 1 MQACCGGNSMASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMR 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
SSVS+P EI F DY LGE DPEV IITKEK+RQF+SLELIASENFTSRAVME
Sbjct: 61 ASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NF VYTAIL PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDY
Sbjct: 181 NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAY RDFDYPRMR+IAD+VGA LMMDMAHISGLVAASVVAD
Sbjct: 241 DMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 360
PF+YCD+VTTTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGL
Sbjct: 301 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGL 360
Query: 361 AVCLKHAQSPEFKVYQNK--SACKPIG 385
AVCLKHAQSPEFK YQ + S C+ +
Sbjct: 361 AVCLKHAQSPEFKAYQKRVVSNCRALA 387
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18418028|ref|NP_567895.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|186515561|ref|NP_001119098.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|332660671|gb|AEE86071.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] gi|332660672|gb|AEE86072.1| serine hydroxymethyltransferase 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/387 (78%), Positives = 327/387 (84%), Gaps = 2/387 (0%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRP 60
MQAC G M SLQQP V+G P + F Q++ N+ KP R S ++ +LV+
Sbjct: 1 MQACCGGNSMASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMR 60
Query: 61 PSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
SSVS+P EI F DY LGE DPEV IITKEK+RQF+SLELIASENFTSRAVME
Sbjct: 61 ASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NF VYTAIL PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDY
Sbjct: 181 NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAY RDFDYPRMR+IAD+VGA LMMDMAHISGLVAASVVAD
Sbjct: 241 DMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 360
PF+YCD+VTTTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGL
Sbjct: 301 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGL 360
Query: 361 AVCLKHAQSPEFKVYQNK--SACKPIG 385
AVCLKHAQSPEFK YQ + S C+ +
Sbjct: 361 AVCLKHAQSPEFKAYQKRVVSNCRALA 387
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555484|ref|XP_003546061.1| PREDICTED: LOW QUALITY PROTEIN: serine hydroxymethyltransferase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 307/397 (77%), Positives = 337/397 (84%), Gaps = 17/397 (4%)
Query: 1 MQACSGAAVMGSLQQ-PIWVKGPRLPSEG-SVMVGFPNQIRLNMVKPCRCSSIEGSLVTG 58
MQAC+ +M SLQQ PIW KG P++G GF Q+R +KP + S +E SLV G
Sbjct: 1 MQACT---MMSSLQQQPIWTKGLNFPAKGYGSNNGFVTQLRFCNIKPSKASHVEASLVAG 57
Query: 59 RPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAV 118
+P SSVS +PEIGGDGSSF+DY L EADPEV II KEK+RQFKSLELIASENFTSRAV
Sbjct: 58 KP-SSVSFSVPEIGGDGSSFLDYGLSEADPEVRAIIDKEKDRQFKSLELIASENFTSRAV 116
Query: 119 MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178
MEAVGSCLTNKYSEGLPG+RYYGGNEYIDELETLCQ+RALAAF++D NKWGVNVQ LSGS
Sbjct: 117 MEAVGSCLTNKYSEGLPGRRYYGGNEYIDELETLCQQRALAAFHVDGNKWGVNVQTLSGS 176
Query: 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238
PANF V+TA+LKPHDRIMGLDLPHGGHLSHGFMTPK+RVS TSIYFE MPY LDESTGL+
Sbjct: 177 PANFAVFTAVLKPHDRIMGLDLPHGGHLSHGFMTPKKRVSATSIYFEPMPYXLDESTGLI 236
Query: 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR---------QIADAVGALLMMDMAHI 289
DYDMLEKTA LFRPKLIIAGASAYP D DYPRMR +IAD VGA LMMDMAHI
Sbjct: 237 DYDMLEKTATLFRPKLIIAGASAYPXDIDYPRMRKLITSYTHGKIADEVGAFLMMDMAHI 296
Query: 290 SGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ 349
SGLVAASV+A+PF+YCD+VTTTTHKSLRGPRGGMIFFKKD V GV+LE AINNAVFPGLQ
Sbjct: 297 SGLVAASVLANPFEYCDIVTTTTHKSLRGPRGGMIFFKKDTVHGVDLEPAINNAVFPGLQ 356
Query: 350 GGPHNHTIGGLAVCLKHAQSPEFKVYQNK--SACKPI 384
GGPHNHTIGGLAVCLK+AQSPEFK YQN+ + CK +
Sbjct: 357 GGPHNHTIGGLAVCLKYAQSPEFKNYQNQVVANCKAL 393
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 385 | ||||||
| TAIR|locus:2127806 | 529 | SHM3 "serine hydroxymethyltran | 0.997 | 0.725 | 0.769 | 1.1e-156 | |
| TAIR|locus:2148463 | 533 | SHM2 "serine hydroxymethyltran | 0.771 | 0.557 | 0.681 | 4.8e-110 | |
| TAIR|locus:2005518 | 517 | SHM1 "serine transhydroxymethy | 0.768 | 0.572 | 0.680 | 7e-109 | |
| UNIPROTKB|E1BS67 | 486 | SHMT1 "Uncharacterized protein | 0.818 | 0.648 | 0.642 | 4.4e-107 | |
| DICTYBASE|DDB_G0277947 | 457 | shmt1 "serine hydroxymethyltra | 0.805 | 0.678 | 0.647 | 3.1e-106 | |
| RGD|1312011 | 681 | Shmt1 "serine hydroxymethyltra | 0.763 | 0.431 | 0.676 | 5.1e-106 | |
| TAIR|locus:2129251 | 471 | SHM4 "serine hydroxymethyltran | 0.779 | 0.636 | 0.654 | 1.4e-105 | |
| UNIPROTKB|A8MYA6 | 446 | SHMT1 "Serine hydroxymethyltra | 0.768 | 0.663 | 0.668 | 1.7e-105 | |
| UNIPROTKB|P34896 | 483 | SHMT1 "Serine hydroxymethyltra | 0.768 | 0.612 | 0.668 | 1.7e-105 | |
| UNIPROTKB|G4NDG3 | 482 | MGG_00923 "Serine hydroxymethy | 0.779 | 0.622 | 0.644 | 1.7e-105 |
| TAIR|locus:2127806 SHM3 "serine hydroxymethyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1527 (542.6 bits), Expect = 1.1e-156, P = 1.1e-156
Identities = 297/386 (76%), Positives = 321/386 (83%)
Query: 1 MQACSGAAVMGSLQQPIWVKGPRLPSEGSVMVGFPNQIRLNMVKPCRCSSIEGSLVTGRX 60
MQAC G M SLQQP V+G P + F Q++ N+ KP R S ++ +LV+
Sbjct: 1 MQACCGGNSMASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMR 60
Query: 61 XXXXXXXIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVME 120
EI F DY LGE DPEV IITKEK+RQF+SLELIASENFTSRAVME
Sbjct: 61 ASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME 120
Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180
AVGSCLTNKYSEGLPGKRYYGGNEYID+LETLCQ RALAAF LD KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA 180
Query: 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240
NF VYTAIL PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDESTG+VDY
Sbjct: 181 NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 240
Query: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300
DMLEKTA LFRPKLIIAGASAY RDFDYPRMR+IAD+VGA LMMDMAHISGLVAASVVAD
Sbjct: 241 DMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVAD 300
Query: 301 PFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGL 360
PF+YCD+VTTTTHKSLRGPRGGMIFF+KDP+ GV+LESA+NNAVFPGLQGGPHNHTIGGL
Sbjct: 301 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGL 360
Query: 361 AVCLKHAQSPEFKVYQNK--SACKPI 384
AVCLKHAQSPEFK YQ + S C+ +
Sbjct: 361 AVCLKHAQSPEFKAYQKRVVSNCRAL 386
|
|
| TAIR|locus:2148463 SHM2 "serine hydroxymethyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 208/305 (68%), Positives = 245/305 (80%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL E DPEV +II EK RQ+K ELI SENFTS +VM+AVGS +TNKYSEG PG RYYG
Sbjct: 54 SLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYG 113
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
GNEYID ETLCQKRAL AF LD +KWGVNVQ LSGSPANF+VYTA+LKPH+RIM LDLP
Sbjct: 114 GNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLP 173
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHLSHG+ T +++S SI+FE+MPYRLDE+TG +DYD LEK+A+LFRPKLI+AGASA
Sbjct: 174 HGGHLSHGYQTDTKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASA 233
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R +DY R+R++ + A+++ DMAHISGLVAA V+ PF+Y DVVTTTTHKSLRGPRG
Sbjct: 234 YARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG 293
Query: 322 GMIFFKKD----PVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIFF+K G E+ E IN AVFPGLQGGPHNHTI GLAV LK A++PE+K
Sbjct: 294 AMIFFRKGLKEINKQGKEVMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPEYK 353
Query: 374 VYQNK 378
YQ++
Sbjct: 354 AYQDQ 358
|
|
| TAIR|locus:2005518 SHM1 "serine transhydroxymethyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
Identities = 207/304 (68%), Positives = 240/304 (78%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L E DPE+ +II EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 55 LEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 114
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
NEYID ETLCQKRAL AF LD KWGVNVQPLSGSPANF VYTA+LKPH+RIM LDLPH
Sbjct: 115 NEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPH 174
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHLSHG+ T +++S SI+FE+MPYRLDESTG +DYD +EK+A LFRPKLI+AGASAY
Sbjct: 175 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAY 234
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R +DY R+R++ + A+++ DMAHISGLVAA+V+ PF Y DVVTTTTHKSLRGPRG
Sbjct: 235 ARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGA 294
Query: 323 MIFFKKDPV----LGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374
MIFF+K G E+ E IN AVFPGLQGGPHNHTI GLAV LK A + E+K
Sbjct: 295 MIFFRKGVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKA 354
Query: 375 YQNK 378
YQ +
Sbjct: 355 YQEQ 358
|
|
| UNIPROTKB|E1BS67 SHMT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
Identities = 210/327 (64%), Positives = 246/327 (75%)
Query: 70 EIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK 129
E+ S + L DPEV II KEK+RQ LELIASENF S AV+EA+GSCL NK
Sbjct: 15 ELWASHSKMLLEPLDSNDPEVYNIIKKEKQRQRLGLELIASENFASCAVLEALGSCLNNK 74
Query: 130 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189
YSEG PG+RYYGG E++DELE LCQKRAL AF LD KWGVNVQP SGSPANF VYTA++
Sbjct: 75 YSEGYPGQRYYGGTEFVDELERLCQKRALQAFRLDPQKWGVNVQPYSGSPANFAVYTALV 134
Query: 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL 249
+PH RIMGLDLP GGHL+HGFMT K+++S TS++FESMPY+++ TG +DYD LE+ A L
Sbjct: 135 EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSVFFESMPYKVNPKTGYIDYDKLEENARL 194
Query: 250 FRPKLIIA-GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVV 308
F PKLIIA G S Y R+ DY RMRQIA+A A LM DMAHISGLVAA VV PF++CDVV
Sbjct: 195 FHPKLIIAAGVSCYSRNLDYARMRQIANANSAYLMADMAHISGLVAAGVVPSPFEHCDVV 254
Query: 309 TTTTHKSLRGPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGG 359
+TTTHK+LRG R GMIF++K DP G E LES IN AVFPGLQGGPHNH I G
Sbjct: 255 STTTHKTLRGCRAGMIFYRKGTRSTDPKTGKETLYNLESLINQAVFPGLQGGPHNHAIAG 314
Query: 360 LAVCLKHAQSPEFKVYQNK--SACKPI 384
+AV L+ A +PEFK YQ + + CK +
Sbjct: 315 IAVALQQAMTPEFKAYQQQVVANCKTL 341
|
|
| DICTYBASE|DDB_G0277947 shmt1 "serine hydroxymethyltransferase 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 208/321 (64%), Positives = 248/321 (77%)
Query: 75 GSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGL 134
GS + L E D E+ E++ +EK+RQFK LELIASENFTSRAVMEA+GS TNKY+EG
Sbjct: 2 GSVSGNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGY 61
Query: 135 PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDR 194
PG RYYGG E +DELETLCQKRAL AF LDE+KWGVNVQP SGSPANF VYTA+L+PHDR
Sbjct: 62 PGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDR 121
Query: 195 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL 254
IMGLDLP GGHL+HG+ T K+++S +SI+FESMPY++ + GL+DY LE+ A+LF+PKL
Sbjct: 122 IMGLDLPSGGHLTHGYQTDKKKISASSIFFESMPYQIG-ADGLIDYQRLEENALLFKPKL 180
Query: 255 IIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHK 314
II+GASAYPR++DY RMR IAD VGA LM DMAH SGLVAA ++ PF YCDVVT+TTHK
Sbjct: 181 IISGASAYPREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHK 240
Query: 315 SLRGPRGGMIFFKKDPVL---GVELE-----SAINNAVFPGLQGGPHNHTIGGLAVCLKH 366
+LRGPR G+IFF++ + G E+E S IN AVFP LQGGPH + I G+AV LK
Sbjct: 241 TLRGPRSGIIFFRRGKRVDGNGKEIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKE 300
Query: 367 AQSPEFKVY--QNKSACKPIG 385
A S EFK Y Q K IG
Sbjct: 301 ADSQEFKEYALQVKKNAAAIG 321
|
|
| RGD|1312011 Shmt1 "serine hydroxymethyltransferase 1 (soluble)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 205/303 (67%), Positives = 237/303 (78%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L E+D EV II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 223 LKESDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 282
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A++LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 283 TEFIDELETLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 342
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESMPY++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 343 GGHLTHGFMTDKKKISATSIFFESMPYKVYPDTGYINYDQLEENASLFHPKLIIAGTSCY 402
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA LM DMAHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 403 SRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 462
Query: 323 MIFFKK-----DPVLG----VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIF++K DP G ELES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct: 463 MIFYRKGVRSVDPKTGEETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFK 522
Query: 374 VYQ 376
+YQ
Sbjct: 523 IYQ 525
|
|
| TAIR|locus:2129251 SHM4 "serine hydroxymethyltransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 203/310 (65%), Positives = 241/310 (77%)
Query: 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP 135
SS+ + SL DPE+ ++I KEK RQ + +ELIASENFTS AV+EA+GS LTNKYSEG+P
Sbjct: 5 SSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGIP 64
Query: 136 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRI 195
G RYYGGNE+IDE+E LC+ RAL AF+ D WGVNVQP SGSPANF YTA+L+PHDRI
Sbjct: 65 GNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPHDRI 124
Query: 196 MGLDLPHGGHLSHGFMTPK-RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL 254
MGLDLP GGHL+HG+ T +++S TSIYFES+PY+++ +TG +DYD LE+ A+ FRPKL
Sbjct: 125 MGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPKL 184
Query: 255 IIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHK 314
+I G SAYPRD+DY R R IAD VGALL+ DMAHISGLVAA A+PF+YCDVVTTTTHK
Sbjct: 185 LICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTTTTHK 244
Query: 315 SLRGPRGGMIFFKKDPVL-------GV--ELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365
SLRGPR GMIF++K P G + E IN AVFP LQGGPHNH IG LAV LK
Sbjct: 245 SLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALAVALK 304
Query: 366 HAQSPEFKVY 375
A +P FKVY
Sbjct: 305 QANTPGFKVY 314
|
|
| UNIPROTKB|A8MYA6 SHMT1 "Serine hydroxymethyltransferase, cytosolic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 204/305 (66%), Positives = 239/305 (78%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 86 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESMPY+++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 205
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ +Y R+R+IAD GA LM DMAHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 206 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 265
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIF++K DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct: 266 MIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFK 325
Query: 374 VYQNK 378
VYQ++
Sbjct: 326 VYQHQ 330
|
|
| UNIPROTKB|P34896 SHMT1 "Serine hydroxymethyltransferase, cytosolic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 204/305 (66%), Positives = 239/305 (78%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 86 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESMPY+++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 205
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ +Y R+R+IAD GA LM DMAHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 206 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 265
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIF++K DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct: 266 MIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFK 325
Query: 374 VYQNK 378
VYQ++
Sbjct: 326 VYQHQ 330
|
|
| UNIPROTKB|G4NDG3 MGG_00923 "Serine hydroxymethyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 199/309 (64%), Positives = 245/309 (79%)
Query: 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR 138
++ SL ++DPEV EI+ E +RQ +S+ LIASEN TSRAV +A+GS ++NKYSEG PGKR
Sbjct: 16 LEKSLLDSDPEVAEIMKHEIQRQRESIILIASENVTSRAVFDALGSPMSNKYSEGYPGKR 75
Query: 139 YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGL 198
YYGGN++IDE+E LCQ+RALAAFN+ E+KWGVNVQ LSGSPAN +VY AI+ PH R+MGL
Sbjct: 76 YYGGNQHIDEIELLCQRRALAAFNVTEDKWGVNVQCLSGSPANLQVYQAIMPPHGRLMGL 135
Query: 199 DLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258
DLPHGGHLSHG+ TP+R++S S YFE+MPYR+D TG++DYD LEK +L+RPK+++AG
Sbjct: 136 DLPHGGHLSHGYQTPQRKISAVSTYFETMPYRVDLETGIIDYDQLEKNVVLYRPKILVAG 195
Query: 259 ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318
SAY R DY RMR+IAD VGA L++D+AHISGLVA+ V+ PF + DVVTTTTHKSLRG
Sbjct: 196 TSAYCRLIDYARMRKIADLVGAYLVVDIAHISGLVASGVIPSPFLHADVVTTTTHKSLRG 255
Query: 319 PRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 369
PRG MIFF++ DP G E LE IN +VFPG QGGPHNHTI LAV LK A +
Sbjct: 256 PRGAMIFFRRGVRSVDPKTGKETMYDLEEPINFSVFPGHQGGPHNHTITALAVALKQAST 315
Query: 370 PEFKVYQNK 378
PEFK YQ +
Sbjct: 316 PEFKAYQQQ 324
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q75BQ6 | GLYC_ASHGO | 2, ., 1, ., 2, ., 1 | 0.6136 | 0.7766 | 0.6375 | yes | no |
| A6LBG7 | GLYA_PARD8 | 2, ., 1, ., 2, ., 1 | 0.5066 | 0.7298 | 0.6596 | yes | no |
| P37291 | GLYC_YEAST | 2, ., 1, ., 2, ., 1 | 0.6295 | 0.7688 | 0.6311 | yes | no |
| B0K742 | GLYA_THEP3 | 2, ., 1, ., 2, ., 1 | 0.5408 | 0.7246 | 0.6755 | yes | no |
| Q3K5K9 | GLYA3_PSEPF | 2, ., 1, ., 2, ., 1 | 0.5205 | 0.7246 | 0.6690 | yes | no |
| Q39V87 | GLYA_GEOMG | 2, ., 1, ., 2, ., 1 | 0.5205 | 0.7194 | 0.6674 | yes | no |
| Q88R12 | GLYA1_PSEPK | 2, ., 1, ., 2, ., 1 | 0.5102 | 0.7246 | 0.6690 | yes | no |
| Q6AM21 | GLYA_DESPS | 2, ., 1, ., 2, ., 1 | 0.5340 | 0.7220 | 0.6541 | yes | no |
| B1I6M4 | GLYA_DESAP | 2, ., 1, ., 2, ., 1 | 0.5418 | 0.7376 | 0.6843 | yes | no |
| Q9HTE9 | GLYA1_PSEAE | 2, ., 1, ., 2, ., 1 | 0.5206 | 0.7194 | 0.6642 | yes | no |
| Q24MM6 | GLYA_DESHY | 2, ., 1, ., 2, ., 1 | 0.5136 | 0.7194 | 0.6642 | yes | no |
| Q8R887 | GLYA_THETN | 2, ., 1, ., 2, ., 1 | 0.5442 | 0.7246 | 0.6755 | yes | no |
| B0K631 | GLYA_THEPX | 2, ., 1, ., 2, ., 1 | 0.5408 | 0.7246 | 0.6755 | yes | no |
| O62585 | GLYC_ENCCU | 2, ., 1, ., 2, ., 1 | 0.5574 | 0.7584 | 0.6347 | yes | no |
| O13972 | GLYD_SCHPO | 2, ., 1, ., 2, ., 1 | 0.6534 | 0.7610 | 0.6274 | yes | no |
| Q5E9P9 | GLYC_BOVIN | 2, ., 1, ., 2, ., 1 | 0.6524 | 0.7688 | 0.6115 | yes | no |
| A8MGL7 | GLYA_ALKOO | 2, ., 1, ., 2, ., 1 | 0.5286 | 0.7324 | 0.6878 | yes | no |
| B0TI64 | GLYA_HELMI | 2, ., 1, ., 2, ., 1 | 0.5168 | 0.7298 | 0.6803 | yes | no |
| A2C090 | GLYA_PROM1 | 2, ., 1, ., 2, ., 1 | 0.5342 | 0.7220 | 0.6763 | yes | no |
| Q6FUP6 | GLYC_CANGA | 2, ., 1, ., 2, ., 1 | 0.6196 | 0.7688 | 0.6311 | yes | no |
| Q48CP3 | GLYA2_PSE14 | 2, ., 1, ., 2, ., 1 | 0.5136 | 0.7246 | 0.6690 | yes | no |
| O66776 | GLYA_AQUAE | 2, ., 1, ., 2, ., 1 | 0.5304 | 0.7298 | 0.6565 | yes | no |
| Q54Z26 | GLYC1_DICDI | 2, ., 1, ., 2, ., 1 | 0.6517 | 0.7844 | 0.6608 | yes | no |
| Q46HB6 | GLYA_PROMT | 2, ., 1, ., 2, ., 1 | 0.5374 | 0.7272 | 0.6812 | yes | no |
| Q4K4P6 | GLYA2_PSEF5 | 2, ., 1, ., 2, ., 1 | 0.5239 | 0.7246 | 0.6690 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.2 | 0.921 |
| 4th Layer | 2.1.2.1 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 385 | |||
| PLN03226 | 475 | PLN03226, PLN03226, serine hydroxymethyltransferas | 0.0 | |
| PTZ00094 | 452 | PTZ00094, PTZ00094, serine hydroxymethyltransferas | 0.0 | |
| pfam00464 | 380 | pfam00464, SHMT, Serine hydroxymethyltransferase | 0.0 | |
| cd00378 | 402 | cd00378, SHMT, Serine-glycine hydroxymethyltransfe | 1e-176 | |
| COG0112 | 413 | COG0112, GlyA, Glycine/serine hydroxymethyltransfe | 1e-163 | |
| PLN02271 | 586 | PLN02271, PLN02271, serine hydroxymethyltransferas | 1e-160 | |
| PRK00011 | 416 | PRK00011, glyA, serine hydroxymethyltransferase; R | 1e-157 | |
| PRK13034 | 416 | PRK13034, PRK13034, serine hydroxymethyltransferas | 1e-139 | |
| PRK13580 | 493 | PRK13580, PRK13580, serine hydroxymethyltransferas | 2e-84 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 2e-27 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 1e-04 |
| >gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 651 bits (1682), Expect = 0.0
Identities = 235/327 (71%), Positives = 260/327 (79%), Gaps = 10/327 (3%)
Query: 69 PEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTN 128
+ + + L E DPE+ +II KEK RQ+K LELIASENFTSRAVMEA+GSCLTN
Sbjct: 1 EKSMVSVPKWGNAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTN 60
Query: 129 KYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188
KYSEGLPG RYYGGNEYID++ETLCQKRAL AF LD KWGVNVQPLSGSPANF VYTA+
Sbjct: 61 KYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTAL 120
Query: 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI 248
L+PHDRIMGLDLPHGGHLSHG+ T +++S TSIYFESMPYRLDESTGL+DYD LEK A+
Sbjct: 121 LQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAM 180
Query: 249 LFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVV 308
LFRPKLIIAGASAYPRD+DY RMR+IAD VGALLM DMAHISGLVAA A PF+YCDVV
Sbjct: 181 LFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVV 240
Query: 309 TTTTHKSLRGPRGGMIFFKKDPVLG--------VELESAINNAVFPGLQGGPHNHTIGGL 360
TTTTHKSLRGPRGGMIFF+K P + E IN AVFPGLQGGPHNHTI L
Sbjct: 241 TTTTHKSLRGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAAL 300
Query: 361 AVCLKHAQSPEFKVYQN--KSACKPIG 385
AV LK A +PEFK YQ K+ +
Sbjct: 301 AVALKQAMTPEFKAYQKQVKANAAALA 327
|
Length = 475 |
| >gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 572 bits (1477), Expect = 0.0
Identities = 207/295 (70%), Positives = 241/295 (81%), Gaps = 3/295 (1%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL EADPE+ E+I KEKERQ + LELIASENFTSRAV+E +GSC TNKY+EGLPG RYYG
Sbjct: 14 SLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYG 73
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
GNE +D++E LCQKRAL AF LD +WGVNVQP SGSPANF VYTA+L+PHDRIMGLDLP
Sbjct: 74 GNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLP 133
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HGF T K++VS TSIYFES+PY+++E GL+DYD LE+ A FRPKLIIAGASA
Sbjct: 134 SGGHLTHGFYTAKKKVSATSIYFESLPYQVNE-KGLIDYDKLEELAKAFRPKLIIAGASA 192
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
YPRD DY R R+I D+VGA LM D+AH SGLVAA V+ PF Y DVVTTTTHKSLRGPR
Sbjct: 193 YPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS 252
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376
G+IF++K + ++E+ IN AVFPGLQGGPHNH I +AV LK QSPE+K Y
Sbjct: 253 GLIFYRKK--VKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYA 305
|
Length = 452 |
| >gnl|CDD|189558 pfam00464, SHMT, Serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 506 bits (1306), Expect = 0.0
Identities = 196/296 (66%), Positives = 225/296 (76%), Gaps = 12/296 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++DPE+ +II KEKERQ + +ELIASENFTSRAVMEA+GS LTNKY+EG PGKRYYGG
Sbjct: 1 LSDSDPEIFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYAEGYPGKRYYGG 60
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+DE+ETL Q RA F LD GVNVQPLSGS AN VYTA+L P DRIMGLDLPH
Sbjct: 61 CEYVDEVETLAQDRAKELFGLD----GVNVQPLSGSQANLAVYTALLNPGDRIMGLDLPH 116
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG+ + +FESMPY +D TGL+DYD LEK A LF+PKLI+AG SAY
Sbjct: 117 GGHLTHGYPVNF-----SGKFFESMPYGVDPDTGLIDYDQLEKNAKLFKPKLIVAGTSAY 171
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R DY R R+IAD VGA LM+DMAHI+GLVAA V+ PF Y VVTTTTHK+LRGPRGG
Sbjct: 172 SRLIDYARFREIADEVGAYLMVDMAHIAGLVAAGVIPSPFPYAHVVTTTTHKTLRGPRGG 231
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378
MIFF++ ELE IN+AVFPGLQGGP NH I AV LK A +PEFKVYQ +
Sbjct: 232 MIFFREIL---YELEKKINSAVFPGLQGGPLNHVIAAKAVALKQALTPEFKVYQQQ 284
|
Length = 380 |
| >gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Score = 495 bits (1276), Expect = e-176
Identities = 178/294 (60%), Positives = 211/294 (71%), Gaps = 12/294 (4%)
Query: 85 EADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNE 144
+ DPE+ EII KE ERQ ++LELIASENFTS AVMEA+GS LTNKY+EG PGKRYYGG E
Sbjct: 2 DVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCE 61
Query: 145 YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGG 204
Y+DE+E L +RA F + NVQP SGS AN VY A+L+P D IMGLDL HGG
Sbjct: 62 YVDEIEDLAIERAKKLFGAE----YANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGG 117
Query: 205 HLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 264
HL+HG T +VS + FES+PY +D TGL+DYD LEK A+ F+PKLI+AGASAYPR
Sbjct: 118 HLTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPR 174
Query: 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMI 324
D+ R R+IAD VGA L++DMAH++GLVA V +P DVVTTTTHK+LRGPRGG+I
Sbjct: 175 PIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLI 234
Query: 325 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378
+K EL IN+AVFPGLQGGPH H I AV LK A PEFK Y +
Sbjct: 235 LTRKG-----ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQ 283
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. Length = 402 |
| >gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-163
Identities = 167/300 (55%), Positives = 199/300 (66%), Gaps = 14/300 (4%)
Query: 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG 136
S SL + DPE+ E I +E ERQ + +ELIASENFTS AVMEA GS LTNKY+EG PG
Sbjct: 1 SRSYASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPG 60
Query: 137 KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIM 196
KRYYGG EY+DE+E L +RA F + NVQP SGS AN VY A+L+P D IM
Sbjct: 61 KRYYGGCEYVDEVEELAIERAKKLFGAE----YANVQPHSGSQANQAVYLALLQPGDTIM 116
Query: 197 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256
GLDL HGGHL+HG V+ + F + Y +D TGL+DYD +EK A +PKLII
Sbjct: 117 GLDLSHGGHLTHG-----SPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLII 171
Query: 257 AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316
AG SAY R D+ R R+IAD VGA LM+DMAH++GL+A V +P + DVVTTTTHK+L
Sbjct: 172 AGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTL 231
Query: 317 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376
RGPRGG+I + EL IN+AVFPGLQGGP H I AV K A PEFK Y
Sbjct: 232 RGPRGGIILTNDE-----ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYA 286
|
Length = 413 |
| >gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 461 bits (1188), Expect = e-160
Identities = 190/311 (61%), Positives = 234/311 (75%), Gaps = 15/311 (4%)
Query: 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 139
+ L EADP++ E++ KEK+RQFK +ELIASENF RAVMEA+GS LTNKYSEG+PG RY
Sbjct: 126 NQPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARY 185
Query: 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 199
Y GN+YID++E LC +RALAAF LD KWGVNVQP S + ANF VYT +L P DRIMGLD
Sbjct: 186 YTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLD 245
Query: 200 LPHGGHLSHGFMTPK-RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258
P GGH+SHG+ TP ++VSG SI+FES+PY+++ TG +DYD LE+ A+ FRPK++I G
Sbjct: 246 SPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICG 305
Query: 259 ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318
S+YPR++DY R RQIAD GA+LM DMAHISGLVAA +PF YCD+VT+TTHKSLRG
Sbjct: 306 GSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRG 365
Query: 319 PRGGMIFFKKDPVL---------GVE-----LESAINNAVFPGLQGGPHNHTIGGLAVCL 364
PRGG+IF++K P L G + E IN AVFP LQGGPHN+ I LA+ L
Sbjct: 366 PRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIAL 425
Query: 365 KHAQSPEFKVY 375
K +PE+K Y
Sbjct: 426 KQVATPEYKAY 436
|
Length = 586 |
| >gnl|CDD|234571 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 447 bits (1153), Expect = e-157
Identities = 164/295 (55%), Positives = 198/295 (67%), Gaps = 14/295 (4%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
+L E DPE+ + I +E +RQ + +ELIASENF S AVMEA GS LTNKY+EG PGKRYYG
Sbjct: 5 NLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYG 64
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G EY+D +E L RA F + NVQP SGS AN VY A+LKP D I+G+DL
Sbjct: 65 GCEYVDVVEQLAIDRAKELFGAEY----ANVQPHSGSQANAAVYFALLKPGDTILGMDLA 120
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG V+ + + + Y +DE TGL+DYD +EK A+ +PKLIIAGASA
Sbjct: 121 HGGHLTHG-----SPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA 175
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R D+ R R+IAD VGA LM+DMAHI+GLVAA V P + DVVTTTTHK+LRGPRG
Sbjct: 176 YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRG 235
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376
G+I + EL IN+AVFPG+QGGP H I AV K A PEFK Y
Sbjct: 236 GLILTNDE-----ELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYA 285
|
Length = 416 |
| >gnl|CDD|237280 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 402 bits (1035), Expect = e-139
Identities = 169/301 (56%), Positives = 200/301 (66%), Gaps = 14/301 (4%)
Query: 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP 135
F SL E D EV I KE ERQ LELIASENFTS AVMEA GS LTNKY+EG P
Sbjct: 2 MFFFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYP 61
Query: 136 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRI 195
GKRYYGG E++DE+E L +RA F D NVQP SGS AN VY A+LKP D I
Sbjct: 62 GKRYYGGCEFVDEVEALAIERAKQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTI 117
Query: 196 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255
+G+ L HGGHL+HG +VS + ++ ++ Y +D TGL+DYD +E+ A +PKLI
Sbjct: 118 LGMSLSHGGHLTHG-----AKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLI 172
Query: 256 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS 315
IAG SAYPR+ D+ R R+IAD VGALLM+DMAHI+GLVAA +PF + VVTTTTHK+
Sbjct: 173 IAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKT 232
Query: 316 LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 375
LRGPRGGMI + E+ IN+AVFPGLQGGP H I AV A PEFK Y
Sbjct: 233 LRGPRGGMILTNDE-----EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTY 287
Query: 376 Q 376
Sbjct: 288 A 288
|
Length = 416 |
| >gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 264 bits (678), Expect = 2e-84
Identities = 125/327 (38%), Positives = 177/327 (54%), Gaps = 50/327 (15%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
+ +P + E I +E Q SL+LIASEN++S AV A+G+ LT+KY+EG PG R+Y G
Sbjct: 30 ILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAG 89
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH---------- 192
+ +D +E + A F + VQP SG+ AN + AIL
Sbjct: 90 CQNVDTVEWEAAEHAKELFGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLG 145
Query: 193 ---------------------DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231
R++G+ L GGHL+HGF R + + F Y +
Sbjct: 146 AKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGF-----RPNISGKMFHQRSYGV 200
Query: 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISG 291
D TGL+DYD + A F+P +++AG SAYPR ++ ++R+IAD VGA+LM+DMAH +G
Sbjct: 201 DPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAG 260
Query: 292 LVAASVVA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL 348
LVA V DP + D+VTTTTHK+LRGPRGG++ KK E A++ P +
Sbjct: 261 LVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK------EYADAVDKGC-PLV 313
Query: 349 QGGPHNHTIGGLAVCLKHAQSPEFKVY 375
GGP H + AV L A++PEF+ Y
Sbjct: 314 LGGPLPHVMAAKAVALAEARTPEFQKY 340
|
Length = 493 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-27
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 15/182 (8%)
Query: 149 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSH 208
+++ P SG+ AN A+L P D ++ HG
Sbjct: 1 KLEELEEKLARLLQ--PGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRY-- 55
Query: 209 GFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 267
V+ + +P +D++ G +D +LE+ LI+ +
Sbjct: 56 -------WVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVL 108
Query: 268 YP--RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 325
P +R+IA G LL++D A G A V P DVVT + HK+L G GG++
Sbjct: 109 VPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVI 168
Query: 326 FK 327
K
Sbjct: 169 VK 170
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 266 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMI 324
+ ++A GAL+++D A +G + V CD + + HK L GP G G++
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQEL---GCDFLAFSGHKWLLGPTGIGVL 235
Query: 325 FFKKD 329
+ +K+
Sbjct: 236 YVRKE 240
|
Length = 405 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 385 | |||
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 100.0 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 100.0 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 100.0 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 100.0 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 100.0 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 100.0 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.92 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.9 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.9 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.88 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.88 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.88 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.87 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.86 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.86 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.86 | |
| PLN02651 | 364 | cysteine desulfurase | 99.85 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.85 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.85 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.85 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.84 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.84 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.84 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.83 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.83 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.83 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.83 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.83 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.83 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.82 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.82 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.82 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.82 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.82 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.82 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.81 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.81 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.81 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.81 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.81 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.8 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.8 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.8 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.8 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.8 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.8 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.79 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.79 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.79 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.79 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.79 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.79 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.79 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.79 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.79 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.78 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.78 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.78 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.78 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.78 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.78 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.78 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.78 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.78 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.78 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.78 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.77 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.77 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.77 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.77 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.77 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.77 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.76 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.76 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.76 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.76 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.76 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.76 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.76 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.76 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.76 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.76 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.76 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.76 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.76 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.75 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.75 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.75 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.75 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.75 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.75 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.75 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.75 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.75 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.75 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.75 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.75 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.75 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.75 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.75 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.75 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.75 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.75 | |
| PRK07324 | 373 | transaminase; Validated | 99.74 | |
| PLN02656 | 409 | tyrosine transaminase | 99.74 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.74 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.74 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.74 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.74 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.74 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.74 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.74 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.74 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.73 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.73 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.73 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.73 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.73 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.73 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.73 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.73 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.73 | |
| PLN02187 | 462 | rooty/superroot1 | 99.73 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.73 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.72 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.72 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.72 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.72 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.72 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.72 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.72 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.72 | |
| PLN02368 | 407 | alanine transaminase | 99.72 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.72 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.72 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.72 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.72 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.71 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.71 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.71 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.71 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.71 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.71 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.71 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.71 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.71 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.7 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.7 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.7 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.7 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.7 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.7 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.7 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.7 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.7 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.69 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.69 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.69 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.69 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.69 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.69 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.69 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.69 | |
| PLN02721 | 353 | threonine aldolase | 99.68 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.68 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.68 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.68 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.68 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.68 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.67 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.67 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.67 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.67 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.67 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.67 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.67 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.67 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.67 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.67 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.66 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.66 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.66 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.66 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.66 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.66 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.66 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.65 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.65 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.64 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.64 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.64 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.64 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.64 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.63 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.63 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.63 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.63 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.63 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.63 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.63 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.62 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.62 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.62 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.62 | |
| PLN02231 | 534 | alanine transaminase | 99.62 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.62 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.62 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.62 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.61 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.6 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.6 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.6 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.6 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.6 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.6 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.59 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.59 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.59 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.59 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.59 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.58 | |
| PLN02263 | 470 | serine decarboxylase | 99.58 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.58 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.58 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.58 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.58 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.57 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.57 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.57 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.57 | |
| PLN02397 | 423 | aspartate transaminase | 99.56 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.56 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.54 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.53 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.53 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.52 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.52 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.52 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.52 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.52 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.52 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.52 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.51 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.51 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.5 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.5 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.49 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.49 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.49 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.48 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.48 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.48 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.48 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.47 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.45 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.44 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.43 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.43 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.43 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.41 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.41 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.4 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.4 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.38 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.38 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.36 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.35 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.35 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.34 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.33 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.33 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.31 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.31 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.3 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.29 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.29 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.27 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.26 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.25 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.25 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.24 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 99.23 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.22 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.2 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.2 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.2 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.19 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.09 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.07 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.06 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.06 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.05 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.03 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.03 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.01 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.01 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 98.99 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.98 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 98.98 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 98.97 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.94 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.94 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.93 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.93 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 98.93 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 98.92 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 98.91 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 98.89 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 98.89 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.86 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 98.86 | |
| PRK07046 | 453 | aminotransferase; Validated | 98.86 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 98.86 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 98.83 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.82 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 98.82 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.81 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 98.81 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 98.8 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 98.8 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.79 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 98.78 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 98.76 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 98.75 | |
| PRK06105 | 460 | aminotransferase; Provisional | 98.73 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.72 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.7 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 98.68 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 98.68 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 98.68 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 98.67 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 98.66 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 98.62 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 98.6 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.59 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 98.59 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 98.57 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.56 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 98.56 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.52 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 98.51 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 98.51 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.51 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.5 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.5 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 98.49 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 98.48 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 98.46 | |
| PRK07678 | 451 | aminotransferase; Validated | 98.45 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 98.43 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 98.43 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.42 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 98.41 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.41 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.38 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.37 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.37 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 98.36 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.35 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 98.34 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.33 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 98.31 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.29 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.25 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 98.21 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.2 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.2 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 98.14 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.01 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 97.99 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 97.98 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 97.98 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 97.97 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 97.84 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 97.81 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.81 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 97.69 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 97.47 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.46 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 97.39 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 97.37 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 97.29 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 97.19 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 96.09 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 96.06 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 93.75 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 92.47 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 92.44 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 91.62 |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-84 Score=617.62 Aligned_cols=308 Identities=71% Similarity=1.143 Sum_probs=299.9
Q ss_pred cchhhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 76 ~~~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
..++..+|.+.|||++++|++|+.||+.+|+||+|||++|.+|++|++|+|+|+|+|||||.|||+|++++|++|.+|++
T Consensus 14 ~~~~~~~l~~~DPev~~ii~~Ek~RQ~~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~ 93 (477)
T KOG2467|consen 14 IKLGNTPLEEVDPEVHDIIEKEKERQKRGIELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQK 93 (477)
T ss_pred hhhhcCchhhcChHHHHHHHHHHHhhhcceeEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC
Q 016668 156 RALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (385)
Q Consensus 156 ~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 235 (385)
|+.+.||++++.||||||+.|||.||++++.++++|+|+||.+|+++|||++|||+++.++++..+.+|+..||.+|+++
T Consensus 94 RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~T 173 (477)
T KOG2467|consen 94 RALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPST 173 (477)
T ss_pred HHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCcc
Q 016668 236 GLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS 315 (385)
Q Consensus 236 ~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~ 315 (385)
|.||||.||+.+..+|||+||+|.|.|++.+|++++++||+++|++|++|+||.+||++.++.|+||++||||++||||+
T Consensus 174 G~IDYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKs 253 (477)
T KOG2467|consen 174 GYIDYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKS 253 (477)
T ss_pred CceehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccEEEEEEeCCCC---------chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 316 LRGPRGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 316 l~GprgG~I~~~~~~~---------~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
|+|||||+||+++... .+|+++++|++++||++|||||+|+|+|+|+||+++.++||++|++||++|.
T Consensus 254 LRGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Na 330 (477)
T KOG2467|consen 254 LRGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNA 330 (477)
T ss_pred ccCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 9999999999999632 4789999999999999999999999999999999999999999999999984
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-78 Score=583.59 Aligned_cols=289 Identities=57% Similarity=0.882 Sum_probs=282.4
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~l 160 (385)
..|...||+++++|++|..||+..|+||+|||++|+.|+++++|.|+|+|+|||||.|||+||+++|++|.+|.++++++
T Consensus 5 ~~l~~~d~~i~~~i~~e~~rq~~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~L 84 (413)
T COG0112 5 ASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKL 84 (413)
T ss_pred hhHHhcCHHHHHHHHHHHHHHhhceeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCH
Q 016668 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (385)
Q Consensus 161 fg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~ 240 (385)
||+++ +||||+||+.||.+++.+|++|||+||.+++.||||++|++ +++++|..|+.++|++|++++.||+
T Consensus 85 Fga~~----anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~-----~v~~sG~~~~~v~Y~vd~et~~IDy 155 (413)
T COG0112 85 FGAEY----ANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGS-----PVNFSGKLFNVVSYGVDPETGLIDY 155 (413)
T ss_pred hCCCc----cccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCC-----CCCccceeEEeEecccccccCccCH
Confidence 99998 69999999999999999999999999999999999999995 6789999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCcccc
Q 016668 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR 320 (385)
Q Consensus 241 d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gpr 320 (385)
|+++++++++|||+||+|.|.|++.+|++++++||+++|++|++|+||.+||+++|.+|+|+++|||||+||||||+|||
T Consensus 156 D~~~k~a~e~kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPr 235 (413)
T COG0112 156 DEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPR 235 (413)
T ss_pred HHHHHHHHHhCCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 321 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
||+|+++++ ++.++|++++||++||||++|.|||+++|++|+++++|++|++||++|.
T Consensus 236 GG~Il~~~e-----el~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NA 293 (413)
T COG0112 236 GGIILTNDE-----ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNA 293 (413)
T ss_pred ceEEEeccH-----HHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 999999986 8999999999999999999999999999999999999999999999985
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-72 Score=557.05 Aligned_cols=301 Identities=58% Similarity=0.947 Sum_probs=253.0
Q ss_pred cccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC
Q 016668 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN 162 (385)
Q Consensus 83 l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg 162 (385)
|++.||++++++++|..||+++|+||||||++||.|++++++.|+|+|+||||+.|||+|++++|++|++|+++++++||
T Consensus 1 l~~~d~ei~~li~~e~~rq~~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~ 80 (399)
T PF00464_consen 1 LKEFDPEIYELIEKEEERQRSTLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG 80 (399)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHSEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHHhcCccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHH
Q 016668 163 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM 242 (385)
Q Consensus 163 ~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~ 242 (385)
+++++|+++|++.||+.||++++.+|++|||+||.+++.+|||++|++....+++...|..++.++|++|++++.||+|+
T Consensus 81 ~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~ 160 (399)
T PF00464_consen 81 AEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDE 160 (399)
T ss_dssp -STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHH
T ss_pred CCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHH
Confidence 99889999999999999999999999999999999999999999999866555566688889999999998899999999
Q ss_pred HHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccEE
Q 016668 243 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322 (385)
Q Consensus 243 le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~GprgG 322 (385)
+++++++++||+|+++.|+|++.+|+++|++||+++|++|++|++|.+||+++|.+|+||++|||+++||||||+|||||
T Consensus 161 l~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrgg 240 (399)
T PF00464_consen 161 LEKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGG 240 (399)
T ss_dssp HHHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-E
T ss_pred HHHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCC--------chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 323 MIFFKKDPV--------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 323 ~I~~~~~~~--------~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
+|+++++.. .-+++.++|++++||++||+||+|.+||+|++|+|+++++|++|++||++|.
T Consensus 241 iI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NA 309 (399)
T PF00464_consen 241 IILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNA 309 (399)
T ss_dssp EEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred EEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 999992210 0138999999999999999999999999999999999999999999999985
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-71 Score=560.71 Aligned_cols=305 Identities=62% Similarity=1.070 Sum_probs=287.4
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
....|++.||+++++|++|+.||+++|+||||||++|+.|+++++++|+|+|+|||||.|||+|++++|++|.+|.++++
T Consensus 125 ~~~~l~~~Dpei~~li~~E~~rQ~~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~ 204 (586)
T PLN02271 125 GNQPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERAL 204 (586)
T ss_pred HhccHhhhCHHHHHHHHHHHHHHhcCeeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccc-cccccCcceEEEEeccccCCCCC
Q 016668 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPK-RRVSGTSIYFESMPYRLDESTGL 237 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~-~~~~~~g~~~~~i~~~~~~~~~~ 237 (385)
++||+++++|++||++.||+.||++++.+|++|||+||.++++||||++|+++... .+++..|..++.++|++|++++.
T Consensus 205 ~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~ 284 (586)
T PLN02271 205 AAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGY 284 (586)
T ss_pred HHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCc
Confidence 99999998999999999999999999999999999999999999999999975422 35678899999999999888999
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCc
Q 016668 238 VDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR 317 (385)
Q Consensus 238 iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~ 317 (385)
||+|++++.+..++||+|+++.+.|++.+|+++|++||+++|++|++|+||.+|+++.+.+++|++++|++++|+||||+
T Consensus 285 IDyd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLr 364 (586)
T PLN02271 285 IDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLR 364 (586)
T ss_pred cCHHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCC
Confidence 99999999777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEeCCCC--------------chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 318 GPRGGMIFFKKDPV--------------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 318 GprgG~I~~~~~~~--------------~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
||+||+|+++++.. ..+++.++|++++||++|||||+|.|||+++|++++..++|++|++||++|.
T Consensus 365 GPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NA 444 (586)
T PLN02271 365 GPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNA 444 (586)
T ss_pred CCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 99999999987421 2357899999999999999999999999999999999999999999999985
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-58 Score=463.19 Aligned_cols=287 Identities=44% Similarity=0.731 Sum_probs=269.3
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~l 160 (385)
..|++.||+++++|++|..||+++|+||||||++|+.|++++++.++|+|+|||||.|||+|++++|++|.+|.++++++
T Consensus 28 ~~l~~~d~~~~~~~~~e~~rq~~~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~l 107 (493)
T PRK13580 28 DVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKEL 107 (493)
T ss_pred HHHHhhCHHHHHHHHHHHHHHhcCceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceeecCCcHHHHHHHHHHhccC-------------------------------CCEEeecCCCCCccccCC
Q 016668 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKP-------------------------------HDRIMGLDLPHGGHLSHG 209 (385)
Q Consensus 161 fg~~~~~~~~~V~~~sGs~A~~~a~~all~p-------------------------------GD~Vl~~~~~~ggh~s~~ 209 (385)
||+++ ++|++.||+.||++++.++++| ||+||.+++.+|||++|+
T Consensus 108 f~a~~----anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg 183 (493)
T PRK13580 108 FGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHG 183 (493)
T ss_pred hCCCc----ccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecC
Confidence 99998 5999999999999999999987 899999999999999999
Q ss_pred ccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEecccc
Q 016668 210 FMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHI 289 (385)
Q Consensus 210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~ 289 (385)
+ ..++.|..++..+|+++++++.+|++++++++++.+|++++++.|++++..|+++|+++|+++|++|++|+||+
T Consensus 184 ~-----~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~ 258 (493)
T PRK13580 184 F-----RPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHF 258 (493)
T ss_pred c-----ccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECchh
Confidence 6 55678888899999999888999999999999888888999999999999999999999999999999999999
Q ss_pred ccccccCccc---CCCCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 290 SGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 290 ~Gli~~g~~~---~p~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
+|++..+..+ +++.++||+++|+||+|+||+||+|++++ ++.+.++++ .|+++|+|+++.++|+++++++
T Consensus 259 ~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~------~l~~~L~~a-~P~i~gg~l~p~iAA~avAl~e 331 (493)
T PRK13580 259 AGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK------EYADAVDKG-CPLVLGGPLPHVMAAKAVALAE 331 (493)
T ss_pred hceeccccchhhcCCCCCCcEEEeCChhhccCCCeEEEEecH------HHHHHHhhC-CCcccCCCccHHHHHHHHHHHH
Confidence 9999866554 56678999999999999999999999987 688889877 4899999999999999999999
Q ss_pred hhCchHHHHHHHHhccc
Q 016668 367 AQSPEFKVYQNKSACKP 383 (385)
Q Consensus 367 ~~~~~~~~y~~~v~~~~ 383 (385)
+.+++|++|++||++|.
T Consensus 332 ~~~~ef~~y~~~l~~Na 348 (493)
T PRK13580 332 ARTPEFQKYAQQVVDNA 348 (493)
T ss_pred HhCccHHHHHHHHHHHH
Confidence 99999999999999984
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-56 Score=454.71 Aligned_cols=306 Identities=76% Similarity=1.225 Sum_probs=279.7
Q ss_pred hhhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 016668 78 FVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (385)
Q Consensus 78 ~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~l 157 (385)
++...|++.||+++++|++|..||+.+|+||||||++|+.|++++++.++++|++|||++|||+|++++|++|++|++++
T Consensus 10 ~~~~~~~~~d~~~~~~i~~e~~~q~~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~ 89 (475)
T PLN03226 10 WGNAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRA 89 (475)
T ss_pred cchhhhhhcCHHHHHHHHHHHHHHHcCeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHH
Confidence 45566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCC
Q 016668 158 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL 237 (385)
Q Consensus 158 a~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ 237 (385)
+++|+.+++.|.++|+++||+.||.+++.+|++|||+|++++..+|||++|++......++..+..++.++|.++++++.
T Consensus 90 ~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~ 169 (475)
T PLN03226 90 LEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGL 169 (475)
T ss_pred HHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCC
Confidence 99999998888889999999999999999999999999999999999999987544334556677778888888888899
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCc
Q 016668 238 VDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLR 317 (385)
Q Consensus 238 iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~ 317 (385)
+|+++|++++..++||+|+++.++|++..|+++|+++|+++|++|++|+||++|++..+..++|++++|++++|+||||+
T Consensus 170 iD~d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~ 249 (475)
T PLN03226 170 IDYDKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLR 249 (475)
T ss_pred cCHHHHHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCccccc
Confidence 99999999997778999988888899999999999999999999999999999999888788888899999999999999
Q ss_pred cccEEEEEEeCCCC--------chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 318 GPRGGMIFFKKDPV--------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 318 GprgG~I~~~~~~~--------~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
||+||+|+++++.+ ..+++.+.++.+.||+++++|+++.++|+++|++++..++|++|++|+++|.
T Consensus 250 GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na 323 (475)
T PLN03226 250 GPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANA 323 (475)
T ss_pred CCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 99999999987522 1125666788899999999999999999999999999999999999999874
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=389.59 Aligned_cols=302 Identities=69% Similarity=1.135 Sum_probs=264.5
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
+...|++.||++++++.+|.+||+++|+||+|||++||.|++++.+.++++|++|+|+++|+.|++..+.+|+.++++++
T Consensus 11 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a 90 (452)
T PTZ00094 11 LNQSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRAL 90 (452)
T ss_pred hhhhHhhhCHHHHHHHHHHHHHHHcCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCC
Q 016668 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~i 238 (385)
++||+++++|.++++++||+.||.+++.++++|||+|++.+.+||+|++++...........+..++..+++++. ++.+
T Consensus 91 ~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~g~i 169 (452)
T PTZ00094 91 EAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE-KGLI 169 (452)
T ss_pred HHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC-CCCc
Confidence 999999877767888899999999999999999999999999999999875321111223345556666777774 4899
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCcc
Q 016668 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318 (385)
Q Consensus 239 D~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~G 318 (385)
|+++++++++..+|++|+++.+.++...|+++|.++|+++|+++++|++|++|++..+..+.++.++|++++|+||||+|
T Consensus 170 d~~~L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~G 249 (452)
T PTZ00094 170 DYDKLEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRG 249 (452)
T ss_pred CHHHHHHHHHHhCCCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCC
Confidence 99999999976689998887778999999999999999999999999999999998776677777999999999999999
Q ss_pred ccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 319 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 319 prgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
|+||+++++++.. ..+..+++...||.++|+++.+.++|+++|++++...++++|++++.+++
T Consensus 250 P~Gg~l~~~~~~~--~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~ 312 (452)
T PTZ00094 250 PRSGLIFYRKKVK--PDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNA 312 (452)
T ss_pred CCceEEEEecccc--hHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 9999999977521 13556777788999999999999999999999998888899999988753
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=357.33 Aligned_cols=293 Identities=58% Similarity=0.881 Sum_probs=257.7
Q ss_pred chhhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 016668 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (385)
Q Consensus 77 ~~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~ 156 (385)
.|+++.|++.||+++++|++|..+|.++|+|++|||+++|.|++++.+.+.++|..|++|+|+++|++.+++||++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~ 82 (416)
T PRK13034 3 FFFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIER 82 (416)
T ss_pred chhhhhHhhhCHHHHHHHHHHHHHHhcCeeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC
Q 016668 157 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (385)
Q Consensus 157 la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 236 (385)
++++||.++ +.+.+.||+.||.+++.++++|||+|++.+..|+++..+|. .....+..++...+++++.++
T Consensus 83 la~l~g~~~----alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~ 153 (416)
T PRK13034 83 AKQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGA-----KVSLSGKWYNAVQYGVDRLTG 153 (416)
T ss_pred HHHHhCCCc----eEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCC-----cceeccceeeeEEcccccccC
Confidence 999999987 46777899999999999999999999999998888765553 222334444445677776677
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccC
Q 016668 237 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316 (385)
Q Consensus 237 ~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l 316 (385)
.+|++++++.++..+||+|+++.+.++...|+++|.++|+++|++|++|+||+.|+...|..+.++.++|++++|+||+|
T Consensus 154 ~~d~~~le~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l 233 (416)
T PRK13034 154 LIDYDEVEELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTL 233 (416)
T ss_pred CcCHHHHHHHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccC
Confidence 89999999988666789999877889999999999999999999999999999999887776666678999999999999
Q ss_pred ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 317 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 317 ~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
+||.||+++++++ ++.++++...|++++++++++.+++++.++.++..+++.+|++++.+|.
T Consensus 234 ~g~~GG~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a 295 (416)
T PRK13034 234 RGPRGGMILTNDE-----EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANA 295 (416)
T ss_pred CCCCCeEEEECcH-----HHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 9999999999875 6777788888998888899999999999999988777788999998774
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=315.84 Aligned_cols=287 Identities=62% Similarity=0.984 Sum_probs=244.0
Q ss_pred ccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 016668 84 GEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL 163 (385)
Q Consensus 84 ~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~ 163 (385)
+++|++++++|.+|..+++++|+|++++|++++.|++++...+..+|..|+++.++|.|.+..+++|+.+++++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~ 80 (402)
T cd00378 1 ADVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGA 80 (402)
T ss_pred CCcCHHHHHHHHHHHHHHHhCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999999999999999999999888899999999999999999999999889999999999
Q ss_pred CCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHH
Q 016668 164 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 243 (385)
Q Consensus 164 ~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~l 243 (385)
++ ..|.++||+.|+..++.++++|||+|++.++.|++|++++... .+...|..+..++++.+++++.+|++++
T Consensus 81 ~~----~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~id~~~l 153 (402)
T cd00378 81 EY----ANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDAL 153 (402)
T ss_pred Cc----eeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccc---cccccceeEEEecCCcCcccCCcCHHHH
Confidence 86 3577788999999999999999999999999998887764311 1345666566666555433678999999
Q ss_pred HHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccEEE
Q 016668 244 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM 323 (385)
Q Consensus 244 e~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~GprgG~ 323 (385)
++.+...++|+|+++.+++|...|+++|.++|+++|+++++|++|+.|++..|..+.++.++|++++|+||+|+||+||+
T Consensus 154 ~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~ 233 (402)
T cd00378 154 EKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGL 233 (402)
T ss_pred HHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceE
Confidence 99986568999998888899888999999999999999999999999887766555555578999999999999999999
Q ss_pred EEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 324 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
++++++ ++.+++.....++..++++...+++++.++.+....++.++.+++.++
T Consensus 234 i~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 287 (402)
T cd00378 234 ILTRKG-----ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVEN 287 (402)
T ss_pred EEeccH-----HHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999875 677888777777778888888999999999887765566776666554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=315.34 Aligned_cols=290 Identities=57% Similarity=0.871 Sum_probs=243.3
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
+-.+|++.||+++++|+++..+++..++|++++|++++.|++++...+.++|..|+++++++.|.+..+.+|+.++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la 81 (416)
T PRK00011 2 FMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAK 81 (416)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHhcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999988888898899999999999999999998999999
Q ss_pred HHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCC
Q 016668 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~i 238 (385)
+++|++.. .|.++|||.|+..++.++++|||+|++++++|++|++++. ...+.+...+++.++++.+++.+
T Consensus 82 ~~~g~~~~----~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~ 152 (416)
T PRK00011 82 ELFGAEYA----NVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGS-----PVNFSGKLYNVVSYGVDEETGLI 152 (416)
T ss_pred HHhCCCce----eeecCCchHHHHHHHHHhcCCCCEEEEeccccCCcccccc-----ccccccceeeEeecCcCcccCCc
Confidence 99999873 5667889999999999999999999999999988766542 11222323345555566556789
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCcc
Q 016668 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318 (385)
Q Consensus 239 D~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~G 318 (385)
|++++++.+++.+||+|+++.+++|...|+++|.++|+++|+++++|++|+.|++..|..+.+++++|++++|+||+|+|
T Consensus 153 d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g 232 (416)
T PRK00011 153 DYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRG 232 (416)
T ss_pred CHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCC
Confidence 99999999976579999887778888889999999999999999999999988876555555556889999999999999
Q ss_pred ccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 319 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 319 prgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
|+||+++++++ ++.+++....+++..+++..+.++++..++.++..+.+.++.+++.+|
T Consensus 233 ~~gg~i~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~ 291 (416)
T PRK00011 233 PRGGLILTNDE-----ELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKN 291 (416)
T ss_pred CCceEEEeCCH-----HHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999765 688888877777777788888999988888887755556666666554
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=210.90 Aligned_cols=239 Identities=25% Similarity=0.319 Sum_probs=175.8
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC-CCCcceeecCCc-HHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSG-SPANFEVYT 186 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~-~~~~~~V~~~sG-s~A~~~a~~ 186 (385)
+.....|..|++++...+.+.+.+...+ .+.-.....+..+.+|+.+++++|+++ + +|.++.| |.|+..+..
T Consensus 29 aa~~~~p~~V~~a~~~~~~~~~an~~r~--~~~~~~~~t~~~e~aRe~va~~~~a~~~~----eIvft~~tT~aln~va~ 102 (405)
T COG0520 29 AATSQKPQAVLDAVAEYYRRYNANVHRG--AHTLAEEATDLYEAAREAVARFLNADSSD----EIVFTRGTTEALNLVAR 102 (405)
T ss_pred cccccCCHHHHHHHHHHHHhhcCCcCcc--cchHHHHHHHHHHHHHHHHHHHhCCCCCC----eEEEeCChhHHHHHHHH
Confidence 3344468999999988776555433222 122233344455568999999999995 4 4556655 469999999
Q ss_pred Hh---ccCCCEEeecCCCCCccccCCccccccc-cccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-
Q 016668 187 AI---LKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (385)
Q Consensus 187 al---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~-~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~- 261 (385)
++ +++||+|++.+.+|.++.. +|.. ....|..+++++ ++ +++.+|.|++++.+.+ ++|+|.++..+
T Consensus 103 ~l~~~~~~gdeIv~s~~EH~sn~~-----pw~~~~~~~Ga~v~~i~--~~-~~g~~~~~~~~~~i~~-~Tklvais~vSn 173 (405)
T COG0520 103 GLGRSLKPGDEIVVSDLEHHSNIV-----PWQELAKRTGAKVRVIP--LD-DDGLLDLDALEKLITP-KTKLVALSHVSN 173 (405)
T ss_pred HhhhhhcCCCEEEEccCcchhhHH-----HHHHHHHhcCcEEEEEe--cC-CCCCcCHHHHHHhcCC-CceEEEEECccc
Confidence 88 7999999999998866543 2222 234577777776 55 5789999999998865 89999886533
Q ss_pred -CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 262 -~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
.|...|+++|+++||++|+++++|++|++|.. +..++ ++|++++|.||||.||.| |+++++++ +.
T Consensus 174 ~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~-----~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~------~l 242 (405)
T COG0520 174 VTGTVNPVKEIAELAHEHGALVLVDAAQAAGHL-----PIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKE------LL 242 (405)
T ss_pred cccccchHHHHHHHHHHcCCEEEEECccccCcc-----CCCchhcCCCEEEEcccccccCCCceEEEEEchH------HH
Confidence 57889999999999999999999999988754 33444 899999999999999988 88888885 43
Q ss_pred HHHh---------------------hccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 338 SAIN---------------------NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 338 ~~i~---------------------~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
+.+. .......-|+|+...+.+++.|++.+...++.
T Consensus 243 ~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~ 299 (405)
T COG0520 243 EELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGME 299 (405)
T ss_pred hhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHH
Confidence 3331 11122234788899999999999987766654
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=198.81 Aligned_cols=233 Identities=18% Similarity=0.144 Sum_probs=170.0
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTA 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~a 187 (385)
.++..+|+.+++++...+.+... .|.. ..|.+ +|++.+.+++.+.+|++.+ ...+|..|+|+ +|++.++.+
T Consensus 37 ~Pd~~~p~~i~~a~~~a~~~~~~-~Y~~---~~G~~---~LReaia~~~~~~~~~~~~-~~~eiivt~Ga~~al~~~~~a 108 (393)
T COG0436 37 EPDFPTPEHIIEAAIEALEEGGT-HYTP---SAGIP---ELREAIAEKYKRRYGLDVD-PEEEIIVTAGAKEALFLAFLA 108 (393)
T ss_pred CCCCCCCHHHHHHHHHHHhcccC-CCCC---CCCCH---HHHHHHHHHHHHHhCCCCC-CCCeEEEeCCHHHHHHHHHHH
Confidence 55678899999999887665321 2221 23655 8999999999999996542 22347777776 599999999
Q ss_pred hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--C
Q 016668 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--D 265 (385)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~ 265 (385)
+++|||+|++++|.|..|.. .+.+.|.....++....++++.+|+++|++.+++ ++|+|++++|+||+ .
T Consensus 109 ~~~pGDeVlip~P~Y~~y~~--------~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTGav 179 (393)
T COG0436 109 LLNPGDEVLIPDPGYPSYEA--------AVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILNSPNNPTGAV 179 (393)
T ss_pred hcCCCCEEEEeCCCCcCHHH--------HHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcCcC
Confidence 99999999999996654422 4567787655555322113679999999999987 89999999999984 2
Q ss_pred ---CCHHHHHHHHHHcCcEEEEeccccccccccCc-ccCCCC--C-Cc--EEEECCCccC--ccccEEEEEEeCCCCchh
Q 016668 266 ---FDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--Y-CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGV 334 (385)
Q Consensus 266 ---~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p~~--g-aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~ 334 (385)
..+++|+++|++||++||+|+++ .++++.+. +++.++ . .| |++.|++|++ +|||.||++++++
T Consensus 180 ~~~~~l~~i~~~a~~~~i~ii~DEiY-~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~----- 253 (393)
T COG0436 180 YSKEELKAIVELAREHDIIIISDEIY-EELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPE----- 253 (393)
T ss_pred CCHHHHHHHHHHHHHcCeEEEEehhh-hhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChH-----
Confidence 35889999999999999999995 88998874 555554 3 24 6789999996 8999999999943
Q ss_pred HHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 335 ELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 335 ~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+.+.+..-....+.+...+.|+.+ ||+
T Consensus 254 ~l~~~~~~~~~~~~~~~~~~~Q~aa~~-aL~ 283 (393)
T COG0436 254 ELIAALRKLKSYLTSCAPTPAQYAAIA-ALN 283 (393)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHH-Hhc
Confidence 566665533323333456666665544 554
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=197.29 Aligned_cols=236 Identities=20% Similarity=0.264 Sum_probs=172.9
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
+..+++.|+|+++|...++..| |+|.+-+..|.+..+.+|+ +++.+++++|+++.+ .+++++||++|++++.+.
T Consensus 8 ~ATTp~~~~v~~~m~~~~~~~f--gNPsS~H~~G~~A~~~ve~-AR~~iA~llga~~~e---IiFTSG~TEsnNlaI~g~ 81 (386)
T COG1104 8 AATTPVDPEVLEAMLPYLTEVF--GNPSSLHSFGREARKAVEE-AREQIAKLLGADPEE---IIFTSGATESNNLAIKGA 81 (386)
T ss_pred cccCCCCHHHHHHHHHHHHhhc--CCccchhHhHHHHHHHHHH-HHHHHHHHhCCCCCe---EEEecCCcHHHHHHHHhh
Confidence 4567889999999999988775 7888877668877777776 899999999999852 344555788999888873
Q ss_pred --c----cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-
Q 016668 189 --L----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (385)
Q Consensus 189 --l----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~- 261 (385)
. +.|.+|+++..+|.+.+... +.+...|..+.+++ ++. +|.+|+++|++++++ ++.||.+...|
T Consensus 82 ~~a~~~~~~~~HIIts~iEH~aVl~~~-----~~Le~~g~~Vtyl~--V~~-~G~v~~e~L~~al~~-~T~LVSim~aNn 152 (386)
T COG1104 82 ALAYRNAQKGKHIITSAIEHPAVLNTC-----RYLERQGFEVTYLP--VDS-NGLVDLEQLEEALRP-DTILVSIMHANN 152 (386)
T ss_pred HHhhhcccCCCeEEEcccccHHHHHHH-----HHHHhcCCeEEEeC--CCC-CCeEcHHHHHHhcCC-CceEEEEEeccc
Confidence 2 25789999988875543211 22233465455444 663 799999999999965 56676554443
Q ss_pred -CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 262 -~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
.|..+|+++|.++|+++|+++++|++|+.|-+ |-.++ ++|++++|.|| |.||+| |+++.+++. .+.
T Consensus 153 E~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gki-----pi~~~~~~vD~ls~SaHK-~~GpkGiGaLyv~~~~----~~~ 222 (386)
T COG1104 153 ETGTIQPIAEIGEICKERGILFHVDAVQAVGKI-----PIDLEELGVDLLSFSAHK-FGGPKGIGALYVRPGV----RLE 222 (386)
T ss_pred CeeecccHHHHHHHHHHcCCeEEEehhhhcCce-----eccccccCcceEEeehhh-ccCCCceEEEEECCCC----ccC
Confidence 58899999999999999999999999988754 33343 69999999999 789999 888886652 121
Q ss_pred HHHhh-ccCCCc-cCCChHHHHHHHHHHHHHhhC
Q 016668 338 SAINN-AVFPGL-QGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 338 ~~i~~-~~fp~~-qg~p~~~~iaala~Al~e~~~ 369 (385)
..+.- ....+. .|+.+.+.|+|++.|++++.+
T Consensus 223 p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~ 256 (386)
T COG1104 223 PLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVE 256 (386)
T ss_pred ceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 11111 111111 356788999999999987764
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=194.50 Aligned_cols=213 Identities=19% Similarity=0.129 Sum_probs=150.9
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
+++.++++||++. +.+.+.++|.|+.+++.++++|||+|++..+.|.++. ..+...|..+..++.+.+
T Consensus 64 ~~~~~A~~~ga~~----~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~--------~~~~~~g~~~~~v~~~~~ 131 (294)
T cd00615 64 AQELAARAFGAKH----TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVI--------NGLVLSGAVPVYLKPERN 131 (294)
T ss_pred HHHHHHHHhCCCC----EEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHH--------HHHHHCCCEEEEecCccC
Confidence 5667899999876 3344555567999999999999999999987554331 134456766555554333
Q ss_pred CC---CCCCCHHHHHHHhhh-cCCcEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCC-CC-CC
Q 016668 233 ES---TGLVDYDMLEKTAIL-FRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP-FK-YC 305 (385)
Q Consensus 233 ~~---~~~iD~d~le~~i~~-~~pklIi~~~s~-~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p-~~-ga 305 (385)
++ .+.+|++++++.+++ .++|+|++..++ +|...|+++|+++|+++|+++++|++|+.++.+.+..+.. .. ++
T Consensus 132 ~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~ 211 (294)
T cd00615 132 PYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGA 211 (294)
T ss_pred cccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCC
Confidence 22 147999999999864 357888776554 4678899999999999999999999998766554433322 23 79
Q ss_pred cEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 306 DVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 306 Div~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
|++++|+||+++||++ |++..+++.. ..+++.........++|+...++++..|++.+.. +..++.++++++
T Consensus 212 div~~S~hK~l~g~~~~~~l~~~~~~~----~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~-~g~~~~~~~~~~ 284 (294)
T cd00615 212 DIVVQSTHKTLPALTQGSMIHVKGDLV----NPDRVNEALNLHQSTSPSYLILASLDVARAMMAL-EGKELVEELIEL 284 (294)
T ss_pred cEEEEchhcccchHhHHHHHHhCCCcC----CHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 9999999999999865 6666665421 1233444433344578999999999999987743 335566666543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=197.54 Aligned_cols=267 Identities=15% Similarity=0.195 Sum_probs=176.9
Q ss_pred hcccCChHHHHHHHHHHHHh-hhccccc---cCC----CCCcH---HHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHH
Q 016668 82 SLGEADPEVCEIITKEKERQ-FKSLELI---ASE----NFTSR---AVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELE 150 (385)
Q Consensus 82 ~l~~~dp~~~~~i~~e~~~~-~~~l~Li---ase----n~~s~---~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le 150 (385)
+++.+.|..+.-++++..+. ..+.++| ..+ -.++. .+.+++...+... .+. |.+.+.+.+|+
T Consensus 12 r~~~v~~~~~~~~~~~~~~l~~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g-~~~------Y~~~~g~~~Lr 84 (460)
T PRK13238 12 RIKMVEPIRLTTREERERALAEAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRG-DEA------YAGSRSYYRLE 84 (460)
T ss_pred eeceeccccccCHHHHHHHHHHcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhC-Ccc------cCCCCCHHHHH
Confidence 34556665554444433333 2455555 322 22322 4666666555321 122 33444445676
Q ss_pred HHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecc
Q 016668 151 TLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (385)
Q Consensus 151 ~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~ 230 (385)
+ .++++||.++ .+.+.+|+.|+..++.++++||| |+++++.+..+. ..+.+.|.....++.+
T Consensus 85 e----aia~~~~~~~-----vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~--------~~i~~~G~~~v~v~~~ 146 (460)
T PRK13238 85 D----AVKDIFGYPY-----TIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTR--------AHIELNGATAVDLVID 146 (460)
T ss_pred H----HHHHHhCCCc-----EEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchH--------HHHHHcCCEEEEEecc
Confidence 5 5778888765 36677889999999999999999 887765332221 1345667765555532
Q ss_pred c-------cCCCCCCCHHHHHHHhhh---cCCcEEEEcCCCCCC---CC---CHHHHHHHHHHcCcEEEEecccccc-cc
Q 016668 231 L-------DESTGLVDYDMLEKTAIL---FRPKLIIAGASAYPR---DF---DYPRMRQIADAVGALLMMDMAHISG-LV 293 (385)
Q Consensus 231 ~-------~~~~~~iD~d~le~~i~~---~~pklIi~~~s~~~~---~~---dl~~I~~ia~~~ga~livD~ah~~G-li 293 (385)
- ++.++.+|+++|++.+++ .++|+|+++.++|+. .. ++++|+++|+++|++|++|+||..+ +.
T Consensus 147 ~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~ 226 (460)
T PRK13238 147 EALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAY 226 (460)
T ss_pred ccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhh
Confidence 1 112346999999999975 357899998877652 33 4689999999999999999999653 22
Q ss_pred cc-----CcccCC--------CCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhccCC--C--ccCCChHHH
Q 016668 294 AA-----SVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFP--G--LQGGPHNHT 356 (385)
Q Consensus 294 ~~-----g~~~~p--------~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp--~--~qg~p~~~~ 356 (385)
+. +..... ..++|++++|++|.+.+|.||+|+++++ ++.++++...+. + .+++++...
T Consensus 227 f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~-----~l~~~~~~~~~~~~g~~t~~g~~~~~ 301 (460)
T PRK13238 227 FIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDE-----DLFTECRTLCILYEGFPTYGGLAGRD 301 (460)
T ss_pred hhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChH-----HHHHHhhhcccccCCcccccCcHHHH
Confidence 21 111111 2368999999999999999999999975 788888776532 2 467778888
Q ss_pred HHHHHHHHHHhhCchHHHHHHH
Q 016668 357 IGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 357 iaala~Al~e~~~~~~~~y~~~ 378 (385)
.+|++++|+++..++|.+|+.+
T Consensus 302 ~~Ala~~l~e~~~~~~~~~~~~ 323 (460)
T PRK13238 302 MEALAVGLYEGMDEDYLAYRIG 323 (460)
T ss_pred HHHHHhhHHHhhChHHHHHHHH
Confidence 9999999999888887666544
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-21 Score=187.60 Aligned_cols=243 Identities=15% Similarity=0.068 Sum_probs=168.1
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+++++++...++.|.+++...+. .+ ++ +...++.+.+++++++++|++..+ +.+.+.||++|+..+
T Consensus 1 ~~~~~~~~~~~~~v~~a~~~~~~-----~~---~~----~~~~~~~~~~~~~la~~~g~~~~~--~~~~~~~~t~al~~~ 66 (356)
T cd06451 1 LLLIPGPSNVPPRVLKAMNRPML-----GH---RS----PEFLALMDEILEGLRYVFQTENGL--TFLLSGSGTGAMEAA 66 (356)
T ss_pred CcccCCCcCCCHHHHHHhCCCcc-----CC---CC----HHHHHHHHHHHHHHHHHhcCCCCC--EEEEecCcHHHHHHH
Confidence 46889999999999999964321 11 11 112244445677899999995421 234566778999999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC--C
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--Y 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~--~ 262 (385)
+.++++|||+|++.++.| +++.+. ..+...|..+..++ .++ ++.+|++++++.+++++|++|++..++ +
T Consensus 67 ~~~~~~~g~~vl~~~~~~---~~~~~~---~~~~~~g~~~~~v~--~~~-~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~ 137 (356)
T cd06451 67 LSNLLEPGDKVLVGVNGV---FGDRWA---DMAERYGADVDVVE--KPW-GEAVSPEEIAEALEQHDIKAVTLTHNETST 137 (356)
T ss_pred HHHhCCCCCEEEEecCCc---hhHHHH---HHHHHhCCCeEEee--cCC-CCCCCHHHHHHHHhccCCCEEEEeccCCCc
Confidence 999999999999987643 221110 12345676555555 443 468999999999865578998876554 4
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i 340 (385)
+...|+++|.++|+++|+++++|++|+.|... .+... ++|++++|+||+|.+|.| |+++.++ ++.+.+
T Consensus 138 G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~----~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~------~~~~~~ 207 (356)
T cd06451 138 GVLNPLEGIGALAKKHDALLIVDAVSSLGGEP----FRMDEWGVDVAYTGSQKALGAPPGLGPIAFSE------RALERI 207 (356)
T ss_pred ccccCHHHHHHHHHhcCCEEEEeeehhccCcc----ccccccCccEEEecCchhccCCCCcceeEECH------HHHHHH
Confidence 57789999999999999999999999766321 11222 789999999999998876 8888877 455554
Q ss_pred hh--ccC----------------CCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHh
Q 016668 341 NN--AVF----------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSA 380 (385)
Q Consensus 341 ~~--~~f----------------p~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~ 380 (385)
.. ... ....++++...++++..+++.+....+++..+++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~ 265 (356)
T cd06451 208 KKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHR 265 (356)
T ss_pred HhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 42 000 02345677788888888888766555544444443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=187.82 Aligned_cols=240 Identities=22% Similarity=0.274 Sum_probs=168.4
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
++..++|+.|++++...+.+.+..+..+. +..+.+..+.++ .+++.+++++|+++++ ..+++.++|.|+..++.++
T Consensus 6 ~~~~~~p~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~r~~la~~lg~~~~~--~v~~~~~~t~a~~~~~~~l 81 (371)
T PF00266_consen 6 AGTGPMPKSVLEAISDYLRNFYANPHSGV-SHRSREFAEILE-EAREALAKLLGAPPDE--EVVFTSNGTEALNAVASSL 81 (371)
T ss_dssp SSS-B-BHHHHHHHHHHHHHSGSSTSTSS-STTSHHHHHHHH-HHHHHHHHHHTSSTTE--EEEEESSHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHhhhcCcccc-cchhhhhhHHHH-HHHHHHHHhcCCcccc--ccccccccchhhhhhhhcc
Confidence 66778899999999988877665432222 222444444444 5899999999999821 2345566677999999999
Q ss_pred ---ccCCCEEeecCCCCCccccCCccccccc-cccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC--CCC
Q 016668 189 ---LKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SAY 262 (385)
Q Consensus 189 ---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~-~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~--s~~ 262 (385)
+++||+|++.+.+|.+... .+.. ....|..+..++. + .++.+|++++++.+. .++++|++.. +.+
T Consensus 82 ~~~~~~g~~vl~~~~~~~s~~~-----~~~~~~~~~g~~v~~i~~--~-~~~~~~~~~~~~~l~-~~~~lv~~~~~~~~t 152 (371)
T PF00266_consen 82 LNPLKPGDEVLVTSNEHPSNRY-----PWEEIAKRKGAEVRVIPA--D-PGGSLDLEDLEEALN-PDTRLVSISHVENST 152 (371)
T ss_dssp HHHGTTTCEEEEEESSHHHHHH-----HHHHHHHHTTEEEEEEEE--G-TTSSCSHHHHHHHHH-TTESEEEEESBETTT
T ss_pred cccccccccccccccccccccc-----ccccccccchhhhccccc--c-ccchhhhhhhhhhhc-cccceEEeecccccc
Confidence 8999999998875544321 1112 2356776666663 3 356899999999997 4889987754 346
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~ 339 (385)
|...|+++|.++||++|+++++|++|+.|.. +-+++ ++|++++|.|| |.||+| |+++.+++ ..++
T Consensus 153 G~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~-----~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~------~~~~ 220 (371)
T PF00266_consen 153 GVRNPIEEIAKLAHEYGALLVVDAAQSAGCV-----PIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPE------AIER 220 (371)
T ss_dssp TBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS-----S--TTTTTESEEEEESTS-TTSSSTEEEEEEEHH------HHHH
T ss_pred cEEeeeceehhhhhccCCceeEechhccccc-----cccccccccceeeecccc-cCCCCchhhheehhh------hhhc
Confidence 7889999999999999999999999988754 33344 89999999999 999997 88998883 4444
Q ss_pred Hhhcc--------------------CCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 340 INNAV--------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 340 i~~~~--------------------fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
++... +....|+++...+.++..+++.+...+.+
T Consensus 221 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~ 274 (371)
T PF00266_consen 221 LRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIE 274 (371)
T ss_dssp HHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccc
Confidence 42111 11224688999999999999887544443
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=183.80 Aligned_cols=242 Identities=16% Similarity=0.146 Sum_probs=166.5
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceeecCCcHHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTA 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~-~~~~~~~V~~~sGs~A~~~a~~a 187 (385)
.+..++|+.+++++...+...+ ++|.+..+...+...+....++++++++||++ ++ ..+.+.+++.|+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---~v~~~~g~t~a~~~~~~~ 80 (373)
T cd06453 6 AATSQKPQPVIDAIVDYYRHYN--ANVHRGVHELSARATDAYEAAREKVARFINAPSPD---EIIFTRNTTEAINLVAYG 80 (373)
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCC---eEEEeCCHHHHHHHHHHH
Confidence 5677889999999988876543 34443222222223334444778899999998 42 123445566799999999
Q ss_pred hcc---CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--
Q 016668 188 ILK---PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-- 262 (385)
Q Consensus 188 ll~---pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~-- 262 (385)
+.. |||+|++++++|.++..... ......|..+..++ ++ +++.+|++++++.+.+ ++++|++..+++
T Consensus 81 l~~~~~~g~~vl~~~~~~~~~~~~~~----~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~t 152 (373)
T cd06453 81 LGRANKPGDEIVTSVMEHHSNIVPWQ----QLAERTGAKLKVVP--VD-DDGQLDLEALEKLLTE-RTKLVAVTHVSNVL 152 (373)
T ss_pred hhhcCCCCCEEEECcchhHHHHHHHH----HHHhhcCcEEEEee--cC-CCCCcCHHHHHHHhcC-CceEEEEeCccccc
Confidence 877 99999999987655321100 12235576666665 44 4578999999999865 789998876654
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i 340 (385)
+...|+++|.++|+++|++|++|++|..|.. +.++. ++|++++|+||++.+++.|+++++++ +.+++
T Consensus 153 G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~------~~~~~ 221 (373)
T cd06453 153 GTINPVKEIGEIAHEAGVPVLVDGAQSAGHM-----PVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEE------LLEEM 221 (373)
T ss_pred CCcCCHHHHHHHHHHcCCEEEEEhhhhcCce-----eeeccccCCCEEEeccccccCCCCcEEEEEchH------HhhcC
Confidence 5678999999999999999999999976643 22232 78999999999997766698888874 44433
Q ss_pred hhccC--------------------CCccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 341 NNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 341 ~~~~f--------------------p~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
..... ....++|+...+.++..+++.+...++++
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~ 275 (373)
T cd06453 222 PPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEA 275 (373)
T ss_pred CCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 32110 01125677778888888888777655543
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=184.42 Aligned_cols=222 Identities=21% Similarity=0.233 Sum_probs=155.3
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~-~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
.+|.+++++...+.. +..+|+++++..|. +...++| +.+++++|.+. .+.++||+.|+..++.++++||
T Consensus 53 ~~~~v~~~~~~~~~~-~~~~~~~s~~~~G~~~~~~~le----~~ia~~~g~~~-----~ii~~~~~~a~~~~~~~l~~~g 122 (393)
T TIGR01822 53 SHPDLIQAAKDALDE-HGFGMSSVRFICGTQDIHKELE----AKIAAFLGTED-----TILYASCFDANGGLFETLLGAE 122 (393)
T ss_pred CCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHHHH----HHHHHHhCCCc-----EEEECchHHHHHHHHHHhCCCC
Confidence 488899998877654 44478888888885 3334444 57889999875 3567889999999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh---c--CCcEEEEcCCC--CCCC
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---F--RPKLIIAGASA--YPRD 265 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~---~--~pklIi~~~s~--~~~~ 265 (385)
|+|++.++.|.++.. .+...+.. .+.+ ..+|++++++.+++ . ++++|+++..+ +|..
T Consensus 123 d~vi~~~~~~~s~~~--------~~~~~~~~--~~~~------~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~ 186 (393)
T TIGR01822 123 DAIISDALNHASIID--------GVRLCKAK--RYRY------ANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVI 186 (393)
T ss_pred CEEEEeccccHHHHH--------HHHhcCCc--eEEe------CCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCc
Confidence 999999887654321 22333332 1221 24799999998864 2 56788876543 4567
Q ss_pred CCHHHHHHHHHHcCcEEEEecccccccccc-Ccc--c-CCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHH
Q 016668 266 FDYPRMRQIADAVGALLMMDMAHISGLVAA-SVV--A-DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 266 ~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~~--~-~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i 340 (385)
.|+++|+++|+++|++|++|++|..|.... +.. + ..+. ++|++++|+||+|.|+++|++++++ ++.+.+
T Consensus 187 ~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~------~~~~~l 260 (393)
T TIGR01822 187 APLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARK------EVVELL 260 (393)
T ss_pred CCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCH------HHHHHH
Confidence 899999999999999999999997775432 110 0 1112 5789999999999999999999887 576766
Q ss_pred hhccCCC-ccCCChHHHHHHHHHHHHHh
Q 016668 341 NNAVFPG-LQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 341 ~~~~fp~-~qg~p~~~~iaala~Al~e~ 367 (385)
.....+. ..+++....+++...+++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~a~~~al~~~ 288 (393)
T TIGR01822 261 RQRSRPYLFSNSLPPAVVGASIKVLEML 288 (393)
T ss_pred HHhCccceecCCCCHHHHHHHHHHHHHH
Confidence 5432222 22344555555666676544
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-20 Score=185.06 Aligned_cols=237 Identities=21% Similarity=0.267 Sum_probs=165.2
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCC-CCCCCcceeecCC-cHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLS-GSPANFEVY 185 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~-~~~~~~~~V~~~s-Gs~A~~~a~ 185 (385)
++..++++.|++++...+.+.+ +++.+ .+..+....+.+++ +++.+++++|+ +++ +|.+++ +|+++..++
T Consensus 26 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~r~~la~~~g~~~~~----~i~~~~~~t~~i~~~~ 98 (401)
T PRK10874 26 AATALKPQAVIEATQQFYSLSA--GNVHRSQFAAAQRLTARYEA-AREQVAQLLNAPDAK----NIVWTRGTTESINLVA 98 (401)
T ss_pred CcccCCCHHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHHH-HHHHHHHHcCCCCCC----EEEEECCHHHHHHHHH
Confidence 6677889999999988876543 44432 22223444445554 78899999999 443 344444 567989888
Q ss_pred HHh----ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 186 TAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 186 ~al----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
.++ ++|||+|++++++|.+... .+. ......|..+..++ ++ .++.+|++++++.+++ ++++|+++.++
T Consensus 99 ~~~~~~~~~~gd~vl~~~~~~~s~~~-~~~---~~~~~~g~~v~~v~--~~-~~~~~d~~~l~~~i~~-~t~lv~i~~~~ 170 (401)
T PRK10874 99 QSYARPRLQPGDEIIVSEAEHHANLV-PWL---MVAQQTGAKVVKLP--LG-ADRLPDVDLLPELITP-RTRILALGQMS 170 (401)
T ss_pred HHhhhccCCCcCEEEECCcchHHHHH-HHH---HHHHHhCCEEEEEe--cC-CCCcCCHHHHHHhcCc-CcEEEEEeCCc
Confidence 887 4899999999987654321 110 12245676666555 44 3568999999999965 78999887665
Q ss_pred C--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHH
Q 016668 262 Y--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 336 (385)
Q Consensus 262 ~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~ 336 (385)
+ |...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+|| +.||.| |+++.+++ +
T Consensus 171 n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K-~~gp~G~G~l~~~~~------~ 238 (401)
T PRK10874 171 NVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHF-----PADVQALDIDFYAFSGHK-LYGPTGIGVLYGKSE------L 238 (401)
T ss_pred ccccCcCCHHHHHHHHHHcCCEEEEECCcccccc-----cCCchhcCCCEEEEeccc-ccCCCccEEEEEchH------H
Confidence 4 5778999999999999999999999976643 22222 68999999999 457887 88888773 4
Q ss_pred HHHHhhcc--------------------CCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 337 ESAINNAV--------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 337 ~~~i~~~~--------------------fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
.+.+.... .....|+++...++|+..|++.+.+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~ 294 (401)
T PRK10874 239 LEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDI 294 (401)
T ss_pred HhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCH
Confidence 44332110 1123467888899999999987655444
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=183.33 Aligned_cols=233 Identities=17% Similarity=0.208 Sum_probs=160.6
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~a 187 (385)
++..++++.|++++...+.+.+ ++|+. .+..+.+.. ++.+.+++.+++++|++.+ ..+++.++|.|+..++.+
T Consensus 6 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~r~~la~~~g~~~~---~v~~t~~~t~a~~~~l~~ 79 (364)
T PLN02651 6 QATTPIDPRVLDAMLPFLIEHF--GNPHSRTHLYGWESE-DAVEKARAQVAALIGADPK---EIIFTSGATESNNLAIKG 79 (364)
T ss_pred cCCCCCCHHHHHHHHHHHHhCC--CCCChhhhHHHHHHH-HHHHHHHHHHHHHhCCCCC---eEEEeCCHHHHHHHHHHH
Confidence 5566889999999988776544 44543 111122333 3344478899999999864 234455667788777665
Q ss_pred h----ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC--
Q 016668 188 I----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (385)
Q Consensus 188 l----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-- 261 (385)
+ +++||+|++.+.+|.+... .+..+...|..+..++ ++ +++.+|++++++.+++ +++++++..++
T Consensus 80 ~~~~~~~~g~~vl~~~~~h~s~~~-----~~~~~~~~g~~v~~v~--~~-~~~~~d~~~l~~~i~~-~t~lv~v~~~~n~ 150 (364)
T PLN02651 80 VMHFYKDKKKHVITTQTEHKCVLD-----SCRHLQQEGFEVTYLP--VK-SDGLVDLDELAAAIRP-DTALVSVMAVNNE 150 (364)
T ss_pred HHHhccCCCCEEEEcccccHHHHH-----HHHHHHhcCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CcEEEEEECCCCC
Confidence 4 4789999998876644321 1112234465555555 44 3578999999999965 68888876554
Q ss_pred CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 262 ~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
++...|+++|.++|+++|+++++|++|+.|.+ +..++ ++|++++|.||+ .||.| |+++.+++. ..
T Consensus 151 tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~-----~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~------~~ 218 (364)
T PLN02651 151 IGVIQPVEEIGELCREKKVLFHTDAAQAVGKI-----PVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRP------RV 218 (364)
T ss_pred ceecccHHHHHHHHHHcCCEEEEEcchhhCCc-----ccCcccCCCCEEEechhhh-CCCCceEEEEEcCCC------CC
Confidence 45788999999999999999999999987743 22233 799999999996 68987 888888752 11
Q ss_pred HHhhcc------CCCccCCChHHHHHHHHHHHHHhh
Q 016668 339 AINNAV------FPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 339 ~i~~~~------fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
++.... .....|+++...+.++..|++.+.
T Consensus 219 ~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~ 254 (364)
T PLN02651 219 RLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAM 254 (364)
T ss_pred CCCccccCCCccCCccCCCccHHHHHHHHHHHHHHH
Confidence 111111 112357899999999999998665
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-20 Score=183.96 Aligned_cols=237 Identities=18% Similarity=0.226 Sum_probs=164.1
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceeecCCc-HHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSG-SPANFEVY 185 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~-~~~~~~~V~~~sG-s~A~~~a~ 185 (385)
++..++++.|++++...+...+. ++.. .+..+.+..+.+++ +++.+++++|+. ++ +|.+++| |+++..++
T Consensus 30 a~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~----~v~~t~g~t~~l~~~~ 102 (406)
T PRK09295 30 AASAQKPSQVIDAEAEFYRHGYA--AVHRGIHTLSAQATEKMEN-VRKQAALFINARSAE----ELVFVRGTTEGINLVA 102 (406)
T ss_pred cccccCCHHHHHHHHHHHHhcCC--CCCCcccHHHHHHHHHHHH-HHHHHHHHcCcCCCC----eEEEeCCHHHHHHHHH
Confidence 66778899999999887765442 2221 22224444455555 788999999984 43 3445554 56888887
Q ss_pred HH----hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 186 TA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 186 ~a----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
.+ +++|||+|++.+++|.+... .+. ......|..+..++ ++ .++.+|++++++.+++ ++++|++..++
T Consensus 103 ~~~~~~~~~~gd~vl~~~~~~~s~~~-~~~---~~~~~~g~~v~~v~--~~-~~~~~d~~~l~~~i~~-~t~lv~l~~~~ 174 (406)
T PRK09295 103 NSWGNSNVRAGDNIIISEMEHHANIV-PWQ---MLCARVGAELRVIP--LN-PDGTLQLETLPALFDE-RTRLLAITHVS 174 (406)
T ss_pred HHhhhhcCCCcCEEEECcchhhHHHH-HHH---HHHHHcCcEEEEEe--cC-CCCCCCHHHHHHhcCC-CcEEEEEecch
Confidence 76 46899999999987644221 110 12234566555555 44 3577999999999865 78999887665
Q ss_pred C--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHH
Q 016668 262 Y--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 336 (385)
Q Consensus 262 ~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~ 336 (385)
+ |...|+++|.++|+++|+++++|++|+.|.. +-++. ++|++++|+|| +.||.| |+++.+++ +
T Consensus 175 n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~-----~~~~~~~~~D~~~~s~~K-~~gp~G~G~l~~~~~------~ 242 (406)
T PRK09295 175 NVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHH-----PVDVQALDCDFYVFSGHK-LYGPTGIGILYVKEA------L 242 (406)
T ss_pred hcccccCCHHHHHHHHHHcCCEEEEEcccccCcc-----ccCchhcCCCEEEeehhh-ccCCCCcEEEEEchH------h
Confidence 4 5788999999999999999999999977643 22333 78999999999 568887 88888874 3
Q ss_pred HHHHhhc---------------------cCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 337 ESAINNA---------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 337 ~~~i~~~---------------------~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
.+.+... .+....|+++...++++..|++.+.+.+.
T Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~ 299 (406)
T PRK09295 243 LQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGL 299 (406)
T ss_pred HhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCH
Confidence 3322100 01123568899999999999987765444
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=183.18 Aligned_cols=234 Identities=17% Similarity=0.173 Sum_probs=166.2
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+.+.+++..+++.|++++...+.++. + +...++.+.++++++++||++.++ +.+.+++|+.++..+
T Consensus 11 ~l~~pGP~~~~~~V~~a~~~~~~~~~-----------~-~~~~~~~~~~~~~l~~~~g~~~~~--~vi~~~~gt~a~~~a 76 (401)
T PLN02409 11 HLFVPGPVNIPERVLRAMNRPNEDHR-----------S-PAFPALTKELLEDVKYIFKTKSGT--PFIFPTTGTGAWESA 76 (401)
T ss_pred eeccCCCCCCCHHHHHHhcCCCCCCC-----------C-HHHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCcHHHHHHH
Confidence 44668889999999999875432211 1 223355666889999999997532 456677888899999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh---cCCcEEEEcCCC
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASA 261 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~---~~pklIi~~~s~ 261 (385)
+..+++|||+|++.++ +|++..|. ..+...|..+..++ .+. +..+|++++++.+++ .++|+|++..+.
T Consensus 77 ~~~~~~~Gd~Vlv~~~---~~~~~~~~---~~~~~~g~~v~~v~--~~~-~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~ 147 (401)
T PLN02409 77 LTNTLSPGDKVVSFRI---GQFSLLWI---DQMQRLNFDVDVVE--SPW-GQGADLDILKSKLRQDTNHKIKAVCVVHNE 147 (401)
T ss_pred HHhcCCCCCEEEEeCC---CchhHHHH---HHHHHcCCceEEEE--CCC-CCCCCHHHHHHHHhhCcCCCccEEEEEeec
Confidence 9999999999999986 34333221 12345576666665 332 235899999999875 368988876543
Q ss_pred --CCCCCCHHHHHHH--HHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchh
Q 016668 262 --YPRDFDYPRMRQI--ADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV 334 (385)
Q Consensus 262 --~~~~~dl~~I~~i--a~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~ 334 (385)
+|...|+++|.++ |+++|+++++|++|+.|.. +-.++ ++|++++|.||||.||.| |+++.++
T Consensus 148 ~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~-----~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~------ 216 (401)
T PLN02409 148 TSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGAL-----DFRMDEWGVDVALTGSQKALSLPTGLGIVCASP------ 216 (401)
T ss_pred ccccccCCHHHHHHHHhhhccCcEEEEEcccccCCc-----cccccccCccEEEEcCccccCcCCCcceeEECH------
Confidence 5678899999999 9999999999999876532 32333 789999999999999876 8888877
Q ss_pred HHHHHHhhcc----C-----------CC-c-cCCChHHHHHHHHHHHHHhhCchH
Q 016668 335 ELESAINNAV----F-----------PG-L-QGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 335 ~~~~~i~~~~----f-----------p~-~-qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.+++.... + .+ . .++|+.+.+.++..|++.+...+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~ 271 (401)
T PLN02409 217 KALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGL 271 (401)
T ss_pred HHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhH
Confidence 3444443210 0 01 1 346788889999999998765544
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=181.64 Aligned_cols=238 Identities=19% Similarity=0.211 Sum_probs=162.8
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceee-cCCcHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQ-PLSGSPANFEVY 185 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~-~~~~~~~V~-~~sGs~A~~~a~ 185 (385)
++..++|+.|++++...+...+ +++.. .+..+.+..+.++ .+++.+++++|++ .+ +|. +.++|.++..++
T Consensus 23 a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~~----~i~~t~g~t~~l~~~~ 95 (398)
T TIGR03392 23 AATALKPQAVIDATQQFYRLSS--GTVHRSQHQQAQSLTARYE-LARQQVARFLNAPDAE----NIVWTRGTTESINLVA 95 (398)
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHH-HHHHHHHHHhCCCCCC----eEEEeCChHHHHHHHH
Confidence 5666789999999988775433 34432 2222333333444 4788999999995 43 344 445567999888
Q ss_pred HHh----ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 186 TAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 186 ~al----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
.++ ++|||+|++.+++|.+... .+. ..+...|..+..++ ++ .++.+|++++++.+++ ++++|++..++
T Consensus 96 ~~~~~~~~~~gd~Vl~~~~~~~s~~~-~~~---~~~~~~g~~v~~v~--~~-~~~~~~~~~l~~~i~~-~t~lv~i~~~~ 167 (398)
T TIGR03392 96 QSYARPRLQPGDEIIVSEAEHHANLI-PWL---MVAQQTGAKVVKLP--IG-ADLLPDIRQLPELLTP-RTRILALGQMS 167 (398)
T ss_pred HHhhhccCCCCCEEEECCcchhHHHH-HHH---HHHHHcCcEEEEEe--cC-CCCCcCHHHHHHHhcc-CceEEEEECcc
Confidence 887 5899999999987654321 110 12245676555555 44 2467999999999865 78999887665
Q ss_pred C--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHH
Q 016668 262 Y--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 336 (385)
Q Consensus 262 ~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~ 336 (385)
+ |...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||. .||.| |+++.++ ++
T Consensus 168 n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~-----~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~------~~ 235 (398)
T TIGR03392 168 NVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHG-----PPDVQALDIDFYAFSGHKL-YGPTGIGVLYGKT------EL 235 (398)
T ss_pred ccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCC-----CCChhhcCCCEEEEecccc-cCCCceEEEEEcH------HH
Confidence 4 5678999999999999999999999976543 21222 689999999995 57876 8888876 34
Q ss_pred HHHHhhcc--------------------CCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 337 ESAINNAV--------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 337 ~~~i~~~~--------------------fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
.+++.... .....|+++...++++..|++.+.+.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~ 292 (398)
T TIGR03392 236 LEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIA 292 (398)
T ss_pred HhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 44432110 11124678888999999999876554443
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=180.51 Aligned_cols=239 Identities=19% Similarity=0.226 Sum_probs=162.0
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCC-cHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYT 186 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r-~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~s-Gs~A~~~a~~ 186 (385)
++..++|+.|.+++...+...+ +++... ++.+....+.++ .+++.+++++|++..+ +|.+++ +++++..++.
T Consensus 25 ~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~ia~~~~~~~~~---~v~~~~g~t~~l~~~~~ 98 (403)
T TIGR01979 25 AATSQKPQQVIDAVAEYYRNSN--ANVHRGIHTLSVRATEAYE-AVREKVAKFINAASDE---EIVFTRGTTESINLVAY 98 (403)
T ss_pred ccccCCCHHHHHHHHHHHHhCC--CCCCCCccHHHHHHHHHHH-HHHHHHHHHhCcCCCC---eEEEeCCHHHHHHHHHH
Confidence 5666789999999987766544 333221 122223333444 4678899999998311 344444 5568887777
Q ss_pred Hh----ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 016668 187 AI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (385)
Q Consensus 187 al----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 262 (385)
++ +++||+|++++++|.++... + .......|..+..++ ++ +++.+|++++++.+.+ ++++|++..+++
T Consensus 99 ~~~~~~~~~g~~vl~~~~~~~s~~~~-~---~~~~~~~g~~~~~v~--~~-~~~~~~~~~l~~~i~~-~~~lv~~~~~~~ 170 (403)
T TIGR01979 99 SWGDSNLKAGDEIVISEMEHHANIVP-W---QLLAERTGATLKFIP--LD-DDGTLDLDDLEKLLTE-KTKLVAITHVSN 170 (403)
T ss_pred HhhhhcCCCCCEEEECcchhhHHHHH-H---HHHHHhcCcEEEEEe--cC-CCCCCCHHHHHHHhcc-CCeEEEEEcccc
Confidence 64 68999999999877553221 1 012235676655555 44 4578999999999865 799988876554
Q ss_pred --CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 263 --PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 263 --~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
|...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||++ ||.| |+++.+++ +.
T Consensus 171 ~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-gp~G~g~l~~~~~------~~ 238 (403)
T TIGR01979 171 VLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHM-----PVDVQALDCDFYVFSGHKMY-GPTGIGVLYGKEE------LL 238 (403)
T ss_pred cccccCCHHHHHHHHHHcCCEEEEEchhhcCcc-----ccCccccCCCEEEEeccccc-CCCCceEEEEchH------HH
Confidence 5788999999999999999999999977643 11222 7899999999965 7887 88888763 43
Q ss_pred HHHhhcc--------------------CCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 338 SAINNAV--------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 338 ~~i~~~~--------------------fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
+.+.... +....|+++...++++..+++.+.+.+++
T Consensus 239 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~ 294 (403)
T TIGR01979 239 EQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLE 294 (403)
T ss_pred hcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHH
Confidence 4332100 01124678888899999999876554443
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=179.19 Aligned_cols=235 Identities=20% Similarity=0.246 Sum_probs=159.7
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCC-cHHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYTA 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~s-Gs~A~~~a~~a 187 (385)
++...+|+.+++++...+.... ..++..|. ......++.+.+++.+++++|++++ +|.+++ ++.++..++.+
T Consensus 24 ~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~l~~~ia~~~~~~~~----~v~~~~~~t~~l~~~~~~ 96 (397)
T TIGR01976 24 PAGTQIPQSVADAVSAALTRSN--ANRGGAYE-SSRRADQVVDDAREAVADLLNADPP----EVVFGANATSLTFLLSRA 96 (397)
T ss_pred CccCCCCHHHHHHHHHHHHhcC--CCCCCCch-HHHHHHHHHHHHHHHHHHHcCCCCC----eEEEeCCHHHHHHHHHHH
Confidence 6677789999999988775432 12222121 1122223444567889999999864 344444 45677666655
Q ss_pred h---ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--
Q 016668 188 I---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-- 262 (385)
Q Consensus 188 l---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~-- 262 (385)
+ ++|||+|++.+++|.++.. .+. ..+...|..+..++ ++++++.+|++++++.+++ ++++|+++.+++
T Consensus 97 ~~~~~~~gd~vl~~~~~~~s~~~-~~~---~~~~~~g~~~~~~~--~~~~~~~~~~~~l~~~i~~-~~~lv~i~~~~n~t 169 (397)
T TIGR01976 97 ISRRWGPGDEVIVTRLDHEANIS-PWL---QAAERAGAKVKWAR--VDEATGELHPDDLASLLSP-RTRLVAVTAASNTL 169 (397)
T ss_pred HHhcCCCCCEEEEcCCchHhHHH-HHH---HHHHhcCCEEEEEe--ccccCCCcCHHHHHHhcCC-CceEEEEeCCCCCC
Confidence 4 7899999999886654321 110 12345676655554 5544578999999999864 688888876654
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i 340 (385)
|...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||++ ||+.|++++++ ++.+.+
T Consensus 170 G~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~~G~l~~~~------~~~~~l 237 (397)
T TIGR01976 170 GSIVDLAAITELVHAAGALVVVDAVHYAPHG-----LIDVQATGADFLTCSAYKFF-GPHMGILWGRP------ELLMNL 237 (397)
T ss_pred CccCCHHHHHHHHHHcCCEEEEehhhhcccc-----CCCHHHcCCCEEEEechhhc-CCceEEEEEcH------HHHhhC
Confidence 5678999999999999999999999965522 21222 7899999999987 78899999887 454444
Q ss_pred hhccC---------CCccCCChHHHHHHHHHHHHHhhC
Q 016668 341 NNAVF---------PGLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 341 ~~~~f---------p~~qg~p~~~~iaala~Al~e~~~ 369 (385)
..... ....|+++...++++..|++.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 275 (397)
T TIGR01976 238 PPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAG 275 (397)
T ss_pred CCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHH
Confidence 32111 112467888899999999987654
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=176.27 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=153.6
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pG 192 (385)
....-++++.+.+.+.+.. ..+.++++|+ .+++++|+++ .|.+.|||.|+..++.+| ++||
T Consensus 13 i~~~e~~~v~~vl~sg~i~---------~G~~v~~FE~----~~ae~~G~k~-----ava~~sgT~AL~laL~al~ig~G 74 (374)
T COG0399 13 IGEEELAAVQEVLKSGWLT---------GGPFVRRFEQ----AFAEYLGVKY-----AVAVSSGTAALHLALLALAIGPG 74 (374)
T ss_pred cchHHHHHHHHHHHcCCee---------cChHHHHHHH----HHHHHhCCCe-----EEEecChHHHHHHHHHhcCCCCC
Confidence 4566677777776554321 1255677876 5899999998 367899999999999977 8999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHH
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR 272 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~ 272 (385)
|+|++++.++-+.. ..+...|. +++..++|++++.+|++.||+.+++ ++|.|+.- ..+|...|+++|.
T Consensus 75 DeVI~ps~TfvATa--------n~i~~~Ga--~PVFvDid~~T~nid~~~ie~aIt~-~tKAIipV-hl~G~~~dm~~i~ 142 (374)
T COG0399 75 DEVIVPSFTFVATA--------NAVLLVGA--KPVFVDIDPDTLNIDPDLIEAAITP-RTKAIIPV-HLAGQPCDMDAIM 142 (374)
T ss_pred CEEEecCCchHHHH--------HHHHHcCC--eEEEEecCCcccCCCHHHHHHHccc-CCeEEEEe-hhccCCCCHHHHH
Confidence 99999987543221 24556776 5666778888999999999999976 69988752 4578888999999
Q ss_pred HHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCC--ccCccccEEEEEEeCCCCchhHHHHHHhhccCCCc
Q 016668 273 QIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL 348 (385)
Q Consensus 273 ~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~ 348 (385)
+||++||++||.|+||+.|....|.. +. ..|+.++||| |.++.-.||+|+++++ ++.+++....+.|.
T Consensus 143 ~la~~~~l~vIEDaAqa~Ga~y~gk~---vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~-----ela~k~~~lr~hG~ 213 (374)
T COG0399 143 ALAKRHGLPVIEDAAQAHGATYKGKK---VGSFGDIGAFSFHATKNLTTGEGGAVVTNDE-----ELAEKARSLRNHGL 213 (374)
T ss_pred HHHHHcCCeEEEEcchhccCeecCcc---cccccceEEEEecCCCCccccCceEEEeCCH-----HHHHHHHHHHHhCc
Confidence 99999999999999999998876642 22 5688888888 8896559999999998 88888765555554
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-19 Score=176.81 Aligned_cols=242 Identities=18% Similarity=0.222 Sum_probs=156.4
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeec-CCcHHHHHHHHHHhcc
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPANFEVYTAILK 190 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~-~sGs~A~~~a~~all~ 190 (385)
++|+.|++++.+.+.... +.++. .|..+.... ...+.+++++++++|++..+ +|.+ .+++.++..++.++++
T Consensus 11 ~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~---~v~~~~g~t~al~~~~~~~~~ 84 (376)
T TIGR01977 11 PKPDEVYEAMADFYKNYG--GSPGRGRYRLALRAS-REVEETRQLLAKLFNAPSSA---HVVFTNNATTALNIALKGLLK 84 (376)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCCcccchHHHHHH-HHHHHHHHHHHHHhCcCCCC---eEEEeCCHHHHHHHHHHhccC
Confidence 467899999887765422 11221 111111112 23334677899999987531 3444 4667799999999999
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CCCCCH
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDY 268 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~~~~dl 268 (385)
+||+|++.+++|+++.. .+ .......|..+..++ .+ .++.+|++++++.+++ ++++|++..+++ |...|+
T Consensus 85 ~gd~vl~~~~~~~~~~~-~~---~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~ 156 (376)
T TIGR01977 85 EGDHVITTPMEHNSVAR-PL---ECLKEQIGVEITIVK--CD-NEGLISPERIKRAIKT-NTKLIVVSHASNVTGTILPI 156 (376)
T ss_pred CCCEEEECcchhhHHHH-HH---HHHHHHcCcEEEEEe--cC-CCCCcCHHHHHHhcCC-CCeEEEEECCCCCccccCCH
Confidence 99999998876654321 00 001223365555444 44 3568999999999865 789988876654 578899
Q ss_pred HHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCC-C-chh----HHHH-
Q 016668 269 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDP-V-LGV----ELES- 338 (385)
Q Consensus 269 ~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~-~-~~~----~~~~- 338 (385)
++|.++|+++|+++++|++|+.|... ..+. ++|++++|+||++.||.| |+++.+++. + ... ....
T Consensus 157 ~~i~~l~~~~~~~livD~a~~~g~~~-----~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~ 231 (376)
T TIGR01977 157 EEIGELAQENGIFFILDAAQTAGVIP-----IDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSA 231 (376)
T ss_pred HHHHHHHHHcCCEEEEEhhhccCccC-----CCchhcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccc
Confidence 99999999999999999999887542 1222 799999999999999987 666655542 0 000 0000
Q ss_pred HHh--hc-cCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 339 AIN--NA-VFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 339 ~i~--~~-~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
..+ .. ......|+++...++++..+++.+...+..
T Consensus 232 ~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~ 269 (376)
T TIGR01977 232 LIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIA 269 (376)
T ss_pred cccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 000 00 000123578888899999999888766543
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=180.04 Aligned_cols=238 Identities=18% Similarity=0.170 Sum_probs=162.3
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecC-CcHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYT 186 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~-sGs~A~~~a~~ 186 (385)
++..++++.|++++...+...+. ++.. .++.+.+..+.++ .+++.+++++|++.. .+|.++ ++|.++..++.
T Consensus 39 a~~~~~p~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~r~~la~~~~~~~~---~~v~~t~g~t~al~~i~~ 112 (424)
T PLN02855 39 AATSQKPAAVLDALQDYYEEYNS--NVHRGIHALSAKATDAYE-LARKKVAAFINASTS---REIVFTRNATEAINLVAY 112 (424)
T ss_pred ccccCCCHHHHHHHHHHHHhcCC--CCCCccchHHHHHHHHHH-HHHHHHHHHcCCCCC---CEEEEeCCHHHHHHHHHH
Confidence 56667899999999877754432 3321 2232333344444 468899999999631 134444 45668888876
Q ss_pred H----hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 016668 187 A----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (385)
Q Consensus 187 a----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 262 (385)
+ .++|||+|++.+++|.+... .+. ......|..+..++ +++ ++.+|++++++.+++ ++|+|++..+++
T Consensus 113 ~~~~~~~~~gd~vl~~~~~~~s~~~-~~~---~~a~~~g~~v~~v~--~~~-~~~~~~~~l~~~i~~-~t~lv~i~~~~n 184 (424)
T PLN02855 113 TWGLANLKPGDEVILSVAEHHSNIV-PWQ---LVAQKTGAVLKFVG--LTP-DEVLDVEQLKELLSE-KTKLVATHHVSN 184 (424)
T ss_pred HhhhhcCCCcCEEEECCCccHHHHH-HHH---HHHHHcCCEEEEEe--cCC-CCCcCHHHHHHHhcc-CceEEEEeCccc
Confidence 5 36899999999987754321 110 11234566555555 443 356999999999965 789998876654
Q ss_pred --CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 263 --PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 263 --~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
|...|+++|.++|+++|+++++|++|+.|.. +-.+. ++|++++|+|| +.||.| |+++.+++ +.
T Consensus 185 ~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K-~~gp~G~G~l~~~~~------~~ 252 (424)
T PLN02855 185 VLGSILPVEDIVHWAHAVGAKVLVDACQSVPHM-----PVDVQTLGADFLVASSHK-MCGPTGIGFLWGKSD------LL 252 (424)
T ss_pred cccccCCHHHHHHHHHHcCCEEEEEhhhhcCCc-----CCCchhcCCCEEEeeccc-ccCCCccEEEEEchh------hh
Confidence 5788999999999999999999999976643 22233 68999999999 678887 88888874 33
Q ss_pred HHHhhc--------------------cCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 338 SAINNA--------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 338 ~~i~~~--------------------~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+++... ......|+++...+++++.+++.+...+.
T Consensus 253 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~ 307 (424)
T PLN02855 253 ESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGM 307 (424)
T ss_pred hcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCH
Confidence 333211 00013567899999999999986655443
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=175.01 Aligned_cols=223 Identities=21% Similarity=0.188 Sum_probs=152.0
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCE
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDR 194 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~ 194 (385)
+|+|++++...+.+ |.+++.+.+.+.|.. ...+..++++++++|++. .+.+++|+.++.+++.++++|||+
T Consensus 17 ~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~---~~~~~l~~~la~~~~~~~-----~iv~~sg~~a~~~~~~~~~~~gd~ 87 (349)
T cd06454 17 HPEVIEAAKEALDK-YGVGAGGSRLISGTS---DLHEELEEELAEFHGKEA-----ALVFSSGYAANDGVLSTLAGKGDL 87 (349)
T ss_pred CHHHHHHHHHHHHH-hCCCCCCcCeecCCc---hHHHHHHHHHHHHhCCCC-----EEEeccHHHHHHHHHHHhcCCCCE
Confidence 68999999988864 444433333343422 233334567889999864 466789999999888999999999
Q ss_pred EeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh----cCCcEEEEcCCCC--CCCCCH
Q 016668 195 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL----FRPKLIIAGASAY--PRDFDY 268 (385)
Q Consensus 195 Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~----~~pklIi~~~s~~--~~~~dl 268 (385)
|++.++.|.+... .+...|..+..++ .+|++++++++++ .++++|+++.+++ +...|+
T Consensus 88 Vl~~~~~~~~~~~--------~~~~~g~~~~~~~--------~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~ 151 (349)
T cd06454 88 IISDSLNHASIID--------GIRLSGAKKRIFK--------HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPL 151 (349)
T ss_pred EEEehhhhHHHHH--------HHHHcCCceEEec--------CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCH
Confidence 9998876644321 2334565443322 3588899988865 3567888766543 567899
Q ss_pred HHHHHHHHHcCcEEEEecccccccccc-Ccc--cCC--CCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 269 PRMRQIADAVGALLMMDMAHISGLVAA-SVV--ADP--FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 269 ~~I~~ia~~~ga~livD~ah~~Gli~~-g~~--~~p--~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
++|.++|+++|+++++|++|..|.... +.. ..+ ..+.|++++|+||++. ++||+++.++ ++.+.+...
T Consensus 152 ~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~gG~i~~~~------~~~~~~~~~ 224 (349)
T cd06454 152 PELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFG-AVGGYIAGSK------ELIDYLRSY 224 (349)
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhc-ccCCEEECCH------HHHHHHHHh
Confidence 999999999999999999997665421 110 011 1267899999999875 5788888876 566666544
Q ss_pred cCCCc-cCCChHHHHHHHHHHHHHhhC
Q 016668 344 VFPGL-QGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 344 ~fp~~-qg~p~~~~iaala~Al~e~~~ 369 (385)
..+.. .++++...++++..+++.+..
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~l~~~~~ 251 (349)
T cd06454 225 ARGFIFSTSLPPAVAAAALAALEVLQG 251 (349)
T ss_pred chhhhccCCCCHHHHHHHHHHHHHHhc
Confidence 33322 234566677787888876643
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=177.42 Aligned_cols=198 Identities=13% Similarity=0.097 Sum_probs=138.6
Q ss_pred ccCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHH
Q 016668 108 IASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (385)
Q Consensus 108 iasen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~ 186 (385)
|---.++++.+++++...... + +.|.. .+..+......+ +.+++.+++++|++. + +.+++|+.|+.+++.
T Consensus 26 ~~~~~p~~~~~~~a~~~~~~~-~--~~~~~~~~~~~~~~~~~~-~~l~~~lA~~~g~~~----~-~~~~g~t~a~~~al~ 96 (387)
T PRK09331 26 IQRGGILTPEARKALIEYGDG-Y--SVCDYCPGRLDQIKKPPI-ADFHEDLAEFLGMDE----A-RVTHGAREGKFAVMH 96 (387)
T ss_pred hhcCCCCCHHHHHHHHHHHhc-c--CCCcccccccccccChHH-HHHHHHHHHHhCCCc----E-EEeCCHHHHHHHHHH
Confidence 344567789999999877632 2 23221 112221111122 235667999999976 2 446677889999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc------CCcEEEEcCC
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RPKLIIAGAS 260 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~------~pklIi~~~s 260 (385)
+++++||+|++..+. |.+.. ..+...|..+..++.+.+ +++.+|++++++.++.. ++++|++..+
T Consensus 97 ~l~~~gd~Vlv~~~~---h~s~~-----~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~ 167 (387)
T PRK09331 97 SLCKKGDYVVLDGLA---HYTSY-----VAAERAGLNVREVPKTGY-PEYKITPEAYAEKIEEVKEETGKPPALALLTHV 167 (387)
T ss_pred HhcCCCCEEEECCCc---hHHHH-----HHHHHcCCEEEEEeCccC-cCCCcCHHHHHHHHHHhhhccCCCCEEEEEECC
Confidence 999999999998764 33321 134556766555553213 35689999999988642 5888888765
Q ss_pred C--CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccc-cEEEEEEeC
Q 016668 261 A--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGP-RGGMIFFKK 328 (385)
Q Consensus 261 ~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gp-rgG~I~~~~ 328 (385)
+ ++...|+++|.++|+++|+++++|++|+.|.. +.+.. ++|++++|+||++.+| ++|++++++
T Consensus 168 ~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~-----~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~ 235 (387)
T PRK09331 168 DGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRM-----PVDGKKLGADFIVGSGHKSMAASAPSGVLATTE 235 (387)
T ss_pred CCCCcccccHHHHHHHHHHcCCEEEEECCcccCCc-----CCCHHHcCCCEEEeeCcccccCCCCEEEEEECH
Confidence 4 45778999999999999999999999987643 22222 7899999999999765 568998887
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=173.58 Aligned_cols=231 Identities=17% Similarity=0.123 Sum_probs=165.7
Q ss_pred hhhcccCChHHHHHHHHHHHHhh-hc-cccccCCCCCcHHHHHHHhhHhhccC-CCCCCCCCCCCCcHHHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQF-KS-LELIASENFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKR 156 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~-~~-l~Liasen~~s~~V~~al~s~l~~~y-~~g~p~~r~~~G~~~~~~le~~~~~~ 156 (385)
+.++....|+++..+.+...+.. .. |----++..+|+.|.+++.......- .+++++ | |.+ ++.+..++.
T Consensus 9 ~~~l~~~~~~vw~e~~~la~e~~~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~---~-G~p---~L~~aL~k~ 81 (420)
T KOG0257|consen 9 NRNLSTSKPYVWTEINRLAAEHKVPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRG---Y-GLP---QLRKALAKA 81 (420)
T ss_pred cccccccCCcHHHHHHHHHHhcCCCCcccCCCCCCCCcHHHHHHHHHHhccchhcccccc---C-Cch---HHHHHHHHH
Confidence 46678888899987777555443 11 11124577788999999886654431 122222 3 444 677777788
Q ss_pred HHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecc-----
Q 016668 157 ALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR----- 230 (385)
Q Consensus 157 la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~----- 230 (385)
+++++|.... ...+|..++|. +|+..++++++++||+|++.+|-+.++.. .+.++|....+++..
T Consensus 82 ~se~~~~~~~-~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~--------~~~maG~tpv~v~~~~~~g~ 152 (420)
T KOG0257|consen 82 YSEFYGGLLD-PDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIP--------QVVMAGGTPVFVPLKPKEGN 152 (420)
T ss_pred HHHHhccccC-CcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhh--------HHhhcCCcceeecccccccc
Confidence 8998887542 22467778876 59999999999999999999997765532 356777766666643
Q ss_pred ccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-----CCCHHHHHHHHHHcCcEEEEeccccccccccCc-ccCC--C
Q 016668 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--F 302 (385)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~-----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p--~ 302 (385)
....++.+|.+++|..+.+ |+|+|+++.|+||. ...+++|++||++||.++|+|+++ --+++.+. ++.. +
T Consensus 153 ~~s~~~~~D~~~le~~~t~-kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevY-e~~v~d~~~h~r~asl 230 (420)
T KOG0257|consen 153 VSSSDWTLDPEELESKITE-KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVY-EWLVYDGNKHIRIASL 230 (420)
T ss_pred ccCccccCChHHHHhhccC-CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHh-HHHhhCCCcceeeecC
Confidence 1134678999999999976 89999999999883 235999999999999999999995 45565553 3221 1
Q ss_pred CCC---cEEEECCCccC--ccccEEEEEEeC
Q 016668 303 KYC---DVVTTTTHKSL--RGPRGGMIFFKK 328 (385)
Q Consensus 303 ~ga---Div~~S~hK~l--~GprgG~I~~~~ 328 (385)
.|. -+.++|+.|+| .|||-||+++++
T Consensus 231 Pgm~ertitvgS~gKtf~~TGWrlGW~igp~ 261 (420)
T KOG0257|consen 231 PGMYERTITVGSFGKTFGVTGWRLGWAIGPK 261 (420)
T ss_pred CchhheEEEeccccceeeeeeeeeeeeechH
Confidence 232 26789999997 899999999955
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=177.40 Aligned_cols=235 Identities=19% Similarity=0.236 Sum_probs=161.2
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
++..++++.|++++...+.+. .++|+..+..+....+.++ .+++++++++|++.+ ..+++.+||.|+..++.++
T Consensus 6 aa~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~---~i~~t~~~t~a~~~al~~~ 79 (379)
T TIGR03402 6 NATTRVDPEVLEAMLPYFTEY--FGNPSSMHSFGGEVGKAVE-EAREQVAKLLGAEPD---EIIFTSGGTESDNTAIKSA 79 (379)
T ss_pred cCCCCCCHHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHH-HHHHHHHHHhCCCCC---eEEEeCcHHHHHHHHHHHH
Confidence 566788999999998887643 3666643322333344444 478899999999864 1344556778999888876
Q ss_pred c---cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--C
Q 016668 189 L---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--P 263 (385)
Q Consensus 189 l---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~ 263 (385)
+ .+||+|++.+.+|.+.... +..+...|..+..++ ++ +++.+|++++++.+++ +++++++..+++ |
T Consensus 80 ~~~~~~~~~vv~~~~~~~s~~~~-----~~~~~~~G~~v~~v~--~~-~~g~~~~~~l~~~i~~-~~~lv~i~~~~n~tG 150 (379)
T TIGR03402 80 LAAQPEKRHIITTAVEHPAVLSL-----CQHLEKQGYKVTYLP--VD-EEGRLDLEELRAAITD-DTALVSVMWANNETG 150 (379)
T ss_pred HHhcCCCCeEEEcccccHHHHHH-----HHHHHHcCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CcEEEEEEcccCCee
Confidence 4 4678999888766543221 112233566555555 44 3578999999999965 788887765544 5
Q ss_pred CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHH
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i 340 (385)
...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+|| +.||.| |+++.+++.. +...+
T Consensus 151 ~~~~~~~I~~l~~~~g~~vivD~~~~~g~~-----~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~----~~p~~ 220 (379)
T TIGR03402 151 TIFPIEEIGEIAKERGALFHTDAVQAVGKI-----PIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGTR----FRPLL 220 (379)
T ss_pred ecccHHHHHHHHHHcCCEEEEECccccccc-----ccCcccCCCCEEEEcHHH-cCCCCceEEEEECCCCC----CCCcc
Confidence 788999999999999999999999987643 22333 79999999999 778987 8888876521 11111
Q ss_pred h--hccCCCccCCChHHHHHHHHHHHHHhh
Q 016668 341 N--NAVFPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 341 ~--~~~fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
. ........|+++...+.++..|++.+.
T Consensus 221 ~g~~~~~~~~~gt~~~~~~~~l~~al~~~~ 250 (379)
T TIGR03402 221 RGGHQERGRRAGTENVPGIVGLGKAAELAT 250 (379)
T ss_pred cCCccCCCcCCCCccHHHHHHHHHHHHHHH
Confidence 0 000011246788899999999997653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-19 Score=173.46 Aligned_cols=234 Identities=20% Similarity=0.256 Sum_probs=159.2
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCC-CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYT 186 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~-~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~ 186 (385)
++..++++.|++++...+.+.+ ++|+.+.+ .+....+.++ .+++++++++|++.+ +|.+++| +.|+..++.
T Consensus 5 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~la~~~g~~~~----~v~~~~g~t~a~~~~l~ 77 (353)
T TIGR03235 5 NATTPIDPAVAEAMLPWLLEEF--GNPSSRTHEFGHNAKKAVE-RARKQVAEALGADTE----EVIFTSGATESNNLAIL 77 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHH-HHHHHHHHHhCCCCC----eEEEeCCHHHHHHHHHH
Confidence 4566889999999988875543 45654322 1333333344 478899999999864 3445555 569998888
Q ss_pred Hhc----cCC-CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 187 AIL----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 187 all----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
++. ++| |+|++...+|+++... +..+...|..+..++ ++ +++.+|++++++.+++ ++++|++..++
T Consensus 78 ~l~~~~~~~g~~~vi~~~~~~~s~~~~-----~~~~~~~G~~v~~v~--~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~ 148 (353)
T TIGR03235 78 GLARAGEQKGKKHIITSAIEHPAVLEP-----IRALERNGFTVTYLP--VD-ESGRIDVDELADAIRP-DTLLVSIMHVN 148 (353)
T ss_pred HHHHhcccCCCCeeeEcccccHHHHHH-----HHHHHhcCCEEEEEc--cC-CCCcCCHHHHHHhCCC-CCEEEEEEccc
Confidence 875 366 7888887766543221 112233466555544 44 3578999999999864 68898877655
Q ss_pred C--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHH
Q 016668 262 Y--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 336 (385)
Q Consensus 262 ~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~ 336 (385)
+ |...|+++|.++|+++|+++++|++|+.|.. +..++ ++|++++|+||+ .||.| |+++.+++.. .
T Consensus 149 n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~D~~~~s~~K~-~gp~g~g~l~~~~~~~----~ 218 (353)
T TIGR03235 149 NETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI-----TVDLSADRIDLISCSGHKI-YGPKGIGALVIRKRGK----P 218 (353)
T ss_pred CCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc-----cccccccCCCEEEeehhhc-CCCCceEEEEEccCcc----c
Confidence 4 5678999999999999999999999987754 22233 799999999998 58886 8888887521 0
Q ss_pred HHHHhhccC------CCccCCChHHHHHHHHHHHHHhh
Q 016668 337 ESAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 337 ~~~i~~~~f------p~~qg~p~~~~iaala~Al~e~~ 368 (385)
...+....+ ....|+++...++++..|++.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~ 256 (353)
T TIGR03235 219 KAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIAR 256 (353)
T ss_pred ccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHH
Confidence 001111111 11246788899999999998764
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=174.34 Aligned_cols=223 Identities=21% Similarity=0.203 Sum_probs=153.1
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD 193 (385)
+++.+.+++...+.. +..++++.++..|.. ++.+..++++++++|.+. +|.+++|++++..++.++++|||
T Consensus 57 ~~~~i~~a~~~~~~~-~~~~~~~~~~~~G~~---~l~~~l~~~la~~~g~~~-----~i~~tsG~~a~~~~~~~l~~~gd 127 (397)
T PRK06939 57 NHPELIAAAKAALDS-HGFGMASVRFICGTQ---DLHKELEEKLAKFLGTED-----AILYSSCFDANGGLFETLLGKED 127 (397)
T ss_pred CCHHHHHHHHHHHHH-cCCCCcccccccCCc---HHHHHHHHHHHHHhCCCc-----EEEEcChHHHHHHHHHHhCCCCC
Confidence 688899988877643 334555555556764 455566778999999764 57788999999999999999999
Q ss_pred EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh---c--CCcEEEEcCCC--CCCCC
Q 016668 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---F--RPKLIIAGASA--YPRDF 266 (385)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~---~--~pklIi~~~s~--~~~~~ 266 (385)
.|++.+|.|.++.. .+...+..+ +.++ .+|++++++.++. . ++++|+++... +|...
T Consensus 128 ~vi~~~~~~~~~~~--------~~~~~~~~~--~~~~------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~ 191 (397)
T PRK06939 128 AIISDALNHASIID--------GVRLCKAKR--YRYA------NNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA 191 (397)
T ss_pred EEEEEhhhhHHHHH--------HHHhcCCce--EEeC------CCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC
Confidence 99999986654321 233445433 3322 2588999888753 2 56778776432 45567
Q ss_pred CHHHHHHHHHHcCcEEEEecccccccccc-Cc-cc--CCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 267 DYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VA--DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 267 dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~-~~--~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
++++|.++|+++|++|++|++|..|.... +. .+ ..+. +.|++++|+||++.|+++|++++++ ++.+.+.
T Consensus 192 ~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~------~~~~~l~ 265 (397)
T PRK06939 192 PLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRK------EVIDWLR 265 (397)
T ss_pred CHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCH------HHHHHHH
Confidence 89999999999999999999996664321 11 11 1122 5689999999999889999999887 5777665
Q ss_pred hccCCCcc-CCChHHHHHHHHHHHHHh
Q 016668 342 NAVFPGLQ-GGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 342 ~~~fp~~q-g~p~~~~iaala~Al~e~ 367 (385)
....+... +++....++++..+++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~al~~~ 292 (397)
T PRK06939 266 QRSRPYLFSNSLAPAIVAASIKVLELL 292 (397)
T ss_pred HhCccccccCCCCHHHHHHHHHHHHHH
Confidence 54333222 334444455555566654
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-18 Score=170.17 Aligned_cols=244 Identities=17% Similarity=0.134 Sum_probs=164.8
Q ss_pred HHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCC-CcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 116 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK-WGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 116 ~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~-~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
...++.+...+.+.+ |+|.+....|.. ..++|+.+.++++++||++..+ || +++++||++|+.++.+. +.|+
T Consensus 36 ~~~~~~~~~~~~~n~--gnp~~~~~~g~~-~~~~e~~~~~~~a~l~g~~~~~~~G--~~TsGgTean~~a~~~ar~~~~~ 110 (380)
T PRK02769 36 YSALKRFFSFSINNC--GDPYSKSNYPLN-SFDFERDVMNFFAELFKIPFNESWG--YITNGGTEGNLYGCYLARELFPD 110 (380)
T ss_pred HHHHHHHHHhhhccC--CCccccCCCCCC-hHHHHHHHHHHHHHHhCCCCCCCCE--EEecChHHHHHHHHHHHHHhCCC
Confidence 355555555554443 566543322332 3468888999999999997543 43 45667788988776554 4688
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcC--CCCCCCCCH
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA--SAYPRDFDY 268 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~--s~~~~~~dl 268 (385)
++|++++.+|.+.. +.+...|.....++ ++ .++.+|+++|++.+++. +|.+|++.. +.+|...|+
T Consensus 111 ~~ii~s~~~H~Sv~--------ka~~~lg~~~~~V~--~~-~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi 179 (380)
T PRK02769 111 GTLYYSKDTHYSVS--------KIARLLRIKSRVIT--SL-PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNI 179 (380)
T ss_pred cEEEeCCCceehHH--------HHHHHcCCCCceec--cC-CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCH
Confidence 99999887554321 23345565555555 44 36789999999999764 377776543 446788899
Q ss_pred HHHHHHHHHcC---cEEEEeccccccccccCcccCCCC---CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHh
Q 016668 269 PRMRQIADAVG---ALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 269 ~~I~~ia~~~g---a~livD~ah~~Gli~~g~~~~p~~---gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~ 341 (385)
++|.++|+++| +++++|+||+.+.+..-....+++ ++|.+++|+||++.+|.| |+++++++ +.+.+.
T Consensus 180 ~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~------~~~~~~ 253 (380)
T PRK02769 180 KEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKK------YVERIS 253 (380)
T ss_pred HHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehh------hhhhcc
Confidence 99999999998 699999999766542111111232 799999999999888987 88888874 333331
Q ss_pred h------ccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhc
Q 016668 342 N------AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSAC 381 (385)
Q Consensus 342 ~------~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~ 381 (385)
. ..-+.+.|+.+...++++-.+++.+-..+|++..++..+
T Consensus 254 ~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~ 299 (380)
T PRK02769 254 VDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLD 299 (380)
T ss_pred cCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 1 111245677777788888999988877777766655544
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=171.80 Aligned_cols=238 Identities=16% Similarity=0.150 Sum_probs=175.4
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+-|+|.+..+++.|+++|.....++.+ -++.+.+ +.+.+.++.+|+++.. + +.+.+.|||.|+.++
T Consensus 7 ~Ll~PGP~~v~~~V~~am~~~~~~h~s-----------~~F~~~~-~~~~~~L~~v~~t~~~-~-~~ll~gsGt~amEAa 72 (383)
T COG0075 7 LLLTPGPVPVPPRVLLAMARPMVGHRS-----------PDFVGIM-KEVLEKLRKVFGTENG-D-VVLLSGSGTLAMEAA 72 (383)
T ss_pred eeeeCCCCCCCHHHHHHhcCCCCCCCC-----------HHHHHHH-HHHHHHHHHHhcCCCC-c-EEEEcCCcHHHHHHH
Confidence 667899999999999999866544332 2333334 4467889999999842 2 567778899999999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-CCcEEEE--cCCC
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIA--GASA 261 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-~pklIi~--~~s~ 261 (385)
+.++++|||+||+.. +|.+++++. +.+...|..+..+..++ ...+|++++++.+++. ..|+|.+ +.++
T Consensus 73 v~sl~~pgdkVLv~~---nG~FG~R~~---~ia~~~g~~v~~~~~~w---g~~v~p~~v~~~L~~~~~~~~V~~vH~ETS 143 (383)
T COG0075 73 VASLVEPGDKVLVVV---NGKFGERFA---EIAERYGAEVVVLEVEW---GEAVDPEEVEEALDKDPDIKAVAVVHNETS 143 (383)
T ss_pred HHhccCCCCeEEEEe---CChHHHHHH---HHHHHhCCceEEEeCCC---CCCCCHHHHHHHHhcCCCccEEEEEeccCc
Confidence 999999999999986 366665542 34567777666665432 3479999999999743 3466644 4567
Q ss_pred CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCC-------
Q 016668 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPV------- 331 (385)
Q Consensus 262 ~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~------- 331 (385)
++...|+++|+++|++||+++++|+.-+.|-. +-.++ +.|+++++.+|+|.+|.| |++..+++..
T Consensus 144 TGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~-----~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~ 218 (383)
T COG0075 144 TGVLNPLKEIAKAAKEHGALLIVDAVSSLGGE-----PLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERK 218 (383)
T ss_pred ccccCcHHHHHHHHHHcCCEEEEEecccCCCc-----ccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCC
Confidence 78888999999999999999999997655522 33344 899999999999999999 7777776520
Q ss_pred ---chhHH---HHHHhh-ccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 332 ---LGVEL---ESAINN-AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 332 ---~~~~~---~~~i~~-~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
.+.++ .+..+. ..+| .+|..+.+.||..||+.++++++.
T Consensus 219 ~~~~ylDL~~~~~~~~~~~~~p---~Tppv~~i~aL~~al~~i~~EGle 264 (383)
T COG0075 219 HPSFYLDLKKWLKYMEKKGSTP---YTPPVNLIYALREALDLILEEGLE 264 (383)
T ss_pred CCceeecHHHHHHHHhhcCCCC---CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 11133 333333 2333 368999999999999999998774
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=176.16 Aligned_cols=233 Identities=19% Similarity=0.238 Sum_probs=157.4
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCC-CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~-~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~a 187 (385)
++..++++.|++++...+...+ ++|+.+.+ .+.. ..+..+.+++.+++++|+++++ .+++.++|.++..++.+
T Consensus 10 aa~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~r~~la~~~g~~~~~---v~~~~g~t~a~~~~l~~ 83 (402)
T TIGR02006 10 AATTPVDPRVAEKMMPYLTEKF--GNPASRSHSFGWE-AEEAVENARNQVAELIGADSRE---IVFTSGATESNNLAIKG 83 (402)
T ss_pred CcCCCCCHHHHHHHHHHHHhcC--CCCChhhhHHHHH-HHHHHHHHHHHHHHHhCCCCCe---EEEeCCHHHHHHHHHHH
Confidence 5566889999999987775543 44443211 1222 2233444788899999998742 34445566798888776
Q ss_pred h----ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC-
Q 016668 188 I----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY- 262 (385)
Q Consensus 188 l----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~- 262 (385)
+ .++||+|++.+++|.+.... +..+...|..+..++ ++ +++.+|++++++.+++ ++++|++..+++
T Consensus 84 l~~~~~~~g~~Vi~~~~~h~s~~~~-----~~~~~~~g~~v~~v~--~~-~~~~~d~~~l~~~l~~-~~~lv~v~~~~n~ 154 (402)
T TIGR02006 84 IAHFYKSKGNHIITSKTEHKAVLDT-----CRYLEREGFEVTYLP--PK-SNGLIDLEELKAAIRD-DTILVSIMHVNNE 154 (402)
T ss_pred HHHhhcCCCCEEEECCCccHHHHHH-----HHHHHhcCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CCEEEEEECCCcC
Confidence 5 37899999998766543211 112233466555554 44 3578999999999865 688888776654
Q ss_pred -CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 263 -PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 263 -~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
|...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||+ .||.| |+++.+++.. .
T Consensus 155 tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~-----~~~~~~~~~D~~~~s~~K~-~gp~G~G~l~~~~~~~------~ 222 (402)
T TIGR02006 155 IGVIQDIAAIGEICRERKVFFHVDAAQSVGKI-----PINVNELKVDLMSISGHKI-YGPKGIGALYVRRKPR------V 222 (402)
T ss_pred ceecccHHHHHHHHHHcCCEEEEEcchhcCCc-----ccCccccCCCEEEEehhhh-cCCCceEEEEEccCCC------C
Confidence 5678999999999999999999999987643 22222 789999999995 57876 7777776421 1
Q ss_pred HHhhccC------CCccCCChHHHHHHHHHHHHHhh
Q 016668 339 AINNAVF------PGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 339 ~i~~~~f------p~~qg~p~~~~iaala~Al~e~~ 368 (385)
++..... ....|+++...+++++.+++.+.
T Consensus 223 ~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~ 258 (402)
T TIGR02006 223 RLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAK 258 (402)
T ss_pred CCCceecCCCccCCccCCCccHHHHHHHHHHHHHHH
Confidence 1111000 11246788899999999998764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=173.98 Aligned_cols=234 Identities=14% Similarity=0.164 Sum_probs=159.8
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTA 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~a 187 (385)
++..++++.|++++...+...+ +.++..+..|....+. .+.+++.+++++|++++ +|.+++| ++++..++.+
T Consensus 7 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~r~~la~~~g~~~~----~i~~~~g~t~a~~~~~~~ 79 (381)
T PRK02948 7 AATTPMSKEALQTYQKAASQYF--GNESSLHDIGGTASSL-LQVCRKTFAEMIGGEEQ----GIYFTSGGTESNYLAIQS 79 (381)
T ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCccccHHHHHHHHH-HHHHHHHHHHHhCCCCC----eEEEeCcHHHHHHHHHHH
Confidence 5566889999999987776433 3444444444443334 44578899999999764 4555555 6798888877
Q ss_pred hc----cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC-
Q 016668 188 IL----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY- 262 (385)
Q Consensus 188 ll----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~- 262 (385)
++ ++||+|++.+.+|.++.... ..+...|..+..++ ++ +++.+|++++++.+++ ++++|++..+++
T Consensus 80 ~~~~~~~~g~~vv~~~~~h~s~~~~~-----~~~~~~g~~v~~v~--~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~ 150 (381)
T PRK02948 80 LLNALPQNKKHIITTPMEHASIHSYF-----QSLESQGYTVTEIP--VD-KSGLIRLVDLERAITP-DTVLASIQHANSE 150 (381)
T ss_pred HHHhccCCCCEEEECCcccHHHHHHH-----HHHHhCCCEEEEEe--eC-CCCCCCHHHHHHhcCC-CCEEEEEECCcCC
Confidence 75 67999999887665432211 12344566555555 44 3578999999998864 688888876655
Q ss_pred -CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 263 -PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 263 -~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
|...|+++|.++|+++|+++++|++|..|.. +..+. ++|++++|+||+ .||.| |+++.+++. .+..
T Consensus 151 tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~-----~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~~~~~----~~~~ 220 (381)
T PRK02948 151 IGTIQPIAEIGALLKKYNVLFHSDCVQTFGKL-----PIDVFEMGIDSLSVSAHKI-YGPKGVGAVYINPQV----RWKP 220 (381)
T ss_pred cEeehhHHHHHHHHHHcCCEEEEEChhhcccc-----ccCcccCCCCEEEecHHhc-CCCCcEEEEEEcCCC----CCCC
Confidence 4678999999999999999999999877632 11222 789999999996 47876 888877642 1111
Q ss_pred HHh--hccCCCccCCChHHHHHHHHHHHHHhh
Q 016668 339 AIN--NAVFPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 339 ~i~--~~~fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
... ........++++...++|+..|++...
T Consensus 221 ~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~ 252 (381)
T PRK02948 221 VFPGTTHEKGFRPGTVNVPGIAAFLTAAENIL 252 (381)
T ss_pred cccCCCCCCCcCCCCccHHHHHHHHHHHHHHH
Confidence 000 000111346788888999999998753
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=173.42 Aligned_cols=228 Identities=18% Similarity=0.256 Sum_probs=157.7
Q ss_pred cCCCCC----cHHHHHHHhhHhhccCCCCCC-CCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 109 ASENFT----SRAVMEAVGSCLTNKYSEGLP-GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 109 asen~~----s~~V~~al~s~l~~~y~~g~p-~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
.+.+|+ .|.|++++...+.. +..+.. ++.+..|.+...+||+ ++++++|.+. .++++||+.||..
T Consensus 60 ~~~~YL~l~~~p~v~~a~~~~~~~-~~~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~-----~~~~~sG~~An~~ 129 (407)
T PRK07179 60 QSNDYLNLSGHPDIIKAQIAALQE-EGDSLVMSAVFLHDDSPKPQFEK----KLAAFTGFES-----CLLCQSGWAANVG 129 (407)
T ss_pred ecCCccCCCCCHHHHHHHHHHHHH-hCCCCCccccccCCchHHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHH
Confidence 566665 79999999888754 321111 3345555565566664 6889999875 3678899999999
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC-
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY- 262 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~- 262 (385)
++.++.++||.|++..+.|.+.. ..+...|. +..+++ ..|++++++.+++.++++|+++.+++
T Consensus 130 ~l~~l~~~g~~v~~~~~~h~s~~--------~~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~lV~v~~v~n~ 193 (407)
T PRK07179 130 LLQTIADPNTPVYIDFFAHMSLW--------EGVRAAGA--QAHPFR------HNDVDHLRRQIERHGPGIIVVDSVYST 193 (407)
T ss_pred HHHHhCCCCCEEEEECCcCHHHH--------HHHHHCCC--eEEEec------CCCHHHHHHHHHhcCCeEEEECCCCCC
Confidence 99999999999998765443221 12234444 333432 36999999998654578888876554
Q ss_pred -CCCCCHHHHHHHHHHcCcEEEEeccccccccc-cCc-ccCCC--C-CCcEEEECCCccCccccEEEEEEeCCCCchhHH
Q 016668 263 -PRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASV-VADPF--K-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVEL 336 (385)
Q Consensus 263 -~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~-~g~-~~~p~--~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~ 336 (385)
|...|+++|.++|+++|++|++|++|+.|... .|. ....+ . .+|++++|+||+++ +++|++++++ ++
T Consensus 194 tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g-~~~G~l~~~~------~~ 266 (407)
T PRK07179 194 TGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA-GRAGIITCPR------EL 266 (407)
T ss_pred CCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh-ccCeEEEeCH------HH
Confidence 57889999999999999999999999766432 111 01112 2 56999999999985 5799999887 56
Q ss_pred HHHHhhccCCCcc-CCChHHHHHHHHHHHHHhhC
Q 016668 337 ESAINNAVFPGLQ-GGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 337 ~~~i~~~~fp~~q-g~p~~~~iaala~Al~e~~~ 369 (385)
.+.+.....+... +++....++++..+++.+..
T Consensus 267 ~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~ 300 (407)
T PRK07179 267 AEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIES 300 (407)
T ss_pred HHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhc
Confidence 6666544444433 44566777777777776543
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-20 Score=183.25 Aligned_cols=210 Identities=20% Similarity=0.232 Sum_probs=144.2
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
+++.++++||++.. .+.++||+ +|.++++++++|||+|++.. ++|.|.- ..+.+.|+...+++..
T Consensus 71 Ae~~aA~~fGAd~t-----~flvnGsT~g~~a~i~a~~~~gd~VLv~R---N~HkSv~-----~alil~ga~Pvyi~p~- 136 (417)
T PF01276_consen 71 AEELAARAFGADKT-----FFLVNGSTSGNQAMIMALCRPGDKVLVDR---NCHKSVY-----NALILSGAIPVYIPPE- 136 (417)
T ss_dssp HHHHHHHHHTESEE-----EEESSHHHHHHHHHHHHHTTTTCEEEEET---T--HHHH-----HHHHHHTEEEEEEEEE-
T ss_pred HHHHHHHhcCCCeE-----EEEecCchHHHHHHHHHhcCCCCEEEEcC---CcHHHHH-----HHHHHcCCeEEEecCC-
Confidence 66789999999984 45567765 99999999999999999977 4555421 2456777766555433
Q ss_pred cCCCC---CCCH-----HHHHHHhhhcC-Cc---EE-EEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcc
Q 016668 232 DESTG---LVDY-----DMLEKTAILFR-PK---LI-IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 232 ~~~~~---~iD~-----d~le~~i~~~~-pk---lI-i~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~ 298 (385)
+++.+ .+++ +.|++.++++. .| ++ +++++.+|...|+++|.++|+++|..|++|+||++.+.+....
T Consensus 137 ~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp 216 (417)
T PF01276_consen 137 DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLP 216 (417)
T ss_dssp E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGG
T ss_pred ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCc
Confidence 33333 4666 99999997632 23 35 4555567899999999999999999999999999887766444
Q ss_pred cCCCC-CCc-------EEEECCCccCccc-cEEEEEEeCCC-CchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhh
Q 016668 299 ADPFK-YCD-------VVTTTTHKSLRGP-RGGMIFFKKDP-VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 299 ~~p~~-gaD-------iv~~S~hK~l~Gp-rgG~I~~~~~~-~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
.+.+. ++| +++.|+||++++. ++++|..+++. + -.++++.+.......+|+...+|++.+|.+++.
T Consensus 217 ~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v----~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~ 292 (417)
T PF01276_consen 217 RSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIV----DHERVNEALSMHQTTSPSYPLMASLDVARAQME 292 (417)
T ss_dssp TTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCT----THHHHHHHHHHHS-SS--HHHHHHHHHHHHHHS
T ss_pred cchhhccCccccccceeeeechhhcccccccceEEEecCCCcc----cHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 45566 899 9999999999887 67899998873 2 234555543333456899999999999999884
Q ss_pred CchHHHHHHHHh
Q 016668 369 SPEFKVYQNKSA 380 (385)
Q Consensus 369 ~~~~~~y~~~v~ 380 (385)
.++.++..++.+
T Consensus 293 ~~~G~~l~~~~i 304 (417)
T PF01276_consen 293 EEEGRELLEEAI 304 (417)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 444444444433
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-18 Score=171.59 Aligned_cols=238 Identities=14% Similarity=0.080 Sum_probs=162.9
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhccccc--cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELI--ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Li--asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~ 156 (385)
+++++..++++.+..+.+.... ...++|- .++..+++.+++++...+.+. ...|+. ..|.+ +|++..+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~-~~~Y~~---~~G~~---~Lr~aia~~ 103 (413)
T PLN00175 32 VAKRLEKFKTTIFTQMSSLAIK-HGAINLGQGFPNFDGPDFVKEAAIQAIRDG-KNQYAR---GFGVP---ELNSAIAER 103 (413)
T ss_pred hhHHhhcCCCCHHHHHHHHhhc-CCeEecCCCCCCCCCCHHHHHHHHHHHhcC-CCCcCC---CCCCH---HHHHHHHHH
Confidence 4677888888777655544322 2334444 345556888999988776542 223443 23544 788888888
Q ss_pred HHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC
Q 016668 157 ALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (385)
Q Consensus 157 la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 235 (385)
+.+.+|.+.+ +..+|.+++|+ +|+..++.++++|||+|++.+|.|..+.. .+...|..+..++ +++++
T Consensus 104 ~~~~~g~~~~-~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~--~~~~~ 172 (413)
T PLN00175 104 FKKDTGLVVD-PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA--------TLSMAGAKIKTVT--LRPPD 172 (413)
T ss_pred HHHHhCCCCC-CCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCCEEEEEE--CCccc
Confidence 8888886532 11136666665 69999999999999999999987654421 3456676555444 55445
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCC--CCC-C--
Q 016668 236 GLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FKY-C-- 305 (385)
Q Consensus 236 ~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p--~~g-a-- 305 (385)
+.+|+++|++.+.. ++|+|+++.++||+ .. ++++|.++|+++|+++++|+++ ..+.+.+...+. +.+ .
T Consensus 173 ~~~~~~~l~~~~~~-~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~s~~~~~~~~~~ 250 (413)
T PLN00175 173 FAVPEDELKAAFTS-KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVY-DKLAFEGDHISMASLPGMYER 250 (413)
T ss_pred CCCCHHHHHHhcCc-CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEeccc-CccccCCcccChhhCCCCcCc
Confidence 78999999998865 78999988888774 33 4788999999999999999997 455544322211 222 1
Q ss_pred cEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 306 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 306 Div~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
-|++.|++|+| +|+|.|++++++ ++.+.+...
T Consensus 251 vi~i~SfSK~~~~~G~RiG~~v~~~------~l~~~l~~~ 284 (413)
T PLN00175 251 TVTMNSLGKTFSLTGWKIGWAIAPP------HLTWGVRQA 284 (413)
T ss_pred EEEEecchhhccCcchheeeeEeCH------HHHHHHHHH
Confidence 26789999997 788999999987 566666543
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-19 Score=173.88 Aligned_cols=198 Identities=20% Similarity=0.249 Sum_probs=151.4
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
.+..++++.|++++...+..-+ |+|.+++| |.+.-+.+|+ +|+.+++++|+++.+ .+++.++|++|..++.++
T Consensus 50 ~at~p~~~~Vldam~~~~~~~~--~nPh~~~y-~w~~~~~~E~-aR~~VAklInAd~~d---IiFts~ATEs~Nlvl~~v 122 (428)
T KOG1549|consen 50 QATGPMDPRVLDAMLPYLLEYL--GNPHSRSY-GWKAEDAVEA-AREQVAKLINADPSD---IVFTSGATESNNLVLKGV 122 (428)
T ss_pred CcCCCCCHHHHHHHHHHHHHhh--cCCCcccc-chhhhHHHHH-HHHHHHHHhCCCCCc---EEEeCCchHHHHHHHHHh
Confidence 5677889999999998877655 68888733 5555566776 899999999999863 344455677999999988
Q ss_pred -ccCCC----EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC--
Q 016668 189 -LKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (385)
Q Consensus 189 -l~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-- 261 (385)
+.++| +|+.++.+|.++.- + +..+.-.|. ++..++++ +++.+|.+.+++.++. +|++|.+...+
T Consensus 123 ~~~~~~~~~k~iitl~~eH~~v~~-s----~~~l~~~g~--~Vt~lpv~-~~~~~d~~~~~~~i~~-~T~lv~I~~Vnn~ 193 (428)
T KOG1549|consen 123 ARFFGDKTKKHIITLQTEHPCVLD-S----CRALQEEGL--EVTYLPVE-DSGLVDISKLREAIRS-KTRLVSIMHVNNE 193 (428)
T ss_pred hccccccccceEEEecccCcchhH-H----HHHHHhcCe--EEEEeccC-ccccccHHHHHHhcCC-CceEEEEEecccC
Confidence 66788 89998876655421 1 122334454 44444465 5789999999999976 89999876543
Q ss_pred CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCcccc-EEEEEEeC
Q 016668 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPR-GGMIFFKK 328 (385)
Q Consensus 262 ~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gpr-gG~I~~~~ 328 (385)
.+..+|+++|+++|++.|+.+++|+||+.|.+ +-.+. ++|++++|.||++ ||+ .|++++++
T Consensus 194 ~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i-----~vDV~eln~D~~s~s~HK~y-gp~~iGaLYvr~ 257 (428)
T KOG1549|consen 194 IGVLQPVKEIVKICREEGVQVHVDAAQAVGKI-----PVDVQELNADFLSISAHKIY-GPPGIGALYVRR 257 (428)
T ss_pred ccccccHHHHHHHhCcCCcEEEeehhhhcCCc-----cccHHHcCchheeeeccccc-CCCcceEEEEcc
Confidence 35778999999999999999999999998865 22333 8999999999976 676 59999986
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-18 Score=166.05 Aligned_cols=232 Identities=19% Similarity=0.201 Sum_probs=167.8
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC-CCCcceeecCCcHHHHHHHHHHh
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~-~~~~~~V~~~sGs~A~~~a~~al 188 (385)
-+-.++|.|++|+..... +-..|||. +.+ ++-+..++|.++..+.+. .+| .+...+...++..++.++
T Consensus 35 MDf~~pp~i~~Al~~rvd-hGvfGY~~-----~~~---~~~~ai~~w~~~r~~~~i~~e~--i~~~p~VVpgi~~~I~~~ 103 (388)
T COG1168 35 MDFPTPPEIIEALRERVD-HGVFGYPY-----GSD---ELYAAIAHWFKQRHQWEIKPEW--IVFVPGVVPGISLAIRAL 103 (388)
T ss_pred ccCCCCHHHHHHHHHHHh-cCCCCCCC-----CCH---HHHHHHHHHHHHhcCCCCCcce--EEEcCcchHhHHHHHHHh
Confidence 467789999999987764 34457774 222 456667789999988763 344 344444557999999999
Q ss_pred ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCC
Q 016668 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF 266 (385)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~ 266 (385)
.+|||.|++..|.|.... ..+...|.++...|+..+...+.||+++||+.+.+.++|++++++|+|| +.+
T Consensus 104 T~~gd~Vvi~tPvY~PF~--------~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvw 175 (388)
T COG1168 104 TKPGDGVVIQTPVYPPFY--------NAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVW 175 (388)
T ss_pred CcCCCeeEecCCCchHHH--------HHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccc
Confidence 999999999998764321 2455667755545543333334789999999998777899999999987 454
Q ss_pred ---CHHHHHHHHHHcCcEEEEeccccccccccCcccCC---CC--CCc--EEEECCCccC--ccccEEEEEEeCCCCchh
Q 016668 267 ---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK--YCD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGV 334 (385)
Q Consensus 267 ---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p---~~--gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~ 334 (385)
++++|.+||.+||++||+|+.| +.++..|....| ++ .+| +.++|.+|+| +|.+.+.++..++
T Consensus 176 t~eeL~~i~elc~kh~v~VISDEIH-aDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~----- 249 (388)
T COG1168 176 TKEELRKIAELCLRHGVRVISDEIH-ADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNR----- 249 (388)
T ss_pred cHHHHHHHHHHHHHcCCEEEeeccc-ccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCH-----
Confidence 5888999999999999999999 688877732222 23 456 6788999997 7888877766665
Q ss_pred HHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 335 ELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 335 ~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
+++.+..+.+-...+++|+...+.|.-+|+++
T Consensus 250 ~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~ 281 (388)
T COG1168 250 ELRAKFLKRLKRNGLHGPSALGIIATEAAYNQ 281 (388)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Confidence 56555544444455677888888887777663
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=170.09 Aligned_cols=216 Identities=17% Similarity=0.149 Sum_probs=145.3
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK 190 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~ 190 (385)
-+++|+.|++++.....+ | + + .+++.+.++++++++||.+. .+.+.++|.|++.++.++++
T Consensus 22 ~s~~~~~v~~a~~~~~~~-~---------~-~---~~~~~~~~~~~~a~~~g~~~-----~~~~~g~t~al~~al~al~~ 82 (363)
T TIGR01437 22 VSTVSDEVADAQKRGAQN-Y---------F-E---IKELVNKTGEYIANLLGVED-----AVIVSSASAGIAQSVAAVIT 82 (363)
T ss_pred CCCCCHHHHHHHHHHHhc-C---------C-C---HHHHHHHHHHHHHHhhCCCe-----EEEEcCHHHHHHHHHHHHhc
Confidence 345799999999876533 2 1 2 22555667888999999875 25677888899999999999
Q ss_pred CCC---------------EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEE
Q 016668 191 PHD---------------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255 (385)
Q Consensus 191 pGD---------------~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklI 255 (385)
||| +|+++.+.+ ..++. .....+.+.|..+ +.++. ++.+|++++++.+++ ++|+|
T Consensus 83 ~Gd~~~~~~~~~s~~~~~eVi~~~~~~---~~~~~-~~~~~~~~~g~~~--v~v~~---~~~~d~~~le~ai~~-~t~ai 152 (363)
T TIGR01437 83 RGNRYLVENLHDSKIEVNEVVLPKGHN---VDYGA-PVETMVRLGGGKV--VEAGY---ANECSAEQLEAAITE-KTAAI 152 (363)
T ss_pred CCCcchhhcccccccccceEEEECccc---hhcCC-chHHHHHhcCCeE--EEEcC---CCCCCHHHHHHhcCh-hceEE
Confidence 999 666655211 11110 0001234566543 44333 346999999999975 78876
Q ss_pred E-EcCCC--CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCccccEEEEEEeCCCC
Q 016668 256 I-AGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPV 331 (385)
Q Consensus 256 i-~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~ 331 (385)
+ ++.++ ++...|+++|.++|+++|+++++|++|...+ ..... ++|++++|+||+|+||++|+++.++
T Consensus 153 ~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~------~~~~~~g~D~~~~S~~K~l~gp~~G~l~~~~--- 223 (363)
T TIGR01437 153 LYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL------QKYYRLGADLVIYSGAKAIEGPTSGLVLGKK--- 223 (363)
T ss_pred EEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch------HHHHHcCCCEEEEeCCcccCCCceEEEEEcH---
Confidence 5 44433 3467899999999999999999999995221 11122 6899999999999999999988765
Q ss_pred chhHHHHHHhhcc---CCCccCCChHHHHHHHHHHHHHhhC
Q 016668 332 LGVELESAINNAV---FPGLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 332 ~~~~~~~~i~~~~---fp~~qg~p~~~~iaala~Al~e~~~ 369 (385)
++.+.+.... ....+. ....++++..|++++..
T Consensus 224 ---~~i~~~~~~~~~~~~~~~~--~~~~~~gl~aAl~~~~~ 259 (363)
T TIGR01437 224 ---KYIEWVKLQSKGIGRAMKV--GKENILGLTAALEQYLS 259 (363)
T ss_pred ---HHHHHHHhccCCCcceecc--CHHHHHHHHHHHHHHHc
Confidence 4555443211 111121 12347888888887754
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=165.29 Aligned_cols=254 Identities=17% Similarity=0.150 Sum_probs=166.9
Q ss_pred ccccCCCC-CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCC-CcceeecCCcHHHHHH
Q 016668 106 ELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK-WGVNVQPLSGSPANFE 183 (385)
Q Consensus 106 ~Liasen~-~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~-~~~~V~~~sGs~A~~~ 183 (385)
.+-.+.|. ..+.+++++...+.+.+ |+|.+.+..|.. ..++|+.+.++++++||+++++ || +++++||+||+.
T Consensus 26 ~~gy~~~~~~~~~~~~~~~~~~~~~~--gnP~s~~~~g~~-a~~~e~~v~~~ia~llg~~~~~~~G--~fTsGGTEaNl~ 100 (374)
T PLN03032 26 HFGYPYNLDFDYGELSQLMKYSINNL--GDPFIESNYGVH-SRQFEVGVLDWFARLWELEKDEYWG--YITTCGTEGNLH 100 (374)
T ss_pred ccCCCchhccChHHHHHHHHhcccCC--CCCcccCCCCcc-HHHHHHHHHHHHHHHhCCCCccCCE--EEeCchHHHHHH
Confidence 33344444 45567888887766554 677765443433 4478888999999999998654 43 557788999998
Q ss_pred HHHHhc--cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEE--
Q 016668 184 VYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIA-- 257 (385)
Q Consensus 184 a~~all--~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~-- 257 (385)
++.+.. .++++|+++..+| .+. .+.+...|..+..++ ++ .++.+|+++|++.+++. +|.+|++
T Consensus 101 al~~ar~~~~~~~vi~s~~~H---~Sv-----~kaa~~lg~~~~~V~--~d-~~g~id~~~L~~~i~~~~~~~~lvv~ta 169 (374)
T PLN03032 101 GILVGREVFPDGILYASRESH---YSV-----FKAARMYRMEAVKVP--TL-PSGEIDYDDLERALAKNRDKPAILNVNI 169 (374)
T ss_pred HHHHHHHhCCCcEEEeCCCce---eHH-----HHHHHHcCCCCeEee--eC-CCCcCcHHHHHHHHHHcCCCCEEEEEEe
Confidence 887653 3566788776544 221 134455666555555 55 46899999999999753 4667665
Q ss_pred cCCCCCCCCCHHHHHHHHHHcC-----cEEEEecccccccccc-Cc-ccCCCC-CCcEEEECCCccCccccE-EEEEEeC
Q 016668 258 GASAYPRDFDYPRMRQIADAVG-----ALLMMDMAHISGLVAA-SV-VADPFK-YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (385)
Q Consensus 258 ~~s~~~~~~dl~~I~~ia~~~g-----a~livD~ah~~Gli~~-g~-~~~p~~-gaDiv~~S~hK~l~Gprg-G~I~~~~ 328 (385)
+.+.+|...|+++|+++|+++| +|+++|+|++.+.+.- .. ....+. ++|.++.|+||++..|.| |++++++
T Consensus 170 gtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~ 249 (374)
T PLN03032 170 GTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRK 249 (374)
T ss_pred cCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEc
Confidence 4556788899999999999996 5999999987665421 11 111222 689999999997765987 8888887
Q ss_pred CCCchhHHHHHHhh-cc-----CCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhc
Q 016668 329 DPVLGVELESAINN-AV-----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSAC 381 (385)
Q Consensus 329 ~~~~~~~~~~~i~~-~~-----fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~ 381 (385)
+ +.+.+.. .. -+.++|+-.-...+++=.+|+..=.++|++..++.++
T Consensus 250 ~------~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~ 302 (374)
T PLN03032 250 K------HVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMR 302 (374)
T ss_pred h------hhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4 3333321 11 1234555443444444556666555566655555544
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=170.98 Aligned_cols=170 Identities=22% Similarity=0.267 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcc
Q 016668 144 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (385)
Q Consensus 144 ~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (385)
+.++++|+ .++++||.++ .+.++|||.|+.+++.++ ++|||+|+++...+.+.. ..+...|.
T Consensus 25 ~~~~~fE~----~~a~~~g~~~-----~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~--------~ai~~~G~ 87 (363)
T PF01041_consen 25 PYVEEFEK----EFAEYFGVKY-----AVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATA--------SAILWAGA 87 (363)
T ss_dssp HHHHHHHH----HHHHHHTSSE-----EEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHH--------HHHHHTT-
T ss_pred HHHHHHHH----HHHHHhCCCe-----EEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHH--------HHHHHhcc
Confidence 56777876 5889999887 478899999999999999 899999999876543321 24556676
Q ss_pred eEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC
Q 016668 223 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF 302 (385)
Q Consensus 223 ~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~ 302 (385)
+++.++++++++.+|++++++.+++ ++|+|++. +.+|...|+++|.++|+++|++||.|+||+.|....|. ++
T Consensus 88 --~pv~~Di~~~~~~id~~~~~~~i~~-~t~ai~~~-h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~---~~ 160 (363)
T PF01041_consen 88 --EPVFVDIDPETLNIDPEALEKAITP-KTKAILVV-HLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGR---PV 160 (363)
T ss_dssp --EEEEE-BETTTSSB-HHHHHHHHHT-TEEEEEEE--GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTE---ET
T ss_pred --EEEEEeccCCcCCcCHHHHHHHhcc-CccEEEEe-cCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCE---ec
Confidence 5667778888999999999999976 67888764 34666779999999999999999999999988765553 22
Q ss_pred C-CCcEEEECCC--ccCccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 303 K-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 303 ~-gaDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
. ..|+.++||| |.+....||+|+++++ ++.+++..
T Consensus 161 G~~gd~~~fSf~~~K~i~~geGG~v~~~~~-----~~~~~~~~ 198 (363)
T PF01041_consen 161 GSFGDIAIFSFHPTKIITTGEGGAVVTNDP-----ELAERARA 198 (363)
T ss_dssp TSSSSEEEEESSTTSSS-SSS-EEEEESTH-----HHHHHHHH
T ss_pred cCCCCceEecCCCCCCCcCCCCeeEEecHH-----HHHHHhhh
Confidence 2 5699999997 8898889999999997 77777654
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-18 Score=168.19 Aligned_cols=233 Identities=15% Similarity=0.073 Sum_probs=156.0
Q ss_pred ccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 104 ~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
.+-+.|....+++.|++++.... . + + +.++.+.++ .+++.+++++|+++++- ..+.+.|||.|+..
T Consensus 4 ~~l~~pgp~~~~~~v~~~~~~~~-~-----~-----~-~~~~~~~~~-~~r~~la~l~~~~~~~~-~i~~t~~~t~al~~ 69 (363)
T TIGR02326 4 YLLLTPGPLTTSRTVKEAMLFDW-C-----T-----W-DSDYNIVVE-QIRQQLLALATAEEGYT-SVLLQGSGTFAVEA 69 (363)
T ss_pred eeEecCCCCCCCHHHHHHhCCCC-C-----C-----C-ChHHHHHHH-HHHHHHHHHhCCCCCce-EEEEcCCCHHHHHH
Confidence 34577888899999999976432 1 1 1 234444554 47889999999975211 23556778899999
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-CCcEEEEcC--C
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGA--S 260 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-~pklIi~~~--s 260 (385)
++.+++.+||++++..+ +.+...+ ...+...|..+..++ .+ +++.+|++++++.++.. +++++.+.. +
T Consensus 70 ~~~~l~~~~~~vlv~~~---~~~~~~~---~~~a~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~ 140 (363)
T TIGR02326 70 VIGSAVPKDGKLLVVIN---GAYGARI---VQIAEYLGIPHHVVD--TG-EVEPPDVVEVEAILAADPAITHIALVHCET 140 (363)
T ss_pred HHHhcCCCCCeEEEEeC---ChhhHHH---HHHHHHcCCceEEEe--CC-CCCCCCHHHHHHHHhhCCCccEEEEEeecC
Confidence 99999999998776543 1111110 012345676666555 33 35679999999998653 356665433 3
Q ss_pred CCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 261 ~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
.+|...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||+|.||.| |+++.+++ ..
T Consensus 141 ~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~-----~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~------~~ 209 (363)
T TIGR02326 141 TTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGI-----PIDIAELHIDYLISSANKCIQGVPGFGFVIARQA------EL 209 (363)
T ss_pred CccccCcHHHHHHHHHHcCCEEEEEccccccCc-----ccchhhcCccEEEecCccccccCCcceEEEECHH------HH
Confidence 366788999999999999999999999876532 22333 789999999999988887 99988874 33
Q ss_pred HHHhhccC----------------CC-ccCCChHHHHHHHHHHHHHhhCc
Q 016668 338 SAINNAVF----------------PG-LQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 338 ~~i~~~~f----------------p~-~qg~p~~~~iaala~Al~e~~~~ 370 (385)
+++..... ++ ...++....+.++..|++++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~ 259 (363)
T TIGR02326 210 AACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKE 259 (363)
T ss_pred HHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 32211000 01 11145667888888888877554
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=169.82 Aligned_cols=191 Identities=18% Similarity=0.170 Sum_probs=137.6
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHD 193 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pGD 193 (385)
++.-.+++...+...+. +.| +...++|+ ++++++|+++ .|.++|||.|+..++.++ ++|||
T Consensus 13 ~~~e~~~~~~~l~~~~~--------~~g-~~~~~le~----~la~~~g~~~-----~v~~~sgt~al~lal~al~~~~Gd 74 (379)
T PRK11658 13 GDEELAAVKEVLRSGWI--------TTG-PKNQALEQ----AFCQLTGNQH-----AIAVSSATAGMHITLMALGIGPGD 74 (379)
T ss_pred CHHHHHHHHHHHHcCCc--------cCC-HhHHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCC
Confidence 34456666655543221 112 44556665 5888999976 366789999999999999 89999
Q ss_pred EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHH
Q 016668 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQ 273 (385)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ 273 (385)
+|+++++.|.++.. .+...|..+..+ +++++++.+|++++++.+.+ ++|+|+...+ +|...|+++|.+
T Consensus 75 ~Viv~~~~~~~~~~--------~~~~~G~~~v~v--d~~~~~~~~d~~~l~~~i~~-~tkav~~~~~-~G~~~d~~~i~~ 142 (379)
T PRK11658 75 EVITPSLTWVSTLN--------MIVLLGATPVMV--DVDRDTLMVTPEAIEAAITP-RTKAIIPVHY-AGAPADLDAIRA 142 (379)
T ss_pred EEEECCCcHHHHHH--------HHHHcCCEEEEE--ecCCCcCCcCHHHHHHhccc-CCeEEEEeCC-CCCcCCHHHHHH
Confidence 99999986654321 334567654444 46656678999999999865 7898875443 677889999999
Q ss_pred HHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 274 IADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 274 ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
+|+++|+++++|++|+.|....|.....+ +.+++.++.+|.+.+++||+++++++ ++.+++.
T Consensus 143 ~a~~~gi~vi~D~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g~GG~v~~~~~-----~~~~~~~ 204 (379)
T PRK11658 143 IGERYGIPVIEDAAHAVGTYYKGRHIGAR-GTAIFSFHAIKNITCAEGGLVVTDDD-----ELADRLR 204 (379)
T ss_pred HHHHcCCeEEEECCCccCCeECCeecCCC-CCEEEeCCCCCcCcccCceEEEECCH-----HHHHHHH
Confidence 99999999999999988876544321111 44666777779999999999998765 5655554
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-18 Score=169.39 Aligned_cols=173 Identities=19% Similarity=0.200 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcc
Q 016668 144 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (385)
Q Consensus 144 ~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (385)
+..+++|+ .+++++|.++ .+.++||+.|+..++.++ ++|||+|+++++.+.+.. ..+...|.
T Consensus 29 ~~~~~le~----~la~~~g~~~-----~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~--------~~~~~~G~ 91 (380)
T TIGR03588 29 PTVPAFEE----ALAEYVGAKY-----AVAFNSATSALHIACLALGVGPGDRVWTTPITFVATA--------NCALYCGA 91 (380)
T ss_pred hhHHHHHH----HHHHHHCCCe-----EEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH--------HHHHHcCC
Confidence 33455654 5888999976 356788999999999999 899999999988654331 13345676
Q ss_pred eEEEEeccccCCCCCCCHHHHHHHhhh---cCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 223 YFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 223 ~~~~i~~~~~~~~~~iD~d~le~~i~~---~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
.+. .++++++++.+|++++++.+++ .++|+|++.. .+|...|+++|.++|+++|++||+|++|+.|....+...
T Consensus 92 ~~~--~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~-~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~ 168 (380)
T TIGR03588 92 KVD--FVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD-FAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPV 168 (380)
T ss_pred EEE--EEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC-CCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeC
Confidence 544 4446656788999999999962 3688887643 367778999999999999999999999998865433211
Q ss_pred CCCCCCcEEEECCC--ccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 300 DPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 300 ~p~~gaDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
...+++|+.++|+| |++.++.||+++++++ ++.+++.
T Consensus 169 g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~-----~~~~~~~ 207 (380)
T TIGR03588 169 GNCRYADATVFSFHPVKIITTAEGGAVTTNDE-----ELAERMR 207 (380)
T ss_pred CCccccceEEEecCCCCcccccCceEEEECCH-----HHHHHHH
Confidence 11124599999998 8898889999999876 5666554
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-18 Score=168.99 Aligned_cols=229 Identities=24% Similarity=0.292 Sum_probs=170.0
Q ss_pred cccCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCCcH-HHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 107 LIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNE-YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 107 Liasen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G~~-~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
..+|+||. +|.++++....+. +|.-|..++|...|+. ...+||+ ++++++|.+. .+.++||..||
T Consensus 43 nf~SNdYLGLa~~~~~~~a~~~~~~-~~g~g~~gsR~i~G~~~~h~~LE~----~lA~f~g~e~-----al~f~SGy~AN 112 (388)
T COG0156 43 NFCSNDYLGLASHPELIEAAKAAIR-RYGVGAGGSRLISGTSDLHVELEE----ELADFLGAEA-----ALLFSSGFVAN 112 (388)
T ss_pred eeeccCcccccCCHHHHHHHHHHHH-HhCCCCCCcCcccCCcHHHHHHHH----HHHHHhCCCc-----EEEEcccchhH
Confidence 34789997 8999999887764 5666788888777764 4456765 6899999997 37789999999
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEEE
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLII 256 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklIi 256 (385)
..++.+|+++||.|+...+.|.+-. ..++..+.. .+.|. +.|+++||+++++. ++++|+
T Consensus 113 ~~~i~~l~~~~dli~~D~lnHASii--------dG~rls~a~--~~~f~------HnD~~~Le~~l~~~~~~~~~~~~Iv 176 (388)
T COG0156 113 LGLLSALLKKGDLIFSDELNHASII--------DGIRLSRAE--VRRFK------HNDLDHLEALLEEARENGARRKLIV 176 (388)
T ss_pred HHHHHHhcCCCcEEEEechhhhhHH--------HHHHhCCCc--EEEec------CCCHHHHHHHHHhhhccCCCceEEE
Confidence 9999999999999999887654311 234555553 34443 46999999999762 246777
Q ss_pred EcC--CCCCCCCCHHHHHHHHHHcCcEEEEecccccccccc-Cc-ccCC--CC--CCcEEEECCCccCccccEEEEEEeC
Q 016668 257 AGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VADP--FK--YCDVVTTTTHKSLRGPRGGMIFFKK 328 (385)
Q Consensus 257 ~~~--s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~-~~~p--~~--gaDiv~~S~hK~l~GprgG~I~~~~ 328 (385)
++. |..|...|+++|++++++||++|++|+||+.|+... |. ...- +. ..||+++|+.|.| |--||++.++.
T Consensus 177 tegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAl-Gs~Gg~v~g~~ 255 (388)
T COG0156 177 TEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKAL-GSSGGYIAGSA 255 (388)
T ss_pred EeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhh-cccCceeeCcH
Confidence 753 455677899999999999999999999999998763 21 1111 11 3489999999998 46889999988
Q ss_pred CCCchhHHHHHHhhccCCCccCC-ChHHHHHHHHHHHHHhh
Q 016668 329 DPVLGVELESAINNAVFPGLQGG-PHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~fp~~qg~-p~~~~iaala~Al~e~~ 368 (385)
.+.+.+.....+.+.++ ..+...++...+++.+.
T Consensus 256 ------~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~ 290 (388)
T COG0156 256 ------ALIDYLRNRARPFIFSTALPPAVAAAALAALRILE 290 (388)
T ss_pred ------HHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHH
Confidence 68888776666666654 44455556666777664
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-18 Score=168.09 Aligned_cols=234 Identities=16% Similarity=0.220 Sum_probs=157.8
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC-CCCCCcceeecCCc-HHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSG-SPANFEVYT 186 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~-~~~~~~~~V~~~sG-s~A~~~a~~ 186 (385)
+...++++.|++++...+.+.+ ++|++.+..+......+++ +++.+.+.+|+ +++ +|.+++| ++++..++.
T Consensus 6 aa~~~~~~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~----~i~~t~g~teal~~~~~ 78 (382)
T TIGR03403 6 NATTMLDPKVKELMDPFFCDIY--GNPNSLHQFGTATHPAIAE-ALDKLYKGINARDLD----DIIITSCATESNNWVLK 78 (382)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--cCCccccHHHHHHHHHHHH-HHHHHHHHcCcCCCC----eEEEeCCHHHHHHHHHH
Confidence 4567788999999988877655 3555433334455556766 45566777887 343 4555555 569888888
Q ss_pred Hhc-----cC-CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 187 AIL-----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 187 all-----~p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
++. ++ ||+|++.+.+|.++.... ..+...|..+..++ ++ +++.+|++++++.+++ ++++|++..+
T Consensus 79 ~~~~~~~~~~~~~~vi~~~~e~ps~~~~~-----~~~~~~G~~v~~v~--~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~ 149 (382)
T TIGR03403 79 GVYFDEILKGGKNHIITTEVEHPAVRATC-----AFLESLGVEVTYLP--IN-EQGTITAEQVREAITE-KTALVSVMWA 149 (382)
T ss_pred HHHHhhcccCCCCEEEEcCCccHHHHHHH-----HHHHHCCCEEEEEe--cC-CCCCCCHHHHHHhccc-CCeEEEEEcc
Confidence 762 56 478999887765543211 12334566555555 44 3578999999999865 6888888765
Q ss_pred CC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC-C-CCcEEEECCCccCccccE-EEEEEeCCCCchhH
Q 016668 261 AY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVE 335 (385)
Q Consensus 261 ~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~-~-gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~ 335 (385)
++ |...|+++|.++|+++|+++++|++|..|.. +..+ + ++|++++|+||+ .||.| |+++.+++. .
T Consensus 150 ~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~-----~~~~~~~~~D~~~~s~~K~-~gp~G~g~l~vr~~~----~ 219 (382)
T TIGR03403 150 NNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI-----PVDVQKAGVDFLSFSAHKF-HGPKGVGGLYIRKGV----E 219 (382)
T ss_pred cCCCccccCHHHHHHHHHHcCCEEEEechhhcCCC-----ccCccccCCCEEEEcchhh-CCCCceEEEEECCCC----C
Confidence 54 4678999999999999999999999976643 2222 2 799999999996 58887 888877752 1
Q ss_pred HHHHHh--hccCCCccCCChHHHHHHHHHHHHHhh
Q 016668 336 LESAIN--NAVFPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 336 ~~~~i~--~~~fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
+...+. ........|+++...+.+++.|++...
T Consensus 220 ~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~ 254 (382)
T TIGR03403 220 LTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLAN 254 (382)
T ss_pred CCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHH
Confidence 111110 001111246788888989999987653
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=163.87 Aligned_cols=230 Identities=20% Similarity=0.194 Sum_probs=151.0
Q ss_pred cccccCCC---CCcHHHHHHHhhHhhccCCCCCCCCCCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHH
Q 016668 105 LELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (385)
Q Consensus 105 l~Liasen---~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~-~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A 180 (385)
|++...+. ..++.+++++...+. +|..++++.++..|. +..++ .++.+++++|.+. .+.+++|+.+
T Consensus 19 id~~~~~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~----l~~~la~~~~~~~-----~i~~~~G~~~ 88 (360)
T TIGR00858 19 LNFSSNDYLGLASHPEVIQAAQQGAE-QYGAGSTASRLVSGNSPLHEE----LEEELAEWKGTEA-----ALLFSSGYLA 88 (360)
T ss_pred EecccCCcccCCCCHHHHHHHHHHHH-hcCCCCCCcCcccCCcHHHHH----HHHHHHHHhCCCC-----EEEECchHHH
Confidence 45544432 245899999987764 454455544333343 32333 4456788888643 5778899988
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc---CCcEEEE
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIA 257 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~---~pklIi~ 257 (385)
+..++.++++|||+|++.++.|.++.. .+...|..+..++ .+|++++++.++.. ++++|++
T Consensus 89 ~~~~l~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~~~~~~~--------~~d~~~l~~~~~~~~~~~~~~v~~ 152 (360)
T TIGR00858 89 NVGVISALVGKGDLILSDALNHASLID--------GCRLSGARVRRYR--------HNDVEHLERLLEKNRGERRKLIVT 152 (360)
T ss_pred HHHHHHHhCCCCCEEEEEccccHHHHH--------HHHhcCCceEEec--------CCCHHHHHHHHHHcccCCCeEEEE
Confidence 888888889999999998876654321 2344555433322 36899999988652 4678887
Q ss_pred cCCCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccC-c--cc-CCCC--CCcEEEECCCccCccccEEEEEEeCC
Q 016668 258 GASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS-V--VA-DPFK--YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (385)
Q Consensus 258 ~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g-~--~~-~p~~--gaDiv~~S~hK~l~GprgG~I~~~~~ 329 (385)
+..++ +...|+++|.++|+++|+++++|++|..|..... . .+ ..++ +.|++++|+||+| |++||++++++
T Consensus 153 ~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~gG~~~~~~- 230 (360)
T TIGR00858 153 DGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKAL-GSYGAYVAGSQ- 230 (360)
T ss_pred eCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhh-hccCcEEEcCH-
Confidence 76544 4467999999999999999999999976643211 1 00 1121 5678999999988 45889998876
Q ss_pred CCchhHHHHHHhhccCCC-ccCCChHHHHHHHHHHHHHh
Q 016668 330 PVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 330 ~~~~~~~~~~i~~~~fp~-~qg~p~~~~iaala~Al~e~ 367 (385)
++.+.+.....+. ..++++...+++...+++..
T Consensus 231 -----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 264 (360)
T TIGR00858 231 -----ALIDYLINRARTLIFSTALPPAVAAAALAALELI 264 (360)
T ss_pred -----HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH
Confidence 5666665433332 23345556666666677643
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=165.78 Aligned_cols=210 Identities=19% Similarity=0.136 Sum_probs=137.9
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCE
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDR 194 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~ 194 (385)
+|.+.++....+. +|. |+. ++.+..++++++++|++.++ .+.+++|+.||..++.++++|||+
T Consensus 35 ~~~~~~~~~~~~~-~~~----------g~~---~~~~~Le~~lA~~~g~~~e~---ilv~~gg~~a~~~~~~al~~~gd~ 97 (346)
T TIGR03576 35 GFKIDEEDLELLE-TYV----------GPA---IFEEKVQELGREHLGGPEEK---ILVFNRTSSAILATILALEPPGRK 97 (346)
T ss_pred ChhHHHHHHHHHH-Hhc----------CCH---HHHHHHHHHHHHHcCCCcce---EEEECCHHHHHHHHHHHhCCCCCE
Confidence 7888888766543 341 222 34444556799999996531 355667788999999999999999
Q ss_pred EeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCC---CCHHH
Q 016668 195 IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRD---FDYPR 270 (385)
Q Consensus 195 Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~~~---~dl~~ 270 (385)
|+++.++...|.++. ..+.+.|..+ +. . .|+++++. . .++++|++..++ .+.. .|+++
T Consensus 98 Vli~~~d~p~~~s~~-----~~~~l~ga~~--~~--~------~~l~~l~~-~--~~~~lIiitg~s~~G~v~~~~~L~~ 159 (346)
T TIGR03576 98 VVHYLPEKPAHPSIP-----RSCKLAGAEY--FE--S------DELSELKK-I--DGTSLVVITGSTMDLKVVSEEDLKR 159 (346)
T ss_pred EEECCCCCCCchhHH-----HHHHHcCCEE--ec--c------CCHHHHhh-C--cCceEEEEECCCCCCcccCHHHHHH
Confidence 998655444554432 1344556532 22 1 24555433 2 257877764433 2333 57899
Q ss_pred HHHHHHHcCcEEEEeccccccccc-cCcccCCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhccCCCc
Q 016668 271 MRQIADAVGALLMMDMAHISGLVA-ASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL 348 (385)
Q Consensus 271 I~~ia~~~ga~livD~ah~~Gli~-~g~~~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~ 348 (385)
|+++|+++|++|++|++|..|... .+.. .... +.|++++|+||+|+|+|+|++++++ ++.+.+.....+..
T Consensus 160 i~~la~~~~~~livDEAy~~~~~~~~~~~-~~~~~~~divv~s~SKalaG~r~G~v~~~~------~li~~l~~~~~~~~ 232 (346)
T TIGR03576 160 VIKQAKSKEAIVLVDDASGARVRRLYGQP-PALDLGADLVVTSTDKLMDGPRGGLLAGRK------ELVDKIKSVGEQFG 232 (346)
T ss_pred HHHHHHHcCCEEEEECCccccccccCCCC-CHHHcCCcEEEeccchhccccceEEEEeCH------HHHHHHHHhhcCcc
Confidence 999999999999999999876532 1211 1122 5789999999999999999999988 67777776655544
Q ss_pred cCCChHHHHHHHHHHHHHh
Q 016668 349 QGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 349 qg~p~~~~iaala~Al~e~ 367 (385)
.+.+.. ..++...+|+..
T Consensus 233 ~s~~~~-~~~aa~~aL~~~ 250 (346)
T TIGR03576 233 LEAQAP-LLAAVVRALEEF 250 (346)
T ss_pred cCccHH-HHHHHHHHHhhc
Confidence 433333 455556677653
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=163.99 Aligned_cols=206 Identities=13% Similarity=0.099 Sum_probs=141.2
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCC-CC---CCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RY---YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~-r~---~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A 180 (385)
++-|-+.-++.+.+++++.....+ + +.+.. .. ..+.+.+.++ ++.+++++|++. .+.+.++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l----~~~la~~~g~~~-----i~~~~g~t~a 71 (361)
T cd06452 4 IDPIQRGGRLTPEARKALIEWGDG-Y--SVCDFCRGRLDEIEKPPIKDF----HHDLAEFLGMDE-----ARVTPGAREG 71 (361)
T ss_pred CChhhcCCCCCHHHHHHHHHHhcc-c--CCccccccccccccCchHHHH----HHHHHHHcCCce-----EEEeCCHHHH
Confidence 445667888899999998866521 1 22211 00 1122333444 456889999943 2444556679
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhh------cCCc
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAIL------FRPK 253 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~------~~pk 253 (385)
+..++.++++|||+|++.++.|.+.. ..+...|..+..++ .+.+ ++.+|++++++.+++ .+++
T Consensus 72 l~~~l~~~~~~gd~Vl~~~~~~~~~~--------~~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 141 (361)
T cd06452 72 KFAVMHSLCEKGDWVVVDGLAHYTSY--------VAAERAGLNVREVP--NTGHPEYHITPEGYAEVIEEVKDEFGKPPA 141 (361)
T ss_pred HHHHHHHhcCCCCEEEEcCCcchHHH--------HHHHhcCCEEEEEe--cCCCCCcccCHHHHHHHHHHHhhccCCCce
Confidence 99999999999999999876543321 12445676555555 4432 348999999998853 2678
Q ss_pred EEEEcCCCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCcc-ccEEEEEEeCC
Q 016668 254 LIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKD 329 (385)
Q Consensus 254 lIi~~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~G-prgG~I~~~~~ 329 (385)
+|+++.+++ +...|+++|.++|+++|+++++|++|+.|... ....+ ++|++++|+||+|.+ +++|++++++
T Consensus 142 lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~----~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~- 216 (361)
T cd06452 142 LALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMP----VSGKELGADFIVGSGHKSMAASAPIGVLATTE- 216 (361)
T ss_pred EEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcC----CCHHHcCCCEEEecCCccccCCCCeEEEEECH-
Confidence 988877655 46789999999999999999999999765321 11122 689999999999854 4679999887
Q ss_pred CCchhHHHHHHhh
Q 016668 330 PVLGVELESAINN 342 (385)
Q Consensus 330 ~~~~~~~~~~i~~ 342 (385)
++.+++..
T Consensus 217 -----~~~~~l~~ 224 (361)
T cd06452 217 -----EWADIVFR 224 (361)
T ss_pred -----HHHHHHhc
Confidence 56666644
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-17 Score=164.06 Aligned_cols=237 Identities=14% Similarity=0.070 Sum_probs=155.2
Q ss_pred hhhcccCChHHHHHHHHHHHHh----hhccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQ----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~----~~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~ 153 (385)
+.+++.+.+..+..+.+...+. ..-++|-.+++ .+++.+++++.+.+.+.. .+|+. ..|.+ ++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~Y~~---~~g~~---~lr~~i 78 (387)
T PRK08960 6 SRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGH-TRYTA---ARGLP---ALREAI 78 (387)
T ss_pred hhHHHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CccCC---CCCCH---HHHHHH
Confidence 4556666676565554443332 13355554433 468999999988776421 13332 12443 677777
Q ss_pred HHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
++++.+.+|.+.+ . -+|.+++| ++|+..++.++++|||+|++.+|.|.++.. .+...|..+..++ ++
T Consensus 79 a~~~~~~~g~~~~-~-~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~~~~~v~--~~ 146 (387)
T PRK08960 79 AGFYAQRYGVDVD-P-ERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRH--------FLRLVEGAAQLVP--VG 146 (387)
T ss_pred HHHHHHHhCCCCC-h-hhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCCeEEEEe--cC
Confidence 7777777675421 1 14556665 569999999999999999999997765432 2345566555555 44
Q ss_pred CC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CC
Q 016668 233 ES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC 305 (385)
Q Consensus 233 ~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-ga 305 (385)
.+ ++.+|++++++.+++ +++++++..++|| ...+ +++|+++|+++|+++++|+++ .++...+..++.+. ..
T Consensus 147 ~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y-~~~~~~~~~~~~~~~~~ 224 (387)
T PRK08960 147 PDSRYQLTPALVERHWNA-DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIY-HGLTYGVDAASVLEVDD 224 (387)
T ss_pred cccCCCCCHHHHHHHhCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccc-cccccCCCCCChhhccC
Confidence 33 347999999998865 5777777777776 3444 567778899999999999996 45554332222233 23
Q ss_pred c-EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 306 D-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 306 D-iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+ +++.|++|.+ +|.|.|++++++ ++.+.+...
T Consensus 225 ~vi~~~S~SK~~g~~GlRiG~~~~~~------~~~~~~~~~ 259 (387)
T PRK08960 225 DAFVLNSFSKYFGMTGWRLGWLVAPP------AAVPELEKL 259 (387)
T ss_pred CEEEEeecccccCCcccEEEEEEcCH------HHHHHHHHH
Confidence 4 6789999987 788999999987 566666543
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=165.44 Aligned_cols=240 Identities=13% Similarity=0.050 Sum_probs=161.4
Q ss_pred ccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHH
Q 016668 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (385)
Q Consensus 106 ~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~ 185 (385)
-++|....+++.|++++.... .. .+.++.+.++ .+++.+++++|++++. .+.+.+.|||.|+..++
T Consensus 8 ~~~pgP~~~~~~~~~a~~~~~-~~-----------~~~~~~~~~~-~~~~~l~~l~~~~~~~-~~i~~~~~gt~~l~~~~ 73 (368)
T PRK13479 8 LLTPGPLTTSRTVREAMLRDW-GS-----------WDDDFNALTA-SVRAKLVAIATGEEGY-TCVPLQGSGTFSVEAAI 73 (368)
T ss_pred eecCCCCCCCHHHHHHhCCCC-CC-----------CChHHHHHHH-HHHHHHHHHhCCCCCc-eEEEEcCCcHHHHHHHH
Confidence 467888899999999987543 11 1223444444 4788899999996421 12345668899999999
Q ss_pred HHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-CCcEEEEcCCC--C
Q 016668 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASA--Y 262 (385)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-~pklIi~~~s~--~ 262 (385)
.++..+||+|++.++. ++.+.+ ...+...|..+..++ .+ +++.+|++++++.++.. ++++|++..++ +
T Consensus 74 ~~l~~~~~~vlv~~~~---~~~~~~---~~~~~~~g~~~~~i~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~t 144 (368)
T PRK13479 74 GSLVPRDGKVLVPDNG---AYGARI---AQIAEYLGIAHVVLD--TG-EDEPPDAAEVEAALAADPRITHVALVHCETTT 144 (368)
T ss_pred HhccCCCCeEEEEeCC---chHHHH---HHHHHHcCCcEEEEE--CC-CCCCCCHHHHHHHHHhCCCCcEEEEEcccCcc
Confidence 9999999999987642 221110 012345676666665 33 24579999999988642 35667666554 4
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~ 339 (385)
+...|+++|.++|+++|+++++|++|..|.. +.++. ++|++++|+||++.||.| |+++.++ ++.++
T Consensus 145 G~~~~~~~i~~l~~~~~~~livDa~~~~g~~-----~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~------~~~~~ 213 (368)
T PRK13479 145 GILNPLDEIAAVAKRHGKRLIVDAMSSFGAI-----PIDIAELGIDALISSANKCIEGVPGFGFVIARR------SELEA 213 (368)
T ss_pred ccccCHHHHHHHHHHcCCEEEEEcccccCCc-----cccccccCceEEEecCccccccCCCceEEEECH------HHHHH
Confidence 5778999999999999999999988865532 22233 689999999999988877 9999887 34444
Q ss_pred HhhccCC----------------CccCCChHHHHHHHHHHHHHhhCch-HHHHHHHH
Q 016668 340 INNAVFP----------------GLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQNKS 379 (385)
Q Consensus 340 i~~~~fp----------------~~qg~p~~~~iaala~Al~e~~~~~-~~~y~~~v 379 (385)
+.....+ ....+++...++++..+++.+.+++ +++..+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~ 270 (368)
T PRK13479 214 CKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARY 270 (368)
T ss_pred hhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4322111 0011567778889999998776554 34433333
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-17 Score=164.51 Aligned_cols=237 Identities=16% Similarity=0.181 Sum_probs=156.7
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccccC--CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Lias--en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
.++..+.+.++..+.+.. .+...++|-.+ +..+++.+.+++...+.... ..|+. ..|.+ ++++.++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~G~~---~lr~~ia~~l~ 80 (384)
T PRK12414 9 SKLPDVGTTIFTVIGQLA-AQHDALNLSQGAPNFAPDPALVEGVARAMRDGH-NQYAP---MAGIA---ALREALAEKTE 80 (384)
T ss_pred HhcccCCccHHHHHHHHH-HhCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCC-CCcCC---CCCcH---HHHHHHHHHHH
Confidence 445555566666554432 23344666543 33458888888876654321 23432 22443 77777888999
Q ss_pred HHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCC
Q 016668 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~i 238 (385)
+++|++.+...-.+.+.+|+.|+..++.++++|||+|++.+|.|.++.. .+...|..+. +++++++++.+
T Consensus 81 ~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~--~v~~~~~~~~~ 150 (384)
T PRK12414 81 RLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAP--------IVRLQGATPV--AIKLSPEDFRV 150 (384)
T ss_pred HHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHH--------HHHHcCCEEE--EEecCcccccc
Confidence 9999863110012334445579999999999999999999987654311 2345566444 44455445689
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCC--C---CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CC-Cc--E
Q 016668 239 DYDMLEKTAILFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY-CD--V 307 (385)
Q Consensus 239 D~d~le~~i~~~~pklIi~~~s~~~~--~---~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~g-aD--i 307 (385)
|++++++.++. ++|+|+++.++||+ . .++++|.++|+++|+++++|+++. .+.+.+....++ .. .| +
T Consensus 151 d~~~l~~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~~~i 228 (384)
T PRK12414 151 NWDEVAAAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYE-HVVFDGARHHSMARHRELAERSV 228 (384)
T ss_pred CHHHHHhhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhh-hccCCCCCccCcccCcCccCcEE
Confidence 99999998864 78999888788773 2 358899999999999999999974 444443222122 11 22 7
Q ss_pred EEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 308 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 308 v~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
++.|++|+| +|.|.|++++++ ++.+.+...
T Consensus 229 ~~~SfSK~~~~pGlRiG~~v~~~------~l~~~l~~~ 260 (384)
T PRK12414 229 IVSSFGKSYHVTGWRVGYCLAPA------ELMDEIRKV 260 (384)
T ss_pred EEecccccccCccceEEEEecCH------HHHHHHHHH
Confidence 899999987 788999999987 566666543
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=164.53 Aligned_cols=266 Identities=18% Similarity=0.180 Sum_probs=167.1
Q ss_pred ChHHHHHHHHHHHHhh--hccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 016668 87 DPEVCEIITKEKERQF--KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD 164 (385)
Q Consensus 87 dp~~~~~i~~e~~~~~--~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~ 164 (385)
+.++++.+.+..+.-. ..+ +-...+++.|.+.+++...+.... +.+. .+.+. .++++.+++++++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~--~~~~--~~~~~---~~~~~~~~~~la~~~g~~ 75 (371)
T PRK13520 4 EEEILEELEEYRSEDLKYERI-LSSMCTEPHPIARKAHEMFLETNL--GDPG--LFPGT---AKLEEEAVEMLGELLHLP 75 (371)
T ss_pred HHHHHHHHHHHHhcCCCHHHe-eeeeecCchHHHHHHHHHHHhcCC--CCcc--cCccH---HHHHHHHHHHHHHHhCCC
Confidence 3456666555433321 212 334467778998999887665422 3332 23332 245566888999999987
Q ss_pred CCCCcceeecCCcHHHHHHHHHHhcc----CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCH
Q 016668 165 ENKWGVNVQPLSGSPANFEVYTAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (385)
Q Consensus 165 ~~~~~~~V~~~sGs~A~~~a~~all~----pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~ 240 (385)
.. ..+.+.+|+.||..++.++.+ +||+|++.++. |.++. +.+...|..+..++ .+ +++.+|+
T Consensus 76 ~~---~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~---h~s~~-----~~~~~~g~~~~~v~--~~-~~~~~d~ 141 (371)
T PRK13520 76 DA---YGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESA---HFSFD-----KAADMLGVELRRAP--LD-DDYRVDV 141 (371)
T ss_pred CC---CeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcc---hHHHH-----HHHHHcCceEEEec--CC-CCCcCCH
Confidence 63 235567788899988877643 68999998864 43321 13345676666555 33 3568999
Q ss_pred HHHHHHhhhcCCcEEEEcC--CCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCC--CCCcEEEECCCc
Q 016668 241 DMLEKTAILFRPKLIIAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF--KYCDVVTTTTHK 314 (385)
Q Consensus 241 d~le~~i~~~~pklIi~~~--s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~--~gaDiv~~S~hK 314 (385)
++|++.+++ ++++|++.. +.+|...|+++|.++|+++|+++++|++|+.+........ ..+ .++|.+++|+||
T Consensus 142 ~~l~~~i~~-~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K 220 (371)
T PRK13520 142 KAVEDLIDD-NTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHK 220 (371)
T ss_pred HHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCcc
Confidence 999999965 566555332 3467888999999999999999999999975532111111 112 278999999999
Q ss_pred cCccc-cEEEEEEeCCCCchhHHHHHHhhccCCCc--------cCCChHHHHHHHHHHHHHhhCchHHHHHHHHhc
Q 016668 315 SLRGP-RGGMIFFKKDPVLGVELESAINNAVFPGL--------QGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSAC 381 (385)
Q Consensus 315 ~l~Gp-rgG~I~~~~~~~~~~~~~~~i~~~~fp~~--------qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~ 381 (385)
++.+| ++|+++..++ ++.+.+... .+.. .|++....++++..+++.+...+++++.++..+
T Consensus 221 ~~~a~~~~G~~~~~~~-----~~~~~l~~~-~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~ 290 (371)
T PRK13520 221 MGLAPIPAGGILFRDE-----SYLDALAVD-TPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCME 290 (371)
T ss_pred ccCccCCceEEEEcCH-----HHHHhhccc-CccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHH
Confidence 86443 4566665553 455555321 1211 233444557777778877666666666655544
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=168.96 Aligned_cols=233 Identities=18% Similarity=0.228 Sum_probs=153.4
Q ss_pred cCCCCCcHHHHHHHhhHhh--ccCCCCCCCCCCC-CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLT--NKYSEGLPGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~--~~y~~g~p~~r~~-~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~ 185 (385)
++..++++.|++++...+. +.+ +.++.+.. .+....+.++ .+++++++++|+++++ .+.+.+||.|+..++
T Consensus 10 a~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~r~~ia~~~g~~~~~---v~~~~g~t~al~~~l 83 (404)
T PRK14012 10 SATTPVDPRVAEKMMPYLTMDGTF--GNPASRSHRFGWQAEEAVD-IARNQIADLIGADPRE---IVFTSGATESDNLAI 83 (404)
T ss_pred cCCCCCCHHHHHHHHHHHHhcccC--cCCCchhhHHHHHHHHHHH-HHHHHHHHHcCcCcCe---EEEeCCHHHHHHHHH
Confidence 5566889999999988775 444 33432111 1111112333 4677899999998742 345566778988888
Q ss_pred HHh----ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 186 TAI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 186 ~al----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
.++ +++||+|++.+++|.+.... +..+...|..+..++ ++ .++.+|+++|++.+++ ++++|++...+
T Consensus 84 ~~l~~~~~~~gd~Vi~~~~~~~s~~~~-----~~~~~~~g~~~~~v~--~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~~ 154 (404)
T PRK14012 84 KGAAHFYQKKGKHIITSKTEHKAVLDT-----CRQLEREGFEVTYLD--PQ-SNGIIDLEKLEAAMRD-DTILVSIMHVN 154 (404)
T ss_pred HHHHHhhcCCCCEEEEecCccHHHHHH-----HHHHHhCCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CCEEEEEECcC
Confidence 776 37999999988766443221 112223466555554 44 3678999999999965 78888776554
Q ss_pred --CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHH
Q 016668 262 --YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 336 (385)
Q Consensus 262 --~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~ 336 (385)
+|...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||. .||.| |+++.+++. .
T Consensus 155 n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~-----~~~~~~~~~D~~~~s~~K~-~gp~g~G~l~~~~~~-----~ 223 (404)
T PRK14012 155 NEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKV-----PIDLSKLKVDLMSFSAHKI-YGPKGIGALYVRRKP-----R 223 (404)
T ss_pred CCccchhhHHHHHHHHHHcCCEEEEEcchhcCCc-----ccCcccCCCCEEEEehhhc-cCCCceEEEEEecCC-----C
Confidence 46778999999999999999999999977643 21222 689999999995 47766 777777642 1
Q ss_pred HHHHhhcc------CCCccCCChHHHHHHHHHHHHHhh
Q 016668 337 ESAINNAV------FPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 337 ~~~i~~~~------fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
.++.... .....|+++...+.++..|++.+.
T Consensus 224 -~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~ 260 (404)
T PRK14012 224 -VRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAK 260 (404)
T ss_pred -CCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHH
Confidence 1111100 001235677788888888876553
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=164.40 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=145.1
Q ss_pred hccccccCC--CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceeecCC-c
Q 016668 103 KSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLS-G 177 (385)
Q Consensus 103 ~~l~Liase--n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg--~~~~~~~~~V~~~s-G 177 (385)
.-++|-..+ ..+++.+++++...+.+.. .+|+. ..|.+ ++++..++++.+.+| ++.+ +|.+++ +
T Consensus 25 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~G~~---~lr~~la~~~~~~~~~~~~~~----~i~~t~g~ 93 (382)
T PRK06108 25 GVLPLWFGESDLPTPDFIRDAAAAALADGE-TFYTH---NLGIP---ELREALARYVSRLHGVATPPE----RIAVTSSG 93 (382)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCCH---HHHHHHHHHHHHHhCCCcCcc----eEEEeCCh
Confidence 335555433 4558899999887765421 23433 23444 788888888988888 5443 344544 5
Q ss_pred HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEE
Q 016668 178 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA 257 (385)
Q Consensus 178 s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~ 257 (385)
+.|+..++.++++|||+|++.+|.|..+.. .+...|..+..++++.+.+++.+|++++++.++. ++|+|++
T Consensus 94 ~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l 164 (382)
T PRK06108 94 VQALMLAAQALVGPGDEVVAVTPLWPNLVA--------APKILGARVVCVPLDFGGGGWTLDLDRLLAAITP-RTRALFI 164 (382)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccchHH--------HHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc-cceEEEE
Confidence 669999999999999999999987654321 3345676655555432223457999999998854 7888888
Q ss_pred cCCCCCC--CC---CHHHHHHHHHHcCcEEEEecccccccccc-C-cccCCCC----C-CcEEEECCCccC--ccccEEE
Q 016668 258 GASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA-S-VVADPFK----Y-CDVVTTTTHKSL--RGPRGGM 323 (385)
Q Consensus 258 ~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~-g-~~~~p~~----g-aDiv~~S~hK~l--~GprgG~ 323 (385)
+.++||+ .. ++++|.++|+++|+++++|++|. ++... + ..++.++ + ..+++.|+||++ +|.|.|+
T Consensus 165 ~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~ 243 (382)
T PRK06108 165 NSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYE-RLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGW 243 (382)
T ss_pred ECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhh-hhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceee
Confidence 7777763 33 47889999999999999999974 44433 1 1222121 1 237899999986 6788999
Q ss_pred EEEeCCCCchhHHHHHHhhc
Q 016668 324 IFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~~ 343 (385)
+++++ ++.+++...
T Consensus 244 ~~~~~------~~~~~~~~~ 257 (382)
T PRK06108 244 LVAPP------ALGQVLEKL 257 (382)
T ss_pred eeCCH------HHHHHHHHH
Confidence 99987 566666543
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=164.68 Aligned_cols=169 Identities=20% Similarity=0.196 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcc
Q 016668 144 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (385)
Q Consensus 144 ~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (385)
+...++|+ .+++++|.+. .+.++|||.|+..++.++ ++|||+|+++.+.|.+.. ..+...|.
T Consensus 18 ~~~~~~~~----~la~~~~~~~-----~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~--------~~~~~~g~ 80 (352)
T cd00616 18 PKVREFEK----AFAEYLGVKY-----AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATA--------NAILLLGA 80 (352)
T ss_pred HHHHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH--------HHHHHcCC
Confidence 33445554 6889999754 466789999999999998 799999999987654321 13345565
Q ss_pred eEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC
Q 016668 223 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF 302 (385)
Q Consensus 223 ~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~ 302 (385)
.+ +.++++++++.+|++++++.+++ ++++|++.. .+|...|+++|.++|+++|+++++|++|+.|....+. ++
T Consensus 81 ~~--~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~---~~ 153 (352)
T cd00616 81 TP--VFVDIDPDTYNIDPELIEAAITP-RTKAIIPVH-LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGR---KV 153 (352)
T ss_pred eE--EEEecCCCcCCcCHHHHHHhcCc-CCeEEEEEC-CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCE---Ec
Confidence 44 44456644678999999998854 789888754 4677889999999999999999999999887654332 22
Q ss_pred C-CCcEEEECCC--ccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 303 K-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 303 ~-gaDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
. .+|+.++|+| |+++++.||+++++++ ++.+++.
T Consensus 154 ~~~~d~~~~S~~~~K~~~~~~gg~~~~~~~-----~~~~~~~ 190 (352)
T cd00616 154 GTFGDAGAFSFHPTKNLTTGEGGAVVTNDE-----ELAERAR 190 (352)
T ss_pred ccCcceeEEcCCCCCCCcccCceEEEECCH-----HHHHHHH
Confidence 2 4688888876 9998889999998865 5655554
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-18 Score=165.45 Aligned_cols=202 Identities=18% Similarity=0.189 Sum_probs=132.9
Q ss_pred cCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHH
Q 016668 109 ASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (385)
Q Consensus 109 asen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~ 186 (385)
.+||+ +++.+++++...... . . + |+..+..+++ ++++++++| +. ..+.+.+|+.|+..++.
T Consensus 3 ~~~~~~~~~~~v~~a~~~~~~~-~----~--~-~~~~~~~~~l----~~~~a~~~g-~~----~~~~~~~gt~a~~~~~~ 65 (338)
T cd06502 3 RSDTVTGPTPEMLEAMAAANVG-D----D--V-YGEDPTTAKL----EARAAELFG-KE----AALFVPSGTAANQLALA 65 (338)
T ss_pred ccccCCCCCHHHHHHHHhcccC-C----c--c-cCCCHHHHHH----HHHHHHHhC-CC----eEEEecCchHHHHHHHH
Confidence 45555 488999998764321 1 1 1 2222333344 457889999 33 25677889999999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh------cCCcEEEEcCC
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------FRPKLIIAGAS 260 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~------~~pklIi~~~s 260 (385)
++++|||+|++.++.|.++.... ......|..+..++ .+ ++.+|++++++++++ .++++|+++.+
T Consensus 66 ~l~~~gd~v~~~~~~~~~~~~~~-----~~~~~~g~~~~~v~--~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p 136 (338)
T cd06502 66 AHTQPGGSVICHETAHIYTDEAG-----APEFLSGVKLLPVP--GE--NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENT 136 (338)
T ss_pred HhcCCCCeEEEecCcceeeecCC-----cHHHHcCceEEeec--CC--CCcCCHHHHHHHhhccCCCcCCcceEEEEEee
Confidence 99999999999888664432110 01223565444443 43 367999999999864 26788888766
Q ss_pred CCC-C---CCCHHHHHHHHHHcCcEEEEecccccccc-ccCcccCCC-CCCcEEEECCCccCccccEEEEEEeCCCCchh
Q 016668 261 AYP-R---DFDYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV 334 (385)
Q Consensus 261 ~~~-~---~~dl~~I~~ia~~~ga~livD~ah~~Gli-~~g~~~~p~-~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~ 334 (385)
+++ . ..|+++|+++|+++|+++++|++|..+.. ..+...... .++|+++.|+||++..|.|++++.++
T Consensus 137 ~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~------ 210 (338)
T cd06502 137 TEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNR------ 210 (338)
T ss_pred cCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCH------
Confidence 554 2 24578899999999999999999854422 122111112 26899999999999777666555555
Q ss_pred HHHHHHhh
Q 016668 335 ELESAINN 342 (385)
Q Consensus 335 ~~~~~i~~ 342 (385)
++.+++..
T Consensus 211 ~~~~~~~~ 218 (338)
T cd06502 211 DFIARARR 218 (338)
T ss_pred HHHHHHHH
Confidence 56666654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=168.77 Aligned_cols=214 Identities=17% Similarity=0.207 Sum_probs=146.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccccccccc
Q 016668 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG 219 (385)
Q Consensus 140 ~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~ 219 (385)
|+|.+.+.+||+ .++++||.++ .|.++||+.|+..++...++|||.| +.. .|+... ...+..
T Consensus 74 Yagd~s~~~LE~----~vAe~lG~e~-----aV~v~sGTaAl~ll~~l~v~pGd~V--p~n---~~f~Tt----~ahI~~ 135 (460)
T PRK13237 74 YAGSRNFYHLEE----TVQEYYGFKH-----VVPTHQGRGAENLLSRIAIKPGQYV--PGN---MYFTTT----RYHQEL 135 (460)
T ss_pred hcCCCcHHHHHH----HHHHHHCCCe-----EEEeCCHHHHHHHHHHhCCCCcCEE--CCc---cchHhh----HHHHHh
Confidence 556666778886 5788999987 4778899999998766568999976 221 122110 011334
Q ss_pred CcceEEEEe-------ccccCCCCCCCHHHHHHHhhhcCC------cEEEEcCCCCCCC---CCHHHHHHHHHHcCcEEE
Q 016668 220 TSIYFESMP-------YRLDESTGLVDYDMLEKTAILFRP------KLIIAGASAYPRD---FDYPRMRQIADAVGALLM 283 (385)
Q Consensus 220 ~g~~~~~i~-------~~~~~~~~~iD~d~le~~i~~~~p------klIi~~~s~~~~~---~dl~~I~~ia~~~ga~li 283 (385)
.|..+.-+. -..++.++.+|+++|++.+++..+ ++++..+..-|.+ .++++|.++|+++|+.|+
T Consensus 136 ~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi 215 (460)
T PRK13237 136 NGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVF 215 (460)
T ss_pred CCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEE
Confidence 444221111 012345789999999999975322 2333322221333 378999999999999999
Q ss_pred Eecccccc---ccc---cCcccCC--------CCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhc--cCCC
Q 016668 284 MDMAHISG---LVA---ASVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA--VFPG 347 (385)
Q Consensus 284 vD~ah~~G---li~---~g~~~~p--------~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~--~fp~ 347 (385)
.|+||..| ++- .+....+ +.++|.+++|+||.+.++.||+|+++++ ++.++++.. .|+|
T Consensus 216 ~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D~-----eL~~~~r~~~~~~eG 290 (460)
T PRK13237 216 FDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMNDE-----ELFDEAKELVVVYEG 290 (460)
T ss_pred EECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECCH-----HHHHHHHHhccccCC
Confidence 99999988 441 1111122 2379999999999999999999999997 899998877 6777
Q ss_pred cc--CCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 348 LQ--GGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 348 ~q--g~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
+. |+..-..+.|+|++|.|...++|.+|+
T Consensus 291 ~~tygg~~grd~~alAvgl~E~~~~~y~~~r 321 (460)
T PRK13237 291 MPSYGGMAGRDMEAMAIGIEESVQYEYIEHR 321 (460)
T ss_pred CcCCCChhhhHHHHHHhHHHhhchHHHHHHH
Confidence 54 445456899999999999887664443
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=167.96 Aligned_cols=202 Identities=19% Similarity=0.279 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEE
Q 016668 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (385)
Q Consensus 146 ~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (385)
..+||+ .++++||.++ .|.+.+|+.|+..++.++++|||.|+ +++.+.. +. ..+.+.|....
T Consensus 55 ~~~Lee----aia~~~g~~~-----vv~t~~Gt~Al~la~~al~~pGD~V~-~~~~f~~---~~-----~~i~~~Ga~pv 116 (431)
T cd00617 55 FYDLED----AVQDLFGFKH-----IIPTHQGRGAENILFSILLKPGRTVP-SNMHFDT---TR-----GHIEANGAVPV 116 (431)
T ss_pred HHHHHH----HHHHHHCCCe-----EEEcCCHHHHHHHHHHHhCCCCCEEc-cCCcccc---hH-----HHHHhCCCEeE
Confidence 446766 4778899876 36788899999999999999999884 4432222 11 13456676544
Q ss_pred EEeccccC---------CCCCCCHHHHHHHhhhc---CCcEEEEcCCCCC---CCC---CHHHHHHHHHHcCcEEEEecc
Q 016668 226 SMPYRLDE---------STGLVDYDMLEKTAILF---RPKLIIAGASAYP---RDF---DYPRMRQIADAVGALLMMDMA 287 (385)
Q Consensus 226 ~i~~~~~~---------~~~~iD~d~le~~i~~~---~pklIi~~~s~~~---~~~---dl~~I~~ia~~~ga~livD~a 287 (385)
.++ +++ .++.+|+++|++.+++. ++++|+++.++|+ .+. ++++|.++|+++|++|+.|++
T Consensus 117 ~v~--i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 117 DLV--IDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred EEe--cccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEch
Confidence 444 432 24569999999999753 3678888776664 444 467889999999999999999
Q ss_pred cccccc-c-----cCcccCC--------CCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhcc--CCC--cc
Q 016668 288 HISGLV-A-----ASVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV--FPG--LQ 349 (385)
Q Consensus 288 h~~Gli-~-----~g~~~~p--------~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~--fp~--~q 349 (385)
|..+-. + .|....+ +.++|.+++|+||.+.++-||+++++++ ++.+++.... +.+ ..
T Consensus 195 r~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~-----~l~~~~~~~~~~~~~~~~~ 269 (431)
T cd00617 195 RFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALRDD-----ELYEEARQRVVLYEGFVTY 269 (431)
T ss_pred hhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeCcH-----HHHHHHHHhccccCCcccc
Confidence 876411 1 1221222 2378999999999988889999999985 6878776543 222 24
Q ss_pred CCChHHHHHHHHHHHHHhhCchH
Q 016668 350 GGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 350 g~p~~~~iaala~Al~e~~~~~~ 372 (385)
|+.+...++|++++|.+....++
T Consensus 270 gG~~~r~~~A~A~gL~e~~~~~~ 292 (431)
T cd00617 270 GGMAGRDMEALAQGLREAVEEDY 292 (431)
T ss_pred ccccHHHHHHHHHHHHhcccHHH
Confidence 67778888999989988544333
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=171.33 Aligned_cols=175 Identities=26% Similarity=0.281 Sum_probs=131.4
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|.+.|+ |++..+.||+ +++++.|.+. .+.+.||+.|+..++.++++|||+|+++++.|++......
T Consensus 44 ~~~Y~R~--~npt~~~Le~----~lA~leg~e~-----ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~-- 110 (388)
T PRK08861 44 KYDYTRS--GNPNRGLLEQ----TLSELESGKG-----AVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFN-- 110 (388)
T ss_pred CccccCC--CCchHHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHH--
Confidence 3445554 6777788876 5788999754 3667778889999999999999999999988765422100
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
......| +++..+ + ..|++++++.+++ ++|+|+++.++|| ...|+++|.++|+++|+++++|++|..
T Consensus 111 --~~~~~~g--i~v~~v--d----~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~ 179 (388)
T PRK08861 111 --TRANKGD--FKVQFV--D----QSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLT 179 (388)
T ss_pred --HHHhcCC--eEEEEE--C----CCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccc
Confidence 0111223 344443 2 2589999998865 7999999888776 678999999999999999999999976
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHh
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~ 341 (385)
++. ..|++ |+|++++|+||++.||. ||+++++++ ++.+++.
T Consensus 180 ~~~-----~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~-----~~~~~~~ 224 (388)
T PRK08861 180 PVL-----QKPLELGADFVIHSTTKYINGHSDVIGGVLITKTK-----EHAEELA 224 (388)
T ss_pred ccc-----CCCcccCCCEEEeecceeccCCCcceeEEEEecHH-----HHHHHHH
Confidence 643 35677 89999999999999875 788888765 5666554
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=165.27 Aligned_cols=200 Identities=17% Similarity=0.156 Sum_probs=138.5
Q ss_pred cCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 109 ASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 109 asen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G-~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
+|++|. +|.++++....+ .+|.-|+.++|.+-| .....++|+ ++++++|.+. .+.++||+.|+..
T Consensus 4 ~s~dyLgl~~~~~~~~~~~~a~-~~~g~~~~~sr~~yg~~~~~~~LE~----~lA~~~g~e~-----al~~~sG~~a~~~ 73 (392)
T PLN03227 4 ATHDFLSTSSSPTLRQTALESL-SHYGCGSCGPRGFYGTIDAHLELEQ----CMAEFLGTES-----AILYSDGASTTSS 73 (392)
T ss_pred cCcCccCCCCCHHHHHHHHHHH-HHhCCCCcccccccCChHHHHHHHH----HHHHHhCCCc-----EEEecCcHHHHHH
Confidence 566665 788999988776 457677777665444 344556654 6899999986 4778999999999
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHH---Hhhh----------c
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK---TAIL----------F 250 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~---~i~~----------~ 250 (385)
++.++++|||+|++.++.|++... .+.+.+. ++..++. .|++++++ .+.. .
T Consensus 74 ~i~~l~~~GD~Vl~~~~~h~s~~~--------~~~l~~~--~~~~~~~------~d~~~l~~~~~~i~~~~~a~~~~~~~ 137 (392)
T PLN03227 74 TVAAFAKRGDLLVVDRGVNEALLV--------GVSLSRA--NVRWFRH------NDMKDLRRVLEQVRAQDVALKRKPTD 137 (392)
T ss_pred HHHHhCCCCCEEEEeccccHHHHH--------HHHHcCC--eEEEeCC------CCHHHHHHHHHHhhhhccccccccCC
Confidence 999999999999999876654321 2233333 3333322 23444444 3321 1
Q ss_pred CCcEEEEcCCC--CCCCCCHHHHHHHHHHcCcEEEEecccccccccc---Ccc----cCCCCCCcEEEECCCccCccccE
Q 016668 251 RPKLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVV----ADPFKYCDVVTTTTHKSLRGPRG 321 (385)
Q Consensus 251 ~pklIi~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~---g~~----~~p~~gaDiv~~S~hK~l~Gprg 321 (385)
++++|+++++. .+...|+++|+++|+++|+++++|++|+.|.... +.. ..|..++|++++|++|.+ ||.|
T Consensus 138 ~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~g 216 (392)
T PLN03227 138 QRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVG 216 (392)
T ss_pred CcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccC
Confidence 46788887654 3567899999999999999999999998664421 111 123347899999999975 7999
Q ss_pred EEEEEeCCCCchhHHHHHHh
Q 016668 322 GMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~ 341 (385)
|++++++ ++.+.+.
T Consensus 217 g~v~~~~------~~~~~~~ 230 (392)
T PLN03227 217 GMTVGSE------EVVDHQR 230 (392)
T ss_pred cEEecCH------HHHHHHH
Confidence 9998887 4555544
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-17 Score=163.48 Aligned_cols=238 Identities=18% Similarity=0.173 Sum_probs=155.8
Q ss_pred hhcccCChHHHHHHHHHHHHh----hhccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQ----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~----~~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~ 154 (385)
+++..+.+.++..+.+..... ..-++|-..++ .+++.+.+++...+......+|+. ..|.+ ++++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~aia 78 (388)
T PRK07366 5 QRLQPLQSNVFADMDRAKAQARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLL---FHGTL---DFREAAA 78 (388)
T ss_pred hhhhcCCccHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCC---CCCCH---HHHHHHH
Confidence 445555555555444433322 13345543333 458889999887664332223433 23544 6777778
Q ss_pred HHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC
Q 016668 155 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (385)
+++.+.+|.+.+ +.-+|.+++|+ +|+..++.++++|||+|++.+|.+.++.. .+...|..+..++ +++
T Consensus 79 ~~~~~~~g~~~~-~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~--~~~ 147 (388)
T PRK07366 79 QWYEQRFGLAVD-PETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAG--------GVYLAGGQIYPMP--LRA 147 (388)
T ss_pred HHHHHhhCCcCC-CcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCCEEEEEE--CCC
Confidence 888877775421 11147777776 59999999999999999999997765432 2345676554444 554
Q ss_pred C-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCc--ccCCCC--
Q 016668 234 S-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV--VADPFK-- 303 (385)
Q Consensus 234 ~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~--~~~p~~-- 303 (385)
+ ...+|++++++.+.. ++|+|++++++||+ ..+ +++|.++|+++|++||+|+++ ..+.+.+. .++...
T Consensus 148 ~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y-~~~~~~~~~~~~~~~~~~ 225 (388)
T PRK07366 148 ENDFLPVFADIPTEVLA-QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPY-VDLVFDGEVEPPSILQAD 225 (388)
T ss_pred ccCCCCCHHHHHHhhcc-cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecch-hhcccCCCCCCCChhhCC
Confidence 3 347899999877754 68999988888874 333 677888999999999999996 45554432 222222
Q ss_pred -CCc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 304 -YCD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 304 -gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
..+ +++.|++|++ +|.|.|++++++ ++.+++...
T Consensus 226 ~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~------~li~~l~~~ 264 (388)
T PRK07366 226 PEKSVSIEFFTLSKSYNMGGFRIGFAIGNA------QLIQALRQV 264 (388)
T ss_pred CCcccEEEEeecccccCCcchhheehcCCH------HHHHHHHHH
Confidence 123 5789999997 789999999877 576666544
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=160.17 Aligned_cols=207 Identities=17% Similarity=0.148 Sum_probs=142.2
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhc
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAIL 189 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all 189 (385)
+..+++.+.+++.+.+.+....+|+. ..|.+ ++++.+++++.+.+|.+... .-+|.+++|+ +++..++.+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~~ia~~~~~~~~~~~~~-~~~vi~t~G~~~~l~~~~~~~~ 112 (383)
T TIGR03540 40 DLPTPKHIVEALCKAAENPENHRYPS---YEGML---AYRQAVADWYKRRFGVELDP-ETEVLSLIGSKEGIAHIPLAFV 112 (383)
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCC---CCCCH---HHHHHHHHHHHHhhCCCCCC-CCeEEECCCcHHHHHHHHHHhC
Confidence 33458889999887664332234543 33544 67777788888888875321 1146666665 69999999999
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC-CCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCC
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDF 266 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~ 266 (385)
+|||+|++.+|.+.++.. .....|..+..++ +++++ ..+|++++++.+.. ++|+|+++.++|| ...
T Consensus 113 ~~gd~vlv~~P~y~~~~~--------~~~~~G~~v~~v~--~~~~~g~~~d~~~l~~~~~~-~~~~v~i~~P~NPtG~~~ 181 (383)
T TIGR03540 113 NPGDIVLVPDPGYPVYRI--------GTLFAGGEPYEMP--LKEENGFLPDFDAIPEDIAK-KAKLMFINYPNNPTGAVA 181 (383)
T ss_pred CCCCEEEEeCCCCcchHH--------HHHhcCCEEEEEe--cCcccCCccCHHHHHhhccc-cceEEEEeCCCCCcCccC
Confidence 999999999997655421 2345676544444 55443 46899999988854 7999988877877 345
Q ss_pred C---HHHHHHHHHHcCcEEEEeccccccccccCc-ccC--CCCC---CcEEEECCCccC--ccccEEEEEEeCCCCchhH
Q 016668 267 D---YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PFKY---CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVE 335 (385)
Q Consensus 267 d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~--p~~g---aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~ 335 (385)
+ +++|.++|+++|++||+|+++. .+.+.+. .++ .+++ -.+++.|++|+| +|.|.|++++++ +
T Consensus 182 ~~~~~~~i~~~a~~~~~~ii~De~y~-~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~------~ 254 (383)
T TIGR03540 182 PLKFFKELVEFAKEYNIIVCHDNAYS-EITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNA------D 254 (383)
T ss_pred CHHHHHHHHHHHHHcCEEEEEecchh-hhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCH------H
Confidence 5 6889999999999999999974 4444332 122 1222 226789999987 688899999876 5
Q ss_pred HHHHHhh
Q 016668 336 LESAINN 342 (385)
Q Consensus 336 ~~~~i~~ 342 (385)
+.+++..
T Consensus 255 l~~~~~~ 261 (383)
T TIGR03540 255 LIAGLGK 261 (383)
T ss_pred HHHHHHH
Confidence 6666654
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-17 Score=162.91 Aligned_cols=237 Identities=15% Similarity=0.108 Sum_probs=152.8
Q ss_pred hhcccCChHHHHHHHHHHHHhh----hcccccc--CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQF----KSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~----~~l~Lia--sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~ 154 (385)
+++....++.+..+.+...+.+ .-++|-. ++..+++.+.+++...+.+. ...|+. ..|.+ ++++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~---~~g~~---~lr~~ia 77 (388)
T PRK07337 5 ARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRG-VTQYTS---ALGLA---PLREAIA 77 (388)
T ss_pred hHhHhcCchHHHHHHHHHHHHHhcCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcC-CCCCCC---CCCCH---HHHHHHH
Confidence 4455555554444444333321 2244433 33345788899888766532 123433 12433 6777777
Q ss_pred HHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC
Q 016668 155 KRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (385)
+++.+.+|.+.. + .+|..++| +.|+..++.+++++||+|++.+|.|.++.. .+...|..+..++ ++.
T Consensus 78 ~~~~~~~~~~~~-~-~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~~~--~~~ 145 (388)
T PRK07337 78 AWYARRFGLDVA-P-ERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRH--------FVAAAEGRPVLVP--SGP 145 (388)
T ss_pred HHHHHHhCCCCC-h-HhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCCEEEEee--cCC
Confidence 788877786421 1 14555555 569999999999999999999997765421 2334565444444 553
Q ss_pred C-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCc
Q 016668 234 S-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD 306 (385)
Q Consensus 234 ~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaD 306 (385)
+ ++.+|++++++.+.+ ++++|+++.++||+ .. ++++|.++|+++|+++++|+++ .++...+...+.+. +.+
T Consensus 146 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~ 223 (388)
T PRK07337 146 AERFQLTAADVEAAWGE-RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIY-QGLSYDAAPVSALSLGDD 223 (388)
T ss_pred ccCCcCCHHHHHhhcCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccc-cccccCCCCcChhhccCC
Confidence 3 458999999998864 67888887777763 33 4788999999999999999996 45544332223333 334
Q ss_pred -EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhcc
Q 016668 307 -VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAV 344 (385)
Q Consensus 307 -iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~ 344 (385)
+++.|++|++ +|.|.|++++++ ++.+++....
T Consensus 224 vi~~~S~SK~~~~~G~RiG~~~~~~------~l~~~l~~~~ 258 (388)
T PRK07337 224 VITINSFSKYFNMTGWRLGWLVVPE------ALVGTFEKLA 258 (388)
T ss_pred EEEEEechhhcCCchhheeeeecCH------HHHHHHHHHH
Confidence 4678999987 688999999987 5666665443
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-18 Score=170.25 Aligned_cols=174 Identities=21% Similarity=0.232 Sum_probs=129.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|.+.|| |++..++||+ ++++++|.++ .+.+.||+.|+..++.++++|||+|++.++.|++.....
T Consensus 50 ~~~y~r~--~~p~~~~le~----~lA~l~g~~~-----av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~--- 115 (391)
T TIGR01328 50 GYIYSRL--GNPTVSNLEG----RIAFLEGTEA-----AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALL--- 115 (391)
T ss_pred CCceeCC--CCchHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHH---
Confidence 4545554 6677777776 5889999986 467889999999999999999999999988776543210
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
...+...|..+. .++++ |++++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|++|..
T Consensus 116 -~~~~~~~G~~~~--~vd~~------d~e~l~~~i~~-~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~ 185 (391)
T TIGR01328 116 -EHALTKFGIQVD--FINMA------IPEEVKAHIKD-NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFAT 185 (391)
T ss_pred -HHHHhcCCeEEE--EECCC------CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCch
Confidence 012234555433 33232 78999998865 7899998877765 577999999999999999999999876
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHh
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~ 341 (385)
+.. ..+++ ++|++++|++|++.|+. ||++++++ ++.+++.
T Consensus 186 ~~~-----~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~------~li~~l~ 229 (391)
T TIGR01328 186 PML-----TNPVALGVDVVVHSATKYIGGHGDVVAGLICGKA------ELLQQIR 229 (391)
T ss_pred hcc-----CCchhcCCCEEEccccccccCCCCceEEEEEcCH------HHHHHHH
Confidence 543 24555 89999999999997653 68887776 5555554
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=163.44 Aligned_cols=201 Identities=16% Similarity=0.177 Sum_probs=138.5
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcH---HHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNE---YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~---~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
..+...+.+++.. |..|+.++|...|+. +...+++ .++.+++++|++. + +.+.+|+.++..++.++
T Consensus 18 g~~~~~~~~a~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~-~~e~lA~~~g~~~----~-~i~~g~~~a~~~~~~~l 86 (370)
T TIGR02539 18 GVLTEAARKALVE-----FGDGYSVCDFCGGRLDQITKPPIHD-FLEDLAEFLGMDE----A-RVTHGAREGKFAVMHAL 86 (370)
T ss_pred CCCcHHHHHHHHH-----HhhccccccccccccccccchHHHH-HHHHHHHHhCCCc----e-EEECChHHHHHHHHHHh
Confidence 3446666666653 444666666544432 0112332 3445899999986 2 34677888999999999
Q ss_pred ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhh------cCCcEEEEcCCC
Q 016668 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAIL------FRPKLIIAGASA 261 (385)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~------~~pklIi~~~s~ 261 (385)
++|||+|++..++|.+.. ..+...|..+..++ .+. .++.+|++++++.+++ .++++|+++.++
T Consensus 87 ~~~gd~Vl~~~~~h~s~~--------~~~~~~g~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~ 156 (370)
T TIGR02539 87 CKEGDWVVLDGLAHYTSY--------VAAERAGLNVKEVP--HTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVD 156 (370)
T ss_pred hCCCCEEEECCcccHHHH--------HHHHHcCCEEEEEe--cCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCC
Confidence 999999999877543221 13456677665555 432 2468999999998853 257888887655
Q ss_pred --CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCcc-ccEEEEEEeCCCCchhHHH
Q 016668 262 --YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVELE 337 (385)
Q Consensus 262 --~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~G-prgG~I~~~~~~~~~~~~~ 337 (385)
++...|+++|.++|+++|+++++|++|+.|... ..... +.|+++.|+||++.+ .+.|++++++ ++.
T Consensus 157 ~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~----~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~------~~i 226 (370)
T TIGR02539 157 GEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMP----VSAKEIGADFIVGSGHKSMAASGPCGVLGMSE------EWE 226 (370)
T ss_pred CCCccccCHHHHHHHHHHcCCeEEEECccccCCcC----CCHHHcCCCEEEeeCcccccCCCCEEEEEECH------HHH
Confidence 456789999999999999999999999876321 11112 689999999999853 3569999887 566
Q ss_pred HHHhhc
Q 016668 338 SAINNA 343 (385)
Q Consensus 338 ~~i~~~ 343 (385)
+.+...
T Consensus 227 ~~l~~~ 232 (370)
T TIGR02539 227 DIVLRK 232 (370)
T ss_pred hhhccc
Confidence 665543
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-16 Score=161.18 Aligned_cols=205 Identities=15% Similarity=0.184 Sum_probs=138.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pG 192 (385)
+++.+.+++...+.+....+|+. ..|.+ ++++..++++.+.+|.+.+ ..-.|.+++| ++|+..++.++++||
T Consensus 49 ~p~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~aia~~~~~~~~~~~~-~~~~i~vt~G~~~al~~~~~~~~~~g 121 (394)
T PRK05942 49 APQPVIEAAIAALADPQNHGYPP---FEGTA---SFRQAITDWYHRRYGVELD-PDSEALPLLGSKEGLTHLALAYVNPG 121 (394)
T ss_pred CCHHHHHHHHHHHhCCCCccCCC---CCCCH---HHHHHHHHHHHHHHCCCcC-CCCeEEEccChHHHHHHHHHHhCCCC
Confidence 46667777665554322234543 23544 6777778888887786421 1113555666 469999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC--
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD-- 267 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d-- 267 (385)
|+|++.+|.|.++.. .+...|..+. +++++.+ ++.+|++++++.+.. ++|+|+++.++|| ...+
T Consensus 122 d~Vlv~~P~y~~~~~--------~~~~~g~~~~--~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~~~s~~ 190 (394)
T PRK05942 122 DVVLVPSPAYPAHFR--------GPLIAGAQIY--PIILKPENDWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTATAPRE 190 (394)
T ss_pred CEEEEcCCCCcchHH--------HHHHcCCEEE--EeecCCccCCccCHHHHHHhccc-cceEEEEcCCCCCCCCcCCHH
Confidence 999999998765432 2235566444 4445533 347999999998864 7999998877776 3444
Q ss_pred -HHHHHHHHHHcCcEEEEeccccccccccCcccCC---CC---CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHH
Q 016668 268 -YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK---YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELES 338 (385)
Q Consensus 268 -l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p---~~---gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~ 338 (385)
+++|.++|+++|+++|+|+++. .+...+..+.+ +. ...+++.|++|.| +|.|.|++++++ ++.+
T Consensus 191 ~~~~i~~~a~~~~~~iI~De~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~------~l~~ 263 (394)
T PRK05942 191 FFEEIVAFARKYEIMLVHDLCYA-ELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNR------HIIQ 263 (394)
T ss_pred HHHHHHHHHHHcCeEEEEeccch-hhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCH------HHHH
Confidence 7889999999999999999974 34333321112 22 1236789999976 778899999877 5777
Q ss_pred HHhhc
Q 016668 339 AINNA 343 (385)
Q Consensus 339 ~i~~~ 343 (385)
.+...
T Consensus 264 ~l~~~ 268 (394)
T PRK05942 264 GLRTL 268 (394)
T ss_pred HHHHH
Confidence 66543
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-17 Score=161.98 Aligned_cols=233 Identities=20% Similarity=0.221 Sum_probs=150.6
Q ss_pred cccccCCC---CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 105 LELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 105 l~Liasen---~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
|++..+++ .++|.|++++...+. +|..+++..+...|.. .+....++++++++|.+. .+.+++|+.++
T Consensus 42 id~~~~~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~---~~~~~l~~~la~~~~~~~-----~i~~~~g~~~~ 112 (385)
T PRK05958 42 LNFASNDYLGLARHPRLIAAAQQAAR-RYGAGSGGSRLVTGNS---PAHEALEEELAEWFGAER-----ALLFSSGYAAN 112 (385)
T ss_pred EEeeCCCcccCCCCHHHHHHHHHHHH-hcCCCCCCcCcccCCc---HHHHHHHHHHHHHhCCCc-----EEEECcHHHHH
Confidence 45544443 257899999988775 3443344333333332 233345567888998543 46778899988
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA 259 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~ 259 (385)
..++.++++|||+|++.++.|+++.. .+...|..+..++ ..|++.+++.++.. ++++++++.
T Consensus 113 ~~~l~~~~~~gd~V~~~~~~~~~~~~--------~~~~~g~~~~~~~--------~~d~~~l~~~i~~~~~~~~lvi~~~ 176 (385)
T PRK05958 113 LAVLTALAGKGDLIVSDKLNHASLID--------GARLSRARVRRYP--------HNDVDALEALLAKWRAGRALIVTES 176 (385)
T ss_pred HHHHHHhCCCCCEEEEeCccCHHHHH--------HHHhcCCceEEeC--------CCCHHHHHHHHHhccCCCeEEEEEe
Confidence 88888889999999999887655431 2334555443332 24889999988653 245666665
Q ss_pred CCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccc-cCc-ccC--CCC-CCc-EEEECCCccCccccEEEEEEeCCCC
Q 016668 260 SAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASV-VAD--PFK-YCD-VVTTTTHKSLRGPRGGMIFFKKDPV 331 (385)
Q Consensus 260 s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~-~g~-~~~--p~~-gaD-iv~~S~hK~l~GprgG~I~~~~~~~ 331 (385)
..+ |...++++|.++|+++|+++|+|++|..|... .+. ... .++ ..| +++.|+||+| |+.||+++.++
T Consensus 177 ~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Gg~~~~~~--- 252 (385)
T PRK05958 177 VFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSGAAVLGSE--- 252 (385)
T ss_pred cccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCCcEEEcCH---
Confidence 443 45678999999999999999999999766542 121 111 122 334 7899999998 56788888876
Q ss_pred chhHHHHHHhhccCCCc-cCCChHHHHHHHHHHHHHhhC
Q 016668 332 LGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 332 ~~~~~~~~i~~~~fp~~-qg~p~~~~iaala~Al~e~~~ 369 (385)
++.+.+.....+.. .+++++..+++...+++.+..
T Consensus 253 ---~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~ 288 (385)
T PRK05958 253 ---TLIDYLINRARPFIFTTALPPAQAAAARAALRILRR 288 (385)
T ss_pred ---HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc
Confidence 56666644332222 234556666666677765543
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-18 Score=169.95 Aligned_cols=167 Identities=19% Similarity=0.198 Sum_probs=125.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++.++++|+ .+++++|.+. .+.++||+.|+..++.++++|||+|+++++.|++..... ..+...|
T Consensus 51 ~np~~~~lE~----~lA~l~g~~~-----~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~-----~~~~~~g 116 (385)
T PRK08574 51 ENPTLRPLEE----ALAKLEGGVD-----ALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLL-----KSLEKFG 116 (385)
T ss_pred CCccHHHHHH----HHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHH-----HHhhccC
Confidence 6677777776 5889999875 366789999999999999999999999998776543210 1112334
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+. . + .+|++++++.+++.++|+|+++.+++| ...|+++|+++|+++|+++++|++|+.|+..
T Consensus 117 ~~v~--~--~-----~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~----- 182 (385)
T PRK08574 117 VKVV--L--A-----YPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLY----- 182 (385)
T ss_pred cEEE--E--E-----CCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC-----
Confidence 3322 2 1 247899999886547899999887776 4689999999999999999999999777542
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~ 341 (385)
.+++ ++|++++|+||++.||. ||+++++++ ++.+++.
T Consensus 183 ~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~-----~~~~~~~ 223 (385)
T PRK08574 183 RPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSG-----EFLEELW 223 (385)
T ss_pred ChhhhCCcEEEeeCceeecCCCCceeEEEEECcH-----HHHHHHH
Confidence 3455 89999999999998873 786777654 5666554
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-17 Score=163.96 Aligned_cols=238 Identities=13% Similarity=0.145 Sum_probs=160.0
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhcccccc--CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Lia--sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~ 156 (385)
+++++..+.+.++..+...... ..-++|-. ++..+++.+++++...+.... .+|+. ..|.+ ++++..+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~G~~---~lr~~~a~~ 79 (386)
T PRK09082 8 PQSKLPNVGTTIFTVMSALAAE-HGAINLSQGFPDFDGPPYLVEALAYAMAAGH-NQYPP---MTGVA---ALREAIAAK 79 (386)
T ss_pred hhhHhhccCccHHHHHHHHHhh-CCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-CCCCC---CCCcH---HHHHHHHHH
Confidence 4556666677777665543322 23355543 333457889998887664322 23433 23444 677778888
Q ss_pred HHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC
Q 016668 157 ALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (385)
Q Consensus 157 la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 235 (385)
+.+++|.+.+ ...+|.+++| +.|+..++.++++|||+|++.+|.|.++.. .+...|..+. ++++++++
T Consensus 80 l~~~~~~~~~-~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~--------~~~~~g~~~~--~~~~~~~~ 148 (386)
T PRK09082 80 TARLYGRQYD-ADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAP--------AIELAGGRAV--RVALQPPD 148 (386)
T ss_pred HHHHhCCCCC-CCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHH--------HHHHcCCEEE--EEecCccc
Confidence 9999998642 1113555555 579999999999999999999987655321 3345666444 44455456
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--C---CCHHHHHHHHHHcCcEEEEeccccccccccCc-ccCCC--CC---
Q 016668 236 GLVDYDMLEKTAILFRPKLIIAGASAYPR--D---FDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF--KY--- 304 (385)
Q Consensus 236 ~~iD~d~le~~i~~~~pklIi~~~s~~~~--~---~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p~--~g--- 304 (385)
+.+|++++++.++. ++|+|+++.++||+ . .++++|.++|+++|+++|+|++| ..+.+.+. .++.. .+
T Consensus 149 ~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y-~~~~~~~~~~~s~~~~~~~~~ 226 (386)
T PRK09082 149 FRVDWQRFAAAISP-RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVY-EHIVFDGAGHASVLRHPELRE 226 (386)
T ss_pred ccCCHHHHHHhcCc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhh-hhhccCCCCCCChhhCcCccC
Confidence 78999999999865 78999887777763 2 46889999999999999999997 44554332 22222 12
Q ss_pred CcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 305 CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 305 aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
-.+++.|++|++ +|.|.|++++++ ++.+.+...
T Consensus 227 ~~i~~~S~SK~~~~~G~RiG~iv~~~------~l~~~~~~~ 261 (386)
T PRK09082 227 RAFVVSSFGKTYHVTGWKVGYCVAPA------ALSAEFRKV 261 (386)
T ss_pred cEEEEeechhhccchhhhhhhhhCCH------HHHHHHHHH
Confidence 237889999997 688999999986 566655443
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=167.50 Aligned_cols=169 Identities=25% Similarity=0.289 Sum_probs=126.4
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++...+||+ ++++++|.+.. +.+.||+.|+..++.++++|||+|+++++.|++..... . ......|
T Consensus 59 ~~p~~~~Le~----~lA~~~g~~~~-----i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~--~--~~~~~~g 125 (388)
T PRK07811 59 GNPTRTALEE----QLAALEGGAYG-----RAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLI--D--KVFTRWG 125 (388)
T ss_pred CCccHHHHHH----HHHHHhCCCce-----EEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHH--H--HhCcCCC
Confidence 4455566665 68889999873 56789999999999999999999999998876542110 0 0112234
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
. ++..++ ..|++++++.+++ ++|+|+++.+++| ...|+++|+++|+++|++|++|++++.+.. .
T Consensus 126 i--~~~~~d------~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~-----~ 191 (388)
T PRK07811 126 V--EYTPVD------LSDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYL-----Q 191 (388)
T ss_pred e--EEEEeC------CCCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCcccc-----C
Confidence 3 333322 2589999999865 7999999887776 578999999999999999999999866532 2
Q ss_pred CCCC-CCcEEEECCCccCccc---cEEEEEEeCCCCchhHHHHHHhh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.|+. ++|++++|++|++.|| +||+++++++ ++.+++..
T Consensus 192 ~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~-----~l~~~~~~ 233 (388)
T PRK07811 192 QPLALGADVVVHSTTKYIGGHSDVVGGALVTNDE-----ELDEAFAF 233 (388)
T ss_pred CchhhCCcEEEecCceeecCCCCcEEEEEEECCH-----HHHHHHHH
Confidence 4555 8999999999999887 4798888765 56665543
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=166.61 Aligned_cols=168 Identities=22% Similarity=0.262 Sum_probs=124.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
|++..++||+ ++++++|.+. .+.++||+.|+..++. +++|||+|++.++.|++..... ...+...|
T Consensus 45 ~~p~~~~le~----~la~l~g~~~-----~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~----~~~~~~~G 110 (378)
T TIGR01329 45 GNPTRTALES----LLAKLDKADR-----AFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLL----TQVVPRSG 110 (378)
T ss_pred CChHHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHH----HHHHHHcC
Confidence 6676666665 6888999865 4678899988887665 8899999999988776542110 00123456
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+..++ . .|++++++.+++ ++|+|+++.++++ ...|+++|+++|+++|+++++|++|..++. .
T Consensus 111 ~~v~~vd--~------~d~~~le~~i~~-~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~-----~ 176 (378)
T TIGR01329 111 VVVVHVD--T------TDLDKVKAALGP-KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL-----C 176 (378)
T ss_pred cEEEEeC--C------CCHHHHHHhcCc-CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 5444332 2 388999999864 7899998877765 577999999999999999999999866542 3
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.|++ ++|++++|+||++.||. +|+++++++ ++.+++..
T Consensus 177 ~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~-----~~~~~~~~ 218 (378)
T TIGR01329 177 NPLELGADIVYHSATKFLAGHSDVMAGVLAVKGE-----EIAKKVYF 218 (378)
T ss_pred ChhhcCCcEEEEecceeccCCccceeEEEEeCcH-----HHHHHHHH
Confidence 4556 89999999999998864 788888765 55565543
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-16 Score=158.74 Aligned_cols=239 Identities=15% Similarity=0.089 Sum_probs=157.7
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhcccccc--CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQFKSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~~~l~Lia--sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~l 157 (385)
++++....+.++..+.+...+....++|-. +...+++.+.+++...+.+....+|+. ..|.+ ++++.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~---~~G~~---~lr~~~~~~l 78 (389)
T PRK05957 5 TSRMDAVQSPIIPVVGQLIRENPGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQA---VQGIP---PLLEAITQKL 78 (389)
T ss_pred hHHHHhcCCcHHHHHHHHHHhCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCCCH---HHHHHHHHHH
Confidence 455555566666554443333223355543 334578899999887664332223433 23444 5667778889
Q ss_pred HHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC
Q 016668 158 LAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (385)
Q Consensus 158 a~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 236 (385)
++.+|.+.+.. .+|.+++|+ .++..++.++++|||+|++.+|.+..|.. .+...|..+..++ .+ +++
T Consensus 79 ~~~~g~~~~~~-~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~--~~-~~~ 146 (389)
T PRK05957 79 QQDNGIELNNE-QAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEM--------AITMAGCQPILVP--TD-DNY 146 (389)
T ss_pred HHHhCCCCCCC-CeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHH--------HHHhcCCEEEEee--cC-CCC
Confidence 99999752101 245666665 58888888999999999999987655422 2345566544444 44 356
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCc-ccCCC---C-C-C
Q 016668 237 LVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF---K-Y-C 305 (385)
Q Consensus 237 ~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p~---~-g-a 305 (385)
.+|++++++.++. ++|+|++..++|| ...+ +++|.++|+++|+++++|+++ ..+.+.+. ..++. + . -
T Consensus 147 ~~d~~~l~~~i~~-~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~ 224 (389)
T PRK05957 147 QLQPEAIEQAITP-KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAY-EYFTYDGVKHFSPGSIPGSGNH 224 (389)
T ss_pred CcCHHHHHHhcCc-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccc-hhccCCCCCccChhhCCCccCc
Confidence 7999999998864 7899988877776 3455 889999999999999999997 45544321 11111 2 2 1
Q ss_pred cEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhcc
Q 016668 306 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAV 344 (385)
Q Consensus 306 Div~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~ 344 (385)
-|++.|++|.+ +|.|.|++++++ ++.+++....
T Consensus 225 ~i~~~S~SK~~g~~GlRiG~~~~~~------~~~~~~~~~~ 259 (389)
T PRK05957 225 TISLYSLSKAYGFASWRIGYMVIPI------HLLEAIKKIQ 259 (389)
T ss_pred EEEEecchhhccCccceeEEEecCH------HHHHHHHHHH
Confidence 26789999997 678899999876 5777766543
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-17 Score=161.62 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccC--CCEEeecCCCCCccccCCccccccccccCc---
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS--- 221 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~p--GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g--- 221 (385)
++.+.+++++++++|++.++ +.+ +.+|+ .++.++..+++++ ||+|+++++.|+++.. .+...+
T Consensus 64 ~~~~~~~~~la~~~g~~~~~--v~~-~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~--------~~~~~~~~~ 132 (398)
T cd00613 64 QALFELQTMLCELTGMDVAN--ASL-QDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPA--------VARTRGEPL 132 (398)
T ss_pred HHHHHHHHHHHHHHCCCccc--eec-cCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHH--------HHHHhcccC
Confidence 67777888999999997532 333 44455 4556666666776 9999999987766532 122233
Q ss_pred -ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCCCCH-HHHHHHHHHcCcEEEEeccccccccccCcc
Q 016668 222 -IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDY-PRMRQIADAVGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 222 -~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~~~~dl-~~I~~ia~~~ga~livD~ah~~Gli~~g~~ 298 (385)
..+..++ ++ +++.+|++++++.+.+ ++++|+++.++ ++...|+ ++|+++|+++|+++++|++|..|....
T Consensus 133 g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~--- 205 (398)
T cd00613 133 GIEVVEVP--SD-EGGTVDLEALKEEVSE-EVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLK--- 205 (398)
T ss_pred CcEEEEec--cC-CCCCcCHHHHHHhcCC-CeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEeccccccCCC---
Confidence 5444444 43 2457999999998865 68888776554 3555675 999999999999999999986553211
Q ss_pred cCCCC-CCcEEEECCCccC-----ccccEEEEEEeCC
Q 016668 299 ADPFK-YCDVVTTTTHKSL-----RGPRGGMIFFKKD 329 (385)
Q Consensus 299 ~~p~~-gaDiv~~S~hK~l-----~GprgG~I~~~~~ 329 (385)
.+-. ++|++++|+||++ .||++|+++.+++
T Consensus 206 -~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~ 241 (398)
T cd00613 206 -PPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKE 241 (398)
T ss_pred -ChHHcCCCEEEeeccccCCCCCCCCCceeEEEEhhh
Confidence 1112 7899999999997 2578889988774
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=160.84 Aligned_cols=224 Identities=22% Similarity=0.229 Sum_probs=149.3
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
.+++.+.+++...+. ++...+...++..|.. .+.+.+++++++++|.+. .+.+++|++++..++.++++||
T Consensus 47 ~~~~~~~~a~~~~~~-~~~~~~~~~~~~~g~~---~l~~~l~~~l~~~~g~~~-----~i~~~sG~~a~~~a~~~~~~~g 117 (385)
T TIGR01825 47 ADHPRLKEAAAQAIQ-QYGVGAGAVRTIAGTL---RLHEELEEKLAKFKKTEA-----ALVFQSGFNTNQGVLSALLRKG 117 (385)
T ss_pred CCCHHHHHHHHHHHH-HcCCCCCccCcccCCc---HHHHHHHHHHHHHhCCCc-----EEEECcHHHHHHHHHHHhCCCC
Confidence 378888888876654 3332233323344543 556667778999999754 4778899999999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc---CCcEEEEcCCCC--CCCCC
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIAGASAY--PRDFD 267 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~---~pklIi~~~s~~--~~~~d 267 (385)
|.|++.++.|+++.. .+...|..+. .+ ..+|++++++.+++. ++++|+++...+ |...|
T Consensus 118 d~vi~~~~~~~~~~~--------~~~~~g~~~~--~~------~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~ 181 (385)
T TIGR01825 118 DIVLSDELNHASIID--------GLRLTKATKK--IY------KHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP 181 (385)
T ss_pred CEEEEEccccHHHHH--------HHHhcCCceE--Ee------CCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccC
Confidence 999988876654321 2233444322 21 147889998877542 567888775443 45779
Q ss_pred HHHHHHHHHHcCcEEEEeccccccccc-cCc--c-cCCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 268 YPRMRQIADAVGALLMMDMAHISGLVA-ASV--V-ADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 268 l~~I~~ia~~~ga~livD~ah~~Gli~-~g~--~-~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+++|.++|+++|+++++|++|..|... .+. . ...++ +.|+++.|+||+| |..||++++++ ++.+.+..
T Consensus 182 ~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~gG~~~~~~------~~~~~~~~ 254 (385)
T TIGR01825 182 LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAI-GVVGGYAAGHK------ELIEYLKN 254 (385)
T ss_pred HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHh-hcCCCEEecCH------HHHHHHHH
Confidence 999999999999999999999666432 111 0 01222 5678999999998 56789888776 56666654
Q ss_pred ccCCCccC-CChHHHHHHHHHHHHHhh
Q 016668 343 AVFPGLQG-GPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 343 ~~fp~~qg-~p~~~~iaala~Al~e~~ 368 (385)
...+...+ .+++...+++..+++.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~a~~~al~~~~ 281 (385)
T TIGR01825 255 RARPFLFSTAQPPAVVAALAAAVDELQ 281 (385)
T ss_pred hCccccccCCCCHHHHHHHHHHHHHHh
Confidence 43223333 244555667777776543
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-17 Score=165.76 Aligned_cols=169 Identities=24% Similarity=0.273 Sum_probs=126.0
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..++||+ ++++++|.+. .+.+.||+.|+..++.++++|||+|++.++.|++.... + . ......|
T Consensus 58 ~~p~~~~Le~----~lA~l~g~~~-----~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~-~-~--~~~~~~g 124 (405)
T PRK08776 58 GNPTRDLLGE----ALAELEGGAG-----GVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRL-F-N--ALAKKGH 124 (405)
T ss_pred CChHHHHHHH----HHHHHhCCCc-----eEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHH-H-H--HHHHhcC
Confidence 5666666665 6788999865 47788999999999999999999999998877653210 0 0 0112234
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
. ++..++ ..|++++++.+++ ++|+|+++.++|| ...|+++|.++|+++|+++++|++|..+. ..
T Consensus 125 ~--~v~~v~------~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~-----~~ 190 (405)
T PRK08776 125 F--ALITAD------LTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPA-----LQ 190 (405)
T ss_pred c--EEEEEC------CCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccc-----cC
Confidence 3 333322 2488999998864 7899998888776 57899999999999999999999986543 23
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.|++ ++|++++|+||++.|+. ||+++++++ ++.+++..
T Consensus 191 ~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~-----~l~~~l~~ 232 (405)
T PRK08776 191 KPLEFGADLVLHSTTKYINGHSDVVGGAVVARDA-----ELHQQLVW 232 (405)
T ss_pred CcccccCCEEEecCceeecCCCCceEEEEEeCCH-----HHHHHHHH
Confidence 5666 89999999999998874 688888665 66666643
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=166.24 Aligned_cols=189 Identities=24% Similarity=0.291 Sum_probs=132.4
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all 189 (385)
+..+..+.+.++....... ..+|.++|+ +++..+++|+ ++++++|.+. .+.++||+.|+..++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~--~~~~~y~r~--~~p~~~~le~----~la~l~g~~~-----~v~~ssG~~Ai~~al~al~ 97 (390)
T PRK08133 31 TSSFVFESAAEAAARFAGE--EPGNIYSRF--TNPTVTMFQE----RLAALEGAEA-----CVATASGMAAILAVVMALL 97 (390)
T ss_pred CCCcccCCHHHHHHhhcCC--cCCceeECC--CChHHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHh
Confidence 3344445555544332211 124555554 4666666665 6889999876 3667899999999999999
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d 267 (385)
+|||+|++.++.|++.... + ...+...|..+. .+++ .|++++++.+++ ++|+|+++.+++| ...|
T Consensus 98 ~~Gd~Vi~~~~~y~~t~~~-~---~~~~~~~G~~v~--~vd~------~d~~~l~~~i~~-~tklV~ie~p~NptG~v~d 164 (390)
T PRK08133 98 QAGDHVVSSRSLFGSTVSL-F---EKIFARFGIETT--FVDL------TDLDAWRAAVRP-NTKLFFLETPSNPLTELAD 164 (390)
T ss_pred CCCCEEEEccCcchhHHHH-H---HHHHHHcCcEEE--EECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCCcCC
Confidence 9999999998877654321 0 011234565443 4333 278999998865 7899998877665 5789
Q ss_pred HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCccc---cEEEEEEeCC
Q 016668 268 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKD 329 (385)
Q Consensus 268 l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~ 329 (385)
+++|.++|+++|+++++|+++..+.. ..|++ ++|++++|+||++.|+ -||+|+++++
T Consensus 165 l~~I~~la~~~gi~livD~t~~~~~~-----~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~ 225 (390)
T PRK08133 165 IAALAEIAHAAGALLVVDNCFCTPAL-----QQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKE 225 (390)
T ss_pred HHHHHHHHHHcCCEEEEECCCccccc-----CCchhhCCcEEEeecceeecCCcceEeEEEEcCHH
Confidence 99999999999999999999865432 24555 8999999999998664 3588887763
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=166.85 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=120.7
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..++||+ .+++++|.+. .+.+.||+.|+..++.++++|||+|++.++.|++..... . ......|
T Consensus 59 ~~pt~~~Le~----~lA~l~G~~~-----al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~--~--~~~~~~g 125 (386)
T PRK06767 59 GNPTVKLFEE----RMAVLEGGEE-----ALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFL--E--VLEEKFM 125 (386)
T ss_pred CCcchHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHH--H--HHHhhcC
Confidence 5666677776 5889999865 477889999999999999999999999988776543210 0 0011123
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
. +... + ...|++++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|++|..+.. .
T Consensus 126 i--~~~~--~----~~~d~~~l~~~i~~-~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~-----~ 191 (386)
T PRK06767 126 I--THSF--C----DMETEADIENKIRP-NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYL-----Q 191 (386)
T ss_pred e--EEEE--e----CCCCHHHHHHhhCc-CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 2 2211 1 13488999998865 7899999888776 568999999999999999999999865432 2
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeCC
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~ 329 (385)
.|+. ++|++++|++|++.|+. ||+++++++
T Consensus 192 ~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~ 225 (386)
T PRK06767 192 RPLELGCDAVVHSATKYIGGHGDVVAGVTICKTR 225 (386)
T ss_pred CchhcCCcEEEecCcceecCCCCceeEEEEeChH
Confidence 4455 89999999999997764 799998874
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-17 Score=165.27 Aligned_cols=227 Identities=15% Similarity=0.146 Sum_probs=144.4
Q ss_pred CCCcHHHHHHHhhHhhccCCC-CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc
Q 016668 112 NFTSRAVMEAVGSCLTNKYSE-GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK 190 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~-g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~ 190 (385)
.+.++.|++++...+.+ |.. .|.-.....| ...+. +++.+++++|+++. +.+.||+.|+..++ ..+.
T Consensus 91 s~l~~~vieAv~~~~~~-y~~l~~~l~~g~~g-~r~~~----le~~lA~l~gae~a-----lvv~sg~aAi~l~l-~~l~ 158 (454)
T TIGR00474 91 APLAEEAIEAVTDAARG-YSNLEYDLETGKRG-SRYSH----VEGLLCELTGAEDA-----LVVNNNAAAVLLAL-NTLA 158 (454)
T ss_pred CCCCHHHHHHHHHHHhc-ccchhccccccccc-hHHHH----HHHHHHHHhCCCcE-----EEECCHHHHHHHHH-HHhC
Confidence 45699999999877653 321 1110000112 22233 45578999999873 45788999998887 4579
Q ss_pred CCCEEeecCCCC---CccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC----
Q 016668 191 PHDRIMGLDLPH---GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP---- 263 (385)
Q Consensus 191 pGD~Vl~~~~~~---ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~---- 263 (385)
+||+|++.+.+| ||..... ..+...|..+. .++.+ ...|++++++.+++ ++++|++..++++
T Consensus 159 ~GdeVIvs~~e~v~~ggs~~i~-----~~~~~~G~~~~--~v~~~---~~~~l~dle~aI~~-~T~lv~~~h~sN~~~~G 227 (454)
T TIGR00474 159 KGKEVIVSRGELVEIGGSFRIP-----DVMEQSGAKLV--EVGTT---NRTHLKDYEDAITE-NTALLLKVHTSNYRIVG 227 (454)
T ss_pred CcCEEEECCChhhhhcchhhHH-----HHHHHcCCEEE--EeCCC---CCCCHHHHHHhcCc-CCEEEEEEccCcccccC
Confidence 999999988653 3322211 12345666444 33332 34689999999865 6888766544332
Q ss_pred --CCCCHHHHHHHHHHcCcEEEEecccccccccc----C--c---ccCCCC-CCcEEEECCCccCccccEEEEEEeCCCC
Q 016668 264 --RDFDYPRMRQIADAVGALLMMDMAHISGLVAA----S--V---VADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPV 331 (385)
Q Consensus 264 --~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~----g--~---~~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~ 331 (385)
...|+++|+++|+++|+++++|.+ +|.... + . ...+++ |+|++++|+||+|.||++|++++++
T Consensus 228 ~~~~~dl~~I~~la~~~g~~vivD~~--sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~--- 302 (454)
T TIGR00474 228 FTEEVSIAELVALGREHGLPVMEDLG--SGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKK--- 302 (454)
T ss_pred CCCCCCHHHHHHHHHHcCCeEEEECC--CcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECH---
Confidence 367999999999999999999975 444311 1 1 113344 8999999999999999999999987
Q ss_pred chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCc
Q 016668 332 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 332 ~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
++.+++....+.-.. ...-.+++++..++.....+
T Consensus 303 ---~~i~~l~~~~l~r~l-r~~k~~la~l~~~l~~~~~~ 337 (454)
T TIGR00474 303 ---ELIERLKKNPLTRAL-RVDKLTLAALEATLRLYLDP 337 (454)
T ss_pred ---HHHHhhhhchhHHHH-hhChHHHHHHHHHHHHHhCc
Confidence 455555432211000 12334566666677666554
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=164.83 Aligned_cols=169 Identities=23% Similarity=0.270 Sum_probs=127.1
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+++|+ ++++++|.+. .+.++||+.|+..++.++++|||+|++.++.|++.... .. ......|
T Consensus 38 ~~p~~~~le~----~la~l~g~~~-----a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~--~~--~~~~~~g 104 (369)
T cd00614 38 GNPTVDALEK----KLAALEGGEA-----ALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRL--FE--RLLPKLG 104 (369)
T ss_pred CChhHHHHHH----HHHHHHCCCC-----EEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHH--HH--HHHhhcC
Confidence 6777777776 5788999875 36778999999999999999999999998877553210 00 0122445
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+ ..++. -|++++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|++|..++. .
T Consensus 105 ~~~--~~v~~------~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~-----~ 170 (369)
T cd00614 105 IEV--TFVDP------DDPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL-----Q 170 (369)
T ss_pred eEE--EEeCC------CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc-----C
Confidence 433 33322 268999998865 7899998877665 577999999999999999999999876543 3
Q ss_pred CCCC-CCcEEEECCCccCccc---cEEEEEEeCCCCchhHHHHHHhh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.+++ ++|++++|++|++.|+ +||+++++++ ++.+++..
T Consensus 171 ~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~-----~l~~~l~~ 212 (369)
T cd00614 171 RPLELGADIVVHSATKYIGGHSDVIAGVVVGSGE-----ALIQRLRF 212 (369)
T ss_pred ChhhhCCcEEEeccceeccCCCCceEEEEEeCcH-----HHHHHHHH
Confidence 4566 8999999999999774 4899999874 45565543
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=158.44 Aligned_cols=237 Identities=17% Similarity=0.128 Sum_probs=152.2
Q ss_pred hhcccCChHHHHHHHHHHHHh---h-hccccccCC--CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQ---F-KSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~---~-~~l~Liase--n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~ 154 (385)
+++....++.+..+.+...+. . ..++|-.++ ..+++.+.+++...+.......|+. ..|.+ ++++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~aia 79 (385)
T PRK09276 6 DRIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPS---YEGML---EFRKAVA 79 (385)
T ss_pred hHhhhCCccHHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCCcH---HHHHHHH
Confidence 445555665554443333222 1 234444333 3457888998887664322223443 23433 6777777
Q ss_pred HHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC
Q 016668 155 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (385)
+++.+.+|.+.+ ..-+|.+++|+ +|+..++.++++|||+|++++|.+..+.. .....|..+..++ ++.
T Consensus 80 ~~~~~~~g~~~~-~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~--------~~~~~g~~~~~v~--~~~ 148 (385)
T PRK09276 80 DWYKRRFGVELD-PETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKI--------GTIFAGGEPYFMP--LKE 148 (385)
T ss_pred HHHHHHhCCCCC-CCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHH--------HHHHcCCEEEEEe--cCC
Confidence 888877786421 11136666665 69999999999999999999987654321 2345676555444 543
Q ss_pred C-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCc-ccCC--CCC
Q 016668 234 S-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FKY 304 (385)
Q Consensus 234 ~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p--~~g 304 (385)
+ ...+|++++++.+.. ++|+|++++++||+ ..+ +++|.++|+++|+++|+|+++. .+...+. .++. +++
T Consensus 149 ~~g~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~ 226 (385)
T PRK09276 149 ENGFLPDLDAIPEDVAK-KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYS-EIAYDGYKPPSFLEVPG 226 (385)
T ss_pred CCCCcCCHHHHHHhccc-cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchh-heecCCCCCCChhccCC
Confidence 3 346899999888754 78999988778763 444 5788899999999999999974 4443332 2221 222
Q ss_pred ---CcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 305 ---CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 305 ---aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
-.+++.|++|.| +|.|.|++++++ ++.+.+..
T Consensus 227 ~~~~~i~~~S~SK~~g~~GlRiG~~i~~~------~l~~~~~~ 263 (385)
T PRK09276 227 AKDVGIEFHSLSKTYNMTGWRIGFAVGNA------DLIAGLGK 263 (385)
T ss_pred CcCCEEEEecchhhcCCcchhheeeeCCH------HHHHHHHH
Confidence 236789999987 678889999877 56666544
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=160.40 Aligned_cols=235 Identities=15% Similarity=0.071 Sum_probs=158.6
Q ss_pred ccCChHHHHHHHHHHHHhh------hccccccCC--CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 84 GEADPEVCEIITKEKERQF------KSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 84 ~~~dp~~~~~i~~e~~~~~------~~l~Liase--n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
+...++.|+.+....++.. .-++|-..+ ..+++.+.+++...+......+|+. .|.+ ++++.+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~~----~G~~---~lr~aia~ 92 (410)
T PRK06290 20 KETVIYKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYAD----NGIQ---EFKEAAAR 92 (410)
T ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC----CCcH---HHHHHHHH
Confidence 4455567777766555432 124554333 3368888888876553322234542 2444 77777888
Q ss_pred HHHHHcCCC-CCCCcceeecCCcHH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC
Q 016668 156 RALAAFNLD-ENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (385)
Q Consensus 156 ~la~lfg~~-~~~~~~~V~~~sGs~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (385)
++.+.+|.+ .+ +..+|..++|+. |+..++.++++|||.|++++|.|.++.. .+...|..+. ++++++
T Consensus 93 ~~~~~~g~~~~~-~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~v~--~v~~~~ 161 (410)
T PRK06290 93 YMEKVFGVKDID-PVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGT--------HTKYYGGEVY--NLPLLE 161 (410)
T ss_pred HHHHHcCCCcCC-CcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHH--------HHHHcCCEEE--EEecCC
Confidence 888888865 21 111477888875 8888999999999999999997655422 2345666444 444654
Q ss_pred C-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCC--CC--
Q 016668 234 S-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FK-- 303 (385)
Q Consensus 234 ~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p--~~-- 303 (385)
+ ++.+|++++++.+.. ++|+|+++.|+||+ ..+ +++|.++|+++|++||+|+++. .+...+..++. +.
T Consensus 162 ~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~-~~~~~~~~~s~~~~~~~ 239 (410)
T PRK06290 162 ENNFLPDLDSIPKDIKE-KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYA-ALTFDGKPLSFLSVPGA 239 (410)
T ss_pred CcCCcCCHHHHHHhhcc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchh-hceeCCCCcChhcCCCc
Confidence 3 357899999988854 78999998888873 455 6788888999999999999974 44443322221 11
Q ss_pred -CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhcc
Q 016668 304 -YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAV 344 (385)
Q Consensus 304 -gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~ 344 (385)
..++++.|++|++ +|.|.|++++++ ++.+.+....
T Consensus 240 ~~~~I~i~SfSK~~g~~GlRiG~ii~~~------~l~~~l~~~~ 277 (410)
T PRK06290 240 KEVGVEIHSLSKAYNMTGWRLAFVVGNE------LIVKAFATVK 277 (410)
T ss_pred cccEEEEeechhhcCCchhheEeEEeCH------HHHHHHHHHH
Confidence 2348899999997 788999999877 5767666544
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-16 Score=157.66 Aligned_cols=238 Identities=16% Similarity=0.101 Sum_probs=155.0
Q ss_pred hhhcccCChHHHHHHHHHHHHhh----hccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQF----KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~----~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~ 153 (385)
++++....+..+..+.....+.+ ..+++-..++ .+++.+.+++...+.+....+|+. .|.+ ++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~~----~G~~---~lr~ai 78 (399)
T PRK07681 6 ATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYTL----SGIQ---EFHEAV 78 (399)
T ss_pred hHHHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCCC----CCcH---HHHHHH
Confidence 34455455555555444433221 3355543333 468889998887654321123331 3544 677777
Q ss_pred HHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
++++.+.+|.+.+ +..+|.+++|+ +|+..++.++++|||+|++++|.|.++.. .+...|..+ ++++++
T Consensus 79 a~~~~~~~g~~~~-~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~--------~~~~~G~~~--~~v~~~ 147 (399)
T PRK07681 79 TEYYNNTHNVILN-ADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYET--------GIQMAGATS--YYMPLK 147 (399)
T ss_pred HHHHHHHhCCCCC-CCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHH--------HHHhcCCEE--EEEecC
Confidence 7788877776432 10146667776 59988999999999999999997765432 234567644 444465
Q ss_pred CCC-CCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcc-cCC--CC
Q 016668 233 EST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADP--FK 303 (385)
Q Consensus 233 ~~~-~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~p--~~ 303 (385)
+++ +.+|++++++.+.. ++|+|+++.|+|| ...+ +++|.++|+++|++||+|+++ ..+...+.. ++. ++
T Consensus 148 ~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~ 225 (399)
T PRK07681 148 KENDFLPDLELIPEEIAD-KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAY-AEFYFDGNKPISFLSVP 225 (399)
T ss_pred CCCCCcCCHHHHHHhccc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccc-hhheeCCCCCCChhhCC
Confidence 443 47899999888754 7899998877877 3445 778889999999999999997 455543321 111 12
Q ss_pred C-C--cEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 304 Y-C--DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 304 g-a--Div~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+ . .|++.|++|++ +|.|.|++++++ ++.+++...
T Consensus 226 ~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~------~l~~~~~~~ 264 (399)
T PRK07681 226 GAKEVGVEINSLSKSYSLAGSRIGYMIGNE------EIVRALTQF 264 (399)
T ss_pred CCcccEEEEeecccccCCccceeEEEecCH------HHHHHHHHH
Confidence 2 1 36789999987 688999999876 566666543
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=158.65 Aligned_cols=190 Identities=12% Similarity=0.078 Sum_probs=135.7
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHD 193 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pGD 193 (385)
++..++++...+..... ++..+...++| +++++++|.++ .+.+.||+.|+..++.++ ++|||
T Consensus 10 ~~~e~~a~~~~~~~~~~--------~~~g~~~~~~e----~~la~~~g~~~-----~v~~~sgt~aL~~~l~al~~~pGd 72 (376)
T TIGR02379 10 TGQELEYIAEAISEGKL--------SGDGPFSRRCE----TWLENRTGTKK-----ALLTPSCTAALEMAALLLDIQPGD 72 (376)
T ss_pred CHHHHHHHHHHHHcCCc--------cCCcHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCcC
Confidence 45557777666543221 11123344555 46788899876 366778889999888888 89999
Q ss_pred EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHH
Q 016668 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQ 273 (385)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ 273 (385)
+|+++++.|.+.. ..+...|..+. .++++++++.+|++++++.++. ++|+|+... .+|...|+++|.+
T Consensus 73 ~Viv~~~t~~~~~--------~~~~~~G~~~v--~vd~d~~~~~~d~~~le~~i~~-~tk~Iip~~-~~G~~~d~~~I~~ 140 (376)
T TIGR02379 73 EVIMPSYTFVSTA--------NAFVLRGAKIV--FVDIRPDTMNIDETLIESAITH-RTKAIVPVH-YAGVACDMDTIMA 140 (376)
T ss_pred EEEECCCCcHHHH--------HHHHHcCCEEE--EEecCCCcCCCCHHHHHHhcCc-CceEEEEeC-CCCCccCHHHHHH
Confidence 9999988664432 13345676544 4456666678999999999865 789987654 3678889999999
Q ss_pred HHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCcc--C-ccccEEEEEEeCCCCchhHHHHHHh
Q 016668 274 IADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKS--L-RGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 274 ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~--l-~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
+|+++|++||.|++|+.|....+. ++. ..|+.++|+|++ + +|++||+|+++++ ++.+++.
T Consensus 141 la~~~~i~vIeDaa~~~g~~~~~~---~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~-----~~~~~~~ 204 (376)
T TIGR02379 141 LANKHQLFVIEDAAQGVMSTYKGR---ALGSIGHLGTFSFHETKNYTSGGEGGALLINDQ-----AFIERAE 204 (376)
T ss_pred HHHHCCCEEEEECccccCCccCCc---ccCCCCCEEEEeCCCCCcCcccCCceEEEECCH-----HHHHHHH
Confidence 999999999999999877543332 233 458889998854 4 6789999999876 5666554
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=158.42 Aligned_cols=241 Identities=16% Similarity=0.136 Sum_probs=153.2
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-- 189 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all-- 189 (385)
..+.+.+.+++...+.. . .+.++ .+.|.. .+++.+++++++++|+++++ .+.+.+|+.++..++.++.
T Consensus 30 ~~~~~~~~~a~~~~~~~-~-~~~~~--~~~~~~---~~~~~~~~~la~~~g~~~~~---~~~~~g~~~~~~~~~~~~~~~ 99 (373)
T TIGR03812 30 TNPHPIAVKAYDMFIET-N-LGDPG--LFPGTK---KIEEEVVGSLGNLLHLPDAY---GYIVSGGTEANIQAVRAAKNL 99 (373)
T ss_pred CCchHHHHHHHHHHhhc-C-CCCcc--cCccHH---HHHHHHHHHHHHHhCCCCCC---eEEeccHHHHHHHHHHHHHHH
Confidence 34566677877655432 2 24443 234433 55666788999999998641 3456677778887776653
Q ss_pred ----cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCC-cEEEEcC-CCCC
Q 016668 190 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP-KLIIAGA-SAYP 263 (385)
Q Consensus 190 ----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~p-klIi~~~-s~~~ 263 (385)
++||+|+++++.|. ++. ..+...|..+..++ ++ +++.+|++++++.+++ ++ +++++.+ +.+|
T Consensus 100 ~~~~~~g~~vl~~~~~h~---~~~-----~~~~~~G~~~~~v~--~~-~~~~~d~~~l~~~l~~-~~~~vv~~~~~~~tG 167 (373)
T TIGR03812 100 AREEKRTPNIIVPESAHF---SFE-----KAAEMLGLELRYAP--LD-EDYTVDVKDVEDLIDD-NTIGIVGIAGTTELG 167 (373)
T ss_pred HhccCCCcEEEECCcchH---HHH-----HHHHHcCCeEEEEe--eC-CCCCcCHHHHHHHHhh-CcEEEEEECCCCCCC
Confidence 47899999887543 321 13456677665555 44 3578999999999865 44 4555542 2356
Q ss_pred CCCCHHHHHHHHHHcCcEEEEecccccccccc---Ccc--cCCC--CCCcEEEECCCccCccc-cEE-EEEEeCCCCchh
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVV--ADPF--KYCDVVTTTTHKSLRGP-RGG-MIFFKKDPVLGV 334 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~---g~~--~~p~--~gaDiv~~S~hK~l~Gp-rgG-~I~~~~~~~~~~ 334 (385)
...|+++|.++|+++|+++++|++|+.+.... +.. ...+ .++|++++|+||++.+| ++| +++.++
T Consensus 168 ~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~------ 241 (373)
T TIGR03812 168 QIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSK------ 241 (373)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCH------
Confidence 77899999999999999999999997543211 111 1122 27899999999986444 344 444444
Q ss_pred HHHHHHhhccCCC--------ccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhc
Q 016668 335 ELESAINNAVFPG--------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSAC 381 (385)
Q Consensus 335 ~~~~~i~~~~fp~--------~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~ 381 (385)
++.+.+.... +. .+|+++...++++..+++.+..+++++..+++.+
T Consensus 242 ~~~~~l~~~~-~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~ 295 (373)
T TIGR03812 242 SYLKYLSVDA-PYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECME 295 (373)
T ss_pred HHHhhhcccC-cccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4555553211 11 1245666778888888887766666555555443
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=157.55 Aligned_cols=238 Identities=17% Similarity=0.146 Sum_probs=152.1
Q ss_pred hcccCChHHHHHHHHHHHHhh----hcccccc--CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 82 SLGEADPEVCEIITKEKERQF----KSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 82 ~l~~~dp~~~~~i~~e~~~~~----~~l~Lia--sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
++.+..+..+..+.+...+.. .-++|-. +...+++.+.+++...+......+|+. ..|.+ +|++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~---~lr~aia~ 81 (389)
T PRK08068 8 LLKQLPKQFFASLVAKVNKKVAEGHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSP---FRGYP---FLKEAAAD 81 (389)
T ss_pred HhhhcCccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCCCH---HHHHHHHH
Confidence 344445544444434333321 2244442 233346778888877654332234432 23444 78877778
Q ss_pred HHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC
Q 016668 156 RALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (385)
Q Consensus 156 ~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (385)
++.+.+|.+.+ +.-+|..++| ++++..++.++++|||+|++++|.|+.+.. .+...|..+..++ ++++
T Consensus 82 ~~~~~~g~~~~-~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~~~i~--~~~~ 150 (389)
T PRK08068 82 FYKREYGVTLD-PETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLS--------GVALARAQFETMP--LIAE 150 (389)
T ss_pred HHHHHhCCCCC-CCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCCEEEEee--cccc
Confidence 88777785431 1113445555 568888889999999999999997765432 2346676555444 5544
Q ss_pred -CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCccc-CCCC--C-
Q 016668 235 -TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK--Y- 304 (385)
Q Consensus 235 -~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~-~p~~--g- 304 (385)
+..+|++++++.+.. ++|+|+++.|+|| ...+ +++|.++|+++|+++|+|+++ ..+.+.+..+ +.+. +
T Consensus 151 ~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay-~~~~~~~~~~~s~~~~~~~ 228 (389)
T PRK08068 151 NNFLPDYTKIPEEVAE-KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAY-GAIGFDGQKPVSFLQTPGA 228 (389)
T ss_pred cCCCCCHHHHHHhccc-cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhh-hhhccCCCCCcChhhCCCc
Confidence 347899999988854 7899988877877 3444 567888999999999999996 3444433211 2122 1
Q ss_pred --CcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhcc
Q 016668 305 --CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAV 344 (385)
Q Consensus 305 --aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~ 344 (385)
-.+++.|++|+| +|.|.|+++.++ ++.+.+....
T Consensus 229 ~~~~i~~~S~SK~~g~~GlRiG~~~~~~------~l~~~l~~~~ 266 (389)
T PRK08068 229 KDVGIELYTLSKTFNMAGWRVAFAVGNE------SVIEAINLLQ 266 (389)
T ss_pred cCCEEEEecchhccCCccceeEeEecCH------HHHHHHHHHH
Confidence 227889999997 788999999877 5777665543
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-16 Score=155.22 Aligned_cols=206 Identities=16% Similarity=0.066 Sum_probs=139.5
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKP 191 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~p 191 (385)
.+++.+.+++.+.+.+.....|+. ..|.+ ++++.+++++.+.+|..... -+|.+++| ++|+..++.++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~ 113 (386)
T PRK07550 42 PPPPELLRALAEAAADPAAHLYGP---VEGLP---ELREAYAAHYSRLYGAAISP--EQVHITSGCNQAFWAAMVTLAGA 113 (386)
T ss_pred CCCHHHHHHHHHHHhCcCCcCCCC---CCCCH---HHHHHHHHHHHHHhCCCCCc--ceEEEecCcHHHHHHHHHHhcCC
Confidence 447788888877653222122322 23555 78888888888888864321 25666666 46999999999999
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC-
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD- 267 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d- 267 (385)
||+|++.+|.+.++.. .+...|..+. +++.+++ ++.+|++++++.++. ++|+|++..++||+ ..+
T Consensus 114 gd~Vlv~~p~y~~~~~--------~~~~~g~~~~--~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~P~NPtG~~~~~ 182 (386)
T PRK07550 114 GDEVILPLPWYFNHKM--------WLDMLGIRPV--YLPCDEGPGLLPDPAAAEALITP-RTRAIALVTPNNPTGVVYPP 182 (386)
T ss_pred CCEEEEcCCCCcchHH--------HHHhcCCEEE--EEecCCCcCCCCCHHHHHHHhcc-cCcEEEEeCCCCCCCcccCH
Confidence 9999999987755422 2345666444 4445533 457899999999865 78887776677763 343
Q ss_pred --HHHHHHHHHHcCcEEEEeccccccccccCccc-CCCC----CCc-EEEECCCccC--ccccEEEEEEeCCCCchhHHH
Q 016668 268 --YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELE 337 (385)
Q Consensus 268 --l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~-~p~~----gaD-iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~ 337 (385)
+++|.++|+++|+++|+|+++. ++...+..+ ..+. +.+ +++.|++|++ +|.|.|++++++ ++.
T Consensus 183 ~~~~~i~~~~~~~~~~iI~Dd~y~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~------~~~ 255 (386)
T PRK07550 183 ELLHELYDLARRHGIALILDETYR-DFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASP------ARI 255 (386)
T ss_pred HHHHHHHHHHHHcCeEEEEeccch-hhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCH------HHH
Confidence 7899999999999999999973 443322212 1221 122 6789999997 588999999977 566
Q ss_pred HHHhhcc
Q 016668 338 SAINNAV 344 (385)
Q Consensus 338 ~~i~~~~ 344 (385)
+.+....
T Consensus 256 ~~~~~~~ 262 (386)
T PRK07550 256 AEIEKFM 262 (386)
T ss_pred HHHHHHH
Confidence 6555443
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=162.64 Aligned_cols=227 Identities=16% Similarity=0.153 Sum_probs=145.4
Q ss_pred CCCCcHHHHHHHhhHhhccCCC-CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSE-GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~-g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all 189 (385)
-.+.++.+++++...+.+ |.. .|.-.....| +..+. +++.+++++|+++ .+.++||+.|+..++.+ +
T Consensus 95 ~s~l~~~v~eav~~~~~~-~~~le~~l~~g~~g-~r~~~----~e~~lA~l~Gae~-----a~vv~sgtaAl~l~l~~-l 162 (464)
T PRK04311 95 RALLSEAAIEAVTEAARG-YSNLEYDLATGKRG-SRDRA----LAALLCALTGAED-----ALVVNNNAAAVLLALNA-L 162 (464)
T ss_pred CCCCCHHHHHHHHHHHhc-ccccccchhhcccc-hHHHH----HHHHHHHHhCCCe-----EEEECCHHHHHHHHHHH-h
Confidence 345799999999877654 321 1100000112 21233 4567899999986 35678899999888755 6
Q ss_pred cCCCEEeecCCCC---CccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC----
Q 016668 190 KPHDRIMGLDLPH---GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY---- 262 (385)
Q Consensus 190 ~pGD~Vl~~~~~~---ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~---- 262 (385)
.+||+|++++.++ ||..... ..+...|..+. .++.+ +..+++++++.+++ ++++|++..+++
T Consensus 163 ~~GdeVIvs~~e~~~~ggs~~i~-----~~~~~~G~~l~--~v~~~---~~t~~~dle~aI~~-~TklV~~vh~sN~~i~ 231 (464)
T PRK04311 163 AAGKEVIVSRGELVEIGGAFRIP-----DVMRQAGARLV--EVGTT---NRTHLRDYEQAINE-NTALLLKVHTSNYRIE 231 (464)
T ss_pred CCCCEEEEcchhhhhcCcchhhH-----HHHHHCCcEEE--EECCC---CCCCHHHHHHhcCc-cCeEEEEEcCCCcccc
Confidence 8999999987543 2211110 12345566443 33332 34679999999975 688887654443
Q ss_pred --CCCCCHHHHHHHHHHcCcEEEEeccccccccc---------cCcccCCCC-CCcEEEECCCccCccccEEEEEEeCCC
Q 016668 263 --PRDFDYPRMRQIADAVGALLMMDMAHISGLVA---------ASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDP 330 (385)
Q Consensus 263 --~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~---------~g~~~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~ 330 (385)
....|+++|+++|+++|+++++|+++ |... ......+++ |+|++++|+||+|.||++|++++++
T Consensus 232 G~~~~~dl~eI~~lak~~gi~vivD~gs--G~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~-- 307 (464)
T PRK04311 232 GFTKEVSLAELAALGKEHGLPVVYDLGS--GSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKK-- 307 (464)
T ss_pred ccCCcCCHHHHHHHHHHcCCeEEEECCC--cccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcH--
Confidence 24579999999999999999999953 3221 111123444 8999999999999999999999987
Q ss_pred CchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhC
Q 016668 331 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 331 ~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~ 369 (385)
++.+++.+...--.. ...-.+++++..+|.....
T Consensus 308 ----~li~~l~~~~~~r~l-r~dk~~l~~l~~~l~~~~~ 341 (464)
T PRK04311 308 ----ELIARLKKHPLKRAL-RVDKLTLAALEATLRLYLD 341 (464)
T ss_pred ----HHHHHHhhchhHHHH-hcchHHHHHHHHHHHHHhC
Confidence 566666532111000 1234567777777775544
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=160.31 Aligned_cols=208 Identities=13% Similarity=0.102 Sum_probs=143.2
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKP 191 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~p 191 (385)
.+++.+.+++...+.+....+|+. ..|.+ ++++.+++++++.+|.+.+ +.-+|..++| ++|+..++.++++|
T Consensus 53 ~p~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~LR~aia~~l~~~~g~~~~-~~~~I~it~Ga~~al~~~~~~l~~~ 125 (405)
T PRK06207 53 EPTPGAFELFSAGVERGGVQAYTE---YRGDA---DIRELLAARLAAFTGAPVD-AADELIITPGTQGALFLAVAATVAR 125 (405)
T ss_pred CCCHHHHHHHHHHHhcCCCccCCC---CCCCH---HHHHHHHHHHHHHhCCCCC-CCCCEEEeCCcHHHHHHHHHHhcCC
Confidence 356788888877665432335554 23554 6888888899999996421 1013555565 56999999999999
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEeccc-cC-CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DE-STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD 267 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~-~~-~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d 267 (385)
||+|++.+|.|.++.. .+...|..+..++++. ++ +++.+|+++|++.++. ++|+|+++.|+||+ ..+
T Consensus 126 Gd~Vlv~~P~y~~~~~--------~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s 196 (405)
T PRK06207 126 GDKVAIVQPDYFANRK--------LVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA-GVRVFLFSNPNNPAGVVYS 196 (405)
T ss_pred CCEEEEeCCCchhHHH--------HHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh-cCeEEEECCCCCCCCcCCC
Confidence 9999999997755421 3345666554444321 11 2457999999998865 68988888888873 444
Q ss_pred ---HHHHHHHHHHcCcEEEEeccccccccccCc-ccCCC--C-CCc--EEEECCCccC--ccccEEEEEEeCCCCchhHH
Q 016668 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF--K-YCD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVEL 336 (385)
Q Consensus 268 ---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p~--~-gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~ 336 (385)
+++|.++|+++|++||+|+++ ..+.+.+. ++... . ..| +++.|++|++ +|.|.|++++++ ++
T Consensus 197 ~e~l~~l~~~a~~~~~~iI~De~Y-~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~------~l 269 (405)
T PRK06207 197 AEEIAQIAALARRYGATVIVDQLY-SRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSP------AI 269 (405)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccc-cccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCH------HH
Confidence 778899999999999999996 45554432 22211 2 123 6889999997 699999999887 56
Q ss_pred HHHHhhc
Q 016668 337 ESAINNA 343 (385)
Q Consensus 337 ~~~i~~~ 343 (385)
.+++...
T Consensus 270 ~~~~~~~ 276 (405)
T PRK06207 270 IDRMEKL 276 (405)
T ss_pred HHHHHHH
Confidence 6666543
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-16 Score=156.44 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=155.7
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhccccc--cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQFKSLELI--ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~~~l~Li--asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~l 157 (385)
++++...++.++..+.+.... ...++|- .++...++.+.+++...+.+.. .+|+. ..|.+ ++++..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~-~~Y~~---~~G~~---~lr~~ia~~~ 76 (387)
T PRK08912 5 NPVFADLPTTIFEVMSQLARE-HGAINLGQGFPDDPGPEDVRRAAADALLDGS-NQYPP---MMGLP---ELRQAVAAHY 76 (387)
T ss_pred hHHHhhCCCCHHHHHHHHHhh-CCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCcH---HHHHHHHHHH
Confidence 445666667666655554332 1334443 2344456778887766554322 23544 23544 6777778888
Q ss_pred HHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC
Q 016668 158 LAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (385)
Q Consensus 158 a~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 236 (385)
.+.+|.+.+ +..+|..++| +.|+..++.++++|||+|++.+|.|.++.. .+...|..+..++ ++++++
T Consensus 77 ~~~~g~~~~-~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~~~--~~~~~~ 145 (387)
T PRK08912 77 ARFQGLDLD-PETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLP--------LIRRAGGVPRLVR--LEPPHW 145 (387)
T ss_pred HHHhCCCCC-CcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCCEEEEEe--cCcccC
Confidence 888886432 2113555555 569999999999999999999987654321 3356676555444 554457
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCc-ccCC--CC---CC
Q 016668 237 LVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FK---YC 305 (385)
Q Consensus 237 ~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p--~~---ga 305 (385)
.+|++++++.+.. ++|+|++..++||+ ..+ +++|.++|+++|+++|+|+++. .+.+.+. .+.. +. ..
T Consensus 146 ~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~ 223 (387)
T PRK08912 146 RLPRAALAAAFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWE-HVVFDGRRHIPLMTLPGMRER 223 (387)
T ss_pred cCCHHHHHHHhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhh-hcccCCCCCcChhhCCCccCc
Confidence 8999999998864 78988888777763 444 7779999999999999999974 4444331 1111 11 23
Q ss_pred cEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 306 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 306 Div~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
++++.|++|.+ +|.|.|++++++ ++.+.+...
T Consensus 224 ~i~~~S~SK~~g~~GlRiG~~~~~~------~~~~~l~~~ 257 (387)
T PRK08912 224 TVKIGSAGKIFSLTGWKVGFVCAAP------PLLRVLAKA 257 (387)
T ss_pred eEEEeechhhccCcCceeEEEecCH------HHHHHHHHH
Confidence 58899999996 678899999987 566665443
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=167.39 Aligned_cols=168 Identities=23% Similarity=0.264 Sum_probs=124.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|...|| +++..+++|+ ++++++|+++. +.+.||+.|+..++.++++|||+|+++++.|+++.....
T Consensus 56 ~~~y~r~--~~p~~~~Le~----~lA~l~G~~~~-----~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~-- 122 (398)
T PRK07504 56 GFIYSRY--SNPTVDMFEK----RMCALEGAEDA-----RATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVE-- 122 (398)
T ss_pred CceeecC--CCchHHHHHH----HHHHHhCCCee-----eEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHH--
Confidence 3444444 5566667775 68899999873 347799999998888899999999999988776532100
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
......|.. +..+ + .+|++++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|++|..
T Consensus 123 --~~~~~~G~~--v~~v--d----~~d~e~l~~ai~~-~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~ 191 (398)
T PRK07504 123 --TLLPRYGIE--STLV--D----GLDLDNWEKAVRP-NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFAT 191 (398)
T ss_pred --HHHhhcCeE--EEEE--C----CCCHHHHHHhcCc-CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccc
Confidence 011234543 3332 2 3799999998864 7899999888875 578999999999999999999999876
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCccc--c-EEEEEEeCC
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKD 329 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gp--r-gG~I~~~~~ 329 (385)
++. ..+++ ++|++++|+||++.|+ + ||+++++++
T Consensus 192 ~~~-----~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~ 229 (398)
T PRK07504 192 PLF-----QKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKA 229 (398)
T ss_pred ccc-----CCchhhCCCEEEeeccccccCCccceEEEEEeCcH
Confidence 543 34556 8999999999999664 3 578888774
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=166.40 Aligned_cols=166 Identities=14% Similarity=0.053 Sum_probs=126.6
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccc
Q 016668 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (385)
Q Consensus 134 ~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (385)
|-+.|. ||++.+.||+ +++++.|.+. .+.+.||+.|+.+++.+++++||+|++.+..|++.....
T Consensus 54 ~~YsR~--~nPt~~~le~----~la~LEg~~~-----a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~---- 118 (395)
T PRK08114 54 LFYGRR--GTLTHFSLQE----AMCELEGGAG-----CALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFC---- 118 (395)
T ss_pred ccccCC--CChhHHHHHH----HHHHHhCCCe-----EEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHH----
Confidence 445543 8999998887 5788889876 366788999999999999999999999877665532110
Q ss_pred ccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcC--cEEEEecccc
Q 016668 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVG--ALLMMDMAHI 289 (385)
Q Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~g--a~livD~ah~ 289 (385)
...+...|..+..+ + ..|.+++++.+++ ++|+|++..+.++ ...|+++|+++||++| +++++|++++
T Consensus 119 ~~~l~~~Gi~v~~v--d------~~d~~~l~~~l~~-~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a 189 (395)
T PRK08114 119 SKILSKLGVTTTWF--D------PLIGADIAKLIQP-NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWA 189 (395)
T ss_pred HHHHHhcCcEEEEE--C------CCCHHHHHHhcCC-CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCc
Confidence 01123346544332 2 2478999999865 7899999888776 5689999999999984 9999999997
Q ss_pred ccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeC
Q 016668 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (385)
Q Consensus 290 ~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~ 328 (385)
.++. ..|++ |+|++++|.||++.|+. +|+++.++
T Consensus 190 ~p~~-----~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~ 227 (395)
T PRK08114 190 AGVL-----FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANA 227 (395)
T ss_pred cccc-----cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCH
Confidence 7654 46777 99999999999999984 57666555
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=164.01 Aligned_cols=166 Identities=17% Similarity=0.110 Sum_probs=123.4
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccc
Q 016668 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (385)
Q Consensus 134 ~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (385)
|.+.| .|++..+.||+ .++++.|.+. .+.+.||+.|+..++.++++|||+|+++++.|++... ..
T Consensus 42 ~~Y~r--~gnPt~~~lE~----~lA~l~g~~~-----~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~--~~-- 106 (377)
T TIGR01324 42 LTYGR--RGTLTHFALQD----AMCELEGGAG-----CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRY--FC-- 106 (377)
T ss_pred CcccC--CCCccHHHHHH----HHHHHhCCCc-----EEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHH--HH--
Confidence 33444 38888888886 5788999876 3667899999999999999999999999887654211 00
Q ss_pred ccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccccc
Q 016668 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~G 291 (385)
.......|..+. .++.+ +.+.+++.+++ ++|+|+++.++++ ...|+++|+++|+++|+++++|++|..|
T Consensus 107 ~~~~~~~gi~v~--~~d~~------~~e~l~~~i~~-~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g 177 (377)
T TIGR01324 107 DIVLKRMGVDIT--YYDPL------IGEDIATLIQP-NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAG 177 (377)
T ss_pred HHHHHhcCcEEE--EECCC------CHHHHHHhcCC-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 001223454333 32211 23788888865 7899999877765 5679999999999999999999999877
Q ss_pred ccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeC
Q 016668 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (385)
Q Consensus 292 li~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~ 328 (385)
... .|++ ++|++++|+||++.|+. ||++++++
T Consensus 178 ~~~-----~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~ 213 (377)
T TIGR01324 178 LLF-----KPLEHGVDISIQAGTKYLVGHSDIMIGTVVANA 213 (377)
T ss_pred ccc-----CccccCceEEEecCceeccCCCCceEEEEEeCH
Confidence 542 4566 89999999999998874 68888776
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-16 Score=156.82 Aligned_cols=234 Identities=15% Similarity=0.135 Sum_probs=151.8
Q ss_pred hcccCChHHHHHHHHHHHHhhhccccc--cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 016668 82 SLGEADPEVCEIITKEKERQFKSLELI--ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA 159 (385)
Q Consensus 82 ~l~~~dp~~~~~i~~e~~~~~~~l~Li--asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~ 159 (385)
++..++++++.-+.+..... ..++|- .++...++.+.+++...+.... .+|+. ..|.+ ++++.+.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~g~~---~lr~~ia~~~~~ 76 (387)
T PRK07777 5 RLRPFGTTIFAEMSALAVRT-GAVNLGQGFPDEDGPPEMLEAAQEAIAGGV-NQYPP---GPGIP---ELRAAIAAQRRR 76 (387)
T ss_pred hhhhcCccHHHHHHHHHhhC-CeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCCH---HHHHHHHHHHHH
Confidence 45566666665554444322 334544 2333445667777666554322 23433 12444 788777788888
Q ss_pred HcCCCCCCCcceeecCC-cHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC--CC
Q 016668 160 AFNLDENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TG 236 (385)
Q Consensus 160 lfg~~~~~~~~~V~~~s-Gs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~--~~ 236 (385)
.+|.+.+ +.-+|..++ |+.|+.+++.++++|||+|++..|.|.++. ..+...|..+..++ ++++ ++
T Consensus 77 ~~g~~~~-~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~--------~~~~~~g~~~~~~~--~~~~~~~~ 145 (387)
T PRK07777 77 RYGLEYD-PDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYA--------AVIAMAGAHRVPVP--LVPDGRGF 145 (387)
T ss_pred HhCCCCC-CCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH--------HHHHHCCCEEEEee--cCCccCCC
Confidence 8888642 111244455 566999999999999999999988665432 12345566544444 4433 45
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC---C---CC
Q 016668 237 LVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K---YC 305 (385)
Q Consensus 237 ~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~---ga 305 (385)
.+|++++++.+.+ ++|+|+++.++||+ .. ++++|.++|+++|+++|+|+++ .++.+.+....++ . +.
T Consensus 146 ~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~ 223 (387)
T PRK07777 146 ALDLDALRAAVTP-RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVY-EHLVFDGARHLPLATLPGMRER 223 (387)
T ss_pred cCCHHHHHHhcCc-ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccc-hhcccCCCCcccHhhCCCCcCc
Confidence 7999999998864 78999888777763 33 4889999999999999999997 4555433211122 1 24
Q ss_pred cEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 306 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 306 Div~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
++++.|++|+| +|.|.|++++++ ++.+.+..
T Consensus 224 ~i~~~S~SK~~g~~GlRiG~~~~~~------~l~~~~~~ 256 (387)
T PRK07777 224 TVTISSAAKTFNVTGWKIGWACGPA------PLIAAVRA 256 (387)
T ss_pred EEEEeechhhccCcCceeEEEecCH------HHHHHHHH
Confidence 58899999997 578889999877 56665544
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=166.56 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=125.6
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccc
Q 016668 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (385)
Q Consensus 134 ~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (385)
|.+.|| |++..+++|+ ++++++|.+. .+.+.||+.|+..++.++++|||+|++.+..|++.... +
T Consensus 62 ~~Y~r~--~~p~~~~le~----~lA~l~g~~~-----al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~-~--- 126 (403)
T PRK07810 62 FVYSRY--GNPTVSMFEE----RLRLIEGAEA-----CFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVV-C--- 126 (403)
T ss_pred cceeCC--CCchHHHHHH----HHHHHhCCCc-----EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHH-H---
Confidence 334443 6677777776 5889999876 47789999999999999999999999988666543210 0
Q ss_pred ccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccccc
Q 016668 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~G 291 (385)
...+...|..+..+ +. .|++++++.+++ ++|+|+++.+++| ...|+++|+++|+++|+++++|++|..+
T Consensus 127 ~~~~~~~G~~v~~v--d~------~d~~~l~~ai~~-~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 127 NEILPRWGVETVFV--DG------EDLSQWEEALSV-PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred HHHHHHcCcEEEEE--CC------CCHHHHHHhcCc-CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 01233456544333 22 389999999865 7899999877765 5679999999999999999999998766
Q ss_pred ccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCC
Q 016668 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (385)
Q Consensus 292 li~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~ 329 (385)
+. ..+++ ++|++++|+||++.|+- ||+|+++++
T Consensus 198 ~~-----~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~ 234 (403)
T PRK07810 198 LL-----QRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDRE 234 (403)
T ss_pred cc-----CChhhcCCcEEEccCCceecCCcCceeEEEEeChH
Confidence 43 23455 89999999999997643 688888874
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=176.05 Aligned_cols=200 Identities=16% Similarity=0.102 Sum_probs=146.8
Q ss_pred HHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecc
Q 016668 152 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (385)
Q Consensus 152 ~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~ 230 (385)
.+++.++++||++.. .+.++|| .+|.++++++++|||+|++.. ++|.|.- ..+.+.|....++.-.
T Consensus 209 eAq~~aA~~fgA~~t-----~FlvNGST~gn~a~i~a~~~~gd~Vlv~R---N~HKSv~-----~al~L~ga~Pvyl~P~ 275 (755)
T PRK15029 209 ESEKYAARVFGADRS-----WSVVVGTSGSNRTIMQACMTDNDVVVVDR---NCHKSIE-----QGLILTGAKPVYMVPS 275 (755)
T ss_pred HHHHHHHHHhCCCcE-----EEEeCChhHHHHHHHHHhcCCCCEEEeec---ccHHHHH-----HHHHHcCCeEEEeccc
Confidence 467789999999984 3445666 599999999999999999876 4665532 1456777765555322
Q ss_pred ccCCCC---CCC-----HHHHHHHhhhc---------CCcEEEE-cCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccc
Q 016668 231 LDESTG---LVD-----YDMLEKTAILF---------RPKLIIA-GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGL 292 (385)
Q Consensus 231 ~~~~~~---~iD-----~d~le~~i~~~---------~pklIi~-~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gl 292 (385)
.+ +.| .++ ++.+++.++.+ +|+++++ +++.+|...|+++|+++|+++|+.|++|+||++.+
T Consensus 276 ~~-~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~ 354 (755)
T PRK15029 276 RN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_pred cc-ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECcccccc
Confidence 32 233 355 89999888653 2335555 45557899999999999999999999999999887
Q ss_pred cccCccc--CCC-------CCCc-EEEECCCccCccc-cEEEEEEeCC--CCchhHHHHHHhhccCCCccCCChHHHHHH
Q 016668 293 VAASVVA--DPF-------KYCD-VVTTTTHKSLRGP-RGGMIFFKKD--PVLGVELESAINNAVFPGLQGGPHNHTIGG 359 (385)
Q Consensus 293 i~~g~~~--~p~-------~gaD-iv~~S~hK~l~Gp-rgG~I~~~~~--~~~~~~~~~~i~~~~fp~~qg~p~~~~iaa 359 (385)
.+...+| +++ .|+| +++.|+||+|++. ++++|..+.+ .+ + .++++.+......++|++..+|+
T Consensus 355 ~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~i---d-~~r~~~~l~~~qSTSPSY~LmAS 430 (755)
T PRK15029 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAI---N-FSRFNQAYMMHATTSPLYAICAS 430 (755)
T ss_pred ccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCcccc---C-HHHHHHHHHHHcCCCcHHHHHHH
Confidence 7665554 455 3788 8999999999887 5578877554 11 1 24566554444456899999999
Q ss_pred HHHHHHHhhC
Q 016668 360 LAVCLKHAQS 369 (385)
Q Consensus 360 la~Al~e~~~ 369 (385)
+.+|.+.+..
T Consensus 431 LD~ar~~m~~ 440 (755)
T PRK15029 431 NDVAVSMMDG 440 (755)
T ss_pred HHHHHHHHhh
Confidence 9999988765
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-16 Score=155.05 Aligned_cols=236 Identities=17% Similarity=0.148 Sum_probs=154.1
Q ss_pred cccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHH
Q 016668 107 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (385)
Q Consensus 107 Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~ 186 (385)
+.|....+++.|++++.... +++ ...+. ++.+..++.+++++|+++... ..+.+.+||.++..++.
T Consensus 3 ~~p~p~~~~~~~~~~~~~~~-~~~-----------~~~~~-~~~~~~~~~la~~~~~~~~~~-~i~~~~~gt~~l~~~~~ 68 (355)
T TIGR03301 3 LTPGPLSTSATVRDAMLVDW-CHW-----------DSEFN-DVTDQVRDRLLALAGGDDNHT-CVLLQGSGTFAVEATIG 68 (355)
T ss_pred CcCCCCCCCHHHHHHhhhhc-cCC-----------CHHHH-HHHHHHHHHHHHHhcCCCCCc-EEEEeCCcHHHHHHHHH
Confidence 45778888999999988632 111 11222 333346788999999986321 12346788899999999
Q ss_pred HhccCCCEEeecCCC-CCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-CCcEEEEcCC--CC
Q 016668 187 AILKPHDRIMGLDLP-HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGAS--AY 262 (385)
Q Consensus 187 all~pGD~Vl~~~~~-~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-~pklIi~~~s--~~ 262 (385)
+++++||++++.++. ++.... ..+...|..+..++ .+ +++.+|++++++.+++. ++++|++..+ .+
T Consensus 69 ~~~~~~~~vi~~~~~~~~~~~~-------~~a~~~g~~~~~i~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~ 138 (355)
T TIGR03301 69 SLVPRDGKLLVLINGAYGERLA-------KICEYLGIPHTDLN--FS-EYEPPDLNRIEEALAADPDITHVATVHHETTT 138 (355)
T ss_pred hccCCCCeEEEECCCchhhHHH-------HHHHHcCCceEEEe--cC-CCCCCCHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 999999987765532 221100 12234566555554 43 24679999999998652 3455554333 34
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~ 339 (385)
+...|+++|.++|+++|+++++|++|+.|.. +.++. +.|++++|+||++.||.| |+++++++ +.+.
T Consensus 139 G~~~~~~~i~~l~~~~~~~livD~~~s~g~~-----~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~------~~~~ 207 (355)
T TIGR03301 139 GILNPLEAIAKVARSHGAVLIVDAMSSFGAI-----PIDIEELDVDALIASANKCLEGVPGFGFVIARRD------LLEA 207 (355)
T ss_pred cchhHHHHHHHHHHHcCCEEEEEeccccCCc-----ccchhhcCccEEEecCCcccccCCceeEEEECHH------HHHH
Confidence 6778999999999999999999998866532 22233 689999999999977766 89988874 4444
Q ss_pred HhhccC----------------CCccCCChHHHHHHHHHHHHHhhCch-HHHHHH
Q 016668 340 INNAVF----------------PGLQGGPHNHTIGGLAVCLKHAQSPE-FKVYQN 377 (385)
Q Consensus 340 i~~~~f----------------p~~qg~p~~~~iaala~Al~e~~~~~-~~~y~~ 377 (385)
+..... .....+++...+.++..+++.+..++ +.+..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~ 262 (355)
T TIGR03301 208 SAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIA 262 (355)
T ss_pred hhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 331100 01123567778888888888776554 443333
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=166.32 Aligned_cols=167 Identities=20% Similarity=0.235 Sum_probs=124.1
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+++|+ .+++++|.++ .+.++||+.|+..++.++++|||+|++..+.|++..... ...+...|
T Consensus 63 ~~p~~~~le~----~lA~l~g~~~-----~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~----~~~~~~~G 129 (403)
T PRK07503 63 SNPTLALLEQ----RMASLEGGEA-----AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFL----HHGLGEFG 129 (403)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHH----HHHHhhCC
Confidence 4566667765 6889999976 367889999999999999999999999988775432200 01223455
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+. .++. .|++++++.+++ ++|+|++..+++| ...|+++|.++|+++|+++++|++|..+.. .
T Consensus 130 ~~v~--~vd~------~d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~-----~ 195 (403)
T PRK07503 130 VTVR--HVDL------TDPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYL-----Q 195 (403)
T ss_pred EEEE--EeCC------CCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 5433 3222 378999998865 7899998777665 577999999999999999999999865532 2
Q ss_pred CCCC-CCcEEEECCCccCccc---cEEEEEEeCCCCchhHHHHHHh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~~~~~i~ 341 (385)
.++. ++|++++|++|++.|+ +||+++.++ ++.+++.
T Consensus 196 ~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~------~l~~~l~ 235 (403)
T PRK07503 196 RPLELGADLVVHSATKYLGGHGDITAGLVVGGK------ALADRIR 235 (403)
T ss_pred CchhhCCCEEEccccccccCCCceeEEEEEcCH------HHHHHHH
Confidence 4455 8999999999999775 478888655 5666664
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=165.37 Aligned_cols=167 Identities=19% Similarity=0.210 Sum_probs=125.2
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++...+||+ .+++++|.+. .+.+.||+.|+.+++.++++|||+|+++++.|++..... ...+...|
T Consensus 62 ~~p~~~~Le~----~iA~~~g~~~-----~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~----~~~~~~~G 128 (400)
T PRK06234 62 GNPTSTEVEN----KLALLEGGEA-----AVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALL----NHGLTRYG 128 (400)
T ss_pred CCccHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHH----HHHHhhCC
Confidence 4565667776 5788899764 467889999999999999999999999988776543210 01224456
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHc--CcEEEEeccccccccccCc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASV 297 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~ 297 (385)
..+. .++. .|++++++.+++ ++|+|+++.+++| ...|+++|.++|+++ |+++++|++|..+..
T Consensus 129 ~~v~--~vd~------~d~e~l~~~i~~-~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~---- 195 (400)
T PRK06234 129 VEVT--FVDT------SNLEEVRNALKA-NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYI---- 195 (400)
T ss_pred eEEE--EECC------CCHHHHHHHhcc-CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhc----
Confidence 5433 3322 389999998865 7899999888765 578999999999997 999999999866532
Q ss_pred ccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHh
Q 016668 298 VADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 298 ~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~ 341 (385)
..+++ ++|++++|++|++.|+. ||++++++ ++.+++.
T Consensus 196 -~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~------~~~~~l~ 236 (400)
T PRK06234 196 -QRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKE------EFINQVK 236 (400)
T ss_pred -CCchhhCCcEEEeeccccccCCCCceeEEEEecH------HHHHHHH
Confidence 24555 89999999999997653 69999887 4555554
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=164.50 Aligned_cols=174 Identities=22% Similarity=0.306 Sum_probs=126.4
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccc
Q 016668 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (385)
Q Consensus 134 ~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (385)
+...|| +++..+++|+ ++++++|++. .+.+.||+.|+.+++.++++|||+|++.++.|++.... +
T Consensus 46 ~~y~r~--~~p~~~~le~----~la~l~g~~~-----~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~-~--- 110 (380)
T TIGR01325 46 FVYSRY--ANPTVAAFEE----RIAALEGAER-----AVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGF-I--- 110 (380)
T ss_pred cceecC--CCchHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHH-H---
Confidence 444444 4565666765 6888999975 35688999999999999999999999988766653210 0
Q ss_pred ccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccccc
Q 016668 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~G 291 (385)
...+...|..+..++ . .|++++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|++|..+
T Consensus 111 ~~~~~~~g~~v~~v~--~------~d~~~l~~~i~~-~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~ 181 (380)
T TIGR01325 111 SEILPRFGIEVSFVD--P------TDLNAWEAAVKP-NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATP 181 (380)
T ss_pred HHHHHHhCCEEEEEC--C------CCHHHHHHhcCC-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 012234555443332 2 278999988864 7899999877765 5779999999999999999999998654
Q ss_pred ccccCcccCCCC-CCcEEEECCCccCccc---cEEEEEEeCCCCchhHHHHHHhh
Q 016668 292 LVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 292 li~~g~~~~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.. ..|++ ++|++++|+||++.|+ .||++++++ ++.+++..
T Consensus 182 ~~-----~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~------~~~~~l~~ 225 (380)
T TIGR01325 182 VL-----QQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSE------ELMAEVAV 225 (380)
T ss_pred cc-----CCchhhCCCEEEeeccceecCCCCeEEEEEEeCH------HHHHHHHH
Confidence 32 24566 8999999999999775 368888877 45555543
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=164.44 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=119.1
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
|++....||+ +++++.|.+. .+.+.||+.|+..++.++++|||+|+++++.|++..... ...+...|
T Consensus 59 ~npt~~~Le~----~iA~le~~~~-----~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~----~~~l~~~G 125 (394)
T PRK09028 59 GTPTHFAFQA----AIVELEGGAG-----TALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLC----DKILKGFG 125 (394)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHH----HHhhhhcc
Confidence 5666667775 5677777754 356788999999999999999999999998775543210 01122345
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+. .++. -|.+.+++.+++ ++|+|+++.++|| ...|+++|+++|+++|+++++|++|..++ ..
T Consensus 126 i~v~--~v~~------~~~e~l~~~l~~-~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~-----~~ 191 (394)
T PRK09028 126 IETT--YYDP------MIGEGIRELIRP-NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPI-----NS 191 (394)
T ss_pred eEEE--EECC------CCHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccc-----cC
Confidence 4333 2221 256788888864 7999999988887 46799999999999999999999997654 24
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeC
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~ 328 (385)
.|++ |+|+++.|.|||+.|+. +|+++.++
T Consensus 192 ~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~ 224 (394)
T PRK09028 192 RPFEMGVDISIQAATKYIVGHSDVMLGTATANE 224 (394)
T ss_pred CccccCceEEEEeCCeEecCCCCEEEEEEECCH
Confidence 6777 89999999999999984 57665554
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=159.22 Aligned_cols=198 Identities=20% Similarity=0.209 Sum_probs=132.8
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHc-CCCCCCCcceeecCCc-HHHHHHHHHHhcc
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLSG-SPANFEVYTAILK 190 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lf-g~~~~~~~~~V~~~sG-s~A~~~a~~all~ 190 (385)
.+++.+ +++...+.+.. .+|.. ..|.+ ++++. +++++ +++++ +|.+++| +.|+..++.++++
T Consensus 39 ~~~~~~-~~~~~~~~~~~-~~Y~~---~~G~~---~lr~~----ia~~~~~~~~~----~vi~t~G~~~al~~~~~~l~~ 102 (373)
T PRK07324 39 LAGKNP-EAFYQELGQKK-LTYGW---IEGSP---EFKEA----VASLYQNVKPE----NILQTNGATGANFLVLYALVE 102 (373)
T ss_pred ccCcch-HHHHHHHhcCC-ccCCC---CCCCH---HHHHH----HHHHhcCCChh----hEEEcCChHHHHHHHHHHhCC
Confidence 345555 55544443321 23433 23554 56654 45555 35553 4555555 5699999999999
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC-CCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d 267 (385)
|||+|++..|.+.++.. .+...|..+..++ +++++ +.+|++++++.+.. ++|+|+++.++|| ...+
T Consensus 103 ~gd~Vl~~~P~y~~~~~--------~~~~~g~~v~~v~--~~~~~~~~~d~~~l~~~~~~-~~kli~i~~p~NPtG~~~~ 171 (373)
T PRK07324 103 PGDHVISVYPTYQQLYD--------IPESLGAEVDYWQ--LKEENGWLPDLDELRRLVRP-NTKLICINNANNPTGALMD 171 (373)
T ss_pred CCCEEEEcCCCchhHHH--------HHHHcCCEEEEEe--cccccCCCCCHHHHHHhCCC-CCcEEEEeCCCCCCCCCCC
Confidence 99999999886544321 2345676555444 55433 46899999998864 7899999888876 4556
Q ss_pred ---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCC--cEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHH
Q 016668 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYC--DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 268 ---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~ga--Div~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i 340 (385)
+++|+++|+++|+++++|+++ .++...+..++..+.. .+++.|++|++ +|+|.|++++++ ++.+.+
T Consensus 172 ~~~l~~i~~~a~~~~~~ii~De~y-~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~------~li~~~ 244 (373)
T PRK07324 172 RAYLEEIVEIARSVDAYVLSDEVY-RPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANE------EVIDIL 244 (373)
T ss_pred HHHHHHHHHHHHHCCCEEEEEccc-cccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCH------HHHHHH
Confidence 889999999999999999996 5665544333333322 37889999986 689999999965 677777
Q ss_pred hhcc
Q 016668 341 NNAV 344 (385)
Q Consensus 341 ~~~~ 344 (385)
....
T Consensus 245 ~~~~ 248 (373)
T PRK07324 245 RKYR 248 (373)
T ss_pred HHHh
Confidence 6544
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-16 Score=158.63 Aligned_cols=232 Identities=15% Similarity=0.046 Sum_probs=148.1
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhcc
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILK 190 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~ 190 (385)
..+++.+++++.+.+......+|.. ..|.+ ++++...+++.+.+|.+.+ + .+|..++| ++|+..++.++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~~ia~~~~~~~g~~~~-~-~~i~~t~G~~~al~~~~~~l~~ 118 (409)
T PLN02656 47 FHTTHVAQEAVVDALQSNKFNGYAP---TVGLP---QARRAIAEYLSRDLPYKLS-L-DDVFITSGCTQAIDVALSMLAR 118 (409)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCC---CCCCH---HHHHHHHHHHHHhcCCCCC-c-ccEEEeCChHHHHHHHHHHHhC
Confidence 4668999999987766543334533 12444 6777667777776665421 1 14555555 5699999999999
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--C--
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--D-- 265 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~-- 265 (385)
|||+|++++|.|..+.. .....|..+..++ ++++ ++.+|++++++.++. ++++|++..++||+ .
T Consensus 119 ~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~i~--~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPtG~~~s 187 (409)
T PLN02656 119 PGANILLPRPGFPIYEL--------CAAFRHLEVRYVD--LLPEKGWEVDLDAVEALADQ-NTVALVIINPGNPCGNVYS 187 (409)
T ss_pred CCCeEEEeCCCCCcHHH--------HHHHcCCEEEEEe--CCCcCCCCCCHHHHHHHhcc-CceEEEEECCCCCCCCCCC
Confidence 99999999987654311 2345666555554 4433 457999999998854 67888777777764 3
Q ss_pred -CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CCCc--EEEECCCccC--ccccEEEEEEeCCCCc--hhH
Q 016668 266 -FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCD--VVTTTTHKSL--RGPRGGMIFFKKDPVL--GVE 335 (385)
Q Consensus 266 -~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~--~~~ 335 (385)
.++++|.++|+++|++||+|+++ .++.+.+....++ +..+ +++.|++|+| +|+|.|++++.++... -.+
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~ 266 (409)
T PLN02656 188 YQHLKKIAETAEKLKILVIADEVY-GHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPK 266 (409)
T ss_pred HHHHHHHHHHHHHcCCEEEEehhh-hhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHH
Confidence 35889999999999999999996 4666544221222 2222 5789999984 8899999998521000 014
Q ss_pred HHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 336 LESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 336 ~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
+.+++...... .++++.....+++.+++
T Consensus 267 ~~~~~~~~~~~--~~~~s~~~q~a~~~~l~ 294 (409)
T PLN02656 267 IVERIKKYFDI--LGGPATFIQAAVPTILE 294 (409)
T ss_pred HHHHHHHHHhh--hcCCCHHHHHHHHHHHh
Confidence 65655543222 12333334444455554
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=165.34 Aligned_cols=173 Identities=18% Similarity=0.152 Sum_probs=126.5
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccc
Q 016668 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (385)
Q Consensus 134 ~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (385)
+.+.|+ +++..+++|+ ++++++|.++ .+.++||+.|+..++.++++|||+|++..+.|++...- + .
T Consensus 55 ~~Y~r~--~~p~~~~le~----~lA~l~g~~~-----av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~-~-~- 120 (389)
T PRK05968 55 PIYSRG--DNPTVRAFEE----MLAKLEGAED-----ARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRL-F-E- 120 (389)
T ss_pred ccccCC--CChhHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHH-H-H-
Confidence 444443 5676777776 5889999986 36678999999999999999999999998877654220 0 0
Q ss_pred ccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccccc
Q 016668 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~G 291 (385)
..+...|..+..+ +. .|++++++.+ . ++|+|+++.+.++ ...|+++|.++|+++|+++++|++|..+
T Consensus 121 -~~~~~~G~~v~~v--d~------~d~~~l~~~i-~-~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 121 -TILKRMGVEVDYV--DG------RDEEAVAKAL-P-GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred -HHHHHcCceEEEe--CC------CCHHHHHHhc-c-cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcch
Confidence 1233456544332 22 3889999887 3 6899988776654 4578999999999999999999998665
Q ss_pred ccccCcccCCCC-CCcEEEECCCccCccc---cEEEEEEeCCCCchhHHHHHHhh
Q 016668 292 LVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 292 li~~g~~~~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.. ..|+. ++|++++|+||++.|| .||+++.++ ++.+++..
T Consensus 190 ~~-----~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~------~~~~~l~~ 233 (389)
T PRK05968 190 VF-----QRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSK------EHIARINA 233 (389)
T ss_pred hc-----cCchhcCCcEEEeeccccccCCCCeEEEEEEECH------HHHHHHHH
Confidence 42 23455 8999999999999886 578888766 56666654
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-17 Score=165.32 Aligned_cols=169 Identities=18% Similarity=0.174 Sum_probs=124.2
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..++||+ ++++++|.+. .+.+.||+.|+..++.++++|||+|++.++.|+++.... .. ......|
T Consensus 74 ~~Pt~~~LE~----~lA~l~g~~~-----~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~--~~-~~~~~~G 141 (418)
T PLN02242 74 FNPTVLNLGR----QMAALEGTEA-----AYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALL--AH-FLPRKCN 141 (418)
T ss_pred CChhHHHHHH----HHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHH--HH-hhhhccC
Confidence 6787888876 5889999987 356789999999999999999999999988776542200 00 0012245
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
.. +..++ ..|++++++.+++.++|+|+++.++|| ...|+++|.++|+++|++|++|++|. .+..
T Consensus 142 ~~--~~~~d------~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~-~~~~----- 207 (418)
T PLN02242 142 IT--TTFVD------ITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFA-PMVL----- 207 (418)
T ss_pred ce--EEEcC------CCCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCC-ccCC-----
Confidence 43 33322 238999999886535899999888776 56799999999999999999999984 3221
Q ss_pred CCCC-CCcEEEECCCccCccc--c-EEEEEEeCCCCchhHHHHHHhh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gp--r-gG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.+.+ ++|++++|++|++.|+ + ||++++++ ++.+++..
T Consensus 208 ~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~------~li~~l~~ 248 (418)
T PLN02242 208 SPARLGADVVVHSISKFISGGADIIAGAVCGPA------ELVNSMMD 248 (418)
T ss_pred CHHHcCCcEEEEeCccccCCCCCceEEEEEcCH------HHHHHHHH
Confidence 3334 7899999999998654 3 79998876 46555543
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=164.10 Aligned_cols=232 Identities=21% Similarity=0.194 Sum_probs=145.6
Q ss_pred hccccccCCCCC-----cHHHHHHHhhHhhccCCCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCC
Q 016668 103 KSLELIASENFT-----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLS 176 (385)
Q Consensus 103 ~~l~Liasen~~-----s~~V~~al~s~l~~~y~~g~p~~r~~~G-~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~s 176 (385)
..+++ +|.||. ++.+.++....+ .+|.-+..++|...| .+.++++| +.+++++|.+. .|.+++
T Consensus 101 ~~~n~-~s~~YLgl~~~~~~~~~~~~~ai-~~~g~~~~~sr~~~g~~~~~~ele----~~lA~~~g~~~-----ai~~~~ 169 (489)
T PLN02483 101 RCLNL-GSYNYLGFAAADEYCTPRVIESL-KKYSASTCSSRVDGGTTKLHRELE----ELVARFVGKPA-----AIVFGM 169 (489)
T ss_pred eEEEe-ecCCccCcCCCCHHHHHHHHHHH-HHhCCCCCccccccCCcHHHHHHH----HHHHHHhCCCc-----EEEECC
Confidence 34544 566664 233333333332 234444556664334 45455555 46889999765 467789
Q ss_pred cHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh------c
Q 016668 177 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------F 250 (385)
Q Consensus 177 Gs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~------~ 250 (385)
|+.+|..++.++++|||.|++.++.|.+... .+...|..+..++ . .|++++++.+++ .
T Consensus 170 G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~--------~~~~~Ga~v~~~~--~------~d~~~le~~l~~~i~~~~p 233 (489)
T PLN02483 170 GYATNSTIIPALIGKGGLIISDSLNHNSIVN--------GARGSGATIRVFQ--H------NTPSHLEEVLREQIAEGQP 233 (489)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcchhhHHHHH--------HHHHcCCeEEEEe--C------CCHHHHHHHHHhhhhcccc
Confidence 9999999999999999999999887655321 3456676555443 3 255666665532 1
Q ss_pred C---C--cEEEEcCCC---CCCCCCHHHHHHHHHHcCcEEEEeccccccccc-cCc--cc-CCC--CCCcEEEECCCccC
Q 016668 251 R---P--KLIIAGASA---YPRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASV--VA-DPF--KYCDVVTTTTHKSL 316 (385)
Q Consensus 251 ~---p--klIi~~~s~---~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~-~g~--~~-~p~--~gaDiv~~S~hK~l 316 (385)
+ | |++++..+. .|...++++|.++|+++|++|++|++|..|... .|. .. ..+ .+.||+++|+||+|
T Consensus 234 ~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~ 313 (489)
T PLN02483 234 RTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSF 313 (489)
T ss_pred ccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhc
Confidence 1 1 544443332 345679999999999999999999999765432 111 10 111 25789999999998
Q ss_pred ccccEEEEEEeCCCCchhHHHHHHhhccCCCcc-CCChHHHHHHHHHHHHHhh
Q 016668 317 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ-GGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 317 ~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~q-g~p~~~~iaala~Al~e~~ 368 (385)
|+.||++++++ ++.+.+......... ++..+..+++...+++.+.
T Consensus 314 -g~~GG~i~~~~------~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~ 359 (489)
T PLN02483 314 -GSCGGYIAGSK------ELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVIL 359 (489)
T ss_pred -ccCceEEEcCH------HHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHH
Confidence 56889999887 677777654322222 2344455555566676544
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-17 Score=163.32 Aligned_cols=174 Identities=21% Similarity=0.247 Sum_probs=127.6
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccc
Q 016668 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (385)
Q Consensus 134 ~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (385)
|.+.|| +++..+.||+ ++++++|.+. .+.+.||+.|+..++.++++|||+|+++++.|++..... .
T Consensus 44 ~~Y~R~--~~pt~~~L~~----~lA~l~g~~~-----~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~--~- 109 (386)
T PRK08045 44 HDYSRR--GNPTRDVVQR----ALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLF--D- 109 (386)
T ss_pred ceeeCC--CCccHHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHH--H-
Confidence 444444 5666667765 6888898653 466788889999999999999999999998876532210 0
Q ss_pred ccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccccc
Q 016668 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~G 291 (385)
......+. ++.. ++ ..|++++++.+++ ++|+|+++.++|| ...|+++|.++|+++|+++++|+++..+
T Consensus 110 -~~~~~~gi--~v~~--vd----~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 110 -SLAKRGCY--RVLF--VD----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred -HHHhhCCe--EEEE--eC----CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 01111222 2222 22 3689999998865 7899999888876 5789999999999999999999998655
Q ss_pred ccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHh
Q 016668 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 292 li~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~ 341 (385)
.. +.|++ ++|+++.|+||++.|+. +|+++++++ ++.+++.
T Consensus 180 ~~-----~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~-----~~~~~l~ 223 (386)
T PRK08045 180 AL-----QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP-----DVVTELA 223 (386)
T ss_pred cc-----CCchhhCCCEEEeecceeccCCCCceeEEEEeCcH-----HHHHHHH
Confidence 32 35666 89999999999998886 688877654 5666554
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=160.33 Aligned_cols=215 Identities=18% Similarity=0.219 Sum_probs=146.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccccccccc
Q 016668 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG 219 (385)
Q Consensus 140 ~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~ 219 (385)
|.|.+...+||+ .++++||.++ .|.++||+.|+..++...++|||+| +++. |+... ...+..
T Consensus 67 yag~~s~~~lE~----~va~~~G~~~-----av~v~sGT~Al~ll~~l~l~pGDeV--psn~---~f~Tt----~ahIe~ 128 (450)
T TIGR02618 67 YAGSRNFYHLER----TVRELYGFKY-----VVPTHQGRGAENLLSQIAIKPGDYV--PGNM---YFTTT----RYHQEK 128 (450)
T ss_pred hcCCCcHHHHHH----HHHHHHCCCe-----EEEcCCHHHHHHHHHHhCCCCcCEE--CCce---eHHHH----HHHHHh
Confidence 566666778886 5788999997 4778899999777766669999988 3332 21110 011344
Q ss_pred CcceEEEEecc------c-cCCCCCCCHHHHHHHhhhcC---CcEEEEcCCCC---CCC---CCHHHHHHHHHHcCcEEE
Q 016668 220 TSIYFESMPYR------L-DESTGLVDYDMLEKTAILFR---PKLIIAGASAY---PRD---FDYPRMRQIADAVGALLM 283 (385)
Q Consensus 220 ~g~~~~~i~~~------~-~~~~~~iD~d~le~~i~~~~---pklIi~~~s~~---~~~---~dl~~I~~ia~~~ga~li 283 (385)
.|..+.-++.+ + ++.++.+|+++|++.+++.. .++|.+..+++ |.+ .++++|.++|+++|+.|+
T Consensus 129 ~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi 208 (450)
T TIGR02618 129 NGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVF 208 (450)
T ss_pred CCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEE
Confidence 55422222111 1 24568999999999997532 23443332322 444 468999999999999999
Q ss_pred Eeccccccc---c---ccCcccCC--------CCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhc--cCCC
Q 016668 284 MDMAHISGL---V---AASVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA--VFPG 347 (385)
Q Consensus 284 vD~ah~~Gl---i---~~g~~~~p--------~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~--~fp~ 347 (385)
.|+||..|- + ..|....+ +.++|.+++|+||...+|.||+|+.+++ ++.++++.. .+.|
T Consensus 209 ~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d~-----~l~~k~r~~~~~~eG 283 (450)
T TIGR02618 209 YDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMNDD-----EMFQSAKELVVVFEG 283 (450)
T ss_pred EEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCCH-----HHHHHHHHHhhhcCC
Confidence 999998752 2 01222222 2389999999999999999999998887 888888766 4555
Q ss_pred c--cCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 348 L--QGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 348 ~--qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
+ .|+..-..+.|++++|.|+..+.|.+|+.
T Consensus 284 ~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~ 315 (450)
T TIGR02618 284 MPSYGGLAGRDMEAMAIGIREAVDYEYIEHRV 315 (450)
T ss_pred ccccCchhhhhHHHHHHHHHHhhhHHHHHHHH
Confidence 3 24445568899999999998876655543
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=166.47 Aligned_cols=191 Identities=17% Similarity=0.145 Sum_probs=133.4
Q ss_pred ccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHH
Q 016668 108 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (385)
Q Consensus 108 iasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~a 187 (385)
..+.++..+.+.++.... ... ..+|-..|+ +++..+.+|+ ++++++|.++ .|.++||+.|+.+++.+
T Consensus 37 ~~sstf~~~~~~~~~~~~-~~~-~~~~~Y~r~--~~pt~~~le~----~la~l~g~~~-----~v~fsSG~~Ai~~al~~ 103 (437)
T PRK05613 37 YQTTSYVFDSAEHAKQRF-ALE-DLGPIYSRL--TNPTVEALEN----RIASLEGGVH-----AVAFASGQAAETAAILN 103 (437)
T ss_pred eCCCCcccCCHHHHHHhh-ccc-cCCceeeCc--cChHHHHHHH----HHHHHhCCCe-----EEEeCCHHHHHHHHHHH
Confidence 344555555555543311 111 123444443 6777777765 6889999865 57899999999999999
Q ss_pred hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CC
Q 016668 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RD 265 (385)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~ 265 (385)
++++||+|++++..|++..... ...+...|..+.+++ ++ .|++++++.+++ ++|+|++..+.++ ..
T Consensus 104 ll~~Gd~VI~~~~~y~~t~~~~----~~~l~~~Gi~v~~vd---~~----~d~e~l~~~l~~-~tk~V~~e~~~Np~~~v 171 (437)
T PRK05613 104 LAGAGDHIVTSPRLYGGTETLF----LVTLNRLGIEVTFVE---NP----DDPESWQAAVQP-NTKAFFGETFANPQADV 171 (437)
T ss_pred hcCCCCEEEECCCccHHHHHHH----HHHHHhcCeEEEEEC---CC----CCHHHHHHhCCc-cCeEEEEECCCCCCCcc
Confidence 9999999999988887652110 012234565444332 21 288999999865 6888887655544 57
Q ss_pred CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeC
Q 016668 266 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (385)
Q Consensus 266 ~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~ 328 (385)
.|+++|+++|+++|+++++|++|+.|.. ..+++ |+|++++|+||++.|+. ||+++.++
T Consensus 172 ~di~~I~~la~~~gi~livD~t~a~g~~-----~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~ 233 (437)
T PRK05613 172 LDIPAVAEVAHRNQVPLIVDNTIATAAL-----VRPLELGADVVVASLTKFYTGNGSGLGGVLIDGG 233 (437)
T ss_pred cCHHHHHHHHHHcCCeEEEECCCccccc-----cChHHhCCCEEEeeccceecCCCcceeEEEEecC
Confidence 8999999999999999999999976543 34566 89999999999987753 57777543
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-17 Score=162.90 Aligned_cols=172 Identities=19% Similarity=0.254 Sum_probs=126.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|.+.|+ +++..++||+ ++++++|.++ .+.+.||+.|+.+++ .+++|||+|+++.+.+|+... ++.
T Consensus 45 ~~~Y~R~--~~p~~~~le~----~lA~leg~~~-----~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~--~~~ 110 (364)
T PRK07269 45 GFDYTRT--KNPTRAKLEE----TLAAIESADY-----ALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFR--WFN 110 (364)
T ss_pred CcceeCC--CCccHHHHHH----HHHHHhCCCe-----EEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHH--HHH
Confidence 4445554 6677778876 5788888876 366788999999888 578999999999887765432 100
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
.....+ .+. + ++.+|++++++.+++ ++|+|+++.++|| ...|+++|+++|+++|+++++|++++.
T Consensus 111 ---~~~~~~-~~~-----~---~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~ 177 (364)
T PRK07269 111 ---QQEKEG-RFH-----F---TYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYS 177 (364)
T ss_pred ---HHHhcC-cEE-----E---EecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence 000011 111 1 124689999999865 7899999988886 457999999999999999999999765
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHh
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~ 341 (385)
++. ..|++ ++|++++|+||++.|+- ||+|+++++ ++.+++.
T Consensus 178 ~~~-----~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~-----~l~~~~~ 222 (364)
T PRK07269 178 PIY-----QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDL-----ELYEKLF 222 (364)
T ss_pred ccc-----CCchhhCCcEEEecCceeccCCCcccceEEEeCcH-----HHHHHHH
Confidence 532 35677 89999999999998864 799888775 6666664
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-17 Score=163.08 Aligned_cols=176 Identities=19% Similarity=0.112 Sum_probs=130.4
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|.+.|+ |++..++||+ ++++++|.+. .+.+.||+.|+..++.++++|||+|+++++.|++......
T Consensus 56 ~~~Y~r~--~~pt~~~Le~----~lA~l~g~~~-----~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~-- 122 (394)
T PRK07050 56 QWRYGLH--ATPTSLALAQ----RLAEIEGGRH-----ALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGE-- 122 (394)
T ss_pred CcccCCC--CCHHHHHHHH----HHHHHhCCCe-----EEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHH--
Confidence 3445554 7787777776 5888999865 3567888999999999999999999999988765432100
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
......|..+. .++. .|.+++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|++|..
T Consensus 123 --~~~~~~Gi~v~--~vd~------~~~~~l~~~i~~-~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 123 --WLARDFGITVR--FYDP------LIGAGIADLIQP-NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred --HHHHhcCeEEE--EECC------CCHHHHHHhcCC-CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 01234565433 3322 145788888865 7899999888776 567999999999999999999999977
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCccc---cEEEEEEeCCCCchhHHHHHHhh
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
|.. ..|++ |+|+++.|++|++.|. .||+++++++ ++.+++..
T Consensus 192 ~~~-----~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~-----~~~~~~~~ 237 (394)
T PRK07050 192 GLA-----FKPFEHGVDISVQALTKYQSGGSDVLMGATITADA-----ELHAKLKL 237 (394)
T ss_pred ccc-----cCHHHcCCeEEEEECCceecCCCCeeEEEEEECCH-----HHHHHHHH
Confidence 653 34555 8999999999999654 3788888765 67676654
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-17 Score=163.36 Aligned_cols=174 Identities=18% Similarity=0.197 Sum_probs=127.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|...|+ |++..+.||+ ++++++|.+. .+.++||+.|+.+++ ++++|||+|+++++.|++.....
T Consensus 41 ~~~y~r~--~~p~~~~Le~----~la~l~g~~~-----al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~--- 105 (380)
T PRK06176 41 GYEYSRS--GNPTRFALEE----LIADLEGGVK-----GFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLF--- 105 (380)
T ss_pred CCcccCC--CChhHHHHHH----HHHHHhCCCC-----EEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHH---
Confidence 4555554 6777777776 5888999876 367899999988655 67899999999998776543210
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
...+...|. ++..++ ..|++++++.+++ ++|+|++..+++| ...|+++|.++|+++|+++++|+++..
T Consensus 106 -~~~~~~~gi--~v~~vd------~~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~ 175 (380)
T PRK06176 106 -DKVLVKNGL--SCTIID------TSDLSQIKKAIKP-NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175 (380)
T ss_pred -HHHHHhcCe--EEEEcC------CCCHHHHHHhcCc-CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccc
Confidence 011233454 333322 2489999998865 7899998877766 578999999999999999999999865
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHh
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~ 341 (385)
+.. ..|++ ++|++++|+||++.||. ||+++++++ ++.+++.
T Consensus 176 ~~~-----~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~-----~~~~~~~ 220 (380)
T PRK06176 176 PYY-----QNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNE-----ALAQEIA 220 (380)
T ss_pred ccc-----CCccccCCCEEEecCceeccCCccceeeEEEecHH-----HHHHHHH
Confidence 432 24556 89999999999998874 788888765 5555543
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-16 Score=154.12 Aligned_cols=242 Identities=13% Similarity=0.099 Sum_probs=154.1
Q ss_pred cchhhhhcccCChHHHHHHHHHHHHhhhccccccC--CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHH
Q 016668 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (385)
Q Consensus 76 ~~~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Lias--en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~ 153 (385)
++++++++......++..+.+........++|-.+ +-.+++.+++++...+.+.. ..|+. ..|.+ ++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~G~~---~lr~~i 75 (384)
T PRK06348 3 NKFLAKKYQQMEVNIMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGH-TRYTD---SGGDV---ELIEEI 75 (384)
T ss_pred chHHHHHHhcCCccHHHHHHHHHHhcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCcH---HHHHHH
Confidence 34556667666666665554433222233555432 33345677665544433221 23443 22443 677777
Q ss_pred HHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
++++.+.+|...+ . -+|..++|+ .|+..++.++++|||+|++.+|.|.++.. .+...|..+ ++++.+
T Consensus 76 a~~~~~~~~~~~~-~-~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~~~--~~~~~~ 143 (384)
T PRK06348 76 IKYYSKNYDLSFK-R-NEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKD--------QIEMVGGKP--IILETY 143 (384)
T ss_pred HHHHHHHhCCCCC-h-hhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHH--------HHHHcCCEE--EEecCC
Confidence 7788777765421 1 245566665 59999999999999999999987765432 234556543 444443
Q ss_pred C-CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccC--CCCC
Q 016668 233 E-STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFKY 304 (385)
Q Consensus 233 ~-~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~~g 304 (385)
+ +++.+|++++++.++. ++|+|+++.++||+ .. ++++|.++|+++|++|++|+++ .++...+..+. .+.+
T Consensus 144 ~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~ 221 (384)
T PRK06348 144 EEDGFQINVKKLEALITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVY-DGFSFYEDFVPMATLAG 221 (384)
T ss_pred cCcCCcCCHHHHHHhhCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEeccc-ccceeCCCccchhhcCC
Confidence 2 3457999999998854 78999888788774 33 4788899999999999999996 55554332211 1221
Q ss_pred -C--cEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhcc
Q 016668 305 -C--DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAV 344 (385)
Q Consensus 305 -a--Div~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~ 344 (385)
. .+++.|++|++ +|.|.|++++++ ++.+.+....
T Consensus 222 ~~~~vi~~~SfSK~~~l~GlRiG~~v~~~------~~~~~~~~~~ 260 (384)
T PRK06348 222 MPERTITFGSFSKDFAMTGWRIGYVIAPD------YIIETAKIIN 260 (384)
T ss_pred CcCcEEEEecchhccCCccccceeeecCH------HHHHHHHHHH
Confidence 2 26789999996 688999999986 5766665443
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-17 Score=162.96 Aligned_cols=167 Identities=22% Similarity=0.279 Sum_probs=125.0
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+++|+ ++++++|.+. .+.++||+.|+..++.++++|||+|++.++.|++.... + . ..+...|
T Consensus 62 ~~p~~~~le~----~lA~l~g~~~-----~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~-~-~--~~~~~~G 128 (398)
T PRK08249 62 TNPTVQAFEE----KVRILEGAEA-----ATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKI-F-T--EFLPRMG 128 (398)
T ss_pred CChHHHHHHH----HHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH-H-H--HHHhhCC
Confidence 6677777775 6888999876 47789999999999999999999999999877653210 0 0 0123445
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
.. +..+ + ..|++++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|++|..++. .
T Consensus 129 i~--v~~v--d----~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~-----~ 194 (398)
T PRK08249 129 VD--VTLC--E----TGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPIN-----Q 194 (398)
T ss_pred eE--EEEc--C----CCCHHHHHHhcCC-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCcccc-----C
Confidence 43 3332 2 3689999999865 7899999877766 578999999999999999999999865432 2
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~ 341 (385)
.++. ++|+++.|+||++.|+. ||++++++ ++.+++.
T Consensus 195 ~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~------~l~~~l~ 234 (398)
T PRK08249 195 NPLALGADLVIHSATKFLSGHADALGGVVCGSK------ELMEQVY 234 (398)
T ss_pred CchhhCCCEEeccCceecCCCCCceEEEEECCH------HHHHHHH
Confidence 3445 89999999999997753 57777755 5666554
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-16 Score=157.94 Aligned_cols=196 Identities=14% Similarity=0.042 Sum_probs=135.0
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhcc
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILK 190 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~ 190 (385)
-.+++.+.+++...+......+|+. ..|.+ ++++.+++++.+.+|.+.+ + -+|..++| ++|+..++.++++
T Consensus 68 ~~~~~~~~~a~~~al~~~~~~~Y~~---~~G~~---~lr~aia~~~~~~~~~~~~-~-~~v~it~G~~~al~l~~~~l~~ 139 (430)
T PLN00145 68 FRTAPEAEDAVAAALRSGKYNSYST---CVGLL---PARRAIAEYLSRDLPYELS-T-DDIYLTAGCAQAIEIIMSVLAQ 139 (430)
T ss_pred CCCCHHHHHHHHHHHHcCcCCCCCC---CccCH---HHHHHHHHHHhhccCCCCC-h-hhEEEeCCHHHHHHHHHHHhcC
Confidence 4568899999988775433334543 22444 6777777777666565432 1 24555665 5699999999999
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d 267 (385)
|||+|++++|.|..+.. ...+.|..+..++ +.+ +++.+|++++++++++ ++++|++.+++|| ...+
T Consensus 140 ~Gd~Vlv~~P~y~~y~~--------~~~~~g~~~~~~~--~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~P~NPtG~v~~ 208 (430)
T PLN00145 140 PGANILLPRPGYPLYEA--------RAVFSGLEVRHFD--LLPERGWEVDLEGVEALADE-NTVAMVIINPNNPCGSVYS 208 (430)
T ss_pred CCCEEEEcCCCCccHHH--------HHHHcCCEEEEee--CCcccCCcCCHHHHHHHhCc-CceEEEEeCCCCCCCCCCC
Confidence 99999999986654321 2345566554444 332 3568999999998865 6788888777876 3454
Q ss_pred ---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CCC-c-EEEECCCccC--ccccEEEEEEe
Q 016668 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYC-D-VVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 268 ---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~ga-D-iv~~S~hK~l--~GprgG~I~~~ 327 (385)
+++|.++|+++|+++|+|+++ ..+.+.+....++ ... . +++.|++|++ +|+|.||++..
T Consensus 209 ~~~l~~i~~~a~~~~i~ii~De~Y-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~ 277 (430)
T PLN00145 209 YEHLAKIAETARKLGILVIADEVY-DHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATC 277 (430)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccc-hhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEe
Confidence 788889999999999999996 5565543211222 222 2 6789999994 89999999974
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=153.20 Aligned_cols=208 Identities=21% Similarity=0.188 Sum_probs=141.0
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhc
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAIL 189 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all 189 (385)
+..+++.+.+++...+...+. .|+. ..|. .++++.+++++.+.+|...... .+|..++| ++|+..++.+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~Y~~---~~g~---~~lr~~ia~~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~~~ 112 (391)
T PRK07309 41 DFTTPDHVKEAAKRAIDANQS-HYTG---MAGL---LELRQAAADFVKEKYNLDYAPE-NEILVTIGATEALSASLTAIL 112 (391)
T ss_pred CCCCCHHHHHHHHHHHhcCCC-CCCC---CCCc---HHHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHHHHHHHHHHhc
Confidence 334477888888766543221 2332 2243 3788888888887777642110 13555555 579999999999
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--C
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--D 265 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~~~--~ 265 (385)
+|||+|++.+|.|+++.. .+...|..+. .++.+++++.+|++++++.++.. ++|+|+++.++||+ .
T Consensus 113 ~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~--~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~ 182 (391)
T PRK07309 113 EPGDKVLLPAPAYPGYEP--------IVNLVGAEIV--EIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVT 182 (391)
T ss_pred CCCCEEEEeCCCCcchHH--------HHHHcCCEEE--EEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcC
Confidence 999999999987765421 2345666544 44455445579999999988642 57899887777763 3
Q ss_pred C---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC-C-CCc--EEEECCCccC--ccccEEEEEEeCCCCchhHH
Q 016668 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-YCD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVEL 336 (385)
Q Consensus 266 ~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~-~-gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~ 336 (385)
. ++++|.++|+++|+++++|+++ ..+...+....++ . ..+ +++.|++|++ +|.|.|++++++ ++
T Consensus 183 ~s~~~~~~l~~~~~~~~~~ii~D~~y-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~------~~ 255 (391)
T PRK07309 183 YSREQIKALADVLKKYDIFVISDEVY-SELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPA------EF 255 (391)
T ss_pred cCHHHHHHHHHHHHHcCcEEEEEccc-cceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCH------HH
Confidence 3 4889999999999999999997 4555433221122 1 123 7889999997 788999999987 56
Q ss_pred HHHHhhc
Q 016668 337 ESAINNA 343 (385)
Q Consensus 337 ~~~i~~~ 343 (385)
.+++...
T Consensus 256 ~~~~~~~ 262 (391)
T PRK07309 256 TAQLIKS 262 (391)
T ss_pred HHHHHHH
Confidence 6666543
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-16 Score=160.73 Aligned_cols=225 Identities=19% Similarity=0.103 Sum_probs=151.8
Q ss_pred hhhhcccCChHHHHHHHHHHHHhh-hc---cccccC-C----CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQF-KS---LELIAS-E----NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDEL 149 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~-~~---l~Lias-e----n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~l 149 (385)
.++++..+.+++...+.++..+.. .+ ++|-.+ + -.+|+.+++++...+.. ..+|+. ..|.+ ++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~--~~~Y~~---~~G~~---~l 190 (517)
T PRK13355 119 KSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD--TEGYSD---SKGLF---SA 190 (517)
T ss_pred hhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc--CCCCCC---CcChH---HH
Confidence 578888888887765555444432 33 444331 2 23588899998776542 234554 23443 67
Q ss_pred HHHHHHHHHHHcC--CCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEE
Q 016668 150 ETLCQKRALAAFN--LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (385)
Q Consensus 150 e~~~~~~la~lfg--~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (385)
++.+.+++.+..+ ++.+ +|.+++|+ +++..++.++++|||+|++++|.|..+.. .+...|..+
T Consensus 191 Reaia~~~~~~~~~~~~~~----~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~--------~~~~~g~~~-- 256 (517)
T PRK13355 191 RKAIMQYAQLKGLPNVDVD----DIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTA--------CVNLAGGTA-- 256 (517)
T ss_pred HHHHHHHHHhcCCCCCChh----HEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHH--------HHHHCCCEE--
Confidence 7666666655443 4443 56777776 58889999999999999999987654321 234566644
Q ss_pred EeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCc-cc
Q 016668 227 MPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VA 299 (385)
Q Consensus 227 i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~ 299 (385)
++++++++ ++.+|++++++.+.. ++|+|+++.|+||+ ..+ +++|.++|+++|++||+|+++ ..+++.+. ++
T Consensus 257 v~~~~~~~~~~~~d~~~l~~~~~~-~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y-~~~~~~~~~~~ 334 (517)
T PRK13355 257 VHYRCDEQSEWYPDIDDIRSKITS-RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIY-DRLVMDGLEHT 334 (517)
T ss_pred EEeecCcccCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhh-hhhcCCCCCcc
Confidence 44445544 468999999998864 78999888888873 455 788999999999999999996 45655442 22
Q ss_pred CCCC-CCc---EEEECCCccC--ccccEEEEEEe
Q 016668 300 DPFK-YCD---VVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 300 ~p~~-gaD---iv~~S~hK~l--~GprgG~I~~~ 327 (385)
+... ..| +++.|++|++ +|+|.||++..
T Consensus 335 s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~ 368 (517)
T PRK13355 335 SIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILS 368 (517)
T ss_pred cHHHhCCCCeEEEEecchhhccCcccceEEEEee
Confidence 2222 223 3358999995 89999999864
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=165.20 Aligned_cols=165 Identities=21% Similarity=0.238 Sum_probs=123.6
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|.++|+ +++.++++|+ ++++++|.++ .+.+.||+.|+..++.+++++||+|++++.+|++.... +
T Consensus 55 ~~~y~R~--~~p~~~~le~----~lA~l~g~~~-----av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~--~- 120 (433)
T PRK08134 55 GHVYSRI--SNPTVAVLEE----RVAALEGGVG-----AIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNL--L- 120 (433)
T ss_pred CceeecC--cChHHHHHHH----HHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHH--H-
Confidence 3444443 6677777775 5889999887 37789999999999999999999999998877653210 0
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
. ..+...|.. +..++++ |++++++.+++ ++|+|++..+++| ...|+++|.++|+++|+++++|++|..
T Consensus 121 ~-~~l~~~Gi~--v~~vd~~------d~~~l~~~i~~-~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~ 190 (433)
T PRK08134 121 H-YTLRRFGIE--TTFVKPG------DIDGWRAAIRP-NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTT 190 (433)
T ss_pred H-HHHhhCCeE--EEEECCC------CHHHHHHhcCC-CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcc
Confidence 0 012234554 3343232 89999999975 7899988776665 678999999999999999999999977
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEE
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFF 326 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~ 326 (385)
+.. +.|++ |+|++++|.||++.|+. ||+++.
T Consensus 191 ~~~-----~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~ 225 (433)
T PRK08134 191 PYL-----LRPFEHGADLVYHSATKFLGGHGTAIGGVLVD 225 (433)
T ss_pred ccc-----CCchhcCCCEEEeccccccCCCCCceEEEEEe
Confidence 754 34667 89999999999987664 355553
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=159.99 Aligned_cols=245 Identities=15% Similarity=0.096 Sum_probs=149.3
Q ss_pred cccc-cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 105 LELI-ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 105 l~Li-asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
+.|- ++-.++++.|.+++...+.. +..+....++.+..... .+.+..+ .+ +++|+++++ .+++.|+|.++..
T Consensus 29 iyld~~a~g~~p~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~-~l~g~~~~~---v~~~~~~t~~l~~ 101 (406)
T TIGR01814 29 IYLDGNSLGLMPKAARNALKEELDK-WAKIAIRGHNTGKAPWF-TLDESLL-KL-RLVGAKEDE---VVVMNTLTINLHL 101 (406)
T ss_pred EEecCCCcCcCcHHHHHHHHHHHHH-HHHhhhccCccCCCChh-hhhhhhc-cc-cccCCCCCc---EEEeCCchHHHHH
Confidence 4444 45557799999998866543 32221111111111111 2222222 34 899998752 2445556778888
Q ss_pred HHHHhccCCC---EEeecCCCCCccccCCccccccccccCcceEE--EEeccccCCCCCCCHHHHHHHhhh--cCCcEEE
Q 016668 184 VYTAILKPHD---RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE--SMPYRLDESTGLVDYDMLEKTAIL--FRPKLII 256 (385)
Q Consensus 184 a~~all~pGD---~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~--~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi 256 (385)
++.++++||| .|++.+.+|++.. +.+. ..+...|..+. .+.++.+ +++.+|++++++.++. .++++|+
T Consensus 102 ~~~~~~~~~~~~~~i~~~~~~~~s~~-~~~~---~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~~~~~t~lv~ 176 (406)
T TIGR01814 102 LLASFYKPTPKRYKILLEAKAFPSDH-YAIE---SQLQLHGLTVEESMVQIEPR-EEETLRLEDILDTIEKNGDDIAVIL 176 (406)
T ss_pred HHHHhcCCcCCccEEEecCCCCChHH-HHHH---HHHHhcCCCcccceEEeccC-CCCccCHHHHHHHHHhcCCCeEEEE
Confidence 8888887753 5776666554321 1110 01233455441 1232232 3467899999988752 3678887
Q ss_pred EcCCC--CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccEEEEEEeCCCCc
Q 016668 257 AGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGGMIFFKKDPVL 332 (385)
Q Consensus 257 ~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~GprgG~I~~~~~~~~ 332 (385)
+...+ +|...|+++|.++|+++|+++++|++|+.|.+ +-.++ ++|++++|+||||.||.||+++..++
T Consensus 177 ~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~-----~id~~~~gvD~~~~s~hK~l~g~pG~~l~v~~~--- 248 (406)
T TIGR01814 177 LSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNV-----PLDLHDWGVDFACWCTYKYLNAGPGAGAFVHEK--- 248 (406)
T ss_pred EeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCc-----ccccccCCCCEEEEcCccccCCCCCeEEEEehh---
Confidence 76543 46888999999999999999999999988754 22232 79999999999997666766665543
Q ss_pred hhHHHHHHhhc-----------cC-----------CCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 333 GVELESAINNA-----------VF-----------PGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 333 ~~~~~~~i~~~-----------~f-----------p~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
.+. .+... .| ....|+|+...++++..|++.+...+.
T Consensus 249 --~~~-~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~ 307 (406)
T TIGR01814 249 --HAH-TERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGM 307 (406)
T ss_pred --hhh-hcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCH
Confidence 111 11000 00 001367899999999999988765443
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=161.62 Aligned_cols=236 Identities=19% Similarity=0.171 Sum_probs=161.8
Q ss_pred cccccCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCCcH-HHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH
Q 016668 105 LELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNE-YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 179 (385)
Q Consensus 105 l~Liasen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G~~-~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~ 179 (385)
+-.++|++|+ +|.++++....+ .+|..|..++|...|+. ..+++|+ .+++++|.+. .+.++||..
T Consensus 104 ~l~FsSndYLGL~~~p~v~~a~~~ai-~~yG~g~~gSrl~~G~~~~h~~LE~----~LA~f~g~e~-----all~sSGy~ 173 (476)
T PLN02955 104 LLLFSGNDYLGLSSHPTISNAAANAA-KEYGMGPKGSALICGYTTYHRLLES----SLADLKKKED-----CLVCPTGFA 173 (476)
T ss_pred EEEeeccCccCCCCCHHHHHHHHHHH-HHcCCCCCCcCccccChHHHHHHHH----HHHHHHCCCc-----EEEECChHH
Confidence 4446899997 899999988765 57877888888888864 4455665 6899999987 367899999
Q ss_pred HHHHHHHHhc--------------cCCCEEeecCCCCCccccCCccccccccccCcc--eEEEEeccccCCCCCCCHHHH
Q 016668 180 ANFEVYTAIL--------------KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI--YFESMPYRLDESTGLVDYDML 243 (385)
Q Consensus 180 A~~~a~~all--------------~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~--~~~~i~~~~~~~~~~iD~d~l 243 (385)
||..++.+|. +++|.|+.....|.+-. ..+.+... ..+++.|+ +.|+++|
T Consensus 174 AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~--------dG~~ls~~~~~a~~~~f~------HND~~~L 239 (476)
T PLN02955 174 ANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASII--------DGVRLAERQGNVEVFVYR------HCDMYHL 239 (476)
T ss_pred HHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHH--------HHHHhccccCCceEEEeC------CCCHHHH
Confidence 9999998873 45667776655443211 12222210 12344443 4599999
Q ss_pred HHHhhhcC--CcEEEEcC--CCCCCCCCHHHHHHHHHHcCcEEEEecccccccccc---Cccc-CCC-CCCcEEEECCCc
Q 016668 244 EKTAILFR--PKLIIAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SVVA-DPF-KYCDVVTTTTHK 314 (385)
Q Consensus 244 e~~i~~~~--pklIi~~~--s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~---g~~~-~p~-~gaDiv~~S~hK 314 (385)
+++++..+ .++|+++. +..+...|+++|.++|+++|++|++|++|+.|.... |... ..+ ...|++++|+.|
T Consensus 240 e~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsK 319 (476)
T PLN02955 240 NSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSK 319 (476)
T ss_pred HHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCcc
Confidence 99886432 34666653 334667889999999999999999999998887653 2111 111 256799999999
Q ss_pred cCccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCC-hHHHHHHHHHHHHHhhCch
Q 016668 315 SLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGP-HNHTIGGLAVCLKHAQSPE 371 (385)
Q Consensus 315 ~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p-~~~~iaala~Al~e~~~~~ 371 (385)
.+ |-+||+|++++ ++.+.+.....+.+.++. .+...++...+++.+..+.
T Consensus 320 A~-G~~GGfi~gs~------~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~ 370 (476)
T PLN02955 320 AA-GCHGGFIACSK------KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEK 370 (476)
T ss_pred ch-hccCceeecHH------HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCH
Confidence 86 67899999988 577777654444444443 3445555566776665543
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-16 Score=154.87 Aligned_cols=236 Identities=14% Similarity=0.128 Sum_probs=150.9
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~l 157 (385)
++++..+....+..+.+........++|-..++ .+++.+++++...+.... .+|.. ..|.+ ++++.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~---~~g~~---~lr~~ia~~~ 83 (391)
T PRK08361 11 AGRINLIQRSKIRELFERASKMENVISLGIGEPDFDTPKNIKEAAKRALDEGW-THYTP---NAGIP---ELREAIAEYY 83 (391)
T ss_pred hHHHHhCCccHHHHHHHHHHhhcCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCcH---HHHHHHHHHH
Confidence 455555555444443333222223455553333 346888888877654322 12322 12444 7877777788
Q ss_pred HHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-C
Q 016668 158 LAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-T 235 (385)
Q Consensus 158 a~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~ 235 (385)
.+.+|...+. -+|.+++| ++|+..++.++++|||+|++++|.|.++.. .+...|..+..++ ++++ +
T Consensus 84 ~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~--------~~~~~g~~~~~v~--~~~~~~ 151 (391)
T PRK08361 84 KKFYGVDVDV--DNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVE--------DAKIAEAKPIRIP--LREENE 151 (391)
T ss_pred HHHhCCCCCc--ccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHH--------HHHHcCCEEEEEe--cCCccC
Confidence 7777753211 13445555 569999999999999999999987654321 3345666544444 5543 4
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCc-ccCCC--C-CCc
Q 016668 236 GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPF--K-YCD 306 (385)
Q Consensus 236 ~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p~--~-gaD 306 (385)
+.+|++++++.++. ++++|++..++|| ...+ +++|.++|+++++++++|+++. .+...+. .+... + ..+
T Consensus 152 ~~~d~~~l~~~i~~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~ 229 (391)
T PRK08361 152 FQPDPDELLELITK-RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYE-HFLYEGAKHYPMIKYAPDNT 229 (391)
T ss_pred CCCCHHHHHHhccc-ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccc-cceeCCCCCCCHhhcCCCCE
Confidence 57999999998865 6888888777765 5566 7889999999999999999974 4443321 11111 1 235
Q ss_pred EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 307 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+++.|++|++ +|.|.|++++++ ++.+.+..
T Consensus 230 i~~~s~SK~~~~~GlRiG~~~~~~------~~~~~~~~ 261 (391)
T PRK08361 230 ILANSFSKTFAMTGWRLGFVIAPE------QVIKDMIK 261 (391)
T ss_pred EEEecCchhcCCcHhhhhhhccCH------HHHHHHHH
Confidence 7889999997 567889999976 46555543
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-17 Score=163.02 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=122.2
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|.+.|+ |+++++.||+ +++++.|.++ .+.++||+.|+..++.++++|||+|++.++.|++|....
T Consensus 38 ~~~Y~r~--g~p~~~~lE~----~la~leg~~~-----~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~--- 103 (397)
T PRK05939 38 GFTYARQ--GTPTTAALEA----KITKMEGGVG-----TVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF--- 103 (397)
T ss_pred CCCcCCC--CCHHHHHHHH----HHHHHhCCCe-----EEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH---
Confidence 3444443 8898888886 5788999987 467889999999999999999999999998887764321
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
..+...|..+..++ . .|++++++.+++ ++|+|+++.+++| ...|+++|+++|+++|+++++|++|..
T Consensus 104 --~~l~~~G~~v~~v~--~------~d~e~l~~~l~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~ 172 (397)
T PRK05939 104 --GTLRGLGVEVTMVD--A------TDVQNVAAAIRP-NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTS 172 (397)
T ss_pred --HHHHhcCCEEEEEC--C------CCHHHHHHhCCC-CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccc
Confidence 12334565444332 2 489999999865 7999998877665 567999999999999999999999876
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCccc
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP 319 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gp 319 (385)
+.. ..+.+ ++|+++.|+||++.|+
T Consensus 173 ~~~-----~~~~~~gaDivv~S~sK~~~g~ 197 (397)
T PRK05939 173 PWL-----FRPKDVGASLVINSLSKYIAGH 197 (397)
T ss_pred ccc-----cCccccCCEEEEecCeecccCC
Confidence 643 24555 8999999999999764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-16 Score=158.34 Aligned_cols=195 Identities=11% Similarity=0.061 Sum_probs=133.6
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceeecCCcH-HHHHHHHHHhc
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS-PANFEVYTAIL 189 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~--~~~~~~~~V~~~sGs-~A~~~a~~all 189 (385)
.+++.+.+++...+......+|.. ..|.+ ++++.+++++.+.+|. +++ +|..++|+ +|+..++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lR~aiA~~~~~~~~~~~~~~----~I~it~G~~~al~~~~~~l~ 152 (462)
T PLN02187 83 RTCIEAEDAVVDVLRSGKGNSYGP---GAGIL---PARRAVADYMNRDLPHKLTPE----DIFLTAGCNQGIEIVFESLA 152 (462)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC---CCChH---HHHHHHHHHHHHhcCCCCCcc----cEEEeCCHHHHHHHHHHHhc
Confidence 346788888887665332223322 22433 6777777777666654 443 46666665 69999999999
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d 267 (385)
+|||+|++++|.|.++.. .+...|..+..+++. ..+++.+|++++++.++. ++++|+++.|+|| ..++
T Consensus 153 ~pGd~Vlv~~P~y~~y~~--------~~~~~g~~~~~~~l~-~~~~~~~d~~~l~~~~~~-~~~~v~i~nP~NPTG~v~s 222 (462)
T PLN02187 153 RPNANILLPRPGFPHYDA--------RAAYSGLEVRKFDLL-PEKEWEIDLEGIEAIADE-NTVAMVVINPNNPCGNVYS 222 (462)
T ss_pred CCCCEEEEeCCCCccHHH--------HHHHcCCEEEEEeCc-cccCCccCHHHHHHhcCC-CcEEEEEeCCCCCCCCccC
Confidence 999999999997765421 234567655555432 123568999999998854 6788888777777 3444
Q ss_pred ---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----CCc-EEEECCCccC--ccccEEEEEEeC
Q 016668 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKK 328 (385)
Q Consensus 268 ---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~----gaD-iv~~S~hK~l--~GprgG~I~~~~ 328 (385)
+++|.++|+++|++||+|++| ..+++.+....++. ... +++.|++|++ +|+|.||+++.+
T Consensus 223 ~e~l~~i~~~a~~~~i~iI~DE~Y-~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~ 292 (462)
T PLN02187 223 HDHLKKVAETARKLGIMVISDEVY-DRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALND 292 (462)
T ss_pred HHHHHHHHHHHHHCCCEEEEeccc-cccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecC
Confidence 788999999999999999996 56665442222222 112 5789999995 899999999854
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=159.97 Aligned_cols=169 Identities=23% Similarity=0.269 Sum_probs=124.0
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+++|+ ++++++|.+. .+.+.||+.|+..++.++++|||+|++.++.|++...... ......+
T Consensus 49 ~~p~~~~le~----~lA~l~g~~~-----v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~----~~~~~~~ 115 (382)
T TIGR02080 49 GNPTRDLLQQ----ALAELEGGAG-----AVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLN----ALAKKGC 115 (382)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHH----HHHhhcC
Confidence 6676777776 5788888643 3566778889999999999999999999988875432100 0011222
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
. ++.. ++ ..|++++++.+++ ++|+|+++.++|| ...|+++|.++|+++|+++++|++|..+.. .
T Consensus 116 ~--~v~~--~d----~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~-----~ 181 (382)
T TIGR02080 116 F--RVLF--VD----QGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPAL-----Q 181 (382)
T ss_pred e--EEEE--EC----CCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 2 2222 12 2488999999865 7899999888776 568999999999999999999999866542 2
Q ss_pred CCCC-CCcEEEECCCccCccc---cEEEEEEeCCCCchhHHHHHHhh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.|+. ++|++++|+||++.|+ ++|+++++++ ++.+++..
T Consensus 182 ~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~-----~~~~~l~~ 223 (382)
T TIGR02080 182 NPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDP-----QVAEELAW 223 (382)
T ss_pred CchhhCCCEEEeecceeccCCCCceeEEEEeCCH-----HHHHHHHH
Confidence 4555 8999999999999775 4788888765 66666643
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=153.86 Aligned_cols=200 Identities=14% Similarity=0.120 Sum_probs=138.1
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhc
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAIL 189 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all 189 (385)
+-.+|+.+++++.+.+......+|+. +...+++ +.++++++++.+ +|.+++|+. ++..++.+++
T Consensus 33 ~~~~p~~~~~a~~~~~~~~~~~~y~~-------~~~~~lr----~~ia~~~~~~~~----~i~it~G~~~~l~~~~~~l~ 97 (351)
T PRK14807 33 PFELPEEVIKNIQEIVKSSQVNIYPD-------PTAEKLR----EELARYCSVVPT----NIFVGNGSDEIIHLIMLAFI 97 (351)
T ss_pred CCCCCHHHHHHHHHHhhcCcccCCCC-------ccHHHHH----HHHHHHhCCCcc----cEEEecCHHHHHHHHHHHhc
Confidence 33468999999876654222223332 1122444 457778898764 566777765 7888889999
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d 267 (385)
+|||+|++.+|.+.++.. .....|..+. +++++ +++.+|++++++.++..++|+|+++.++|| ...+
T Consensus 98 ~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~--~v~~~-~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~ 166 (351)
T PRK14807 98 NKGDVVIYPHPSFAMYSV--------YSKIAGAVEI--PVKLK-EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIE 166 (351)
T ss_pred CCCCEEEEeCCChHHHHH--------HHHHcCCeEE--EeecC-CCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCC
Confidence 999999999887654321 2345666444 44454 346799999999986557899988877775 5788
Q ss_pred HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CC-cEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 268 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC-DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 268 l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-ga-Div~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
.+++.++|++++.++++|++|. ++. +...+..++ .. -+++.|++|++ +|.|.|++++++ ++.+.+...
T Consensus 167 ~~~l~~l~~~~~~~~ivDe~y~-~~~-~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~------~~~~~~~~~ 238 (351)
T PRK14807 167 REDIIKIIEKSRGIVVVDEAYF-EFY-GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANE------NILKYLNLV 238 (351)
T ss_pred HHHHHHHHHhCCCEEEEeCcch-hhc-ccchHHHhhhCCCEEEEecchHhcccchhceeeeecCH------HHHHHHHHc
Confidence 9999999999899999999973 442 221222222 22 27889999997 788999999876 677777654
Q ss_pred c
Q 016668 344 V 344 (385)
Q Consensus 344 ~ 344 (385)
.
T Consensus 239 ~ 239 (351)
T PRK14807 239 K 239 (351)
T ss_pred c
Confidence 3
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=161.23 Aligned_cols=169 Identities=20% Similarity=0.237 Sum_probs=126.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+++|+ ++++++|.+. .+.++||+.|+..++. ++++||+|+++++.|++...... ..+...|
T Consensus 52 ~~p~~~~le~----~lA~l~g~~~-----~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~----~~~~~~G 117 (390)
T PRK08064 52 GNPTREALED----IIAELEGGTK-----GFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMIT----EVLSRFG 117 (390)
T ss_pred CChhHHHHHH----HHHHHhCCCC-----eEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHH----HHHHHcC
Confidence 5676777775 6889999885 3667999999887775 88999999999988875432100 1223456
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+..++ + .|++++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|+++..+.. .
T Consensus 118 ~~v~~v~--~------~d~~~l~~~l~~-~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~-----~ 183 (390)
T PRK08064 118 IEHTFVD--M------TNLEEVAQNIKP-NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLL-----Q 183 (390)
T ss_pred CEEEEEC--C------CCHHHHHHhcCC-CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccc-----c
Confidence 6544443 2 278999998865 7899999888765 678999999999999999999999865432 2
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhhc
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
.+++ ++|+++.|+||++.|+. +|+++++++ ++.+++...
T Consensus 184 ~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~-----~~~~~l~~~ 226 (390)
T PRK08064 184 KPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDE-----ELAQKLYFL 226 (390)
T ss_pred CchhhCCcEEEeecceeccCCccceeEEEEeCCH-----HHHHHHHHH
Confidence 3455 89999999999998876 488887764 566666544
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-16 Score=159.68 Aligned_cols=198 Identities=19% Similarity=0.202 Sum_probs=136.2
Q ss_pred cCCCCCcHHHHHHHhhHhh-ccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHH--
Q 016668 109 ASENFTSRAVMEAVGSCLT-NKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY-- 185 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~-~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~-- 185 (385)
.+++.++|.+.+++.+... ..| +.|.......|. .++....++++++++|++. +.+..++|+.+....+
T Consensus 77 ~~~~~~~p~i~~~~~~~~~~~~~-tpYq~e~~sqG~---lel~~~~~~~la~l~G~~~----~~l~~~~GA~a~~~~l~~ 148 (481)
T PRK04366 77 SCTMKYNPKINEKVARLPGFAEL-HPLQPEETVQGA---LELMYELQEWLKEITGMDA----VTLQPAAGAHGELTGLLM 148 (481)
T ss_pred ccCCCCCHHHHHHHHhCcchhcC-CCCCChhhhhHH---HHHHHHHHHHHHHHhCCCc----eEEEeCcHHHHHHHHHHH
Confidence 5778889999999876411 112 123211112233 2566668899999999985 4677777876555432
Q ss_pred -H-HhccCCC----EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 186 -T-AILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 186 -~-all~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
. .++++|| +|+++++.|+.+.. .+...|..+..++ ++ +++.+|++++++.+.+ ++++|++.+
T Consensus 149 ~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~--------~~~~~G~~vv~v~--~~-~~~~~D~e~L~~~i~~-~t~~V~v~~ 216 (481)
T PRK04366 149 IRAYHEARGDTKRTEVIVPDSAHGTNPA--------SAAMAGFKVVEIP--SN-EDGLVDLEALKAAVGE-DTAALMLTN 216 (481)
T ss_pred HHHHhhccCcCCCCEEEEcCCccHhHHH--------HHHHcCCEEEEee--cC-CCCCcCHHHHHhhccc-CCeEEEEeC
Confidence 2 3467887 99999887655432 2345676655555 44 3578999999999865 688887766
Q ss_pred CC-CCCC-CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCcccc------EEEEEEeCC
Q 016668 260 SA-YPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR------GGMIFFKKD 329 (385)
Q Consensus 260 s~-~~~~-~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr------gG~I~~~~~ 329 (385)
++ +|.. .|+++|+++|+++|+++++|++|..++. +.. .+-+ |+|++++++||+|.+|. +|+++++++
T Consensus 217 Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~--g~~-~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~ 292 (481)
T PRK04366 217 PNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAIL--GKA-RPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEE 292 (481)
T ss_pred CCCccccchHHHHHHHHHHHcCCEEEEEecChhhhc--ccC-CccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhh
Confidence 65 3444 4899999999999999999999976643 222 3444 89999999999986553 467888764
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=9e-16 Score=154.48 Aligned_cols=193 Identities=18% Similarity=0.122 Sum_probs=130.8
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKP 191 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~p 191 (385)
.+++.+.+++.+.+.... ..|+. ..|.+ ++++...+++.+.+|..-+. -+|.+++| +.|+..++.++++|
T Consensus 46 ~p~~~~~~~~~~~~~~~~-~~Y~~---~~g~~---~lr~~ia~~~~~~~g~~~~~--~~i~it~G~~~al~~~~~~~~~~ 116 (398)
T PRK08363 46 QPPEHMKEAYCRAIKEGH-NYYGP---SEGLP---ELREAIVKREKRKNGVDITP--DDVRVTAAVTEALQLIFGALLDP 116 (398)
T ss_pred CCCHHHHHHHHHHHHcCC-CCCCC---CCCcH---HHHHHHHHHHHHhcCCCCCh--hhEEEeCCHHHHHHHHHHHhCCC
Confidence 478899999887664321 12322 12333 67777777777766743211 14556666 56999999999999
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEec-cccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC-
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD- 267 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~-~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d- 267 (385)
||+|++.+|.|.++.. .+...|.. .+.+ ..+++++.+|++++++.+.. ++|+|++..++||+ ..+
T Consensus 117 gd~Vl~~~p~y~~~~~--------~~~~~g~~--~v~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~ 185 (398)
T PRK08363 117 GDEILIPGPSYPPYTG--------LVKFYGGV--PVEYRTIEEEGWQPDIDDIRKKITE-KTKAIAVINPNNPTGALYEK 185 (398)
T ss_pred CCEEEEcCCCCcchHH--------HHHHcCCE--EEEeccccccCCcCCHHHHHhhCCc-ceEEEEEECCCCCCCcCcCH
Confidence 9999999987765432 23345543 3333 34444557999999998864 68988887777763 444
Q ss_pred --HHHHHHHHHHcCcEEEEeccccccccccCcccCC--CCCC-c-EEEECCCccC--ccccEEEEEE
Q 016668 268 --YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FKYC-D-VVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 268 --l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p--~~ga-D-iv~~S~hK~l--~GprgG~I~~ 326 (385)
+++|.++|+++|+++++|+++. .+.+.+...+. +... . +++.|++|++ +|.|.|++++
T Consensus 186 ~~~~~l~~~a~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~ 251 (398)
T PRK08363 186 KTLKEILDIAGEHDLPVISDEIYD-LMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYF 251 (398)
T ss_pred HHHHHHHHHHHHcCeEEEEhhhhh-hhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEE
Confidence 8899999999999999999974 44443322211 1222 2 5688999995 7889999997
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-16 Score=171.06 Aligned_cols=242 Identities=17% Similarity=0.132 Sum_probs=152.9
Q ss_pred cCCCCCcH-HHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCC-cHHHHHHHHH
Q 016668 109 ASENFTSR-AVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYT 186 (385)
Q Consensus 109 asen~~s~-~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~s-Gs~A~~~a~~ 186 (385)
++..+.++ .|.+++...+.+.+ ++|++.+..+....+.+++ ++++++++||+++.++ +|.+++ +|.|+..+..
T Consensus 41 Aatt~~~~~~V~~~~~~~~~~~~--~np~s~~~~s~~~~~~~e~-aR~~ia~~lga~~~~~--~VvFtsnaT~alnlva~ 115 (805)
T PLN02724 41 AGATLYSESQLEAALADFSSNVY--GNPHSQSDSSMRSSDTIES-ARQQVLEYFNAPPSDY--ACVFTSGATAALKLVGE 115 (805)
T ss_pred CCCCCCCHHHHHHHHHHHHhhcc--CCCCcCcchhhhHHHHHHH-HHHHHHHHhCCCccce--EEEEeCChHHHHHHHHH
Confidence 44445455 44554444444333 4555434445444555554 8999999999976432 345554 5679998888
Q ss_pred Hh-ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-----CCCCCCH--HHHHHHhh---------h
Q 016668 187 AI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-----STGLVDY--DMLEKTAI---------L 249 (385)
Q Consensus 187 al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-----~~~~iD~--d~le~~i~---------~ 249 (385)
++ +++||+|++...+|.+.+. + +..+...|..+..++.+.+. +.+.+|. +++++.++ .
T Consensus 116 ~l~~~~gd~Iv~t~~eH~svl~--~---~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~ 190 (805)
T PLN02724 116 TFPWSSESHFCYTLENHNSVLG--I---REYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDG 190 (805)
T ss_pred HCCCCCCCeEEEeeccccchHH--H---HHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccC
Confidence 88 8999999998777655431 1 11223456666665543111 2234444 66766531 1
Q ss_pred cCCcEEEEcCC--CCCCCCCHHHHHHHHHHc--------CcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCc
Q 016668 250 FRPKLIIAGAS--AYPRDFDYPRMRQIADAV--------GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLR 317 (385)
Q Consensus 250 ~~pklIi~~~s--~~~~~~dl~~I~~ia~~~--------ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~ 317 (385)
.++++|++... .+|...|++.|.++++.. ++++++|++|++|.. +-.+. ++|++++|+||++.
T Consensus 191 ~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~-----piDv~~~~~Dfl~~S~HK~~G 265 (805)
T PLN02724 191 EAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTS-----PPDLSRYPADFVVVSFYKIFG 265 (805)
T ss_pred CCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCC-----CCChhhcCCCEEEEecceecc
Confidence 24578877543 357889999876665543 368999999988754 22333 79999999999987
Q ss_pred cccE-EEEEEeCCCCchhHHHHHHhhccC-----------------------CCccCCChHHHHHHHHHHHHHhhCch
Q 016668 318 GPRG-GMIFFKKDPVLGVELESAINNAVF-----------------------PGLQGGPHNHTIGGLAVCLKHAQSPE 371 (385)
Q Consensus 318 Gprg-G~I~~~~~~~~~~~~~~~i~~~~f-----------------------p~~qg~p~~~~iaala~Al~e~~~~~ 371 (385)
||.| |+++.+++ +.+.+....+ -...|+++...+++++.|++.+..-+
T Consensus 266 gP~G~G~L~vr~~------~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig 337 (805)
T PLN02724 266 YPTGLGALLVRRD------AAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLT 337 (805)
T ss_pred CCCCceEEEEehh------hhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhC
Confidence 7997 88888874 3333321111 11346888999999999998775533
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=159.35 Aligned_cols=174 Identities=21% Similarity=0.253 Sum_probs=128.2
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
||...|| +++..++||+ .+++++|.+. .+.+.||+.|+..++ ++++|||+|++.++.|++.... +
T Consensus 43 ~~~y~r~--~~pt~~~le~----~la~l~g~~~-----~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~-~-- 107 (366)
T PRK08247 43 GFDYSRT--GNPTRGVLEQ----AIADLEGGDQ-----GFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRL-F-- 107 (366)
T ss_pred CccccCC--CCchHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHH-H--
Confidence 4555554 6777777776 5889999986 367889999988765 6889999999999877653211 0
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
...+...|..+. .++. .|++++++.+++ ++|+|+++.|++|. ..|+++|.++|+++|+++++|+++..
T Consensus 108 -~~~~~~~G~~v~--~vd~------~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~ 177 (366)
T PRK08247 108 -EEHWKKWNVRFV--YVNT------ASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYT 177 (366)
T ss_pred -HHHhhccCceEE--EECC------CCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 012234565433 3222 489999998865 78999998888873 46899999999999999999999855
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCccc---cEEEEEEeCCCCchhHHHHHHh
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~~~~~i~ 341 (385)
++. ..|++ ++|++++|++|++.|+ .+|+++++++ ++.+++.
T Consensus 178 ~~~-----~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~-----~l~~~~~ 222 (366)
T PRK08247 178 PVL-----QRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQ-----ELCERLA 222 (366)
T ss_pred ccc-----cCchhcCCcEEEeecceeccCCCceeeeEEecChH-----HHHHHHH
Confidence 432 23455 7999999999999876 6798888754 5656554
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-16 Score=156.54 Aligned_cols=200 Identities=10% Similarity=0.043 Sum_probs=138.9
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC-C-CCCcceeecCCcHHHHHHHHHHh
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-E-NKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~-~-~~~~~~V~~~sGs~A~~~a~~al 188 (385)
.+++.|.+.+.+.+.+...+ ++|.+ .|.. . ++|+.+++|+++++|++ . ++. ..+.+++||+||+.++.+.
T Consensus 50 tt~~~p~~~~~~~~~l~~~~--~np~s---~~~~-~-~le~~~~~~la~llg~~~~~~~~-~g~~TsGgTEAn~~al~~a 121 (431)
T TIGR01788 50 TTWMEPEARKLMDETINKNM--IDKDE---YPQT-A-EIENRCVNMLADLWHAPAKDAEA-VGTSTIGSSEAIMLGGLAM 121 (431)
T ss_pred CCCCCHHHHHHHHHHHhcCC--CCccc---CccH-H-HHHHHHHHHHHHHhCCCCCCCCC-eEEEechHHHHHHHHHHHH
Confidence 46678889999988875433 45543 2333 2 78889999999999998 2 222 2234577889999888665
Q ss_pred cc--------CC-----CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEE
Q 016668 189 LK--------PH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255 (385)
Q Consensus 189 l~--------pG-----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklI 255 (385)
.+ .| -+|++++.+| .+.. +.+...|..+..++ ++++++.+|+++|++.+++ ++.+|
T Consensus 122 r~~~~~~~~~~g~~~~~~~ii~s~~~H---~sv~-----ka~~~lg~~v~~i~--~d~~~~~vd~~~L~~~i~~-~t~lV 190 (431)
T TIGR01788 122 KWRWRKRMEAAGKPTDKPNLVMGSNVQ---VCWE-----KFARYFDVELREVP--MDPGRYVIDPEQVVEAVDE-NTIGV 190 (431)
T ss_pred HHHHHHHHHhcCCCCCCcEEEEcCcch---HHHH-----HHHHHcCceeEEEe--cCCCceeeCHHHHHHHHhh-CCeEE
Confidence 31 12 2577766544 2211 23345565555555 6643458999999999965 57777
Q ss_pred EEc--CCCCCCCCCHHHHHHHHHHc------CcEEEEeccccccccc--cCcccCCC--CCCcEEEECCCccCccccE-E
Q 016668 256 IAG--ASAYPRDFDYPRMRQIADAV------GALLMMDMAHISGLVA--ASVVADPF--KYCDVVTTTTHKSLRGPRG-G 322 (385)
Q Consensus 256 i~~--~s~~~~~~dl~~I~~ia~~~------ga~livD~ah~~Gli~--~g~~~~p~--~gaDiv~~S~hK~l~Gprg-G 322 (385)
++. .+.++...|+++|+++|+++ |+++++|++|+.+... .+..+..+ .++|.++.|.||++.||.| |
T Consensus 191 ~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G 270 (431)
T TIGR01788 191 VCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVG 270 (431)
T ss_pred EEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcE
Confidence 654 44567889999999999999 9999999999744321 12223333 3899999999999889998 8
Q ss_pred EEEEeCC
Q 016668 323 MIFFKKD 329 (385)
Q Consensus 323 ~I~~~~~ 329 (385)
+++.+++
T Consensus 271 ~l~~r~~ 277 (431)
T TIGR01788 271 WVIWRDE 277 (431)
T ss_pred EEEEeCh
Confidence 8888874
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-16 Score=156.11 Aligned_cols=231 Identities=23% Similarity=0.245 Sum_probs=151.6
Q ss_pred cccCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 107 LIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 107 Liasen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G-~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
...|++|. +|.|++++...+ ++|..+..++|...| .+...++| +.+++++|.+. .+.++||+.||
T Consensus 49 ~~~sn~ylgl~~~p~v~~a~~~~~-~~~~~~~~~s~~~~g~~~~~~~Le----~~la~~~g~~~-----~l~~~sG~~an 118 (402)
T TIGR01821 49 VWCSNDYLGMGQHPEVLQAMHETL-DKYGAGAGGTRNISGTNIPHVELE----AELADLHGKES-----ALVFTSGYVAN 118 (402)
T ss_pred EeEccCcCCCCCCHHHHHHHHHHH-HHcCCCCcchhhhhCCcHHHHHHH----HHHHHHhCCCe-----EEEECchHHHH
Confidence 45788886 899999998776 456556555654444 34344454 46889999754 47789999999
Q ss_pred HHHHHHhcc--CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh---cCCcEEE
Q 016668 182 FEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLII 256 (385)
Q Consensus 182 ~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~---~~pklIi 256 (385)
..++..+.+ +||.|+.....|++... .+...|..+. .++ ..|++++++.++. .++++|+
T Consensus 119 ~~ai~~l~~~~~~~~v~~~~~~h~s~~~--------~~~~~g~~~~--~~~------~~d~~~l~~~l~~~~~~~~~~v~ 182 (402)
T TIGR01821 119 DATLATLAKIIPGCVIFSDELNHASMIE--------GIRHSGAEKF--IFR------HNDVAHLEKLLQSVDPNRPKIIA 182 (402)
T ss_pred HHHHHHhhCCCCCCEEEEcchHhHHHHH--------HHHHcCCeEE--EEC------CCCHHHHHHHHHhccCCCCeEEE
Confidence 999988865 78888776554432211 2234454322 222 2477888887753 2568888
Q ss_pred EcCCCC--CCCCCHHHHHHHHHHcCcEEEEecccccccccc-Cc-ccC--CC-CCCcEEEECCCccCccccEEEEEEeCC
Q 016668 257 AGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VAD--PF-KYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (385)
Q Consensus 257 ~~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~-~~~--p~-~gaDiv~~S~hK~l~GprgG~I~~~~~ 329 (385)
++++++ |...|+++|.++|+++|++|++|++|+.|+... |. ... .+ +..|+++.|++|.|+ ..||++++++
T Consensus 183 ~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~GG~i~~~~- 260 (402)
T TIGR01821 183 FESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFG-VVGGYIAASR- 260 (402)
T ss_pred EcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhc-cCCceeecCH-
Confidence 877654 567899999999999999999999998776431 11 111 11 246889999999984 4668888876
Q ss_pred CCchhHHHHHHhhccCCC-ccCCChHHHHHHHHHHHHHhhCc
Q 016668 330 PVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 330 ~~~~~~~~~~i~~~~fp~-~qg~p~~~~iaala~Al~e~~~~ 370 (385)
++.+.+.....+. ..++.++..+++...+++.+.+.
T Consensus 261 -----~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~ 297 (402)
T TIGR01821 261 -----KLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKES 297 (402)
T ss_pred -----HHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcC
Confidence 5666665432221 22334444555656677665443
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-16 Score=157.15 Aligned_cols=177 Identities=12% Similarity=0.076 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhc-cCCCEEeecCCCCCccccCCccccccccccCcceEE
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all-~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (385)
+|++.+.+++.+.+|.+.+ + -+|..++|+. |+..++.+++ +|||+|++++|.|..+.. .+...|..+
T Consensus 111 ~LR~aia~~~~~~~g~~~~-~-~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~--------~~~~~g~~~- 179 (407)
T PLN02368 111 GVRKEVAEFIERRDGYPSD-P-ELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSA--------TISLLGGTL- 179 (407)
T ss_pred HHHHHHHHHHHHhcCCCCC-h-hhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHH--------HHHHcCCEE-
Confidence 6888788888888885421 1 2566777765 9988999987 799999999997755432 345666644
Q ss_pred EEeccccCC-CCCCCHHHHHHHhhhc-----CCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccc
Q 016668 226 SMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVA 294 (385)
Q Consensus 226 ~i~~~~~~~-~~~iD~d~le~~i~~~-----~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~ 294 (385)
++++++++ ++.+|++++++.++.. ++|+|+++.|+||+ .. .+++|.++|+++|++||+|+++ ..+++
T Consensus 180 -v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y-~~l~y 257 (407)
T PLN02368 180 -VPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVY-QQNIY 257 (407)
T ss_pred -EEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccc-ccccc
Confidence 44445543 4589999999988531 57888887788773 34 3678888999999999999996 56665
Q ss_pred cCc--ccCC------C----C-CCc-EEEECCCccC---ccccEEEEEE---eCCCCchhHHHHHHhhc
Q 016668 295 ASV--VADP------F----K-YCD-VVTTTTHKSL---RGPRGGMIFF---KKDPVLGVELESAINNA 343 (385)
Q Consensus 295 ~g~--~~~p------~----~-gaD-iv~~S~hK~l---~GprgG~I~~---~~~~~~~~~~~~~i~~~ 343 (385)
.+. +++. + + +.. |++.|++|+| +|+|.|+++. ++ ++.+.+...
T Consensus 258 ~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~------~li~~~~~~ 320 (407)
T PLN02368 258 QDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP------KTVEEIYKV 320 (407)
T ss_pred CCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCH------HHHHHHHHH
Confidence 442 2221 1 1 112 5789999986 6999999985 44 566666554
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-16 Score=155.10 Aligned_cols=230 Identities=22% Similarity=0.243 Sum_probs=148.2
Q ss_pred cccCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 107 LIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 107 Liasen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G-~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
.++|.||. +|.|++++...+. ++..+..++|.+.| .+...++| +.+++++|.+. .+.++||+.||
T Consensus 50 ~~~s~dylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~l~----~~la~~~g~~~-----~~~~~sG~~an 119 (407)
T PRK09064 50 VWCSNDYLGMGQHPKVIEAMIEALD-RCGAGAGGTRNISGTNHYHVELE----RELADLHGKEA-----ALVFTSGYVSN 119 (407)
T ss_pred EEECCCCcCCCCCHHHHHHHHHHHH-HcCCCCCCcCcCccCHHHHHHHH----HHHHHHhCCCc-----EEEECcHHHHH
Confidence 45788775 8999999987764 45545555554434 44444555 46788898643 47789999999
Q ss_pred HHHHHHhcc--CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh---cCCcEEE
Q 016668 182 FEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLII 256 (385)
Q Consensus 182 ~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~---~~pklIi 256 (385)
..++..+.. ++|.|+.....|++.. ..+...+..+. .++ ..|++++++.++. .++++|+
T Consensus 120 ~~ai~~l~~~~~~~~i~~~~~~h~s~~--------~~~~~~~~~~~--~~~------~~d~~~le~~l~~~~~~~~~~v~ 183 (407)
T PRK09064 120 DATLSTLAKLIPDCVIFSDELNHASMI--------EGIRRSRCEKH--IFR------HNDVAHLEELLAAADPDRPKLIA 183 (407)
T ss_pred HHHHHHHhCCCCCCEEEEeCcchHHHH--------HHHHHcCCcEE--EEC------CCCHHHHHHHHHhccCCCCeEEE
Confidence 998888754 7877776654443221 12233443322 222 2478888888753 3578888
Q ss_pred EcCCCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccc-cCc-cc--CCC-CCCcEEEECCCccCccccEEEEEEeCC
Q 016668 257 AGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASV-VA--DPF-KYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (385)
Q Consensus 257 ~~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~-~g~-~~--~p~-~gaDiv~~S~hK~l~GprgG~I~~~~~ 329 (385)
++++.+ |...|+++|.++|+++|++|++|++|+.|+.. .|. .. ..+ +..|+++.|++|.| |..||++++++
T Consensus 184 ~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~-g~~GG~~~~~~- 261 (407)
T PRK09064 184 FESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAF-GVMGGYIAGSA- 261 (407)
T ss_pred EeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhh-hccCceEecCH-
Confidence 876654 45679999999999999999999999877542 121 11 111 24589999999987 56789998876
Q ss_pred CCchhHHHHHHhhccCCCc-cCCChHHHHHHHHHHHHHhhC
Q 016668 330 PVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 330 ~~~~~~~~~~i~~~~fp~~-qg~p~~~~iaala~Al~e~~~ 369 (385)
++.+.+.....+.. ..+.++...++...+++.+..
T Consensus 262 -----~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~ 297 (407)
T PRK09064 262 -----ALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKE 297 (407)
T ss_pred -----HHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhc
Confidence 56666644322221 223334445555567766544
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=152.28 Aligned_cols=207 Identities=19% Similarity=0.173 Sum_probs=136.1
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pG 192 (385)
+++.+.+++...+......+|+. ..|.+ .+++..++++.+.+|.+.+ +.-+|..++|+ +|+..++.++++||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lR~~ia~~l~~~~~~~~~-~~~~I~it~G~~~al~~~~~~l~~~g 119 (403)
T PRK08636 47 TPQHIIDKLCESAQKPKTHGYSV---SKGIY---KLRLAICNWYKRKYNVDLD-PETEVVATMGSKEGYVHLVQAITNPG 119 (403)
T ss_pred CCHHHHHHHHHHhcCCccCCCCC---CCCCH---HHHHHHHHHHHHHhCCCCC-CCCeEEECCChHHHHHHHHHHhCCCC
Confidence 46667777655443222234544 23554 6777788888888886532 11146677776 49999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHH----HHHhhh--cCCcEEEEcCCCCCC--
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML----EKTAIL--FRPKLIIAGASAYPR-- 264 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~l----e~~i~~--~~pklIi~~~s~~~~-- 264 (385)
|.|++.+|.|.++.. .+...|..+..++.+.+ +++.+|++.+ ++.++. .++++|+++.|+||+
T Consensus 120 d~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~ 190 (403)
T PRK08636 120 DVAIVPDPAYPIHSQ--------AFILAGGNVHKMPLEYN-EDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTA 190 (403)
T ss_pred CEEEEcCCCCcchHH--------HHHhcCCEEEEEecccc-ccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCc
Confidence 999999997765432 23456765544443222 2357887754 555543 357888888778773
Q ss_pred CC---CHHHHHHHHHHcCcEEEEeccccccccccCc-ccCC--CCC-Cc--EEEECCCccC--ccccEEEEEEeCCCCch
Q 016668 265 DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FKY-CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (385)
Q Consensus 265 ~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p--~~g-aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~ 333 (385)
.. .+++|.++|++++++||+|+++ ..+.+.+. .++. ++. .| +++.|++|++ +|.|.|++++++
T Consensus 191 ~~s~~~~~~l~~~a~~~~~~II~De~Y-~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~----- 264 (403)
T PRK08636 191 TVEKSFYERLVALAKKERFYIISDIAY-ADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNK----- 264 (403)
T ss_pred cCCHHHHHHHHHHHHHcCcEEEEeccc-hhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCH-----
Confidence 33 3678889999999999999996 45554432 1211 222 24 4578999997 789999999877
Q ss_pred hHHHHHHhhc
Q 016668 334 VELESAINNA 343 (385)
Q Consensus 334 ~~~~~~i~~~ 343 (385)
++.+.+...
T Consensus 265 -~li~~~~~~ 273 (403)
T PRK08636 265 -KLVGALKKI 273 (403)
T ss_pred -HHHHHHHHH
Confidence 566655443
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=150.21 Aligned_cols=206 Identities=14% Similarity=0.094 Sum_probs=139.7
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhc
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAIL 189 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all 189 (385)
+..+++.+.+++...... ...|+. ..|.+ ++++...+++.+.+|.+-+ ...+|.+++|+. |+..++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~--~~~Y~~---~~G~~---~lr~aia~~~~~~~g~~~~-~~~~Iiit~Gs~~ai~~~~~~~~ 81 (350)
T TIGR03537 11 KEPTPPFIRKALIDAVPE--VSQYPS---ALGTK---ALREAISGWFERRFGVKLD-PDAQVLPSAGSKEAIFHFPLVFI 81 (350)
T ss_pred CCCCCHHHHHHHHHHHhc--cCCCCC---CCCCH---HHHHHHHHHHHHHhCCCCC-CCCcEEEcCChHHHHHHHHHHHc
Confidence 334578888888765432 223443 23444 7788788888887785431 111567778764 9999999999
Q ss_pred cCC---CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-
Q 016668 190 KPH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR- 264 (385)
Q Consensus 190 ~pG---D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~- 264 (385)
++| |+|++.+|.|.++.. .+...|..+ ++++++++ ...+|++++++++.+ ++|+|+++.++||+
T Consensus 82 ~~g~~~d~Vl~~~p~y~~~~~--------~~~~~g~~~--~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG 150 (350)
T TIGR03537 82 DPEEDRRRVIFGTPGYPVYER--------GALFAGGEP--TAVKLKKEDGFLLRLEKVEKSILE-ETKIVWINYPHNPTG 150 (350)
T ss_pred CCCCCCceEEEcCCCCcchHH--------HHHhcCCEE--EEcccCcccCCccCHHHHHHhhhh-ccEEEEEeCCCCCcC
Confidence 988 699999986654432 345667654 44445533 346899999998865 78999888787763
Q ss_pred -CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCc--EEEECCCccC--ccccEEEEEEeCCCCchhH
Q 016668 265 -DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVE 335 (385)
Q Consensus 265 -~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~ 335 (385)
..+ +++|.++|+++|+++|+|+++. .+...+..++... ..| +++.|++|++ +|.|.|+++.++ +
T Consensus 151 ~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~------~ 223 (350)
T TIGR03537 151 ATAPRSYLKETIAMCREHGIILCSDECYT-EIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDE------K 223 (350)
T ss_pred cccCHHHHHHHHHHHHHcCcEEEEecccc-ccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCH------H
Confidence 456 8889999999999999999974 3333322222122 223 6788999986 688999998766 5
Q ss_pred HHHHHhhc
Q 016668 336 LESAINNA 343 (385)
Q Consensus 336 ~~~~i~~~ 343 (385)
+.+++...
T Consensus 224 ~~~~~~~~ 231 (350)
T TIGR03537 224 LISFLRKL 231 (350)
T ss_pred HHHHHHHH
Confidence 66666543
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=158.45 Aligned_cols=174 Identities=19% Similarity=0.187 Sum_probs=126.3
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccc
Q 016668 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (385)
Q Consensus 134 ~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (385)
|...|+ +++..++||+ .+++++|.+. .+.+.||+.|+..++ ++++|||+|+++++.|++.....
T Consensus 42 ~~y~r~--~~p~~~~Le~----~lA~l~g~~~-----~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~---- 105 (377)
T PRK07671 42 YEYSRT--GNPTRAALEE----LIAVLEGGHA-----GFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVM---- 105 (377)
T ss_pred CCcCCC--CChHHHHHHH----HHHHHhCCCc-----eEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHH----
Confidence 444444 6777777776 5889999876 366889998877654 68899999999998776432110
Q ss_pred ccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccccc
Q 016668 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~G 291 (385)
...+...|..+. .++ ..|++++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|+++..+
T Consensus 106 ~~~~~~~G~~v~--~v~------~~d~~~l~~ai~~-~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 106 TKVLNRFGIEHT--FVD------TSNLEEVEEAIRP-NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred HHHHhcCCeEEE--EEC------CCCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 011233455433 322 2489999999865 7899999888776 5689999999999999999999998543
Q ss_pred ccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhh
Q 016668 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 292 li~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.. ..|++ ++|++++|++|++.||. +|+++++++ ++.+++..
T Consensus 177 ~~-----~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~-----~l~~~~~~ 221 (377)
T PRK07671 177 YW-----QSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSP-----ELAEDLHF 221 (377)
T ss_pred cc-----CChhhhCCeEEEecCcccccCCccceeEEEEeCcH-----HHHHHHHH
Confidence 22 24556 88999999999998884 687877665 56665543
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-16 Score=153.80 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=121.8
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
.++++++++|.+. .+.++||+.|+..++.++ ++|||+|+++++.|.+.. ..+...|.. ++.+++
T Consensus 36 ~e~~la~~~g~~~-----~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~--------~~~~~~G~~--~v~~d~ 100 (375)
T PRK11706 36 CQQWLEQRFGSAK-----VLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTA--------NAFVLRGAK--IVFVDI 100 (375)
T ss_pred HHHHHHHHhCCCe-----EEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHH--------HHHHHcCCE--EEEEec
Confidence 3346888899975 356778888988877766 799999999998665432 134456764 445557
Q ss_pred cCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEE
Q 016668 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTT 310 (385)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~ 310 (385)
+++++.+|++++++.+++ ++|+|++.. .++...|+++|.++|+++|+++|+|++|+.|....+. ++. ..|+.++
T Consensus 101 d~~~~~~d~~~le~~i~~-~tk~i~~~~-~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~---~~g~~~~~~~~ 175 (375)
T PRK11706 101 RPDTMNIDETLIEAAITP-KTRAIVPVH-YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGR---ALGTIGHIGCF 175 (375)
T ss_pred CCCcCCcCHHHHHHhcCC-CCeEEEEeC-CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCe---eeecCcCEEEE
Confidence 766678999999999865 789887654 3677789999999999999999999999877543332 222 4688889
Q ss_pred CCC--ccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 311 TTH--KSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 311 S~h--K~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
|+| |++....||+++++++ ++.+++.
T Consensus 176 Sf~~~K~l~~g~gG~~~~~~~-----~~~~~~~ 203 (375)
T PRK11706 176 SFHETKNYTAGEGGALLINDP-----ALIERAE 203 (375)
T ss_pred eCCCCccccccCCeEEEECCH-----HHHHHHH
Confidence 999 9986566777777765 5655443
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=151.98 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=150.6
Q ss_pred cccCChHHHHHHHHHHHHh-----hhccccccC--CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 83 LGEADPEVCEIITKEKERQ-----FKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 83 l~~~dp~~~~~i~~e~~~~-----~~~l~Lias--en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
+..+.++++..+.+..... +..++|-.+ +..+++.+.+++...+.. ...|+. ..|.+ ++++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~--~~~Y~~---~~G~~---~lr~~ia~ 76 (396)
T PRK09147 5 LDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLDG--LASYPT---TAGLP---ALREAIAA 76 (396)
T ss_pred hhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhhh--hcCCCC---CCCCH---HHHHHHHH
Confidence 3444554444444433322 233444333 334578888888766532 123443 23444 67777788
Q ss_pred HHHHHcCCC-CCCCcceeecCCcH-HHHHHHHHHhccC---CCEEeecCCCCCccccCCccccccccccCcceEEEEecc
Q 016668 156 RALAAFNLD-ENKWGVNVQPLSGS-PANFEVYTAILKP---HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (385)
Q Consensus 156 ~la~lfg~~-~~~~~~~V~~~sGs-~A~~~a~~all~p---GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~ 230 (385)
++.+.+|.+ .+ ...+|..++|+ +|+..++.++++| ||.|++++|.+.++.. .....|..+..++
T Consensus 77 ~~~~~~g~~~~~-~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~~~vp-- 145 (396)
T PRK09147 77 WLERRYGLPALD-PATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEG--------AALLAGAEPYFLN-- 145 (396)
T ss_pred HHHHHhCCCcCC-ccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHH--------HHHhcCCEEEEec--
Confidence 888888854 21 10146666765 5999999999999 9999999987654321 2345676544444
Q ss_pred ccCCC-CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCccc--CCC
Q 016668 231 LDEST-GLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF 302 (385)
Q Consensus 231 ~~~~~-~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~ 302 (385)
+++++ +.+|++++++.+.. ++|+|+++.++||+ .+ ++++|.++|++++++||+|+++ ..+.+.+..+ ..+
T Consensus 146 ~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~ 223 (396)
T PRK09147 146 CDPANNFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECY-SEIYFDEAAPPLGLL 223 (396)
T ss_pred cCccccCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccc-cccccCCCCCCchhh
Confidence 55443 47999999887754 78999988888873 33 4788889999999999999997 4444433211 111
Q ss_pred ----C-C---Cc--EEEECCCcc--CccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 303 ----K-Y---CD--VVTTTTHKS--LRGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 303 ----~-g---aD--iv~~S~hK~--l~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
. + .| +++.|++|. ++|.|.|++++++ ++.+++..
T Consensus 224 ~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~------~l~~~~~~ 269 (396)
T PRK09147 224 EAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDA------ALLKKFLL 269 (396)
T ss_pred hhccccCccccccEEEEeccccccCCccceeeeecCCH------HHHHHHHH
Confidence 0 1 13 788999996 5889999999887 56666654
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-15 Score=150.98 Aligned_cols=230 Identities=16% Similarity=0.134 Sum_probs=144.9
Q ss_pred ccCChHHHHHHHHHHHHhh---hccccccCC--CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 84 GEADPEVCEIITKEKERQF---KSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 84 ~~~dp~~~~~i~~e~~~~~---~~l~Liase--n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
+.++|..|..++.-..++. +.++|-..+ ..+++.+++++...+.......|+. ..|. .++ +++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~---~~g~---~~l----r~~ia 76 (380)
T PRK06225 7 AKVPPSGFKTSNEFFDYVFKDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPP---PEGF---PEL----RELIL 76 (380)
T ss_pred cccCcchhhhHHHHHHHHhhcCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCC---Ccch---HHH----HHHHH
Confidence 3455555555555333332 334444333 3568999999887765432223332 1122 233 45678
Q ss_pred HHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCC
Q 016668 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~i 238 (385)
+++|+++++ .+.+.+++.|+..++.+++++||+|++.+|.+..+. ..+...|..+..++...+++++.+
T Consensus 77 ~~l~~~~~~---v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~--------~~~~~~g~~~~~v~~~~~~~~~~~ 145 (380)
T PRK06225 77 KDLGLDDDE---ALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIID--------NFASRFGAEVIEVPIYSEECNYKL 145 (380)
T ss_pred HhcCCCCCc---EEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH--------HHHHHhCceEEeeccccccCCccC
Confidence 889998741 234445567999999999999999999987653221 123456665444442212223579
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCccc-CCCC-CCcEEEEC
Q 016668 239 DYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK-YCDVVTTT 311 (385)
Q Consensus 239 D~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~-~p~~-gaDiv~~S 311 (385)
|++++++.+.. ++|+|++..++||+ .. ++++|.++|+++|+++|+|+++. ++.. +..+ ..++ ...+++.|
T Consensus 146 d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~-~~~~~~~~~~~~~i~~~s 222 (380)
T PRK06225 146 TPELVKENMDE-NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYR-DFAR-EHTLAAEYAPEHTVTSYS 222 (380)
T ss_pred CHHHHHhhcCC-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHH-HHhc-cCCchhhcCCCCEEEEee
Confidence 99999998865 68888776676653 33 58899999999999999999863 3321 1111 1112 23477889
Q ss_pred CCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 312 THKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 312 ~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
++|+| +|.|.|++++++ ++.+.+...
T Consensus 223 ~SK~~g~~G~RiG~i~~~~------~l~~~~~~~ 250 (380)
T PRK06225 223 FSKIFGMAGLRIGAVVATP------DLIEVVKSI 250 (380)
T ss_pred chhhcCCccceeEEEecCH------HHHHHHHHH
Confidence 99998 467889999976 566666543
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=157.38 Aligned_cols=169 Identities=19% Similarity=0.245 Sum_probs=120.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+++|+ .+++++|.+. .+.++||+.|+..++.++++|||+|++.++.+++.... + ...+...|
T Consensus 43 ~~p~~~~L~~----~lA~l~g~~~-----~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~-~---~~~~~~~G 109 (376)
T PRK06460 43 ANPTVLELTK----KIVELENAEM-----GVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRF-F---TDYLKNWG 109 (376)
T ss_pred CCccHHHHHH----HHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHH-H---HHHHHhhC
Confidence 5565666665 6889999976 35678999999999999999999999987665432210 0 01234556
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+..++ .+ |.+.+++.++ .++|+|+++.++|| ...|+++|.++|+++|+++++|++|..++. .
T Consensus 110 ~~v~~~~--~~------~~~~l~~~~~-~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-----~ 175 (376)
T PRK06460 110 VNVDASN--PG------SDNIIEKAKS-KRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-----Q 175 (376)
T ss_pred cEEEEEC--CC------CHHHHHHhcC-CCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-----C
Confidence 5544333 22 2344555443 47899999888876 578999999999999999999999864421 1
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhhc
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
.+++ ++|+++.|+||+|.|++ +|++++++ ++.+++...
T Consensus 176 ~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~------~l~~~l~~~ 217 (376)
T PRK06460 176 KPLELGADIVVHSASKFLAGHNDVIAGLAAGYG------KLLNVIDQM 217 (376)
T ss_pred ChhhcCCCEEEeecceeccCCCCceEEEEecCH------HHHHHHHHH
Confidence 3344 78999999999998875 79888876 566666543
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-15 Score=149.74 Aligned_cols=238 Identities=17% Similarity=0.129 Sum_probs=151.4
Q ss_pred hhhcccCChHHHHHHHHHHHH-h---hhcccccc--CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKER-Q---FKSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~-~---~~~l~Lia--sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~ 153 (385)
++++..+++..+..+.+...+ + ..-++|-. +...+++.+.+++...+.+.. ..|+.. .| ...+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~---~g---~~~lr~~i 77 (393)
T PRK05764 5 SKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGK-TKYTPA---AG---IPELREAI 77 (393)
T ss_pred hhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CCcCCC---CC---hHHHHHHH
Confidence 556666666654433322221 1 12233332 233446888888877765422 234331 23 34777777
Q ss_pred HHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
++++.+.+|...+ . .++.+++| ++|+..++.+++++||+|++.+|.|+++.. .+...|..+..++ .+
T Consensus 78 a~~~~~~~~~~~~-~-~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~~~~--~~ 145 (393)
T PRK05764 78 AAKLKRDNGLDYD-P-SQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPE--------MVKLAGGVPVFVP--TG 145 (393)
T ss_pred HHHHHHHhCCCCC-H-HHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHH--------HHHHcCCEEEEEe--cC
Confidence 7777777665321 1 13445555 579999999999999999999987655421 2345566544444 54
Q ss_pred CC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcc-cC--CC-
Q 016668 233 ES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-AD--PF- 302 (385)
Q Consensus 233 ~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~--p~- 302 (385)
++ ++.+|++++++.++. ++++|++..++||. .. ++++|.++|+++|+++++|++|. .+...+.. +. .+
T Consensus 146 ~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~ 223 (393)
T PRK05764 146 EENGFKLTVEQLEAAITP-KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYE-KLVYDGAEFTSIASLS 223 (393)
T ss_pred cccCCcCCHHHHHHhhCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEecccc-ceeeCCCCcccHHHcC
Confidence 33 457999999998854 68888887777663 33 48899999999999999999974 44443321 11 11
Q ss_pred -C--CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhcc
Q 016668 303 -K--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAV 344 (385)
Q Consensus 303 -~--gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~ 344 (385)
+ +.++++.|++|++ +|+|.|++++++ ++.+.+....
T Consensus 224 ~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~------~~~~~~~~~~ 264 (393)
T PRK05764 224 PELRDRTITVNGFSKAYAMTGWRLGYAAGPK------ELIKAMSKLQ 264 (393)
T ss_pred CCCcCCEEEEecCcccccCccceeEEEecCH------HHHHHHHHHH
Confidence 2 2458899999986 677889999876 5666665443
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=161.65 Aligned_cols=160 Identities=22% Similarity=0.249 Sum_probs=119.0
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
|++..+.+|+ ++++++|.+. .+.++||+.|+.+ +..+++|||+|+++++.|+++..... ..+...|
T Consensus 131 gnpt~~aLE~----~lA~leg~e~-----ai~~~SG~aAi~~-il~ll~~GD~VI~~~~~y~~t~~ll~----~~l~~~G 196 (464)
T PLN02509 131 GNPTRDALES----LLAKLDKADR-----AFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLS----QVVPRSG 196 (464)
T ss_pred CCHHHHHHHH----HHHHHhCCCE-----EEEeCcHHHHHHH-HHHHhCCCCEEEEcCCchhhHHHHHH----HHHHHCC
Confidence 7887777775 6788888765 3667889888754 44689999999999988766421000 0123445
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+. .++ ..|++++++.+.+ ++|+|+++.+++| ...|+++|+++|+++|+++++|++|+.++. .
T Consensus 197 ~~v~--~vd------~~d~e~l~~ai~~-~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~-----~ 262 (464)
T PLN02509 197 VVVK--RVN------TTNLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL-----S 262 (464)
T ss_pred eEEE--EeC------CCCHHHHHHhCCc-CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc-----C
Confidence 5433 322 2478999998864 7899999887765 577999999999999999999999977653 2
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeCC
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~ 329 (385)
.|++ ++|++++|++|++.|+. ||+++++++
T Consensus 263 ~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~ 296 (464)
T PLN02509 263 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 296 (464)
T ss_pred ChhhcCCcEEEecCcccccCCCccceeEEEeccH
Confidence 4555 89999999999998864 688887765
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-16 Score=156.25 Aligned_cols=229 Identities=20% Similarity=0.186 Sum_probs=148.4
Q ss_pred ccCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHH
Q 016668 108 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (385)
Q Consensus 108 iasen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G~-~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~ 182 (385)
..+++|. +|.|++++...+. ++..+..++|.+.|. +...+|| +++++++|.+. .+.++||+.||.
T Consensus 51 ~~sn~yl~l~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~Le----~~la~~~g~~~-----~i~~~sG~~a~~ 120 (410)
T PRK13392 51 WCSNDYLGMGQHPDVIGAMVDALD-RYGAGAGGTRNISGTSHPHVLLE----RELADLHGKES-----ALLFTSGYVSND 120 (410)
T ss_pred EECCCccCCCCCHHHHHHHHHHHH-HcCCCCchhhhcccChHHHHHHH----HHHHHHhCCCC-----EEEECcHHHHHH
Confidence 3566664 8999999987664 455454455544454 2344455 46889999754 577899999999
Q ss_pred HHHHHhc--cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh---cCCcEEEE
Q 016668 183 EVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIA 257 (385)
Q Consensus 183 ~a~~all--~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~---~~pklIi~ 257 (385)
.++..+. .|||.|+.....|++.. ..+...|..+..++ . .|.+.+++.++. .++|+|++
T Consensus 121 ~~i~~l~~~~~g~~vi~~~~~h~s~~--------~~~~~~g~~~~~~~--~------~d~~~l~~~l~~~~~~~t~~v~i 184 (410)
T PRK13392 121 AALSTLGKLLPGCVILSDALNHASMI--------EGIRRSGAEKQVFR--H------NDLADLEEQLASVDPDRPKLIAF 184 (410)
T ss_pred HHHHHHhcCCCCCEEEEehhhhHHHH--------HHHHHcCCeEEEEe--C------CCHHHHHHHHHhccCCCCEEEEE
Confidence 9888775 48998887665554321 12345565443332 1 255566665532 36789988
Q ss_pred cCCCCC--CCCCHHHHHHHHHHcCcEEEEecccccccccc-Cc-cc---CCCCCCcEEEECCCccCccccEEEEEEeCCC
Q 016668 258 GASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VA---DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP 330 (385)
Q Consensus 258 ~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~-~~---~p~~gaDiv~~S~hK~l~GprgG~I~~~~~~ 330 (385)
++++++ ...|+++|.++|+++|+++++|++|..|+... |. .. ...+..|+++.|++|+|++ .||++++++
T Consensus 185 ~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~-~GG~~~~~~-- 261 (410)
T PRK13392 185 ESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGC-LGGYIAASA-- 261 (410)
T ss_pred eCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhc-ccchhhcCH--
Confidence 877654 57899999999999999999999998776421 11 11 1123568999999999854 468888776
Q ss_pred CchhHHHHHHhhccCCC-ccCCChHHHHHHHHHHHHHhhC
Q 016668 331 VLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 331 ~~~~~~~~~i~~~~fp~-~qg~p~~~~iaala~Al~e~~~ 369 (385)
++.+.+.+...+. ...+..+...++...+|+....
T Consensus 262 ----~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~ 297 (410)
T PRK13392 262 ----DLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKT 297 (410)
T ss_pred ----HHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhc
Confidence 5666655433221 1222333456666677876543
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-16 Score=136.76 Aligned_cols=163 Identities=25% Similarity=0.266 Sum_probs=113.3
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
++++++++|+.+.. + + ++..+||.|+..++.++.++||+|++.++.|.++.. . .....|..+..++ .+
T Consensus 5 ~~~~l~~~~~~~~~-~-~-~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~-----~~~~~g~~~~~v~--~~ 72 (170)
T cd01494 5 LEEKLARLLQPGND-K-A-VFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW--V-----AAELAGAKPVPVP--VD 72 (170)
T ss_pred HHHHHHHHcCCCCC-c-E-EEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh--h-----HHHhcCCEEEEec--cC
Confidence 45678999964432 2 3 345588899999999999999999999987766531 1 2334565444444 43
Q ss_pred CCCC-CCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEE
Q 016668 233 ESTG-LVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVT 309 (385)
Q Consensus 233 ~~~~-~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~ 309 (385)
..+. ..|.+.+++.....+|+++++..++++ ...|+++|.++|+++|+++++|++|..+....+.......++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~ 152 (170)
T cd01494 73 DAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVT 152 (170)
T ss_pred CCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEE
Confidence 2222 233346655554457889988776554 4568899999999999999999999766543221111223799999
Q ss_pred ECCCccCccccEEEEEEe
Q 016668 310 TTTHKSLRGPRGGMIFFK 327 (385)
Q Consensus 310 ~S~hK~l~GprgG~I~~~ 327 (385)
.|+||+|.+|++|+++++
T Consensus 153 ~s~~K~~~~~~~G~l~~~ 170 (170)
T cd01494 153 FSLHKNLGGEGGGVVIVK 170 (170)
T ss_pred EEcccccCCCceEEEEeC
Confidence 999999988899999874
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-15 Score=151.32 Aligned_cols=237 Identities=17% Similarity=0.132 Sum_probs=146.6
Q ss_pred hcccCChHHHHHHHHHHHHh----hhccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 82 SLGEADPEVCEIITKEKERQ----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 82 ~l~~~dp~~~~~i~~e~~~~----~~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
++..+.++++..+.+..... ...++|-.++. .+++.+.+++.+.+.+....+|+. ..|.+ ++++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~aia~ 79 (405)
T PRK09148 6 RIRRLPPYVFEQVNRLKAAARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSA---SKGIP---GLRRAQAA 79 (405)
T ss_pred hhhcCCccHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCC---CCCCH---HHHHHHHH
Confidence 44555666565554433322 12345543332 346888888776654322234543 23544 67777777
Q ss_pred HHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC
Q 016668 156 RALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (385)
Q Consensus 156 ~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (385)
++.+.+|.+-+ +.-+|..++|+ +|+..++.++++|||+|++.+|.|.++.. .....|..+..++ ++.+
T Consensus 80 ~~~~~~g~~~~-~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~--------~~~~~g~~v~~v~--~~~~ 148 (405)
T PRK09148 80 YYARRFGVKLN-PDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAF--------GFIMAGGVIRSVP--AEPD 148 (405)
T ss_pred HHHHHhCCCCC-CCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHH--------HHHhcCCEEEEEe--CCCC
Confidence 88777786421 11146667776 59999999999999999999997765422 2245576554444 4433
Q ss_pred C-CCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCc-ccCC--CCC-
Q 016668 235 T-GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FKY- 304 (385)
Q Consensus 235 ~-~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p--~~g- 304 (385)
+ +..+++++.+... .++++|+++.|+|| ...+ +++|.++|+++|+++|+|+++ ..+.+.+. .++. +++
T Consensus 149 ~~~~~~l~~~~~~~~-~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y-~~~~~~~~~~~s~~~~~~~ 226 (405)
T PRK09148 149 EEFFPALERAVRHSI-PKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAY-SEIYFDGNPPPSVLQVPGA 226 (405)
T ss_pred CCCccCHHHHHhhcc-ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccc-hhhhcCCCCCCChhhCCCc
Confidence 2 3344444333222 36788888887776 3445 467889999999999999997 44444332 2222 222
Q ss_pred Cc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 305 CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 305 aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
.+ +++.|++|++ +|.|.|++++++ ++.+.+...
T Consensus 227 ~~~~i~~~SfSK~~~~pGlR~G~~v~~~------~~i~~l~~~ 263 (405)
T PRK09148 227 KDVTVEFTSMSKTFSMAGWRMGFAVGNE------RLIAALTRV 263 (405)
T ss_pred cCcEEEEeccccccCCcchheeeeeCCH------HHHHHHHHH
Confidence 23 5689999987 788999999877 566666543
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=152.22 Aligned_cols=214 Identities=17% Similarity=0.098 Sum_probs=143.0
Q ss_pred ccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHH
Q 016668 104 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPA 180 (385)
Q Consensus 104 ~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A 180 (385)
.++|-.+++ .+++.+.+++...+.+. ..+|+. ..|.+ ++++.+++++.+.+|.+.+ ..-+|.+++| +.|
T Consensus 22 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~---~~g~~---~lr~~ia~~~~~~~g~~~~-~~~~i~~t~G~~~a 93 (378)
T PRK07682 22 VISLGVGEPDFVTPWNVREASIRSLEQG-YTSYTA---NAGLL---ELRQEIAKYLKKRFAVSYD-PNDEIIVTVGASQA 93 (378)
T ss_pred eEEeCCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC---CCCcH---HHHHHHHHHHHHHhCCCCC-CCCcEEEeCChHHH
Confidence 356654444 34667788877665432 223443 12443 7888888888888887431 1013556665 569
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
+..++.++++|||+|++.+|.|..+.. .+...|..+. +++++. +++.+|++++++.+.+ ++|+|++..
T Consensus 94 l~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~--~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~ 162 (378)
T PRK07682 94 LDVAMRAIINPGDEVLIVEPSFVSYAP--------LVTLAGGVPV--PVATTLENEFKVQPAQIEAAITA-KTKAILLCS 162 (378)
T ss_pred HHHHHHHhCCCCCEEEEeCCCchhhHH--------HHHHcCCEEE--EeecCCccCCCCCHHHHHhhcCc-ccEEEEEEC
Confidence 999999999999999999987654321 2344565443 443442 2468999999998865 789888877
Q ss_pred CCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccC--CCCC---CcEEEECCCccC--ccccEEEEEEe
Q 016668 260 SAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFKY---CDVVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 260 s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~~g---aDiv~~S~hK~l--~GprgG~I~~~ 327 (385)
++||+ .. ++++|.++|+++|+++++|+++ .++...+...+ .+.+ -.+++.|++|+| +|.|.|+++++
T Consensus 163 p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~ 241 (378)
T PRK07682 163 PNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIY-AELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAP 241 (378)
T ss_pred CCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhh-hhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcC
Confidence 77773 33 4889999999999999999997 45554432111 1111 237899999997 58889999998
Q ss_pred CCCCchhHHHHHHhhc
Q 016668 328 KDPVLGVELESAINNA 343 (385)
Q Consensus 328 ~~~~~~~~~~~~i~~~ 343 (385)
+ ++.+++...
T Consensus 242 ~------~~i~~l~~~ 251 (378)
T PRK07682 242 V------YFSEAMLKI 251 (378)
T ss_pred H------HHHHHHHHH
Confidence 7 566666443
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=159.81 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=122.8
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
|+++++.||+ .++++.|.++ .+.+.||+.|+.+++.++++|||+|+++.+.|++.... . ...+...|
T Consensus 59 ~nPtv~~lE~----~la~leg~~~-----av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~--~--~~~l~~~G 125 (432)
T PRK06702 59 GNPTLAAFEQ----KLAELEGGVG-----AVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNL--F--GVSLRKLG 125 (432)
T ss_pred CCcHHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHH--H--HHHHHHCC
Confidence 6788888886 5888999987 36789999999999999999999999999877654221 0 01134556
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+.++ | ..+|++++++++++ ++|+|++..+.+| ...|+++|+++|+++|+++++|++.... ...
T Consensus 126 i~v~~v----d---~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP-----~~~ 192 (432)
T PRK06702 126 IDVTFF----N---PNLTADEIVALAND-KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATP-----YLC 192 (432)
T ss_pred CEEEEE----C---CCCCHHHHHHhCCc-CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCch-----hhC
Confidence 644333 2 24799999999976 7999998877776 4679999999999999999999997433 234
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEE
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFF 326 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~ 326 (385)
.|++ ||||++.|++|++.|+- ||.++.
T Consensus 193 ~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~ 223 (432)
T PRK06702 193 QAFEHGANIIVHSTTKYIDGHASSLGGIVID 223 (432)
T ss_pred ChhhcCCCEEEEccccccCCCcceeceEEEe
Confidence 6777 89999999999998865 365654
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-17 Score=170.33 Aligned_cols=204 Identities=19% Similarity=0.162 Sum_probs=141.8
Q ss_pred HHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecc
Q 016668 152 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (385)
Q Consensus 152 ~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~ 230 (385)
.+++.++++||++.. .+.++|| .+|.++++++++|||+||+.. ++|.|--. ..+.+.|+...++.-.
T Consensus 178 eAq~~AA~~fgAd~t-----yFlvNGTS~gn~a~i~a~~~~Gd~VLvdR---N~HKSv~h----gaLiLsGa~PVYl~P~ 245 (720)
T PRK13578 178 DAQKHAAKVFNADKT-----YFVLNGTSASNKVVTNALLTPGDLVLFDR---NNHKSNHH----GALIQAGATPVYLETA 245 (720)
T ss_pred HHHHHHHHHhCCCce-----EEEeCChhHHHHHHHHHhcCCCCEEEeec---ccHHHHHH----HHHHHcCCeEEEeecc
Confidence 467889999999984 3445666 599999999999999999876 46655110 0245777755544322
Q ss_pred ccCCCC---CCCHHH-----HHHHhhhc--------CC-cEEEEc-CCCCCCCCCHHHHHHH-HHHcCcEEEEecccccc
Q 016668 231 LDESTG---LVDYDM-----LEKTAILF--------RP-KLIIAG-ASAYPRDFDYPRMRQI-ADAVGALLMMDMAHISG 291 (385)
Q Consensus 231 ~~~~~~---~iD~d~-----le~~i~~~--------~p-klIi~~-~s~~~~~~dl~~I~~i-a~~~ga~livD~ah~~G 291 (385)
.+ ..| .|+.++ |++.++++ +| |++++. ++.+|...|+++|.++ ++.++ +|++|+||++.
T Consensus 246 ~n-~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah 323 (720)
T PRK13578 246 RN-PFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGY 323 (720)
T ss_pred cc-ccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhh
Confidence 22 222 356555 88888664 23 666554 5556899999999998 78888 99999999887
Q ss_pred ccccCc---c-cCCCC-CCc----EEEECCCccCccc-cEEEEEEeCCCCc---hhHHHHHHhhccCCCccCCChHHHHH
Q 016668 292 LVAASV---V-ADPFK-YCD----VVTTTTHKSLRGP-RGGMIFFKKDPVL---GVELESAINNAVFPGLQGGPHNHTIG 358 (385)
Q Consensus 292 li~~g~---~-~~p~~-gaD----iv~~S~hK~l~Gp-rgG~I~~~~~~~~---~~~~~~~i~~~~fp~~qg~p~~~~ia 358 (385)
+.+... + +..++ |+| +++.|+||+|++. ++.+|..+++.+. -+--.++++.+.......+|+...+|
T Consensus 324 ~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmA 403 (720)
T PRK13578 324 EQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFA 403 (720)
T ss_pred hccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHH
Confidence 765442 2 23345 899 9999999999987 5577777653110 00002566666544455689999999
Q ss_pred HHHHHHHHhhC
Q 016668 359 GLAVCLKHAQS 369 (385)
Q Consensus 359 ala~Al~e~~~ 369 (385)
++.+|.+.+..
T Consensus 404 SLDva~~~m~~ 414 (720)
T PRK13578 404 ALDVNAKMHEG 414 (720)
T ss_pred HHHHHHHHHHH
Confidence 99998887765
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=151.66 Aligned_cols=215 Identities=18% Similarity=0.148 Sum_probs=142.2
Q ss_pred hcccccc--CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC-CCCcceeecCCcH-
Q 016668 103 KSLELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGS- 178 (385)
Q Consensus 103 ~~l~Lia--sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~-~~~~~~V~~~sGs- 178 (385)
..++|-. ++..+++.+++++.+.+.. ...|+. ..|.+ ++++.+++++.+.+|.+. -++.-+|..++|+
T Consensus 29 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~--~~~Y~~---~~G~~---~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~ 100 (393)
T TIGR03538 29 PPIALSIGEPKHPTPAFVLEALRENLHG--LSTYPT---TKGLP---ELRQAIARWLERRFDLPTGVDPERHVLPVNGTR 100 (393)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHhhc--cCCCCC---CCCCH---HHHHHHHHHHHHhhCCcccCCCCceEEECCCcH
Confidence 3444442 3444688899998876542 223443 23444 677777788888777541 1111146666765
Q ss_pred HHHHHHHHHhccCCCE--EeecCCCCCccccCCccccccccccCcceEEEEeccccCCC-CCCCHHHHHHHhhhcCCcEE
Q 016668 179 PANFEVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLI 255 (385)
Q Consensus 179 ~A~~~a~~all~pGD~--Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~iD~d~le~~i~~~~pklI 255 (385)
+|+..++.++++|||. |++++|.+.++.. .+...|..+. ++++++++ +.+|++++++.+.+ ++|+|
T Consensus 101 ~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~--------~~~~~g~~~~--~v~~~~~~~~~~d~~~l~~~~~~-~~k~i 169 (393)
T TIGR03538 101 EALFAFAQAVINPGQAPLVVMPNPFYQIYEG--------AALLAGAEPY--FLNCTAENGFLPDFDAVPESVWR-RCQLL 169 (393)
T ss_pred HHHHHHHHHHcCCCCcceEEecCCCCcchHH--------HHHhcCCeEE--EeeccccCCCCCCHHHHHHHHhh-cceEE
Confidence 5999999999999996 8888886654321 2345666444 44455443 47899999988755 78999
Q ss_pred EEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCc--ccCCC----C-C---Cc--EEEECCCcc--C
Q 016668 256 IAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV--VADPF----K-Y---CD--VVTTTTHKS--L 316 (385)
Q Consensus 256 i~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~--~~~p~----~-g---aD--iv~~S~hK~--l 316 (385)
+++.++||+ ..+ +++|.++|+++|++||+|+++. .+...+. .++.+ . + .| +++.|++|. +
T Consensus 170 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~ 248 (393)
T TIGR03538 170 FVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYS-ELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNL 248 (393)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchh-hcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCC
Confidence 888888873 344 7888999999999999999973 4443321 11111 0 1 12 678999996 4
Q ss_pred ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 317 RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 317 ~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+|.|.|++++++ ++.+++...
T Consensus 249 ~GlRvG~~i~~~------~l~~~~~~~ 269 (393)
T TIGR03538 249 PGLRSGFVAGDA------EILKAFLRY 269 (393)
T ss_pred cccceEEEecCH------HHHHHHHHH
Confidence 899999999887 566666543
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-15 Score=152.72 Aligned_cols=197 Identities=18% Similarity=0.148 Sum_probs=132.9
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhcc
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILK 190 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~ 190 (385)
-.+|+.+.+++...+.+....+|+. ..|.+ ++++...+++.+.+|.+.+ + -+|..++|+. |+..++ .+++
T Consensus 47 ~~~p~~~~~a~~~~~~~~~~~~Y~~---~~G~~---~LReaia~~~~~~~g~~~~-~-~~I~it~G~~~al~~~~-~l~~ 117 (433)
T PRK06855 47 EKIPDWMKEIVAELVMDDKSYGYCP---TKGVL---ETREFLAELNNKRGGAQIT-P-DDIIFFNGLGDAIAKIY-GLLR 117 (433)
T ss_pred CCCCHHHHHHHHHHhhcCCCCCCCC---CCCCH---HHHHHHHHHHHhccCCCCC-H-hHEEEcCcHHHHHHHHH-HhcC
Confidence 4678888888877654322223433 23554 7777778888887776431 2 2566777764 887776 4899
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhh-cCCcEEEEcCCCCCC--CC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAIL-FRPKLIIAGASAYPR--DF 266 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~-~~pklIi~~~s~~~~--~~ 266 (385)
|||.|++.+|.|.++... .....|. +.++++++++ ++.+|+++|++.++. .++|+++++.++||+ ..
T Consensus 118 ~Gd~Vlv~~P~Y~~~~~~-------~~~~~g~--~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~ 188 (433)
T PRK06855 118 REARVIGPSPAYSTHSSA-------EAAHAGY--PPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVY 188 (433)
T ss_pred CCCeEEEeCCCCchHHHH-------HHHhcCC--eEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCC
Confidence 999999999977654210 1112343 4445556543 347999999999864 256888877788873 44
Q ss_pred C---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC-C---C-CcEEEECCCccC--ccccEEEEEEe
Q 016668 267 D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K---Y-CDVVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 267 d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~-~---g-aDiv~~S~hK~l--~GprgG~I~~~ 327 (385)
+ +++|.++|+++|++||+|+++ ..+.+.+..+.++ . . --|++.|++|++ +|+|.||++..
T Consensus 189 s~~~~~~l~~~a~~~~~~II~De~Y-~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p 258 (433)
T PRK06855 189 PKEILREIVDIAREYDLFIICDEIY-NNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVY 258 (433)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc-cccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEe
Confidence 4 677888899999999999996 5666544222122 1 1 127889999997 78999999984
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-15 Score=151.25 Aligned_cols=229 Identities=19% Similarity=0.200 Sum_probs=152.0
Q ss_pred cccCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 107 LIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 107 Liasen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G~-~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
...|++|+ +|.|++++...+. ++..+..++|...|. +...++| +++++++|.+. .+.++||+.||
T Consensus 49 ~~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~le----~~la~~~g~~~-----~~~~~SG~~An 118 (406)
T PRK13393 49 VWCSNDYLGMGQHPAVLAAMHEALD-TCGAGAGGTRNISGTNHYHVLLE----AELADLHGKEA-----ALLFTSGYVSN 118 (406)
T ss_pred EeecccccCCCCCHHHHHHHHHHHH-HcCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEeCCcHHHH
Confidence 35788886 8899999988764 565555555544443 3334444 57889999754 47789999999
Q ss_pred HHHHHHhcc--CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh---cCCcEEE
Q 016668 182 FEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLII 256 (385)
Q Consensus 182 ~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~---~~pklIi 256 (385)
..++.++.. +||.|+..+..|++.+. .+...|..+..++ ..|++++++.++. .++++|+
T Consensus 119 ~~ai~~l~~~~~g~~I~~~~~~H~s~~~--------~~~~~g~~~~~~~--------~~d~~~l~~~l~~~~~~~~~~v~ 182 (406)
T PRK13393 119 WAALSTLGSRLPGCVILSDELNHASMIE--------GIRHSRAEKRIFR--------HNDPADLERKLSDLDPHRPKLVA 182 (406)
T ss_pred HHHHHHhhcCCCCCEEEEccchhHHHHH--------HHHHcCCeEEEeC--------CCCHHHHHHHHHhccCCCCEEEE
Confidence 999998765 88888877666543321 2234454332222 2477888877753 2467888
Q ss_pred EcCCC--CCCCCCHHHHHHHHHHcCcEEEEecccccccccc-Cc-ccC--CC-CCCcEEEECCCccCccccEEEEEEeCC
Q 016668 257 AGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VAD--PF-KYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (385)
Q Consensus 257 ~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~-~~~--p~-~gaDiv~~S~hK~l~GprgG~I~~~~~ 329 (385)
++..+ .|...|+++|.++|+++|+++++|++|+.|+... |. ... .+ +..|+++.|++|.++ ..||++++++
T Consensus 183 ~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g-~~GG~~~~~~- 260 (406)
T PRK13393 183 FESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFG-VMGGYITGSA- 260 (406)
T ss_pred EcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhc-ccCceeeCCH-
Confidence 76554 4577899999999999999999999998787431 21 101 11 135888899999985 4578888776
Q ss_pred CCchhHHHHHHhhccCCCc-cCCChHHHHHHHHHHHHHhh
Q 016668 330 PVLGVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 330 ~~~~~~~~~~i~~~~fp~~-qg~p~~~~iaala~Al~e~~ 368 (385)
++.+.+.....+.. .++.++...++...+++.+.
T Consensus 261 -----~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~ 295 (406)
T PRK13393 261 -----ALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLK 295 (406)
T ss_pred -----HHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHh
Confidence 56666654433322 33455555666666776553
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=153.57 Aligned_cols=193 Identities=19% Similarity=0.177 Sum_probs=134.5
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC--------CCCCCCcceeecCCcH-HHHH
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--------LDENKWGVNVQPLSGS-PANF 182 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg--------~~~~~~~~~V~~~sGs-~A~~ 182 (385)
..+++.+.+++.+.+......+|+. ..|.+ ++++.+.+++.+.++ ++.+ +|..++|+ +|+.
T Consensus 49 ~~p~~~~~~a~~~~~~~~~~~~Y~~---~~G~~---~Lr~aia~~~~~~~~~~~~~~~~~~~~----~i~it~G~~~al~ 118 (412)
T PTZ00433 49 LLTPAIQTKALVEAVDSQECNGYPP---TVGSP---EAREAVATYWRNSFVHKESLKSTIKKD----NVVLCSGVSHAIL 118 (412)
T ss_pred CCCCHHHHHHHHHHhhcCCCCCCCC---CCCcH---HHHHHHHHHHHhhccccccccCCCChh----hEEEeCChHHHHH
Confidence 3678999999887665322234554 12443 677777777776654 4443 45566664 6999
Q ss_pred HHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
.++.++++|||+|++.+|.|..+.. .+...|..+..++ +++ +++.+|++++++.++. ++|+|+++.++
T Consensus 119 ~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~~~i~--~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~p~ 187 (412)
T PTZ00433 119 MALTALCDEGDNILVPAPGFPHYET--------VCKAYGIEMRFYN--CRPEKDWEADLDEIRRLVDD-RTKALIMTNPS 187 (412)
T ss_pred HHHHHhcCCCCEEEEccCCcccHHH--------HHHHcCCEEEEEe--cCccccCcCCHHHHHHHhcc-CceEEEEeCCC
Confidence 9999999999999999987654422 2345676555555 443 3458999999988865 78999888888
Q ss_pred CCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCc-ccCC--CC-CCc-EEEECCCccC--ccccEEEEEE
Q 016668 262 YPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FK-YCD-VVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 262 ~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p--~~-gaD-iv~~S~hK~l--~GprgG~I~~ 326 (385)
||+ .. ++++|.++|+++|++|++|+++ ..+.+.+. +++. +. ..+ +++.|++|+| +|.|.|++++
T Consensus 188 NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~ 263 (412)
T PTZ00433 188 NPCGSNFSRKHVEDIIRLCEELRLPLISDEIY-AGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLL 263 (412)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCeEEEeccc-cccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEE
Confidence 774 23 4788899999999999999997 46655432 1211 12 123 6789999986 7889999997
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=150.37 Aligned_cols=230 Identities=17% Similarity=0.131 Sum_probs=144.3
Q ss_pred ccCCCCC----cHHHHHHHhhHhhccC------CCCCCCCCCCCCcH-HHHHHHHHHHHHHHHHcCCCCCCCcceeecCC
Q 016668 108 IASENFT----SRAVMEAVGSCLTNKY------SEGLPGKRYYGGNE-YIDELETLCQKRALAAFNLDENKWGVNVQPLS 176 (385)
Q Consensus 108 iasen~~----s~~V~~al~s~l~~~y------~~g~p~~r~~~G~~-~~~~le~~~~~~la~lfg~~~~~~~~~V~~~s 176 (385)
.+|++|. ++.+.+++...+.... ..|..++|...|.. .+++ +++.+++++|.+. .+.++|
T Consensus 9 ~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~----~e~~la~~~~~~~-----~l~~~s 79 (370)
T PRK05937 9 FVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDD----LEHKIAHFHGAPE-----AFIVPS 79 (370)
T ss_pred eECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHH----HHHHHHHHhCCCe-----EEEECC
Confidence 3676765 6777777665554321 23455566555543 3333 4567999999975 367889
Q ss_pred cHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-----C
Q 016668 177 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----R 251 (385)
Q Consensus 177 Gs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~ 251 (385)
|+.||..+...+.++||.|+.....|++... .+..... ..+.+ ..+|++++++.++.. +
T Consensus 80 G~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~--------~~~~~~~--~~~~~------~~~d~~~l~~~l~~~~~~~~~ 143 (370)
T PRK05937 80 GYMANLGLCAHLSSVTDYVLWDEQVHISVVY--------SLSVISG--WHQSF------RHNDLDHLESLLESCRQRSFG 143 (370)
T ss_pred hHHHHHHHHHHhCCCCCEEEEEhhhhHHHHH--------HHHHcCC--ceEEe------cCCCHHHHHHHHHhhhccCCC
Confidence 9999987777777889988887766543321 1122211 12233 247899999988642 2
Q ss_pred CcEEEEcCCC--CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcc----cCCCCCCcEEEECCCccCccccEEEEE
Q 016668 252 PKLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV----ADPFKYCDVVTTTTHKSLRGPRGGMIF 325 (385)
Q Consensus 252 pklIi~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~----~~p~~gaDiv~~S~hK~l~GprgG~I~ 325 (385)
+++|++...+ .|...|+++|.++|+++|+++++|++|+.|....... ...+...++++.|++|.+ ||.|+.++
T Consensus 144 ~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~vl 222 (370)
T PRK05937 144 RIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAALL 222 (370)
T ss_pred cEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceEEE
Confidence 3455565443 4678899999999999999999999998885432110 011112346778999976 77887777
Q ss_pred EeCCCCchhHHHHHHhhccCCC-ccCCChHHHHHHHHHHHHHhhC
Q 016668 326 FKKDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 326 ~~~~~~~~~~~~~~i~~~~fp~-~qg~p~~~~iaala~Al~e~~~ 369 (385)
+.+ ++...+.....|. ..++.++..++++..+++.+..
T Consensus 223 ~~~------~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~ 261 (370)
T PRK05937 223 SSS------EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQ 261 (370)
T ss_pred cCH------HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHh
Confidence 765 4444433221122 2334566678888888876643
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=158.32 Aligned_cols=161 Identities=18% Similarity=0.109 Sum_probs=121.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccC
Q 016668 141 GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 220 (385)
Q Consensus 141 ~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~ 220 (385)
.|++..+.||+ +++.+.|.+. .+.++||+.|+.+++.++++|||+|+++++.|+++.... ...+...
T Consensus 61 ~gnPt~~~Le~----~la~le~~~~-----~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~----~~~l~~~ 127 (395)
T PRK05967 61 RGTPTTDALCK----AIDALEGSAG-----TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFC----DTMLKRL 127 (395)
T ss_pred CCChHHHHHHH----HHHHHhCCCC-----EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHH----HHHHHhc
Confidence 47888888876 5667777654 477889999999999999999999999998877643200 0123455
Q ss_pred cceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcc
Q 016668 221 SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 221 g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~ 298 (385)
|..+..+. .+ +.+.+++.+++ ++|+|+++.+++| ...|+++|+++|+++|+++++|+++..++ .
T Consensus 128 Gi~v~~vd--~~------~~e~l~~al~~-~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~-----~ 193 (395)
T PRK05967 128 GVEVEYYD--PE------IGAGIAKLMRP-NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPL-----Y 193 (395)
T ss_pred CeEEEEeC--CC------CHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCce-----e
Confidence 65544432 21 45779998865 7999999987776 56789999999999999999999985443 3
Q ss_pred cCCCC-CCcEEEECCCccCcccc---EEEEEEeC
Q 016668 299 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (385)
Q Consensus 299 ~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~ 328 (385)
..|++ |+|+++.|.+|++.|.. +|+++.++
T Consensus 194 ~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~ 227 (395)
T PRK05967 194 FRPLDFGVDISIHAATKYPSGHSDILLGTVSANE 227 (395)
T ss_pred cChhHcCCCEEEEecccccCCCCCeeEEEEEcCH
Confidence 46777 99999999999987753 57666554
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-15 Score=150.96 Aligned_cols=168 Identities=18% Similarity=0.271 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh---------ccCCCEEeecCCCCCccccCCcccccc
Q 016668 145 YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---------LKPHDRIMGLDLPHGGHLSHGFMTPKR 215 (385)
Q Consensus 145 ~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al---------l~pGD~Vl~~~~~~ggh~s~~~~~~~~ 215 (385)
...++|+ .+++++|.++ .+.++|||.|+..++.++ ++|||+|+++++.|.+...
T Consensus 64 ~~~~fe~----~lA~~~g~~~-----~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~-------- 126 (438)
T PRK15407 64 FNDAFEK----KLAEFLGVRY-----ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVN-------- 126 (438)
T ss_pred hHHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHH--------
Confidence 3456665 5888999875 366788999999998876 4899999999986654321
Q ss_pred ccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEecccccccccc
Q 016668 216 RVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA 295 (385)
Q Consensus 216 ~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~ 295 (385)
.+...|.. ++.++++++++.+|++.+++.+.. ++|+|++..+ ++...|+++|.++|+++|++||+|++|+.|....
T Consensus 127 ~v~~~G~~--pv~vdvd~~~~~id~~~le~~i~~-~tkaVi~~~~-~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~ 202 (438)
T PRK15407 127 PIIQNGLV--PVFVDVELPTYNIDASLLEAAVSP-KTKAIMIAHT-LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYD 202 (438)
T ss_pred HHHHcCCE--EEEEecCCCcCCcCHHHHHHHcCc-CCeEEEEeCC-CCChhhHHHHHHHHHHCCCEEEEECccchhhhcC
Confidence 33455654 445556656788999999999865 7898887643 5566799999999999999999999999887665
Q ss_pred CcccCCCCCCcEEEECCC--ccCccccEEEEEEeCCCCchhHHHHHH
Q 016668 296 SVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 296 g~~~~p~~gaDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~~~~~i 340 (385)
|.... ...|+.++|+| |.+....||+|+++++ ++.+++
T Consensus 203 g~~~G--~~gd~~~fSf~~~k~~~~geGG~l~t~d~-----~l~~~~ 242 (438)
T PRK15407 203 GRMTG--TFGDIATLSFYPAHHITMGEGGAVFTNDP-----LLKKII 242 (438)
T ss_pred Ceeee--ccCceEEEeCCCCCCccccCceEEEECCH-----HHHHHH
Confidence 53211 13598888888 6575556999999987 555544
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-15 Score=150.71 Aligned_cols=204 Identities=15% Similarity=0.059 Sum_probs=138.4
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKP 191 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~p 191 (385)
.+++.+.+++...+... ..+|+. ..|.+ ++++.+++++++.+|.+... .+|.+++|+ .|+..++.++++|
T Consensus 46 ~~~~~~~~~~~~~~~~~-~~~Y~~---~~G~~---~lr~~ia~~l~~~~g~~~~~--~~i~~t~G~~~al~~~~~~~~~~ 116 (402)
T PRK06107 46 DTPDHIKQAAVAAIERG-ETKYTL---VNGTP---ALRKAIIAKLERRNGLHYAD--NEITVGGGAKQAIFLALMATLEA 116 (402)
T ss_pred CCCHHHHHHHHHHHHcC-CCCCCC---CCCCH---HHHHHHHHHHHHhcCCCCCh--hhEEEeCCHHHHHHHHHHHhcCC
Confidence 34788889888776532 223443 23554 67777788888888985421 256677775 6999999999999
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC--
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF-- 266 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~-- 266 (385)
||+|++++|.+.+|.. .+...+.. .++++.+.+ ++.+|++++++.+.. ++++|++..++||+ ..
T Consensus 117 gd~vl~~~p~y~~y~~--------~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~ 185 (402)
T PRK06107 117 GDEVIIPAPYWVSYPD--------MVLANDGT--PVIVACPEEQGFKLTPEALEAAITP-RTRWLILNAPSNPTGAVYSR 185 (402)
T ss_pred CCEEEEecCCCcCHHH--------HHHHcCCE--EEEecCCcccCCCCCHHHHHhhcCc-CceEEEEECCCCCCCcCcCH
Confidence 9999999987655432 22334433 334444432 357999999998854 68888877777663 44
Q ss_pred -CHHHHHHHHHHc-CcEEEEeccccccccccCc-ccCCC---CC--Cc-EEEECCCccC--ccccEEEEEEeCCCCchhH
Q 016668 267 -DYPRMRQIADAV-GALLMMDMAHISGLVAASV-VADPF---KY--CD-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVE 335 (385)
Q Consensus 267 -dl~~I~~ia~~~-ga~livD~ah~~Gli~~g~-~~~p~---~g--aD-iv~~S~hK~l--~GprgG~I~~~~~~~~~~~ 335 (385)
++++|+++|+++ |+++|+|+++. .+.+.+. .++.. .+ .. +++.|++|+| +|.|.|++++++ +
T Consensus 186 ~~~~~l~~~a~~~~~~~iI~De~y~-~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~------~ 258 (402)
T PRK06107 186 AELRALADVLLRHPHVLVLTDDIYD-HIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPA------D 258 (402)
T ss_pred HHHHHHHHHHHHcCCeEEEEehhcc-ccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCH------H
Confidence 467888889998 99999999974 4444332 22211 11 22 6789999997 678999999887 5
Q ss_pred HHHHHhhc
Q 016668 336 LESAINNA 343 (385)
Q Consensus 336 ~~~~i~~~ 343 (385)
+.+.+...
T Consensus 259 ~~~~~~~~ 266 (402)
T PRK06107 259 LIAAINKL 266 (402)
T ss_pred HHHHHHHH
Confidence 66666554
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.6e-16 Score=154.42 Aligned_cols=206 Identities=18% Similarity=0.147 Sum_probs=139.7
Q ss_pred hccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-
Q 016668 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP- 179 (385)
Q Consensus 103 ~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~- 179 (385)
.-++|-..+|+ ++|.+++++... . ....||.. + ..++ ++.+++++|++.+ +|.+++|+.
T Consensus 53 ~~i~l~~n~~p~~~~~~v~~a~~~~-~--~~~~Yp~~----~---~~~l----r~~ia~~~~~~~~----~I~~t~Ga~~ 114 (380)
T PLN03026 53 DIVKLDANENPYGPPPEVLEALGNM-K--FPYVYPDP----E---SRRL----RAALAEDSGLESE----NILVGCGADE 114 (380)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHhh-H--hhccCCCC----C---HHHH----HHHHHHHhCcChh----hEEEcCCHHH
Confidence 33666655554 588899987642 1 11123321 1 1234 4567888998874 566777765
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
++..++.++++|||+|++++|.++.+.. .....|..+..++ .+ +++.+|++++++.++..++|+|+++.
T Consensus 115 ~i~~~~~~~~~~gd~Vlv~~P~y~~y~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~~~~~~~~v~l~~ 183 (380)
T PLN03026 115 LIDLLMRCVLDPGDKIIDCPPTFGMYVF--------DAAVNGAEVIKVP--RT-PDFSLDVPRIVEAVETHKPKLLFLTS 183 (380)
T ss_pred HHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCEEEEee--cC-CCCCcCHHHHHHHHhccCCcEEEEeC
Confidence 8888888999999999999987653321 2345676554444 44 34679999999988445799999888
Q ss_pred CCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCC--CcEEEECCCccC--ccccEEEEEEeCCCCch
Q 016668 260 SAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY--CDVVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (385)
Q Consensus 260 s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~g--aDiv~~S~hK~l--~GprgG~I~~~~~~~~~ 333 (385)
++|| ...+.+++.++++.. +++++|+++ ..+...+.....++. -.+++.|++|.+ +|.|.|++++++
T Consensus 184 P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY-~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~----- 256 (380)
T PLN03026 184 PNNPDGSIISDDDLLKILELP-ILVVLDEAY-IEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL----- 256 (380)
T ss_pred CCCCCCCCCCHHHHHHHHhcC-CEEEEECcc-hhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCH-----
Confidence 8876 577899999999865 899999997 344432211111222 237889999996 788999999987
Q ss_pred hHHHHHHhhccC
Q 016668 334 VELESAINNAVF 345 (385)
Q Consensus 334 ~~~~~~i~~~~f 345 (385)
++.+.+.....
T Consensus 257 -~~i~~l~~~~~ 267 (380)
T PLN03026 257 -SIIEYLWRAKQ 267 (380)
T ss_pred -HHHHHHHHhcC
Confidence 57777765443
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=150.86 Aligned_cols=212 Identities=17% Similarity=0.150 Sum_probs=146.1
Q ss_pred cccccCC--CCCcHHHHHHHhhHhhcc--CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-
Q 016668 105 LELIASE--NFTSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP- 179 (385)
Q Consensus 105 l~Liase--n~~s~~V~~al~s~l~~~--y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~- 179 (385)
++|-..+ -.+++.+++++...+... ...+||. .|. ..+++.+++++.+.+|.+-+ + .+|.+++|+.
T Consensus 29 i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~~----~g~---~~lr~aia~~~~~~~~~~~~-~-~~I~it~G~~~ 99 (368)
T PRK03317 29 VRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYPD----RDA---VALRADLAAYLTAQTGVGLT-V-ENVWAANGSNE 99 (368)
T ss_pred eEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCCC----Cch---HHHHHHHHHHhhhhccCCCC-h-hhEEECCCHHH
Confidence 4554444 346888999988765421 1234543 132 36777777788777765421 1 2577788865
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
++..++.++++|||.|++..|.|.++.. .....|. +.++++.+ +++.+|++++++.++..++|+|+++.
T Consensus 100 ~l~~~~~~~~~~gd~v~v~~P~y~~~~~--------~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~i~l~~ 168 (368)
T PRK03317 100 ILQQLLQAFGGPGRTALGFVPSYSMHPI--------IARGTHT--EWVEGPRA-ADFTLDVDAAVAAIAEHRPDVVFLTS 168 (368)
T ss_pred HHHHHHHHhcCCCCEEEEeCCChHHHHH--------HHHhcCC--eeEEcccC-CCCCCCHHHHHHHHhccCCCEEEEeC
Confidence 9999999999999999999987755422 2234444 44454443 34679999999998756789988888
Q ss_pred CCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----CCc-EEEECCCccC--ccccEEEEEEeCCC
Q 016668 260 SAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 260 s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~----gaD-iv~~S~hK~l--~GprgG~I~~~~~~ 330 (385)
++|| ...+.+++.++++.++++||+|++|. ++...+. +..+. .-+ +++.|++|++ +|.|.|++++++
T Consensus 169 p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~-~~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~-- 244 (368)
T PRK03317 169 PNNPTGTALPLDDVEAILDAAPGIVVVDEAYA-EFRRSGT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAP-- 244 (368)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCceEEEeCCch-hhcccCC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCH--
Confidence 8775 67889999999999999999999984 4433332 12121 224 6788999987 588889999877
Q ss_pred CchhHHHHHHhhcc
Q 016668 331 VLGVELESAINNAV 344 (385)
Q Consensus 331 ~~~~~~~~~i~~~~ 344 (385)
++.+.+....
T Consensus 245 ----~~~~~l~~~~ 254 (368)
T PRK03317 245 ----AVVDALRLVR 254 (368)
T ss_pred ----HHHHHHHhcC
Confidence 6777776543
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-15 Score=149.59 Aligned_cols=196 Identities=13% Similarity=0.037 Sum_probs=134.4
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhcc
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILK 190 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~ 190 (385)
..+++.+++++...+......+|+. ..|.+ ++++..++++.+.+|.+.+ + -+|..++|+ +|+..++.++++
T Consensus 48 ~~~p~~~~~a~~~~~~~~~~~~Y~~---~~G~~---~lr~aia~~~~~~~g~~~~-~-~~I~it~G~~~al~~~~~~l~~ 119 (409)
T PLN00143 48 FRTTNIAEDAIVEAVRSAKFNSYAP---TGGIL---PARRAIADYLSNDLPYQLS-P-DDVYLTLGCKHAAEIIIKVLAR 119 (409)
T ss_pred CCCCHHHHHHHHHHHhCcCCCCCCC---CCCCH---HHHHHHHHHHHhhcCCCCC-H-hhEEEecChHHHHHHHHHHHcC
Confidence 5778999999887665432233432 13544 6777777777777664321 1 245666665 599999999999
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d 267 (385)
|||.|++.+|.|.++.. .+...|..+..++ +++ +++.+|+++++++++. +++++++..|+|| ...+
T Consensus 120 ~gd~v~v~~P~y~~~~~--------~~~~~g~~~~~~~--~~~~~~~~~d~~~l~~~~~~-~~~~~~~~nP~NPTG~~~s 188 (409)
T PLN00143 120 PEANILLPRPGFPDVET--------YAIFHHLEIRHFD--LLPEKGWEVDLDAVEAIADE-NTIAMVIINPGNPCGSVYS 188 (409)
T ss_pred CCCEEEEcCCCCcCHHH--------HHHHcCCEEEEEe--ccCCCCCcCCHHHHHHhccc-CCEEEEEECCCCCCCCccC
Confidence 99999999997755422 2345565444444 432 3457999999988754 6777777777876 3444
Q ss_pred ---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CCCc--EEEECCCccC--ccccEEEEEEe
Q 016668 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCD--VVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 268 ---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~gaD--iv~~S~hK~l--~GprgG~I~~~ 327 (385)
+++|.++|+++++++|+|+++ ..+.+.+....++ +..+ +++.|++|++ +|+|.|++++.
T Consensus 189 ~~~~~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~ 257 (409)
T PLN00143 189 YEHLNKIAETARKLGILVIADEVY-GHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTC 257 (409)
T ss_pred HHHHHHHHHHHHHcCCeEEEEccc-cccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEee
Confidence 678889999999999999996 5666544321222 2222 6789999994 88999999984
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-15 Score=148.55 Aligned_cols=235 Identities=14% Similarity=0.090 Sum_probs=150.6
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccccCC--CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Liase--n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
.+++++.+..+..+..........++|-.++ ...++.+.+++...+.+.. .+|+. ..|.+ ++++..++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~-~~Y~~---~~g~~---~lr~~ia~~l~ 79 (387)
T PRK07683 7 PRVKDIQISGIRQFSNMVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITENY-TSYTH---NAGLL---ELRKAACNFVK 79 (387)
T ss_pred HHHHhCCccHHHHHHHHHHhcCCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCCH---HHHHHHHHHHH
Confidence 3444444444443333322112334554332 2346788898888776432 23432 12443 78877777777
Q ss_pred HHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCC
Q 016668 159 AAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL 237 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ 237 (385)
+.+|...+ ...+|..++| +.|+..++.+++++||+|++++|.+.++.. .+...|..+ ++++.++++..
T Consensus 80 ~~~g~~~~-~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~~--~~~~~~~~~~~ 148 (387)
T PRK07683 80 DKYDLHYS-PESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEP--------IIRLCGAKP--VFIDTRSTGFR 148 (387)
T ss_pred HHhCCCCC-CCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHH--------HHHHcCCEE--EEeecCcccCC
Confidence 77676321 1113555555 569999999999999999999986654321 234566644 45556545567
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-C-----Cc
Q 016668 238 VDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-Y-----CD 306 (385)
Q Consensus 238 iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-g-----aD 306 (385)
+|.+++++.++. ++|+|++..++||+ .. ++++|.++|+++|+++++|+++. .+.+.+... ++. . -.
T Consensus 149 ~~~~~l~~~~~~-~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~-~~~~~~~~~~~v 225 (387)
T PRK07683 149 LTAEALENAITE-KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYS-ELVYEQPHT-SIAHFPEMREKT 225 (387)
T ss_pred CCHHHHHHhcCc-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccc-cceeCCCcC-ChhhccCCcCCe
Confidence 899999998864 78999888777763 33 48889999999999999999974 444333221 221 1 23
Q ss_pred EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 307 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+++.|++|.+ +|.|.|++++++ ++.+++..
T Consensus 226 i~~~s~SK~~~~pGlRiG~i~~~~------~l~~~~~~ 257 (387)
T PRK07683 226 IVINGLSKSHSMTGWRIGFLFAPS------YLAKHILK 257 (387)
T ss_pred EEEeeccccccCccceeEEEEcCH------HHHHHHHH
Confidence 7899999997 688999999987 56665543
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=154.68 Aligned_cols=220 Identities=14% Similarity=0.120 Sum_probs=142.8
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G-~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
.+|.+.+++...+. +|..|+.+.|.+.| ++...++ ++++++++|.+. .|.+++|..++..++.+++++|
T Consensus 124 ~~~~i~ea~~~al~-~~G~g~~g~r~~yg~~~~~~~L----ee~La~~~~~~~-----~i~~s~G~~a~~sai~a~~~~g 193 (481)
T PLN02822 124 GNEKIKESCTSALE-KYGVGSCGPRGFYGTIDVHLDC----ETKIAKFLGTPD-----SILYSYGLSTIFSVIPAFCKKG 193 (481)
T ss_pred CCHHHHHHHHHHHH-HhCCCCcccCccccCHHHHHHH----HHHHHHHhCCCC-----EEEECCHHHHHHHHHHHhCCCC
Confidence 58999999987764 56667777665434 3433344 457899999765 4667788778999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh--------cCC-cEEEEcCC--C
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--------FRP-KLIIAGAS--A 261 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~--------~~p-klIi~~~s--~ 261 (385)
|.|++....| .+.. ..+.+.+..+. .++.+ |.++++..+++ .++ ++|++++. +
T Consensus 194 d~Ii~d~~~H---~s~~-----~~~~ls~~~~~--~~~~n------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~ 257 (481)
T PLN02822 194 DIIVADEGVH---WGIQ-----NGLYLSRSTIV--YFKHN------DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQN 257 (481)
T ss_pred CEEEEeCCcc---HHHH-----HHHHHcCCeEE--EECCC------CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCC
Confidence 9999765433 2211 13345555433 33332 44444444421 124 67887654 3
Q ss_pred CCCCCCHHHHHHHHHHcCcEEEEecccccccccc-Cc----ccCC-CCCCcEEEECCCccCccccEEEEEEeCCCCchhH
Q 016668 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV----VADP-FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVE 335 (385)
Q Consensus 262 ~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~----~~~p-~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~ 335 (385)
.|...|+++|+++|++||++|++|++|..|.... |. +... .+..|++++|++|+| |..||++++++ +
T Consensus 258 ~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKal-g~~GG~i~g~~------~ 330 (481)
T PLN02822 258 SGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHAL-ATEGGFCTGSA------R 330 (481)
T ss_pred CCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhh-hhCCeEEEcCH------H
Confidence 5678899999999999999999999998775431 21 1111 125689999999998 56779999887 5
Q ss_pred HHHHHhhccCCCccCC--ChHHHHHHHHHHHHHh
Q 016668 336 LESAINNAVFPGLQGG--PHNHTIGGLAVCLKHA 367 (385)
Q Consensus 336 ~~~~i~~~~fp~~qg~--p~~~~iaala~Al~e~ 367 (385)
+.+.+.........++ |.....|++ .||+.+
T Consensus 331 ii~~~~~~~~~~~fsa~lPp~~~~Aa~-~aL~~l 363 (481)
T PLN02822 331 VVDHQRLSSSGYVFSASLPPYLASAAI-TAIDVL 363 (481)
T ss_pred HHHHHHhcCCceeeccccCHHHHHHHH-HHHHHH
Confidence 6666654333334443 233344443 367554
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-16 Score=155.93 Aligned_cols=176 Identities=24% Similarity=0.322 Sum_probs=127.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcc
Q 016668 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (385)
Q Consensus 132 ~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (385)
.+|-+.|+ |+++.+.+|+ +++++.|.+. .+.+.||+.|+.+++.+++++||+|++.+..|++-.. ..
T Consensus 45 ~~~~Y~R~--gnPt~~~le~----~la~Le~g~~-----a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~--~~ 111 (386)
T PF01053_consen 45 KGYIYSRY--GNPTVRALEQ----RLAALEGGED-----ALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYR--LL 111 (386)
T ss_dssp SSCSBTTT--C-HHHHHHHH----HHHHHHT-SE-----EEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHH--HH
T ss_pred CCcceecc--ccccHHHHHH----HHHHhhcccc-----eeeccchHHHHHHHHHhhcccCCceEecCCccCcchh--hh
Confidence 45666665 8998888887 5788999876 3667899999999999999999999999877765322 10
Q ss_pred ccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcC-cEEEEeccc
Q 016668 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVG-ALLMMDMAH 288 (385)
Q Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~g-a~livD~ah 288 (385)
. ......|..+ ..+ | .-|++++++.+++ ++++|++..+.|| ...|+++|+++|+++| +++++|++.
T Consensus 112 ~--~~l~~~gv~v--~~~--d----~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 112 E--ELLPRFGVEV--TFV--D----PTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp H--HCHHHTTSEE--EEE--S----TTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred h--hhhcccCcEE--EEe--C----chhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence 0 1123345543 332 2 2489999999976 7999999998887 4679999999999999 999999997
Q ss_pred cccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeC-CCCchhHHHHHHh
Q 016668 289 ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK-DPVLGVELESAIN 341 (385)
Q Consensus 289 ~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~-~~~~~~~~~~~i~ 341 (385)
+.++ ...|++ |+|+++.|..|.+.|.. +|.|++++ . ++.+++.
T Consensus 181 atp~-----~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~-----~~~~~l~ 228 (386)
T PF01053_consen 181 ATPY-----NQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSS-----ELYDRLR 228 (386)
T ss_dssp THTT-----TC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHH-----HHHHHHH
T ss_pred ccee-----eeccCcCCceEEEeeccccccCCcceeeEEEEECchh-----hhhhhhc
Confidence 6543 346788 89999999999998876 78888876 3 5555554
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=147.53 Aligned_cols=191 Identities=19% Similarity=0.140 Sum_probs=124.2
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc-C
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-P 191 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~-p 191 (385)
++++.+++++.....+ . ...+| .+..+++|+ .+++++|.+. .+.+++|+.++.+++.++++ |
T Consensus 17 ~~~~~~~~a~~~~~~~-----~-~~~~~--~~~~~~l~~----~la~~~~~~~-----~~~~~~Gs~a~~~~l~~~~~~~ 79 (353)
T PLN02721 17 KPTDAMRAAMANAEVD-----D-DVLGY--DPTALRLEE----EMAKIFGKEA-----ALFVPSGTMGNLISVLVHCDVR 79 (353)
T ss_pred CCCHHHHHHHHhccCC-----C-cccCC--CHHHHHHHH----HHHHHhCCce-----eEEecCccHHHHHHHHHHccCC
Confidence 4678888887642011 1 11122 233455554 5788999875 35677899998888888887 9
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh------cCCcEEEEcC-CCCC-
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------FRPKLIIAGA-SAYP- 263 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~------~~pklIi~~~-s~~~- 263 (385)
||+|++.++.|-+....+ ......|..+.. ++.+ +++.+|+|++++.+++ .++|+|+++. ++++
T Consensus 80 gd~Vl~~~~~~~~~~~~~-----~~~~~~g~~~~~--v~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~ 151 (353)
T PLN02721 80 GSEVILGDNSHIHLYENG-----GISTLGGVHPRT--VKNN-EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCG 151 (353)
T ss_pred CCeEEEcCccceehhccc-----chhhhcCceeEe--cCCC-cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccC
Confidence 999999987542111000 012345654443 3344 3567999999999863 2688888755 3443
Q ss_pred -CCCC---HHHHHHHHHHcCcEEEEeccccccccc-cCcccCCC-CCCcEEEECCCccCccccEEEEEEeC
Q 016668 264 -RDFD---YPRMRQIADAVGALLMMDMAHISGLVA-ASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKK 328 (385)
Q Consensus 264 -~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~-~g~~~~p~-~gaDiv~~S~hK~l~GprgG~I~~~~ 328 (385)
...| +++|.++|+++|+++++|++|..+... .+..+..+ .++|.++.|+||+|++|.|++++.++
T Consensus 152 G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~ 222 (353)
T PLN02721 152 GRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSK 222 (353)
T ss_pred CccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCH
Confidence 3444 789999999999999999998644211 12212222 27888888999999888777666665
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-16 Score=152.96 Aligned_cols=240 Identities=14% Similarity=0.107 Sum_probs=156.1
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
+.++|....+|+.|++++...+.+..+.|.... ..+...++.+.++ .+++.++++||++.+ +.+.+...||+.|+.+
T Consensus 5 ~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~-~~~~~l~~l~~~~~~-~~v~~~~gsgt~~~Ea 82 (360)
T PRK05355 5 YNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAE-EAEADLRELLNIPDN-YKVLFLQGGASLQFAM 82 (360)
T ss_pred eeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCC-cEEEEEcCCchHHHHH
Confidence 457799999999999999877643211111100 1122344545555 478999999998432 2255555678889999
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHH-HhhhcCCcEEEEcC--C
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-TAILFRPKLIIAGA--S 260 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~-~i~~~~pklIi~~~--s 260 (385)
++..++.+||++++.. .|.++|.+. +.+...|.. ..+. .++..+..+..++++ .+++ ++++|.+.. +
T Consensus 83 ~~~nl~~~g~~~l~i~---~G~fg~r~~---~~a~~~g~~-~~~~--~~~~~g~~~~~~~~~~~l~~-~~~~V~~th~eT 152 (360)
T PRK05355 83 VPMNLLGGGKKADYVD---TGSWSKKAI---KEAKKYGEV-NVAA--SSEDDGFTYIPPLDEWQLSD-DAAYVHYTSNET 152 (360)
T ss_pred HHHhcCCCCCeEEEEE---CCHHHHHHH---HHHHHhCCc-eEEe--cccccCCCCCCChhhccCCC-CCCEEEEccCCC
Confidence 9999999999998875 355555542 233445642 3333 222234455445544 5544 688887643 4
Q ss_pred CCCCCC-CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 261 AYPRDF-DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 261 ~~~~~~-dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
++|... |+++| +|+++++|+++++|.. +-+++..|++++|.||+| ||.| |+++.+++ +.+
T Consensus 153 stGv~~~~i~~i------~g~l~vVDavss~g~~-----~idv~~~d~~~~ssqK~l-gP~Glg~l~~s~~------~l~ 214 (360)
T PRK05355 153 IDGTEFHELPDT------GDVPLVADMSSDILSR-----PIDVSKFGLIYAGAQKNI-GPAGLTIVIVRED------LLG 214 (360)
T ss_pred cceEecCccccc------CCCcEEEEcCccccCc-----cCCHHHccEEEEeccccc-cCCceEEEEECHH------HHh
Confidence 456665 66665 8999999999987743 233335679999999987 6998 88888774 222
Q ss_pred HHhh-----------ccCCCccCCChHHHHHHHHHHHHHhhCc-hHHH
Q 016668 339 AINN-----------AVFPGLQGGPHNHTIGGLAVCLKHAQSP-EFKV 374 (385)
Q Consensus 339 ~i~~-----------~~fp~~qg~p~~~~iaala~Al~e~~~~-~~~~ 374 (385)
+++. .......++|+.+.+.|+..||+.+.++ ++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~ 262 (360)
T PRK05355 215 RALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAA 262 (360)
T ss_pred hcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHH
Confidence 2211 1111123689999999999999999877 5643
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-16 Score=157.56 Aligned_cols=166 Identities=22% Similarity=0.206 Sum_probs=121.6
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccc
Q 016668 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (385)
Q Consensus 134 ~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (385)
|.+.|+ +++..++||+ .+++++|.+. .+.+.||+.|+..++.++++|||+|++.++.|++... ...
T Consensus 50 ~~y~r~--~~pt~~~Le~----~lA~l~g~~~-----~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~--~~~- 115 (425)
T PRK06084 50 NIYTRI--MNPTNDVLEQ----RVAALEGGVG-----ALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYN--LLA- 115 (425)
T ss_pred ccccCC--CCchHHHHHH----HHHHHhCCCc-----eeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHH--HHH-
Confidence 444443 5666667765 5888999765 3668899999999999999999999999887765321 100
Q ss_pred ccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccccc
Q 016668 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~G 291 (385)
..+...|. ++..+ + ..|++++++.+++ ++|+|+++.+++| ...|+++|.++|+++|+++++|++|..+
T Consensus 116 -~~l~~~gi--~v~~~--d----~~d~e~le~ai~~-~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~ 185 (425)
T PRK06084 116 -HTLPRIGI--ETRFA--A----HDDIAALEALIDE-RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATP 185 (425)
T ss_pred -Hhccccee--EEEEE--C----CCCHHHHHHHhcc-CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 01122333 32232 2 2489999999865 7899999877665 5789999999999999999999999765
Q ss_pred ccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeC
Q 016668 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (385)
Q Consensus 292 li~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~ 328 (385)
+. ..|++ ++|++++|+||++.|+. ||+++.++
T Consensus 186 ~~-----~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~ 221 (425)
T PRK06084 186 VL-----CRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSG 221 (425)
T ss_pred cc-----CChhhcCCCEEEECchhcccccccceeEEEEeCC
Confidence 43 34566 89999999999998763 57676543
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=152.15 Aligned_cols=175 Identities=25% Similarity=0.300 Sum_probs=132.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|.+.|+ ||++.+.+|+ .++++-|.+. .+.+.||+.|+..++.+++++||+|+..+..||+... ...
T Consensus 54 ~~~Y~R~--~nPT~~~lE~----~~a~LEg~~~-----~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~--~~~ 120 (396)
T COG0626 54 GYDYSRT--GNPTRDALEE----ALAELEGGED-----AFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYR--LFE 120 (396)
T ss_pred CcccccC--CCccHHHHHH----HHHHhhCCCc-----EEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHH--HHH
Confidence 4556554 7898999887 4778888887 3678999999999999999999999999887876432 111
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
......|. ++..+ + .-|.+++++.+.+.++|+|++..|.|| ...|+++|+++|+++|+++++|++.+.
T Consensus 121 --~~l~~~gi--~~~~~--d----~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat 190 (396)
T COG0626 121 --KILQKFGV--EVTFV--D----PGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT 190 (396)
T ss_pred --HHHHhcCe--EEEEE--C----CCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc
Confidence 12233454 33332 2 124456666665447999999999888 578999999999999999999999765
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHH
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i 340 (385)
+ .++.|++ |+||++.|..|.+.|.. +|+++++++ ++.+.+
T Consensus 191 P-----~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~-----~~~~~~ 234 (396)
T COG0626 191 P-----VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNE-----ELYELL 234 (396)
T ss_pred c-----cccChhhcCCCEEEEeccccccCCcceeeeEEecChH-----HHHHHH
Confidence 4 3467888 89999999999998874 587777776 566655
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-16 Score=157.03 Aligned_cols=160 Identities=22% Similarity=0.189 Sum_probs=120.4
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+.||+ .++++.|.++ .+.+.||+.|+..++.++++|||+|++.++.|++...- + ...+...|
T Consensus 62 ~~p~~~~Le~----~lA~leg~~~-----al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~-~---~~~~~~~G 128 (431)
T PRK08248 62 MNPTTDVFEK----RIAALEGGIG-----ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNL-F---AHTLPKLG 128 (431)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHH-H---HHHHHhCC
Confidence 5676777776 5888999876 47789999999999999999999999998877653210 0 01223456
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
.. +..++. .|++++++.+++ ++|+|++..+++| ...|+++|.++|+++|+++++|+++..+. ..
T Consensus 129 v~--v~~vd~------~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~-----~~ 194 (431)
T PRK08248 129 IT--VKFVDP------SDPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPY-----LL 194 (431)
T ss_pred EE--EEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccc-----cC
Confidence 54 444322 489999999865 7899988776665 67899999999999999999999986443 23
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeC
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~ 328 (385)
.|++ ++|+++.|+||++.|+. ||+++.+.
T Consensus 195 ~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~ 227 (431)
T PRK08248 195 RPIEHGADIVVHSATKFIGGHGTSIGGVIVDSG 227 (431)
T ss_pred ChhHcCCCEEEEcCccccCCCCCceEEEEEeCC
Confidence 4566 89999999999998763 46666544
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=145.78 Aligned_cols=204 Identities=19% Similarity=0.157 Sum_probs=134.0
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pG 192 (385)
+++.+.+++...+.+....+|+. ..|.+ ++++..++++.+.+|..-+ ...++..++|+ .++..++.++++||
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~lr~aia~~~~~~~g~~~~-~~~~i~~t~G~~~~l~~~~~~~~~~g 115 (395)
T PRK08175 43 TPPHIVEKLCEVAQRPDTHGYST---SRGIP---RLRRAISRWYQDRYDVDID-PESEAIVTIGSKEGLAHLMLATLDHG 115 (395)
T ss_pred CCHHHHHHHHHHHhCCCcCCCCC---CCCCH---HHHHHHHHHHHHHhCCCCC-CCCcEEEccCcHHHHHHHHHHhCCCC
Confidence 45667777766554332233443 23554 7777777888877776421 11145567776 58888888999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh--cCCcEEEEcCCCCC--CCCCH
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYP--RDFDY 268 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~s~~~--~~~dl 268 (385)
|+|++.+|.|..+.. .....|..+. +++++++ ..+.+++++.++. .++|+|+++.++|| ...+.
T Consensus 116 d~Vlv~~P~y~~~~~--------~~~~~g~~~~--~v~~~~~--~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~ 183 (395)
T PRK08175 116 DTVLVPNPSYPIHIY--------GAVIAGAQVR--SVPLVEG--VDFFNELERAIRESYPKPKMMILGFPSNPTAQCVEL 183 (395)
T ss_pred CEEEEcCCCCcchHH--------HHHHcCCeEE--EEecccC--CCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCH
Confidence 999999987654321 2235565444 4445432 3357888888764 26789888877766 44555
Q ss_pred ---HHHHHHHHHcCcEEEEeccccccccccCcc-cCC--CCC-Cc--EEEECCCccC--ccccEEEEEEeCCCCchhHHH
Q 016668 269 ---PRMRQIADAVGALLMMDMAHISGLVAASVV-ADP--FKY-CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELE 337 (385)
Q Consensus 269 ---~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~p--~~g-aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~ 337 (385)
++|.++|+++|+++|+|+++ ..+...+.. ++. +++ .| +++.|++|+| +|.|.|+++.++ ++.
T Consensus 184 ~~~~~i~~~a~~~~i~ii~De~y-~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~------~l~ 256 (395)
T PRK08175 184 EFFEKVVALAKRYDVLVVHDLAY-ADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNP------ELV 256 (395)
T ss_pred HHHHHHHHHHHHcCcEEEEecch-HhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCH------HHH
Confidence 78899999999999999997 345443322 221 122 34 5689999997 678899999876 566
Q ss_pred HHHhhc
Q 016668 338 SAINNA 343 (385)
Q Consensus 338 ~~i~~~ 343 (385)
+++.+.
T Consensus 257 ~~~~~~ 262 (395)
T PRK08175 257 SALARI 262 (395)
T ss_pred HHHHHH
Confidence 666543
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-15 Score=147.46 Aligned_cols=194 Identities=16% Similarity=0.101 Sum_probs=129.8
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceeecCCc-HHHHHHHHHHh
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG-SPANFEVYTAI 188 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg--~~~~~~~~~V~~~sG-s~A~~~a~~al 188 (385)
..+++.+++++...+......+|.. ..|.+ ++++.+++++.+. | ++.+ +|..++| ++|+..++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~---~lr~aia~~~~~~-~~~~~~~----~i~~t~G~~~al~~~~~~l 115 (401)
T TIGR01264 47 LPTDPEVMQAMKDSLDSGKYNGYAP---TVGAL---SAREAIASYYHNP-DGPIEAD----DVVLCSGCSHAIEMCIAAL 115 (401)
T ss_pred CCCCHHHHHHHHHHHhccCCCCCCC---CCCCH---HHHHHHHHHHhhc-CCCCCHH----HEEECcChHHHHHHHHHHh
Confidence 4578899999887665432223422 12443 5665555544432 2 3332 3555555 56999999999
Q ss_pred ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--C
Q 016668 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--D 265 (385)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~ 265 (385)
++|||+|++.+|.+..+. ..+...|..+..++ ++.+ ++.+|++.+++.++. ++++|+++.++||+ .
T Consensus 116 ~~~gd~v~i~~P~y~~~~--------~~~~~~g~~v~~~~--~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~ 184 (401)
T TIGR01264 116 ANAGQNILVPRPGFPLYE--------TLAESMGIEVKLYN--LLPDKSWEIDLKQLESLIDE-KTAALIVNNPSNPCGSV 184 (401)
T ss_pred CCCCCEEEEeCCCChhHH--------HHHHHcCCEEEEee--cCCccCCCCCHHHHHHHhcc-CceEEEEcCCCCCCCCC
Confidence 999999999998664432 13345666544444 4433 468999999998864 67999888888774 3
Q ss_pred C---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CC-Cc-EEEECCCcc--CccccEEEEEEeC
Q 016668 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY-CD-VVTTTTHKS--LRGPRGGMIFFKK 328 (385)
Q Consensus 266 ~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~g-aD-iv~~S~hK~--l~GprgG~I~~~~ 328 (385)
. ++++|.++|+++|+++++|+++ .++...+....++ .. .. |++.|++|+ ++|.|.|++++.+
T Consensus 185 ~~~~~~~~l~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~ 256 (401)
T TIGR01264 185 FSRQHLEEILAVAERQCLPIIADEIY-GDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHD 256 (401)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEhhh-hhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecC
Confidence 3 4888999999999999999996 5665444211122 11 22 678999997 4889999999875
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=145.28 Aligned_cols=198 Identities=17% Similarity=0.065 Sum_probs=128.9
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCC-cHHHHHHHHHHhc
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYTAIL 189 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~s-Gs~A~~~a~~all 189 (385)
+-++++.+++++...+......+|+. ..|.+ ++++.+++++...+|.+.+ . -+|.+++ +++|+..++.+++
T Consensus 46 ~~~~~~~~~~~~~~~l~~~~~~~Y~~---~~g~~---~lr~~ia~~l~~~~~~~~~-~-~~ii~t~G~t~al~~~~~~l~ 117 (403)
T TIGR01265 46 NLRTDPEAEEAVKDALRSGKFNGYAP---SVGAL---AAREAVAEYLSSDLPGKLT-A-DDVVLTSGCSQAIEICIEALA 117 (403)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCH---HHHHHHHHHHHhhcCCCCC-H-HHEEEecChHHHHHHHHHHhC
Confidence 45678999999987765443334432 22433 4555444444433333211 1 1344555 4679999999999
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCC
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF 266 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~ 266 (385)
++||+|++.+|.+.++.. .....|..+..++ +++ +++.+|++++++.+.. +++++++..++|| ...
T Consensus 118 ~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~~~--~~~~~~~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~ 186 (403)
T TIGR01265 118 NPGANILVPRPGFPLYDT--------RAAFSGLEVRLYD--LLPEKDWEIDLDGLEALADE-KTVAIVVINPSNPCGSVF 186 (403)
T ss_pred CCCCEEEEeCCCchhHHH--------HHHHcCCEEEEec--CCcccCCccCHHHHHHHhCc-CccEEEEecCCCCCCCCC
Confidence 999999999987643311 2345565544444 433 3457999999998854 6788888777766 344
Q ss_pred C---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---C-CCc-EEEECCCccC--ccccEEEEEEeC
Q 016668 267 D---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCD-VVTTTTHKSL--RGPRGGMIFFKK 328 (385)
Q Consensus 267 d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~-gaD-iv~~S~hK~l--~GprgG~I~~~~ 328 (385)
+ +++|.++|+++|+++++|+++ ..+...+....++ . ... +++.|++|++ +|.|.|++++.+
T Consensus 187 ~~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~ 257 (403)
T TIGR01265 187 SRDHLQKIAEVARKLGIPIIADEIY-GHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHD 257 (403)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEccc-cccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeC
Confidence 4 789999999999999999996 4555443211122 1 223 5789999984 788999999854
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.9e-15 Score=150.81 Aligned_cols=206 Identities=15% Similarity=0.096 Sum_probs=138.3
Q ss_pred CcHHHHHHHhhHhhccC--CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhc-
Q 016668 114 TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAIL- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y--~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all- 189 (385)
.|..+++++...+.... ...|+. ..|.+ ++++..++++.+..|.+.+ + -+|..++|+ +|+..++.+++
T Consensus 89 ~P~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~LR~aia~~~~~~~g~~~~-~-~~I~it~Ga~~al~~~~~~l~~ 160 (481)
T PTZ00377 89 FPADVVARAKEYLNAIGGGTGAYTD---SAGYP---FVRKAVAAFIERRDGVPKD-P-SDIFLTDGASSGIKLLLQLLIG 160 (481)
T ss_pred CCHHHHHHHHHHHHhCCCcccCcCc---ccCCH---HHHHHHHHHHHHhcCCCCC-h-hhEEEcCCHHHHHHHHHHHhcc
Confidence 46677887765443321 122433 23444 7888788888887776542 1 256677776 59999999998
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhc-----CCcEEEEcCCCCC
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGASAYP 263 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~-----~pklIi~~~s~~~ 263 (385)
+|||.|++.+|.|.++.. .+...|..+. +++++++ ++.+|++++++.++.. ++|+|++..++||
T Consensus 161 ~~gD~Vlv~~P~y~~y~~--------~~~~~g~~~v--~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NP 230 (481)
T PTZ00377 161 DPSDGVMIPIPQYPLYSA--------AITLLGGKQV--PYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNP 230 (481)
T ss_pred CCCCEEEECCCCchhHHH--------HHHHcCCEEE--EEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCC
Confidence 799999999997755432 3456666544 4445544 3489999999988542 6888877777776
Q ss_pred --CCCC---HHHHHHHHHHcCcEEEEeccccccccccC--cccCC------CC-C---C-c-EEEECCCccC---ccccE
Q 016668 264 --RDFD---YPRMRQIADAVGALLMMDMAHISGLVAAS--VVADP------FK-Y---C-D-VVTTTTHKSL---RGPRG 321 (385)
Q Consensus 264 --~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g--~~~~p------~~-g---a-D-iv~~S~hK~l---~Gprg 321 (385)
...+ +++|+++|+++|++||+|+++ ..+++.+ .+++. +. . . . +++.|++|++ +|+|.
T Consensus 231 TG~~~s~e~~~~i~~~a~~~~~~iI~De~Y-~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRi 309 (481)
T PTZ00377 231 TGQVLTRDVMEEIIKFCYEKGIVLMADEVY-QENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRG 309 (481)
T ss_pred CCcCCCHHHHHHHHHHHHHCCCEEEEehhh-HhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCce
Confidence 3444 788999999999999999997 4555422 12221 11 1 1 2 5678999974 69999
Q ss_pred EEEEE---eCCCCchhHHHHHHhhcc
Q 016668 322 GMIFF---KKDPVLGVELESAINNAV 344 (385)
Q Consensus 322 G~I~~---~~~~~~~~~~~~~i~~~~ 344 (385)
||+++ ++ ++.+++....
T Consensus 310 G~~~~~~~p~------~li~~l~~~~ 329 (481)
T PTZ00377 310 GYFELTNIPP------EVREQIYKLA 329 (481)
T ss_pred EEEEEeCCCH------HHHHHHHHHh
Confidence 99987 44 6777776544
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-16 Score=156.84 Aligned_cols=160 Identities=21% Similarity=0.169 Sum_probs=118.8
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..++||+ ++++++|.+. .+.++||+.|+..++.++++|||+|++.++.|++..... ...+...|
T Consensus 55 ~~p~~~~le~----~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~----~~~~~~~G 121 (418)
T TIGR01326 55 MNPTTDVLEQ----RIAALEGGVA-----ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLF----KHTLKRLG 121 (418)
T ss_pred CChhHHHHHH----HHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHH----HHHHHHcC
Confidence 5566666665 6889999865 477899999999999999999999999988776532210 01223456
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+. .++. .|++++++.+++ ++|+|+++.+++| ...|+++|+++|+++|+++++|++++.+. ..
T Consensus 122 ~~v~--~v~~------~d~~~l~~~l~~-~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~-----~~ 187 (418)
T TIGR01326 122 IEVR--FVDP------DDPEEFEKAIDE-NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPY-----LC 187 (418)
T ss_pred cEEE--EECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhh-----cC
Confidence 5443 3322 289999999865 7899999877776 56799999999999999999999987553 23
Q ss_pred CCCC-CCcEEEECCCccCcc--ccEEEEEEeC
Q 016668 300 DPFK-YCDVVTTTTHKSLRG--PRGGMIFFKK 328 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~G--prgG~I~~~~ 328 (385)
.+++ ++|++++|+||++.| .+.|+++.++
T Consensus 188 ~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 188 RPIDHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred CchhcCCeEEEECccccccCCccceEEEEEec
Confidence 4555 799999999999865 4445555543
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=152.83 Aligned_cols=226 Identities=15% Similarity=0.065 Sum_probs=146.8
Q ss_pred ccccccCCCCCcHH-HHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeec-CCcHHHH
Q 016668 104 SLELIASENFTSRA-VMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPAN 181 (385)
Q Consensus 104 ~l~Liasen~~s~~-V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~-~sGs~A~ 181 (385)
.+.++++...+++. |++++...+.. .. +.+.++.+.++ .+++.++++||++.. +.+ +++ .|||.++
T Consensus 13 ~~~f~~Gp~~~~~~~v~~a~~~~~~~------~~---hr~~~f~~~~~-~~r~~l~~l~~~~~~-~~v-~~~~gs~T~~~ 80 (378)
T PRK03080 13 DPRFSSGPCKKRPGWQLEALADALLG------RS---HRQKPVKALLK-RVIEGTRELLSLPEG-YEV-GIVPGSDTGAW 80 (378)
T ss_pred CCCcCCCCcCCChHHHHHHHHhhhcc------cC---cCCHHHHHHHH-HHHHHHHHHhCCCCC-ceE-EEECCchHHHH
Confidence 46677777788888 99998754321 11 11335554454 589999999998532 213 334 4788999
Q ss_pred HHHHHHhccC-CCEEeecCCCCCccccCCccccccccccCcc-eEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 016668 182 FEVYTAILKP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG- 258 (385)
Q Consensus 182 ~~a~~all~p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~- 258 (385)
.+++.+++++ ++.|+. +-+|+. .+.. ...+..|. .++.++. + .++.+|+++++. +|+|.+.
T Consensus 81 ~~~~~~l~~~~~~~vi~-~g~f~~----~~~~--~~~~~~g~~~v~~~~~--~-~g~~~d~~~i~~------~~~V~~~h 144 (378)
T PRK03080 81 EMALWSLLGARRVDHLA-WESFGS----KWAT--DVVKQLKLEDPRVLEA--D-YGSLPDLSAVDF------DRDVVFTW 144 (378)
T ss_pred HHHHHhcCCCCcceEEE-eCHHHH----HHHH--HHHhhcCCCCceEecc--C-CCCCCCHhhcCC------CCCEEEEe
Confidence 9999999885 455554 434433 2210 01123455 5555553 3 345788777432 4555543
Q ss_pred -CCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCCchhHH
Q 016668 259 -ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 336 (385)
Q Consensus 259 -~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~ 336 (385)
.+.+|...|+++|++ +++|+++++|++|+.|.. +-.++.+|++++|.||||.||.| |+++.+++ .
T Consensus 145 ~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~-----pidv~~iD~~~~s~~K~l~~P~G~g~l~v~~~------~ 211 (378)
T PRK03080 145 NGTTTGVRVPVARWIG--ADREGLTICDATSAAFAL-----PLDWSKLDVYTFSWQKVLGGEGGHGMAILSPR------A 211 (378)
T ss_pred cCCccceeccchhhcc--ccCCCeEEEecccccccC-----CCCHHHCcEEEEehhhhCCCCCceEEEEECHH------H
Confidence 345688899999999 889999999999988754 22333689999999999999988 88888874 3
Q ss_pred HHHHhhc---------------------cC-CCccCCChHHHHHHHHHHHHHhhCc
Q 016668 337 ESAINNA---------------------VF-PGLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 337 ~~~i~~~---------------------~f-p~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
.+++... .| .+..++|....+.++..|++.+.+.
T Consensus 212 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~ 267 (378)
T PRK03080 212 VERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSI 267 (378)
T ss_pred HHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHc
Confidence 3332210 01 1233457777888889999988775
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-16 Score=154.62 Aligned_cols=172 Identities=17% Similarity=0.155 Sum_probs=122.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|-+.|. |++.+++||+ +++++.|.++ .|.+.||+.|+.+++.++++|||+|+++...||+.....
T Consensus 55 ~~~Y~r~--~~P~~~~lE~----~la~leg~~~-----av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~--- 120 (384)
T PRK06434 55 PYIYTRW--GNPTVQAFEE----KYAVLENAEH-----ALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFF--- 120 (384)
T ss_pred CcceeCC--CChhHHHHHH----HHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHH---
Confidence 3444444 7898899887 5888999987 478899999999999999999999999876666543210
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
...+...|..+. .+++++. ..++ +...++|+|++..+.+| ...|+++|.++|+++| +++|+++++
T Consensus 121 -~~~~~~~Gi~v~--fvd~~~~-~~~~-------l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s 187 (384)
T PRK06434 121 -NKVLKTLGIHVD--YIDTDRL-NSLD-------FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFAS 187 (384)
T ss_pred -HHHHHhcCcEEE--EECCCCh-hhee-------ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCC
Confidence 012344565444 4334321 1122 22236899999877665 5789999999999999 467999854
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHh
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~ 341 (385)
++ ...|++ ++|++++|.||++.|+. ||+|+++++ ++.+++.
T Consensus 188 ~~-----~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~-----~~~~~~~ 232 (384)
T PRK06434 188 PY-----NQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNK-----SIFNNLV 232 (384)
T ss_pred cc-----cCCchhcCCCEEEeecccccCCCCCceEEEEecCcH-----HHHHHHH
Confidence 42 235677 89999999999998865 788888775 5666554
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=155.35 Aligned_cols=158 Identities=24% Similarity=0.272 Sum_probs=119.1
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+.||+ .+++++|.+. .+.+.||+.|+.+++.++++|||+|++.++.|++.... + . ..+...|
T Consensus 61 ~~p~~~~le~----~lA~l~g~~~-----al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~-~-~--~~~~~~G 127 (427)
T PRK05994 61 TNPTNAVLEE----RVAALEGGTA-----ALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQ-F-G--HAFKSFG 127 (427)
T ss_pred CCccHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHH-H-H--HHHHhcC
Confidence 4455566665 6889999886 46789999999999999999999999998877664220 0 0 0123345
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+ ..++. .|++++++.+++ ++|+|++..+++| ...|+++|.++|+++|+++++|++|+.++. .
T Consensus 128 ~~v--~~vd~------~d~~~l~~ai~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~-----~ 193 (427)
T PRK05994 128 WQV--RWADA------DDPASFERAITP-RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL-----I 193 (427)
T ss_pred cEE--EEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc-----C
Confidence 533 33222 388999998865 7899999877665 578999999999999999999999976543 3
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEE
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFF 326 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~ 326 (385)
.|++ ++|+++.|+||++.|+. ||+++.
T Consensus 194 ~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~ 224 (427)
T PRK05994 194 RPIEHGADIVVHSLTKFLGGHGNSMGGIIVD 224 (427)
T ss_pred CccccCCcEEEEcCccccCCCCCcEEEEEEe
Confidence 5666 89999999999997764 566654
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-15 Score=150.03 Aligned_cols=195 Identities=11% Similarity=0.064 Sum_probs=127.6
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHD 193 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD 193 (385)
.|.+.+++....... ..|+. ..|.+ ++++...+++.+..+.+. +|..++|+ +|+..++.++++|||
T Consensus 100 ~p~~~~~~~~~~~~~--~~Y~~---~~g~~---~lr~~ia~~~~~~~~~~~-----~Iiit~G~~~al~~~~~~l~~pgd 166 (431)
T PRK15481 100 LPDLSRYFARLSRTP--RLYGD---APVSP---ELHAWAARWLRDDCPVAF-----EIDLTSGAIDAIERLLCAHLLPGD 166 (431)
T ss_pred hHHHHHHHHHhhhhh--hhcCC---cCCCH---HHHHHHHHHHhhccCCcC-----eEEEecCcHHHHHHHHHHhCCCCC
Confidence 455666665433221 12333 12433 565554455443332221 46666665 599999999999999
Q ss_pred EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCC--CCCCH--
Q 016668 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYP--RDFDY-- 268 (385)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~-~s~~~--~~~dl-- 268 (385)
.|++.+|.|.++.. .+...|..+..+ ++++ + .+|++++++.++. ++|+|++. .++|| ..++.
T Consensus 167 ~Vlv~~P~y~~~~~--------~~~~~g~~~~~v--~~~~-~-g~~~~~l~~~~~~-~~k~i~~~p~p~NPTG~~~s~~~ 233 (431)
T PRK15481 167 SVAVEDPCFLSSIN--------MLRYAGFSASPV--SVDA-E-GMQPEKLERALAQ-GARAVILTPRAHNPTGCSLSARR 233 (431)
T ss_pred EEEEeCCCcHHHHH--------HHHHcCCeEEee--ccCC-C-CCCHHHHHHHHhc-CCCEEEECCCCCCCCCccCCHHH
Confidence 99999997765432 345667654444 4553 2 4899999998865 78988876 67777 45554
Q ss_pred -HHHHHHHHHc-CcEEEEeccccccccccCcccCCCC-CCc--EEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 269 -PRMRQIADAV-GALLMMDMAHISGLVAASVVADPFK-YCD--VVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 269 -~~I~~ia~~~-ga~livD~ah~~Gli~~g~~~~p~~-gaD--iv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
++|.++|+++ +++|++|+++ ..+...+ .+.++. ..+ +++.|++|+| +|.|.|+++.++ ++.+.+..
T Consensus 234 ~~~l~~la~~~~~~~ii~De~Y-~~~~~~~-~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~------~~~~~~~~ 305 (431)
T PRK15481 234 AAALRNLLARYPQVLVIIDDHF-ALLSSSP-YHSVIPQTTQRWALIRSVSKALGPDLRLAFVASDS------ATSARLRL 305 (431)
T ss_pred HHHHHHHHHhcCCceEEecCch-hhhccCC-CCCCCcCCCCCEEEEeeeccccCCCceeEEEeCCH------HHHHHHHH
Confidence 4899999999 9999999986 4444322 223333 122 7889999998 778999999887 56676654
Q ss_pred c
Q 016668 343 A 343 (385)
Q Consensus 343 ~ 343 (385)
.
T Consensus 306 ~ 306 (431)
T PRK15481 306 R 306 (431)
T ss_pred H
Confidence 3
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=156.08 Aligned_cols=160 Identities=21% Similarity=0.208 Sum_probs=118.7
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+.||+ ++++++|.+. .+.+.||+.|+.+++.++++|||+|++.+..|++... .. ...+...|
T Consensus 67 ~~p~~~~Le~----~lA~l~g~~~-----av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~--~~--~~~l~~~G 133 (436)
T PRK07812 67 MNPTQDVVEQ----RIAALEGGVA-----ALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYN--LF--HYTLPKLG 133 (436)
T ss_pred CCchHHHHHH----HHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHH--HH--HHHhhcCe
Confidence 5676777775 6889999987 3778899999999999999999999998877765321 00 00122334
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
. ++..++ + ..|++++++.+++ ++|+|++..+++| ...|+++|.++|+++|+++++|++|..++. +
T Consensus 134 i--~v~~vd-d----~~d~e~l~~ai~~-~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~-----~ 200 (436)
T PRK07812 134 I--EVSFVE-D----PDDLDAWRAAVRP-NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL-----I 200 (436)
T ss_pred E--EEEEEC-C----CCCHHHHHHhCCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 3 333322 2 1389999998864 7899988776654 678999999999999999999999976543 3
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEe
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFK 327 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~ 327 (385)
.+++ |+|+++.|+||++.|+. +|.++.+
T Consensus 201 ~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~ 232 (436)
T PRK07812 201 RPLEHGADIVVHSATKYLGGHGTAIAGVIVDG 232 (436)
T ss_pred CchhcCCCEEEEecccccCCCCCeEEEEEEcC
Confidence 5666 89999999999997764 3555543
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-15 Score=147.68 Aligned_cols=197 Identities=18% Similarity=0.152 Sum_probs=133.2
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhc
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAIL 189 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all 189 (385)
+..+++.+++++....... ..|+.. .+ .++ ++.+++++|++.+ +|.+++|+ .++..++.+++
T Consensus 30 ~~~~~~~~~~a~~~~~~~~--~~y~~~---~~----~~l----r~~ia~~~~~~~~----~i~~~~G~~~~l~~~~~~l~ 92 (346)
T TIGR01141 30 PFGPPPKAKEALRAEADKL--HRYPDP---DP----AEL----KQALADYYGVDPE----QILLGNGSDEIIELLIRAFL 92 (346)
T ss_pred CCCCCHHHHHHHHHhHHHh--hcCCCC---CH----HHH----HHHHHHHhCcChH----HEEEcCCHHHHHHHHHHHhc
Confidence 3446888999988764321 233321 11 244 4467888898764 45566665 58888889999
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d 267 (385)
++||+|++++|.++.+. ......|.++.. +++++ ++.+|++++++.+.. ++++|+++.+++| ...+
T Consensus 93 ~~gd~v~~~~p~y~~~~--------~~~~~~g~~~~~--~~~~~-~~~~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~ 160 (346)
T TIGR01141 93 EPGDAVLVPPPTYSMYE--------ISAKIHGAEVVK--VPLDE-DGQLDLEDILVAIDD-KPKLVFLCSPNNPTGNLLS 160 (346)
T ss_pred CCCCEEEEcCCCHHHHH--------HHHHHcCCeEEE--eccCC-CCCCCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCC
Confidence 99999999998654321 123455665444 44553 478999999998744 7899988777765 5789
Q ss_pred HHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC-C-CcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHh
Q 016668 268 YPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-Y-CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 268 l~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~-g-aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
.+++.++|+.+ |+++++|++|. ++...+.....+. . .++++.|+||++ +|+|.|++++++ ++.+++.
T Consensus 161 ~~~~~~l~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~------~~~~~~~ 233 (346)
T TIGR01141 161 RSDIEAVLERTPEDALVVVDEAYG-EFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA------EIIDALN 233 (346)
T ss_pred HHHHHHHHHhCCCCcEEEEECchh-hhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCH------HHHHHHH
Confidence 99999999887 99999999985 4332211111111 2 237789999997 577889999876 6777776
Q ss_pred hc
Q 016668 342 NA 343 (385)
Q Consensus 342 ~~ 343 (385)
..
T Consensus 234 ~~ 235 (346)
T TIGR01141 234 KV 235 (346)
T ss_pred hc
Confidence 54
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=149.93 Aligned_cols=171 Identities=19% Similarity=0.139 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-CCCCcceeecCCcHHHHHHHHHHhcc------------CC--CEEeecCCCCCccccC
Q 016668 144 EYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK------------PH--DRIMGLDLPHGGHLSH 208 (385)
Q Consensus 144 ~~~~~le~~~~~~la~lfg~~-~~~~~~~V~~~sGs~A~~~a~~all~------------pG--D~Vl~~~~~~ggh~s~ 208 (385)
+...++|+.+++++++++|.+ ... ..+++++||.||+.++.++.. +| +.|+++++.|.++.
T Consensus 34 ~~~~~le~~~~~~~~~~~g~~~~~~--~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~-- 109 (345)
T cd06450 34 PAATEMEAEVVNWLAKLFGLPSEDA--DGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVE-- 109 (345)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCC--CEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHH--
Confidence 345689999999999999997 222 245677788899999888743 33 36777776543321
Q ss_pred CccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCC--CCCCCCHHHHHHHHHHcCcE
Q 016668 209 GFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASA--YPRDFDYPRMRQIADAVGAL 281 (385)
Q Consensus 209 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklIi~~~s~--~~~~~dl~~I~~ia~~~ga~ 281 (385)
..+...|..+..++ +++ ++.+|+++|++.+++. ++++|++..++ ++...|+++|.++|+++|++
T Consensus 110 ------~~~~~~g~~~~~v~--~~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~ 180 (345)
T cd06450 110 ------KAAAYLDVKVRLVP--VDE-DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLW 180 (345)
T ss_pred ------HHHHHHhcCeEEee--eCC-CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCe
Confidence 12334465544444 553 4589999999998641 57777665443 46778999999999999999
Q ss_pred EEEeccccccccccCccc---CCCCCCcEEEECCCccCccccE-EEEEEe
Q 016668 282 LMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFK 327 (385)
Q Consensus 282 livD~ah~~Gli~~g~~~---~p~~gaDiv~~S~hK~l~Gprg-G~I~~~ 327 (385)
+++|++|..+........ ..+.++|++++|+||++.+|.| |+++.+
T Consensus 181 l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~ 230 (345)
T cd06450 181 LHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR 230 (345)
T ss_pred EEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH
Confidence 999999976653211111 1123689999999999877754 655433
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=145.43 Aligned_cols=183 Identities=14% Similarity=0.083 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhc--c-CCCEEeecCCCCCccccCCccccccccccCc
Q 016668 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAIL--K-PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 146 ~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all--~-pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
.-.+.+...+++++++|++.... .+.+.+|| .++..++.++- + +||+|+++... |.+. .+.+.+.|
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~--a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~t---h~S~-----~kAi~~~G 172 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKS--AFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRID---QKSC-----IKAISTAG 172 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCE--EEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcC---hHHH-----HHHHHHcC
Confidence 44566677788999999983211 34556777 47777766653 2 69999988753 3332 14567888
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCC-C--CCCCHHHHHHHHHHcCcEEEEeccccccccccC
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAY-P--RDFDYPRMRQIADAVGALLMMDMAHISGLVAAS 296 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~-~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g 296 (385)
.....++..++++++.+|+++|++.+++. +.++++++.+++ + ...|+++|.++|+++|+++++|+||+.+.....
T Consensus 173 ~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~ 252 (444)
T TIGR03531 173 FEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYM 252 (444)
T ss_pred CeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhh
Confidence 86666553345567899999999999752 334555554443 2 467999999999999999999999975432211
Q ss_pred ccc-CCCC--CCcEEEECCCccCccc-cEEEEEEeCCCCchhHHHHHHhhc
Q 016668 297 VVA-DPFK--YCDVVTTTTHKSLRGP-RGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 297 ~~~-~p~~--gaDiv~~S~hK~l~Gp-rgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
... ..++ .+|++++|+||++..| .||+|+++++ ++.+.+...
T Consensus 253 ~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~-----el~~~i~~~ 298 (444)
T TIGR03531 253 ELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDE-----NFIQEISKS 298 (444)
T ss_pred hhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCH-----HHHHHHHHh
Confidence 111 1222 3799999999998765 3677878776 777777653
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=144.22 Aligned_cols=190 Identities=15% Similarity=0.077 Sum_probs=126.6
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHc--CCCCCCCcceeecCCcHH-HHHHHHHHhcc
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF--NLDENKWGVNVQPLSGSP-ANFEVYTAILK 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lf--g~~~~~~~~~V~~~sGs~-A~~~a~~all~ 190 (385)
+++.+.+++...+.. ..+|+. ..|.+ ++++..++++.... +++.+ +|.+++|+. ++..++.++++
T Consensus 50 ~~~~i~~~~~~~~~~--~~~Y~~---~~G~~---~lr~~ia~~~~~~~~~~~~~~----~i~~t~G~~~~l~~~~~~~~~ 117 (404)
T PRK09265 50 APDEILRDVIRNLPT--AQGYSD---SKGLF---SARKAIMQYYQQKGIPDVDVD----DIYIGNGVSELIVMAMQALLN 117 (404)
T ss_pred CCHHHHHHHHHHhhc--CCCCCC---CCCcH---HHHHHHHHHHhccCCCCCCcc----cEEEeCChHHHHHHHHHHhCC
Confidence 678888888765542 234554 23443 56555444443322 45553 566677765 78888999999
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d 267 (385)
|||+|++.+|.|..+.. .+...|.....++ .+.+ ++.+|++++++.+.. ++|+|++..++|| ...+
T Consensus 118 ~gd~Vlv~~p~y~~~~~--------~~~~~g~~~v~~~--~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPtG~~~~ 186 (404)
T PRK09265 118 NGDEVLVPAPDYPLWTA--------AVSLSGGKPVHYL--CDEEAGWFPDLDDIRSKITP-RTKAIVIINPNNPTGAVYS 186 (404)
T ss_pred CCCEEEEeCCCCcChHH--------HHHHcCCEEEEEe--cccccCCCCCHHHHHHhccc-cceEEEEECCCCCCCcCCC
Confidence 99999999987754321 2234555433333 4432 457999999998854 7898887777766 4566
Q ss_pred ---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---C-CCc-EEEECCCccC--ccccEEEEEEe
Q 016668 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCD-VVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 268 ---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~-gaD-iv~~S~hK~l--~GprgG~I~~~ 327 (385)
+++|.++|+++|+++++|+++ .++.+.+....++ . ... +++.|++|++ +|.|.|+++..
T Consensus 187 ~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~ 255 (404)
T PRK09265 187 KELLEEIVEIARQHNLIIFADEIY-DKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLS 255 (404)
T ss_pred HHHHHHHHHHHHHCCCEEEEehhh-hhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEe
Confidence 888999999999999999997 4555443221122 1 223 4678999997 68899999864
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=139.97 Aligned_cols=213 Identities=17% Similarity=0.126 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEE
Q 016668 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (385)
Q Consensus 146 ~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (385)
.+++++..++++...+|...... ..+.+.+|+.++..++.++.++||+|+++++.|.++.. .+...|..+.
T Consensus 38 ~~~l~~~l~~~l~~~~~~~~~~~-~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~--------~~~~~~~~~~ 108 (350)
T cd00609 38 LPELREAIAEWLGRRGGVDVPPE-EIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEA--------AARLAGAEVV 108 (350)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcc-eEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCCEEE
Confidence 34777777777777666321111 13445566789999999999999999999876654421 3345555444
Q ss_pred EEeccccCCCCCCCH--HHHHHHhhhcCCcEEEEcCCCC--CCCCCHH---HHHHHHHHcCcEEEEeccccccccccCcc
Q 016668 226 SMPYRLDESTGLVDY--DMLEKTAILFRPKLIIAGASAY--PRDFDYP---RMRQIADAVGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 226 ~i~~~~~~~~~~iD~--d~le~~i~~~~pklIi~~~s~~--~~~~dl~---~I~~ia~~~ga~livD~ah~~Gli~~g~~ 298 (385)
.++ .++ ++..+. +.+++... .++++|++..+++ |...|++ +|.++|+++|+++++|++|+.+. ..+..
T Consensus 109 ~i~--~~~-~~~~~~~~~~~~~~~~-~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~-~~~~~ 183 (350)
T cd00609 109 PVP--LDE-EGGFLLDLELLEAAKT-PKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELV-YDGEP 183 (350)
T ss_pred EEe--ccc-ccCCccCHHHHHhhcC-ccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhce-eCCcc
Confidence 444 442 333333 55655543 4788888866654 4556654 55589999999999999985443 22222
Q ss_pred c----CCCC-CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCch
Q 016668 299 A----DPFK-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE 371 (385)
Q Consensus 299 ~----~p~~-gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~ 371 (385)
+ ..-. +.|+++.|+||++ +|++.|+++++++ ++.+.+...... ..++++.....++..+++... .+
T Consensus 184 ~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~ 256 (350)
T cd00609 184 PPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE-----ELLERLKKLLPY-TTSGPSTLSQAAAAAALDDGE-EH 256 (350)
T ss_pred cccccCcCccCcEEEEeecccccCCcccceEEEecCHH-----HHHHHHHHHHHh-cccCCChHHHHHHHHHHhCcH-HH
Confidence 1 1112 5789999999998 4678899999884 466666554322 234566677777777776543 33
Q ss_pred HHHHHHHH
Q 016668 372 FKVYQNKS 379 (385)
Q Consensus 372 ~~~y~~~v 379 (385)
+++.++++
T Consensus 257 ~~~~~~~~ 264 (350)
T cd00609 257 LEELRERY 264 (350)
T ss_pred HHHHHHHH
Confidence 44444443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.4e-15 Score=138.33 Aligned_cols=238 Identities=17% Similarity=0.132 Sum_probs=169.6
Q ss_pred ccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHH
Q 016668 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (385)
Q Consensus 106 ~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~ 185 (385)
-++|.+.-+|+.|++|+... ..|+.. +..-+|-+...+-++..|....+. ..++..+|+.|+.+++
T Consensus 20 L~gPGPsnl~~~V~~A~~~~-----~lgh~s-------Pe~~qIm~~v~egikyVFkT~n~~--tf~isgsGh~g~E~al 85 (385)
T KOG2862|consen 20 LLGPGPSNLSGRVQEAMSRP-----SLGHMS-------PEFVQIMDEVLEGIKYVFKTANAQ--TFVISGSGHSGWEAAL 85 (385)
T ss_pred eecCCCcCCCHHHHHhhcCC-----ccccCC-------HHHHHHHHHHHHHHHHHhccCCCc--eEEEecCCcchHHHHH
Confidence 56788889999999998633 334333 222245555667788999988754 4678889999999999
Q ss_pred HHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEE--cCCCCC
Q 016668 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA--GASAYP 263 (385)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~--~~s~~~ 263 (385)
..++.|||+|++... |..++.+. ...+..|..+.+++.+. .....++++++.+..++|++|.+ +.++++
T Consensus 86 ~N~lePgd~vLv~~~---G~wg~ra~---D~~~r~ga~V~~v~~~~---G~~~~le~i~~~lsqh~p~~vfv~hgdsSTg 156 (385)
T KOG2862|consen 86 VNLLEPGDNVLVVST---GTWGQRAA---DCARRYGAEVDVVEADI---GQAVPLEEITEKLSQHKPKAVFVTHGDSSTG 156 (385)
T ss_pred HhhcCCCCeEEEEEe---chHHHHHH---HHHHhhCceeeEEecCc---ccCccHHHHHHHHHhcCCceEEEEecCcccc
Confidence 999999999998753 55554431 23467788777776332 45789999999998899999866 456788
Q ss_pred CCCC-HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHH---
Q 016668 264 RDFD-YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL--- 336 (385)
Q Consensus 264 ~~~d-l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~--- 336 (385)
...| ++.+.++|++|++++++|..-+.|-. +--++ ++|+..+..+|.|.+|.| +.|...+.. ++.+
T Consensus 157 V~q~~~~~~g~lc~k~~~lllVD~VaSlggt-----~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka--~~~~~~r 229 (385)
T KOG2862|consen 157 VLQDLLAISGELCHKHEALLLVDTVASLGGT-----EFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKA--LEAIRDR 229 (385)
T ss_pred ccchHHHHHHHHhhcCCeEEEEechhhcCCc-----cceehhhcccEEEecchhhcCCCCCcceeecCHHH--HHHHhhc
Confidence 8888 67788999999999999987655421 22233 899999999999999999 666555431 0111
Q ss_pred --------HHHHhhccCCCc-------cCCChHHHHHHHHHHHHHhhCchHH
Q 016668 337 --------ESAINNAVFPGL-------QGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 337 --------~~~i~~~~fp~~-------qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
.+.++...|.+. .-+|....+.+|-+||+++.+++.+
T Consensus 230 K~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~ 281 (385)
T KOG2862|consen 230 KTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLE 281 (385)
T ss_pred cCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 111222223222 2357788999999999999877764
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=146.15 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=128.4
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD 193 (385)
+||.+++++....... .+ |+..+...+||+ .+++++|.+. .+.+.+|+.++..++.++++|||
T Consensus 12 p~~~~~~a~~~~~~~~-------~~-Y~~~~~~~~L~~----~la~~~g~~~-----~~v~~~g~~a~~~~l~~~~~~gd 74 (333)
T PRK10534 12 PSRAMLEAMMAAPVGD-------DV-YGDDPTVNALQD----YAAELSGKEA-----ALFLPTGTQANLVALLSHCERGE 74 (333)
T ss_pred CCHHHHHHHHhccCCC-------cc-cCCCHHHHHHHH----HHHHHhCCCe-----EEEeCchHHHHHHHHHHhcCCCC
Confidence 6899999986433221 11 323344456665 5788899977 25677888899989999999999
Q ss_pred EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCCCCCCCH
Q 016668 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYPRDFDY 268 (385)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~~~~~dl 268 (385)
+|+++.+.|... +.. ......+ ..+.++++++ +++.+|+++|++.+.+. ++|+|+++++++|...+.
T Consensus 75 ~vi~~~~~~~~~--~~~----~~~~~~~-~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~G~v~~~ 146 (333)
T PRK10534 75 EYIVGQAAHNYL--YEA----GGAAVLG-SIQPQPIDAA-ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHNGKVLPR 146 (333)
T ss_pred eeEEechhhhhH--hcC----CchHHhc-CceEEeecCC-CCCCCCHHHHHHhhcccCcCcccceEEEEecCCCCeecCH
Confidence 999876644211 100 0011222 1234444454 35789999999988542 578998888888877765
Q ss_pred H---HHHHHHHHcCcEEEEecccccccccc-CcccCCC-CCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 269 P---RMRQIADAVGALLMMDMAHISGLVAA-SVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 269 ~---~I~~ia~~~ga~livD~ah~~Gli~~-g~~~~p~-~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+ +|.++|+++|++|++|+||..+-... +.....+ .+.|.++.|+||.++.+.||++++++ ++.+.+...
T Consensus 147 ~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~------~~i~~~~~~ 220 (333)
T PRK10534 147 EYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNR------DYIKRARRW 220 (333)
T ss_pred HHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCH------HHHHHHHHH
Confidence 5 55678899999999999975321110 1111111 24576667899988766666787776 566766554
Q ss_pred c
Q 016668 344 V 344 (385)
Q Consensus 344 ~ 344 (385)
.
T Consensus 221 ~ 221 (333)
T PRK10534 221 R 221 (333)
T ss_pred H
Confidence 3
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=151.84 Aligned_cols=170 Identities=18% Similarity=0.188 Sum_probs=123.6
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++....||+ .+++++|.+. .+.+.||+.|+..++.++++|||+|++.+|.|+++.... ...+...|
T Consensus 81 ~~Pt~~~Le~----~lA~leg~~~-----~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~----~~~l~~~G 147 (427)
T PRK07049 81 NHPNSEIVED----RLAVYEGAES-----AALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLL----AKTFRNFG 147 (427)
T ss_pred CCcCHHHHHH----HHHHHhCCCc-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHH----HHHHHhcC
Confidence 4565667775 5788999775 467889999999999999999999999999887753210 00123345
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhh----hcCCcEEEEcCCCCC--CCCCHHHHHHHHHH------cCcEEEEecccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAI----LFRPKLIIAGASAYP--RDFDYPRMRQIADA------VGALLMMDMAHI 289 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~----~~~pklIi~~~s~~~--~~~dl~~I~~ia~~------~ga~livD~ah~ 289 (385)
.. .+.+. + ..|++++++.+. ..++|+|+++.++|| ...|+++|.+++++ +++++++|+++.
T Consensus 148 i~--~v~~~-~----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~ 220 (427)
T PRK07049 148 VG--AVGFA-D----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLL 220 (427)
T ss_pred cE--EEEEe-C----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcc
Confidence 43 33332 1 257778876664 236899999988887 56899999999988 799999999964
Q ss_pred ccccccCcccCCCC-CCcEEEECCCccCcc---ccEEEEEEeCCCCchhHHHHHHhh
Q 016668 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 290 ~Gli~~g~~~~p~~-gaDiv~~S~hK~l~G---prgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
..+ ...|++ ++|+++.|++|++.| .++|+++.++ ++.+++..
T Consensus 221 ~~~-----~~~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~------~l~~~l~~ 266 (427)
T PRK07049 221 GPV-----FQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRK------ALIRQVRA 266 (427)
T ss_pred ccc-----cCCccccCCCEEEEcCceeecCCCCcEEEEEECCH------HHHHHHHH
Confidence 322 234556 789999999999874 4889998876 56666654
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-15 Score=147.24 Aligned_cols=209 Identities=18% Similarity=0.150 Sum_probs=142.4
Q ss_pred hccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-
Q 016668 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP- 179 (385)
Q Consensus 103 ~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~- 179 (385)
.-++|-..+| .+++.+++++.+.+......+|+.. |. .+++ +.+++++|.+.. .+|.+++|+.
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~----~~---~~lr----~~ia~~~~~~~~---~~I~~t~G~~~ 92 (356)
T PRK04870 27 GMVKLDAMENPYRLPAELRAELGERLAEVALNRYPDP----RA---AALK----AALRAAMGVPAG---ADVLLGNGSDE 92 (356)
T ss_pred CceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCCC----CH---HHHH----HHHHHHhCcCCC---CcEEEcCCHHH
Confidence 3455555555 4689999999877643222345531 22 2444 457778887642 2567788875
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
++..++.++++|||+|++.+|.+.++.. .+...|..+. +++++ +++.+|++++++.+...++|+|+++.
T Consensus 93 ~i~~~~~~~~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~~--~i~~~-~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 93 LIQLLALACAKPGATVLAPEPGFVMYRM--------SAKLAGLEFV--GVPLT-ADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred HHHHHHHHhcCCCCEEEECCCCHHHHHH--------HHHHcCCEEE--EecCC-CCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 8888888889999999999986654321 3346676544 44455 35789999999998655789998887
Q ss_pred CCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCc-EEEECCCcc-CccccEEEEEEeCCCCchh
Q 016668 260 SAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD-VVTTTTHKS-LRGPRGGMIFFKKDPVLGV 334 (385)
Q Consensus 260 s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaD-iv~~S~hK~-l~GprgG~I~~~~~~~~~~ 334 (385)
++|| ...+.+++.++++..+.++|+|+++. .+......+ .+. ... +++.|++|. ++|.|.|++++++
T Consensus 162 p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~-~~~~~~~~~-~~~~~~~vi~~~S~SK~~~~GlRiG~~i~~~------ 233 (356)
T PRK04870 162 PNNPTGNLFDDADVERIIEAAPGLVVVDEAYQ-PFAGDSWLP-RLARFPNLLVMRTVSKLGLAGLRLGYLAGHP------ 233 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCEEEEECCch-hhcCcchHH-HHhhCCCEEEEecchhhhhHHHhhhhhhCCH------
Confidence 7776 57788888888887799999999973 333211111 122 223 689999993 3788999999877
Q ss_pred HHHHHHhhcc
Q 016668 335 ELESAINNAV 344 (385)
Q Consensus 335 ~~~~~i~~~~ 344 (385)
++.+++....
T Consensus 234 ~~i~~~~~~~ 243 (356)
T PRK04870 234 AWIAELDKVR 243 (356)
T ss_pred HHHHHHHHcc
Confidence 5777776543
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=164.54 Aligned_cols=164 Identities=20% Similarity=0.173 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcHH---HHHHHHHHhccC-CC----EEeecCCCCCccccCCcccccccccc
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSP---ANFEVYTAILKP-HD----RIMGLDLPHGGHLSHGFMTPKRRVSG 219 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~---A~~~a~~all~p-GD----~Vl~~~~~~ggh~s~~~~~~~~~~~~ 219 (385)
++-..+++++++++|.+. +.+++.+|++ |++.++.+++++ || +|+++..+|+.++. .+.+
T Consensus 568 ~~~~~~r~~la~i~g~~~----v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a--------~a~~ 635 (993)
T PLN02414 568 EMFEDLGDLLCEITGFDS----FSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPA--------SAAM 635 (993)
T ss_pred HHHHHHHHHHHHHhCCCe----EEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHH--------HHHH
Confidence 444458899999999965 5677777754 888888999876 88 89999988876643 3345
Q ss_pred CcceEEEEeccccCCCCCCCHHHHHHHhhh--cCCcEEEEcCCC-C-CCCCCHHHHHHHHHHcCcEEEEecccccccccc
Q 016668 220 TSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASA-Y-PRDFDYPRMRQIADAVGALLMMDMAHISGLVAA 295 (385)
Q Consensus 220 ~g~~~~~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~s~-~-~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~ 295 (385)
.|.++..++ .+ ++|.+|+++|++++++ .++++|++..++ . +...|+++|+++||++|+++++|++|..++..
T Consensus 636 ~G~~vv~v~--~d-~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~- 711 (993)
T PLN02414 636 CGMKIVVVG--TD-AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVG- 711 (993)
T ss_pred CCCEEEEec--cC-CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccC-
Confidence 677666666 44 4689999999999975 246777765544 3 35667999999999999999999999877632
Q ss_pred CcccCCCC-CCcEEEECCCccCccccE------EEEEEeCC
Q 016668 296 SVVADPFK-YCDVVTTTTHKSLRGPRG------GMIFFKKD 329 (385)
Q Consensus 296 g~~~~p~~-gaDiv~~S~hK~l~Gprg------G~I~~~~~ 329 (385)
...|.+ |+||+++|.||+|.||.| |++.+++.
T Consensus 712 --l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~ 750 (993)
T PLN02414 712 --LTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 750 (993)
T ss_pred --cCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchh
Confidence 224555 899999999999987763 78888774
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=149.08 Aligned_cols=236 Identities=14% Similarity=0.115 Sum_probs=143.1
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCC-CCCC---cHHHHHHHHHHHHHHHHHcCCCCCCCcceeec-CCcHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGG---NEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSP 179 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r-~~~G---~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~-~sGs~ 179 (385)
+++.|....+|+.|++++..++.+ +. ++++. +..+ .++.+.++ .+++.++++||++.+ +.+ |++ .|||.
T Consensus 1 ~~~~pGp~~~p~~V~~a~~~~~~~-~~--~~~rg~~~~~~r~~~~~~~~~-~~r~~l~~l~~~~~~-~~v-vf~~gs~T~ 74 (355)
T cd00611 1 INFSAGPAALPEEVLEQAQKELLD-FN--GLGMSVMEMSHRSKDFEAIVN-EAESDLRELLNIPDN-YKV-LFLQGGATG 74 (355)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-cc--cCCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCC-ceE-EEEcCCchH
Confidence 467889999999999999988754 32 33321 1122 34444555 489999999998432 213 333 44888
Q ss_pred HHHHHHHHhcc---CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCH-HHHHHHhhhcCCcEE
Q 016668 180 ANFEVYTAILK---PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY-DMLEKTAILFRPKLI 255 (385)
Q Consensus 180 A~~~a~~all~---pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~-d~le~~i~~~~pklI 255 (385)
|+.+++.++++ +||.|++. .+.|.+. +.....|..++.++. +++....|. +..+..+. .++|+|
T Consensus 75 a~~~~~~~l~~~~~~~~~i~~g------~~~~~~~---~~a~~~g~~~~~~~~--~~~g~~~~~~~~~~~~~~-~~~~lV 142 (355)
T cd00611 75 QFAAVPLNLLGDKGTADYVVTG------AWSAKAA---KEAKRYGGVVVIVAA--KEEGKYTKIPDVETWDLA-PDAAYV 142 (355)
T ss_pred HHHHHHHhcCCCCCeEEEEECC------HHHHHHH---HHHHhcCCCcEEEec--ccccCCCCCCCHhhcCCC-CCCCEE
Confidence 99999999987 56666542 2222221 112344665666653 211112132 22222233 378988
Q ss_pred EEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCCchh
Q 016668 256 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGV 334 (385)
Q Consensus 256 i~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~ 334 (385)
.+....+..-..+ .++++.+|+++++|++|++|.. +-.++..|++++|.||+| ||.| |+++.+++
T Consensus 143 ~~~h~~t~tG~~~---~~i~~~~g~~~~VDa~qs~g~~-----~idv~~~~~~~ss~~K~l-GP~G~g~l~~~~~----- 208 (355)
T cd00611 143 HYCSNETIHGVEF---DEVPDTGGVPLVADMSSNILSR-----PIDVSKFGVIYAGAQKNL-GPAGVTVVIVRKD----- 208 (355)
T ss_pred EEeCCcccccEEc---ceecccCCCeEEEEccccccCC-----CCCHHHhCEEEeeccccc-CCCceEEEEECHH-----
Confidence 7755443321122 2456669999999999988754 223334567778899976 7998 88888774
Q ss_pred HHHHHHhhc-----------cCCCccCCChHHHHHHHHHHHHHhhCc-hHH
Q 016668 335 ELESAINNA-----------VFPGLQGGPHNHTIGGLAVCLKHAQSP-EFK 373 (385)
Q Consensus 335 ~~~~~i~~~-----------~fp~~qg~p~~~~iaala~Al~e~~~~-~~~ 373 (385)
+.+++... ......++|+.+.+.++..|++.+.+. +..
T Consensus 209 -~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e 258 (355)
T cd00611 209 -LLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVE 258 (355)
T ss_pred -HHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHH
Confidence 22221110 001124689999999999999988776 453
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.2e-14 Score=140.29 Aligned_cols=199 Identities=18% Similarity=0.172 Sum_probs=128.6
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceeecCCc-HHHHHHHHHHhc
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSG-SPANFEVYTAIL 189 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg--~~~~~~~~~V~~~sG-s~A~~~a~~all 189 (385)
.+++.+.+++..... ...+|+. ..|.+ ++++..++++. ..| ++.+ +|.+++| +.|+..++.+++
T Consensus 43 ~~~~~~~~a~~~~~~--~~~~Y~~---~~g~~---~lr~~ia~~~~-~~~~~~~~~----~i~~t~G~~~al~~~~~~l~ 109 (397)
T PRK07568 43 KTPEVFFEAIKNYDE--EVLAYSH---SQGIP---ELREAFAKYYK-KWGIDVEPD----EILITNGGSEAILFAMMAIC 109 (397)
T ss_pred CCCHHHHHHHHHHhc--CCcCcCC---CCCCH---HHHHHHHHHHH-HhCCCCCcc----eEEEcCChHHHHHHHHHHhc
Confidence 457888888865432 1223443 23443 56655555544 233 3443 4445554 569999999999
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC-C-CCHHHHHHHhhhcCCcEEEEcCCCCCC--C
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG-L-VDYDMLEKTAILFRPKLIIAGASAYPR--D 265 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~-~-iD~d~le~~i~~~~pklIi~~~s~~~~--~ 265 (385)
+|||+|++++|.+..+.. .....|..+..++ ++.+++ . .|++++++.++. ++|+|++..+++|+ .
T Consensus 110 ~~gd~Vl~~~p~y~~~~~--------~~~~~g~~~~~v~--~~~~~g~~~~~~~~l~~~~~~-~~~~v~i~~p~NPtG~~ 178 (397)
T PRK07568 110 DPGDEILVPEPFYANYNG--------FATSAGVKIVPVT--TKIEEGFHLPSKEEIEKLITP-KTKAILISNPGNPTGVV 178 (397)
T ss_pred CCCCEEEEecCCCccHHH--------HHHHcCCEEEEee--cCcccCCCCCCHHHHHHhcCc-cceEEEEECCCCCCCcc
Confidence 999999999886543321 2245566544444 443333 3 478999998864 68888877777663 3
Q ss_pred C---CHHHHHHHHHHcCcEEEEeccccccccccCc-ccCCCC--C-Cc--EEEECCCccC--ccccEEEEEEeCCCCchh
Q 016668 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--Y-CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGV 334 (385)
Q Consensus 266 ~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p~~--g-aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~ 334 (385)
. ++++|.++|+++|+++++|+++ .++...+. .++... + .+ +++.|++|++ +|.|.|++++.++
T Consensus 179 ~~~~~~~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~----- 252 (397)
T PRK07568 179 YTKEELEMLAEIAKKHDLFLISDEVY-REFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNK----- 252 (397)
T ss_pred CCHHHHHHHHHHHHHCCcEEEEeccc-hhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCH-----
Confidence 3 4789999999999999999996 45554432 222222 2 23 6789999997 5889999998643
Q ss_pred HHHHHHh
Q 016668 335 ELESAIN 341 (385)
Q Consensus 335 ~~~~~i~ 341 (385)
++.+.+.
T Consensus 253 ~~~~~~~ 259 (397)
T PRK07568 253 ELIAAAM 259 (397)
T ss_pred HHHHHHH
Confidence 5655543
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=148.80 Aligned_cols=251 Identities=18% Similarity=0.142 Sum_probs=164.1
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
..+..+++.+.+++...+...- +.++ .+. ...++|+.+..++++++|.+... .-+++++||+||+.++.+.
T Consensus 69 ~~~~~~~~~a~~~~~~~~~~nl--~d~~--~~p---~a~~~E~~~v~~l~~l~~~~~~~--~G~~t~GgTean~lal~aa 139 (460)
T COG0076 69 FCPTRVPPVAAELLVSALNKNL--GDPD--ESP---AAAELEERVVNMLSDLLGAPEEA--SGTFTSGGTEANLLALLAA 139 (460)
T ss_pred cCCCCCHHHHHHHHHHHHhhcC--CCcc--cCh---hHHHHHHHHHHHHHHHhCCCCCC--ceEEEcChHHHHHHHHHHH
Confidence 4566667777777776664322 3333 122 34489999999999999996433 3456788899999777654
Q ss_pred cc-----C---CC------EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCc-
Q 016668 189 LK-----P---HD------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK- 253 (385)
Q Consensus 189 l~-----p---GD------~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pk- 253 (385)
-+ . +. +|+++.- +|++. .|.+.+.|.+.+.++ .++.+..+|++++++.+.+.+..
T Consensus 140 r~~~~~~~~~~~~~~~~~P~ii~s~~---aH~s~-----~Kaa~~lG~~~~~v~--~~~~~~~id~~~l~~~i~~~t~~g 209 (460)
T COG0076 140 RERWRKRALAESGKPGGKPNIVCSET---AHFSF-----EKAARYLGLGLRRVP--TVPTDYRIDVDALEEAIDENTIGG 209 (460)
T ss_pred HHHHHHHhhhcccccCCCCeEEecCc---chhHH-----HHHHHHhCCCceeEE--eccCccccCHHHHHHHHHhhccCc
Confidence 11 1 11 5776553 56553 246678888777777 33336799999999999876665
Q ss_pred -EE-EEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCc--cc--CCCCCCcEEEECCCccCccccE-EEEEE
Q 016668 254 -LI-IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV--VA--DPFKYCDVVTTTTHKSLRGPRG-GMIFF 326 (385)
Q Consensus 254 -lI-i~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~--~~--~p~~gaDiv~~S~hK~l~Gprg-G~I~~ 326 (385)
+| +++.+.++..-|+++|.+||+++|+++++|+|.+..+..... .. .-++++|-++.++||++..|.+ |+++.
T Consensus 210 ~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~ 289 (460)
T COG0076 210 VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLF 289 (460)
T ss_pred eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEE
Confidence 44 346667788889999999999999999999996433331111 11 1223789999999999877765 88888
Q ss_pred eCCCCchhHHHHHHhhccCCC---------ccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 327 KKDPVLGVELESAINNAVFPG---------LQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 327 ~~~~~~~~~~~~~i~~~~fp~---------~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
+++. .+.+.+....++. +.++..-...++.-..++.+-.++|++-.++.+++
T Consensus 290 rd~e----~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~ 350 (460)
T COG0076 290 RDEE----ALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLEL 350 (460)
T ss_pred ECHH----HhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHH
Confidence 8861 2333332222111 11222233555555567666667777777766654
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-15 Score=145.13 Aligned_cols=200 Identities=22% Similarity=0.205 Sum_probs=134.5
Q ss_pred ccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HH
Q 016668 104 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA 180 (385)
Q Consensus 104 ~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A 180 (385)
-++|-.+++. +++.+++++.+.+.+.. ..||.. |. .++ ++.++++++++.+ +|..++|+ +|
T Consensus 26 ~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-~~y~~~----~~---~~l----r~aia~~~~~~~~----~I~it~G~~~a 89 (353)
T PRK05387 26 LIKLNTNENPYPPSPKVLEAIRAALGDDL-RLYPDP----NA---DAL----RQAIAAYYGLDPE----QVFVGNGSDEV 89 (353)
T ss_pred eeeccCCCCCCCCCHHHHHHHHHHhhhhh-hcCCCC----cH---HHH----HHHHHHHhCCCHH----HEEEcCCHHHH
Confidence 3666655554 47889999886654322 234431 21 234 4467778888774 56677776 59
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
+..++.++++|||+|++++|.|..+.. .....|..+..++ ++ +++.+|++++++ ..++|++..+
T Consensus 90 l~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~-----~~~~v~~~~P 153 (353)
T PRK05387 90 LAHAFLAFFNHDRPLLFPDITYSFYPV--------YAGLYGIPYEEIP--LD-DDFSIDVEDYLR-----PNGGIIFPNP 153 (353)
T ss_pred HHHHHHHhcCCCCEEEEeCCCHHHHHH--------HHHHcCCEEEEee--cC-CCCCCCHHHHHh-----cCCEEEEeCC
Confidence 999999999999999999986643321 2345676554444 54 356799998863 3467777777
Q ss_pred CCC--CCCCHHHHHHHHHHc-CcEEEEeccccccccccCcccCCCC--CCcEEEECCCccC--ccccEEEEEEeCCCCch
Q 016668 261 AYP--RDFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (385)
Q Consensus 261 ~~~--~~~dl~~I~~ia~~~-ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~ 333 (385)
+|| ...+.+++.++++.+ ++++++|++|. .+. .......++ .-.+++.|++|++ +|+|.|++++++
T Consensus 154 ~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~-~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~----- 226 (353)
T PRK05387 154 NAPTGIALPLAEIERILAANPDSVVVIDEAYV-DFG-GESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHP----- 226 (353)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCcEEEEeCccc-ccC-CcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCH-----
Confidence 776 577899999999876 99999999973 321 111111112 2247899999986 789999999876
Q ss_pred hHHHHHHhhc
Q 016668 334 VELESAINNA 343 (385)
Q Consensus 334 ~~~~~~i~~~ 343 (385)
++.+++...
T Consensus 227 -~~~~~l~~~ 235 (353)
T PRK05387 227 -ELIEALNRV 235 (353)
T ss_pred -HHHHHHHHh
Confidence 677776554
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-15 Score=145.34 Aligned_cols=203 Identities=20% Similarity=0.182 Sum_probs=136.9
Q ss_pred ccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-H
Q 016668 104 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-A 180 (385)
Q Consensus 104 ~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A 180 (385)
-+++-..+|+ +++.+++++...+.. . ..|+.. + ..+++ +.+++++|++.+ +|.+++|+. +
T Consensus 34 ~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~~~----~---~~~lr----~~ia~~~~~~~~----~i~~t~G~~~~ 96 (367)
T PRK02731 34 IIKLASNENPLGPSPKAIEAIRAAADE-L-HRYPDG----S---GFELK----AALAEKFGVDPE----RIILGNGSDEI 96 (367)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHh-h-cCCCCC----c---HHHHH----HHHHHHhCcCHH----HEEEcCCHHHH
Confidence 3555444444 578899988776532 2 234431 1 12444 457778898763 566777765 6
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
+..++.+++++||+|++.+|.|..+.. .....|..+..++ . +++.+|++++++.++. ++|+|+++.+
T Consensus 97 l~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~~~~--~--~~~~~~~~~l~~~~~~-~~~~v~l~~p 163 (367)
T PRK02731 97 LELLARAYLGPGDEVIYSEHGFAVYPI--------AAQAVGAKPVEVP--A--KDYGHDLDAMLAAVTP-RTRLVFIANP 163 (367)
T ss_pred HHHHHHHhcCCCCEEEEecCCHHHHHH--------HHHHcCCeEEEec--c--cCCCCCHHHHHHHhCC-CCcEEEEeCC
Confidence 777788889999999999886643321 1234566544443 4 3568999999998864 7899988877
Q ss_pred CCC--CCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCC---C-CCc-EEEECCCccC--ccccEEEEEEeCC
Q 016668 261 AYP--RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPF---K-YCD-VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 261 ~~~--~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~---~-gaD-iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
+|| ...+.+++.++++.+ |+++++|++|. .+...+....++ + ..+ +++.|++|++ +|.|.|++++++
T Consensus 164 ~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~- 241 (367)
T PRK02731 164 NNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYA-EYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPP- 241 (367)
T ss_pred CCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHH-HhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCH-
Confidence 765 678899999999875 99999999974 333322111112 1 223 6788999985 688899999987
Q ss_pred CCchhHHHHHHhhc
Q 016668 330 PVLGVELESAINNA 343 (385)
Q Consensus 330 ~~~~~~~~~~i~~~ 343 (385)
++.+.+...
T Consensus 242 -----~~~~~l~~~ 250 (367)
T PRK02731 242 -----EIIDALNRV 250 (367)
T ss_pred -----HHHHHHHHc
Confidence 577777654
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-15 Score=145.86 Aligned_cols=232 Identities=14% Similarity=0.105 Sum_probs=150.4
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCC-CCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP 191 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~-~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~p 191 (385)
.+|..|++++...+.+..+.+... ...+...++.+.+++ +++.++++||++. ++.+.+...|||.|+.+++.+++++
T Consensus 2 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~-~~~~l~~l~~~~~-~~~v~~~~gsgT~a~ea~~~nl~~~ 79 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANE-AESDLRELLNIPD-NYEVLFLQGGATGQFAAVPLNLLAE 79 (349)
T ss_pred CCCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHH-HHHHHHHHhCCCC-CceEEEEcCCchHHHHHHHHhcCCC
Confidence 468899999998876533212111 112224455555554 7899999999843 2334455566899999999999999
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEecccc-CCCCCCCHHHHHHHhhhcCCcEEEEcC--CCCCCCCCH
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILFRPKLIIAGA--SAYPRDFDY 268 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~-~~~~~iD~d~le~~i~~~~pklIi~~~--s~~~~~~dl 268 (385)
||++++.. .|.++|.+. +.+...|. +..+..+-. +....+|+++++. + .++++|.+.. +++|...+
T Consensus 80 ~~~~l~i~---~G~fg~r~~---~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~th~ETstGv~~~- 148 (349)
T TIGR01364 80 GKVADYIV---TGAWSKKAA---KEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--S-EDAAYVHYCANETIHGVEFR- 148 (349)
T ss_pred CCeEEEEE---CCHHHHHHH---HHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--C-CCCCEEEEcCCCCcccEecc-
Confidence 99998875 355666542 23445566 555442211 1123577776662 2 3678886643 44555444
Q ss_pred HHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHhhc----
Q 016668 269 PRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA---- 343 (385)
Q Consensus 269 ~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~~~---- 343 (385)
++++.+|+++++|+++++|.. +-.++..|++++|.||+| ||.| |+++.+++ +.++++..
T Consensus 149 ----~l~~~~~~l~iVDavss~g~~-----~id~~~~d~~~~ssqK~l-gP~Glg~l~~s~~------~~~~~~~~~~~~ 212 (349)
T TIGR01364 149 ----ELPDVKNAPLVADMSSNILSR-----PIDVSKFGLIYAGAQKNI-GPAGLTVVIVRKD------LLGRASRITPSM 212 (349)
T ss_pred ----eecccCCCeEEEEccccccCc-----cCCHHHccEEEEeccccc-CCCceEEEEECHH------HHhhcccCCCCc
Confidence 677778999999999987743 233335679999999987 6997 78887774 32222110
Q ss_pred ------c-CCCccCCChHHHHHHHHHHHHHhhCc-hHH
Q 016668 344 ------V-FPGLQGGPHNHTIGGLAVCLKHAQSP-EFK 373 (385)
Q Consensus 344 ------~-fp~~qg~p~~~~iaala~Al~e~~~~-~~~ 373 (385)
. .....++|+.+.+.|+..||+.+.++ ++.
T Consensus 213 ~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e 250 (349)
T TIGR01364 213 LNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVK 250 (349)
T ss_pred chHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 0 01123689999999999999998877 464
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-15 Score=152.34 Aligned_cols=174 Identities=15% Similarity=0.097 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHcC----CCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccc-cCc
Q 016668 148 ELETLCQKRALAAFN----LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTS 221 (385)
Q Consensus 148 ~le~~~~~~la~lfg----~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~-~~g 221 (385)
++++.+++++.+.+| ++++ +|..++|+ .|+..++.++++|||.|++++|.|+++.. .+. ..|
T Consensus 98 ~LR~aiA~~l~~~~g~~v~v~pe----~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~--------~~~~~~G 165 (496)
T PLN02376 98 KFRQAIAHFMGKARGGKVTFDPE----RVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDR--------DLRWRTG 165 (496)
T ss_pred HHHHHHHHHHHHHhCCCCcCChh----hEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHH--------HHHhhCC
Confidence 788888888888887 5553 45666666 59999999999999999999998766532 122 356
Q ss_pred ceEEEEeccccC-CCCCCCHHHHHHHhh-----hcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccc
Q 016668 222 IYFESMPYRLDE-STGLVDYDMLEKTAI-----LFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 222 ~~~~~i~~~~~~-~~~~iD~d~le~~i~-----~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~ 290 (385)
..+. +++++. +++.+|++.+++.++ ..++|+|+++.|+|| ...+ +++|.++|+++|++||+|++| .
T Consensus 166 ~~vv--~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY-~ 242 (496)
T PLN02376 166 VEII--PVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIY-A 242 (496)
T ss_pred CEEE--EEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCc-c
Confidence 5444 444543 345799999976532 136898888888877 3444 677888999999999999997 4
Q ss_pred cccccCc-ccCC--C----C--C--Cc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHh
Q 016668 291 GLVAASV-VADP--F----K--Y--CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 291 Gli~~g~-~~~p--~----~--g--aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
.+++.+. +++. + + + .| +++.|++|.| +|.|.|++++.++ .+.+.+.
T Consensus 243 ~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~-----~l~~~~~ 303 (496)
T PLN02376 243 ATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFND-----SVVSCAR 303 (496)
T ss_pred ccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCH-----HHHHHHH
Confidence 5554332 2221 1 1 1 13 3578999987 7899999999654 5555443
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=147.90 Aligned_cols=220 Identities=21% Similarity=0.210 Sum_probs=139.7
Q ss_pred cHHHHHHHHHHHHHHHHHcCCC------------CCCCcceeecCCcHHHHHHHHHHh----cc----------------
Q 016668 143 NEYIDELETLCQKRALAAFNLD------------ENKWGVNVQPLSGSPANFEVYTAI----LK---------------- 190 (385)
Q Consensus 143 ~~~~~~le~~~~~~la~lfg~~------------~~~~~~~V~~~sGs~A~~~a~~al----l~---------------- 190 (385)
.+...++|+.+.+|++++++.. ...+ -+++++||.||+.++.+. ++
T Consensus 124 spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~--G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~ 201 (522)
T TIGR03799 124 SKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSL--GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA 201 (522)
T ss_pred CcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCC--eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence 3445689999999999998531 1123 345678899999887553 11
Q ss_pred ------CCCEEeecCCCCCccccCCccccccccccCcc---eEEEEeccccCCCCCCCHHHHHHHhhh---cCCcEE--E
Q 016668 191 ------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI---YFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLI--I 256 (385)
Q Consensus 191 ------pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~---~~~~i~~~~~~~~~~iD~d~le~~i~~---~~pklI--i 256 (385)
+++.|++.+. +|.+.. +.+...|. .+..++ +| +++.+|+++|++.+++ .+.+.+ +
T Consensus 202 ~~~~~~~~~~v~~S~~---~H~S~~-----kaa~~lglg~~~v~~vp--~d-~~g~~d~~~L~~~i~~~~~~g~~~~~vv 270 (522)
T TIGR03799 202 LKHYGYDGLAILVSER---GHYSLG-----KAADVLGIGRDNLIAIK--TD-ANNRIDVDALRDKCAELAEQNIKPLAIV 270 (522)
T ss_pred hhhccCCceEEEECCC---chHHHH-----HHHHHcCCCcccEEEEE--eC-CCCcCCHHHHHHHHHHHHHCCCCcEEEE
Confidence 1345666654 343321 23345554 344444 55 4689999999998853 233333 3
Q ss_pred --EcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCccc---CCCCCCcEEEECCCccCccccE-EEEEEeCCC
Q 016668 257 --AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDP 330 (385)
Q Consensus 257 --~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~---~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~ 330 (385)
.+.+.++...|+++|+++|+++|+|+++|+||+.+......+. ..++++|.+++++|||+.+|.| |+++++++
T Consensus 271 ataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~- 349 (522)
T TIGR03799 271 GVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDP- 349 (522)
T ss_pred EEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCH-
Confidence 2344578889999999999999999999999865543222111 1123789999999999999987 88888875
Q ss_pred CchhHHHHHHhhc-c-----------CCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhc
Q 016668 331 VLGVELESAINNA-V-----------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSAC 381 (385)
Q Consensus 331 ~~~~~~~~~i~~~-~-----------fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~ 381 (385)
++.+.+... . ...++++.....+ .+-.+++.+-..+|++..++.++
T Consensus 350 ----~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al-~lw~aL~~lG~~G~~~ii~~~~~ 407 (522)
T TIGR03799 350 ----ALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAM-LVYAGLHIIGRKGYELLIDQSIE 407 (522)
T ss_pred ----HHHHHhccCcchhcCCCCCccccceeecCcchHHH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333221 0 1124455444433 46677777766677655555443
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-15 Score=148.09 Aligned_cols=164 Identities=21% Similarity=0.210 Sum_probs=113.7
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++...+||+ .+++++ .+. .+.+.||+.|+..++.++++|||+|++.++.|+++.... ...+...|
T Consensus 49 ~~p~~~~Le~----~lA~l~-~~~-----~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~----~~~l~~~G 114 (366)
T PRK07582 49 SNPTWRALEA----ALGELE-GAE-----ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALA----REYLAPLG 114 (366)
T ss_pred CCccHHHHHH----HHHHHc-CCC-----EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHH----HHHHhcCe
Confidence 4555667776 466777 222 577899999999999999999999999987665432110 01122346
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+..++ .++ +.+ ... .++|+|+++.+++| ...|+++|.++|+++|+++++|++|.... + .
T Consensus 115 ~~v~~v~--~~~-----~~~---~~~--~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~---~--~ 177 (366)
T PRK07582 115 VTVREAP--TAG-----MAE---AAL--AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPL---G--Q 177 (366)
T ss_pred EEEEEEC--CCC-----hHH---Hhc--cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCcc---c--c
Confidence 5444433 321 111 222 36899999888876 46799999999999999999999985332 1 2
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~ 341 (385)
.|++ ++|++++|+||++.||. +|+++++++ ++.+++.
T Consensus 178 ~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~-----~l~~~l~ 218 (366)
T PRK07582 178 RPLELGADLVVASDTKALTGHSDLLLGYVAGRDP-----ELMAAVE 218 (366)
T ss_pred CchhcCCcEEEecccccccCCCCeeEEEEEcCcH-----HHHHHHH
Confidence 4556 88999999999998865 588888654 5666554
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-15 Score=144.89 Aligned_cols=203 Identities=19% Similarity=0.155 Sum_probs=137.0
Q ss_pred cccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HH
Q 016668 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (385)
Q Consensus 105 l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~ 181 (385)
++|-..++ .+++.+++++...+.. ...||. .|. ++++ +.+++++|++++ +|.+++|+. ++
T Consensus 25 i~l~~~~~~~~~~~~~~~a~~~~~~~--~~~y~~----~g~---~~lr----~~ia~~~~~~~~----~I~~~~G~~~~l 87 (352)
T PRK03321 25 IKLSSNETPFGPLPSVRAAIARAAAG--VNRYPD----MGA---VELR----AALAEHLGVPPE----HVAVGCGSVALC 87 (352)
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHh--cCcCCC----CcH---HHHH----HHHHHHhCcCHH----HEEECCCHHHHH
Confidence 44443333 2577899998876542 223442 132 2444 457788888763 466778876 67
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.++++|||+|+++.|.+..+.. .+...|..+. ++++++ ++.+|++++++.++. ++|+|++..++
T Consensus 88 ~~~~~~~~~~gd~Vli~~p~y~~~~~--------~~~~~g~~~~--~v~~~~-~~~~~~~~l~~~~~~-~~~~v~l~~p~ 155 (352)
T PRK03321 88 QQLVQATAGPGDEVIFAWRSFEAYPI--------LVQVAGATPV--QVPLTP-DHTHDLDAMAAAITD-RTRLIFVCNPN 155 (352)
T ss_pred HHHHHHhcCCCCEEEeCCCCHHHHHH--------HHHHcCCEEE--EccCCC-CCCCCHHHHHHhhcc-CCCEEEEeCCC
Confidence 77778889999999998876543211 2234565444 444543 367899999998865 78998887777
Q ss_pred CC--CCCCHHHHHHHHHH--cCcEEEEeccccccccccCcccCCCC----CCc-EEEECCCccC--ccccEEEEEEeCCC
Q 016668 262 YP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 262 ~~--~~~dl~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~~----gaD-iv~~S~hK~l--~GprgG~I~~~~~~ 330 (385)
|| ...+.++|.++|++ +|+++++|++|. ++...+..+.++. ..+ +++.|++|+| +|.|.|++++++
T Consensus 156 NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~-- 232 (352)
T PRK03321 156 NPTGTVVTPAELARFLDAVPADVLVVLDEAYV-EYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP-- 232 (352)
T ss_pred CCcCCCcCHHHHHHHHHhCCCCeEEEEechHH-HhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH--
Confidence 65 57889999999987 599999999973 4444332222222 223 5788999997 578899999976
Q ss_pred CchhHHHHHHhhc
Q 016668 331 VLGVELESAINNA 343 (385)
Q Consensus 331 ~~~~~~~~~i~~~ 343 (385)
++.+.+...
T Consensus 233 ----~~~~~~~~~ 241 (352)
T PRK03321 233 ----EVIAALRKV 241 (352)
T ss_pred ----HHHHHHHHh
Confidence 677777654
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-15 Score=144.92 Aligned_cols=203 Identities=17% Similarity=0.107 Sum_probs=135.4
Q ss_pred cccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeec-CCcHH-H
Q 016668 105 LELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSP-A 180 (385)
Q Consensus 105 l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~-~sGs~-A 180 (385)
++|-..+|+ ++|.+.+++...+.. . .+|+.. . ..+++ +.+++++|++++ +|.+ ++|+. +
T Consensus 37 i~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~y~~~----~---~~~lr----~~ia~~~~~~~~----~i~~~~~Ga~~~ 99 (361)
T PRK00950 37 IKLGSNENPLGPSPKAVEAIEKELSK-I-HRYPEP----D---APELR----EALSKYTGVPVE----NIIVGGDGMDEV 99 (361)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHh-h-cCCCCC----C---HHHHH----HHHHHHhCCCHH----HEEEeCCCHHHH
Confidence 555444443 578888888765542 1 234431 1 12444 457788898764 4555 67765 7
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
+..++.++++|||+|++.+|.+..+.. .+...|..+..++ .+ +++.+|++++++.+.. ++++|++..+
T Consensus 100 i~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~~~~~~~--~~-~~~~~~~~~l~~~~~~-~~~~v~~~~p 167 (361)
T PRK00950 100 IDTLMRTFIDPGDEVIIPTPTFSYYEI--------SAKAHGAKPVYAK--RE-EDFSLDVDSVLNAITE-KTKVIFLCTP 167 (361)
T ss_pred HHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCEEEEee--cC-CCCCcCHHHHHHHhcc-CCCEEEEeCC
Confidence 777888889999999999886543211 2345566544444 33 3458999999998854 7888888777
Q ss_pred CCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCc--EEEECCCccC--ccccEEEEEEeCCCCchh
Q 016668 261 AYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGV 334 (385)
Q Consensus 261 ~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~ 334 (385)
++| ...+.+++.++|+++|+++++|++|. ++. .+.....++..| +++.|++|++ +|.|.|++++++
T Consensus 168 ~nptG~~~~~~~l~~l~~~~~~~li~De~y~-~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~------ 239 (361)
T PRK00950 168 NNPTGNLIPEEDIRKILESTDALVFVDEAYV-EFA-EYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE------ 239 (361)
T ss_pred CCCCCCCcCHHHHHHHHHHCCcEEEEECchh-hhC-ccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCH------
Confidence 665 67899999999999999999999984 433 111111112223 6788999987 577889999877
Q ss_pred HHHHHHhhcc
Q 016668 335 ELESAINNAV 344 (385)
Q Consensus 335 ~~~~~i~~~~ 344 (385)
++.+.+....
T Consensus 240 ~~~~~~~~~~ 249 (361)
T PRK00950 240 WLIDYYMRAK 249 (361)
T ss_pred HHHHHHHHhc
Confidence 5666665443
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=143.12 Aligned_cols=199 Identities=19% Similarity=0.137 Sum_probs=134.3
Q ss_pred cccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHH
Q 016668 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN 181 (385)
Q Consensus 105 l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~ 181 (385)
+.|-..+| .+++.+++++...+.. . ..|+. ....++++ .+++++|++++ +|.+++|+ +++
T Consensus 46 i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~Y~~-------~~~~~Lr~----aia~~~~v~~e----~I~it~Gs~~ai 108 (370)
T PRK09105 46 VFLNANECPLGPSPAARDAAARSAAL-S-GRYDL-------ELEDDLRT----LFAAQEGLPAD----HVMAYAGSSEPL 108 (370)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHH-h-cCCCC-------chHHHHHH----HHHHHhCcChh----hEEEcCChHHHH
Confidence 34443444 4688999998766532 1 12332 11234444 56778899874 46666665 599
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.++++|||+|++++|.|.++.. .+...|..+..++ .++ ++.+|++++++.. .++|+|+++.++
T Consensus 109 ~~~~~~l~~~gd~Vli~~P~y~~~~~--------~~~~~g~~~~~v~--~~~-~~~~d~~~l~~~~--~~~~~v~l~nP~ 175 (370)
T PRK09105 109 NYAVLAFTSPTAGLVTADPTYEAGWR--------AADAQGAPVAKVP--LRA-DGAHDVKAMLAAD--PNAGLIYICNPN 175 (370)
T ss_pred HHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCCeEEEec--CCC-CCCCCHHHHHhcC--CCCCEEEEeCCC
Confidence 99999999999999999997765422 3345676555444 442 4679999998763 368899888888
Q ss_pred CC--CCCCHHHHHHHHHH--cCcEEEEeccccccccccCcccCCCC----CCc-EEEECCCccC--ccccEEEEEEeCCC
Q 016668 262 YP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 262 ~~--~~~dl~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~~----gaD-iv~~S~hK~l--~GprgG~I~~~~~~ 330 (385)
|| ...+.++|.++++. +|+++|+|++|. .+.. .++..+ +.+ +++.|++|++ +|+|.|++++++
T Consensus 176 NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~-~f~~---~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~-- 249 (370)
T PRK09105 176 NPTGTVTPRADIEWLLANKPAGSVLLVDEAYI-HFSD---APSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP-- 249 (370)
T ss_pred CCCCcCcCHHHHHHHHHhCCCCcEEEEECchH-Hhcc---CcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCH--
Confidence 76 56777888777654 489999999973 3321 122221 345 5678999997 788999999887
Q ss_pred CchhHHHHHHhhc
Q 016668 331 VLGVELESAINNA 343 (385)
Q Consensus 331 ~~~~~~~~~i~~~ 343 (385)
++.+.+...
T Consensus 250 ----~~i~~l~~~ 258 (370)
T PRK09105 250 ----DLLAKLARF 258 (370)
T ss_pred ----HHHHHHHhc
Confidence 577777654
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-14 Score=141.95 Aligned_cols=220 Identities=16% Similarity=0.079 Sum_probs=141.8
Q ss_pred cccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HH
Q 016668 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (385)
Q Consensus 105 l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~ 181 (385)
++|-..++ .+++.+.+++...+... .+|+.. + ..++++ .++++++++.+ +|.+++|+. ++
T Consensus 35 ~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~Y~~~----~---~~~Lr~----~ia~~~~~~~~----~I~it~G~~~~l 97 (369)
T PRK08153 35 ARIGANESGFGPSPSVIAAMREAAAEI--WKYGDP----E---NHDLRH----ALAAHHGVAPE----NIMVGEGIDGLL 97 (369)
T ss_pred eEecCCCCCCCCCHHHHHHHHHHHHHh--hcCCCC----c---cHHHHH----HHHHHhCCCHH----HEEEcCCHHHHH
Confidence 35544443 45889999987654321 234431 1 124554 56677888764 577788876 77
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.++++|||.|++.+|.|.++.. .+...|..+..++ ++ +..+|++++++.+...++|+|+++.++
T Consensus 98 ~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~~~~~vp--~~--~~~~~~~~l~~~~~~~~~~~i~l~~P~ 165 (369)
T PRK08153 98 GLIVRLYVEPGDPVVTSLGAYPTFNY--------HVAGFGGRLVTVP--YR--DDREDLDALLDAARRENAPLVYLANPD 165 (369)
T ss_pred HHHHHHhcCCCCEEEECCCcchHHHH--------HHHHcCCeEEEee--CC--CCCCCHHHHHHHhcccCCcEEEEeCCC
Confidence 77788889999999999986654322 2234566555455 43 235899999887755578999887777
Q ss_pred CC--CCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC--CCc-EEEECCCccC--ccccEEEEEEeCCCCc
Q 016668 262 YP--RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCD-VVTTTTHKSL--RGPRGGMIFFKKDPVL 332 (385)
Q Consensus 262 ~~--~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~--gaD-iv~~S~hK~l--~GprgG~I~~~~~~~~ 332 (385)
|| ...+.+++.++++.. |++||+|+++. .+...+... ++. .-+ +++.|++|++ +|.|.|++++++
T Consensus 166 NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~-~~~~~~~~~-~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~---- 239 (369)
T PRK08153 166 NPMGSWHPAADIVAFIEALPETTLLVLDEAYC-ETAPAGAAP-PIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAP---- 239 (369)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCcEEEEeCchh-hhcCcccch-hhhhcCCCEEEEecchHhccCcchheeeeecCH----
Confidence 76 567777777776654 89999999974 444333222 222 223 6799999997 688999999976
Q ss_pred hhHHHHHHhhccCCCccCCChHHHHHHHHHHH
Q 016668 333 GVELESAINNAVFPGLQGGPHNHTIGGLAVCL 364 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al 364 (385)
++.+.+.....+. +.+....++...++
T Consensus 240 --~~~~~l~~~~~~~---~~s~~~q~~~~~~l 266 (369)
T PRK08153 240 --GTIKAFDKVRNHF---GMNRIAQAAALAAL 266 (369)
T ss_pred --HHHHHHHHhhcCC---CCCHHHHHHHHHHh
Confidence 5666665543221 23444444444444
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=143.45 Aligned_cols=203 Identities=20% Similarity=0.180 Sum_probs=136.8
Q ss_pred cccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHH
Q 016668 105 LELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN 181 (385)
Q Consensus 105 l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~ 181 (385)
++|-..++. +++.+++++...+.. . ..||. .|. .+++ +.++++++++.+ +|.+++|+ +++
T Consensus 32 i~l~~n~~~~~~~~~v~~a~~~~~~~-~-~~~p~----~g~---~~lr----~~ia~~~~~~~~----~i~~t~G~~~~l 94 (359)
T PRK03158 32 VKLASNENPYGPSPKVKEAIAAHLDE-L-ALYPD----GYA---PELR----TKVAKHLGVDEE----QLLFGAGLDEVI 94 (359)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHH-h-hcCCC----CcH---HHHH----HHHHHHhCCCHH----HEEECCCHHHHH
Confidence 455433332 588899988765532 1 12332 122 2444 457777888763 46667766 588
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.+++++||+|++.+|.++++.. .....|..+..++ ++ ++.+|++++++.+++ ++|+|+++.++
T Consensus 95 ~~~~~~~~~~gd~v~~~~p~y~~~~~--------~~~~~g~~~~~~~--~~--~~~~d~~~l~~~~~~-~~~~v~i~~p~ 161 (359)
T PRK03158 95 QMISRALLNPGTNTVMAEPTFSQYRH--------NAIIEGAEVREVP--LK--DGGHDLEAMLKAIDE-QTKIVWICNPN 161 (359)
T ss_pred HHHHHHHhCCCCEEEEcCCCHHHHHH--------HHHHcCCeEEEEe--cC--CCCcCHHHHHHhcCC-CCCEEEEeCCC
Confidence 88888999999999999987755321 2234566555555 43 457899999988754 78998887777
Q ss_pred CC--CCCCHHHHHHHHHH--cCcEEEEeccccccccccCcccCCC---C--CCcEEEECCCccC--ccccEEEEEEeCCC
Q 016668 262 YP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 262 ~~--~~~dl~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~---~--gaDiv~~S~hK~l--~GprgG~I~~~~~~ 330 (385)
|| ...+.++|.++++. +|+++|+|++|. .+...+..+.++ + .-.+++.|++|++ +|.|.|++++++
T Consensus 162 NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~-- 238 (359)
T PRK03158 162 NPTGTYVNHEELLSFLESVPSHVLVVLDEAYY-EYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE-- 238 (359)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCcEEEEECchH-hhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH--
Confidence 76 56788999998887 599999999974 343333222222 1 2237789999997 588999999887
Q ss_pred CchhHHHHHHhhcc
Q 016668 331 VLGVELESAINNAV 344 (385)
Q Consensus 331 ~~~~~~~~~i~~~~ 344 (385)
++.+.+....
T Consensus 239 ----~~~~~~~~~~ 248 (359)
T PRK03158 239 ----ELIEKLNIAR 248 (359)
T ss_pred ----HHHHHHHHhc
Confidence 5777776544
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-14 Score=142.80 Aligned_cols=204 Identities=13% Similarity=0.073 Sum_probs=134.4
Q ss_pred CCCcHHHHHHHhhHhhccC-CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC----CCCCCCcceeecCCcHH-HHHHHH
Q 016668 112 NFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENKWGVNVQPLSGSP-ANFEVY 185 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y-~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg----~~~~~~~~~V~~~sGs~-A~~~a~ 185 (385)
-.+++.+++++.+.+.... ..+||. .|.+ +|++..++++.+.+| ++.+ +|.+++|+. ++..++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~Y~~----~G~~---~Lr~aia~~~~~~~~~~~~v~~~----~I~it~Ga~~al~~~~ 108 (374)
T PRK02610 40 YDLPPDLKQKLAWLYQQGIESNRYPD----GGHE---ALKQAIAEYVNESAAGSSQITPA----NISVGNGSDELIRSLL 108 (374)
T ss_pred CCCCHHHHHHHHHHHhhcccccCCCC----CchH---HHHHHHHHHhCccccccCCCCHH----HEEEcCChHHHHHHHH
Confidence 3468899999887655422 224543 2433 666655555555442 4443 577788875 877778
Q ss_pred HHhccCCC-EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh---cCCcEEEEcCCC
Q 016668 186 TAILKPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASA 261 (385)
Q Consensus 186 ~all~pGD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~---~~pklIi~~~s~ 261 (385)
.+++.+|| +|++.+|.|.++.. .+...|..+. +++++++++.+|++++++.++. .++|+|++++++
T Consensus 109 ~~~~~~g~~~Vlv~~P~y~~~~~--------~~~~~g~~~~--~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~ 178 (374)
T PRK02610 109 IATCLGGEGSILVAEPTFSMYGI--------LAQTLGIPVV--RVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPN 178 (374)
T ss_pred HHHcCCCCCeEEEcCCChHHHHH--------HHHHcCCEEE--EecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCC
Confidence 88888886 89999987755422 3356676544 4445544578999999998864 578999888888
Q ss_pred CC--CCCCHHHHHHHHHH-cCcEEEEeccccccccccCcccCCCC-CCc-EEEECCCccC--ccccEEEEEEeCCCCchh
Q 016668 262 YP--RDFDYPRMRQIADA-VGALLMMDMAHISGLVAASVVADPFK-YCD-VVTTTTHKSL--RGPRGGMIFFKKDPVLGV 334 (385)
Q Consensus 262 ~~--~~~dl~~I~~ia~~-~ga~livD~ah~~Gli~~g~~~~p~~-gaD-iv~~S~hK~l--~GprgG~I~~~~~~~~~~ 334 (385)
|| ...+.+++.++++- ++++||+|+++. .+.... ....+. .-. +++.|++|++ +|.|.|++++++
T Consensus 179 NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~-~~~~~~-~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~------ 250 (374)
T PRK02610 179 SPTGNPLTAAELEWLRSLPEDILVVIDEAYF-EFSQTT-LVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHP------ 250 (374)
T ss_pred CCCCCCCCHHHHHHHHhccCCcEEEEecccc-ccCccc-hHHHHhcCCCEEEEEecchhccCcccceeeeecCH------
Confidence 87 45565565555432 489999999973 332211 111122 222 6789999997 789999999876
Q ss_pred HHHHHHhhcc
Q 016668 335 ELESAINNAV 344 (385)
Q Consensus 335 ~~~~~i~~~~ 344 (385)
++.+.+....
T Consensus 251 ~l~~~l~~~~ 260 (374)
T PRK02610 251 ELIAVLEKVR 260 (374)
T ss_pred HHHHHHHHhc
Confidence 6777776544
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=144.09 Aligned_cols=203 Identities=18% Similarity=0.177 Sum_probs=136.8
Q ss_pred ccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HH
Q 016668 104 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA 180 (385)
Q Consensus 104 ~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A 180 (385)
.+.|-..||. +++.+++++.+.+.+. ..||. .|.+ +++ +.+++++|++.+ +|.+++|+ ++
T Consensus 31 ~i~l~~nen~~~~~~~v~~a~~~~~~~~--~~Yp~----~g~~---~Lr----~aia~~~~~~~~----~I~vt~Gs~e~ 93 (366)
T PRK01533 31 FVKLASNENPFGCSPRVLDELQKSWLDH--ALYPD----GGAT---TLR----QTIANKLHVKME----QVLCGSGLDEV 93 (366)
T ss_pred eEEeCCCCCCCCCCHHHHHHHHHHHHhc--CcCCC----CCHH---HHH----HHHHHHhCCCcc----eEEECCCHHHH
Confidence 3566555555 6889999988765432 12443 1322 444 456777899874 56677776 58
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
+..++.++++|||+|++.+|.+.++.. .+...|..+..++ ++ ++.+|++++++.+++ ++|+|+++.+
T Consensus 94 i~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~~v~~v~--~~--~~~~d~~~l~~~~~~-~~~~v~i~~P 160 (366)
T PRK01533 94 IQIISRAVLKAGDNIVTAGATFPQYRH--------HAIIEGCEVKEVA--LN--NGVYDLDEISSVVDN-DTKIVWICNP 160 (366)
T ss_pred HHHHHHHhcCCCCEEEEcCCcHHHHHH--------HHHHcCCEEEEee--cC--CCCcCHHHHHHHhCc-CCcEEEEeCC
Confidence 899999999999999999987655432 2345676555554 43 356999999998854 7899988888
Q ss_pred CCC--CCCCHHHHHHHH---HHcCcEEEEeccccccccccCcccCCC---CCCc--EEEECCCccC--ccccEEEEEEeC
Q 016668 261 AYP--RDFDYPRMRQIA---DAVGALLMMDMAHISGLVAASVVADPF---KYCD--VVTTTTHKSL--RGPRGGMIFFKK 328 (385)
Q Consensus 261 ~~~--~~~dl~~I~~ia---~~~ga~livD~ah~~Gli~~g~~~~p~---~gaD--iv~~S~hK~l--~GprgG~I~~~~ 328 (385)
+|| ...+.+++.+++ ++++ ++++|+++. .+...+..++.+ +..+ +++.|++|++ +|.|.|++++++
T Consensus 161 ~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~ 238 (366)
T PRK01533 161 NNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYY-EYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHE 238 (366)
T ss_pred CCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHH-HhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCH
Confidence 876 456666555555 4444 677899974 554332222222 2122 7889999996 788999999876
Q ss_pred CCCchhHHHHHHhhcc
Q 016668 329 DPVLGVELESAINNAV 344 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~ 344 (385)
++.+.+....
T Consensus 239 ------~~~~~l~~~~ 248 (366)
T PRK01533 239 ------ELIEKLNVVR 248 (366)
T ss_pred ------HHHHHHHHhc
Confidence 6777776544
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-14 Score=148.26 Aligned_cols=215 Identities=15% Similarity=0.106 Sum_probs=139.6
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccC---CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA 180 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y---~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A 180 (385)
|++-+.+...|..+++.....+.+.. ..+|.. ..|.+ ++++..++++.+..|.+.+ + -+|..++|+ +|
T Consensus 132 i~~~~~~~~fp~~~i~~a~~~l~~~~~~~~~~Y~~---s~G~~---~lReaIA~~~~~r~g~~~~-p-e~I~iT~Ga~~a 203 (534)
T PLN02231 132 LDKSETHGLFSADAIERAWQILDQIPGRATGAYSH---SQGIK---GLRDAIAAGIEARDGFPAD-P-NDIFLTDGASPA 203 (534)
T ss_pred CCCCCccccCCHHHHHHHHHHHHhcCCccccCcCC---CCCcH---HHHHHHHHHHHhccCCCCC-c-ccEEEeCCHHHH
Confidence 34433333345566666555554422 122433 23544 7888888888887776431 2 256667765 59
Q ss_pred HHHHHHHhcc-CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhc-----CCc
Q 016668 181 NFEVYTAILK-PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPK 253 (385)
Q Consensus 181 ~~~a~~all~-pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~-----~pk 253 (385)
+..++.++++ +||.|+++.|.|..+.. .+...|.. .++++++++ ++.+|+++|++.++.. ++|
T Consensus 204 i~~~~~~l~~~~gd~Vli~~P~Y~~y~~--------~~~~~g~~--~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k 273 (534)
T PLN02231 204 VHMMMQLLIRSEKDGILCPIPQYPLYSA--------SIALHGGT--LVPYYLDEATGWGLEISELKKQLEDARSKGITVR 273 (534)
T ss_pred HHHHHHHhccCCCCEEEEeCCCChhHHH--------HHHHcCCE--EEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeE
Confidence 9999999984 89999999998765532 33456654 445556644 3589999999988642 578
Q ss_pred EEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEecccccccccc-Cc-ccCC--C------CCCc---EEEECCCcc
Q 016668 254 LIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VADP--F------KYCD---VVTTTTHKS 315 (385)
Q Consensus 254 lIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~-~~~p--~------~gaD---iv~~S~hK~ 315 (385)
+|++..++||+ .. .+++|.++|+++|++||+|+++ ..+++. +. +++. + ..-| +++.|++|.
T Consensus 274 ~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY-~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~ 352 (534)
T PLN02231 274 ALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVY-QENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKG 352 (534)
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccc-hhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcc
Confidence 88777777773 33 4788999999999999999996 455553 22 2111 1 0112 457899997
Q ss_pred C---ccccEEEEEEe--CCCCchhHHHHHHhhc
Q 016668 316 L---RGPRGGMIFFK--KDPVLGVELESAINNA 343 (385)
Q Consensus 316 l---~GprgG~I~~~--~~~~~~~~~~~~i~~~ 343 (385)
+ +|+|+||+... ++ ++.+.+...
T Consensus 353 ~~g~pGlRiGy~~~~~~~~-----~l~~~l~k~ 380 (534)
T PLN02231 353 YYGECGKRGGYMEVTGFTS-----DVREQIYKV 380 (534)
T ss_pred cccCCccceEEEEEecCCH-----HHHHHHHHH
Confidence 5 59999999763 32 566666443
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-14 Score=141.03 Aligned_cols=225 Identities=16% Similarity=0.097 Sum_probs=142.1
Q ss_pred hhhhcccCChHHHHHHHHHHHHh-hhccccccCC--CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQ-FKSLELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~-~~~l~Liase--n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
+++++...++..+..+....... ...++|-.++ ...++.+++++...... .+|+. ..|.+ ++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~---~~Y~~---~~G~~---~lr~~ia~ 73 (364)
T PRK07865 3 VSARLPDFPWDTLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAADA---PGYPT---TAGTP---ELREAIVG 73 (364)
T ss_pred ccccCCCccHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHhh---CCCCC---ccCCH---HHHHHHHH
Confidence 35677788887776665443332 2335554332 33367888887654321 13443 23444 67777788
Q ss_pred HHHHHcCCC-CCCCcceeecCCcHH-HHHHHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 156 RALAAFNLD-ENKWGVNVQPLSGSP-ANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 156 ~la~lfg~~-~~~~~~~V~~~sGs~-A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
++.+.+|.+ .+ . -+|.+++|+. |+..++..+ ++|||+|++.+|.|.++.. .+...|.. ++.++
T Consensus 74 ~l~~~~~~~~~~-~-~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~--~~~~~-- 139 (364)
T PRK07865 74 WLARRRGVTGLD-P-AAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEV--------GARLAGAT--VVRAD-- 139 (364)
T ss_pred HHHHHcCCCCCC-c-ccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHH--------HHHhcCCE--EEecC--
Confidence 888887754 21 1 2567777765 777777777 7999999999987655422 23445653 33321
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----
Q 016668 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---- 303 (385)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~---- 303 (385)
+++++++ .++|+|+++.++||+ .++ +++|.++|+++|++||+|++|. .+...+.....+.
T Consensus 140 ------~~~~l~~----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~ 208 (364)
T PRK07865 140 ------SLTELGP----QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYL-ELGWDAEPVSILDPRVC 208 (364)
T ss_pred ------ChhhCCc----ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-hhccCCCCCcccccccc
Confidence 2233322 468999888777773 334 6788899999999999999974 4444332222221
Q ss_pred C--Cc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 304 Y--CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 304 g--aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+ .+ +++.|++|.+ +|.|.|++++++ ++.+++...
T Consensus 209 ~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~------~~~~~~~~~ 248 (364)
T PRK07865 209 GGDHTGLLAVHSLSKQSNLAGYRAGFVAGDP------ALVAELLEV 248 (364)
T ss_pred CCccceEEEEeechhccCCCceeeEEEecCH------HHHHHHHHH
Confidence 1 12 7899999986 688999999876 566666543
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=158.78 Aligned_cols=197 Identities=16% Similarity=0.091 Sum_probs=140.5
Q ss_pred HHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecc
Q 016668 152 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (385)
Q Consensus 152 ~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~ 230 (385)
.+++.++++||++.. .+.++|| .+|.++++++++|||+||+.. ++|.|.- ..+.+.|+...++.-.
T Consensus 199 eAe~~AA~~fgAd~t-----yfvvNGTS~~n~av~~a~~~~Gd~VLvdR---N~HKSv~-----haLilsga~PVYl~P~ 265 (714)
T PRK15400 199 EAEEYIARVFNADRS-----YMVTNGTSTANKIVGMYSAPAGSTVLIDR---NCHKSLT-----HLMMMSDVTPIYFRPT 265 (714)
T ss_pred HHHHHHHHHhCCCcE-----EEEeCchHHHHHHHHHHhcCCCCEEEeec---ccHHHHH-----HHHHHcCCeEEEeccc
Confidence 467789999999984 3456675 599999999999999999876 4665521 1455777754444322
Q ss_pred ccCCCC---CCC-----HHHHHHHhhhc----CCc-EEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCc
Q 016668 231 LDESTG---LVD-----YDMLEKTAILF----RPK-LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV 297 (385)
Q Consensus 231 ~~~~~~---~iD-----~d~le~~i~~~----~pk-lIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~ 297 (385)
.+ ..| .|+ .+.+++.++++ +|+ +|+++++.+|...|+++|.++|+.++ |++|+||+..+.+...
T Consensus 266 rn-~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~ 342 (714)
T PRK15400 266 RN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (714)
T ss_pred cc-ccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence 22 222 345 89999988653 232 44555666789999999999999887 7899999877665544
Q ss_pred cc--CCCC-CC---c--EEEECCCccCccc-cEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhh
Q 016668 298 VA--DPFK-YC---D--VVTTTTHKSLRGP-RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 298 ~~--~p~~-ga---D--iv~~S~hK~l~Gp-rgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
++ +++. ++ | +++.|+||+|++. ++++|..+.. + + .++++.+.......+|+...+|++.+|.+.+.
T Consensus 343 ~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-v---d-~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~ 417 (714)
T PRK15400 343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-V---N-EETFNEAYMMHTTTSPHYGIVASTETAAAMMK 417 (714)
T ss_pred cCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC-C---C-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 43 5554 66 5 8999999999987 4567766553 1 2 35666654444457899999999999998776
Q ss_pred C
Q 016668 369 S 369 (385)
Q Consensus 369 ~ 369 (385)
.
T Consensus 418 ~ 418 (714)
T PRK15400 418 G 418 (714)
T ss_pred h
Confidence 4
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-14 Score=138.85 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=129.7
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceeecCCcHH-HHHHHHHHhc
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGSP-ANFEVYTAIL 189 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~--~~~~~~~~V~~~sGs~-A~~~a~~all 189 (385)
.+++.+.+++..... . ...|+. ..|.. ++++..++++.+.+|. +.+ +|..++|+. |+..++.+++
T Consensus 37 ~~~~~~~~a~~~~~~-~-~~~Y~~---~~G~~---~lr~aia~~l~~~~g~~~~~~----~I~it~G~~~al~~~~~~~~ 104 (374)
T PRK05839 37 ETPKFIQDALKNNAH-L-LNKYPK---SAGEE---SLREAQRGFFKRRFKIELKEN----ELIPTFGTREVLFNFPQFVL 104 (374)
T ss_pred CCCHHHHHHHHHHhh-c-cCCCCC---CCCCH---HHHHHHHHHHHHHhCCCCCcc----eEEEecCcHHHHHHHHHHHh
Confidence 457888888775432 1 224543 22443 6777777888888884 443 677888875 7777777764
Q ss_pred --cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--
Q 016668 190 --KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR-- 264 (385)
Q Consensus 190 --~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~-- 264 (385)
++||.|++++|.+..+.. .+...|..+. +++.+.+ .+.+|.++.+ + .++|+|+++.++||+
T Consensus 105 ~~~~gd~vlv~~P~y~~~~~--------~~~~~g~~v~--~v~~~~~~~~~~d~~~~~--~--~~~k~v~i~nP~NPTG~ 170 (374)
T PRK05839 105 FDKQNPTIAYPNPFYQIYEG--------AAIASRAKVL--LMPLTKENDFTPSLNEKE--L--QEVDLVILNSPNNPTGR 170 (374)
T ss_pred cCCCCCEEEECCCCchhhHH--------HHHhcCCEEE--EeecccccCCcCCcchhh--h--ccccEEEEeCCCCCcCc
Confidence 589999999987654422 2345666444 4445533 3466665432 2 268999888888873
Q ss_pred CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--------CCc--EEEECCCccC--ccccEEEEEEeCC
Q 016668 265 DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--------YCD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 265 ~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--------gaD--iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
.. .+++|.++|+++|++||+|+++. .+...+..++.+. ..| +++.|++|++ +|.|.|++++++
T Consensus 171 ~~s~~~l~~i~~~~~~~~~~ii~DE~Y~-~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~- 248 (374)
T PRK05839 171 TLSLEELIEWVKLALKHDFILINDECYS-EIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDA- 248 (374)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEeccchh-hcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCH-
Confidence 33 46778888999999999999964 4432222222111 112 6789999974 889999999976
Q ss_pred CCchhHHHHHHhhc
Q 016668 330 PVLGVELESAINNA 343 (385)
Q Consensus 330 ~~~~~~~~~~i~~~ 343 (385)
++.+++...
T Consensus 249 -----~~~~~~~~~ 257 (374)
T PRK05839 249 -----SILKKYKAY 257 (374)
T ss_pred -----HHHHHHHHH
Confidence 576766544
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=147.08 Aligned_cols=205 Identities=17% Similarity=0.135 Sum_probs=137.0
Q ss_pred ccccccCCCCCcHHHHHHHhhHhhc----cC--------CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC----CCCCC
Q 016668 104 SLELIASENFTSRAVMEAVGSCLTN----KY--------SEGLPGKRYYGGNEYIDELETLCQKRALAAFN----LDENK 167 (385)
Q Consensus 104 ~l~Liasen~~s~~V~~al~s~l~~----~y--------~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg----~~~~~ 167 (385)
.|+|-..||..+..+++.......+ .+ ...|+. +.|.+ +|++.+++++.+.+| ++++
T Consensus 40 ~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~---~~G~~---~LR~aiA~~l~~~~~~~~~v~~~- 112 (468)
T PLN02450 40 IIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQD---YHGLP---AFKNALAEFMSEIRGNKVTFDPN- 112 (468)
T ss_pred eEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCC---CCChH---HHHHHHHHHHHHhhCCCCCcChH-
Confidence 3677778887766655554433211 00 011332 33544 688878888888777 3442
Q ss_pred CcceeecCCcHH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccc-cCcceEEEEeccccC-CCCCCCHHHHH
Q 016668 168 WGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSIYFESMPYRLDE-STGLVDYDMLE 244 (385)
Q Consensus 168 ~~~~V~~~sGs~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~-~~g~~~~~i~~~~~~-~~~~iD~d~le 244 (385)
+|.+++|+. ++..++.++++|||.|++++|.|.++.. .+. ..|.. +++++.++ +...+|+++++
T Consensus 113 ---~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~--------~~~~~~g~~--~v~v~~~~~~~~~~~~~~le 179 (468)
T PLN02450 113 ---KLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDR--------DLKWRTGVE--IVPIHCSSSNGFQITESALE 179 (468)
T ss_pred ---HeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHH--------HHhhcCCcE--EEEEecCCccCCcCCHHHHH
Confidence 567778765 9999999999999999999997765421 222 35654 44544543 34578999999
Q ss_pred HHhhh-----cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCc-ccCCCC----------
Q 016668 245 KTAIL-----FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK---------- 303 (385)
Q Consensus 245 ~~i~~-----~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p~~---------- 303 (385)
+.++. .++|+|+++.|+||+ .. .+++|.++|+++|++||+|+++ .++.+.+. +.+.+.
T Consensus 180 ~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y-~~~~f~~~~~~s~l~~~~~~~~~~~ 258 (468)
T PLN02450 180 EAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIY-SGTVFDSPGFVSVMEVLKDRKLENT 258 (468)
T ss_pred HHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccc-cccccCCCCcccHHHHhhhcccccC
Confidence 88754 368988888888874 33 3678889999999999999996 45444332 222111
Q ss_pred -CCc--EEEECCCccC--ccccEEEEEEeCC
Q 016668 304 -YCD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 304 -gaD--iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
..+ +++.|++|.| +|.|.|+++++++
T Consensus 259 ~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~ 289 (468)
T PLN02450 259 DVSNRVHIVYSLSKDLGLPGFRVGAIYSNDE 289 (468)
T ss_pred CCCCcEEEEEeccccCCCCCccEEEEEECCH
Confidence 112 5789999986 7999999999864
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=148.52 Aligned_cols=199 Identities=15% Similarity=0.077 Sum_probs=129.1
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHH-HHHHHcCCCCCCC-cceeecCCcH-HHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK-RALAAFNLDENKW-GVNVQPLSGS-PANFEVY 185 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~-~la~lfg~~~~~~-~~~V~~~sGs-~A~~~a~ 185 (385)
-++..+++.|.++......+ .||.. .|.. ++.+.+.+ .+.+.++...... ..+|..++|+ +|+..++
T Consensus 109 ~p~~~~~~~v~e~~~~~~~~----~Y~~~---~g~~---~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~ 178 (527)
T PRK09275 109 QLGFDADEFVYELVDGIIGD----NYPVP---DRML---KHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIF 178 (527)
T ss_pred CCCCCCCHHHHHHHHHHhcC----CCCCC---CCCH---HHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHH
Confidence 44556678888855444322 25542 2443 45544444 4444333321100 0256667765 5888888
Q ss_pred HH-----hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 186 TA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 186 ~a-----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
.+ +++|||+|++++|.+..+.. .+.+.|..++.++++.+++ ++.+|.++++++++. ++|+|++++
T Consensus 179 ~aL~~~~ll~pGD~Vlv~~P~y~~Y~~--------~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~-~tkai~l~n 249 (527)
T PRK09275 179 DSLKENGLLKAGDKIALMTPIFTPYLE--------IPELPRYDLEVVHINADEENEWQYPDSELEKLRDP-SIKALFLVN 249 (527)
T ss_pred HHHhhhhcCCCCCEEEEeCCChHHHHH--------HHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC-CCCEEEEeC
Confidence 76 68999999999997655432 2334555556667666543 468999999998754 799999888
Q ss_pred CCCCC--CCC---HHHHHHHHHH--cCcEEEEeccccccccccCcccCCCC-CCc--EEEECCCccC--ccccEEEEEEe
Q 016668 260 SAYPR--DFD---YPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCD--VVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 260 s~~~~--~~d---l~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~~-gaD--iv~~S~hK~l--~GprgG~I~~~ 327 (385)
|+||+ ..+ +++|+++|++ ++++||+|+++. .+.. .+.+.+. ..+ +++.|++|++ +|+|.|+++++
T Consensus 250 P~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~-~f~~--~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~ 326 (527)
T PRK09275 250 PSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG-TFVD--DFRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALH 326 (527)
T ss_pred CcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCCh-hhcc--cccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcC
Confidence 88873 444 7788888964 599999999974 3432 1222222 122 7889999997 89999999998
Q ss_pred CC
Q 016668 328 KD 329 (385)
Q Consensus 328 ~~ 329 (385)
++
T Consensus 327 ~~ 328 (527)
T PRK09275 327 ED 328 (527)
T ss_pred ch
Confidence 75
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-14 Score=142.22 Aligned_cols=193 Identities=17% Similarity=0.222 Sum_probs=123.8
Q ss_pred HHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceeecCCcH-HHHHHHHHHh--cc
Q 016668 116 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGS-PANFEVYTAI--LK 190 (385)
Q Consensus 116 ~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~--~~~~~~~~V~~~sGs-~A~~~a~~al--l~ 190 (385)
+.+.+++...+......+|+. ..|.+ ++++..++++.+..+. +.++ +.|..|+|+ +|+..++.++ ++
T Consensus 47 ~~l~~a~~~~~~~~~~~~Y~~---~~G~~---~lR~aia~~~~~~~~~~~~~~~--i~v~iT~Ga~~al~~~~~~l~~~~ 118 (396)
T PRK09257 47 RAVKKAEARLLETETTKNYLP---IEGLA---AYRQAVQELLFGADSPALAAGR--VATVQTPGGTGALRVGADFLKRAF 118 (396)
T ss_pred HHHHHHHHHhcccccCCCcCC---CCCCH---HHHHHHHHHhcCCCCcccccCe--EEEEecCCccHHHHHHHHHHHHhC
Confidence 678888776543322223443 34655 6777667776554432 3321 123566665 5888887655 58
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCC--cEEEEcCCCCCC--CC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP--KLIIAGASAYPR--DF 266 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~p--klIi~~~s~~~~--~~ 266 (385)
|||+|++.+|.|.++.. .+...|..+..+++. +++++.+|++++++.++..++ +++++++++||+ ..
T Consensus 119 pGd~Vlv~~P~y~~~~~--------~~~~~g~~~v~v~~~-~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~ 189 (396)
T PRK09257 119 PDAKVWVSDPTWPNHRA--------IFEAAGLEVKTYPYY-DAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADL 189 (396)
T ss_pred CCCeEEECCCCcccHHH--------HHHHcCCcEEEEecc-ccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC
Confidence 99999999997765532 345667655555431 334568999999988764333 455567778874 33
Q ss_pred ---CHHHHHHHHHHcCcEEEEecccccccccc-Cc-ccC--CCC-CC-c-EEEECCCccC--ccccEEEEEE
Q 016668 267 ---DYPRMRQIADAVGALLMMDMAHISGLVAA-SV-VAD--PFK-YC-D-VVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 267 ---dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~-~~~--p~~-ga-D-iv~~S~hK~l--~GprgG~I~~ 326 (385)
.+++|.++|+++|+++|+|+++ .++... +. .+. .+. .. . +++.|++|++ +|+|.||++.
T Consensus 190 s~~~~~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~ 260 (396)
T PRK09257 190 TPEQWDELAELLKERGLIPFLDIAY-QGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSV 260 (396)
T ss_pred CHHHHHHHHHHHHhCCcEEEEeccc-cccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEE
Confidence 3788899999999999999996 455432 11 111 111 12 2 6789999997 4899999874
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=152.99 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=137.4
Q ss_pred HHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecc
Q 016668 152 LCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (385)
Q Consensus 152 ~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~ 230 (385)
.+++.++++||++.. .+.++|| .+|.++++++++|||+|++.. ++|.|.- ..+.+.|+...+++-.
T Consensus 199 eAe~~aA~~fgAd~t-----yfvvNGTS~~n~av~~a~~~~Gd~VLvdR---N~HKSv~-----~aLilsga~PVYl~P~ 265 (713)
T PRK15399 199 EAEEYIARTFGAEQS-----YIVTNGTSTSNKIVGMYAAPAGSTLLIDR---NCHKSLA-----HLLMMSDVVPIWLKPT 265 (713)
T ss_pred HHHHHHHHHhCCCcE-----EEEeCChHHHHHHHHHHhcCCCCEEEeec---ccHHHHH-----HHHHHcCCeeEEeccc
Confidence 467789999999984 3456675 599999999999999999876 4665521 1455777754444322
Q ss_pred ccCCCC---CCCH-----HHHHHHhhhc----CCcEEEE-cCCCCCCCCCHHHHHHHHHHcCcEE-EEeccccccccccC
Q 016668 231 LDESTG---LVDY-----DMLEKTAILF----RPKLIIA-GASAYPRDFDYPRMRQIADAVGALL-MMDMAHISGLVAAS 296 (385)
Q Consensus 231 ~~~~~~---~iD~-----d~le~~i~~~----~pklIi~-~~s~~~~~~dl~~I~~ia~~~ga~l-ivD~ah~~Gli~~g 296 (385)
.+ ..| .|+. +.+++.++++ +|+.+++ +++.+|...|+++|.++| |+.+ ++|+||++...+..
T Consensus 266 ~n-~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p 341 (713)
T PRK15399 266 RN-ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHP 341 (713)
T ss_pred cc-ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCc
Confidence 22 222 3555 8888888642 3455555 455568899999999998 6666 69999987665544
Q ss_pred ccc--CCCC---CCcEE---EECCCccCccc-cEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHh
Q 016668 297 VVA--DPFK---YCDVV---TTTTHKSLRGP-RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 297 ~~~--~p~~---gaDiv---~~S~hK~l~Gp-rgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~ 367 (385)
.++ +++. ++|.+ +.|+||+|++. ++.+|..+.. + + .++++.+.......+|+...+|++.+|.+.|
T Consensus 342 ~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~-v---d-~~~~n~a~~m~~STSPsY~LmASLD~a~~~m 416 (713)
T PRK15399 342 IYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGE-Y---D-EETFNEAFMMHTSTSPSYPIVASVETAAAML 416 (713)
T ss_pred ccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCC-C---C-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 332 4443 47866 99999999997 5678877653 1 2 3566665444445789999999999999887
Q ss_pred hC
Q 016668 368 QS 369 (385)
Q Consensus 368 ~~ 369 (385)
..
T Consensus 417 ~~ 418 (713)
T PRK15399 417 RG 418 (713)
T ss_pred Hh
Confidence 64
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.1e-14 Score=142.49 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=111.5
Q ss_pred HHHHHHHHcCCCCCCCcceeecCC-cHHHHHHHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~s-Gs~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~ 230 (385)
.++++++++|++.+ ++.+++ |+.++.+++.++ +++||+|+++++.|+++..... ......|..+..++
T Consensus 117 ~~~~la~l~g~~~~----~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~----~~~~~~G~~~~~v~-- 186 (447)
T PRK00451 117 YQTMICELTGMDVA----NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLK----TYLKGQGIEVVEVP-- 186 (447)
T ss_pred HHHHHHHHhCCCcc----eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHH----HHHHhCCcEEEEec--
Confidence 45688999999874 454455 555777888887 4899999999876654422100 01122465555444
Q ss_pred ccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEE--eccccccccccCcccCCCC-CCc
Q 016668 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMM--DMAHISGLVAASVVADPFK-YCD 306 (385)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~~~~dl~~I~~ia~~~ga~liv--D~ah~~Gli~~g~~~~p~~-gaD 306 (385)
+++ + .+|++++++.+++ ++++|+++.++ +|...|+++|.++|+++|+++++ |.. ..|.. ..+.+ ++|
T Consensus 187 ~~~-~-~~d~~~l~~~i~~-~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~-----~~~~~~~~D 257 (447)
T PRK00451 187 YED-G-VTDLEALEAAVDD-DTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLL-----KPPGEYGAD 257 (447)
T ss_pred CCC-C-CCCHHHHHHhcCC-CeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccC-----CCcccCCCC
Confidence 553 3 8999999999865 68888776553 46778999999999999999998 533 23322 22334 899
Q ss_pred EEEECCCcc-----CccccEEEEEEeCC
Q 016668 307 VVTTTTHKS-----LRGPRGGMIFFKKD 329 (385)
Q Consensus 307 iv~~S~hK~-----l~GprgG~I~~~~~ 329 (385)
++++|.||+ ++||+.|+++++++
T Consensus 258 ~~~~s~~k~~~~~~~~Gpg~G~l~~~~~ 285 (447)
T PRK00451 258 IVVGEGQPLGIPLSFGGPYLGFFATRKK 285 (447)
T ss_pred EEEECCCcCCCCCCCCCCCchHHHhhHH
Confidence 999999986 68898899988774
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-15 Score=141.88 Aligned_cols=167 Identities=22% Similarity=0.205 Sum_probs=128.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcc
Q 016668 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (385)
Q Consensus 132 ~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (385)
.||.+.|. +|+..+.+|+ |++.+-|--. .+.+.||..|...++..++++||.|+..+--|||... .+
T Consensus 52 ~G~iYsRi--~NPT~~vlE~----RiAaLEGG~a-----a~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~--lf 118 (426)
T COG2873 52 PGNIYTRI--MNPTTDVLEE----RIAALEGGVA-----ALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYN--LF 118 (426)
T ss_pred CCceeeec--cCchHHHHHH----HHHHhhcchh-----hhhhccchHHHHHHHHHhccCCCeeEeeccccCchHH--HH
Confidence 37777765 7888898886 6788877654 3567899999999999999999999999888887532 11
Q ss_pred ccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccc
Q 016668 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHI 289 (385)
Q Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~ 289 (385)
. ..+...|..+.++ | ..|++.+++.+++ ++|+|++..-.|| ...|+++|.++||++|+.+++|++-+
T Consensus 119 ~--~tl~~~Gi~v~fv----d----~~d~~~~~~aI~~-nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~a 187 (426)
T COG2873 119 S--HTLKRLGIEVRFV----D----PDDPENFEAAIDE-NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFA 187 (426)
T ss_pred H--HHHHhcCcEEEEe----C----CCCHHHHHHHhCc-ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCC
Confidence 1 1234566644433 2 2479999999976 8999999877777 46799999999999999999999854
Q ss_pred ccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEe
Q 016668 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFK 327 (385)
Q Consensus 290 ~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~ 327 (385)
.. .+..|++ |+|||+.|++|++.|.- ||+|+-.
T Consensus 188 tp-----yl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~ 224 (426)
T COG2873 188 TP-----YLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDG 224 (426)
T ss_pred cc-----eecchhhcCCCEEEEeecccccCCccccceEEEeC
Confidence 33 3447888 99999999999997742 4555543
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=140.65 Aligned_cols=204 Identities=20% Similarity=0.185 Sum_probs=134.9
Q ss_pred cccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HH
Q 016668 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (385)
Q Consensus 105 l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~ 181 (385)
++|-..+| .+++.+.+++...... ...|+. ..| +.++ +.+++++|++.+ +|.+++|+. ++
T Consensus 39 i~l~~~~~~~~~~~~~~~al~~~~~~--~~~Y~~---~~g----~~lr----~~ia~~~~~~~~----~i~~t~G~~~~l 101 (371)
T PRK05166 39 AKLGSNENPLGPSPAVRRAFADIAEL--LRLYPD---PQG----RALR----EAIAARTGVPAD----RIILGNGSEDLI 101 (371)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHH--hhcCCC---CcH----HHHH----HHHHHHhCcCHH----HEEEcCCHHHHH
Confidence 44544433 4688888888754322 123443 112 1343 456778898763 566777764 88
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.++++|||+|++.+|.|.++.. .+...|..+..++ ++ +++.+|++++++.++. ++|+|++..++
T Consensus 102 ~~~~~~~~~~gd~vli~~P~y~~~~~--------~~~~~g~~~~~v~--~~-~~~~~~~~~l~~~~~~-~~~~v~l~~p~ 169 (371)
T PRK05166 102 AVICRAVLRPGDRVVTLYPSFPLHED--------YPTMMGARVERVT--VT-PDLGFDLDALCAAVAR-APRMLMFSNPS 169 (371)
T ss_pred HHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCeEEEee--cC-CCCCCCHHHHHHhhhc-CCCEEEEeCCC
Confidence 88888999999999999887654321 2345676555444 54 2468999999998865 78999888777
Q ss_pred CC--CCCCHHHHHHHHHH--cCcEEEEeccccccccccCcccCCC---C--CCc-EEEECCCccC--ccccEEEEEEeCC
Q 016668 262 YP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPF---K--YCD-VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 262 ~~--~~~dl~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~---~--gaD-iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
|| ..++.+++.++++. .++++++|+++ ..+...+..++.+ . +.. |++.|++|+| +|.|.|+++..++
T Consensus 170 NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~ 248 (371)
T PRK05166 170 NPVGSWLTADQLARVLDATPPETLIVVDEAY-AEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDP 248 (371)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCcEEEEECcH-HHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCH
Confidence 76 56777777777664 37899999996 4444333233322 1 112 6789999996 7899999887544
Q ss_pred CCchhHHHHHHhhc
Q 016668 330 PVLGVELESAINNA 343 (385)
Q Consensus 330 ~~~~~~~~~~i~~~ 343 (385)
++.+.+...
T Consensus 249 -----~l~~~~~~~ 257 (371)
T PRK05166 249 -----ELVGLLDRV 257 (371)
T ss_pred -----HHHHHHHHh
Confidence 677766543
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=139.75 Aligned_cols=201 Identities=13% Similarity=0.064 Sum_probs=126.2
Q ss_pred ccccccCCC--CCcHHHHHHHhhHhhcc----CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc
Q 016668 104 SLELIASEN--FTSRAVMEAVGSCLTNK----YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 177 (385)
Q Consensus 104 ~l~Liasen--~~s~~V~~al~s~l~~~----y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG 177 (385)
.++|-..++ .+++.+.+++...+... ...+|+. ..|.+ ++++.+++++.+..|.+.+ + -+|..++|
T Consensus 36 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~LR~aia~~~~~~~g~~~~-~-~~I~it~G 107 (409)
T PRK07590 36 IIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGP---EQGYD---FLREKIAENDYQARGCDIS-A-DEIFISDG 107 (409)
T ss_pred eEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCC---CCCCH---HHHHHHHHHHHHhcCCcCC-h-hhEEECCC
Confidence 345543333 35788889888776532 1123422 23544 6777777777666655321 1 25777888
Q ss_pred HH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcce---------EEEEeccccCCC-CCCCHHHHHHH
Q 016668 178 SP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---------FESMPYRLDEST-GLVDYDMLEKT 246 (385)
Q Consensus 178 s~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~---------~~~i~~~~~~~~-~~iD~d~le~~ 246 (385)
+. |+.. +..+++|||+|++.+|.|.++.. .+...|.. .+++++++++++ ..+|++
T Consensus 108 a~~al~~-l~~~~~~gd~V~v~~P~Y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~----- 173 (409)
T PRK07590 108 AKCDTGN-ILDIFGPDNTIAVTDPVYPVYVD--------TNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP----- 173 (409)
T ss_pred HHHHHHH-HHHhcCCCCEEEEeCCCCcchHH--------HHHHcCCcccccccccccceeEeecccccCCcccCc-----
Confidence 75 6665 45678999999999997765432 22334432 114444455332 344432
Q ss_pred hhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CCC-c--EEEECCCcc
Q 016668 247 AILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYC-D--VVTTTTHKS 315 (385)
Q Consensus 247 i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~ga-D--iv~~S~hK~ 315 (385)
..++|+|+++.++||+ .++ +++|.++|+++|++||+|++| ..+...+..+.++ ++. + |++.|++|+
T Consensus 174 --~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y-~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~ 250 (409)
T PRK07590 174 --EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAY-EAFISDPSLPHSIYEIEGARECAIEFRSFSKT 250 (409)
T ss_pred --ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccc-hhhccCCCCCcchhhCCCcccceEEEecCccc
Confidence 2478999888888873 343 677888899999999999997 4454433222222 222 3 568999998
Q ss_pred C--ccccEEEEEEeCC
Q 016668 316 L--RGPRGGMIFFKKD 329 (385)
Q Consensus 316 l--~GprgG~I~~~~~ 329 (385)
+ +|.|.|+++++++
T Consensus 251 ~~~pGlRiG~~i~~~~ 266 (409)
T PRK07590 251 AGFTGTRCAYTVVPKE 266 (409)
T ss_pred cCCcCceeEEEEcCHH
Confidence 7 7899999999873
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=143.16 Aligned_cols=175 Identities=21% Similarity=0.212 Sum_probs=130.6
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccc
Q 016668 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTP 213 (385)
Q Consensus 134 ~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~ 213 (385)
|-.+|. |++..+.+|. .++++.|++. .+.+.||..|+..++..|+++||+|+..+..|+|... ++.
T Consensus 69 ~~Ysr~--~nPt~~~le~----~iaal~ga~~-----~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~--~l~- 134 (409)
T KOG0053|consen 69 YDYSRS--GNPTRDVLES----GIAALEGAAH-----ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLR--ILR- 134 (409)
T ss_pred cccccC--CCCchHHHHH----HHHHHhCCce-----EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHH--HHH-
Confidence 444454 7888888886 5788999987 3678899999999999999999999999988887532 111
Q ss_pred ccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccccc
Q 016668 214 KRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~G 291 (385)
+.....|.... .++ .-|++++++.+++ ++++|++..|.|| ...|+++|+++||++|+++++|++.+.+
T Consensus 135 -~~~~~~gie~~--~vd------~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 135 -KFLPKFGGEGD--FVD------VDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred -HHHHHhCceee--eec------hhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc
Confidence 11223343222 211 1256777777765 7899999999998 4679999999999999999999986443
Q ss_pred ccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhh
Q 016668 292 LVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 292 li~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~ 342 (385)
....|+. |||||+.|..|++.|.. +|.++.+.+ ++.+++..
T Consensus 205 -----~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~-----~~~~~l~~ 249 (409)
T KOG0053|consen 205 -----YNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSE-----ELASRLKF 249 (409)
T ss_pred -----cccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcH-----HHHHHHHH
Confidence 2356777 89999999999998874 588888754 66665543
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=137.92 Aligned_cols=201 Identities=20% Similarity=0.328 Sum_probs=117.3
Q ss_pred HHHHHHHhhH-hhc---cCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccC
Q 016668 116 RAVMEAVGSC-LTN---KYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP 191 (385)
Q Consensus 116 ~~V~~al~s~-l~~---~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~p 191 (385)
..|++|+... +.. ..+.||.. +..-.|.||+ -+++.||++.+- |..++.|||.|+..++.++|+|
T Consensus 27 ~KVL~Af~~~~vs~~hf~~tTGYGY-----~D~GRd~le~----iyA~vfgaE~AL--VRpq~vSGTHAi~~~Lfg~Lrp 95 (403)
T PF06838_consen 27 LKVLKAFQENRVSDSHFAGTTGYGY-----DDIGRDKLER----IYADVFGAEDAL--VRPQFVSGTHAIALALFGVLRP 95 (403)
T ss_dssp HHHHHHHHHTT--GGGCS---TT-T-----T-HHHHHHHH----HHHHHCT-SEEE--EETTS-SHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHcCCChhhcCCCCcCCC-----CCccHHHHHH----HHHHHhCchhhh--hcccccchHHHHHHHHHhcCCC
Confidence 5677776532 111 12234433 3334556766 478999999841 4556689999999999999999
Q ss_pred CCEEeecCC-CC---------CccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC-
Q 016668 192 HDRIMGLDL-PH---------GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS- 260 (385)
Q Consensus 192 GD~Vl~~~~-~~---------ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s- 260 (385)
||+++...- +| .|+ ..| .+.-.|..++.++ +. +++.+|++.+++.+++ ++|+|.+--|
T Consensus 96 GD~ll~~tG~PYDTL~~VIG~~g~-~~G------SL~e~Gi~Y~~v~--L~-~dg~~D~~~i~~~~~~-~tk~v~IQRSr 164 (403)
T PF06838_consen 96 GDELLSITGKPYDTLEEVIGIRGN-GPG------SLKEFGIKYREVP--LT-EDGTIDWEAIKKALKP-NTKMVLIQRSR 164 (403)
T ss_dssp T-EEEESSSS--CCHHHHHTSSSS-SSS------STGGGT-EEEE----B--TTSSB-HHHHHHHHHT-TEEEEEEE-S-
T ss_pred CCeEEEcCCCchhhHHHHhCCCCC-CCC------ChHHhCceeEEEe--ec-CCCCcCHHHHHHhhcc-CceEEEEecCC
Confidence 999997641 11 111 112 2334566666655 44 3589999999999974 7899988544
Q ss_pred CCC-----CCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCcc---ccEEEEEEeCC
Q 016668 261 AYP-----RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKD 329 (385)
Q Consensus 261 ~~~-----~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~G---prgG~I~~~~~ 329 (385)
.|. ...+++++.+++|+. ++++++|++++ .++- ...|.+ |||++.+|+=|+..| |.||+|++++
T Consensus 165 GYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYG-EFvE---~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~- 239 (403)
T PF06838_consen 165 GYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYG-EFVE---TQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRK- 239 (403)
T ss_dssp TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTT-TTTS---SS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESH-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcc-eecc---ccCccccchhheeccceeCCCCCccCcCCEEechH-
Confidence 232 123455566666654 89999999973 2221 124455 999999999999855 7899999998
Q ss_pred CCchhHHHHHHh-hccCCCc
Q 016668 330 PVLGVELESAIN-NAVFPGL 348 (385)
Q Consensus 330 ~~~~~~~~~~i~-~~~fp~~ 348 (385)
++.++.. +..-||+
T Consensus 240 -----~lVe~~a~RLTaPGi 254 (403)
T PF06838_consen 240 -----DLVERAAYRLTAPGI 254 (403)
T ss_dssp -----HHHHHHHHHHS-TTT
T ss_pred -----HHHHHHHhhhcCCcc
Confidence 5666553 3334543
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=140.07 Aligned_cols=211 Identities=18% Similarity=0.186 Sum_probs=132.3
Q ss_pred CcHHHHHHHhh-HhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH-HHHHHHh-cc
Q 016668 114 TSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN-FEVYTAI-LK 190 (385)
Q Consensus 114 ~s~~V~~al~s-~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~-~~a~~al-l~ 190 (385)
+++.+++++.. ........+|+. ..|.+ ++++..++++.+..|.+.+ ...+|.+++|+.++ ..++..+ .+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~---~lr~~ia~~~~~~~~~~~~-~~~~i~~~~G~~~~~~~~~~~~~~~ 91 (363)
T PF00155_consen 19 PPPAAIKAAIRGAATSSSFLGYPP---PQGYP---ELREAIADFLGRRYGVPVD-PEANILVTSGAQAALFLLLRLLKIN 91 (363)
T ss_dssp HHHHHHHHHHHHHHHHTGCTSSTC---TTHHH---HHHHHHHHHHHHHHTHHTT-GGEGEEEESHHHHHHHHHHHHHHSS
T ss_pred chHHHHHHHHHHhhcccccccCCC---chhhH---HHHHHHHHHhhhccCcccc-cceEEEEecccccchhhhhhccccc
Confidence 45666666554 223333335554 22433 6776655555544444332 11257888998744 4445555 67
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCCCC-
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYPR- 264 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~~~- 264 (385)
+||+|++++|.|.++.. .+...|..+..+++.. ++++.+|++++++.+++. ++++|+++.+++|+
T Consensus 92 ~~~~vlv~~P~y~~~~~--------~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG 162 (363)
T PF00155_consen 92 PGDTVLVPDPCYPSYIE--------AARLLGAEVIPVPLDS-ENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTG 162 (363)
T ss_dssp TTSEEEEEESSSTHHHH--------HHHHTTSEEEEEEEEE-TTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTT
T ss_pred ccccceecCCccccccc--------cccccCceeeeccccc-cccccccccccccccccccccccccceeeecccccccc
Confidence 99999999987765422 3456676544444322 245689999999998764 46788888877763
Q ss_pred -CCC---HHHHHHHHHHcCcEEEEeccccccccccCc-c---cCCCC-CCc-EEEECCCccC--ccccEEEEEEeCCCCc
Q 016668 265 -DFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-V---ADPFK-YCD-VVTTTTHKSL--RGPRGGMIFFKKDPVL 332 (385)
Q Consensus 265 -~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~---~~p~~-gaD-iv~~S~hK~l--~GprgG~I~~~~~~~~ 332 (385)
..+ +++|.++|+++|+++++|++|. ++..... . ...++ +.+ +++.|++|++ +|.|.|++++++
T Consensus 163 ~~~~~~~l~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~---- 237 (363)
T PF00155_consen 163 SVLSLEELRELAELAREYNIIIIVDEAYS-DLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPP---- 237 (363)
T ss_dssp BB--HHHHHHHHHHHHHTTSEEEEEETTT-TGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEH----
T ss_pred cccccccccchhhhhcccccceeeeecee-ccccCCCccCcccccccccccceeeeeccccccccccccccccchh----
Confidence 445 4555566999999999999984 4443321 1 11122 334 7899999986 678889999977
Q ss_pred hhHHHHHHhhccCCC
Q 016668 333 GVELESAINNAVFPG 347 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~ 347 (385)
++.+.+.....+.
T Consensus 238 --~~~~~l~~~~~~~ 250 (363)
T PF00155_consen 238 --ELIERLRRFQRSG 250 (363)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred --hhhhhhhhccccc
Confidence 6777776654443
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-14 Score=138.43 Aligned_cols=204 Identities=17% Similarity=0.160 Sum_probs=133.7
Q ss_pred cccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHH
Q 016668 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN 181 (385)
Q Consensus 105 l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~ 181 (385)
++|-..+| .+++.+.+++.+.+.. ..+||. .|. .++++ .++++++++.+ +|.+++|+ +|+
T Consensus 33 i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~----~~~---~~lr~----~ia~~~~~~~~----~I~it~G~~~al 95 (357)
T PRK14809 33 VKLSSNENPHGPSPAAVEAIREAAER--VHSYPK----ASH---ADLTA----ALADRWDVSPE----QVWLANGGDGAL 95 (357)
T ss_pred eEecCCCCCCCCCHHHHHHHHHHHhh--hhcCCC----CCH---HHHHH----HHHHHhCCCcc----eEEECCCHHHHH
Confidence 55544433 4688888988766542 234553 132 24444 45667788874 56677776 588
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.++++|||.|++.+|.|..+ .. .....|..+..++++.+ ++..+|.+++++... ++|+|+++.++
T Consensus 96 ~~~~~~~~~~gd~V~v~~P~y~~~---~~-----~~~~~g~~~~~~~l~~~-~~~~~~~~~~~~~~~--~~k~i~l~~p~ 164 (357)
T PRK14809 96 DYLARAMLDPGDTVLVPDPGFAYY---GM-----SARYHHGEVREYPVSKA-DDFEQTADTVLDAYD--GERIVYLTSPH 164 (357)
T ss_pred HHHHHHhcCCCCEEEEeCCChHHH---HH-----HHHHcCCeEEEEecccC-cCCCcCHHHHHHhhc--CCcEEEEeCCC
Confidence 889999999999999999865422 11 23455665555554322 235678888877652 58999888888
Q ss_pred CC--CCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCCCC-c-EEEECCCccC--ccccEEEEEEeCCCCch
Q 016668 262 YP--RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYC-D-VVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (385)
Q Consensus 262 ~~--~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~ga-D-iv~~S~hK~l--~GprgG~I~~~~~~~~~ 333 (385)
|| ...+.+++.++++.. +++||+|+++ ..+...+.....++.. . +++.|++|+| +|.|.|++++++
T Consensus 165 NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~----- 238 (357)
T PRK14809 165 NPTGSEIPLDEVEALAERTDEETLVVVDEAY-GEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE----- 238 (357)
T ss_pred CCCCcCCCHHHHHHHHHhCccCcEEEEechh-hhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCH-----
Confidence 77 466777777776654 7899999997 3444322111111222 3 6789999997 689999999987
Q ss_pred hHHHHHHhhc
Q 016668 334 VELESAINNA 343 (385)
Q Consensus 334 ~~~~~~i~~~ 343 (385)
++.+++.+.
T Consensus 239 -~~~~~~~~~ 247 (357)
T PRK14809 239 -EWADAYARV 247 (357)
T ss_pred -HHHHHHHHh
Confidence 577777654
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-15 Score=149.92 Aligned_cols=198 Identities=19% Similarity=0.213 Sum_probs=141.5
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
+++.+++.||+++. .+.++|| .||.++..+++.|||.||+... .|.|... .+.++|+....+.-..
T Consensus 75 Aqe~aA~~fgAd~t-----yFvvNGTS~ank~vi~a~~~~GD~VLvdRN---~HKSi~~-----glilaGa~Pvyl~p~~ 141 (557)
T COG1982 75 AQELAARVFGADHT-----YFVVNGTSTANKAVINAVLTPGDKVLVDRN---CHKSIHH-----GLILAGATPVYLEPSR 141 (557)
T ss_pred HHHHHHHHhCCCce-----EEEECCccHHHHHHHHhhcCCCCEEEecCC---ccHHHHH-----HHHHcCCceEEecCCC
Confidence 67789999999985 2335555 5999999999999999999875 4444321 3456776433332223
Q ss_pred cCCC---CCCCHHHHHHHhhhcC-C-cEE-EEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccC-CCC-
Q 016668 232 DEST---GLVDYDMLEKTAILFR-P-KLI-IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD-PFK- 303 (385)
Q Consensus 232 ~~~~---~~iD~d~le~~i~~~~-p-klI-i~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~-p~~- 303 (385)
|+.- +.|+.+.+++.+.++. . |++ +++++.+|...|+++|++.+++.++|+.+|++|.+.....+..+. ..+
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~ 221 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG 221 (557)
T ss_pred CccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhc
Confidence 3322 3689999998875532 2 554 455666799999999999999999999999999776555554443 232
Q ss_pred CCcEEEECCCccCccc-cEEEEEEeCC-CCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHh
Q 016668 304 YCDVVTTTTHKSLRGP-RGGMIFFKKD-PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 304 gaDiv~~S~hK~l~Gp-rgG~I~~~~~-~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~ 367 (385)
++|+++.|+||.+++. ++.+|..++. . --.++++.+......++|+...+|++.+|-...
T Consensus 222 ~~~~~tqS~HK~l~alSQaS~iHv~~~~~----~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~ 283 (557)
T COG1982 222 GADFVTQSTHKLLAALSQASMIHVKDGRA----VNHERFNEALMMHQSTSPSYPLMASLDVARMQE 283 (557)
T ss_pred CceEEEechhhhhhhhhhhHHHhhCCCcc----CCHHHHHHHHHHHccCCchHHHHHHHHHHHHhh
Confidence 7899999999999876 5567777752 1 234566666555556789999999999955433
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-13 Score=135.67 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHcCCCC-CCCcceeecCCcHHHHHHHHHHhcc--CCCEEeecCCCCCccccCCccccccccccCcc
Q 016668 146 IDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (385)
Q Consensus 146 ~~~le~~~~~~la~lfg~~~-~~~~~~V~~~sGs~A~~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (385)
..++|+...+|++++||.+. ..|| +++++||+||+.++.+.-+ +...|++++. .|.|. .+.+.+.|.
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G--~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~---aH~Sv-----~KAa~llgi 200 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWG--YITNCGTEGNLHGILVGREVFPDGILYASRE---SHYSV-----FKAARMYRM 200 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeE--EEeCcHHHHHHHHHHHHHhhcCCcEEEEcCC---ccHHH-----HHHHHhcCC
Confidence 45899999999999999975 3465 4568889999988877632 3345655553 44332 145677887
Q ss_pred eEEEEeccccCCCCCCCHHHHHHHhhhcC--CcEEEE--cCCCCCCCCCHHHHHHHHHHcCc-----EEEEecccccccc
Q 016668 223 YFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIA--GASAYPRDFDYPRMRQIADAVGA-----LLMMDMAHISGLV 293 (385)
Q Consensus 223 ~~~~i~~~~~~~~~~iD~d~le~~i~~~~--pklIi~--~~s~~~~~~dl~~I~~ia~~~ga-----~livD~ah~~Gli 293 (385)
.+..++ ++ +++.+|+++|++.+.+.+ |-+|+. |.+..|..-|+++|.++|+++|+ ||++|+|++ |.+
T Consensus 201 ~~~~Vp--~d-~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~G-G~~ 276 (470)
T PLN02263 201 ECVKVD--TL-VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALF-GLM 276 (470)
T ss_pred cceEec--cC-CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccch-hhH
Confidence 666555 55 468999999999886543 545543 45566778899999999999997 999999974 433
Q ss_pred cc-CcccCCCC---CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHhh------ccCCCccCCChHHHHHHHHH
Q 016668 294 AA-SVVADPFK---YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN------AVFPGLQGGPHNHTIGGLAV 362 (385)
Q Consensus 294 ~~-g~~~~p~~---gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~~------~~fp~~qg~p~~~~iaala~ 362 (385)
.. -....+++ .+|-++.++||++..|-+ |+++++++ ..+.+.. ..-+.++|+-+....+.+=.
T Consensus 277 lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~------~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~ 350 (470)
T PLN02263 277 MPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRME------HINVLSSNVEYLASRDATIMGSRNGHAPIFLWY 350 (470)
T ss_pred hhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehh------hHhhhccChHhhCCCCCCcCCCCCcHHHHHHHH
Confidence 21 00111233 489999999999988855 88888874 2222211 11234455444333344444
Q ss_pred HHHHhhCchHHHHHHHHhc
Q 016668 363 CLKHAQSPEFKVYQNKSAC 381 (385)
Q Consensus 363 Al~e~~~~~~~~y~~~v~~ 381 (385)
+|+..=.++|++..++.++
T Consensus 351 ~L~~~G~~G~~~~i~~~~~ 369 (470)
T PLN02263 351 TLNRKGYRGFQKEVQKCLR 369 (470)
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 5655555556666555544
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-14 Score=137.75 Aligned_cols=201 Identities=14% Similarity=0.115 Sum_probs=128.0
Q ss_pred cccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HH
Q 016668 105 LELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (385)
Q Consensus 105 l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~ 181 (385)
++|...+|+ +|+.+++++.+.+.. . ..||.. + ..++ ++.+++++|++++ +|.+++|+. ++
T Consensus 23 i~l~~~~~~~~~p~~~~~a~~~~~~~-~-~~y~~~----~---~~~l----r~~ia~~~~~~~~----~i~it~Ga~~~l 85 (356)
T PRK08056 23 LDFSANINPLGMPVSLKRAIIDNLDC-A-ERYPDV----E---YRHL----HQALARHHQVPAS----WILAGNGETESI 85 (356)
T ss_pred EEeccccCCCCCCHHHHHHHHHHHHh-c-ccCcCc----c---HHHH----HHHHHHHhCcChh----hEEECCCHHHHH
Confidence 555555554 689999998766542 1 234431 1 2244 4457778898874 566777764 87
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC-CCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
..++.++ .||| +++.+|.+..+. ..+...|..+..++ +++++ ..+| +++++.+. .++|+|+++.+
T Consensus 86 ~~~~~~l-~~g~-viv~~P~y~~~~--------~~~~~~g~~~~~v~--~~~~~~~~~~-~~~~~~~~-~~~k~v~l~~p 151 (356)
T PRK08056 86 FAVVSGL-KPRR-AMIVTPGFAEYR--------RALQQVGCEIRRYS--LREADGWQLT-DAILEALT-PDLDCLFLCTP 151 (356)
T ss_pred HHHHHHh-CCCC-EEEeCCCcHHHH--------HHHHHcCCeEEEEe--cccccCCCcc-HHHHHhcc-CCCCEEEEeCC
Confidence 7777765 7887 555666443221 13345676555444 44333 3566 34555554 47899998888
Q ss_pred CCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCc-ccCCCC--CCcEEEECCCccC--ccccEEEEEEeCCC
Q 016668 261 AYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 261 ~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p~~--gaDiv~~S~hK~l--~GprgG~I~~~~~~ 330 (385)
+|| ...+ +++|+++|+++|+++|+|+++ .++...+. ....+. ...+++.|+||++ +|.|.|++++.++
T Consensus 152 ~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~- 229 (356)
T PRK08056 152 NNPTGLLPERQLLQAIAERCKSLNIALILDEAF-IDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDD- 229 (356)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCEEEEecch-hccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCH-
Confidence 876 4555 788999999999999999996 45443321 112233 2347899999996 6789999998653
Q ss_pred CchhHHHHHHhh
Q 016668 331 VLGVELESAINN 342 (385)
Q Consensus 331 ~~~~~~~~~i~~ 342 (385)
++.+.+..
T Consensus 230 ----~~~~~l~~ 237 (356)
T PRK08056 230 ----AAVARMRR 237 (356)
T ss_pred ----HHHHHHHH
Confidence 46566654
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-14 Score=144.17 Aligned_cols=170 Identities=17% Similarity=0.129 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCc-ceeecCCcH-HHHHHHHHH-----hccCCCEEeecCCCCCccccCCccccccccccC
Q 016668 148 ELETLCQKRALAAFNLDENKWG-VNVQPLSGS-PANFEVYTA-----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 220 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~-~~V~~~sGs-~A~~~a~~a-----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~ 220 (385)
..|+.+++++.+.++......+ .+|..++|+ +|+..++.+ +++|||+|++++|.+..+.. .+.+.
T Consensus 133 ~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~--------~~~l~ 204 (521)
T TIGR03801 133 HSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLE--------IPELP 204 (521)
T ss_pred HHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHH--------HHHHh
Confidence 4555555666666543211110 156666665 588888876 78999999999997655432 22333
Q ss_pred cceEEEEeccccCC-C-----CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHc--CcEEEEecc
Q 016668 221 SIYFESMPYRLDES-T-----GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAV--GALLMMDMA 287 (385)
Q Consensus 221 g~~~~~i~~~~~~~-~-----~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~--ga~livD~a 287 (385)
+..+++++++.+++ . +.+|.++++++++. ++|+|+++.|+||+ ..+ +++|.++|+++ +++||+|++
T Consensus 205 ~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~-~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEv 283 (521)
T TIGR03801 205 RYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP-SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDV 283 (521)
T ss_pred cCCcEEEEeecccccccccccCCCCHHHHHHhcCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 33345555445422 1 67999999987754 79999988888873 444 77888899986 999999999
Q ss_pred ccccccccCcccCCCC-CCc--EEEECCCccC--ccccEEEEEEeCC
Q 016668 288 HISGLVAASVVADPFK-YCD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 288 h~~Gli~~g~~~~p~~-gaD--iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
+. .+.. .+.+.+. ..| +++.|++|++ +|+|.|+++.+++
T Consensus 284 Y~-~f~~--~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 284 YG-TFVD--DFRSLFAELPYNTIGVYSFSKYFGATGWRLGTIALHKD 327 (521)
T ss_pred ch-hhcc--cccchhhhCCCCEEEEEcchhhccCchhhhhhhhcCch
Confidence 74 3432 2223222 222 7889999997 8999999998864
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-13 Score=134.28 Aligned_cols=199 Identities=16% Similarity=0.111 Sum_probs=126.8
Q ss_pred ccccc--CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceeecCCcH-HH
Q 016668 105 LELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGS-PA 180 (385)
Q Consensus 105 l~Lia--sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~-~~~~~~~V~~~sGs-~A 180 (385)
++|-. +.+.+++.+.+++.+... ..+|+. ..|.+ ++++.+++++.+.+|.+ .+ . -+|..++|+ .|
T Consensus 24 i~l~~~~p~~~~~~~~~~~~~~~~~---~~~Y~~---~~G~~---~lr~~ia~~~~~~~~~~~~~-~-~~I~it~G~~~~ 92 (357)
T TIGR03539 24 VDLSVGTPVDPVPPLIRAALAAAAD---APGYPQ---TWGTP---ELREAIVDWLERRRGVPGLD-P-TAVLPVIGTKEL 92 (357)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHh---hCCCCc---ccCCH---HHHHHHHHHHHHhcCCCCCC-c-CeEEEccChHHH
Confidence 45543 344557888888765432 123543 22444 67777777888877754 21 1 256677775 58
Q ss_pred HHHHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 181 NFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 181 ~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
+..++..+ ++|||.|++.+|.|.++.. .+...|.. .+.+ + |++.++ ..++++|+++.
T Consensus 93 i~~~~~~l~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~--~~~v--~------~~~~l~----~~~~~~v~~~~ 150 (357)
T TIGR03539 93 VAWLPTLLGLGPGDTVVIPELAYPTYEV--------GALLAGAT--PVAA--D------DPTELD----PVGPDLIWLNS 150 (357)
T ss_pred HHHHHHHHcCCCCCEEEECCCCcHHHHH--------HHHhcCCE--Eecc--C------ChhhcC----ccCccEEEEeC
Confidence 88887877 7999999999987654421 23445653 3332 1 223322 23789998887
Q ss_pred CCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC------CC--cEEEECCCccC--ccccEEEE
Q 016668 260 SAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK------YC--DVVTTTTHKSL--RGPRGGMI 324 (385)
Q Consensus 260 s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~------ga--Div~~S~hK~l--~GprgG~I 324 (385)
++||+ ..+ +++|.++|+++|+++|+|+++. .+...+.....+. .. -+++.|++|.+ +|+|+|++
T Consensus 151 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~ 229 (357)
T TIGR03539 151 PGNPTGRVLSVDELRAIVAWARERGAVVASDECYL-ELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFV 229 (357)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchh-hhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEE
Confidence 77763 344 6778899999999999999973 4443332111121 11 27889999985 88999999
Q ss_pred EEeCCCCchhHHHHHHhhc
Q 016668 325 FFKKDPVLGVELESAINNA 343 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~~ 343 (385)
++++ ++.+++...
T Consensus 230 i~~~------~~~~~~~~~ 242 (357)
T TIGR03539 230 AGDP------ALVAELLTV 242 (357)
T ss_pred ecCH------HHHHHHHHH
Confidence 9876 566666543
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-13 Score=136.21 Aligned_cols=195 Identities=21% Similarity=0.183 Sum_probs=131.0
Q ss_pred CCcHHHHHHHhhHhhccC--CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceeecCCc-HHHHHHHHHH
Q 016668 113 FTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSG-SPANFEVYTA 187 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y--~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~--~~~~~~~~V~~~sG-s~A~~~a~~a 187 (385)
.+++.+.+++...+.... ..+|+. ..|.+ .+++..++++.+.++. +++ +|.+++| ++++..++.+
T Consensus 46 ~~~~~v~~a~~~~~~~~~~~~~~y~~---~~g~~---~lr~~ia~~l~~~~~~~~~~~----~i~~t~G~~~al~~~~~~ 115 (394)
T PRK06836 46 PPPAAVKEALRELAEEEDPGLHGYMP---NAGYP---EVREAIAESLNRRFGTPLTAD----HIVMTCGAAGALNVALKA 115 (394)
T ss_pred CCCHHHHHHHHHHHhcCCcCcccCCC---CCCCH---HHHHHHHHHHHHHhCCCCCcC----cEEEeCChHHHHHHHHHH
Confidence 457889998876654321 112322 12333 5666666666666554 332 4555555 5699999999
Q ss_pred hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CC
Q 016668 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RD 265 (385)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~ 265 (385)
+++|||.|++.+|.+.++.. .....|..+..+ +.+++++.+|++++++.++. ++|+|+++.++|| ..
T Consensus 116 l~~~gd~Vli~~p~~~~~~~--------~~~~~g~~v~~v--~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~ 184 (394)
T PRK06836 116 ILNPGDEVIVFAPYFVEYRF--------YVDNHGGKLVVV--PTDTDTFQPDLDALEAAITP-KTKAVIINSPNNPTGVV 184 (394)
T ss_pred hcCCCCEEEEcCCCCccHHH--------HHHHcCCEEEEE--ecCCccCcCCHHHHHhhcCc-CceEEEEeCCCCCCCcC
Confidence 99999999999987655422 234556654444 46655578999999999865 7899988777776 34
Q ss_pred CC---HHHHHHHHHH------cCcEEEEeccccccccccCc-ccCCCCC--CcEEEECCCccC--ccccEEEEEEeCC
Q 016668 266 FD---YPRMRQIADA------VGALLMMDMAHISGLVAASV-VADPFKY--CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 266 ~d---l~~I~~ia~~------~ga~livD~ah~~Gli~~g~-~~~p~~g--aDiv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
.+ +++|.++|++ +|+++++|+++ ..+...+. .+..+.. -.+++.|++|+| +|.|.|+++++++
T Consensus 185 ~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~ 261 (394)
T PRK06836 185 YSEETLKALAALLEEKSKEYGRPIYLISDEPY-REIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPE 261 (394)
T ss_pred CCHHHHHHHHHHHHHhhhccCCCeEEEEeccc-cccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHH
Confidence 44 6777888998 89999999996 45554432 1221222 237889999987 5778999998764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=150.06 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=140.3
Q ss_pred cccccCC--CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HH
Q 016668 105 LELIASE--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (385)
Q Consensus 105 l~Liase--n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~ 181 (385)
+.|-..+ ..+|+.+++++...+.. +. + +.|.+ ++.+..++++++.+|++.+ +.-+|.+++|+. ++
T Consensus 700 I~LsinE~d~ppPp~V~eAi~eal~~-~~--~-----s~g~p---dlr~aLa~~la~~~Gv~~d-~~e~IIvt~Gs~elL 767 (1082)
T PLN02672 700 IHMDVDESFLPVPSAVKASIFESFVR-QN--I-----SESET---DPRPSILQFIKSNYGFPTD-SCTEFVYGDTSLALF 767 (1082)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHhh-cC--C-----CCCCh---HHHHHHHHHHHHHhCcCCC-CCCEEEEeCCHHHHH
Confidence 4444444 44689999998876532 21 1 11222 3455677889999999763 112566778876 66
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
..++.++++|||.|++++|.|+.+.. .+...|..+..++ +++ ++..+|++++++.++..+.++|+++.|
T Consensus 768 ~lll~aLl~pGD~VLVp~PtY~~Y~~--------~a~~~Ga~vv~Vp--l~~e~gf~lD~d~Le~al~~~~~~~I~L~nP 837 (1082)
T PLN02672 768 NKLVLCCVQEGGTLCFPAGSNGTYVS--------AAKFLKANFRRIP--TKSSDGFKLTAKTLASTLETVKKPWVYISGP 837 (1082)
T ss_pred HHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCCEEEEEe--cccccCCCCCHHHHHHHhccCCCCEEEEECc
Confidence 67889999999999999997765532 3456777555555 543 346899999999985423445655555
Q ss_pred C-CCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCccc--CCC-------CC---C-c-EEEECCCccC--cc
Q 016668 261 A-YPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF-------KY---C-D-VVTTTTHKSL--RG 318 (385)
Q Consensus 261 ~-~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~-------~g---a-D-iv~~S~hK~l--~G 318 (385)
+ ||+ .+ ++++|.++|+++|++||+|++| .++.+.+... .++ +. . . +++.|++|.+ +|
T Consensus 838 nhNPTG~v~S~eeLe~Llela~k~di~VIsDEaY-sdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpG 916 (1082)
T PLN02672 838 TINPTGLLYSNSEIEEILSVCAKYGARVIIDTSF-SGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGG 916 (1082)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCC-CccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHH
Confidence 4 763 33 4778889999999999999997 5555543210 001 11 1 2 4678999875 88
Q ss_pred ccEEEEEEeCCCCchhHHHHHHhh
Q 016668 319 PRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 319 prgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+|.||++++++ ++.+.+..
T Consensus 917 LRIGylIap~~-----eLi~~l~~ 935 (1082)
T PLN02672 917 HEFGFLALNDS-----VLIDAFHS 935 (1082)
T ss_pred HHheeEEeCCH-----HHHHHHHH
Confidence 99999999764 57777755
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-15 Score=141.94 Aligned_cols=194 Identities=21% Similarity=0.246 Sum_probs=131.9
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
.|+| ++|.+++++..... |.. .|++.++..++|+ +++++||.+. .+++.|||.||..++.++
T Consensus 3 ~SD~-~~~~m~~a~~~a~~-----gd~---~Yg~D~~~~~l~~----~i~~l~g~e~-----a~f~~sGT~An~~al~~~ 64 (290)
T PF01212_consen 3 RSDT-PTPAMLEAMAAANV-----GDD---AYGEDPTTARLEE----RIAELFGKEA-----ALFVPSGTMANQLALRAH 64 (290)
T ss_dssp S-SS-S-HHEEHHHHHTTS-----B-C---CTTSSHHHHHHHH----HHHHHHTSSE-----EEEESSHHHHHHHHHHHH
T ss_pred CccC-CCHHHHHHHHcccc-----CCc---ccCCChhHHHHHH----HHHHHcCCCE-----EEEeCCCChHHHHHHHHH
Confidence 4777 88999999954321 222 2667777777775 6889999986 357789999999999999
Q ss_pred ccCCCEEeecCCCCCccccCCcccccccc-ccCcceEEEEeccccCCCCCCCHHHHHHHhhh-----cCCcEEEEcCCCC
Q 016668 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-----FRPKLIIAGASAY 262 (385)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~-~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~-----~~pklIi~~~s~~ 262 (385)
++|++.|++.+. +|+.. .....+ .+.|.++ ++++.+ +.+.+|+++|++.++. .+|++|.+..+++
T Consensus 65 ~~~~~~vi~~~~---aHi~~---~E~ga~~~~~G~~~--~~l~~~-~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~ 135 (290)
T PF01212_consen 65 LRPGESVICADT---AHIHF---DETGAIEELSGAKL--IPLPSD-DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTE 135 (290)
T ss_dssp HHTTEEEEEETT---EHHHH---SSTTHHHHHTTCEE--EEEBEC-TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBT
T ss_pred HhcCCceecccc---ceeee---eccchhhHhcCcEE--EECCCc-ccCCCCHHHHHHHhhhccccCCCccEEEEEecCc
Confidence 999999998875 44321 111122 3566644 443332 2389999999999976 3578888876654
Q ss_pred ---CCCC---CHHHHHHHHHHcCcEEEEecccccccc-ccCcccC-CCCCCcEEEECCCccCccccEEEEEEeCC
Q 016668 263 ---PRDF---DYPRMRQIADAVGALLMMDMAHISGLV-AASVVAD-PFKYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (385)
Q Consensus 263 ---~~~~---dl~~I~~ia~~~ga~livD~ah~~Gli-~~g~~~~-p~~gaDiv~~S~hK~l~GprgG~I~~~~~ 329 (385)
|... ++++|.++|+++|+.|+.|+|-..--. ..+..+. ...++|++++|++|.+..|-|++++++++
T Consensus 136 ~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~ 210 (290)
T PF01212_consen 136 LAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKE 210 (290)
T ss_dssp TTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESHH
T ss_pred CCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEechH
Confidence 5555 467788899999999999998532211 1111111 12389999999999998899999999985
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.4e-14 Score=140.66 Aligned_cols=167 Identities=16% Similarity=0.228 Sum_probs=110.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceee---cCCcHHHHHHHHH---HhccCCCEEeecCCCCCccccCCccc
Q 016668 141 GGNEYIDELETLCQKRALAAFN--LDENKWGVNVQ---PLSGSPANFEVYT---AILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 141 ~G~~~~~~le~~~~~~la~lfg--~~~~~~~~~V~---~~sGs~A~~~a~~---all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
.|.+ ++++.+.+++.+..+ ++.+ +|. +.+|+.|+..++. ++++|||+|++.+|.|.++..
T Consensus 72 ~G~~---~lR~aia~~~~~~~~~~~~~~----~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~----- 139 (404)
T PTZ00376 72 EGLQ---SFIEAAQKLLFGEASYALAEK----RIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVN----- 139 (404)
T ss_pred CCCH---HHHHHHHHHhcCCCccccccC----eEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHH-----
Confidence 3555 677766666644433 2332 343 4445567766654 678999999999997765532
Q ss_pred cccccccCcceEEEEeccc-cCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEE
Q 016668 213 PKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMM 284 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~-~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~liv 284 (385)
.+...|..+..++ + +++++.+|++.+++.++.. +.++++++.++||+ .. ++++|.++|+++|+++|+
T Consensus 140 ---~~~~~G~~~~~v~--l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 214 (404)
T PTZ00376 140 ---IFKSAGLNVKEYR--YYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFF 214 (404)
T ss_pred ---HHHHcCCceeecc--ccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 3456776554444 5 2234689999999988542 34567778888874 33 467888999999999999
Q ss_pred eccccccccccCc---cc--CCCC-CC-c-EEEECCCccC--ccccEEEEE
Q 016668 285 DMAHISGLVAASV---VA--DPFK-YC-D-VVTTTTHKSL--RGPRGGMIF 325 (385)
Q Consensus 285 D~ah~~Gli~~g~---~~--~p~~-ga-D-iv~~S~hK~l--~GprgG~I~ 325 (385)
|+++ .++...+. .+ ..+. .. . +++.|++|++ +|+|.|+++
T Consensus 215 De~Y-~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~ 264 (404)
T PTZ00376 215 DMAY-QGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALH 264 (404)
T ss_pred ehhh-cCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEE
Confidence 9996 45554321 11 1111 22 3 6789999997 689999984
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-13 Score=139.18 Aligned_cols=175 Identities=19% Similarity=0.202 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEE
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (385)
.+++...+++....|.... + .+|..|+|++ |+..++..+++|||.|++-+|.|-+.. ......|.. .
T Consensus 136 ~LR~~ia~~l~~~~g~~~~-~-~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~--------~~~~~~g~~--~ 203 (459)
T COG1167 136 ELREAIAAYLLARRGISCE-P-EQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL--------QALEALGAR--V 203 (459)
T ss_pred HHHHHHHHHHHHhcCCccC-c-CeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHH--------HHHHHcCCc--E
Confidence 6777777788767777642 2 2677888886 999999999999999999988664432 134556664 4
Q ss_pred EeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CC--CCCCH---HHHHHHHHHcCcEEEEeccccccccccCcccC
Q 016668 227 MPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YP--RDFDY---PRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (385)
Q Consensus 227 i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~--~~~dl---~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~ 300 (385)
+++++| ..-+|+|+|++.++..+||++++.++. || ...+. ++|.++|+++|+++|.|..+ ..+.+.+..+.
T Consensus 204 ~~vp~d--~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y-~el~~~~~p~~ 280 (459)
T COG1167 204 IPVPVD--EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYY-GELRYDGPPPP 280 (459)
T ss_pred EecCCC--CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcc-hhhhcCCCCCC
Confidence 555465 345999999999987789999987653 55 34444 57999999999999999985 45555544333
Q ss_pred CCC---CCc--EEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 301 PFK---YCD--VVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 301 p~~---gaD--iv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
++. .-+ +.++||+|++ +|.|.|||+.++ ++.+++...
T Consensus 281 ~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~------~~~~~~~~~ 323 (459)
T COG1167 281 PLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPP------ELIEKLLRL 323 (459)
T ss_pred ChHhhCCCCCEEEEeeehhhcccccceeeeeCCH------HHHHHHHHH
Confidence 343 212 6799999997 889999999998 566665443
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=140.42 Aligned_cols=172 Identities=19% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCC-CCCc--ceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccccccc
Q 016668 141 GGNEYIDELETLCQKRALAAFNLDE-NKWG--VNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRV 217 (385)
Q Consensus 141 ~G~~~~~~le~~~~~~la~lfg~~~-~~~~--~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~ 217 (385)
.|.+ +|++..++++.+..+... +++- +.+..++|+.++...+..++.|||+|++.+|.|.+|.. .+
T Consensus 91 ~G~~---~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~--------~~ 159 (423)
T PLN02397 91 EGLA---EFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHN--------IF 159 (423)
T ss_pred CCCH---HHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHH--------HH
Confidence 4655 677766666644332211 1110 11222334445666666777899999999997766532 34
Q ss_pred ccCcceEEEEeccccCCCCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccc
Q 016668 218 SGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 218 ~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
...|..+..+++. +++++.+|++.+++.++. .++++|+++.++||+ .. .+++|.++|+++|+++|+|+++ .
T Consensus 160 ~~~g~~~~~v~l~-~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y-~ 237 (423)
T PLN02397 160 RDAGVPVRTYRYY-DPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAY-Q 237 (423)
T ss_pred HHcCCeEEEeecc-cCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc-C
Confidence 5667655544431 223468999999887753 245677778788873 33 4778899999999999999996 6
Q ss_pred cccccCc---ccC--CCC-CCc--EEEECCCccC--ccccEEEEE
Q 016668 291 GLVAASV---VAD--PFK-YCD--VVTTTTHKSL--RGPRGGMIF 325 (385)
Q Consensus 291 Gli~~g~---~~~--p~~-gaD--iv~~S~hK~l--~GprgG~I~ 325 (385)
++.+++. .++ .+. ..+ +++.|++|++ +|+|.||++
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v 282 (423)
T PLN02397 238 GFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALS 282 (423)
T ss_pred CccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEE
Confidence 6665431 111 121 123 6789999997 599999985
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=137.48 Aligned_cols=174 Identities=16% Similarity=0.107 Sum_probs=117.6
Q ss_pred HHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCC-CEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
++.+++++|++.+ +|.+++|+ +++..++.+++++| |+|++.+|.++.+.. .....|..+..+++..
T Consensus 65 r~~ia~~~~~~~~----~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~--------~~~~~g~~~~~v~~~~ 132 (364)
T PRK04781 65 RSALAALYGCAPE----QLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAV--------CARLQNAPLVEVPLVD 132 (364)
T ss_pred HHHHHHHhCcChH----HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHH--------HHHHcCCEEEEEecCC
Confidence 3456778898774 57777775 59899999999999 799998886543211 2245566555555321
Q ss_pred cCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHH--cCcEEEEeccccccccccCcccCCCCCCc-
Q 016668 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFKYCD- 306 (385)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~~gaD- 306 (385)
+.+...+|++++++.+...++|+|+++.++|| ...+.+++.++++. .++++|+|+++. .+.........++..|
T Consensus 133 ~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~-~f~~~~~~~~~~~~~~~ 211 (364)
T PRK04781 133 GADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYG-EFSDVPSAVGLLARYDN 211 (364)
T ss_pred CccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcch-hhcCCcchHHHHhhCCC
Confidence 22234689999876654457899988878776 56788877777765 389999999963 4432111111122223
Q ss_pred -EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCC
Q 016668 307 -VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFP 346 (385)
Q Consensus 307 -iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp 346 (385)
+++.|++|+| +|.|.|++++++ ++.+.+.+...+
T Consensus 212 vi~~~SfSK~~gl~GlRvGy~v~~~------~l~~~l~~~~~~ 248 (364)
T PRK04781 212 LAVLRTLSKAHALAAARIGSLIANA------ELIAVLRRCQAP 248 (364)
T ss_pred EEEEecChhhcccccceeeeeeCCH------HHHHHHHhccCC
Confidence 6789999986 699999999987 677877765443
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-13 Score=133.05 Aligned_cols=201 Identities=15% Similarity=0.123 Sum_probs=132.1
Q ss_pred cccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HH
Q 016668 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (385)
Q Consensus 105 l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~ 181 (385)
++|-..+| .+++.+++++.+.+......+||. .|.+ +++ +.+++++|++.+ +|.+++|+. ++
T Consensus 21 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----~g~~---~lr----~~ia~~~~~~~~----~I~~t~G~~~~l 85 (337)
T PRK03967 21 IWLDKNENPFDLPEELKEEIFEELKRVPFNRYPH----ITSD---PLR----EAIAEFYGLDAE----NIAVGNGSDELI 85 (337)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHhhcCccccCCC----CCHH---HHH----HHHHHHhCcCcc----eEEEcCCHHHHH
Confidence 44443343 357889998877664322234553 1332 444 457778888774 566777765 77
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.++ +||+|++.+|.|+.+.. .....|..+..++ ++ +++.+|++.+++.. .++|++++..++
T Consensus 86 ~~~~~~~--~gd~V~v~~P~y~~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~--~~~~~v~~~~P~ 150 (337)
T PRK03967 86 SYLVKLF--EGKHIVITPPTFGMYSF--------YAKLNGIPVIDVP--LK-EDFTIDGERIAEKA--KNASAVFICSPN 150 (337)
T ss_pred HHHHHHh--CCCeEEEeCCChHHHHH--------HHHHcCCeEEEee--cC-CCCCcCHHHHHHhc--cCCCEEEEeCCC
Confidence 6665554 89999999987653311 2345666444444 54 24679999998865 267888887778
Q ss_pred CC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCc-EEEECCCccC--ccccEEEEEEeCCCCchhH
Q 016668 262 YP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVE 335 (385)
Q Consensus 262 ~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaD-iv~~S~hK~l--~GprgG~I~~~~~~~~~~~ 335 (385)
|| ...+.++|.++++ +++++|+|+++. .+.. ......++ .-. +++.|++|+| +|.|.|++++++ +
T Consensus 151 NPtG~~~~~~~l~~i~~-~~~~ii~De~y~-~~~~-~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~------~ 221 (337)
T PRK03967 151 NPTGNLQPEEEILKVLE-TGKPVVLDEAYA-EFSG-KSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANE------E 221 (337)
T ss_pred CCCCCCCCHHHHHHHHh-cCCEEEEECchh-hhcc-cchHHHHhhCCCEEEEecchHhhcchhhhheeeecCH------H
Confidence 76 5678899999995 699999999974 4431 11111112 223 6789999997 688999999976 6
Q ss_pred HHHHHhhcc
Q 016668 336 LESAINNAV 344 (385)
Q Consensus 336 ~~~~i~~~~ 344 (385)
+.+.+....
T Consensus 222 ~i~~~~~~~ 230 (337)
T PRK03967 222 IIDALYRIK 230 (337)
T ss_pred HHHHHHhhc
Confidence 777776554
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-13 Score=146.87 Aligned_cols=165 Identities=19% Similarity=0.189 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--------cCCCEEeecCCCCCccccCCccccccccc
Q 016668 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--------KPHDRIMGLDLPHGGHLSHGFMTPKRRVS 218 (385)
Q Consensus 147 ~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--------~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (385)
.+++...++|+++++|.+. +.+++.+|+.|+.+.++++- ...++|+++...||.++. .+.
T Consensus 529 lq~i~elq~~l~eltGmd~----~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPa--------sa~ 596 (939)
T TIGR00461 529 QELIAQLEKWLCSITGFDA----ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPA--------SAA 596 (939)
T ss_pred HHHHHHHHHHHHHHHCCCC----cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHH--------HHH
Confidence 3566667889999999996 57889999998887666663 234678888876665433 234
Q ss_pred cCcceEEEEeccccCCCCCCCHHHHHHHhhh--cCCcEEEEcC-CCCCCCCC-HHHHHHHHHHcCcEEEEeccccccccc
Q 016668 219 GTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGA-SAYPRDFD-YPRMRQIADAVGALLMMDMAHISGLVA 294 (385)
Q Consensus 219 ~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~-s~~~~~~d-l~~I~~ia~~~ga~livD~ah~~Gli~ 294 (385)
..|.++..++ .+ ++|.+|+++|++.+++ .++++|++.. ++++...| +++|+++||++|.++++|++|..++..
T Consensus 597 ~~G~~Vv~V~--~d-~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~ 673 (939)
T TIGR00461 597 MAGMQVVPVN--CD-QDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVG 673 (939)
T ss_pred HCCCEEEEec--cC-CCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChhhCCC
Confidence 5676555555 54 5789999999999974 3677777654 44565545 999999999999999999999664432
Q ss_pred cCcccCCCC-CCcEEEECCCccCcccc-----E-EEEEEeCC
Q 016668 295 ASVVADPFK-YCDVVTTTTHKSLRGPR-----G-GMIFFKKD 329 (385)
Q Consensus 295 ~g~~~~p~~-gaDiv~~S~hK~l~Gpr-----g-G~I~~~~~ 329 (385)
...|-+ ++|++++|.||+|.+|. | |++.+++.
T Consensus 674 ---l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~ 712 (939)
T TIGR00461 674 ---LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH 712 (939)
T ss_pred ---CCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh
Confidence 224444 89999999999987443 3 88888874
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=127.23 Aligned_cols=246 Identities=19% Similarity=0.122 Sum_probs=153.9
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC--CCCcceeecCCc-HHHHHHHHH
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSG-SPANFEVYT 186 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~--~~~~~~V~~~sG-s~A~~~a~~ 186 (385)
+.-.+++.+.+|+...+......||..+ .|.. . +++.++++++-+. .--.-.|..++| ++|+..++.
T Consensus 75 ~~~~ts~~a~~Av~~al~Sgk~N~Yaps---~G~~---~----AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~ 144 (447)
T KOG0259|consen 75 PCFRTSQEAEQAVVDALRSGKGNGYAPS---VGIL---P----ARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAIS 144 (447)
T ss_pred ccccCCHHHHHHHHHHHhcCCCCCcCCc---cccH---H----HHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHH
Confidence 4556799999998877765544565542 2332 2 3444555533221 000024556666 579999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP-- 263 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~-- 263 (385)
+|.+||-.||++.|. ++-|- + .+...++ ++.+|++-++ ++.||++.+|.++.+ ++..|++..|+||
T Consensus 145 ~LA~p~aNILlPrPG---fp~Y~--~---~a~~~~l--EVR~ydlLPe~~weIDL~~veal~DE-NT~AivviNP~NPcG 213 (447)
T KOG0259|consen 145 SLANPGANILLPRPG---FPLYD--T---RAIYSGL--EVRYYDLLPEKDWEIDLDGVEALADE-NTVAIVVINPNNPCG 213 (447)
T ss_pred HhcCCCCceecCCCC---CchHH--H---hhhhcCc--eeEeecccCcccceechHHHHHhhcc-CeeEEEEeCCCCCCc
Confidence 999999999999874 33221 0 2234555 4455555544 569999999999976 6777766667666
Q ss_pred CCC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----CCc-EEEECCCccC--ccccEEEEEEeCCCCch
Q 016668 264 RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCD-VVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (385)
Q Consensus 264 ~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~----gaD-iv~~S~hK~l--~GprgG~I~~~~~~~~~ 333 (385)
... -+++|+++|+++|+.+|.|+.+ -.+++++....|+. -+- +.+++.+|-+ +|||-|||+.++..-.+
T Consensus 214 nVys~~HL~kiae~A~klgi~vIaDEVY-~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf 292 (447)
T KOG0259|consen 214 NVYSEDHLKKIAETAKKLGIMVIADEVY-GHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVF 292 (447)
T ss_pred ccccHHHHHHHHHHHHHhCCeEEehhhc-ceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccc
Confidence 233 3789999999999999999985 45566654444444 222 3578999974 99999999998763211
Q ss_pred hH--HHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHh
Q 016668 334 VE--LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSA 380 (385)
Q Consensus 334 ~~--~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~ 380 (385)
.+ ..+.+.. |.....+|..-.-+|+-.-|.+.- +||=++...++
T Consensus 293 ~~~~~~q~~~~--~~~~~~~p~TiiQ~AlP~IL~kTp-~efF~k~~~~l 338 (447)
T KOG0259|consen 293 RDTKVVQGIKN--FLDIIPGPATIIQGALPDILEKTP-EEFFDKKLSFL 338 (447)
T ss_pred cchHHHHHHHH--HHhccCCccHhHHHHhHHHHHhCh-HHHHHHHHHHH
Confidence 11 1112211 222334677677777776666543 34434444443
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-13 Score=147.29 Aligned_cols=164 Identities=21% Similarity=0.203 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh----ccCCC----EEeecCCCCCccccCCcccccccccc
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----LKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSG 219 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al----l~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~ 219 (385)
+++...++|+++++|.+. +.+++.+|+.|+++.+.++ .++|| +|++++..|++++. .+.+
T Consensus 542 ~~i~e~q~~l~eltG~d~----~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~--------sa~~ 609 (954)
T PRK05367 542 ELIDQLEAWLAEITGYDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPA--------SAVM 609 (954)
T ss_pred HHHHHHHHHHHHHHCCCC----EEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHH--------HHHH
Confidence 566667899999999986 5677777888886665544 36776 58888766655432 3456
Q ss_pred CcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCC-CC-CCCHHHHHHHHHHcCcEEEEecccccccccc
Q 016668 220 TSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAY-PR-DFDYPRMRQIADAVGALLMMDMAHISGLVAA 295 (385)
Q Consensus 220 ~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~-~~-~~dl~~I~~ia~~~ga~livD~ah~~Gli~~ 295 (385)
.|..+..++ .+ .++.+|+++|++.++.+ ++.+|++.++++ +. ..|+++|+++||++|+++++|++|..+++.
T Consensus 610 ~G~~vv~v~--~d-~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~- 685 (954)
T PRK05367 610 AGMKVVVVA--CD-ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVG- 685 (954)
T ss_pred CCCEEEEEC--CC-CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccC-
Confidence 676655555 44 35899999999998654 345555555443 43 368999999999999999999999766542
Q ss_pred CcccCCCC-CCcEEEECCCccCccccE------EEEEEeCC
Q 016668 296 SVVADPFK-YCDVVTTTTHKSLRGPRG------GMIFFKKD 329 (385)
Q Consensus 296 g~~~~p~~-gaDiv~~S~hK~l~Gprg------G~I~~~~~ 329 (385)
+..|.+ |+|++++|+||||.+|.| |++.+++.
T Consensus 686 --l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~ 724 (954)
T PRK05367 686 --LARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH 724 (954)
T ss_pred --CCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc
Confidence 223444 899999999999865553 57777763
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-14 Score=137.86 Aligned_cols=170 Identities=15% Similarity=0.154 Sum_probs=118.2
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCC-CEEeecCCCCCccccCCccccccccccCcceEEEEecc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~ 230 (385)
.++++++.+|++.+ +|.+++|+ +++..++.++++|| |+|++++|.|+.+. ..+...|..+..++
T Consensus 62 l~~~~a~~~g~~~~----~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~--------~~~~~~G~~~~~v~-- 127 (351)
T PRK01688 62 VIENYAAYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS--------VSAETIGVEIRTVP-- 127 (351)
T ss_pred HHHHHHHHhCCCHH----HEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH--------HHHHHcCCEEEEee--
Confidence 34568888999874 57777776 49999999999997 99999988765432 12345677555554
Q ss_pred ccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC-CC
Q 016668 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-YC 305 (385)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~-ga 305 (385)
++ +++.+|++++++.+ . ++|+|+++.++|| ...+.+++.++++.. +++|++|+++ ..+.........+. +.
T Consensus 128 ~~-~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay-~~f~~~~s~~~~~~~~~ 203 (351)
T PRK01688 128 TL-DNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAY-IEFCPQASLAGWLAEYP 203 (351)
T ss_pred cC-CCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECch-hhcCCCCChHHHHhhCC
Confidence 44 34789999999887 3 7899998888876 566766766666532 6899999997 33331110001112 23
Q ss_pred c-EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCC
Q 016668 306 D-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFP 346 (385)
Q Consensus 306 D-iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp 346 (385)
. +++.|++|++ +|.|.|++++++ ++.+.+.....+
T Consensus 204 n~iv~rSfSK~~glaGlRiGy~i~~~------~~i~~l~~~~~~ 241 (351)
T PRK01688 204 HLVILRTLSKAFALAGLRCGFTLANE------EVINLLLKVIAP 241 (351)
T ss_pred CEEEEecchHhhcCHHHHHhHHhCCH------HHHHHHHhccCC
Confidence 4 6889999986 578889999877 677777665433
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=131.25 Aligned_cols=178 Identities=20% Similarity=0.197 Sum_probs=116.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCC----cceeecCCcHHHHHHHHHHhcc--------CC-----CEEeecCCCCCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAILK--------PH-----DRIMGLDLPHGG 204 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~----~~~V~~~sGs~A~~~a~~all~--------pG-----D~Vl~~~~~~gg 204 (385)
..+...++|+.+.+|++++||.+.... +.-+++++||.||+.++.+.-+ .| .-+++.+. .+
T Consensus 73 ~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~--~a 150 (373)
T PF00282_consen 73 ASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSE--QA 150 (373)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEET--TS
T ss_pred cccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccc--cc
Confidence 456778999999999999999983210 2356778889999888755421 12 22333321 24
Q ss_pred cccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc--C---CcEEEE--cCCCCCCCCCHHHHHHHHHH
Q 016668 205 HLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--R---PKLIIA--GASAYPRDFDYPRMRQIADA 277 (385)
Q Consensus 205 h~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~---pklIi~--~~s~~~~~~dl~~I~~ia~~ 277 (385)
|.+. .+.+.+.|..+..++ +++ ++.+|+++|++.+++. + |-+|+. |.+..+..-|+++|+++|++
T Consensus 151 H~S~-----~Kaa~~lGlg~~~I~--~~~-~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~ 222 (373)
T PF00282_consen 151 HYSI-----EKAARILGLGVRKIP--TDE-DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEK 222 (373)
T ss_dssp -THH-----HHHHHHTTSEEEEE---BBT-TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHH
T ss_pred ccHH-----HHhcceeeeEEEEec--CCc-chhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccc
Confidence 5442 245678888766665 653 6899999999988643 1 323333 45567778899999999999
Q ss_pred cCcEEEEeccccccccccCccc---CCCCCCcEEEECCCccCccccE-EEEEEeCC
Q 016668 278 VGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 278 ~ga~livD~ah~~Gli~~g~~~---~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~ 329 (385)
+++|+++|+|++.......... .-++.+|-++.++||++..|-+ |+++++++
T Consensus 223 ~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~ 278 (373)
T PF00282_consen 223 YNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDK 278 (373)
T ss_dssp CT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSG
T ss_pred cceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecc
Confidence 9999999999753222222211 1123789999999999988854 88888886
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=148.65 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc-------C-CCEEeecCCCCCccccCCccccccc
Q 016668 145 YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-------P-HDRIMGLDLPHGGHLSHGFMTPKRR 216 (385)
Q Consensus 145 ~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~-------p-GD~Vl~~~~~~ggh~s~~~~~~~~~ 216 (385)
+.+.+.+ .++++++++|.+. +.+++.+|+.|++++++++-. + .++|+++...|+.++. .
T Consensus 541 ~lq~i~e-lq~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpa--------s 607 (954)
T PRK12566 541 YRAMIDE-LEAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPA--------S 607 (954)
T ss_pred HHHHHHH-HHHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHH--------H
Confidence 3444544 3578999999998 589999999999888888632 3 4577887766655432 2
Q ss_pred cccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCc--EEEEcCCCC-C-CCCCHHHHHHHHHHcCcEEEEeccccccc
Q 016668 217 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK--LIIAGASAY-P-RDFDYPRMRQIADAVGALLMMDMAHISGL 292 (385)
Q Consensus 217 ~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pk--lIi~~~s~~-~-~~~dl~~I~~ia~~~ga~livD~ah~~Gl 292 (385)
+...|.++..++ .| ++|.+|+++|++.+++.+++ +|++.++++ + ...|+++|+++||++|+++++|++|..++
T Consensus 608 a~~~GieVv~Vp--~D-~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~ 684 (954)
T PRK12566 608 AQMAGMRVVIVE--CD-PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQ 684 (954)
T ss_pred HHHCCCEEEEec--cC-CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhc
Confidence 345676555555 55 47899999999999744454 444444443 3 44569999999999999999999997655
Q ss_pred cccCcccCCCC-CCcEEEECCCccCccccE
Q 016668 293 VAASVVADPFK-YCDVVTTTTHKSLRGPRG 321 (385)
Q Consensus 293 i~~g~~~~p~~-gaDiv~~S~hK~l~Gprg 321 (385)
.. ...|-+ |+||+++++||||.+|+|
T Consensus 685 ~~---l~~Pg~~GADi~~~s~HKtf~~P~G 711 (954)
T PRK12566 685 VG---LARPADIGADVSHMNLHKTFCIPHG 711 (954)
T ss_pred cC---CCChhhcCCCEEEecCCcccCcCcc
Confidence 42 234455 999999999999988876
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-13 Score=136.14 Aligned_cols=176 Identities=16% Similarity=0.126 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcC----CCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccc-cCc
Q 016668 148 ELETLCQKRALAAFN----LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTS 221 (385)
Q Consensus 148 ~le~~~~~~la~lfg----~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~-~~g 221 (385)
.|++..++.+.+.+| ++++ +|..++|+ .|+..++.++++|||.|+++.|.|+++.. .+. ..|
T Consensus 99 ~LR~aiA~~l~~~~~~~~~v~p~----~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~--------~~~~~~g 166 (447)
T PLN02607 99 SFRQAMASFMEQIRGGKARFDPD----RIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDR--------DLRWRTG 166 (447)
T ss_pred HHHHHHHHHHHHhcCCCCCcCHH----HeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCC
Confidence 787777888888877 3443 46667765 59888999999999999999998776532 122 345
Q ss_pred ceEEEEeccccCC-CCCCCHHHHHHHhhh-----cCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccc
Q 016668 222 IYFESMPYRLDES-TGLVDYDMLEKTAIL-----FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 222 ~~~~~i~~~~~~~-~~~iD~d~le~~i~~-----~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~ 290 (385)
. ++++++.+++ ++.+|++++++.++. .++|+|+++.|+||. ..+ +++|.++|+++|+.||+|+++ .
T Consensus 167 ~--~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiY-a 243 (447)
T PLN02607 167 V--KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIY-S 243 (447)
T ss_pred c--EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccc-c
Confidence 4 4455545533 346999999988754 367888888888873 444 788899999999999999996 4
Q ss_pred cccccCc-ccCCC------C--C-Cc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 291 GLVAASV-VADPF------K--Y-CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 291 Gli~~g~-~~~p~------~--g-aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+.++.+. +++.. + + .+ +++.|++|.| +|.|.|++++.++ ++...+...
T Consensus 244 ~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~-----~l~~~~~~~ 305 (447)
T PLN02607 244 GSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYND-----KVVTTARRM 305 (447)
T ss_pred ccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCH-----HHHHHHHHH
Confidence 4444321 22211 1 1 22 4678999987 7889999998543 565555443
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=142.01 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCC----cceeecCCcHHHHHHHHHHhcc-----C-----CC-EEeecCCCCCccccC
Q 016668 144 EYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAILK-----P-----HD-RIMGLDLPHGGHLSH 208 (385)
Q Consensus 144 ~~~~~le~~~~~~la~lfg~~~~~~----~~~V~~~sGs~A~~~a~~all~-----p-----GD-~Vl~~~~~~ggh~s~ 208 (385)
+...++|+.+.+|+++++|.+...| +.-+++++||.||+.++.+.-+ . .. .|++.+. +|.|.
T Consensus 118 p~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~---aH~Sv 194 (490)
T PLN02880 118 PAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQ---THSAL 194 (490)
T ss_pred cccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCC---chHHH
Confidence 3455899999999999999986421 1234567789999887755421 0 12 3333432 35442
Q ss_pred CccccccccccCcce---EEEEeccccC-CCCCCCHHHHHHHhhhc-----CCcEEEE--cCCCCCCCCCHHHHHHHHHH
Q 016668 209 GFMTPKRRVSGTSIY---FESMPYRLDE-STGLVDYDMLEKTAILF-----RPKLIIA--GASAYPRDFDYPRMRQIADA 277 (385)
Q Consensus 209 ~~~~~~~~~~~~g~~---~~~i~~~~~~-~~~~iD~d~le~~i~~~-----~pklIi~--~~s~~~~~~dl~~I~~ia~~ 277 (385)
. +.+...|.. +..++ +|. +++.+|+++|++.+++. .|-+|+. |.+.++...|+++|+++|++
T Consensus 195 ~-----Kaa~~lGlg~~~v~~Vp--~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~ 267 (490)
T PLN02880 195 Q-----KACQIAGIHPENCRLLK--TDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKS 267 (490)
T ss_pred H-----HHHHHcCCCHHHEEEee--cCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHH
Confidence 1 355667764 44555 553 35689999999998643 2555554 45567778899999999999
Q ss_pred cCcEEEEeccccccccccCcccCC---CCCCcEEEECCCccCccccE-EEEEEeCC
Q 016668 278 VGALLMMDMAHISGLVAASVVADP---FKYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 278 ~ga~livD~ah~~Gli~~g~~~~p---~~gaDiv~~S~hK~l~Gprg-G~I~~~~~ 329 (385)
+|+|+++|+||+.+......+... ++++|.++.++|||+..|.+ |++++++.
T Consensus 268 ~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~ 323 (490)
T PLN02880 268 NGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDR 323 (490)
T ss_pred cCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCH
Confidence 999999999997664432221112 34789999999999988977 78888753
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=131.36 Aligned_cols=218 Identities=24% Similarity=0.301 Sum_probs=159.1
Q ss_pred hccccccCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHH-HHHHHHHHHHHHHHcCCCCCCCcceeecCCc
Q 016668 103 KSLELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI-DELETLCQKRALAAFNLDENKWGVNVQPLSG 177 (385)
Q Consensus 103 ~~l~Liasen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~-~~le~~~~~~la~lfg~~~~~~~~~V~~~sG 177 (385)
..|-++..+||. .|++.++-...+ ..|..|..+.|+.-|+..+ ..|| ..++++-+.++ .+...++
T Consensus 67 k~ilnFcaNnYLGLsshPeii~a~~~al-eeyGaGlssvrfIcGtq~iHk~LE----~kiAqfh~rED-----~ilypsc 136 (417)
T KOG1359|consen 67 KKILNFCANNYLGLSSHPEIINAGQKAL-EEYGAGLSSVRFICGTQDIHKLLE----SKIAQFHGRED-----TILYPSC 136 (417)
T ss_pred cceeeecccccccccCChHHHHHHHHHH-HHhCCCccceeEEecchHHHHHHH----HHHHHHhCCCc-----eEEeccc
Confidence 345556788886 899999877665 5677788899999898744 3444 46888888777 3667788
Q ss_pred HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhh---hcCCcE
Q 016668 178 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI---LFRPKL 254 (385)
Q Consensus 178 s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~---~~~pkl 254 (385)
-.||..++-++++|.|-|+...++|.+-. +| +.+.. . -+++|+-.++..+. +.|-|+
T Consensus 137 fdANag~feail~pedAvfSDeLNhASII-dG-------irLck------r------y~h~dv~~l~~~l~~a~k~r~kl 196 (417)
T KOG1359|consen 137 FDANAGAFEAILTPEDAVFSDELNHASII-DG-------IRLCK------R------YRHVDVFDLEHCLISACKMRLKL 196 (417)
T ss_pred cccchHHHHHhcChhhhhhccccccchhh-hh-------hHHHh------h------hccchhHHHHHHHHHhhhheEEE
Confidence 99999999999999999998888664321 11 11111 1 23456666654443 345678
Q ss_pred EEEcC--CCCCCCCCHHHHHHHHHHcCcEEEEecccccccccc-Cc----ccCCCCCCcEEEECCCccCccccEEEEEEe
Q 016668 255 IIAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV----VADPFKYCDVVTTTTHKSLRGPRGGMIFFK 327 (385)
Q Consensus 255 Ii~~~--s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~----~~~p~~gaDiv~~S~hK~l~GprgG~I~~~ 327 (385)
|+++. |.-+...|+++|.+++++||++|++|++|+.|+... |. .......+|++..++.|.+.|-.||+..++
T Consensus 197 v~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp 276 (417)
T KOG1359|consen 197 VVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGP 276 (417)
T ss_pred EEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCC
Confidence 87764 334566789999999999999999999999887642 21 112222578999999999999999999999
Q ss_pred CCCCchhHHHHHHhhccCCCccCCChHHH
Q 016668 328 KDPVLGVELESAINNAVFPGLQGGPHNHT 356 (385)
Q Consensus 328 ~~~~~~~~~~~~i~~~~fp~~qg~p~~~~ 356 (385)
+ .+.+.+++.-.|.+.++..+..
T Consensus 277 ~------~li~llrqr~RpylFSnslppa 299 (417)
T KOG1359|consen 277 K------PLISLLRQRSRPYLFSNSLPPA 299 (417)
T ss_pred h------hHHHHHHhcCCceeecCCCChh
Confidence 8 6888898888888887655533
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=136.50 Aligned_cols=235 Identities=9% Similarity=-0.005 Sum_probs=138.3
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
-.+++.+...++.|++++...... .. +.+. .+.++.+.+++ +++.++++||++.+ +.+.+.+.|||.++.++
T Consensus 5 ~~f~pGP~~~~~~v~~a~~~~~~~-~~--~~~h---r~~~f~~~~~~-~r~~l~~l~~~~~~-~~v~f~~gs~T~a~~~~ 76 (361)
T TIGR01366 5 GRFGSGPSKVRLEQLQALTTTAAS-LF--GTSH---RQAPVKNLVGR-VREGLAELFSLPDG-YEVILGNGGATAFWDAA 76 (361)
T ss_pred CcccCCCcCCCHHHHHHHHhcCcc-cc--ccCc---CChHHHHHHHH-HHHHHHHHhCCCCC-ceEEEECCchhHHHHHH
Confidence 456788999999999998632100 00 1121 23455555555 89999999999542 21222235588899999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC--CCC
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SAY 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~--s~~ 262 (385)
+.+++.+ +.+++..-+++..+.|.. ....+.+ .+..++++ ....+|. .+. .++|+|++.. +++
T Consensus 77 ~~~l~~~-~~l~i~~G~~~~~~~~~a----~~~~~~~-~~~~~~~~---~~~~~~~-----~~~-~~~~lV~~~h~et~t 141 (361)
T TIGR01366 77 TFGLIEK-KSLHLSFGEFSSKFAKAV----KLAPWLG-EPIIVTAD---PGSAPEP-----QAD-PGVDVIAWAHNETST 141 (361)
T ss_pred HHhcccc-cccEEecCHHHHHHHHHH----HhhhccC-CceEEecC---CCCCCCC-----ccC-CCCCEEEEcccCCcc
Confidence 9999753 232232223322222211 0111122 34444432 1233443 232 3689887653 346
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCC----------
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV---------- 331 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~---------- 331 (385)
|...|+++| ++++|+++++|+++++|.. +-.++.+|++++|.||+|.+|.| ++++.+++..
T Consensus 142 G~~~pi~~I---~~~~g~~~iVDavqs~g~~-----~idv~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~ 213 (361)
T TIGR01366 142 GVAVPVRRP---EGSDDALVVIDATSGAGGL-----PVDIAETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASG 213 (361)
T ss_pred ceecccccc---cccCCCeEEEEcCccccCC-----CCCHHHCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCC
Confidence 788898887 5889999999999987753 22333689999999999877756 3334455310
Q ss_pred ----chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCc
Q 016668 332 ----LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 332 ----~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
.+.++...+....-.+..++|..+.+.++..|++.+...
T Consensus 214 ~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~ 256 (361)
T TIGR01366 214 RWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGN 256 (361)
T ss_pred CCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHc
Confidence 001111111111112445678888899999999988776
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=129.50 Aligned_cols=202 Identities=12% Similarity=0.102 Sum_probs=131.5
Q ss_pred cccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HH
Q 016668 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (385)
Q Consensus 105 l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~ 181 (385)
++|-..+| .+++.+.+++...+.. ..+|+.. +. .++++ .++++++++.+ +|..++|+. ++
T Consensus 25 i~l~~~~n~~~~~~~~~~a~~~~~~~--~~~Y~~~----~~---~~Lr~----aia~~~~v~~~----~I~it~G~~~~i 87 (360)
T PRK07392 25 LDFSASINPLGPPESVIAAIQSALSA--LRHYPDP----DY---RELRL----ALAQHHQLPPE----WILPGNGAAELL 87 (360)
T ss_pred EEeCCcCCCCCCCHHHHHHHHHHHHH--hhcCCCc----CH---HHHHH----HHHHHhCcChh----hEEECCCHHHHH
Confidence 44544444 3678899988766543 2245431 11 24544 45666788874 566777775 88
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC----CCCHHHHHHHhhhcCCcEEEE
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG----LVDYDMLEKTAILFRPKLIIA 257 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~----~iD~d~le~~i~~~~pklIi~ 257 (385)
..++.++ .+||+|++.+|.+.++.. .+...|..+..++ ++.+++ ..|++++++.. .+++++++
T Consensus 88 ~~~~~~l-~~g~~vlv~~P~y~~~~~--------~~~~~g~~~~~v~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 154 (360)
T PRK07392 88 TWAGREL-AQLRAVYLITPAFGDYRR--------ALRAFGATVKELP--LPLDQPSPGLTLRLQTLPPQL--TPNDGLLL 154 (360)
T ss_pred HHHHHHh-CCCCeEEEECCCcHHHHH--------HHHHcCCeEEEEe--cccccCCcccccCHHHHHHhc--cCCCEEEE
Confidence 7777775 478999999987765432 3445676555444 443333 25677776543 25788888
Q ss_pred cCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CCCc--EEEECCCccC--ccccEEEEEEeC
Q 016668 258 GASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCD--VVTTTTHKSL--RGPRGGMIFFKK 328 (385)
Q Consensus 258 ~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~gaD--iv~~S~hK~l--~GprgG~I~~~~ 328 (385)
+.++|| ...+-++|.+++++++. +|+|+++ ..+...+..++.+ +..+ +++.|++|+| +|.|.|++++++
T Consensus 155 ~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y-~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~ 232 (360)
T PRK07392 155 NNPHNPTGKLWSREAILPLLEQFAL-VVVDEAF-MDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHP 232 (360)
T ss_pred eCCCCCCCCCcCHHHHHHHHHHCCE-EEEECch-hhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCH
Confidence 888887 56788999999999985 6669996 4555433222222 2222 6789999987 789999999976
Q ss_pred CCCchhHHHHHHhhcc
Q 016668 329 DPVLGVELESAINNAV 344 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~ 344 (385)
++.+++....
T Consensus 233 ------~~~~~~~~~~ 242 (360)
T PRK07392 233 ------DRLQRWQQWR 242 (360)
T ss_pred ------HHHHHHHhhC
Confidence 5666665443
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-13 Score=132.88 Aligned_cols=241 Identities=15% Similarity=0.113 Sum_probs=151.8
Q ss_pred ccccccCCCCCcHHHHHHHhhHhhccCCCCCCC-CCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHH
Q 016668 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (385)
Q Consensus 104 ~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~-~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~ 182 (385)
.+++.|.+..+|+.|++++...+.+....|..- ...+.+.++. ++-+.+++.++++++++. ++.+.+...|||.++.
T Consensus 8 ~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~-~i~~~~~~~L~~l~~~p~-~y~v~~l~Gsgt~~~e 85 (365)
T PLN02452 8 VFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFL-SIIQKAEADLRELLDIPD-NYEVLFLQGGASTQFA 85 (365)
T ss_pred eEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHH-HHHHHHHHHHHHHhCCCC-CceEEEEeCccHHHHH
Confidence 467889999999999999998876533322111 0112244444 444458899999999854 3546566678889999
Q ss_pred HHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc--CC
Q 016668 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG--AS 260 (385)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~--~s 260 (385)
++...++++||++++.. .|.++..+. +.+...|........+.......+|+++++. ...++.|.+. .+
T Consensus 86 a~~~nl~~~~~~~l~~~---~G~fg~r~~---~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~hnET 156 (365)
T PLN02452 86 AIPLNLCKPGDKADFVV---TGSWSKKAA---KEAKKYCKTNVIASGKDEKYTKIPSVSEWEL---TPDAKFVHICANET 156 (365)
T ss_pred HHHHhcCCCCCeEEEEE---CCHHHHHHH---HHHHHhCCCcEEEecCCCCCCCCCChHHcCC---CCCCcEEEECCCCC
Confidence 99999999999998876 366554432 2233445422222111111122577777532 2246777554 34
Q ss_pred CCCCC-CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 261 AYPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 261 ~~~~~-~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
.+|.. .|++++. ++++++|+++..|.. +-+++..++.++|.||+| ||.| |+++.+++ +.+
T Consensus 157 stGv~~~~~~~i~------~~~lvVDa~Ss~g~~-----pidv~~~~v~~~saqK~l-GP~Gl~~v~vr~~------~l~ 218 (365)
T PLN02452 157 IHGVEFKDYPDVG------NVPLVADMSSNFLSK-----PVDVSKYGVIYAGAQKNV-GPSGVTIVIIRKD------LIG 218 (365)
T ss_pred CCcEecCcccccC------CCeEEEECCccccCc-----ccCHHHcCEEEEeccccc-CCCCeEEEEEcHH------HHh
Confidence 56653 6666654 389999999876632 233334455668999988 7998 88888874 332
Q ss_pred HHhhcc-----------CCCccCCChHHHHHHHHHHHHHhhCc-hHH
Q 016668 339 AINNAV-----------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFK 373 (385)
Q Consensus 339 ~i~~~~-----------fp~~qg~p~~~~iaala~Al~e~~~~-~~~ 373 (385)
++.... .....++|..+.|.++..+|+.+.++ ++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~ 265 (365)
T PLN02452 219 NARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLK 265 (365)
T ss_pred hcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHH
Confidence 221110 01123589999999999999998875 443
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=128.86 Aligned_cols=206 Identities=22% Similarity=0.241 Sum_probs=144.3
Q ss_pred ccccccCCCCC--cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCCCCCcceeecCCcHH-
Q 016668 104 SLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSP- 179 (385)
Q Consensus 104 ~l~Liasen~~--s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg-~~~~~~~~~V~~~sGs~- 179 (385)
-++|.+.||+. |+.+.+++...+. ..+-||.. . ..+++ +.+++.+| .+.+ +|....|+.
T Consensus 24 ~i~LssNenP~gp~~~~~~~~~~~~~--~~~rYPd~------~-~~~l~----~a~a~~~~~~~~~----~V~~gnGsde 86 (356)
T COG0079 24 IIKLSSNENPYGPPPKVIEAIRAALD--KLNRYPDP------D-YRELR----AALAEYYGVVDPE----NVLVGNGSDE 86 (356)
T ss_pred ceeecCCCCCCCCCHHHHHHHHHHHH--hhccCCCC------c-HHHHH----HHHHHHhCCCCcc----eEEEcCChHH
Confidence 46777888886 4788888776553 11235542 1 12343 45788889 6653 677788875
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
.+..++.+++.|||+|+++.|.++.|.. .+...|..+..++ +++ +.+|++.+.+.+.+ ++++|++++
T Consensus 87 ~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~--------~a~~~g~~~~~v~--~~~--~~~d~~~~~~~~~~-~~~lv~i~n 153 (356)
T COG0079 87 LIELLVRAFVEPGDTVLIPEPTFSMYEI--------AAQLAGAEVVKVP--LKE--FRLDLDAILAAIRD-KTKLVFLCN 153 (356)
T ss_pred HHHHHHHHhhcCCCEEEEcCCChHHHHH--------HHHhcCCeEEEec--ccc--cccCHHHHHHhhhc-CCCEEEEeC
Confidence 8888889999999999999998765432 2345676555555 442 78999999998876 799999999
Q ss_pred CCCC--CCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCCCCc--EEEECCCccC--ccccEEEEEEeCCCC
Q 016668 260 SAYP--RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFKYCD--VVTTTTHKSL--RGPRGGMIFFKKDPV 331 (385)
Q Consensus 260 s~~~--~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~gaD--iv~~S~hK~l--~GprgG~I~~~~~~~ 331 (385)
|+|| ...+.++|.+++... +.+|++|+|+ ..+...... ..+...+ +++-|++|.| +|.|.|+.++++
T Consensus 154 PNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY-~eF~~~~~~-~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~--- 228 (356)
T COG0079 154 PNNPTGTLLPREELRALLEALPEGGLVVIDEAY-IEFSPESSL-ELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANP--- 228 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCch-hhcCCchhh-hhccCCCCEEEEEecHHhhhcchhceeeccCCH---
Confidence 9987 456777777777654 8899999996 343321100 1111233 6788999975 889999988887
Q ss_pred chhHHHHHHhhccCCC
Q 016668 332 LGVELESAINNAVFPG 347 (385)
Q Consensus 332 ~~~~~~~~i~~~~fp~ 347 (385)
++.+.+++..-|.
T Consensus 229 ---~~i~~l~~vr~p~ 241 (356)
T COG0079 229 ---ELIAALNKVRPPF 241 (356)
T ss_pred ---HHHHHHHHhcCCC
Confidence 7888888776555
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=130.65 Aligned_cols=227 Identities=15% Similarity=0.102 Sum_probs=132.0
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh----c
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----L 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al----l 189 (385)
-+|.|.+++...+......+ . .+ .++...+ ..++++++++.+. .+.+.||++|+..++.++ .
T Consensus 48 ~~p~v~~a~~~~~~~~~~~~---~-~~-~~~~~~~----la~~l~~~~~~~~-----v~~~~sGseA~~~al~~ar~~~~ 113 (389)
T PRK01278 48 AHPHLVEALKEQAEKLWHVS---N-LY-RIPEQER----LAERLVENSFADK-----VFFTNSGAEAVECAIKTARRYHY 113 (389)
T ss_pred CCHHHHHHHHHHHHhcCccc---c-cc-CChHHHH----HHHHHHhhCCCCE-----EEEcCCcHHHHHHHHHHHHHHHH
Confidence 36888888877765322111 1 11 2232223 3456777776543 366789999999998776 5
Q ss_pred cCCC----EEeecCCCCCccccCCccccccccccCcceEEEEec-cccCC---CCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 190 KPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDES---TGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 190 ~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~-~~~~~---~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
++|| +|++.++.+.|+.. + .....+.......+ +..++ -...|++++++.++. ++++|++++.+
T Consensus 114 ~~G~~~r~~vi~~~~~yhg~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~avivep~~ 185 (389)
T PRK01278 114 GKGHPERYRIITFEGAFHGRTL-A------TIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP-NTAAILIEPIQ 185 (389)
T ss_pred hcCCCCCCEEEEECCCcCCCcH-H------HHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC-CeEEEEEeccc
Confidence 6787 89988865433211 0 11111210000001 01100 012689999998864 78999988654
Q ss_pred CCC------CCCHHHHHHHHHHcCcEEEEeccccccccccCccc-C-CCC-CCcEEEECCCccC-ccccEEEEEEeCCCC
Q 016668 262 YPR------DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA-D-PFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPV 331 (385)
Q Consensus 262 ~~~------~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~-~-p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~~ 331 (385)
++. ..++++|+++|+++|++||+|++|. |+...|... . .+. ..|++ |++|.+ +|++.|++++++
T Consensus 186 ~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~--- 259 (389)
T PRK01278 186 GEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKLFAHEWAGVTPDIM--AVAKGIGGGFPLGACLATE--- 259 (389)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcceeecccCCCCCEE--EEehhccCCcceEEEEEcH---
Confidence 321 2268999999999999999999984 654333211 1 111 24554 678998 567889999887
Q ss_pred chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 332 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 332 ~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.+.+.........+ .++...++...+++.+.++++
T Consensus 260 ---~~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~l~~~~~ 296 (389)
T PRK01278 260 ---EAAKGMTPGTHGSTYG-GNPLAMAVGNAVLDVILAPGF 296 (389)
T ss_pred ---HHHhccCCCCCCCCCC-ccHHHHHHHHHHHHHHhhhHH
Confidence 5666665443333333 344444555556766544444
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=134.40 Aligned_cols=164 Identities=21% Similarity=0.241 Sum_probs=115.4
Q ss_pred HHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCC-CEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 155 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
+.+++++|++.+ +|.+++|+ +++..++.++++|| |+|++.+|.+..+.. .+...|..+..++ ++
T Consensus 67 ~aia~~~~~~~~----~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~--------~~~~~g~~v~~v~--~~ 132 (354)
T PRK04635 67 NAYSAYAGVAPE----QILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAI--------SAETFNVGVKALP--LT 132 (354)
T ss_pred HHHHHHhCcCHH----HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHH--------HHHHcCCEEEEEe--cC
Confidence 346678899875 57777877 49999999999999 899999887654321 2345676555555 54
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHc-CcEEEEeccccccccccCcccCCCC-CCc-E
Q 016668 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFK-YCD-V 307 (385)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~-ga~livD~ah~~Gli~~g~~~~p~~-gaD-i 307 (385)
+++.+|.+.+++ + .++|+|+++.++|| ...+.+++.++++.. +++|++|+++. .+........... ... +
T Consensus 133 -~~~~~~~~~l~~-~--~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~-~~~~~~s~~~~~~~~~~~i 207 (354)
T PRK04635 133 -ADYQLPLDYIEQ-L--DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYI-EFCPEYSVADLLASYPNLV 207 (354)
T ss_pred -CCCCCCHHHHHh-c--cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchH-hhccCcchHHHHhhCCCEE
Confidence 246789998873 3 37899999888876 577889999988764 79999999974 3321110111111 122 6
Q ss_pred EEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 308 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 308 v~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
++.|+||++ +|.|.|+++.++ ++.+.+...
T Consensus 208 v~~S~SK~~~l~GlRlG~~i~~~------~~~~~l~~~ 239 (354)
T PRK04635 208 VLRTLSKAFALAGARCGFTLANE------ELIEILMRV 239 (354)
T ss_pred EEechHHHhhhhHHHHhhhhCCH------HHHHHHHhh
Confidence 789999996 688889999887 677777654
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=129.12 Aligned_cols=239 Identities=17% Similarity=0.178 Sum_probs=156.1
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc-C
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-P 191 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~-p 191 (385)
.+|+..+++|.. |...|+|.+.+.+||+ .++++||.++ .+.+.+|..++..++..+++ |
T Consensus 54 apS~~m~aAM~~-----------GDD~Y~gdpSv~~Lee----~vael~G~E~-----alpthqGRgaE~Il~~~~~~~~ 113 (467)
T TIGR02617 54 AVTQSMQAAMMR-----------GDEAYSGSRSYYALAE----SVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKR 113 (467)
T ss_pred CCCHHHHHHHHc-----------CCcccccCchHHHHHH----HHHHHhCCce-----EEECCCCchHHHHHHHhhcccc
Confidence 468888888763 2223667777778886 5778999987 36678999999999999998 8
Q ss_pred CCEEeecCC----CCCccccCCccccccccccCcceEEEEec------ccc-CCCCCCCHHHHHHHhhhcCC---cEE--
Q 016668 192 HDRIMGLDL----PHGGHLSHGFMTPKRRVSGTSIYFESMPY------RLD-ESTGLVDYDMLEKTAILFRP---KLI-- 255 (385)
Q Consensus 192 GD~Vl~~~~----~~ggh~s~~~~~~~~~~~~~g~~~~~i~~------~~~-~~~~~iD~d~le~~i~~~~p---klI-- 255 (385)
||++.+-.. .|..|+.- ....+.+.|.....++. .++ +..|.+|+++|++.+++..+ -.+
T Consensus 114 g~e~g~~~~~~~v~hn~~fet----t~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~ 189 (467)
T TIGR02617 114 EQEKGLDRSKMVAFSNYFFDT----TQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVA 189 (467)
T ss_pred cccccccccccccceEEEEec----chHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeee
Confidence 998885443 23222221 01123455654333221 111 23578999999999975322 222
Q ss_pred -EEcCCCCCCCC---CHHHHHHHHHHcCcEEEEecccccc-c--------cccCcccCC-----CCCCcEEEECCCccCc
Q 016668 256 -IAGASAYPRDF---DYPRMRQIADAVGALLMMDMAHISG-L--------VAASVVADP-----FKYCDVVTTTTHKSLR 317 (385)
Q Consensus 256 -i~~~s~~~~~~---dl~~I~~ia~~~ga~livD~ah~~G-l--------i~~g~~~~p-----~~gaDiv~~S~hK~l~ 317 (385)
+++++..|.++ +++++.++|+++|+.++.|+|-..- . .+.+.-+.. +.++|.++.|++|-+.
T Consensus 190 tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglg 269 (467)
T TIGR02617 190 TITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAM 269 (467)
T ss_pred eEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCC
Confidence 23333344444 4678889999999999999975432 1 122221111 2589999999999998
Q ss_pred cccEEEEEEeCCCCchhHHHHHHhhcc--CC--CccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 318 GPRGGMIFFKKDPVLGVELESAINNAV--FP--GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 318 GprgG~I~~~~~~~~~~~~~~~i~~~~--fp--~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
.|-||+++++++. +.++.++....+ +- .+.||..-.-+.|+|+.|.|...++|..|+-
T Consensus 270 ApvGg~Lag~d~~--~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri 331 (467)
T TIGR02617 270 VPMGGLLCFKDDS--FFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI 331 (467)
T ss_pred CcccceEEecchh--HHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHH
Confidence 8999999999861 002333332221 11 2367888899999999999999999966653
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-12 Score=126.68 Aligned_cols=198 Identities=14% Similarity=0.129 Sum_probs=121.4
Q ss_pred cccccCCC--CCcHHHHHHHhhHhhccCC----CCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH
Q 016668 105 LELIASEN--FTSRAVMEAVGSCLTNKYS----EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178 (385)
Q Consensus 105 l~Liasen--~~s~~V~~al~s~l~~~y~----~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs 178 (385)
++|-..++ .+++.|.+++...+.+... .+|.. ..|.+ .+++.+++++.+ .+++.+ +|.+++|+
T Consensus 36 i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p---~~g~~---~lr~aia~~~~~-~~~~~d----~I~it~Ga 104 (402)
T TIGR03542 36 IRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGP---EQGYP---FLREAIAENDYR-GRIDPE----EIFISDGA 104 (402)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCC---CCCCH---HHHHHHHHHHHh-cCCCHH----HEEECCCc
Confidence 44543343 3688899998877654211 12321 12444 566555444322 156653 56777776
Q ss_pred H-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcc---------eEEEEeccccCC-CCCCCHHHHHHHh
Q 016668 179 P-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI---------YFESMPYRLDES-TGLVDYDMLEKTA 247 (385)
Q Consensus 179 ~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~---------~~~~i~~~~~~~-~~~iD~d~le~~i 247 (385)
. ++.. +..++.|||+|++.+|.|.++.. .....|. +.+.++++.+++ ...+|+++
T Consensus 105 ~~al~~-l~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----- 170 (402)
T TIGR03542 105 KCDVFR-LQSLFGSDNTVAVQDPVYPAYVD--------SNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE----- 170 (402)
T ss_pred HHHHHH-HHHhcCCCCEEEEeCCCCcchHH--------HHHHcCCccccccccccceEEEeecchhhCCCCCccc-----
Confidence 5 6665 46778999999999997765432 2233444 003333334422 23444321
Q ss_pred hhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CC-Cc--EEEECCCccC
Q 016668 248 ILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY-CD--VVTTTTHKSL 316 (385)
Q Consensus 248 ~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~g-aD--iv~~S~hK~l 316 (385)
..++|+|+++.++||+ ..+ +++|.++|+++|++||+|+++ ..+...+..+.++ +. .+ +++.|++|.|
T Consensus 171 -~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~ 248 (402)
T TIGR03542 171 -EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAY-SAFISDPSLPHSIFEIPGAKECAIEFRSFSKTA 248 (402)
T ss_pred -cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchh-hhhccCCCCCcchhhCCCCcccEEEEecCcccc
Confidence 1368999888888873 444 788999999999999999997 4554433222222 22 22 5689999987
Q ss_pred --ccccEEEEEEeCC
Q 016668 317 --RGPRGGMIFFKKD 329 (385)
Q Consensus 317 --~GprgG~I~~~~~ 329 (385)
+|.|.|+++++++
T Consensus 249 g~pGlRiG~~i~~~~ 263 (402)
T TIGR03542 249 GFTGVRLGWTVVPKE 263 (402)
T ss_pred CCCCcceEEEEecHH
Confidence 7889999999874
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=126.87 Aligned_cols=205 Identities=19% Similarity=0.242 Sum_probs=134.8
Q ss_pred cCCCCC--cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHH
Q 016668 109 ASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (385)
Q Consensus 109 asen~~--s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~ 186 (385)
.|+|.+ .|+++++|...-. .+..-|+..+...++|+ +++++||... .+++.|||+||..++.
T Consensus 5 ~SDn~~g~~~~m~eam~~a~~-------~~~~~YG~D~~~~~~e~----~~ae~~g~~a-----~~Fv~sGT~aN~lal~ 68 (342)
T COG2008 5 RSDNVAGPTPEMREALAAANA-------VGDDVYGEDPTTNALEQ----RIAELFGKEA-----ALFVPSGTQANQLALA 68 (342)
T ss_pred ccCccCCCCHHHHHHHHhccc-------cCCCCCCCCHHHHHHHH----HHHHHhCCce-----EEEecCccHHHHHHHH
Confidence 577775 8999999875421 12223655565666654 7899999843 4677899999999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc------CCcEEEEcCC
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RPKLIIAGAS 260 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~------~pklIi~~~s 260 (385)
+.++||+.|++-.. +|.. .-....+.+.+.. ..++. ++..+|.+++|+|+..++.. +|++++.+..
T Consensus 69 ~~~~~~~~vi~~~~---aHi~---~~E~Ga~~~~~~~-~~~~~-~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~ 140 (342)
T COG2008 69 AHCQPGESVICHET---AHIY---TDECGAPEFFGGG-QKLPI-VPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTA 140 (342)
T ss_pred HhcCCCCeEEEecc---ccce---ecccCcHHHHcCC-ceecc-CCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeecc
Confidence 99999999998764 3322 1111233333321 22221 22257899999999977531 2344444332
Q ss_pred -CCCCCCC---HHHHHHHHHHcCcEEEEeccccc-cccccCcccCCCC-CCcEEEECCCccCccccEEEEEEeCCCCchh
Q 016668 261 -AYPRDFD---YPRMRQIADAVGALLMMDMAHIS-GLVAASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGV 334 (385)
Q Consensus 261 -~~~~~~d---l~~I~~ia~~~ga~livD~ah~~-Gli~~g~~~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~ 334 (385)
..|...+ +++|.++||++|+.|+.|+|... .+++.|..-..+. ++|++++.++|.+..|-|.+++++.
T Consensus 141 te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~------ 214 (342)
T COG2008 141 TEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNR------ 214 (342)
T ss_pred CCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCH------
Confidence 2365555 66778899999999999998643 3343341111122 8999999999998777778888887
Q ss_pred HHHHHHhhc
Q 016668 335 ELESAINNA 343 (385)
Q Consensus 335 ~~~~~i~~~ 343 (385)
++.+++++.
T Consensus 215 ~~~~~a~~~ 223 (342)
T COG2008 215 DFAKRARRW 223 (342)
T ss_pred HHHHHHHHH
Confidence 566665543
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=129.02 Aligned_cols=203 Identities=16% Similarity=0.158 Sum_probs=131.1
Q ss_pred cccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HH
Q 016668 105 LELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (385)
Q Consensus 105 l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~ 181 (385)
++|-..+|. +++.+.+++.+.+.. ..+||.. + ..+++ +.++++++++.+ +|.+++|+. ++
T Consensus 22 ~~l~~~~~~~~~p~~~~~a~~~~~~~--~~~Y~~~----~---~~~lr----~~ia~~~~~~~~----~i~it~Ga~~~l 84 (354)
T PRK06358 22 LDFSANINPLGVPESLKQAITENLDK--LVEYPDP----D---YLELR----KRIASFEQLDLE----NVILGNGATELI 84 (354)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHh--hhcCCCc----c---HHHHH----HHHHHHhCCChh----hEEECCCHHHHH
Confidence 455444443 478899998876532 2234431 1 12444 456777888874 566777775 88
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
..++.++ .+ |+|++.+|.++.+.. .+...|..+..++ ++.+ .+.+| +++.+.+.. ++|+|++..|
T Consensus 85 ~~~~~~~-~~-~~v~i~~P~y~~~~~--------~~~~~g~~~~~~~--~~~~~~~~~d-~~~~~~~~~-~~~~v~~~~P 150 (354)
T PRK06358 85 FNIVKVT-KP-KKVLILAPTFAEYER--------ALKAFDAEIEYAE--LTEETNFAAN-EIVLEEIKE-EIDLVFLCNP 150 (354)
T ss_pred HHHHHHh-CC-CcEEEecCChHHHHH--------HHHHcCCeeEEEe--CccccCCCcc-HHHHHhhcc-CCCEEEEeCC
Confidence 8777775 45 688888887654421 2345566544444 4433 34788 666665644 6899887778
Q ss_pred CCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC---CCc--EEEECCCccC--ccccEEEEEEeC
Q 016668 261 AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCD--VVTTTTHKSL--RGPRGGMIFFKK 328 (385)
Q Consensus 261 ~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~---gaD--iv~~S~hK~l--~GprgG~I~~~~ 328 (385)
+||+ ..+ +++|.++|+++|+++|+|+++ ..+...+..++++. ..+ +++.|++|++ +|.|.|+++..+
T Consensus 151 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~ 229 (354)
T PRK06358 151 NNPTGQLISKEEMKKILDKCEKRNIYLIIDEAF-MDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSN 229 (354)
T ss_pred CCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcc-cccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCC
Confidence 8773 443 778888999999999999996 45554432222222 223 6789999996 789999998864
Q ss_pred CCCchhHHHHHHhhcc
Q 016668 329 DPVLGVELESAINNAV 344 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~ 344 (385)
+ ++.+.+....
T Consensus 230 ~-----~~~~~~~~~~ 240 (354)
T PRK06358 230 K-----NLAEKLLQMR 240 (354)
T ss_pred H-----HHHHHHHHhC
Confidence 3 5666666543
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.8e-12 Score=126.64 Aligned_cols=228 Identities=14% Similarity=0.127 Sum_probs=130.4
Q ss_pred cHHHHHHHhhHhhccCC-CCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 115 SRAVMEAVGSCLTNKYS-EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~-~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
+|.|++++...+. ++. .++...+.....+ +...+++++++++|. . .+.++||+.|+..++..+.
T Consensus 62 ~p~v~~A~~~~l~-~~g~~~~~~~~~~~~~~----~~~~l~~~la~~~~~-~-----~~~~~sG~~a~~~ai~~~~~~~~ 130 (402)
T PRK07505 62 HPAIIEGAVDALK-RTGSLHLSSSRTRVRSQ----ILKDLEEALSELFGA-S-----VLTFTSCSAAHLGILPLLASGHL 130 (402)
T ss_pred CHHHHHHHHHHHH-HhCCCCCCccchhhhhH----HHHHHHHHHHHHhCC-C-----EEEECChHHHHHHHHHHHHhccc
Confidence 8999999988775 332 1111111111223 233355678899987 3 3567899999987775432
Q ss_pred cCCCE-EeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCC
Q 016668 190 KPHDR-IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF 266 (385)
Q Consensus 190 ~pGD~-Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~ 266 (385)
.+|+. |++.+. ..|.+. .........+.. +..++. .|++++++.++. +++++++..+++| ...
T Consensus 131 ~~~~~~vi~~~~--~~H~s~---~~~~~~~~~~~~--v~~~~~------~d~~~l~~~~~~-~~~~~vl~~p~~~~G~~~ 196 (402)
T PRK07505 131 TGGVPPHMVFDK--NAHASL---NILKGICADETE--VETIDH------NDLDALEDICKT-NKTVAYVADGVYSMGGIA 196 (402)
T ss_pred CCCCCCEEEEch--hhhHhH---HhhhhhhhcCCe--EEEeCC------CCHHHHHHHHhc-CCCEEEEEecccccCCcC
Confidence 22332 444432 222221 100111112222 233222 489999998854 4677766655554 577
Q ss_pred CHHHHHHHHHHcCcEEEEeccccccccc-cCcc-c-CCCC--CCc--EEEECCCccCccccEEEEEEeCCCCchhHHHHH
Q 016668 267 DYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-A-DPFK--YCD--VVTTTTHKSLRGPRGGMIFFKKDPVLGVELESA 339 (385)
Q Consensus 267 dl~~I~~ia~~~ga~livD~ah~~Gli~-~g~~-~-~p~~--gaD--iv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~ 339 (385)
++++|.++|+++|++||+|++|..+... .|.. . ..+. ..| +++.|++|.+.++ ||+++..++ ++.+.
T Consensus 197 ~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-Gg~~~~~~~-----~~~~~ 270 (402)
T PRK07505 197 PVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-GGVIMLGDA-----EQIEL 270 (402)
T ss_pred CHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-CeEEEeCCH-----HHHHH
Confidence 8999999999999999999998643221 1211 0 1111 123 6788999998654 788776443 67777
Q ss_pred HhhccCCCcc-CCChHHHHHHHHHHHHHhhCchHH
Q 016668 340 INNAVFPGLQ-GGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 340 i~~~~fp~~q-g~p~~~~iaala~Al~e~~~~~~~ 373 (385)
+.....+... ++++...+++...+++.+..+.+.
T Consensus 271 ~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~ 305 (402)
T PRK07505 271 ILRYAGPLAFSQSLNVAALGAILASAEIHLSEELD 305 (402)
T ss_pred HHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcH
Confidence 7654444333 345556666666666544444333
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=127.56 Aligned_cols=238 Identities=20% Similarity=0.216 Sum_probs=165.8
Q ss_pred hccccccCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc
Q 016668 103 KSLELIASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 177 (385)
Q Consensus 103 ~~l~Liasen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G~-~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG 177 (385)
+.+.+..|+.|. .|.|++|+...+ ++|..|-.|-|...|+ .+..+||+ .++++-+-+. .+.++|.
T Consensus 171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl-~~hG~GAGGTRNIsG~s~~hv~LE~----eLA~LHqK~a-----ALlFsSC 240 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHPEVLDAMHDTL-DRHGAGAGGTRNISGHSKHHVRLEA----ELADLHQKEA-----ALLFSSC 240 (570)
T ss_pred CceEEEecCccccccCChHHHHHHHHHH-HHcCCCcCCccccCCCCchhhhHHH----HHHHHhcCcc-----eeeeeee
Confidence 445666777776 899999999887 5676787888887775 45557776 4777777665 3667888
Q ss_pred HHHHHHHHHHh--ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc---CC
Q 016668 178 SPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RP 252 (385)
Q Consensus 178 s~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~---~p 252 (385)
..||-..+..| .-||-+|.....+|. + +. ..++-++. ...-++ +.|+++|+++++.. .|
T Consensus 241 fVANDstLftLak~lpgcei~SD~gNHA---S---MI--~GIrns~v--~K~IFr------HND~~hL~~lL~~~~~svP 304 (570)
T KOG1360|consen 241 FVANDSTLFTLAKKLPGCEIFSDEGNHA---S---MI--QGIRNSRV--PKHIFR------HNDLDHLEQLLQSSPKSVP 304 (570)
T ss_pred eeccchHHHHHHHHCCCcEEeccccchH---H---HH--HHhhhcCC--cceeec------cCCHHHHHHHHHhCCCCCC
Confidence 88999988888 448888887654332 2 11 12222222 112222 45899999998653 47
Q ss_pred cEEEEcC--CCCCCCCCHHHHHHHHHHcCcEEEEecccccccccc---Cc--ccCCCCCCcEEEECCCccCccccEEEEE
Q 016668 253 KLIIAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA---SV--VADPFKYCDVVTTTTHKSLRGPRGGMIF 325 (385)
Q Consensus 253 klIi~~~--s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~---g~--~~~p~~gaDiv~~S~hK~l~GprgG~I~ 325 (385)
|+|.+.. |..+...|+++|.++|++||++.++|+.|+.|+... |. .+..+...|++++++-|.| |--||+|.
T Consensus 305 KivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKaf-GcVGGYIA 383 (570)
T KOG1360|consen 305 KIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAF-GCVGGYIA 383 (570)
T ss_pred ceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhc-ccccceeh
Confidence 8887754 345678899999999999999999999999998753 21 2222336899999999997 67889998
Q ss_pred EeCCCCchhHHHHHHhhccCCCcc-CCChHHHHHHHHHHHHHhhCchHH
Q 016668 326 FKKDPVLGVELESAINNAVFPGLQ-GGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 326 ~~~~~~~~~~~~~~i~~~~fp~~q-g~p~~~~iaala~Al~e~~~~~~~ 373 (385)
... ++.+.+++..--.++ .+..+..+++...|.+....+|.+
T Consensus 384 at~------~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~ 426 (570)
T KOG1360|consen 384 ATR------KLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGR 426 (570)
T ss_pred hhh------hHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhH
Confidence 887 688888765422222 234456666666677766666554
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-12 Score=127.21 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=107.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHcC-CCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCcccccccc-
Q 016668 141 GGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRV- 217 (385)
Q Consensus 141 ~G~~~~~~le~~~~~~la~lfg-~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~- 217 (385)
.|.+ .+++...+++.+..+ .+..++ .+|..++|+ +|+..++.++++|||+|++.+|.|+.+.. .+
T Consensus 44 ~G~~---~lr~~ia~~~~~~~~~~~~~~~-~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~ 111 (388)
T PRK08637 44 QGIP---ELRDLWQEKMLRENPSLSGKKM-SLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKL--------TFN 111 (388)
T ss_pred CCCH---HHHHHHHHHHhccCcccccccc-ceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHH--------HHH
Confidence 4544 566555555544332 222111 135566665 59988999999999999999997655432 11
Q ss_pred ccCcceEEEEeccccCCCCCCCHHHHHHHhh--hcCC-cEEEEcCCCCCC--CCC---HHHHHHHHHH-----cCcEEEE
Q 016668 218 SGTSIYFESMPYRLDESTGLVDYDMLEKTAI--LFRP-KLIIAGASAYPR--DFD---YPRMRQIADA-----VGALLMM 284 (385)
Q Consensus 218 ~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~--~~~p-klIi~~~s~~~~--~~d---l~~I~~ia~~-----~ga~liv 284 (385)
...|..+. ++++..+++.+|++++++.++ ..++ ++++++.++||+ ..+ +++|.++|++ ++++||+
T Consensus 112 ~~~g~~vv--~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~ 189 (388)
T PRK08637 112 TRRGAEIV--TYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVV 189 (388)
T ss_pred HhcCCEEE--EecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 23565444 444532345689999998875 1233 456677778874 333 6677777765 8999999
Q ss_pred eccccccccccCcccCC-C----C-CCcE---EEECCCccC--ccccEEEEEEe
Q 016668 285 DMAHISGLVAASVVADP-F----K-YCDV---VTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 285 D~ah~~Gli~~g~~~~p-~----~-gaDi---v~~S~hK~l--~GprgG~I~~~ 327 (385)
|+++ .++.+.+....+ + + ...+ .+.|++|.+ +|.|.|+++..
T Consensus 190 De~Y-~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 190 DDAY-FGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG 242 (388)
T ss_pred cccc-hhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence 9996 566554421111 1 1 1133 234999964 88999999865
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=129.42 Aligned_cols=177 Identities=20% Similarity=0.154 Sum_probs=119.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCC----cceeecCCcHHHHHHHHHHhcc-----------CCCEEeecCCCCCcccc
Q 016668 143 NEYIDELETLCQKRALAAFNLDENKW----GVNVQPLSGSPANFEVYTAILK-----------PHDRIMGLDLPHGGHLS 207 (385)
Q Consensus 143 ~~~~~~le~~~~~~la~lfg~~~~~~----~~~V~~~sGs~A~~~a~~all~-----------pGD~Vl~~~~~~ggh~s 207 (385)
.+...++|+.+.+|+++++|.+...| +--+++++||+||+.++.+.-+ |.=.|++.+. .|.|
T Consensus 165 sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~---aH~S 241 (539)
T PLN02590 165 SPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQ---THSS 241 (539)
T ss_pred CchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCC---chHH
Confidence 34456899999999999999986311 1235577889999887765421 1112333332 3433
Q ss_pred CCccccccccccCcce---EEEEeccccC-CCCCCCHHHHHHHhhhc-----CCcEEEE--cCCCCCCCCCHHHHHHHHH
Q 016668 208 HGFMTPKRRVSGTSIY---FESMPYRLDE-STGLVDYDMLEKTAILF-----RPKLIIA--GASAYPRDFDYPRMRQIAD 276 (385)
Q Consensus 208 ~~~~~~~~~~~~~g~~---~~~i~~~~~~-~~~~iD~d~le~~i~~~-----~pklIi~--~~s~~~~~~dl~~I~~ia~ 276 (385)
. .+.+...|.. +..++ +|. +++.+|+++|++.+++. .|-+|+. |.+.++..-|+++|+++|+
T Consensus 242 v-----~KAa~ilGlg~~~vr~Vp--~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~ 314 (539)
T PLN02590 242 F-----RKACLIGGIHEENIRLLK--TDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAK 314 (539)
T ss_pred H-----HHHHHHcCCCcccEEEEe--CCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHH
Confidence 2 1455666663 44455 553 35689999999998653 2555543 4566777889999999999
Q ss_pred HcCcEEEEeccccccccccCccc---CCCCCCcEEEECCCccCcccc-EEEEEEeCC
Q 016668 277 AVGALLMMDMAHISGLVAASVVA---DPFKYCDVVTTTTHKSLRGPR-GGMIFFKKD 329 (385)
Q Consensus 277 ~~ga~livD~ah~~Gli~~g~~~---~p~~gaDiv~~S~hK~l~Gpr-gG~I~~~~~ 329 (385)
++|+||++|+|++.......... ..++.+|-++..+|||+..|- +|++++++.
T Consensus 315 ~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~ 371 (539)
T PLN02590 315 KYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDR 371 (539)
T ss_pred HhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCH
Confidence 99999999999854333222211 223478999999999997775 488888774
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=121.80 Aligned_cols=198 Identities=14% Similarity=0.129 Sum_probs=125.9
Q ss_pred hccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-H
Q 016668 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-P 179 (385)
Q Consensus 103 ~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~ 179 (385)
..++|...+| .+++.+++++...+.+. .+||.. .|.+ +++ +.+++++|++.+ +|.+++|+ +
T Consensus 23 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~---~g~~---~lr----~aia~~~~~~~~----~I~it~Ga~~ 86 (349)
T PRK07908 23 GLLDFAVNVRHDTPPEWLRERLAARLGDL--AAYPST---EDER---RAR----AAVAARHGRTPD----EVLLLAGAAE 86 (349)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHhhHh--hcCCCc---cchH---HHH----HHHHHHhCcChh----hEEECCCHHH
Confidence 4466655555 36888999988765432 235441 2322 344 456777898774 56667766 4
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
|+..++. ++||| +++..|.+..+. ..+...|..+..+ ++++ ++.+|++.++ .++|+|++..
T Consensus 87 al~~~~~--l~~~~-viv~~P~y~~~~--------~~~~~~G~~i~~v--~~~~-~~~~d~~~l~-----~~~~~i~l~n 147 (349)
T PRK07908 87 GFALLAR--LRPRR-AAVVHPSFTEPE--------AALRAAGIPVHRV--VLDP-PFRLDPAAVP-----DDADLVVIGN 147 (349)
T ss_pred HHHHHHh--cCCCe-EEEeCCCChHHH--------HHHHHcCCEEEee--ccCc-ccCcChhHhc-----cCCCEEEEcC
Confidence 8877766 67865 555666554321 1334567654444 4553 3678887552 2688988877
Q ss_pred CCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC--CCCc-EEEECCCccC--ccccEEEEEEeCCCCc
Q 016668 260 SAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--KYCD-VVTTTTHKSL--RGPRGGMIFFKKDPVL 332 (385)
Q Consensus 260 s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~--~gaD-iv~~S~hK~l--~GprgG~I~~~~~~~~ 332 (385)
++|| ...+.++|.++|++ +.++|+|++|. .++. +..++.. +..+ +++.|+||++ +|.|.|+++.++
T Consensus 148 p~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~-~~~~-~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~---- 220 (349)
T PRK07908 148 PTNPTSVLHPAEQLLALRRP-GRILVVDEAFA-DAVP-GEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAP---- 220 (349)
T ss_pred CCCCCCCCcCHHHHHHHHhc-CCEEEEECcch-hhcc-CCccccccccCCCEEEEeecccccCCccceeeeeecCH----
Confidence 7776 57788999999975 78899999974 3332 2222211 2224 5678999976 689999999876
Q ss_pred hhHHHHHHhhcc
Q 016668 333 GVELESAINNAV 344 (385)
Q Consensus 333 ~~~~~~~i~~~~ 344 (385)
++.+.+....
T Consensus 221 --~~~~~~~~~~ 230 (349)
T PRK07908 221 --DVLARLTRGR 230 (349)
T ss_pred --HHHHHHHhcC
Confidence 6777776543
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-12 Score=126.54 Aligned_cols=177 Identities=18% Similarity=0.149 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhcc-----CCCEEee-cCCCCCccccCCccccccccccC
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILK-----PHDRIMG-LDLPHGGHLSHGFMTPKRRVSGT 220 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~-----pGD~Vl~-~~~~~ggh~s~~~~~~~~~~~~~ 220 (385)
++++.+++++.+.+|.+-. + -+|.+++|+. |+..++.++++ |||.|++ .+|.+.++...... .. ...
T Consensus 78 ~LR~aia~~~~~~~g~~v~-~-~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~---~~-~~~ 151 (416)
T PRK09440 78 ELIEALAALLNERYGWNIS-P-QNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLE---ED-LFV 151 (416)
T ss_pred HHHHHHHHHHHHHhCCCCC-h-hhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhc---cC-cee
Confidence 6777788888888775431 1 2577788775 88888888885 6999999 68887765431100 00 011
Q ss_pred cceEEEEeccccCC--CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEecccccccc
Q 016668 221 SIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLV 293 (385)
Q Consensus 221 g~~~~~i~~~~~~~--~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli 293 (385)
+.....++ ++.+ ...+|+++++ + ..++++|+++.++||+ ..+ +++|.++|+++++++|+|+++... .
T Consensus 152 ~~~~~~~~--~~~~~~~~~~d~~~l~--~-~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~ 225 (416)
T PRK09440 152 SYRPNIEL--LPEGQFKYHVDFEHLH--I-DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPP-F 225 (416)
T ss_pred eccccccc--ccccccccCCCHHHcc--c-CCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCcccc-C
Confidence 11112223 2222 2468999987 3 3367899888888873 444 678889999999999999997421 1
Q ss_pred ccCc-ccCCCCC-Cc--EEEECCCcc-CccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 294 AASV-VADPFKY-CD--VVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 294 ~~g~-~~~p~~g-aD--iv~~S~hK~-l~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
... ....... .+ |++.|++|+ ++|.|.|++++++ ++.+++...
T Consensus 226 -~~~~~~~~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~~~------~l~~~~~~~ 273 (416)
T PRK09440 226 -PGIIFSEATPLWNPNIILCMSLSKLGLPGVRCGIVIADE------EIIEALSNM 273 (416)
T ss_pred -CCcchhhcCccccCCeEEEecccccCCCcceEEEEeCCH------HHHHHHHHH
Confidence 110 0010011 12 678999997 4889999999877 566666544
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-11 Score=122.56 Aligned_cols=218 Identities=16% Similarity=0.123 Sum_probs=131.6
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~---- 190 (385)
.|.|.+++.+.+.. +..+.+. + -++...++| +++++++|.+. .+.++||++|+..++..+..
T Consensus 59 ~~~i~~a~~~~~~~-~~~~~~~---~-~~~~~~~l~----~~l~~~~~~~~-----~~~~~SGs~A~e~al~~a~~~~~~ 124 (401)
T PRK00854 59 HPKILAAMVEQAGR-LTLTSRA---F-RNDQLAPLY----EELAALTGSHK-----VLPMNSGAEAVETAIKAVRKWGYE 124 (401)
T ss_pred CHHHHHHHHHHHhh-ccccccc---c-CCHHHHHHH----HHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHHh
Confidence 68888888777643 3222211 1 133333444 46788888754 46788999999999988742
Q ss_pred -----CC-CEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCCCCCCCHHHHHHHhhhcCC
Q 016668 191 -----PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDESTGLVDYDMLEKTAILFRP 252 (385)
Q Consensus 191 -----pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~~~~iD~d~le~~i~~~~p 252 (385)
+| ++|++.+-.+ ||.... .+...+ ..+..++ ..|++++++.+.+ ++
T Consensus 125 ~~g~~~~~~~vi~~~~~~-----HG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~le~~i~~-~~ 188 (401)
T PRK00854 125 VKGVPEGQAEIIVCADNF-----HGRTLS--IVGFSTDPDARGGFGPFTPGFRVVP--------FGDAEALEAAITP-NT 188 (401)
T ss_pred ccCCCCCCceEEEECCCc-----CCccHH--HHhccCCccccccCCCCCCCeEEeC--------CCCHHHHHHHhCC-Ce
Confidence 23 6777766432 332100 000000 0111111 3589999999864 78
Q ss_pred cEEEEcCCCCC--CCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCcc--ccE
Q 016668 253 KLIIAGASAYP--RDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG--PRG 321 (385)
Q Consensus 253 klIi~~~s~~~--~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~G--prg 321 (385)
++|+++++.++ ...+ +++|+++|+++|+++|+|++|. |+...|... .... ..|+++++ |+|.| +++
T Consensus 189 ~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~i 265 (401)
T PRK00854 189 VAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-GLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPV 265 (401)
T ss_pred EEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCchHhHHhhcCCCCCEEEec--ccccCCccCe
Confidence 99999877653 3343 9999999999999999999995 654433211 1122 46887764 99843 478
Q ss_pred EEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
|++++++ ++.+.+.........++ ++...++...+|+.+..++.
T Consensus 266 g~v~~~~------~~~~~l~~~~~~~t~~~-~~~~~aa~~a~L~~l~~~~~ 309 (401)
T PRK00854 266 SAVLSNS------EVLGVLKPGQHGSTFGG-NPLACAVARAALKVLTEEGM 309 (401)
T ss_pred EEEEEcH------HHHhcccCCCCCCCCCc-CHHHHHHHHHHHHHHHHcCH
Confidence 9999987 56665543322233333 44555555667766544333
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-11 Score=121.94 Aligned_cols=228 Identities=16% Similarity=0.111 Sum_probs=132.8
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh---cc
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI---LK 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al---l~ 190 (385)
.+|.|.+++.+.+.+. . ....+ |. .+ .....++++++++|.+. .+.+.||++|+..++..+ ..
T Consensus 44 ~~p~v~~a~~~~~~~~-~--~~~~~-~~-~~----~~~~l~~~la~~~g~~~-----~~~~~sg~~a~~~a~~~~~~~~~ 109 (379)
T TIGR00707 44 AHPKLVEALKEQLEKL-V--HVSNL-YY-TE----PQEELAEKLVEHSGADR-----VFFCNSGAEANEAALKLARKYTG 109 (379)
T ss_pred CCHHHHHHHHHHHhhc-c--ccccc-cC-CH----HHHHHHHHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHhh
Confidence 3588888887766532 1 11112 21 23 23334557889999874 356778999999888755 22
Q ss_pred ----CCCEEeecCCCCCccccCCccccccccccCcce-EEEEeccccCCC-C--CCCHHHHHHHhhhcCCcEEEEcCCCC
Q 016668 191 ----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST-G--LVDYDMLEKTAILFRPKLIIAGASAY 262 (385)
Q Consensus 191 ----pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~i~~~~~~~~-~--~iD~d~le~~i~~~~pklIi~~~s~~ 262 (385)
+||+|+++++.+.|+..... ...+.. +.....++..+. . ..|++++++.+.. ++++|++++.++
T Consensus 110 ~~~~~~~~vi~~~~~yh~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~p~~~ 181 (379)
T TIGR00707 110 DKGKEKKKIIAFENSFHGRTMGAL-------SATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDD-ETAAVIVEPIQG 181 (379)
T ss_pred ccCCCCCeEEEECCCcCCccHHHH-------HhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhh-CeeEEEEEcccc
Confidence 48999999876544321110 001100 000001111111 1 1289999998865 688998865543
Q ss_pred C--C-CC---CHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccEEEEEEeCCCCc
Q 016668 263 P--R-DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPVL 332 (385)
Q Consensus 263 ~--~-~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~~~ 332 (385)
+ . .. ++++|.++|+++|+++++|++|. |+...+... .... ..|++ +++|++ +|+|.|++++++
T Consensus 182 ~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~riG~~~~~~---- 254 (379)
T TIGR00707 182 EGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGKFFAYEHYGIEPDII--TLAKGLGGGVPIGATLAKE---- 254 (379)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhhHHhcCCCCCEE--EEcccccCCcccEEEEEcH----
Confidence 2 1 12 37899999999999999999984 554433211 1112 34655 468998 556889999886
Q ss_pred hhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 333 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
++.+.+.........+ .+....++...+|+.+...++.
T Consensus 255 --~~~~~~~~~~~~~~~~-~~~~~~~aa~aaL~~~~~~~~~ 292 (379)
T TIGR00707 255 --EVAEAFTPGDHGSTFG-GNPLACAAALAVLEVIEKERLL 292 (379)
T ss_pred --HHHhhhcCCCCCCCCC-CCHHHHHHHHHHHHHHHhhhHH
Confidence 5777665432222223 3445555666677655444443
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.5e-12 Score=123.53 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=105.2
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
.++++++++|.+.+ +|.+++|+. ++.++ ..++++| +|++.+|.|.++.. .+...|. ++++++
T Consensus 52 lr~~la~~~~~~~~----~i~~t~G~~~~i~~~-~~~l~~g-~vl~~~p~y~~~~~--------~~~~~g~--~~~~~~- 114 (330)
T TIGR01140 52 LRAAAAAYYGLPAA----SVLPVNGAQEAIYLL-PRLLAPG-RVLVLAPTYSEYAR--------AWRAAGH--EVVELP- 114 (330)
T ss_pred HHHHHHHHhCCChh----hEEECCCHHHHHHHH-HHHhCCC-eEEEeCCCcHHHHH--------HHHHcCC--EEEEeC-
Confidence 34567788898753 566778876 65554 4557888 68888886654421 2334554 344432
Q ss_pred cCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--C
Q 016668 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y 304 (385)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--g 304 (385)
|++++++.++ ++++|++..++|| ...+ +++|.++|+++|+++++|++|. ++..........+ .
T Consensus 115 -------d~~~l~~~~~--~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~ 184 (330)
T TIGR01140 115 -------DLDRLPAALE--ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFI-DFTPDASLAPQAARFP 184 (330)
T ss_pred -------CHHHHHhhcc--cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECccc-ccCCccchhhHhccCC
Confidence 7899998883 5778877777765 4566 6677888899999999999984 3332211111011 2
Q ss_pred CcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 305 CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 305 aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
.++++.|++|++ +|.|.|++++++ ++.+++...
T Consensus 185 ~~i~~~S~SK~~g~~G~R~G~i~~~~------~~~~~l~~~ 219 (330)
T TIGR01140 185 GLVVLRSLTKFFGLAGLRLGFVVAHP------ALLARLREA 219 (330)
T ss_pred CEEEEEecchhhcCchhhhhheeCCH------HHHHHHHhc
Confidence 348899999997 556779999987 577777654
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-11 Score=121.76 Aligned_cols=231 Identities=18% Similarity=0.118 Sum_probs=133.3
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
.+|.|.+++...+.. .. .++.. ++.. ++...+++++++++|.+.+ ..+.+.||++|+..++..+ ..+
T Consensus 53 ~~p~v~~a~~~~~~~-~~-~~~~~--~~~~----~~~~~l~~~l~~~~~~~~~---~v~~~~sgsea~~~al~~~~~~~~ 121 (413)
T cd00610 53 NHPEVVEALKEQLAK-LT-HFSLG--FFYN----EPAVELAELLLALTPEGLD---KVFFVNSGTEAVEAALKLARAYTG 121 (413)
T ss_pred CCHHHHHHHHHHHHh-Cc-CccCc--ccCC----HHHHHHHHHHHHhCCCCCC---EEEEcCcHHHHHHHHHHHHHHHcC
Confidence 478899888877632 11 12110 0012 3344456678999996443 2456788999999999877 468
Q ss_pred CCEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccC---CCCCCCHHHHHHHhhh--cCCcE
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDE---STGLVDYDMLEKTAIL--FRPKL 254 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~---~~~~iD~d~le~~i~~--~~pkl 254 (385)
+|+|++.++.+.|+... .+...+ ..+..++++... +....|++++++.++. .++++
T Consensus 122 ~~~ii~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 194 (413)
T cd00610 122 RKKIISFEGAYHGRTLG-------ALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAA 194 (413)
T ss_pred CCeEEEECCCcCCccHH-------HHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEE
Confidence 99999998755332110 011111 112223321000 0123488999998865 24567
Q ss_pred EEEcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccCc-cccEEEE
Q 016668 255 IIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-GPRGGMI 324 (385)
Q Consensus 255 Ii~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l~-GprgG~I 324 (385)
|++++..+ +...+ +++|.++|+++|+++++|++|. |+...+.. . ...+ ..|++ |++|++. |.+.|++
T Consensus 195 vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~g~~~g~~ 271 (413)
T cd00610 195 VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQT-GFGRTGKMFAFEHFGVEPDIV--TLGKGLGGGLPLGAV 271 (413)
T ss_pred EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcchhhHhhcCCCCCeE--EEcccccCccccEEE
Confidence 77765332 34445 8999999999999999999985 54222211 1 1112 34665 4559985 4577888
Q ss_pred EEeCCCCchhHHHHHH--hhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 325 FFKKDPVLGVELESAI--NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~i--~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++++ ++.+.+ ....+....+ .+...+++...+++.+.++++
T Consensus 272 ~~~~------~~~~~~~~~~~~~~~t~~-~~~~~~~a~~a~l~~l~~~~~ 314 (413)
T cd00610 272 LGRE------EIMDAFPAGPGLHGGTFG-GNPLACAAALAVLEVLEEEGL 314 (413)
T ss_pred EEcH------HHHHhhccCCCCCCCCCC-cCHHHHHHHHHHHHHHHhccH
Confidence 8876 576665 2222222233 333445555567766655444
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=126.65 Aligned_cols=163 Identities=22% Similarity=0.238 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHH---Hh-ccC----CCEEeecCCCCCccccCCcccccccccc
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT---AI-LKP----HDRIMGLDLPHGGHLSHGFMTPKRRVSG 219 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~---al-l~p----GD~Vl~~~~~~ggh~s~~~~~~~~~~~~ 219 (385)
++-...++|++++.|.|. +.+|+.+|+++-++-++ +. -.. .+.||+++-.||-++. .+.+
T Consensus 109 ~li~~Lq~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA--------SAam 176 (496)
T COG1003 109 ELIYELQEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA--------SAAM 176 (496)
T ss_pred HHHHHHHHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh--------hHhh
Confidence 344445789999999998 78999999976555443 33 223 3589999988776543 2346
Q ss_pred CcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC-C-CCCCHHHHHHHHHHcCcEEEEeccccccccccCc
Q 016668 220 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-P-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASV 297 (385)
Q Consensus 220 ~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~-~-~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~ 297 (385)
.|. +++.++.+ ++|.+|+|+|++.+.+ +...+.+.+|++ | +..++.+|++|.+++|..|..|+|....++.
T Consensus 177 ~G~--~VV~V~~~-~~G~VDlddLk~k~~~-~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG--- 249 (496)
T COG1003 177 AGF--KVVVVKCD-ENGNVDLDDLRAKAED-NLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVG--- 249 (496)
T ss_pred cCc--eEEEEecC-CCCCccHHHHHHHhcc-ceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhc---
Confidence 664 55555565 5789999999999975 555554444543 4 5678999999999999999999998666552
Q ss_pred ccCCCC-CCcEEEECCCccCccccE------EEEEEeCC
Q 016668 298 VADPFK-YCDVVTTTTHKSLRGPRG------GMIFFKKD 329 (385)
Q Consensus 298 ~~~p~~-gaDiv~~S~hK~l~Gprg------G~I~~~~~ 329 (385)
...|-+ |+||+-..+||||..|.| |-|..++.
T Consensus 250 ~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~ 288 (496)
T COG1003 250 LARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAH 288 (496)
T ss_pred cccccccccceEEeecccccccCCCCCCCCCCceehHhh
Confidence 234556 899999999999977765 44555543
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=119.80 Aligned_cols=230 Identities=17% Similarity=0.158 Sum_probs=145.4
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCC-CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG-GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~-G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
..+..++++++++...+.. +.+= .++- ..+...++.. ..+.+..++|++. .+.+...+.|++.+..++
T Consensus 35 G~s~~~~e~iea~~~~~~~-~v~L----e~~l~~g~~~~R~~~-~~~~~~~~~~aea-----~~ivnnn~aAVll~~~al 103 (395)
T COG1921 35 GRSLYSPEAIEAMKEAMRA-PVEL----ETDLKTGKRGARLTE-LAELLCGLTGAEA-----AAIVNNNAAAVLLTLNAL 103 (395)
T ss_pred CCccCCHHHHHHHHHHhcc-ccee----eeecccchhhHHHHH-HHHHHhcccchhh-----eeeECCcHHHHHHHHhhh
Confidence 5677799999998766543 3221 1111 1122333332 2333445555554 233556667888888888
Q ss_pred ccCCCEEeecCCCC-CccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEE-EEcCCCCCCC-
Q 016668 189 LKPHDRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI-IAGASAYPRD- 265 (385)
Q Consensus 189 l~pGD~Vl~~~~~~-ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklI-i~~~s~~~~~- 265 (385)
..++..|+..-+.- |||+.-. ..+...|.++. ..+ +++.-...+.+..+.+ +++++ -+..++|+..
T Consensus 104 ~~~~EvVis~g~lV~gg~~~v~-----d~~~~aG~~l~--EvG---~tn~t~~~d~~~AIne-~ta~llkV~s~~~~f~~ 172 (395)
T COG1921 104 AEGKEVVVSRGELVEGGAFRVP-----DIIRLAGAKLV--EVG---TTNRTHLKDYELAINE-NTALLLKVHSSNYGFTG 172 (395)
T ss_pred ccCCeEEEEccccccCCCCChh-----HHHHHcCCEEE--Eec---ccCcCCHHHHHHHhcc-CCeeEEEEeeccccccc
Confidence 77666655433222 4554322 24567787543 422 2345677888888876 56655 4556667753
Q ss_pred -CCHHHHHHHHHHcCcEEEEeccccccccccCc--ccCCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 266 -FDYPRMRQIADAVGALLMMDMAHISGLVAASV--VADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 266 -~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~--~~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
.+.+++++|||++|+.+++|.+ +|...... ....+. |+|+|++|++|.|.||++|+|++++ ++.+++.
T Consensus 173 ~l~~~~l~~ia~~~~lpvivD~a--Sg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkK------elI~~lq 244 (395)
T COG1921 173 MLSEEELVEIAHEKGLPVIVDLA--SGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKK------ELIEKLQ 244 (395)
T ss_pred cccHHHHHHHHHHcCCCEEEecC--CccccccccchhHHHhcCCCEEEEecchhcCCCccceEechH------HHHHHHH
Confidence 4577899999999999999997 44332211 111123 8999999999999999999999999 6777776
Q ss_pred hcc-CCCccCCChHHHHHHHHHHHHHhhCch
Q 016668 342 NAV-FPGLQGGPHNHTIGGLAVCLKHAQSPE 371 (385)
Q Consensus 342 ~~~-fp~~qg~p~~~~iaala~Al~e~~~~~ 371 (385)
+.. -.++- -...+++|+..||+....++
T Consensus 245 ~~~l~Ralr--v~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 245 SHPLKRALR--VDKETLAALEAALELYLQPE 273 (395)
T ss_pred hhhhhhhhh--cCcHhHHHHHHHHHHHcCch
Confidence 542 12222 34578999999999887754
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-11 Score=120.32 Aligned_cols=195 Identities=17% Similarity=0.139 Sum_probs=123.5
Q ss_pred cccccC--CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC---CCCCCCcceeecCCcHH
Q 016668 105 LELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLSGSP 179 (385)
Q Consensus 105 l~Lias--en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg---~~~~~~~~~V~~~sGs~ 179 (385)
++|-.. +-.+|+.+++++...+.......||.. |. .++++. ++++++ ++++ +|..++|+.
T Consensus 22 i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~----~~---~~Lr~a----ia~~~~~~~~~~~----~i~it~Ga~ 86 (335)
T PRK14808 22 TYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDS----PD---EELIEK----ILSYLDTDFLSKN----NVSVGNGAD 86 (335)
T ss_pred eEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC----Ch---HHHHHH----HHHHhCCCCCCcc----eEEEcCCHH
Confidence 444433 344588899998765432211123321 22 355554 555555 5553 567777764
Q ss_pred -HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 016668 180 -ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (385)
Q Consensus 180 -A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~ 258 (385)
++..++.++ |+|++.+|.|.++.. .+...|..+..++ +++ ++.+|.+. + .++++|+++
T Consensus 87 ~~i~~~~~~~----d~v~v~~P~y~~~~~--------~~~~~g~~~~~v~--~~~-~~~~~~~~----~--~~~~~i~i~ 145 (335)
T PRK14808 87 EIIYVMMLMF----DRSVFFPPTYSCYRI--------FAKAVGAKFLEVP--LTK-DLRIPEVN----V--GEGDVVFIP 145 (335)
T ss_pred HHHHHHHHHh----CcEEECCCCHHHHHH--------HHHHcCCeEEEec--CCC-cCCCChhH----c--cCCCEEEEe
Confidence 888888777 789999887654422 3456776554444 543 35554332 2 246899998
Q ss_pred CCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCc-EEEECCCccC--ccccEEEEEEeCCCCc
Q 016668 259 ASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD-VVTTTTHKSL--RGPRGGMIFFKKDPVL 332 (385)
Q Consensus 259 ~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaD-iv~~S~hK~l--~GprgG~I~~~~~~~~ 332 (385)
.++|| ...+.+++.+++ +++++|++|+++. .+. .......+. ... +++.|++|++ +|.|.|++++++
T Consensus 146 nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~-~f~-~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~---- 218 (335)
T PRK14808 146 NPNNPTGHVFEREEIERIL-KTGAFVALDEAYY-EFH-GESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSE---- 218 (335)
T ss_pred CCCCCCCCCcCHHHHHHHH-hcCCEEEEECchh-hhc-CCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCH----
Confidence 88886 567889999998 5799999999973 332 111111122 223 6789999997 589999999987
Q ss_pred hhHHHHHHhhcc
Q 016668 333 GVELESAINNAV 344 (385)
Q Consensus 333 ~~~~~~~i~~~~ 344 (385)
++.+.+....
T Consensus 219 --~~~~~l~~~~ 228 (335)
T PRK14808 219 --KFIDAYNRVR 228 (335)
T ss_pred --HHHHHHHHhc
Confidence 6777776544
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-11 Score=117.97 Aligned_cols=234 Identities=18% Similarity=0.112 Sum_probs=131.5
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC-C
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH-D 193 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG-D 193 (385)
+|.+.+++...+.. +.. ...+| . .+...+ ..+++++++|.+..+ ..+.+.||++|+..++..+..+| +
T Consensus 61 ~p~v~~ai~~~~~~-~~~--~~~~~-~-~~~~~~----la~~l~~~~~~~~~~--~v~~~~sgsea~~~al~~~~~~g~~ 129 (398)
T PRK03244 61 HPAVVEAVTRQLAT-LGH--VSNLF-A-TEPQIA----LAERLVELLGAPEGG--RVFFCNSGAEANEAAFKLARLTGRT 129 (398)
T ss_pred CHHHHHHHHHHHHh-ccC--ccCcc-C-CHHHHH----HHHHHHHhCCCCCCC--EEEEeCchHHHHHHHHHHHHHHCCC
Confidence 58888888777653 211 11122 1 221222 345788888854211 23556788999999998776676 4
Q ss_pred EEeecCCCCCccccCCccccccccccCcceEEEEecc-ccCC-C--CCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC
Q 016668 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR-LDES-T--GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (385)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~-~~~~-~--~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d 267 (385)
+|+..+..|.|+.. . .+...|.......+. ...+ . -..|++++++.+.. ++++|+++++.++ ...+
T Consensus 130 ~ii~~~~~yhg~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~aviiep~~~~~G~~~~ 201 (398)
T PRK03244 130 KIVAAEGGFHGRTM-----G--ALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDD-DTAAVFLEPIQGEAGVVPP 201 (398)
T ss_pred eEEEECCCcCCccH-----H--HHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcC-CeEEEEEecccCCCCCcCC
Confidence 67666654422210 0 111112110000000 0000 0 02488999988853 6888888766543 3444
Q ss_pred ----HHHHHHHHHHcCcEEEEeccccccccccCccc-CCC-C-CCcEEEECCCccCc-cccEEEEEEeCCCCchhHHHHH
Q 016668 268 ----YPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPF-K-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESA 339 (385)
Q Consensus 268 ----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~-~p~-~-gaDiv~~S~hK~l~-GprgG~I~~~~~~~~~~~~~~~ 339 (385)
+++|.++|+++|+++|+|++|. |+...|... ... . ..|+++ ++|+|. |.+.|+++.++ ++.+.
T Consensus 202 ~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pDi~t--~sK~l~~G~~ig~~~~~~------~~~~~ 272 (398)
T PRK03244 202 PAGYLAAAREITDRHGALLVLDEVQT-GIGRTGAWFAHQHDGVTPDVVT--LAKGLGGGLPIGACLAFG------PAADL 272 (398)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecccc-CCcccchHHhhhhhCCCCCEEE--EchhhhCCcccEEEEEcH------HHHhh
Confidence 8899999999999999999984 553333211 111 2 357764 469984 56778888887 56666
Q ss_pred HhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 340 INNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 340 i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
+.........++ +....++...+|+.+.++++.+..+
T Consensus 273 ~~~~~~~~t~~~-~~~~~aaa~a~l~~~~~~~~~~~~~ 309 (398)
T PRK03244 273 LTPGLHGSTFGG-NPVACAAALAVLDTIASEGLLENAE 309 (398)
T ss_pred ccCCCCcCCCCC-CHHHHHHHHHHHHHHHhccHHHHHH
Confidence 654333333333 3344555555676565555544433
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=119.24 Aligned_cols=176 Identities=16% Similarity=0.063 Sum_probs=115.5
Q ss_pred cccccCCCCC-cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHH
Q 016668 105 LELIASENFT-SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANF 182 (385)
Q Consensus 105 l~Liasen~~-s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~ 182 (385)
++|-..+|+. ++.+.+++...+.. ..+||. + ..+ ++++++++|. +|.+++|+ +|+.
T Consensus 11 i~l~~~~np~~p~~~~~a~~~~~~~--~~~yp~---~------~~l----~~~ia~~~~~-------~I~vt~G~~~al~ 68 (311)
T PRK08354 11 IDFSASVNPYPPEWLDEMFERAKEI--SGRYTY---Y------EWL----EEEFSKLFGE-------PIVITAGITEALY 68 (311)
T ss_pred eEecCCCCCCCCHHHHHHHHHHHHH--hhcCCC---h------HHH----HHHHHHHHCC-------CEEECCCHHHHHH
Confidence 4444454444 67788888655432 224553 1 134 3467777772 35567776 4777
Q ss_pred HHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 016668 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (385)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 262 (385)
.++. ++.|||+|++.+|.|.++.. .+...|..+ +.+ .+|++.+++.++ ++++++++.|+|
T Consensus 69 ~~~~-~~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~--~~~-------~~d~~~l~~~~~--~~~~vi~~~P~N 128 (311)
T PRK08354 69 LIGI-LALRDRKVIIPRHTYGEYER--------VARFFAARI--IKG-------PNDPEKLEELVE--RNSVVFFCNPNN 128 (311)
T ss_pred HHHH-hhCCCCeEEEeCCCcHHHHH--------HHHHcCCEE--eec-------CCCHHHHHHhhc--CCCEEEEecCCC
Confidence 6664 44599999999997765422 334556533 332 368899988875 467787777787
Q ss_pred CC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCC-cEEEECCCccC--ccccEEEEEE
Q 016668 263 PR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYC-DVVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 263 ~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~ga-Div~~S~hK~l--~GprgG~I~~ 326 (385)
|+ .. .+++|.++|+++|+++|+|+++ .++...+.. .... -+++.|++|+| +|.|.|++++
T Consensus 129 PTG~~~~~~~l~~l~~~a~~~~~~li~De~y-~~f~~~~~~---~~~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 129 PDGKFYNFKELKPLLDAVEDRNALLILDEAF-IDFVKKPES---PEGENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred CCCCccCHHHHHHHHHHhhhcCcEEEEeCcc-hhccccccc---cCCCcEEEEeccHhhcCCccceeeeeee
Confidence 73 33 4677788889999999999997 455543321 1222 26789999997 7899999998
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=120.10 Aligned_cols=154 Identities=17% Similarity=0.139 Sum_probs=101.0
Q ss_pred HHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC
Q 016668 155 KRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (385)
+.+++.+|.+ +|.+++|+. |+..++ ++.|||+|++.+|.+.++.. .+...|..+. ++++
T Consensus 56 ~~ia~~~~~~------~I~it~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~~--------~~~~~g~~~~--~v~~-- 115 (330)
T PRK05664 56 AAARAYYGAP------QLLPVAGSQAAIQALP--RLRAPGRVGVLSPCYAEHAH--------AWRRAGHQVR--ELDE-- 115 (330)
T ss_pred HHHHHHhCCC------CEEECcCHHHHHHHHH--HccCCCEEEEcCCChHHHHH--------HHHHcCCeEE--Eech--
Confidence 4567778864 366777775 776553 46899999999997755422 3346676443 3322
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCCC-Cc-
Q 016668 234 STGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY-CD- 306 (385)
Q Consensus 234 ~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~g-aD- 306 (385)
+++++.++ ++|+++++.|+||+ ..+ +++|.++|+++|++||+|+++. ........ ..+.. -.
T Consensus 116 -------~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~-~~~~~~s~-~~~~~~~~v 184 (330)
T PRK05664 116 -------AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFM-DNTPQHSL-AACAHRPGL 184 (330)
T ss_pred -------hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcc-cCCCcccc-cccccCCCE
Confidence 34555553 57887777777773 444 5667777889999999999973 32211000 11222 23
Q ss_pred EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccC
Q 016668 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVF 345 (385)
Q Consensus 307 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~f 345 (385)
+++.|++|++ +|.|.|++++++ ++.+.+.....
T Consensus 185 i~~~SfSK~~gl~GlRiG~~v~~~------~l~~~~~~~~~ 219 (330)
T PRK05664 185 IVLRSFGKFFGLAGARLGFVLAEP------ALLRALAELLG 219 (330)
T ss_pred EEEeeccccccCCCcceEEEEeCH------HHHHHHHHhcC
Confidence 6799999997 789999999976 67777765543
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=120.03 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=107.4
Q ss_pred HHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
++.+++++|.+.. +|..++|+. ++..++. +++||| |++++|.+..+.. .+...|..+..++ ++
T Consensus 46 r~~ia~~~~~~~~----~I~it~Gs~~~l~~~~~-~~~~~~-vv~~~P~y~~y~~--------~~~~~G~~v~~vp--~~ 109 (332)
T PRK06425 46 EDQIKIYTQGLKI----KVLIGPGLTHFIYRLLS-YINVGN-IIIVEPNFNEYKG--------YAFTHGIRISALP--FN 109 (332)
T ss_pred HHHHHHHhCCCcc----eEEECCCHHHHHHHHHH-HhCCCc-EEEeCCChHHHHH--------HHHHcCCeEEEEe--CC
Confidence 3467889999874 577778775 7777765 678875 5555776654322 3456777655555 44
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CC
Q 016668 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY 304 (385)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~g 304 (385)
. ..+|.+.+++ .++|+|+++.++||+ ..+ +++|.++|+++|++||+|+++ ..+...+. ++.. +.
T Consensus 110 ~--~~~~~~~l~~----~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y-~~~~~~~~-~~~~~~~~~ 181 (332)
T PRK06425 110 L--INNNPEILNN----YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAF-IDFVPNRA-EEDVLLNRS 181 (332)
T ss_pred c--ccCcHHHHhh----cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecch-hccccccc-hhHHHHhcc
Confidence 2 3356555442 378999988888873 444 677788889999999999996 44443221 1111 12
Q ss_pred -Cc-EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 305 -CD-VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 305 -aD-iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
-. +++.|++|++ +|.|.|++++++ ++.+++...
T Consensus 182 ~~~vi~~~SfSK~~~l~GlRiGy~v~~~------~li~~l~~~ 218 (332)
T PRK06425 182 YGNVIIGRSLTKILGIPSLRIGYIATDD------YNMKISRKI 218 (332)
T ss_pred CCCEEEEeecHHhcCCchhhheeeecCH------HHHHHHHHc
Confidence 23 6789999986 788999999987 677777653
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=117.46 Aligned_cols=227 Identities=13% Similarity=0.086 Sum_probs=127.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
-+|.|.+++...+.. +.... +.. .++...+ ..++++++++.+. .+++.||++|+.+++.....
T Consensus 57 ~~p~v~~ai~~~~~~-~~~~~---~~~-~~~~~~~----l~~~l~~~~~~~~-----~~~~~SGseA~e~Alk~a~~~~~ 122 (396)
T PRK04073 57 RHPKIIQALKDQADK-VTLTS---RAF-HSDQLGP----WYEKVAKLTGKDM-----VLPMNTGAEAVETAIKAARRWAY 122 (396)
T ss_pred CCHHHHHHHHHHHhh-ccccc---ccc-CCHHHHH----HHHHHHhcCCCCe-----EEEcCChHHHHHHHHHHHHHHhh
Confidence 367888877766542 22111 111 1222223 3456777777543 46688999999998876531
Q ss_pred ------CC-CEEeecCCCCCccccCCccccccccccCcceEEEEecc-ccCC---CCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 191 ------PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR-LDES---TGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 191 ------pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~-~~~~---~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
+| ++|+..+-.+ ||+... .++..+.......+. ..++ -...|++++++.+.+ ++++|++++
T Consensus 123 ~~~g~~~~r~~ii~~~~~~-----HG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~viiep 194 (396)
T PRK04073 123 DVKGVEPNKAEIIACEGNF-----HGRTMA--AVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAITP-NTAAFLVEP 194 (396)
T ss_pred hccCCCCCCCEEEEECCCc-----CCCCHH--HHhhcCCcccccCCCCCCCCceEeCCCCHHHHHHhccc-CeEEEEEcC
Confidence 34 7788776432 332100 111111100000000 0000 002378999988854 688899887
Q ss_pred CCCC--CCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccCcc--ccEEEEEEeC
Q 016668 260 SAYP--RDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGGMIFFKK 328 (385)
Q Consensus 260 s~~~--~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l~G--prgG~I~~~~ 328 (385)
+.++ ...+ +++|.++|+++|+++++|++|. |+...|.. . ...+ ..|++++ +|.+.+ .+.|++++++
T Consensus 195 ~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~pdi~~~--sK~lg~gg~~ig~~~~~~ 271 (396)
T PRK04073 195 IQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-GLGRTGKLFACDWDNVTPDMYIL--GKALGGGVFPISCVAANR 271 (396)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcCcHHHHhhhcCCCCCEEEe--cccccCCCCcceEEEEcH
Confidence 6543 3333 8999999999999999999985 55333321 1 1112 4577664 699844 6889999887
Q ss_pred CCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 329 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.+.+.........++ ++...++...+|+.+.++++
T Consensus 272 ------~i~~~~~~~~~~~t~~~-~~~~~aaa~aaL~~~~~~~l 308 (396)
T PRK04073 272 ------DILGVFTPGSHGSTFGG-NPLACAVSIAALEVLEEEKL 308 (396)
T ss_pred ------HHHhhhcCCCCCCCCCC-CHHHHHHHHHHHHHHHhcCH
Confidence 57776654333333343 33444444567776555555
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-10 Score=117.27 Aligned_cols=225 Identities=14% Similarity=0.091 Sum_probs=129.1
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC--
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH-- 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG-- 192 (385)
.|.|.+++...+... .. ....| .. .++...++++++++|.+. .+.+.||++|+.+++..+..++
T Consensus 57 ~p~v~~a~~~~~~~~-~~--~~~~~--~~----~~~~~la~~l~~~~~~~~-----v~~~~gg~eA~~~al~~a~~~~~~ 122 (396)
T PRK02627 57 HPKLVEAIQEQAAKL-IH--TSNLY--YI----EPQEELAEKLVELSGMDK-----VFFCNSGAEANEAAIKLARKYGHK 122 (396)
T ss_pred CHHHHHHHHHHHhhc-cc--ccccc--CC----HHHHHHHHHHHhhcCCCE-----EEECCCcHHHHHHHHHHHHHHhcc
Confidence 478888887766432 11 11111 12 334445567888887753 3567788999999998776544
Q ss_pred -----CEEeecCCCCCccccCCccccccccccCcceEEEEe-ccccCCCC----CCCHHHHHHHhhhcCCcEEEEcCCCC
Q 016668 193 -----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP-YRLDESTG----LVDYDMLEKTAILFRPKLIIAGASAY 262 (385)
Q Consensus 193 -----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~-~~~~~~~~----~iD~d~le~~i~~~~pklIi~~~s~~ 262 (385)
++|++.++.+. ++.. ..+...+....... .++. .+. ..|++++++.+.. ++++|++.++++
T Consensus 123 ~~~~~~~ii~~~~~yh-----g~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~~ 193 (396)
T PRK02627 123 KGIEKPEIITAENSFH-----GRTL--ATLSATGQPKYQEGFEPLV-EGFIYVPFNDIEALKAAITD-KTAAVMLEPIQG 193 (396)
T ss_pred cCCCCCeEEEECCCcC-----cccH--HHHHhcCCccccccCCCCC-CCceEeCCCCHHHHHHhcCC-CeEEEEEecccC
Confidence 66888776542 2210 01111111100000 0111 011 2389999998853 788998876543
Q ss_pred CC---C---CCHHHHHHHHHHcCcEEEEeccccccccccCcccC--CCC-CCcEEEECCCccC-ccccEEEEEEeCCCCc
Q 016668 263 PR---D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPVL 332 (385)
Q Consensus 263 ~~---~---~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~~~ 332 (385)
+. . ..+++|.++|+++|++||+|++|. |+...|.... .+. ..|++ |++|.+ +|.+.|++++++
T Consensus 194 ~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~~~~G~rig~~~~~~---- 266 (396)
T PRK02627 194 EGGVNPADKEYLQALRELCDENGILLILDEVQT-GMGRTGKLFAYQHYGIEPDIM--TLAKGLGGGVPIGAVLAKE---- 266 (396)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-CCCccCceeeehhcCCCCCEE--EEcchhhCCcccEEEEEcH----
Confidence 21 1 238999999999999999999985 6543332111 111 34665 467998 466889999887
Q ss_pred hhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 333 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.+.+.........+ .+....++...+++.+...++
T Consensus 267 --~~~~~~~~~~~~~t~~-~~~~~~~aa~~~l~~~~~~~~ 303 (396)
T PRK02627 267 --KVADVFTPGDHGSTFG-GNPLACAAALAVIEIIEEEGL 303 (396)
T ss_pred --HHHhccCCCCCCCCCC-CCHHHHHHHHHHHHHHhhccH
Confidence 5666665432223333 344445555556665544444
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=116.10 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=130.8
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
.+|.|.+++...+. .+..+.+ .+ ..+...+ +++.++++++.+. .++++||+.||..++..+..
T Consensus 48 ~~p~v~~a~~~~~~-~~~~~~~--~~--~~~~~~~----~~~~l~~~~~~~~-----~~~~~SGs~A~e~al~~~~~~~~ 113 (400)
T PTZ00125 48 CHPKILAALINQAQ-KLTLTSR--AF--YNDVLGL----AEKYITDLFGYDK-----VLPMNSGAEAGETALKFARKWGY 113 (400)
T ss_pred CCHHHHHHHHHHHH-hcccccc--cc--cCHHHHH----HHHHHHhCCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence 47888888877654 2322211 11 1232233 4456777787653 46788999999999986631
Q ss_pred -------CCCEEeecCCCCCccccCCccccccccccCcceEEEEec-cccCC---CCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 191 -------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDES---TGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 191 -------pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~-~~~~~---~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
.+++|+..+-.+ |+.... .+...+.......+ +..+. -...|++++++.++..++++|++++
T Consensus 114 ~~~~~~~~~~~vl~~~~~~-----Hg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep 186 (400)
T PTZ00125 114 EVKGIPENQAKIIFCNGNF-----SGRTIG--ACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEP 186 (400)
T ss_pred hccCCCCCCCeEEEECCCc-----CCccHH--HHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcC
Confidence 357788776322 332110 11111110000000 00000 0124899999998634688998876
Q ss_pred CCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-cCCCC--CCcEEEECCCccCcc--ccEEEEEEeC
Q 016668 260 SAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK--YCDVVTTTTHKSLRG--PRGGMIFFKK 328 (385)
Q Consensus 260 s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~p~~--gaDiv~~S~hK~l~G--prgG~I~~~~ 328 (385)
..+ +...+ +++|+++|+++|+++|+|++| .|+...|.. ..... ..|++++| |+|.| ++.|++++++
T Consensus 187 ~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~-~g~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~ 263 (400)
T PTZ00125 187 IQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQ-TGLGRTGKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLAND 263 (400)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCccchhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcH
Confidence 543 34455 999999999999999999998 454333321 11112 34777654 99854 3778898887
Q ss_pred CCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 329 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
++.+.+.........++ ++...++...+++.+.++++.
T Consensus 264 ------~~~~~~~~~~~~~t~~~-~~~~~~aa~~~l~~i~~~~~~ 301 (400)
T PTZ00125 264 ------DVMLVIKPGEHGSTYGG-NPLACAVAVEALEVLKEEKLA 301 (400)
T ss_pred ------HHHhhccCCCCCCCCCc-CHHHHHHHHHHHHHHHhcCHH
Confidence 57776654332233333 333444445567666555553
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-10 Score=115.81 Aligned_cols=226 Identities=16% Similarity=0.116 Sum_probs=127.2
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
.+|.|.+++...+.+.... + ....++...+ +.++++++++.+. ...++||++||.+++....
T Consensus 57 ~~p~v~~a~~~~~~~~~~~---~--~~~~~~~~~~----l~~~l~~~~~~~~-----~~~~~sGseA~e~a~klar~~~~ 122 (403)
T PRK05093 57 CHPALVKALKEQGEKLWHI---S--NVFTNEPALR----LAKKLIDATFAER-----VFFANSGAEANEAAFKLARRYAC 122 (403)
T ss_pred CCHHHHHHHHHHHHhcCcc---c--CccCCHHHHH----HHHHHHhhCCCCE-----EEEeCchHHHHHHHHHHHHHHHh
Confidence 4788888888776532111 1 1112332223 3456777776543 4667899999999987541
Q ss_pred ----cCCCEEeecCCCCCccccCCccccccccccCcce-E-E-EEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 190 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-F-E-SMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 190 ----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~-~-~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
...++|+..+-.+ ||+... .++..+.. + . ..+...+-. -...|++++++.+.+ ++++|++++.
T Consensus 123 ~~~~~~~~~ii~~~~~~-----HG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aaiiiep~- 193 (403)
T PRK05093 123 DRHGPEKTEIIAFHNSF-----HGRTLF--TVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVIDD-HTCAVVVEPI- 193 (403)
T ss_pred hcCCCCCCeEEEEcCCc-----CCchhh--hHhhcCChhhhhcCCCCCCCcEEeCCCCHHHHHHHhcC-CeEEEEEecc-
Confidence 1235677666332 332100 11111100 0 0 000000000 012388999998854 6888988743
Q ss_pred CCC--C-----CCHHHHHHHHHHcCcEEEEeccccccccccCcccCC--CC-CCcEEEECCCccC-ccccEEEEEEeCCC
Q 016668 262 YPR--D-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FK-YCDVVTTTTHKSL-RGPRGGMIFFKKDP 330 (385)
Q Consensus 262 ~~~--~-----~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p--~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~ 330 (385)
++. . ..+++|+++|++||+++|+|++|. |+...|..... ++ ..|+ .|++|++ +|++.|++++++
T Consensus 194 ~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi--~s~sK~l~~G~rig~vv~~~-- 268 (403)
T PRK05093 194 QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRTGDLFAYMHYGVTPDI--LTSAKALGGGFPIGAMLTTA-- 268 (403)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCccchhhhhcCCCCCE--EEecccccCCcceEEEEEcH--
Confidence 331 1 238999999999999999999985 76544432111 11 2454 4678998 678899999987
Q ss_pred CchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 331 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 331 ~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.+.+.........++ ++...++...+|+.+..+++
T Consensus 269 ----~i~~~l~~~~~~~t~~~-~~~~~~aa~a~L~~~~~~~~ 305 (403)
T PRK05093 269 ----EIASHFKVGTHGSTYGG-NPLACAVAEAVFDIINTPEV 305 (403)
T ss_pred ----HHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHHHhhccH
Confidence 57776654333333433 33444444556766655544
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=115.81 Aligned_cols=243 Identities=13% Similarity=0.066 Sum_probs=151.0
Q ss_pred hhccccccCCCCCcHHHHHHHhhHhhccCCCCCCC-CCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHH
Q 016668 102 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (385)
Q Consensus 102 ~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~-~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A 180 (385)
++..+..|++..+|+.|++++...+.+....|..- ...+.+.++.+ +-+.+.+.++++|+++.+ +.+.+...|||.+
T Consensus 3 ~~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~-i~~~~~~~Lr~Ll~~P~~-y~Vlfl~GggT~~ 80 (364)
T PRK12462 3 RNQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSS-LLAQAEADLRDLLGIPDE-YGVVFLQGGSSLQ 80 (364)
T ss_pred cccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHH-HHHHHHHHHHHHhCCCCC-CeEEEEeccHHHH
Confidence 35678889999999999999998887755433221 11222444444 444588899999999542 3365666678889
Q ss_pred HHHHHHHhccCCCEEe-ecCCCCCccccCCccccccccccCcceEEEEecccc-CCCCCCCHHHHHHHhhhcCCcEEEEc
Q 016668 181 NFEVYTAILKPHDRIM-GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILFRPKLIIAG 258 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl-~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~-~~~~~iD~d~le~~i~~~~pklIi~~ 258 (385)
+.++...|+++||+++ +.. .|+++..+. +.+...| .++.+..... ..+..+++++++ +.+ +.+.|.+.
T Consensus 81 ~ea~~~Nll~~g~~~~~~~~---tG~fg~r~~---~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~~-d~~~v~~t 150 (364)
T PRK12462 81 FSMIPMNFSRPGAAAPEYVT---TGYWSRKAI---GEASRVA-AMRVVWDGAASGYRTLPSLAELD--WDA-RAPFRHYV 150 (364)
T ss_pred HHHHHHHcCCCCCcEEEEEe---CCHHHHHHH---HHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cCC-CCcEEEEc
Confidence 9999999999999765 333 366665442 1222334 3333321111 112356766652 111 35666554
Q ss_pred --CCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCC----
Q 016668 259 --ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV---- 331 (385)
Q Consensus 259 --~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~---- 331 (385)
.+.+|...+ ++.+.+++++++|++-..|- .|-+++..|+++++.+|+|. |.| ++++.+++.+
T Consensus 151 ~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s-----~pid~~~~dvi~agsQKnlg-P~Gltvvivs~~al~~~~ 219 (364)
T PRK12462 151 SNETVEGLQFP-----DAAGLPDSPLIADMSSDFMS-----RPFDVEAYGMVYAHAQKNLG-PAGVTVAIIRRALLERVP 219 (364)
T ss_pred cCCCCceEecC-----cccccCCCeEEEEcCchhhC-----CCCChHHccEEEeeccccCC-CCceEEEEECHHHHhhcc
Confidence 344565553 33334689999999743321 22334455999999999995 888 6777776421
Q ss_pred ----chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCc
Q 016668 332 ----LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 332 ----~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
.+.++...++... +..+|....|.++..+|+.++++
T Consensus 220 ~~~p~~ldy~~~~~~~s---~~nTPpv~~iy~l~~~l~~i~~e 259 (364)
T PRK12462 220 DTLPPMLDFRTHVEHRS---NYNTPPVFAIYVMALVLRWIRDE 259 (364)
T ss_pred ccCCchhhHHHHHhcCC---CCCCchHHHHHHHHHHHHHHHHh
Confidence 1223333333321 22378999999999999998876
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-10 Score=115.08 Aligned_cols=226 Identities=18% Similarity=0.145 Sum_probs=128.4
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----- 189 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all----- 189 (385)
+|.|.+++...+.+-+.. +..+ .++...+ ..++++++++.+. ..+++||++||..++..+.
T Consensus 53 ~p~v~~a~~~~~~~~~~~---~~~~--~~~~~~~----la~~L~~~~~~~~-----~~f~~SGseA~e~Alk~ar~~~~~ 118 (397)
T TIGR03246 53 HPELVKALIEQADKLWHI---GNGY--TNEPVLR----LAKKLVDATFADK-----VFFCNSGAEANEAALKLARRYALD 118 (397)
T ss_pred CHHHHHHHHHHHHhcccc---cCcc--CCHHHHH----HHHHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHHh
Confidence 788888887776542211 1111 2232223 3456778877643 4668899999999998651
Q ss_pred ---cCCCEEeecCCCCCccccCCccccccccccCcceEEEEec-cccCC---CCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 016668 190 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDES---TGLVDYDMLEKTAILFRPKLIIAGASAY 262 (385)
Q Consensus 190 ---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~-~~~~~---~~~iD~d~le~~i~~~~pklIi~~~s~~ 262 (385)
...++|+..+-.+ ||+.. ..++..+......++ +..+. -...|++++++.+.+ ++++|++++...
T Consensus 119 ~~~~~r~~ii~~~~~y-----HG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Epi~~ 190 (397)
T TIGR03246 119 KHGADKSEIVAFKNSF-----HGRTL--FTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISD-KTCAVIVEPIQG 190 (397)
T ss_pred cCCCCCCEEEEECCCc-----CCccH--HHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhcc-CeEEEEEecccC
Confidence 1245677665322 33211 011222210000000 00000 012489999998864 688888875432
Q ss_pred --C----CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccC--CCC-CCcEEEECCCccC-ccccEEEEEEeCCCCc
Q 016668 263 --P----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPVL 332 (385)
Q Consensus 263 --~----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~~~ 332 (385)
+ ....+++|+++|+++|+++|+|++| .|+...|.... .+. ..|++ ++.|.+ .|.+.|++++++
T Consensus 191 ~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lggG~pigav~~~~---- 263 (397)
T TIGR03246 191 EGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDIL--TSAKALGGGFPIGAMLTTT---- 263 (397)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCccccchhhhhcCCCCCEE--EeehhhhCCcceeEEEEcH----
Confidence 2 2234899999999999999999999 67643343211 122 35766 567998 667788888887
Q ss_pred hhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 333 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.+.+.......+.++ ++...++..++++.+.+++.
T Consensus 264 --~i~~~~~~~~~~~t~~~-~p~~~aaa~a~l~~~~~~~l 300 (397)
T TIGR03246 264 --EIAAHLKVGTHGTTYGG-NPLACAVAGKVLDLVNTPEL 300 (397)
T ss_pred --HHHHhccCCCcCCCCCC-CHHHHHHHHHHHHHHhhccH
Confidence 57666654333333332 33445555557766655554
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-12 Score=122.91 Aligned_cols=190 Identities=16% Similarity=0.215 Sum_probs=58.9
Q ss_pred HHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecC---CCCCccccCCccccccccccCcceEEEEeccc
Q 016668 155 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD---LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~---~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
+.+++++|++.+ +...+...|++.++.++. +|.+|++.. .+.||.+... ..+...|.. .+.++.
T Consensus 54 ~ll~~ltgAeaA-----~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip-----~vm~~sGa~--lvEVGt 120 (367)
T PF03841_consen 54 ELLCELTGAEAA-----LVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIP-----DVMRQSGAR--LVEVGT 120 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-----cccccccccccccccccc-cccccccccccccccccccccc-----ccccccccc--cccccc
Confidence 357789999874 334566678877777765 566777664 2334432211 233455653 334333
Q ss_pred cCCCCCCCHHHHHHHhhhcCCcEE-EEcCCCCC-----CCCCHHHHHHHHHHcCcEEEEecccccccccc----Cc----
Q 016668 232 DESTGLVDYDMLEKTAILFRPKLI-IAGASAYP-----RDFDYPRMRQIADAVGALLMMDMAHISGLVAA----SV---- 297 (385)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~pklI-i~~~s~~~-----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~----g~---- 297 (385)
. ..-.+++.++.+.+ ++.+| .+..|||- ...++++++++|++|++++++|.. +|.... |.
T Consensus 121 t---N~t~~~Dye~AI~e-~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~Dlg--sG~l~dl~~~gl~~Ep 194 (367)
T PF03841_consen 121 T---NRTHLSDYEKAITE-NTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLG--SGLLVDLSPYGLPDEP 194 (367)
T ss_dssp --------------------------------------------HHHHHHHHHT--EEEE-T--THHHHHHHTT------
T ss_pred c---cccccccccccccc-cccccccccccccccccccccccHHHHHHHHhhcCCcEEEECC--CCCCcCcccccCcccc
Confidence 2 23445666778865 56655 45556652 245799999999999999999986 443321 11
Q ss_pred -ccCCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhccC-CCccCCChHHHHHHHHHHHHHhhCch
Q 016668 298 -VADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPE 371 (385)
Q Consensus 298 -~~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~f-p~~qg~p~~~~iaala~Al~e~~~~~ 371 (385)
....++ |+|+++||..|-|.||+.|+|++++ ++.+++.+... ..+ -..-.++++|..+|+...+++
T Consensus 195 ~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk------~lI~~lk~~pl~Ral--rvdK~tla~L~atL~~Y~~~~ 263 (367)
T PF03841_consen 195 TVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKK------ELIEKLKKHPLGRAL--RVDKLTLAALEATLRLYLDPD 263 (367)
T ss_dssp ----CCCCT-SEEEEETTSSSSS-S-EEEEEEH------HHHHHHHHHHHTTT---B--HHHHHHHHHHHHH-----
T ss_pred HHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCH------HHHHHHhhCCCcceE--eeCHHHHHHHHHHHHHHHHhh
Confidence 112234 8999999999999999999999999 68888876532 222 256789999999999877543
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=114.82 Aligned_cols=227 Identities=19% Similarity=0.159 Sum_probs=130.0
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pG 192 (385)
.+|.|.+++...+.+... .+..+ .+ +++....+++.+.++.+. .+.+.||++|+.+++... ..+|
T Consensus 46 ~~p~v~~a~~~~~~~~~~---~~~~~--~~----~~~~~la~~l~~~~~~~~-----~~~~~sG~~a~~~A~~~a~~~~g 111 (377)
T PRK02936 46 CHPTVTKAVQEQLDDIWH---VSNLF--TN----SLQEEVASLLAENSAGDL-----VFFCNSGAEANEAALKLARKHTG 111 (377)
T ss_pred CCHHHHHHHHHHHHhccc---ccccc--CC----HHHHHHHHHHHhcCCCCE-----EEEeCCcHHHHHHHHHHHHHhcC
Confidence 467888887777653211 11111 12 455555567777766542 366789999999999854 2344
Q ss_pred -CEEeecCCCCCccccCCccccccccccCcceEEEEec-cccCCC---CCCCHHHHHHHhhhcCCcEEEEcCCCCC----
Q 016668 193 -DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDEST---GLVDYDMLEKTAILFRPKLIIAGASAYP---- 263 (385)
Q Consensus 193 -D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~-~~~~~~---~~iD~d~le~~i~~~~pklIi~~~s~~~---- 263 (385)
++|++.+..+ ||+... .+...+.......+ +..++. ...|++++++.+.. ++++|++++....
T Consensus 112 ~~~vi~~~~~~-----Hg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~ii~e~i~~~~G~~ 183 (377)
T PRK02936 112 KSKIVTFEQSF-----HGRTFG--TMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE-EVAAVMLEVVQGEGGVI 183 (377)
T ss_pred CCeEEEECCCc-----CCCcHH--hhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC-CeEEEEEecccCCCCCc
Confidence 6788877543 222110 11111110000000 010000 02388999998854 6788888654321
Q ss_pred --CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccC--CCC-CCcEEEECCCccC-ccccEEEEEEeCCCCchhHHH
Q 016668 264 --RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELE 337 (385)
Q Consensus 264 --~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~ 337 (385)
....+++|+++|+++|+++|+|++| .|+...|.... .+. ..|++ +++|++ .|.++|++++++ ++.
T Consensus 184 ~~~~~~l~~l~~l~~~~~~~lI~DEv~-~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~ig~v~~~~------~~~ 254 (377)
T PRK02936 184 PADPAFLQEVQTLCKKFGALLIIDEVQ-TGIGRTGTLFAYEQFGLDPDIV--TVAKGLGNGIPVGAMIGKK------ELG 254 (377)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCchhhHHHhhCCCCcEE--EEcccccCCCccEEEEEcH------HHH
Confidence 1234899999999999999999998 56654443111 111 24655 578998 556889999887 577
Q ss_pred HHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 338 SAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 338 ~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+.+.........+ .+....++...+++.+..+++
T Consensus 255 ~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~~~~~ 288 (377)
T PRK02936 255 TAFGPGSHGSTFG-GNPLAMAAAKEVLQVIKQPSF 288 (377)
T ss_pred hhccCCCCCCCCC-CCHHHHHHHHHHHHHHHhccH
Confidence 7665443333333 455556666667776644333
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.8e-10 Score=103.53 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=144.0
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCC-------CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYY-------GGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA 180 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~-------~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A 180 (385)
-.--.++++.++++-+. ..||.--.|- --.+.+..+- +.+++++|.|. ++++.|. .|
T Consensus 24 QrGGiLt~eArkal~E~-----gDGYSvCD~C~~Grldei~kPpI~~F~----~dlaeFlg~D~------~R~t~GARe~ 88 (382)
T COG1103 24 QRGGILTEEARKALLEW-----GDGYSVCDFCLEGRLDEITKPPIKDFL----EDLAEFLGMDE------VRVTAGAREA 88 (382)
T ss_pred hccCcCCHHHHHHHHHh-----cCCcchhhhhccCccccccCCcHHHHH----HHHHHHhCCce------eeecccchhh
Confidence 34556789999998743 2343321111 1122233332 24889999986 4567776 69
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh------cCCcE
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL------FRPKL 254 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~------~~pkl 254 (385)
-++++.++.++||.|++... +|.+. | -.+...|..+..+|- ..--+..|+++.-.+.+++ ..|.+
T Consensus 89 KfavMhal~~~gd~vV~D~~---aHYtt-y----vAAEragl~v~eVp~-tg~Pey~i~~e~y~~viee~~~~~g~~~~l 159 (382)
T COG1103 89 KFAVMHALCKEGDWVVVDSL---AHYTT-Y----VAAERAGLNVAEVPN-TGYPEYKITPEGYAEVIEEVKDEGGDPPAL 159 (382)
T ss_pred HHHHHHHhccCCCEEEEcCc---chHHH-H----HHHHhcCCeEEecCC-CCCCceEecHHHHHHHHHHHHhccCCCceE
Confidence 99999999999999998775 44431 1 134567776655551 1111346777666555432 12566
Q ss_pred EEEcCC--CCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCcc-ccEEEEEEeCCC
Q 016668 255 IIAGAS--AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDP 330 (385)
Q Consensus 255 Ii~~~s--~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~G-prgG~I~~~~~~ 330 (385)
.++..+ +|+...|.++++++|+++|+.++...|+..|.. ..+--+ ++||+++|.||+++. -..|++..+.
T Consensus 160 allTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grm----pvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~e-- 233 (382)
T COG1103 160 ALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRM----PVSGKEIGADFIVGSGHKSMAASAPIGVLAMSE-- 233 (382)
T ss_pred EEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccc----cccccccCCCEEEecCccchhccCCeeEEeehh--
Confidence 666543 588888999999999999999999999987743 113233 899999999999843 2456666666
Q ss_pred CchhHHHHHHhhcc---CCC---------ccCCChHHHHHHHHHHHHHh
Q 016668 331 VLGVELESAINNAV---FPG---------LQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 331 ~~~~~~~~~i~~~~---fp~---------~qg~p~~~~iaala~Al~e~ 367 (385)
++.+.+-+.. |+- ..|.|....+|++-.-.+.+
T Consensus 234 ----E~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRV 278 (382)
T COG1103 234 ----EWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERV 278 (382)
T ss_pred ----HHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHH
Confidence 5666543221 322 24567777777776655544
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-09 Score=110.05 Aligned_cols=223 Identities=13% Similarity=0.088 Sum_probs=128.5
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
.+|.|.+++...+.. +..+.+ .+ ..+...+++ +++++++|.+. .+.++||++||..++..+.
T Consensus 54 ~~p~v~~a~~~~~~~-~~~~~~---~~-~~~~~~~l~----~~l~~~~~~~~-----~~~~~SGs~A~e~ai~~a~~~~~ 119 (401)
T TIGR01885 54 CHPKIVKALTEQAQK-LTLSSR---AF-YNDVFGEFA----EYVTKLFGYDK-----VLPMNTGAEAVETAIKLARKWGY 119 (401)
T ss_pred CCHHHHHHHHHHHHh-cccccc---cc-CCHHHHHHH----HHHHhhcCCCE-----EEEeCccHHHHHHHHHHHHHHhh
Confidence 368888888776543 322221 11 233333444 46778888543 4678899999999998752
Q ss_pred -----cC-CCEEeecCCCCCccccCCccccccccccCcce-----E-----EEEeccccCCCCCCCHHHHHHHhhhc--C
Q 016668 190 -----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----F-----ESMPYRLDESTGLVDYDMLEKTAILF--R 251 (385)
Q Consensus 190 -----~p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~-----~~i~~~~~~~~~~iD~d~le~~i~~~--~ 251 (385)
.+ .++|+.....| |+... ..+...+.. + ....++ ..|++++++.++.. +
T Consensus 120 ~~~~~~~~~~~i~~~~~~y-----hg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~ 186 (401)
T TIGR01885 120 KVKGIPENQAIIVSAKGNF-----HGRTL--GAISMSTDPDSRTNFGPYVPGFKKIP------YNNLEALEEALEDHGPN 186 (401)
T ss_pred hhcCCCCCCCEEEEECCCc-----CcccH--HHHhCcCCcccccccCCCCCCceEeC------CCCHHHHHHHHHhcCCC
Confidence 13 45676665443 32210 011222110 0 011111 24789999988643 2
Q ss_pred CcEEEEcCCC--CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcccC--CCC-CCcEEEECCCccCcc--cc
Q 016668 252 PKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSLRG--PR 320 (385)
Q Consensus 252 pklIi~~~s~--~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~~-gaDiv~~S~hK~l~G--pr 320 (385)
..+|++++.. .+...+ +++|+++|+++|+++++|++| .|+...|.... ... ..|++++| |.+.| ++
T Consensus 187 ~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~-~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ 263 (401)
T TIGR01885 187 VCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQ-TGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYP 263 (401)
T ss_pred EEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCccchhhHHhhcCCCCCEEEee--ccccCCCCC
Confidence 3466665432 233333 899999999999999999998 56544443211 112 45777654 99854 57
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 321 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
.|++++++ ++.+.+.......+.+++ +...++...+|+.+.+++..
T Consensus 264 ig~v~~~~------~i~~~~~~~~~~~t~~~~-p~~~~aa~a~L~~i~~~~l~ 309 (401)
T TIGR01885 264 VSAVLADD------DVMLTIKPGEHGSTYGGN-PLACAVAVAALEVLEEEKLA 309 (401)
T ss_pred cEEEEEcH------HHHhhccCCCCCCCCCCC-HHHHHHHHHHHHHHHhccHH
Confidence 78888876 566666543333344443 44455556677766654443
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.1e-11 Score=110.95 Aligned_cols=188 Identities=23% Similarity=0.288 Sum_probs=128.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-cCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-KPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all-~pG 192 (385)
+..+.+++|.+.- -|...|+-.+...+||+ +.+++||-+. .++.+|||.+|+.+++.-+ +||
T Consensus 34 PTdeMr~am~eA~--------vgDdVyGeD~tt~rLE~----~vA~l~GKEA-----gLFv~SGTmgNllaIm~Hc~~rg 96 (384)
T KOG1368|consen 34 PTDEMRRAMAEAS--------VGDDVYGEDPTTNRLEQ----RVAELFGKEA-----GLFVPSGTMGNLLAIMVHCHQRG 96 (384)
T ss_pred ChHHHHHHHhhcc--------cCcccccCCccHHHHHH----HHHHHhCccc-----eeeecccccccHHHHHHHhcCCC
Confidence 4667777776432 22234555566667886 6789999886 3677999999999998875 599
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcC-------CcEEEEcCCCC--C
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-------PKLIIAGASAY--P 263 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~-------pklIi~~~s~~--~ 263 (385)
.+|++-+..| . |.|-. .....+.|.. +.++. +++++.+|+++||..+...+ +|||++..+++ |
T Consensus 97 ~eii~gd~~H---I-~~~E~-gg~s~l~gv~--~~tv~-~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~G 168 (384)
T KOG1368|consen 97 SEIIVGDRAH---I-HRYEQ-GGISQLAGVH--VRTVK-NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCG 168 (384)
T ss_pred ceEEeccchh---e-eehhc-cChhhhccce--eEeee-eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccC
Confidence 9999877543 2 22210 0122355543 33432 23567999999999986432 48999877654 4
Q ss_pred -CCCCH---HHHHHHHHHcCcEEEEeccccccc-cccCcccCCCC----CCcEEEECCCccCccccEEEEEEeCC
Q 016668 264 -RDFDY---PRMRQIADAVGALLMMDMAHISGL-VAASVVADPFK----YCDVVTTTTHKSLRGPRGGMIFFKKD 329 (385)
Q Consensus 264 -~~~dl---~~I~~ia~~~ga~livD~ah~~Gl-i~~g~~~~p~~----gaDiv~~S~hK~l~GprgG~I~~~~~ 329 (385)
...|+ +++.++|+++|+.|+.|+|....- ++.|+ |+. .+|-+..-++|.|..|-|.+|+++++
T Consensus 169 g~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV---~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~ 240 (384)
T KOG1368|consen 169 GKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGV---PVKKICSAFDSVSICLSKGLGAPVGSVIVGSKD 240 (384)
T ss_pred ceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCC---CHHHHHHhhhhhhhhhhccCCCCcccEEEccHH
Confidence 55565 567789999999999999864221 12222 232 56878788899999999999999995
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=114.69 Aligned_cols=233 Identities=19% Similarity=0.169 Sum_probs=148.8
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcH-HHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNE-YIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~-~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
..+.+.+++. +|....-++|..-|+. ...++|+ ..++++|.+++ +.+..|-..|...+.+|+.||
T Consensus 156 ca~~~~~~~~-----kygl~~css~~e~G~~~~hkelE~----l~A~f~g~e~a-----~vF~mGf~TNs~~~p~l~~~g 221 (519)
T KOG1357|consen 156 CAEASLKSFD-----KYGLSRCSSRHEAGTTEEHKELEE----LVARFLGVEDA-----IVFSMGFATNSMNIPSLLGKG 221 (519)
T ss_pred CChHHHHHHH-----HhcccccccchhcccHHHHHHHHH----HHHHhcCCcce-----EEEeccccccccCcceeecCC
Confidence 3566666654 3444444555555653 3445555 57899999983 557778888888899999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh---------cCC--cEEEEcC--
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---------FRP--KLIIAGA-- 259 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~---------~~p--klIi~~~-- 259 (385)
.-|+...++|.+-.. .+++.|+..++.. . -|+++||+.+++ ++| |++++..
T Consensus 222 sLIiSDelNHaSi~~--------GaRLSgAtiRVfk--H------Ndm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegi 285 (519)
T KOG1357|consen 222 SLIISDELNHASLIT--------GARLSGATTRVFR--H------NDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGI 285 (519)
T ss_pred cceeeccccchheec--------cccccCceEEEEe--c------CCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccc
Confidence 999998887754322 3457777555443 2 366777777653 233 4555543
Q ss_pred -CCCCCCCCHHHHHHHHHHcCcEEEEeccccccccc-cCc----ccCC-CCCCcEEEECCCccCccccEEEEEEeCCCCc
Q 016668 260 -SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASV----VADP-FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVL 332 (385)
Q Consensus 260 -s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~-~g~----~~~p-~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~ 332 (385)
+.-+...+++++.+++|++.++|+.|+||+.|... .|. ++.+ ...+||+.+++.|++ |--||+|.+++
T Consensus 286 ysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSf-ga~GGyiagsk---- 360 (519)
T KOG1357|consen 286 YSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSF-GAAGGYIAGSK---- 360 (519)
T ss_pred eeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhc-ccccceecCcH----
Confidence 23456789999999999999999999999988763 232 1111 126789999999986 56889999988
Q ss_pred hhHHHHHHhhccCCCccCCCh-HHHHHHHHHHHHHhhCchH----HHHHHHHhccc
Q 016668 333 GVELESAINNAVFPGLQGGPH-NHTIGGLAVCLKHAQSPEF----KVYQNKSACKP 383 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~qg~p~-~~~iaala~Al~e~~~~~~----~~y~~~v~~~~ 383 (385)
++.+.+....-....++.. +....-...+++-++-++. ++-.+|+.+|+
T Consensus 361 --~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns 414 (519)
T KOG1357|consen 361 --ELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENS 414 (519)
T ss_pred --HHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhh
Confidence 5666654432222222222 2223333446666654433 45555555553
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=109.15 Aligned_cols=165 Identities=23% Similarity=0.296 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCC-CCC------ccccCCcccccccccc
Q 016668 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDL-PHG------GHLSHGFMTPKRRVSG 219 (385)
Q Consensus 147 ~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~-~~g------gh~s~~~~~~~~~~~~ 219 (385)
|-||+ -+++.||++.+- |.+++.|||.|+..++.++|+|||++|...- +|. |--..+ ...+.-
T Consensus 68 dtLe~----vyA~vf~aE~a~--VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~----~gSL~d 137 (416)
T COG4100 68 DTLER----VYAQVFGAEAAL--VRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEG----QGSLKD 137 (416)
T ss_pred hHHHH----HHHHHhccccce--eeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCC----cccHHH
Confidence 45555 478999999752 6788899999999999999999999886531 010 000000 012334
Q ss_pred CcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC----CCC--CCCCHHHHHHHHHHc--CcEEEEecccccc
Q 016668 220 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS----AYP--RDFDYPRMRQIADAV--GALLMMDMAHISG 291 (385)
Q Consensus 220 ~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s----~~~--~~~dl~~I~~ia~~~--ga~livD~ah~~G 291 (385)
.|..++.++ +. .++.+|++.+++.+++ ++|+|.+.-| .-| ...+++++.++.|+. ++++++|++++ .
T Consensus 138 fgi~Y~~v~--Lt-~~gkiD~~~v~~~i~~-~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYG-E 212 (416)
T COG4100 138 FGIKYKAVP--LT-ADGKIDIQAVKTAISD-RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYG-E 212 (416)
T ss_pred hCcceeecc--cc-cCCcccHHHHHHhcCc-cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccch-h
Confidence 455566665 43 2589999999999975 8999977433 222 234678888888886 79999999973 2
Q ss_pred ccccCcccCCCC-CCcEEEECCCccCccc---cEEEEEEeCC
Q 016668 292 LVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKD 329 (385)
Q Consensus 292 li~~g~~~~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~ 329 (385)
++- ...|.. |+|++.+|+-|+-.|- .||+|.++.+
T Consensus 213 FvE---~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~ 251 (416)
T COG4100 213 FVE---EKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAE 251 (416)
T ss_pred hhh---ccCccccchhhhccceeeCCCCceeeccceeechHH
Confidence 231 124555 9999999999996553 4789998885
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=110.96 Aligned_cols=224 Identities=17% Similarity=0.126 Sum_probs=127.8
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--cc
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~ 190 (385)
..+|.|.+++...+.+.. .| ...++...+ .++++++++.... -.++++||++|+.+++... ..
T Consensus 64 h~~p~v~~ai~~q~~~~~--~~-----~~~~~~~~~----lae~l~~~~~~~~----~v~~~~sGseA~e~Alk~ar~~~ 128 (423)
T TIGR00713 64 HAHPRVVEAVKEALERGT--SY-----GAPTEAEIL----LAKEIISRVPSVE----MVRFVNSGTEATMSAVRLARGYT 128 (423)
T ss_pred CCCHHHHHHHHHHHHhCC--cC-----CCCCHHHHH----HHHHHHHhCCccc----EEEEeCCHHHHHHHHHHHHHHhh
Confidence 457999999887775421 11 112221222 3456667665432 1356788999999988754 23
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcce---------------EEEEeccccCCCCCCCHHHHHHHhhh--cCCc
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY---------------FESMPYRLDESTGLVDYDMLEKTAIL--FRPK 253 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~---------------~~~i~~~~~~~~~~iD~d~le~~i~~--~~pk 253 (385)
.+++|+..++.+-|+-. +. ......+.. ...+.++ ..|++++++.++. .+++
T Consensus 129 gr~~ii~~~~~yhG~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~i~~~~~~~a 197 (423)
T TIGR00713 129 GRDKIIKFEGCYHGHHD-AL----LVKAGSGAATLGLPTSPGVPEDFAKLTLVLP------YNDLEALEEVFEEYGEEIA 197 (423)
T ss_pred CCCEEEEEcCCCCCChh-hh----hccccCcccccCCCCCCCCCcccccceEEeC------CCCHHHHHHHHHHcCCcEE
Confidence 56899998875533210 00 000000000 0001111 1389999998863 3567
Q ss_pred EEEEcC-CC-CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-cCCCC-CCcEEEECCCccC-ccccEEEE
Q 016668 254 LIIAGA-SA-YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK-YCDVVTTTTHKSL-RGPRGGMI 324 (385)
Q Consensus 254 lIi~~~-s~-~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~p~~-gaDiv~~S~hK~l-~GprgG~I 324 (385)
+|++.+ ++ .+...+ +++|+++|+++|+++|+|++| .|+..+... ...+. ..|++ +++|.+ .|.+.|++
T Consensus 198 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~-~g~r~g~~~~~~~~~~~pDi~--t~sK~l~~G~pig~v 274 (423)
T TIGR00713 198 GVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVM-TGFRVALGGAQEYFGVEPDLT--TLGKIIGGGLPVGAF 274 (423)
T ss_pred EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccc-cccccCcchhHHHhCCCcchh--hhhhhhcCCCceeee
Confidence 787752 22 333333 789999999999999999998 566432111 11122 34654 588998 56789999
Q ss_pred EEeCCCCchhHHHHHHhhc--cCC-CccCCChHHHHHHHHHHHHHhhCchH
Q 016668 325 FFKKDPVLGVELESAINNA--VFP-GLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~~--~fp-~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++++ ++.+.+... .+. .+.++ +....++..++|+.+.++++
T Consensus 275 ~~~~------~i~~~~~~~~~~~~~~T~~~-~~~~~aaa~a~l~~~~~~~~ 318 (423)
T TIGR00713 275 GGRR------EIMERLAPEGPVYQAGTLSG-NPLAMAAGLATLKLLDEEGV 318 (423)
T ss_pred eEHH------HHHHhhCcCCCeeeccCCCC-CHHHHHHHHHHHHHHhcccH
Confidence 9987 677777531 122 23333 44444444556776655444
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=111.74 Aligned_cols=158 Identities=19% Similarity=0.191 Sum_probs=99.4
Q ss_pred HHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
++.+++++|+... -+|.+++|+. ++.. +..+++||| |++.+|.+.++.. .+...|..+ ++++.+
T Consensus 59 ~~~ia~~~~~~~~---~~I~i~~Gs~e~i~~-l~~~~~~g~-v~v~~P~y~~y~~--------~~~~~g~~~--~~v~~~ 123 (339)
T PRK06959 59 AACAARYYGAPDA---AHVLPVAGSQAAIRA-LPALLPRGR-VGIAPLAYSEYAP--------AFARHGHRV--VPLDEA 123 (339)
T ss_pred HHHHHHHhCCCCc---ccEEECcCHHHHHHH-HHHhcCCCe-EEEcCCCcHHHHH--------HHHHCCCEE--Eeeccc
Confidence 4568899999642 1577788876 6654 455688887 7778887655432 234566543 343333
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHH---HHHHcCcEEEEeccccccccccCcccCCC-CCCc
Q 016668 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQ---IADAVGALLMMDMAHISGLVAASVVADPF-KYCD 306 (385)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~---ia~~~ga~livD~ah~~Gli~~g~~~~p~-~gaD 306 (385)
. +.++ + ..++++++.|+|| ...+.+++.+ .|++++.++|+|+++. .+...... ..+ +.-+
T Consensus 124 ~-------~~~~----~-~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~-~~~~~~s~-~~~~~~~~ 189 (339)
T PRK06959 124 A-------DTLP----A-ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFA-DTLPAASL-AAHTDRPG 189 (339)
T ss_pred c-------hhcc----c-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCc-cCCCcccc-hhccCCCC
Confidence 1 2221 1 3567777778877 4556555554 4567899999999974 33321100 111 1222
Q ss_pred -EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCC
Q 016668 307 -VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFP 346 (385)
Q Consensus 307 -iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp 346 (385)
+++.|++|.+ +|.|.|++++++ ++.+.+.....+
T Consensus 190 vi~l~SfSK~~gl~GlRiGy~v~~~------~li~~l~~~~~~ 226 (339)
T PRK06959 190 LVVLRSVGKFFGLAGVRAGFVLAAP------ALLAALRDALGA 226 (339)
T ss_pred EEEEecChhhcCCcchheEEEecCH------HHHHHHHHhcCC
Confidence 6789999986 789999999987 677877765433
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-09 Score=108.76 Aligned_cols=224 Identities=19% Similarity=0.171 Sum_probs=130.5
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----- 189 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all----- 189 (385)
+|.|.+++...+.+-... +..+ .++...+ ..++++++++.+. .++++||++||..++....
T Consensus 57 ~p~v~~A~~~~~~~~~~~---~~~~--~~~~~~~----la~~l~~~~~~~~-----v~~~~sGseA~e~Alk~ar~~~~~ 122 (406)
T PRK12381 57 HPALREALNEQASKFWHT---GNGY--TNEPVLR----LAKKLIDATFADR-----VFFCNSGAEANEAALKLARKYAHD 122 (406)
T ss_pred CHHHHHHHHHHHhhcccc---cCcc--CCHHHHH----HHHHHHhhCCCCe-----EEEcCCcHHHHHHHHHHHHHHHhh
Confidence 788888888776532111 1111 1222222 3456777776543 4667899999999987652
Q ss_pred ---cCCCEEeecCCCCCccccCCccccccccccCcce-----EEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 190 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 190 ---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
.++++|+..+..+ ||+.. ..+...+.. +...+-++. .-...|++++++.+.+ ++++|++++ .
T Consensus 123 ~~~~~r~~ii~~~~~y-----HG~t~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~l~~-~~aaviiEP-v 192 (406)
T PRK12381 123 RYGSHKSGIVAFKNAF-----HGRTL--FTVSAGGQPKYSQDFAPLPPDIR-HAAYNDLNSASALIDD-QTCAVIVEP-I 192 (406)
T ss_pred cCCCCCCeEEEECCCc-----CCcch--hHHhhcCCcccccCCCCCCCCee-EeCCCCHHHHHHhccC-CeeEEEEeC-C
Confidence 2457788877543 33311 011222210 000000000 0113588999998864 688888863 3
Q ss_pred CC-------CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccC--CCC-CCcEEEECCCccC-ccccEEEEEEeCCC
Q 016668 262 YP-------RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDP 330 (385)
Q Consensus 262 ~~-------~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~ 330 (385)
++ ....+++|+++|++||+++|+|++| .|+...|.... .+. ..|+ .|+.|.+ +|.+.|++++++
T Consensus 193 ~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~gG~~ig~~~~~~-- 267 (406)
T PRK12381 193 QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDV--LTTAKALGGGFPIGAMLTTE-- 267 (406)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hCCCCCcchhhhHhhCCCCCE--EEehhhhhCCCceEEEEEcH--
Confidence 33 1235899999999999999999998 67644443211 111 3465 4777999 677889988887
Q ss_pred CchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 331 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 331 ~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.+.+.......+.+ .++...++...+|+.+.+++.
T Consensus 268 ----~~~~~~~~~~~~~t~~-~~pl~~aaa~a~l~~l~~~~~ 304 (406)
T PRK12381 268 ----KCASVMTVGTHGTTYG-GNPLASAVAGKVLELINTPEM 304 (406)
T ss_pred ----HHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHhhccH
Confidence 6777765543333333 344445555556666655444
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=114.17 Aligned_cols=199 Identities=14% Similarity=0.111 Sum_probs=128.2
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-cCCCEEeecCCCCCccccCCccccccccccC
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 220 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all-~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~ 220 (385)
+.++. ++-+.+.+.++++|+.+. ++.+.+.+.|||.++.+++..++ ++||+|++. |.++..+.. +.+...
T Consensus 34 s~~F~-~i~~e~~~~L~~l~~~~~-~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~-----g~FG~r~~~--eia~~~ 104 (374)
T TIGR01365 34 SKLGK-EKLAEAIKKTREMLGVPA-DYLIGIVPASDTGAVEMALWSMLGCRGVDVLAW-----ESFGKGWVT--DVTKQL 104 (374)
T ss_pred CHHHH-HHHHHHHHHHHHHhCCCC-CcEEEEECCchHHHHHHHHHHcCCCCCCeEEEE-----CHHHHHHHH--HHHHhc
Confidence 33444 444457889999999854 23366677889999999999999 589999974 344443310 123345
Q ss_pred cc-eEEEEeccccCCCCCCCHHHHHHHhhhcCCcEE-EEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcc
Q 016668 221 SI-YFESMPYRLDESTGLVDYDMLEKTAILFRPKLI-IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 221 g~-~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklI-i~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~ 298 (385)
|. .+..+..+ ....+|+++++. +..+. +.+.+++|...|++++.+.. +++++++|+.-+.|- .
T Consensus 105 g~~~v~~l~~~---~g~~~~~~~ve~-----~~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~-----~ 169 (374)
T TIGR01365 105 KLPDVRVLEAE---YGKLPDLKKVDF-----KNDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFA-----Q 169 (374)
T ss_pred CCCCcEEEcCC---CCCCCCHHHcCC-----CCCEEEecCCCchheecccccccccc--CCCcEEEEccchhcC-----C
Confidence 65 34554432 234789999873 12233 33556778888887665322 489999999755442 2
Q ss_pred cCCCCCCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHhh---------------------ccC-CCccCCChHH
Q 016668 299 ADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN---------------------AVF-PGLQGGPHNH 355 (385)
Q Consensus 299 ~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~~---------------------~~f-p~~qg~p~~~ 355 (385)
+-.+++.|++++|.+|+|.+|.| ++++.+++ ..++++. ... ..+..+|..+
T Consensus 170 ~l~~d~iDv~~tgsQK~L~~ppGls~v~vs~~------Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~ 243 (374)
T TIGR01365 170 DLDYHKLDVVTFSWQKVLGGEGAHGMLILSPR------AVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSML 243 (374)
T ss_pred CCChhHCcEEEEechhccCCCCceEEEEECHH------HHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHH
Confidence 33344799999999999999998 67777774 2222211 001 1123357778
Q ss_pred HHHHHHHHHHHhhCc
Q 016668 356 TIGGLAVCLKHAQSP 370 (385)
Q Consensus 356 ~iaala~Al~e~~~~ 370 (385)
.+.++..+++++.++
T Consensus 244 ~l~a~~~~l~~i~~e 258 (374)
T TIGR01365 244 CVEDWLDALKWAESI 258 (374)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888888888877665
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-09 Score=111.82 Aligned_cols=175 Identities=19% Similarity=0.151 Sum_probs=114.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc----C-----C------------------C--
Q 016668 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----P-----H------------------D-- 193 (385)
Q Consensus 143 ~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~----p-----G------------------D-- 193 (385)
.+....+|+.+.+|+++++|.+. .||. ++++||.||+.++.+.-+ | + |
T Consensus 118 SP~~t~lE~~vi~~la~l~G~~~-~~G~--~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~ 194 (608)
T TIGR03811 118 SPATSQMEEEVGKEFATLMGYKN-GWGH--IVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEI 194 (608)
T ss_pred CchHHHHHHHHHHHHHHHhCCCC-CCeE--EeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccc
Confidence 34456899999999999999986 4754 578899999987654311 0 0 0
Q ss_pred -----------------------------EEeecCCCCCccccCCccccccccccCcceE-EEEeccccCCCCCCCHHHH
Q 016668 194 -----------------------------RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF-ESMPYRLDESTGLVDYDML 243 (385)
Q Consensus 194 -----------------------------~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~-~~i~~~~~~~~~~iD~d~l 243 (385)
+|+++. ..|.|.. +.+...|... .++.+++| +++.+|+++|
T Consensus 195 ~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~---~aHyS~~-----KAa~ilGlG~~~vv~VpvD-~~~rmd~~~L 265 (608)
T TIGR03811 195 MDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQ---TKHYSWL-----KAADIIGIGLDQVIPVPVD-SNYRMDINEL 265 (608)
T ss_pred cccccccccchhhhhhhccccccccccceEEEECC---CccHHHH-----HHHHHcCCCcccEEEeecC-CCCcCCHHHH
Confidence 233332 2344321 3455667642 22344465 4679999999
Q ss_pred HHHhhhc----CCc-EEE--EcCCCCCCCCCHHHHHHHH---HHcCc--EEEEecccccc---ccccCc-----------
Q 016668 244 EKTAILF----RPK-LII--AGASAYPRDFDYPRMRQIA---DAVGA--LLMMDMAHISG---LVAASV----------- 297 (385)
Q Consensus 244 e~~i~~~----~pk-lIi--~~~s~~~~~~dl~~I~~ia---~~~ga--~livD~ah~~G---li~~g~----------- 297 (385)
++.+++. .|- +|+ +|.+..+..-|+++|.++| +++|+ |+++|+|++.. +.....
T Consensus 266 ~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~ 345 (608)
T TIGR03811 266 EKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQE 345 (608)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhc
Confidence 9988542 232 233 3556677888999999999 66887 69999997531 111100
Q ss_pred -------c--------------cCCCCCCcEEEECCCccCcccc-EEEEEEeCC
Q 016668 298 -------V--------------ADPFKYCDVVTTTTHKSLRGPR-GGMIFFKKD 329 (385)
Q Consensus 298 -------~--------------~~p~~gaDiv~~S~hK~l~Gpr-gG~I~~~~~ 329 (385)
+ -..++++|-++..+||++.-|- .|++++++.
T Consensus 346 ~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~ 399 (608)
T TIGR03811 346 VHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDI 399 (608)
T ss_pred ccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCH
Confidence 0 0113479999999999987775 488888876
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-08 Score=104.83 Aligned_cols=231 Identities=16% Similarity=0.060 Sum_probs=125.5
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
-+|.|.+++...+.. ...+..+.. .++ .+....+++++++.-..+ ..++.+||++||.+++... ...
T Consensus 60 ~~p~v~~a~~~q~~~-~~~~~~~~~---~~~----~~~~la~~L~~~~~~~~~---~v~f~~SGseA~e~AlklAr~~tg 128 (433)
T PRK08117 60 RHPKVVQAIKEQADK-LMHGPSGVI---YYE----SILKLAEELAEITPGGLD---CFFFSNSGAEAIEGALKLAKHVTK 128 (433)
T ss_pred CCHHHHHHHHHHHHh-ccCcccccc---CCH----HHHHHHHHHHHhCCCCCC---EEEEeCcHHHHHHHHHHHHHHhcC
Confidence 478888888877643 322222211 122 222345567788732221 2345589999999998753 223
Q ss_pred CCEEeecCCCCCccccCCccccccccccCc-------------ceEEEEeccccC---C-----CC-CCCHHHHHHHhhh
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDE---S-----TG-LVDYDMLEKTAIL 249 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~i~~~~~~---~-----~~-~iD~d~le~~i~~ 249 (385)
..+|+..+-. + ||+... .++..+ ..+..++++-.. . +. ..|++++++.++.
T Consensus 129 r~~ii~~~~~---y--HG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 201 (433)
T PRK08117 129 RPYIISFTGC---F--HGRTLG--ALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKH 201 (433)
T ss_pred CCeEEEECCC---c--CCcCHH--HHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHh
Confidence 4567766532 2 332110 000100 011222322100 0 00 1256777777642
Q ss_pred ----cCCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC
Q 016668 250 ----FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL 316 (385)
Q Consensus 250 ----~~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l 316 (385)
.++.+|++.+. ..+...+ +++|+++|++||+++|+|++|. |+...|... ..++ ..|+ .|+.|.+
T Consensus 202 ~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~gr~G~~~~~~~~gv~pDi--~t~sK~l 278 (433)
T PRK08117 202 QVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-GFGRTGEWFAAQTFGVVPDI--MTIAKGI 278 (433)
T ss_pred ccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccccchhHhhcCCCCCE--eehhhhc
Confidence 23556777542 2233444 8999999999999999999996 764444311 1111 2455 5778999
Q ss_pred -ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 317 -RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 317 -~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
.|.+.|++++++ ++.+.+.........+ .++...++...+|+.+.++++
T Consensus 279 g~G~pigav~~~~------~i~~~~~~~~~~~T~~-~np~~~aaa~a~L~~l~~~~l 328 (433)
T PRK08117 279 ASGLPLSAVVASK------ELMEQWPLGSHGTTFG-GNPVACAAALATLEVIKEEKL 328 (433)
T ss_pred cCCCcceeEEEcH------HHHhhccCCCCCCCCC-cCHHHHHHHHHHHHHHHhccH
Confidence 456778888877 5666554333333333 345556666667877655544
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=103.11 Aligned_cols=229 Identities=16% Similarity=0.124 Sum_probs=123.5
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----- 189 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all----- 189 (385)
+|.|.+++...+.. ...++.. ++ + +.+....+++.+..+.+. .++++||++||.+++..+.
T Consensus 54 ~p~v~~a~~~q~~~-~~~~~~~--~~--~----~~~~~la~~l~~~~~~~~-----v~f~~SGseA~e~Aik~ar~~~~~ 119 (395)
T PRK03715 54 NPGMVEALAAQAEK-LINPSPA--FY--N----EPMAKLAGLLTQHSCFDK-----VFFANSGAEANEGAIKLARKWGRK 119 (395)
T ss_pred CHHHHHHHHHHHHh-ccccccc--cc--C----HHHHHHHHHHhhccCCCE-----EEEeCCcHHHHHHHHHHHHHHhhc
Confidence 57777777766542 2222211 11 1 344444555665554432 4678899999999998764
Q ss_pred -cCC-CEEeecCCCCCccccCCccccccccccCcce-EEEEeccccCC---CCCCCHHHHHHHhhhcCCcEEEEcCCC--
Q 016668 190 -KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDES---TGLVDYDMLEKTAILFRPKLIIAGASA-- 261 (385)
Q Consensus 190 -~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~i~~~~~~~---~~~iD~d~le~~i~~~~pklIi~~~s~-- 261 (385)
++| ++|+..+..+ ||+.. ..++..+.. +.....+..+. ....|++++++.+.+ ++.+|++.+..
T Consensus 120 ~~~~r~~ii~~~~~y-----HG~t~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Epv~~~ 191 (395)
T PRK03715 120 HKNGAYEIITFDHSF-----HGRTL--ATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD-KTVAVMLEPVQGE 191 (395)
T ss_pred cCCCCcEEEEECCCc-----CCChH--HHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCC-CceEEEEeCCcCC
Confidence 123 5677766432 33311 112222221 00000000000 013588999988854 57788887532
Q ss_pred CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccCcc-ccEEEEEEeCCCCch
Q 016668 262 YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLG 333 (385)
Q Consensus 262 ~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l~G-prgG~I~~~~~~~~~ 333 (385)
.+...+ +++|+++|+++|+++|+|++|. |+.-.|.. . .-++ ..|++++ .|.|.| ...|.++++++
T Consensus 192 gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~~a~~~~gv~PDi~t~--gK~lg~G~p~~av~~~~~---- 264 (395)
T PRK03715 192 GGVIPATREFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTLFAYELSGIEPDIMTL--GKGIGGGVPLAALLAKAE---- 264 (395)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCcchhhHhhcCCCCceeee--hhhhhCCcceEEEEEccc----
Confidence 223333 8999999999999999999996 65333321 1 1122 4687665 499965 34566677764
Q ss_pred hHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 334 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 334 ~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
+.. +.......++++ ++...++...+|+.+.++++.+..
T Consensus 265 --i~~-~~~~~~~~T~~g-~pl~~aaala~L~~l~~~~l~~~~ 303 (395)
T PRK03715 265 --VAV-FEAGDQGGTYNG-NPLMTAVGVAVISQLLAPGFLEGV 303 (395)
T ss_pred --ccc-ccCCCcCCCCCC-CHHHHHHHHHHHHHHHhccHHHHH
Confidence 321 111111223333 345555555677777655554433
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.9e-09 Score=103.57 Aligned_cols=233 Identities=18% Similarity=0.129 Sum_probs=129.3
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc---c-
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---K- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---~- 190 (385)
+|.|.+++...+.. .. +.+..+ .++ .+....+++.++.+.+. ..+..|||+|+..++.... .
T Consensus 33 ~p~v~~ai~~q~~~-~~--~~~~~~--~~~----~~~~la~~l~~~~~~~~-----v~f~~sGseA~e~AlklAr~~~~~ 98 (382)
T PLN00144 33 DPDWVKAVAEQAGT-LA--HVSNVY--HTI----PQVELAKRLVASSFADR-----VFFCNSGTEANEAAIKFARKYQRV 98 (382)
T ss_pred CHHHHHHHHHHHHh-cC--Cccccc--cCH----HHHHHHHHHHhcCCCCe-----EEEeCCcHHHHHHHHHHHHHHHhc
Confidence 68888888877653 21 111111 122 12223445666665432 3567899999999886442 1
Q ss_pred -----C------CCEEeecCCCCCccccCCccccccccccCcceEEEEec-cccCCC---CCCCHHHHHHHhhhcCCcEE
Q 016668 191 -----P------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDEST---GLVDYDMLEKTAILFRPKLI 255 (385)
Q Consensus 191 -----p------GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~-~~~~~~---~~iD~d~le~~i~~~~pklI 255 (385)
+ ..+|+...-.| ||+-.. .+...+......++ +..++. ...|++.+++.+...++++|
T Consensus 99 ~~~~~~~~~~~~r~~ii~~~~~y-----HG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aav 171 (382)
T PLN00144 99 RAPDKKDPAASSATEFVSFSNSF-----HGRTLG--ALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAV 171 (382)
T ss_pred cCCCCccccccccceEEEECCCc-----ccccHH--HHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEE
Confidence 1 24687766432 332100 11111110000000 000000 02378999988865567888
Q ss_pred EEcCCCCC--C--CCC--HHHHHHHHHHcCcEEEEeccccccccccCcc-cC-CCC-CCcEEEECCCccC-ccccEEEEE
Q 016668 256 IAGASAYP--R--DFD--YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD-PFK-YCDVVTTTTHKSL-RGPRGGMIF 325 (385)
Q Consensus 256 i~~~s~~~--~--~~d--l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~-p~~-gaDiv~~S~hK~l-~GprgG~I~ 325 (385)
++.+..++ . ... +++|+++|+++|+++|.|++| .|+...|.. +. ... ..| +.|+.|.| +|.+.|+++
T Consensus 172 i~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~-tg~gr~g~~~~~~~~~~~PD--i~t~sK~l~~G~pig~v~ 248 (382)
T PLN00144 172 FVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQ-CGLGRTGYLWAHEAYGVEPD--IMTLAKPLAGGLPIGAVL 248 (382)
T ss_pred EEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCccchHhhhhhcCCCCC--EEEecccccCCcceEEEE
Confidence 88755432 1 123 889999999999999999998 465444432 11 112 346 44557998 467889999
Q ss_pred EeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 326 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 326 ~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
+++ ++.+.+.........+ .++...++...+++.+.++++.+..++
T Consensus 249 ~~~------~~~~~~~~~~~~~T~~-~~pl~~aaa~a~l~~i~~~~~~~~~~~ 294 (382)
T PLN00144 249 VTE------KVASAINPGDHGSTFA-GGPLVCNAALAVLDKISKPGFLASVAK 294 (382)
T ss_pred EcH------HHHhccCCCCCCCCCC-CCHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 987 5766665433333333 334445555667777766666544443
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-08 Score=103.40 Aligned_cols=227 Identities=17% Similarity=0.141 Sum_probs=124.5
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~---- 190 (385)
+|.|.+++...+.. +..+.+ .+. ++...+ ..++++++++.+. .++.+||++|+..++.....
T Consensus 93 ~p~v~~ai~~ql~~-~~~~~~--~~~--~~~~~~----la~~L~~~~~~~~-----~~f~~SGseA~e~AlklAr~~~~~ 158 (474)
T PLN02624 93 HPKIIKALTEQAEK-LTLSSR--AFY--NDKFPE----FAEYLTSMFGYDM-----VLPMNTGAEGVETAIKLARKWGYE 158 (474)
T ss_pred CHHHHHHHHHHHHh-cCCccc--ccC--CHHHHH----HHHHHHhhcCCCe-----EEEeCChHHHHHHHHHHHHHHHHh
Confidence 89999999888754 332221 222 222222 3456778887653 35678999999999864321
Q ss_pred ----C-CC-EEeecCCCCCccccCCccccccccccCcceEEEEec-cccCCC---CCCCHHHHHHHhhh--cCCcEEEEc
Q 016668 191 ----P-HD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDEST---GLVDYDMLEKTAIL--FRPKLIIAG 258 (385)
Q Consensus 191 ----p-GD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~-~~~~~~---~~iD~d~le~~i~~--~~pklIi~~ 258 (385)
+ |. +|+... +++ ||.... .++..+.......+ +..+.. ...|++.+++.++. .+.++|+++
T Consensus 159 ~~g~~~~~~~ii~~~---~~y--HG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiE 231 (474)
T PLN02624 159 KKGIPKNEAIIVSCC---GCF--HGRTLA--AISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFE 231 (474)
T ss_pred hcCCCCCCcEEEEEC---CCc--CCCCHH--HhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEEC
Confidence 2 33 355443 233 443110 11111110000000 000000 02378899988854 235678887
Q ss_pred CCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCc-ccCC-CC-CCcEEEECCCccCcc--ccEEEEEEe
Q 016668 259 ASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VADP-FK-YCDVVTTTTHKSLRG--PRGGMIFFK 327 (385)
Q Consensus 259 ~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p-~~-gaDiv~~S~hK~l~G--prgG~I~~~ 327 (385)
+..+ +...+ +++|+++|++||+++|+|++|. |+...|. +... .+ ..|++++ .|.+.| ++.|+++.+
T Consensus 232 pv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G~GrtG~~~a~~~~~i~pDiv~l--sK~lggG~~pigav~~~ 308 (474)
T PLN02624 232 PIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-GLARTGKMLACDWEEVRPDVVIL--GKALGGGVIPVSAVLAD 308 (474)
T ss_pred CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CcCcCcchhhHHhcCCCCCEEEe--cccccCCCCcceeeeec
Confidence 6543 33344 9999999999999999999995 6543342 1111 11 4577775 599854 577888887
Q ss_pred CCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 328 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 328 ~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+ ++.+.+.........++ ++...++...+|+.+.+++.
T Consensus 309 ~------~i~~~~~~~~~~~T~~g-~pl~~aaa~aaLe~l~~~~l 346 (474)
T PLN02624 309 K------DVMLCIKPGEHGSTFGG-NPLASAVAMAALQVVQDEKL 346 (474)
T ss_pred H------HHHhHhccCCcCCCCCC-CHHHHHHHHHHHHHHHhchH
Confidence 6 45555543322223333 33445555556766655443
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-08 Score=103.95 Aligned_cols=230 Identities=17% Similarity=0.134 Sum_probs=126.0
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHc-CCCCCCCcceeecCCcHHHHHHHHHHhcc-
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLSGSPANFEVYTAILK- 190 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lf-g~~~~~~~~~V~~~sGs~A~~~a~~all~- 190 (385)
..+|.|.+++...+.+.. . ++...+ .+...++++.+++ +.+. ...+.||++|+..++.....
T Consensus 66 h~~p~i~~a~~~~~~~~~--~-----~~~~~~----~~~~la~~L~~~~~~~~~-----v~~~~sGseA~e~Aik~a~~~ 129 (426)
T PRK00062 66 HAHPEVVEAVIEAAEKGL--S-----FGAPTE----LEVELAELVIELVPSIEM-----VRMVNSGTEATMSAIRLARGY 129 (426)
T ss_pred CCCHHHHHHHHHHHHhCC--c-----CCCCCH----HHHHHHHHHHHhCCCCCE-----EEEecCHHHHHHHHHHHHHHH
Confidence 457888888887775421 1 111122 2222445666666 3222 35678999999999987543
Q ss_pred -CCCEEeecCCCCCccccCCcccc--cccc----ccCcceEEEE---eccccCCCCCCCHHHHHHHhhh--cCCcEEEEc
Q 016668 191 -PHDRIMGLDLPHGGHLSHGFMTP--KRRV----SGTSIYFESM---PYRLDESTGLVDYDMLEKTAIL--FRPKLIIAG 258 (385)
Q Consensus 191 -pGD~Vl~~~~~~ggh~s~~~~~~--~~~~----~~~g~~~~~i---~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~ 258 (385)
.+++|+..+..+-|+.. +.... .... ...+.....+ .+.. ...|++++++.++. .+..+|+++
T Consensus 130 ~g~~~ii~~~~~yHG~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~~l~~~i~~~~~~~aaiivE 204 (426)
T PRK00062 130 TGRDKIIKFEGCYHGHAD-SLLVKAGSGAATLGLPDSPGVPEDFAKHTLTA----PYNDLEAVEELFEEYGDEIAAVIVE 204 (426)
T ss_pred hCCCeEEEEcCccCCchh-hhhhccCccccccCCCCCCCCCcccccceEEc----CCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 36789888765533310 00000 0000 0000000000 0001 12488999988753 245677776
Q ss_pred CC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-cCCCC-CCcEEEECCCccC-ccccEEEEEEeCC
Q 016668 259 AS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKD 329 (385)
Q Consensus 259 ~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~ 329 (385)
+. ..+...+ +++|+++|++||+++|+|++|. |+..++.. ...++ ..|+ .+++|.| .|++.|++++++
T Consensus 205 pv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi--~~~gK~l~~G~p~ga~~~~~- 280 (426)
T PRK00062 205 PVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDL--TTLGKIIGGGLPVGAFGGRR- 280 (426)
T ss_pred CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccCCccHHHHhCCCcch--HhhhhHhhCCCcceeeeEHH-
Confidence 32 2344444 8999999999999999999994 66332211 11112 2465 4667998 456677788876
Q ss_pred CCchhHHHHHHhh--ccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 330 PVLGVELESAINN--AVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 330 ~~~~~~~~~~i~~--~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.+.+.. ..+.+..-+.+....++...+|+.+.++++
T Consensus 281 -----~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~ 320 (426)
T PRK00062 281 -----EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGF 320 (426)
T ss_pred -----HHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchH
Confidence 67776642 122222112344445555567776655443
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.9e-09 Score=99.97 Aligned_cols=198 Identities=17% Similarity=0.162 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHH-HHHHHh--ccCCCEEeecCCCCCccccCCccccccccccCcceEE
Q 016668 149 LETLCQKRALAAFNLDENKWGVNVQPLSGSPANF-EVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (385)
Q Consensus 149 le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~-~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (385)
+-+..-++++.+.|+... +|..+.+|..|. -++.+. ..+|++|++.+- +..++ ..+.....+...+..
T Consensus 77 lp~~lgdklApLiGA~~~----Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~--~~fpT-dly~a~g~~~~~~~~-- 147 (407)
T COG3844 77 LPERLGDKLAPLIGARAG----EVVVTDTTSINLFKVLAAALRPQEGRRVIVSEG--DNFPT-DLYIAEGLADLLGIG-- 147 (407)
T ss_pred chhHHHHHhhhhhcCCCC----ceEEeCCcchHHHHHHHHHhccCCCceEEeecC--CCCCc-chhhhcchhhhhccc--
Confidence 334456789999999885 455566665443 344444 456999998762 12222 222111122333321
Q ss_pred EEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC
Q 016668 226 SMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK 303 (385)
Q Consensus 226 ~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~ 303 (385)
|++ .+.++++++++.+.+ ...+|++...+| +...|+.+|.++|+++|+++..|-+|++|.+ |..+.
T Consensus 148 ---~~~---~~~~~P~~~~~~~~d-d~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGav-----p~~Lh 215 (407)
T COG3844 148 ---YDL---EGVIAPRALEEAITD-DVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAV-----PVDLH 215 (407)
T ss_pred ---ccc---eeeeChHHHHHhhcc-ceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCc-----ceeec
Confidence 222 356788899998865 677787776554 6778999999999999999999999998854 33333
Q ss_pred --CCcEEEECCCccCc-cccE-EEEEEeCCC--C---chhH---------HHHHHh--hccCCCccCCChHHHHHHHHHH
Q 016668 304 --YCDVVTTTTHKSLR-GPRG-GMIFFKKDP--V---LGVE---------LESAIN--NAVFPGLQGGPHNHTIGGLAVC 363 (385)
Q Consensus 304 --gaDiv~~S~hK~l~-Gprg-G~I~~~~~~--~---~~~~---------~~~~i~--~~~fp~~qg~p~~~~iaala~A 363 (385)
++|+-+.++||.|. ||-+ ++++..++- + .+.. ..+... ....-..+|++..-.++++..+
T Consensus 216 ~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~a 295 (407)
T COG3844 216 AAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGA 295 (407)
T ss_pred ccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhh
Confidence 89999999999995 4543 667766541 0 0000 111000 1111224577778888888877
Q ss_pred HHHh
Q 016668 364 LKHA 367 (385)
Q Consensus 364 l~e~ 367 (385)
|..-
T Consensus 296 LDif 299 (407)
T COG3844 296 LDIF 299 (407)
T ss_pred hhhh
Confidence 7643
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-08 Score=99.53 Aligned_cols=226 Identities=19% Similarity=0.141 Sum_probs=137.7
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
+|.|.+|+...+.+-.+-|-|. ++|-.+.+.+.+++..-+. + -+++|||+|++.+++.. .-..
T Consensus 71 ~p~V~~Av~~~l~~G~~fg~Pt-----------e~Ei~~Aell~~~~p~~e~---v-rfvnSGTEAtmsAiRlARa~TgR 135 (432)
T COG0001 71 HPAVVEAVQEQLERGLSFGAPT-----------ELEVELAELLIERVPSIEK---V-RFVNSGTEATMSAIRLARAYTGR 135 (432)
T ss_pred CHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHhcCcccE---E-EEecchhHHHHHHHHHHHHhhCC
Confidence 5889999998887655444443 4555567889999987431 2 34678999999888654 3466
Q ss_pred CEEeecCCCCCccccCCccccc------cccccCcceE----EEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCC
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPK------RRVSGTSIYF----ESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGAS 260 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~------~~~~~~g~~~----~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s 260 (385)
|+|+..+-.|-||.....+... ......|..- ..+.++ ..|++.++++++.. +...||+.+.
T Consensus 136 ~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~------yND~~al~~~~~~~g~~IAaVIvEPv 209 (432)
T COG0001 136 DKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLP------YNDLEALEEAFEEYGDDIAAVIVEPV 209 (432)
T ss_pred CeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEec------CCCHHHHHHHHHHcCCcEEEEEeccc
Confidence 8898887555444221111000 0000111100 111111 35899999999775 3456777643
Q ss_pred --CCCC----CCCHHHHHHHHHHcCcEEEEecccccccccc-CcccCCCC-CCcEEEECCCccC-ccccEEEEEEeCCCC
Q 016668 261 --AYPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAA-SVVADPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPV 331 (385)
Q Consensus 261 --~~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~~~~p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~~ 331 (385)
+.+. ..-+++|+++|+++|++||.|+.++ |+... +..+.-+. ..|+.| +-|.+ .|...|.+.+++
T Consensus 210 ~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViT-GFR~~~gGaq~~~gi~PDltt--lGKiIGGGlP~ga~gGr~--- 283 (432)
T COG0001 210 AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVIT-GFRVALGGAQGYYGVEPDLTT--LGKIIGGGLPIGAFGGRA--- 283 (432)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchh-hcccCCcccccccCcCcchhh--hhhhhcCCcceeeeccHH---
Confidence 3333 3348999999999999999999974 44332 32232232 456654 45988 456778888887
Q ss_pred chhHHHHHHhhc--cCCCccCCChHHHHHHHHHHHHHhhCc
Q 016668 332 LGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 332 ~~~~~~~~i~~~--~fp~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
++.+.+... +|..-.-+-++..++|-.++++++.++
T Consensus 284 ---eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~ 321 (432)
T COG0001 284 ---EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTE 321 (432)
T ss_pred ---HHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhc
Confidence 677766433 232222234556777777789888873
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-08 Score=98.54 Aligned_cols=185 Identities=15% Similarity=0.113 Sum_probs=106.2
Q ss_pred eeecCCcHHHHHHHHHHh--ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecc--cc--CCCCCCCHHHHH
Q 016668 171 NVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR--LD--ESTGLVDYDMLE 244 (385)
Q Consensus 171 ~V~~~sGs~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~--~~--~~~~~iD~d~le 244 (385)
.+++.||++||..++... ..++++|++.+..+ |++... .+...+......++. +. ......|++.++
T Consensus 87 ~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~y-----Hg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~ 159 (375)
T PRK04260 87 AFFCNSGAEANEAAIKIARKATGKQEIITFQNSF-----HGRTFG--SMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVK 159 (375)
T ss_pred EEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCc-----CcccHH--HHhccCCcccCCCCCCCCCCeEEeCCCCHHHHH
Confidence 356789999999888765 34577888876543 221100 111111100000000 00 000135899999
Q ss_pred HHhhhcCCcEEEEcCCCC--CCCC----CHHHHHHHHHHcCcEEEEeccccccccccCcccC--CCC-CCcEEEECCCcc
Q 016668 245 KTAILFRPKLIIAGASAY--PRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKS 315 (385)
Q Consensus 245 ~~i~~~~pklIi~~~s~~--~~~~----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~~-gaDiv~~S~hK~ 315 (385)
+.+.+ +..+|++.+..+ +... .+++|.++|+++|+++++|++| .|+...|.... -.. ..|++ |++|.
T Consensus 160 ~~l~~-~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~-~g~g~~g~~~~~~~~~~~pdi~--t~sK~ 235 (375)
T PRK04260 160 ALVNK-NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQ-TGMGRTGKLYAFEHYGIEPDIF--TLAKG 235 (375)
T ss_pred HhcCC-CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hCCCcccchhhhHhhCCCCCEE--Eeccc
Confidence 88753 567787764432 2222 2899999999999999999998 46644442211 111 34655 68899
Q ss_pred Cc-cccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 316 LR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 316 l~-GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
|. |.+.|++++++ ++.+.+.........++ +....++...+++.+..+++.
T Consensus 236 l~~G~~ig~~~~~~------~~~~~~~~~~~~~t~~~-~~~~~~aa~a~l~~~~~~~~~ 287 (375)
T PRK04260 236 LANGVPVGAMLAKS------SLGGAFGYGSHGSTFGG-NKLSMAAASATLDIMLTAGFL 287 (375)
T ss_pred ccCCcceEEEEEcH------HHHhhcCCCCCCCCCCc-CHHHHHHHHHHHHHHHhhHHH
Confidence 95 66889999987 56666654323333332 333455555567666544443
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=99.06 Aligned_cols=202 Identities=16% Similarity=0.115 Sum_probs=129.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccc
Q 016668 140 YGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS 218 (385)
Q Consensus 140 ~~G~~~~~~le~~~~~~la~lfg~~-~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (385)
|.|.+ .++++.++-+.+.-|-. .=++.-.|.+.++|.||.++...|.+|||..|++.|-|+|.-.+. .-
T Consensus 120 y~Gl~---~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl-------~~ 189 (471)
T KOG0256|consen 120 YHGLP---SFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDL-------RW 189 (471)
T ss_pred ccCch---HHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccc-------ee
Confidence 34554 45554444454444432 112323555666678999999999999999999999887753221 11
Q ss_pred cCcceEEEEeccccCCC-CCCCHHHHHHHhhh-----cCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEecc
Q 016668 219 GTSIYFESMPYRLDEST-GLVDYDMLEKTAIL-----FRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMA 287 (385)
Q Consensus 219 ~~g~~~~~i~~~~~~~~-~~iD~d~le~~i~~-----~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~a 287 (385)
..|. +.+|+.++..+ ..|+.+++|.+.++ .+.|-|++..|+|| ...+ +..+..+|.++++-+|+|+.
T Consensus 190 rTgv--eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEI 267 (471)
T KOG0256|consen 190 RTGV--EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEI 267 (471)
T ss_pred ccCc--eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehh
Confidence 3454 56666565554 48999999988743 24566666566665 3333 66777889999999999999
Q ss_pred ccccccccCc-ccCCCC-------CCc-E-EEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHH
Q 016668 288 HISGLVAASV-VADPFK-------YCD-V-VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNH 355 (385)
Q Consensus 288 h~~Gli~~g~-~~~p~~-------gaD-i-v~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~ 355 (385)
+ +|-+++.. +.+.++ ..| + ++-|++|-| +|.|-|.|++.++ ++.....+....+..++-.-+
T Consensus 268 y-a~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne-----~VvsaA~kmssf~~vSs~tQ~ 341 (471)
T KOG0256|consen 268 Y-AGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNE-----DVVSAATKMSSFGLVSSQTQY 341 (471)
T ss_pred h-cccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecCh-----HHHHHHHHHhhccCCcHHHHH
Confidence 6 56565432 222221 123 2 677999986 7889999999887 777766655555544333334
Q ss_pred HHHH
Q 016668 356 TIGG 359 (385)
Q Consensus 356 ~iaa 359 (385)
.+++
T Consensus 342 ~la~ 345 (471)
T KOG0256|consen 342 LLAS 345 (471)
T ss_pred HHHH
Confidence 4443
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-08 Score=99.21 Aligned_cols=231 Identities=19% Similarity=0.151 Sum_probs=128.9
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg-~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
+|.+.+++.+....-+- .+.-|+ ++ ..++ ..+++.++.+ .+. .++++||++||.+++...-+
T Consensus 60 hP~iv~al~~Q~~kl~h---~sn~~~--~~---~~~~-la~~L~~~s~~~d~-----vff~NSGaEA~EaAiKlARk~~~ 125 (404)
T COG4992 60 HPALVEALKEQAEKLWH---VSNLFY--NE---PQAE-LAEKLVELSPFADR-----VFFCNSGAEANEAALKLARKYTG 125 (404)
T ss_pred CHHHHHHHHHHHHHhhh---cccccC--Ch---HHHH-HHHHHHhhCccccE-----EEEcCCcHHHHHHHHHHHHHHcC
Confidence 78888888876544331 111122 22 2333 3456777876 333 45678999999999976522
Q ss_pred -C-CCEEeecCCCCCccccCCccccccccccCcce-EEEEeccccCCC---CCCCHHHHHHHhhhcCCcEEEEcCCC--C
Q 016668 191 -P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGASA--Y 262 (385)
Q Consensus 191 -p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~i~~~~~~~~---~~iD~d~le~~i~~~~pklIi~~~s~--~ 262 (385)
| .-+|+...-.+ ||.-. ..++..+.. +..-..++-+.- -.-|.+++++++++ ++..|++.+.- .
T Consensus 126 ~~~k~~Iia~~nsF-----HGRT~--galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~-~taAvivEPIQGEg 197 (404)
T COG4992 126 DPEKSKIIAFENSF-----HGRTL--GALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE-DTAAVIVEPIQGEG 197 (404)
T ss_pred CCCCcEEEEEcCCc-----CCccc--eeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhcc-CeEEEEEecccCCC
Confidence 2 23677665333 32210 122333321 110001111110 13589999999977 78888886431 1
Q ss_pred C----CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc-C-CCC-CCcEEEECCCccCcc-ccEEEEEEeCCCCchh
Q 016668 263 P----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA-D-PFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGV 334 (385)
Q Consensus 263 ~----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~-~-p~~-gaDiv~~S~hK~l~G-prgG~I~~~~~~~~~~ 334 (385)
+ ...-+++++++|++||++||.|+.| .|+--+|.+. . -.. ..||++.. |.|.| ...|.++.++
T Consensus 198 GV~~~~~~fl~~lr~lCd~~g~LLI~DEVQ-tG~GRTGk~fA~e~~gV~PDI~tla--K~LgGG~PigA~la~~------ 268 (404)
T COG4992 198 GVIPAPPEFLKALRELCDEHGALLILDEVQ-TGLGRTGKLFAYEHYGVEPDILTLA--KALGGGFPIGAMLATE------ 268 (404)
T ss_pred CCCCCCHHHHHHHHHHHHHhCeEEEEeccc-cCCCccchHHHHHHhCCCCCEEEee--ccccCCccceeeEEch------
Confidence 2 2223899999999999999999999 5664444321 0 011 34777655 99954 3445555554
Q ss_pred HHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 335 ELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 335 ~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
++.+.+....--.+.| -++...|+-.++++.+.++++.+-++
T Consensus 269 ~~~~~~~~G~HgSTfG-GNpLacAv~~a~l~~l~~e~ll~~v~ 310 (404)
T COG4992 269 EIASAFTPGDHGSTFG-GNPLACAVALAVLEVLLEEGLLENVR 310 (404)
T ss_pred hhhhcCCCCcccCCCC-cCHHHHHHHHHHHHHHcchhHHHHHH
Confidence 4555443332222333 33455555566888888888754433
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.7e-09 Score=113.76 Aligned_cols=189 Identities=13% Similarity=0.136 Sum_probs=116.5
Q ss_pred CCCCcHHHHHHHhhHhhccCCC--CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecC-CcHHHHHHHHHH
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSE--GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTA 187 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~--g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~-sGs~A~~~a~~a 187 (385)
+.++|+.|++++.+... .|.. .|...- ..| ..+.|.+ .+..++++.|++.+ ++..+ ++|.+..+++++
T Consensus 114 ~~~~P~~v~~~i~~~~~-~~TaytPYqaEi-sQG--~lqal~~-~Qt~ia~LtG~~~a----naSL~d~aTAaaea~~~a 184 (993)
T PLN02414 114 NTHVPPVILRNILENPG-WYTQYTPYQAEI-AQG--RLESLLN-YQTMITDLTGLPMS----NASLLDEGTAAAEAMAMC 184 (993)
T ss_pred CccCCHHHHHHHHhChH-HHhhcCCCchHH-HHH--HHHHHHH-HHHHHHHHhCCChh----hEeecCChHHHHHHHHHH
Confidence 44578888777764432 1221 122110 012 2233443 67889999999975 44444 556677777777
Q ss_pred h-ccCC--CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC-CCCC
Q 016668 188 I-LKPH--DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA-SAYP 263 (385)
Q Consensus 188 l-l~pG--D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~-s~~~ 263 (385)
+ +++| |+|++.+.+|+++..- + .......|..++.++ ++. .| ...+ ..-.+++.. +.+|
T Consensus 185 ~~~~~g~~~~VlVs~~~hP~~~~v-~---~t~a~~~GieV~~v~--~~~----~~------~~~~-~v~~vlvq~P~~~G 247 (993)
T PLN02414 185 NNILKGKKKKFLIASNCHPQTIDV-C---QTRADGLGLEVVVAD--EKD----FD------YSSG-DVCGVLVQYPATDG 247 (993)
T ss_pred HhcccCCCCEEEEcCccCHhHHHH-H---HHhhhhcCCEEEEec--chh----hc------cccC-ceEEEEEecCCCCe
Confidence 7 6655 7899998776554321 0 012234566555544 221 11 0111 122333444 4578
Q ss_pred CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccC-----ccccEEEEEEeCC
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL-----RGPRGGMIFFKKD 329 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l-----~GprgG~I~~~~~ 329 (385)
...|+++|+++||++|+++++ +++..++.. ...|-+ ||||++++.|||+ +||+.|+++++++
T Consensus 248 ~v~dv~~I~~~ah~~GaL~iV-aad~lal~~---l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~ 315 (993)
T PLN02414 248 EVLDYAEFVKNAHANGVKVVM-ATDLLALTM---LKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQE 315 (993)
T ss_pred EEcCHHHHHHHHHHcCCEEEE-EECHHHhcC---CCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHH
Confidence 888999999999999999999 777666542 222334 9999999999997 7788899999885
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-08 Score=97.62 Aligned_cols=228 Identities=18% Similarity=0.156 Sum_probs=129.3
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCC-
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH- 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pG- 192 (385)
+|.|.+++...+.+-.. .+..+ .++...+ ..++++++++.+. .+..+|||+|+.+++... ..+|
T Consensus 42 ~p~v~~ai~~ql~~~~~---~~~~~--~~~~~~~----la~~l~~~~~~~~-----v~~~~SGseA~e~Alklar~~~gr 107 (364)
T PRK04013 42 HPEWVEEMSEQLEKLVV---AGPMF--EHEEKEE----MLEELSKWVNYEY-----VYMGNSGTEAVEAALKFARLYTGR 107 (364)
T ss_pred CHHHHHHHHHHHHhcCC---ccCCc--CCHHHHH----HHHHHHhhcCCCE-----EEEeCchHHHHHHHHHHHHHHhCC
Confidence 67888888777654221 11112 1232222 3456777777654 366789999999998766 3455
Q ss_pred CEEeecCCCCCccccCCccccccccccCcce-----EEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--C-C
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--P-R 264 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~-~ 264 (385)
++|++.+-.+-|.-. + .+...+.. +.....++... ...|.+.+++.+.. +++.|++.+... + .
T Consensus 108 ~~Ii~~~~syHG~t~-~------~ls~~~~~~~~~~~~p~~~~~~~~-~~~d~~~l~~~i~~-~~aAvivEpi~g~gG~~ 178 (364)
T PRK04013 108 KEIIAMTNAFHGRTM-G------ALSATWKPKYREDFEPLVPGFKHI-PFNDVEAAKEAITK-ETAAVIFEPIQGEGGIV 178 (364)
T ss_pred CEEEEECCccccCch-h------hccCCCCcccccCCCCCCCCcEEe-cCCCHHHHHHHhcC-CcEEEEEcCCcCCCCCc
Confidence 899888754322210 0 11111100 01000001000 12378889888854 678888865321 1 2
Q ss_pred CCC---HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccEEEEEEeCCCCchhHHH
Q 016668 265 DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELE 337 (385)
Q Consensus 265 ~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-GprgG~I~~~~~~~~~~~~~ 337 (385)
..| +++++++|+++|+++|.|+.+. |+ -.|... .-+. ..|++++ .|.+. |-..+.++.+.+ +.
T Consensus 179 ~~~~~yl~~lr~lc~~~gillI~DEv~t-G~-RtG~~~a~~~~gv~PDiv~~--gK~lggG~P~~a~~~~~~------~~ 248 (364)
T PRK04013 179 PAKEEFVKTLRDLTEDVGALLIADEVQS-GL-RTGKFLAIEHYKVEPDIVTM--GKGIGNGVPVSLTLTNFD------VE 248 (364)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEechhh-cC-CCCchhHHHhcCCCCCEEEe--cccccCCceeEEEEeccc------cc
Confidence 344 8999999999999999999984 66 333321 1123 5688877 59984 434455666653 31
Q ss_pred HHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHh
Q 016668 338 SAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSA 380 (385)
Q Consensus 338 ~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~ 380 (385)
......+++ .++-..++....++.+.++++.+.+++++
T Consensus 249 ----~~~~~~T~~-gnp~~~aaa~a~l~~i~~~~l~~~~~~~l 286 (364)
T PRK04013 249 ----RGKHGSTFG-GNPLACKAVAVTLRILRRERLVEKAGEKF 286 (364)
T ss_pred ----CCCcCCCCC-cCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 112222333 34455555566788888888766666553
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.8e-08 Score=99.15 Aligned_cols=231 Identities=16% Similarity=0.103 Sum_probs=123.0
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----- 189 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all----- 189 (385)
+|.|.+++...+.+- . +.+..+ .++ ......+++.+++.... ...+.+|||+|+..++....
T Consensus 58 ~p~v~~ai~~q~~~~-~--~~~~~~--~~~----~~~~la~~L~~~~~~~~----~v~f~~sGseA~e~AlklAr~~~~~ 124 (408)
T PRK04612 58 DPDLVAALTEQAGKL-W--HTSNVF--YSA----PPLKLAEELVTASRFAE----KVFLCNSGTEANEAAIKLVRKWASS 124 (408)
T ss_pred CHHHHHHHHHHHHhc-c--cccccc--CCH----HHHHHHHHHHhhCCCCC----EEEEcCchHHHHHHHHHHHHHHHHh
Confidence 677777777666432 1 111111 122 11223445666654222 24567899999999886442
Q ss_pred -c--C-CCEEeecCCCCCccccCCccccccccccCcceEEEEecc-ccCC---CCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 190 -K--P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR-LDES---TGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 190 -~--p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~-~~~~---~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
+ + ..+|+...-.| ||.... .++..+.......+. +.+. -...|++.+++.+...++.+|++.+..
T Consensus 125 ~g~~~~r~~ii~~~~~y-----HG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~~ 197 (408)
T PRK04612 125 QGRPADKRVIVTFRGSF-----HGRTLA--AVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQ 197 (408)
T ss_pred hCCCCCCcEEEEECCCc-----CCccHH--HHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECCcc
Confidence 1 1 24677765332 443110 111111100000000 0000 012478999988854455667765432
Q ss_pred -CC-C-CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccC-ccccEEEEEEeCCCCch
Q 016668 262 -YP-R-DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLG 333 (385)
Q Consensus 262 -~~-~-~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~~~~ 333 (385)
.+ . .. -+++|+++|+++|+++|+|++|. |+...|....... +...-+.++.|.+ +|.+.|++++++
T Consensus 198 ~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~~----- 271 (408)
T PRK04612 198 GEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-GMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAGP----- 271 (408)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEECH-----
Confidence 11 1 11 38999999999999999999984 5544442111111 2333445667998 456778888776
Q ss_pred hHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 334 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 334 ~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
++.+.+.......+.++ ++...++...+|+.+.+++..
T Consensus 272 -~~~~~~~~~~~~~t~~~-~p~~~aaa~a~L~~~~~~~l~ 309 (408)
T PRK04612 272 -KVAETMQFGAHGTTFGG-NPLAAAVARVALRKLASPQIA 309 (408)
T ss_pred -HHHhhhcCCCcCCCCCC-CHHHHHHHHHHHHHHHhccHH
Confidence 56666654433344443 455666666678777666553
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=111.38 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCCCCCCcceeecC-CcHHHHHHHHHHh-ccCC--CEEeecCCCCCccccCCccccccccccCcceEEEE
Q 016668 152 LCQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAI-LKPH--DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM 227 (385)
Q Consensus 152 ~~~~~la~lfg~~~~~~~~~V~~~-sGs~A~~~a~~al-l~pG--D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i 227 (385)
..+..++++.|++.+ ++... ++|.+..++++++ +++| |+|++++..|++...- + .......|.++..+
T Consensus 125 ~~Qt~la~LtG~~~a----naSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v-~---~t~a~~~G~ev~~~ 196 (954)
T PRK05367 125 NFQTMVADLTGLEIA----NASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDV-L---RTRAEPLGIEVVVG 196 (954)
T ss_pred HHHHHHHHHHCCChh----hccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHH-H---HHHHHhCCCEEEEe
Confidence 367789999999974 44444 5566777777777 5664 9999998766543221 0 01123456655555
Q ss_pred eccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC-CCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CC
Q 016668 228 PYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS-AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC 305 (385)
Q Consensus 228 ~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s-~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-ga 305 (385)
+ .+. |++ ..+...+++..+ .+|...|+++|+++||++|+++++|..+.+... ...|-+ |+
T Consensus 197 ~--~~~-----d~~-------~~~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~----l~~pge~Ga 258 (954)
T PRK05367 197 D--AAK-----ALD-------HDDVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTL----LTPPGEMGA 258 (954)
T ss_pred c--Ccc-----CCC-------cccEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccC----CCChhhcCC
Confidence 4 321 111 113334445444 467888999999999999999999997743322 223445 99
Q ss_pred cEEEECCCcc-----CccccEEEEEEeCC
Q 016668 306 DVVTTTTHKS-----LRGPRGGMIFFKKD 329 (385)
Q Consensus 306 Div~~S~hK~-----l~GprgG~I~~~~~ 329 (385)
||+++++||| ++||..|++.++++
T Consensus 259 Di~vgs~qkfg~P~g~GGP~aGflavr~~ 287 (954)
T PRK05367 259 DIAVGSAQRFGVPMGFGGPHAAYFAVRDA 287 (954)
T ss_pred CEEEeeCcccCCCCCCCCCCEEEEEECHH
Confidence 9999999999 68898899999884
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-07 Score=96.05 Aligned_cols=231 Identities=14% Similarity=0.115 Sum_probs=123.1
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--cC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--~p 191 (385)
..|.|.+++...+.+....+ + .++ .+....+++.++++.... -..+..||++|+..++.... ..
T Consensus 70 ~~p~v~~ai~~q~~~~~~~~------~-~~~----~~~~la~~L~~~~~~~~~---~v~f~~SGsEA~e~AiklAr~~tg 135 (433)
T PRK00615 70 SHPKICDAIQQGAERGTSYG------L-TSE----QEILFAEELFSYLGLEDH---KIRFVSSGTEATMTAVRLARGITG 135 (433)
T ss_pred CCHHHHHHHHHHHHhCCCCC------C-CCH----HHHHHHHHHHHhCCCCcC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 36888888777665321101 1 122 222234567777754321 23567899999999987542 23
Q ss_pred CCEEeecCCCCCccccCCcccc-ccccccCcceE----EEE-eccccCCC---CCCCHHHHHHHhhhc--CCcEEEEcCC
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTP-KRRVSGTSIYF----ESM-PYRLDEST---GLVDYDMLEKTAILF--RPKLIIAGAS 260 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~-~~~~~~~g~~~----~~i-~~~~~~~~---~~iD~d~le~~i~~~--~pklIi~~~s 260 (385)
..+|+...-.| ||+-.. ...++..+... ... +-...... ...|++++++.+... +..+||+.+.
T Consensus 136 r~~ii~~~~~y-----HG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv 210 (433)
T PRK00615 136 RSIIIKFLGCY-----HGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPI 210 (433)
T ss_pred CCEEEEEcCcc-----CCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCC
Confidence 45677655332 342100 00111111000 000 00000000 123788999888543 3456777642
Q ss_pred --CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-cCCCC-CCcEEEECCCccCc-cccEEEEEEeCCCC
Q 016668 261 --AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPV 331 (385)
Q Consensus 261 --~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~p~~-gaDiv~~S~hK~l~-GprgG~I~~~~~~~ 331 (385)
..+...+ +++|+++|++||+++|+|++| .|+..+... ..-+. ..|+++ +.|.+. |..+|++++++
T Consensus 211 ~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~-tG~R~G~~ga~~~~gv~PDi~~--~gK~lggG~p~~av~~~~--- 284 (433)
T PRK00615 211 CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVV-TGFRVAQGGAAAIYHVKPDITV--YGKILGGGLPAAAVVAHK--- 284 (433)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc-ccccccHhHHHHhcCCCCCeEE--EcccccCCcceeeeeecH---
Confidence 1232233 679999999999999999999 576222111 11122 457776 579996 45688888887
Q ss_pred chhHHHHHHhh--ccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 332 LGVELESAINN--AVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 332 ~~~~~~~~i~~--~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.+.+.. ..+.+..-+.++..+++...+|+.+.+++.
T Consensus 285 ---~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~ 324 (433)
T PRK00615 285 ---SIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGF 324 (433)
T ss_pred ---HHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccH
Confidence 57666632 122221212345556666667877766554
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.7e-08 Score=98.48 Aligned_cols=235 Identities=16% Similarity=0.084 Sum_probs=124.5
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~---- 190 (385)
+|.|.+++.+.+.. ....... . + .++ .+....+++.+++....+ ...+.+||++|+.+++.....
T Consensus 60 ~p~v~~ai~~q~~~-~~~~~~~-~-~-~~~----~~~~la~~l~~~~p~~~~---~v~f~~sGseA~e~A~klar~~~~~ 128 (423)
T PRK05964 60 HPYIDQAIREQLDR-LDHVIFA-G-F-THE----PAERLAQRLVALTPGGLD---HVFFSDSGSVAVEVALKMALQYWRN 128 (423)
T ss_pred CHHHHHHHHHHHhh-CCCcccc-c-c-CCH----HHHHHHHHHHHhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 68888888777643 2111100 0 1 122 222345567777742221 135678999999998875421
Q ss_pred ---C-CCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCCCCCCCHHHHHHHhhhc--CC
Q 016668 191 ---P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDESTGLVDYDMLEKTAILF--RP 252 (385)
Q Consensus 191 ---p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~~~~iD~d~le~~i~~~--~p 252 (385)
+ ..+|+...-.| ||.... .++..+. .+..++++.+ +....+++.+++.+.+. +.
T Consensus 129 ~~~~~r~~ii~~~~~y-----HG~t~~--~ls~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~l~~~l~~~~~~i 200 (423)
T PRK05964 129 RGEPGRSRFLSLRGGY-----HGDTIG--TMSVGDRGGMHALYTPLLFEQVTAPFPPD-GYEQATLDALEALLEKHAGEI 200 (423)
T ss_pred cCCCCCcEEEEEcCCc-----CCccHH--HHhcCCCccccccccCcCCCCEEeCCCcc-hhHHHHHHHHHHHHHhCCCcE
Confidence 2 35788776433 332100 0111110 1122333211 00112378888887532 34
Q ss_pred cEEEEcCC-C--CCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccCccc--c
Q 016668 253 KLIIAGAS-A--YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRGP--R 320 (385)
Q Consensus 253 klIi~~~s-~--~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l~Gp--r 320 (385)
..|++.+. . .+. ...+++|+++|+++|+++|+|++| .|+...|.. . ..+. ..|++++ .|+|.|. +
T Consensus 201 aavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tg~gr~G~~~a~~~~~v~pDi~~~--~K~l~gG~~p 277 (423)
T PRK05964 201 AAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIA-TGFGRTGTLFACEQAGVSPDIMCL--SKGLTGGYLP 277 (423)
T ss_pred EEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCcCcchhHHHhcCCCCCeeee--ehhhhcCccc
Confidence 46677541 1 222 223899999999999999999999 565333321 1 1112 4577654 5999543 5
Q ss_pred EEEEEEeCCCCchhHHHHHHhhc------cCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 321 GGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~------~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
.|++++++ ++.+.+... .+.+.. +.++..+++...+++.+..+++.+...+
T Consensus 278 ~~av~~~~------~i~~~~~~~~~~~~~~~~~T~-~~np~~~aaa~a~l~~l~~~~~~~~~~~ 334 (423)
T PRK05964 278 LAATLCTA------EIFEAFYSDDRAKAFMHSPSY-TANPLACAAANASLDLFEDEPVLERVAA 334 (423)
T ss_pred ceEEEEcH------HHHHhhhcCCcccccccCCCC-CcCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 67777776 576666421 111222 2455566666667877766655444333
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7e-08 Score=94.65 Aligned_cols=271 Identities=17% Similarity=0.190 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHhh-hccccc-------cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016668 89 EVCEIITKEKERQF-KSLELI-------ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (385)
Q Consensus 89 ~~~~~i~~e~~~~~-~~l~Li-------asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~l 160 (385)
-++.+.+.-++..+ +.++|- ....+.-+.|.+|-...+.......|-+ ..|.+ .+.+. ...-+
T Consensus 12 pIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~---i~G~~---~f~~~---~~~ll 82 (396)
T COG1448 12 PILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLP---IEGLP---EFLEA---VQKLL 82 (396)
T ss_pred chhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCC---cCCcH---HHHHH---HHHHh
Confidence 35666666555555 557765 3455567888888766555444333333 23433 44432 23457
Q ss_pred cCCC-----CCCCcceeecCCcHHHHHHHHHHh--ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC
Q 016668 161 FNLD-----ENKWGVNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (385)
Q Consensus 161 fg~~-----~~~~~~~V~~~sGs~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (385)
||.+ ...+ +.+|+.+||-|+..+..-+ ..|..+|.+++|..+-|.. .....|.+++..+| .|.
T Consensus 83 FG~d~~~l~~~Rv-~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~--------If~~aGl~v~~Y~Y-yd~ 152 (396)
T COG1448 83 FGADSPALAEDRV-ATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKA--------IFEAAGLEVETYPY-YDA 152 (396)
T ss_pred cCCCcHHHHhhhH-hheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHH--------HHHhcCCceeeeec-ccc
Confidence 8855 2223 5689999999887765444 5678889999998766532 23456776666665 465
Q ss_pred CCCCCCHHHHHHHhhhcCC-cEEEE-cCCCCCCCC-----CHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-
Q 016668 234 STGLVDYDMLEKTAILFRP-KLIIA-GASAYPRDF-----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK- 303 (385)
Q Consensus 234 ~~~~iD~d~le~~i~~~~p-klIi~-~~s~~~~~~-----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~- 303 (385)
++..+|++.+-..++.... .+|++ +..|||+-. .+++|.++.++.|.+-+.|.|+ -|+-. |.-. ..+.
T Consensus 153 ~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AY-QGF~~-GleeDa~~lR~ 230 (396)
T COG1448 153 ETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAY-QGFAD-GLEEDAYALRL 230 (396)
T ss_pred ccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhh-hhhcc-chHHHHHHHHH
Confidence 6778999998877765333 34554 344666533 3789999999999999999995 44422 1110 1111
Q ss_pred ----CCc-EEEECCCccC--ccccEEE-EEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHH-----HHHHhhCc
Q 016668 304 ----YCD-VVTTTTHKSL--RGPRGGM-IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAV-----CLKHAQSP 370 (385)
Q Consensus 304 ----gaD-iv~~S~hK~l--~GprgG~-I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~-----Al~e~~~~ 370 (385)
+-. ++++|++|+| .|-|.|. .+.-++......+.+.+...+ ..+.++|..|..+-.+. .|++....
T Consensus 231 ~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~i-R~~ySnPP~~Ga~vva~IL~~p~Lra~W~~ 309 (396)
T COG1448 231 FAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAII-RTNYSNPPAHGAAVVATILNNPELRAEWEQ 309 (396)
T ss_pred HHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHH-HhccCCCchhhHHHHHHHhCCHHHHHHHHH
Confidence 232 6899999996 7788653 333322100001222222222 23456777776655554 45555555
Q ss_pred hHHHHHHHHhc
Q 016668 371 EFKVYQNKSAC 381 (385)
Q Consensus 371 ~~~~y~~~v~~ 381 (385)
|...++.++.+
T Consensus 310 El~~Mr~Ri~~ 320 (396)
T COG1448 310 ELEEMRQRILE 320 (396)
T ss_pred HHHHHHHHHHH
Confidence 55566665544
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-07 Score=96.75 Aligned_cols=231 Identities=17% Similarity=0.142 Sum_probs=118.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCC-CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYG-GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~-G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--- 189 (385)
-+|.|.+++...+.. +..+. +++. .++...+ ..++++++++...+ ..++++|||+||.+++....
T Consensus 71 ~hp~v~~A~~~q~~~-~~~~~---~~~~~~~~~~~~----lae~L~~~~p~~~~---~v~f~~SGseA~e~AiklAr~~~ 139 (460)
T PRK12403 71 GRKDLAAAAARQMEQ-LPYYN---MFFHTTHPAVIE----LSELLFSLLPGHYS---HAIYTNSGSEANEVLIRTVRRYW 139 (460)
T ss_pred CCHHHHHHHHHHHHh-CCCee---cccccCCHHHHH----HHHHHHHhCCCCcC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence 468899998877653 32211 1222 2332222 44567788864321 24667899999999987663
Q ss_pred ----cCCCEEeecCCCCCccccCCccccccccccCcce-----------EEEEecccc----CCCC-----CCCHHHHHH
Q 016668 190 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----------FESMPYRLD----ESTG-----LVDYDMLEK 245 (385)
Q Consensus 190 ----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----------~~~i~~~~~----~~~~-----~iD~d~le~ 245 (385)
++++.+++.... ++ ||+... .++..+.. +..++++.. .+.. ..+++++++
T Consensus 140 ~~~g~~~r~~ii~~~~--~y--HG~t~~--~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~ 213 (460)
T PRK12403 140 QVLGKPQKKIMIGRWN--GY--HGSTLA--ATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEE 213 (460)
T ss_pred HhhCCCCCcEEEEECC--Cc--CcccHh--hhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHH
Confidence 233444433221 22 333110 11111111 112221110 0000 011355665
Q ss_pred Hhhh---cCCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEECCC
Q 016668 246 TAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTH 313 (385)
Q Consensus 246 ~i~~---~~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S~h 313 (385)
.+.+ .+...||+.+. ..+...+ +++|+++|+++|++||+|++| .|+--.|.. ..-++ ..|+++ +.
T Consensus 214 ~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~-tGfGRtG~~~a~e~~gv~PDiv~--~g 290 (460)
T PRK12403 214 KILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVI-GGFGRTGEWFAHEHFGFEPDTLS--IA 290 (460)
T ss_pred HHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCchhhhhhhcCCCCCeEE--Ec
Confidence 5532 23446777542 2233344 899999999999999999999 454222321 11122 358886 56
Q ss_pred ccCc-c--ccEEEEEEeCCCCchhHHHHHHhh--ccC--CCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 314 KSLR-G--PRGGMIFFKKDPVLGVELESAINN--AVF--PGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 314 K~l~-G--prgG~I~~~~~~~~~~~~~~~i~~--~~f--p~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
|.|. | |-||++ +++ ++.+.+.. ..| ..+++ .++...|+..++|+.+.++++
T Consensus 291 K~lggG~~Piga~v-~~~------~i~~~~~~~~~~~~~~~T~~-gnPl~~Aaala~L~~i~~~~l 348 (460)
T PRK12403 291 KGLTSGYVPMGGLV-LSK------RIAEALVEQGGVFAHGLTYS-GHPVAAAVAIANLKALRDEGV 348 (460)
T ss_pred ccccccccceEEEE-ECH------HHHHHHhcCCCccccCCCCC-CCHHHHHHHHHHHHHHHhccH
Confidence 9985 4 455555 555 56555532 112 22333 345566666667877766554
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-07 Score=95.95 Aligned_cols=234 Identities=15% Similarity=0.006 Sum_probs=124.8
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
+|.+.+++...+.+ ....+.. ..+++ ...+ ..+++.++.+.+..+ ..++.+||++|+..++... ....
T Consensus 59 ~~~i~~a~~~~~~~-~~~~~~~---~~~~~---~~~~-la~~l~~~~~~~~~~--~~~f~~sGsea~e~Alklar~~~~r 128 (425)
T PRK08088 59 HPKVVAAVEAQLKK-LSHTCFQ---VLAYE---PYLE-LCEKMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAATKR 128 (425)
T ss_pred CHHHHHHHHHHHhh-CCCcccc---ccCCH---HHHH-HHHHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHHhCC
Confidence 78888888777653 2111111 11222 1222 345567776643211 2467889999988887654 2234
Q ss_pred CEEeecCCCCCccccCCccccccccc------cCc-----ceEEEEeccccCCCCCC--CHHHHHHHhh----hcCCcEE
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVS------GTS-----IYFESMPYRLDESTGLV--DYDMLEKTAI----LFRPKLI 255 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~------~~g-----~~~~~i~~~~~~~~~~i--D~d~le~~i~----~~~pklI 255 (385)
.+|+..++.|- |.......+. ..+ ..+...+++.+..+... +++++++.++ ..++.+|
T Consensus 129 ~~iv~~~~~yH-----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aav 203 (425)
T PRK08088 129 SGVIAFTGAYH-----GRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAI 203 (425)
T ss_pred CeEEEECCccC-----CccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEE
Confidence 45666665432 2210000000 000 00112223222111111 1556888775 1345677
Q ss_pred EEcCCC-CC-CCC----CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccC-ccccEEEEEE
Q 016668 256 IAGASA-YP-RDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRGGMIFF 326 (385)
Q Consensus 256 i~~~s~-~~-~~~----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l-~GprgG~I~~ 326 (385)
++.+.. ++ ... .+++|.++|+++|+++|.|++|. |+...|... .++ +.+.-+.|++|.+ +|.|.|++++
T Consensus 204 i~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~-g~g~~g~~~-~~~~~~~~pdi~s~sK~l~~G~rig~v~~ 281 (425)
T PRK08088 204 IIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT-GAGRTGTLF-AMEQMGVAADLTTFAKSIAGGFPLAGVTG 281 (425)
T ss_pred EECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcchh-HHhhcCCCCCEEEEeccccCCCcceeeEe
Confidence 776432 22 222 38999999999999999999985 543333221 222 2223357788998 5678899999
Q ss_pred eCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 327 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 327 ~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++ ++.+.+.........+ .+....++....++....+++
T Consensus 282 ~~------~~~~~~~~~~~~~t~~-~~~~~~~a~~~~l~~~~~~~~ 320 (425)
T PRK08088 282 RA------EVMDAIAPGGLGGTYA-GNPIACAAALAVLKVFEQENL 320 (425)
T ss_pred cH------HHHhhcCCCCCCCCCC-cCHHHHHHHHHHHHHHHhcCH
Confidence 87 6777775544433343 344455566667776654444
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-07 Score=95.02 Aligned_cols=232 Identities=16% Similarity=0.093 Sum_probs=122.4
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
.+|.|.+++...+.+-.. .. +++ .++ ......+++.+++....+ ...+++|||+|+..++....
T Consensus 92 ~hp~v~~Av~~ql~~l~~---~~-~~~-~~~----~~~~lAe~L~~~~p~~~~---~v~f~~SGsEA~e~AlklAr~~t~ 159 (442)
T TIGR03372 92 RNPNVIAAVENQLAKQPL---HS-QEL-LDP----LRALLAKTLAALTPGKLK---YSFFCNSGTESVEAALKLAKAYQS 159 (442)
T ss_pred CCHHHHHHHHHHHHhCCC---cc-ccc-CCH----HHHHHHHHHHHhCCCCcC---EEEEeCCchHHHHHHHHHHHHHHh
Confidence 478999998877753221 11 122 222 222345567777754322 24567899999999887442
Q ss_pred -cCCCEEeecCCCCCccccCCccccccccccCcce-EEEEeccccCCC---CCCCHHHHHHHhhh-----cCCcEEEEcC
Q 016668 190 -KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAIL-----FRPKLIIAGA 259 (385)
Q Consensus 190 -~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~i~~~~~~~~---~~iD~d~le~~i~~-----~~pklIi~~~ 259 (385)
+...+|+...-.| ||+.. ..+...+.. +.....+..+.- -..|.+++++.++. .+...|++.+
T Consensus 160 ~~gr~~ii~~~~~y-----HG~t~--~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEp 232 (442)
T TIGR03372 160 PRGKFTFIAASGAF-----HGKSL--GALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEP 232 (442)
T ss_pred hcCCcEEEEECCCc-----cCCCH--HHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 1245777766433 33210 011121110 000000000000 02467777776642 2345667654
Q ss_pred C--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCcc--ccEEEEEEeC
Q 016668 260 S--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG--PRGGMIFFKK 328 (385)
Q Consensus 260 s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~G--prgG~I~~~~ 328 (385)
. ..+...+ +++++++|+++|+++|+|++| .|+--.|... .-+. ..|+++ +.|.+.| ...|.+++++
T Consensus 233 v~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~-tG~GRtG~~~a~e~~gv~PDivt--~gK~lg~G~~Pigavv~~~ 309 (442)
T TIGR03372 233 IQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQ-TGMGRTGKMFACEHEGVQPDILC--LAKALGGGVMPIGATIATE 309 (442)
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecc-cCCCccccchhhhhcCCCCCeee--ehhhhcCCcccceEEEecH
Confidence 2 2233344 899999999999999999999 4542233211 1122 468876 5799954 2345555665
Q ss_pred CCCchhHHHHHHhhc--cCCCccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 329 DPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~--~fp~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
++.+.+... .+..++++ ++...|+..++|+.+.++++.+
T Consensus 310 ------~i~~~~~~~~~~~~~T~~g-np~~~Aaa~a~L~~i~~~~l~~ 350 (442)
T TIGR03372 310 ------AVFSVLFDNPFLHTTTFGG-NPLACAAALATINELLEKNLPA 350 (442)
T ss_pred ------HHHHhhhccCccccCCCCC-CHHHHHHHHHHHHHHHhccHHH
Confidence 566655322 22223332 3445555555787776665433
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-07 Score=92.79 Aligned_cols=231 Identities=15% Similarity=0.096 Sum_probs=123.4
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--cC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--~p 191 (385)
..|.|.+++...+.. .. +.....+ .++ .+....+++.+++.....+ ..++.+|||+|+..++.... ..
T Consensus 57 ~~p~v~~ai~~ql~~-~~--~~~~~~~-~~~----~~~~la~~l~~~~p~~~~~--~~~f~~sGseA~e~AlklAr~~tg 126 (421)
T PRK09792 57 RHPDLVAAVEQQLQQ-FT--HTAYQIV-PYE----SYVTLAEKINALAPVSGQA--KTAFFTTGAEAVENAVKIARAHTG 126 (421)
T ss_pred CCHHHHHHHHHHHHh-cc--CcccCcc-CCH----HHHHHHHHHHHhCCCCCCc--eEEEeCChHHHHHHHHHHHHHhcC
Confidence 378888888777653 22 1111011 122 2222344566666422101 24567899999999887542 23
Q ss_pred CCEEeecCCCCCccccCCccccccccccCc-------------ceEEEEeccccCCCCC---CCHHHHHHHhhh----cC
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDESTGL---VDYDMLEKTAIL----FR 251 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~i~~~~~~~~~~---iD~d~le~~i~~----~~ 251 (385)
..+|+...-.| ||+... .++..+ ..+..++++.+. ++. -|++.+++.++. .+
T Consensus 127 r~~ii~~~~~y-----HG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 198 (421)
T PRK09792 127 RPGVIAFSGGF-----HGRTYM--TMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLFKSDIEAKQ 198 (421)
T ss_pred CCeEEEECCCc-----CCccHH--HHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHHHhccCCCc
Confidence 45787776433 332100 001111 012334443321 111 135778887752 34
Q ss_pred CcEEEEcCCCCC--C-CCC---HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccE
Q 016668 252 PKLIIAGASAYP--R-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRG 321 (385)
Q Consensus 252 pklIi~~~s~~~--~-~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~Gprg 321 (385)
+++|++.+...+ . ..+ +++|+++|+++|+++|.|+.+ .|+...|... ..+. ..|+ .++.|.| +|.+.
T Consensus 199 iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~~G~pi 275 (421)
T PRK09792 199 VAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQ-SGFARTGKLFAMDHYADKPDL--MTMAKSLAGGMPL 275 (421)
T ss_pred eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCCCCchhHHHhcCCCCcE--EEeehhhcCCCce
Confidence 678888765332 2 224 899999999999999999997 4553344321 1121 3565 4557998 45678
Q ss_pred EEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
|++++++ ++.+.+.......+.+++.....++ .+.++.+.++++
T Consensus 276 gav~~~~------~i~~~~~~~~~~~T~~gnpl~~aaa-~a~l~~l~~~~~ 319 (421)
T PRK09792 276 SGVVGNA------NIMDAPAPGGLGGTYAGNPLAVAAA-HAVLNIIDKESL 319 (421)
T ss_pred EEEEEcH------HHHhccCCCCcCCCCCCCHHHHHHH-HHHHHHHHhhhH
Confidence 8888887 5666665433333343333333333 345555544443
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.1e-08 Score=90.99 Aligned_cols=229 Identities=16% Similarity=0.182 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhh-hccccccCCCCC-cHHHHHHHhhHhhccCCCCCCCC--CCCCCcHHHHHHHHHHHHHHHHHcCCCCC
Q 016668 91 CEIITKEKERQF-KSLELIASENFT-SRAVMEAVGSCLTNKYSEGLPGK--RYYGGNEYIDELETLCQKRALAAFNLDEN 166 (385)
Q Consensus 91 ~~~i~~e~~~~~-~~l~Liasen~~-s~~V~~al~s~l~~~y~~g~p~~--r~~~G~~~~~~le~~~~~~la~lfg~~~~ 166 (385)
-.++++-..-.+ .+..+...-|+. -|++.+.....++.--++|.-.. -.|.|..--+.+-++....+.+-+|.+-.
T Consensus 17 ~~lMdDl~d~Lrt~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit 96 (417)
T COG3977 17 TQLMDDLNDGLRTPGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNIT 96 (417)
T ss_pred HHHHHHHHhhccCCCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCc
Confidence 344444433344 444444555554 57777766555443333331110 01333322334444555667788887643
Q ss_pred CCcceeecCCcHH-HHHHHHHHhc---cCCC--EEe-ecCCCCCccccCCccccccccccCc-ceEEEEe-ccccCC---
Q 016668 167 KWGVNVQPLSGSP-ANFEVYTAIL---KPHD--RIM-GLDLPHGGHLSHGFMTPKRRVSGTS-IYFESMP-YRLDES--- 234 (385)
Q Consensus 167 ~~~~~V~~~sGs~-A~~~a~~all---~pGD--~Vl-~~~~~~ggh~s~~~~~~~~~~~~~g-~~~~~i~-~~~~~~--- 234 (385)
+ -|+..|+||+ |.+.++.-+- ..|+ +|+ -+.|+|-|+-.-+ .-+ ..+...| .++.+.
T Consensus 97 ~--~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~---------l~~d~fVs~kP~iel~~~g~F 165 (417)
T COG3977 97 A--QNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAG---------LEEDLFVSAKPNIELLPAGQF 165 (417)
T ss_pred c--ceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccc---------cCccceeeccCCcccccccce
Confidence 2 3788899997 7766665553 3454 343 3356665542211 111 1111111 122222
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-----CCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC---CCc
Q 016668 235 TGLVDYDMLEKTAILFRPKLIIAGASAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCD 306 (385)
Q Consensus 235 ~~~iD~d~le~~i~~~~pklIi~~~s~~~~-----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~---gaD 306 (385)
..++|+++++-. ..+.+|+++-|.+|+ ...+.+|.++|++||+.|++|+|++. -+.+...+... +-.
T Consensus 166 KY~vDF~~l~i~---e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~--PFP~iifsd~~~~w~~N 240 (417)
T COG3977 166 KYHVDFEHLHIG---ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGV--PFPGIIFSDATPLWNEN 240 (417)
T ss_pred eeccCHHHcccc---cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCC--CCCceecccccccCCCC
Confidence 237899888642 257788888777663 34578889999999999999999743 23332222222 334
Q ss_pred -EEEECCCcc-CccccEEEEEEeCCCCchhHHHHHHh
Q 016668 307 -VVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 307 -iv~~S~hK~-l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
+.++|++|. |+|-|.|+++.+. ++...+.
T Consensus 241 iilC~SLSK~GLPG~R~GIiIane------~viqait 271 (417)
T COG3977 241 IILCMSLSKLGLPGSRCGIIIANE------KVIQAIT 271 (417)
T ss_pred EEEEeehhhcCCCCcceeEEEccH------HHHHHHH
Confidence 679999996 6888999999988 5666654
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-07 Score=92.05 Aligned_cols=232 Identities=15% Similarity=0.034 Sum_probs=124.3
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
.+|.|.+++...+.+.. +....++ .++ .+..+.+++.+++....+ ...+++|||+|+.+++... ...
T Consensus 58 ~~p~v~~Ai~~ql~~~~---~~~~~~~-~~~----~~~~la~~L~~~~p~~~~---~v~f~~sGsEAve~AlklAr~~tg 126 (443)
T PRK08360 58 NNPRVVKAIKEQTDKLI---HYTPIYG-FPV----EPLLLAEKLIEIAPGDNP---KVSFGLSGSDANDGAIKFARAYTK 126 (443)
T ss_pred CCHHHHHHHHHHHHhcc---Ccccccc-CcH----HHHHHHHHHHHhCCCCCC---EEEEcCCHHHHHHHHHHHHHHhcC
Confidence 37888888887765321 1111111 122 222244567777754422 2356688999999988754 233
Q ss_pred CCEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCC-CC--------CCCHHHHHHHhhh-
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDES-TG--------LVDYDMLEKTAIL- 249 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~-~~--------~iD~d~le~~i~~- 249 (385)
..+|+...-.| ||+-.. .++..+ ..+..++++-... .+ ..+++.+++.++.
T Consensus 127 r~~ii~~~~~y-----HG~t~~--a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (443)
T PRK08360 127 RRKILSYLRSY-----YGSTYG--AMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGE 199 (443)
T ss_pred CCeEEEEeCCc-----CCcCHH--HHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhc
Confidence 45676654322 232100 001111 0122333321000 00 0234556666642
Q ss_pred ---cCCcEEEEcCCCC--CCCC----CHHHHHHHHHHcCcEEEEeccccccccccCcccC--CCC-CCcEEEECCCccC-
Q 016668 250 ---FRPKLIIAGASAY--PRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFK-YCDVVTTTTHKSL- 316 (385)
Q Consensus 250 ---~~pklIi~~~s~~--~~~~----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~~-gaDiv~~S~hK~l- 316 (385)
.+++.|++.+..+ +... -+++|.++|+++|+++|+|++|. |+...|.... .+. ..|+++ ++|.+
T Consensus 200 ~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~G~~~a~~~~~~~pDiit--lsK~l~ 276 (443)
T PRK08360 200 VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQS-GLGRTGKWFAIEHFGVEPDIIT--LGKPLG 276 (443)
T ss_pred cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCccchhhhhcCCCCCEEE--eccccc
Confidence 3567888875322 2222 28999999999999999999984 5543443211 122 347764 48998
Q ss_pred ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 317 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 317 ~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
.|.+.|++++++ ++.+.+.........+++... .++...+++.+.++++.
T Consensus 277 ~G~pigav~~~~------~i~~~~~~~~~~~T~~~~p~~-~aaa~a~l~~l~~~~l~ 326 (443)
T PRK08360 277 GGLPISATIGRA------EIMDSLPPLAHAFTLSGNPVA-SAAALAVIEEIEEKNLL 326 (443)
T ss_pred CCceeEEEEEcH------HHHhhhcCCCCCCCCCcCHHH-HHHHHHHHHHHHHcCHH
Confidence 567889999887 577766543333333333333 55555577776665543
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-07 Score=95.96 Aligned_cols=238 Identities=16% Similarity=0.088 Sum_probs=124.2
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCCCCCcceeecCCcHHHHHHHHHHhc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg-~~~~~~~~~V~~~sGs~A~~~a~~all--- 189 (385)
-+|.|.+++.+.+.. ....... +...++ .+....+++.+++. .+.+ ...+++||++||.+++....
T Consensus 106 ~hp~v~~Av~~ql~~-~~~~~~~--~~~~~~----~~~~lae~L~~~~~~~~~~---~v~f~~SGsEA~e~AlKlAr~~~ 175 (504)
T PLN02760 106 SEPRLVAAATEQLNK-LPFYHSF--WNRTTK----PSLDLAKELLEMFTARKMG---KVFFTNSGSEANDTQVKLVWYYN 175 (504)
T ss_pred CCHHHHHHHHHHHhh-ccceecc--cccCcH----HHHHHHHHHHhhcCCCCCC---EEEEeCChHHHHHHHHHHHHHHH
Confidence 379999999888753 3211110 011222 22223456667653 3321 23557899999999988663
Q ss_pred ----cCC-CEEeecCCCCCccccCCccccccccccCcce------------EEEEecccc-----CCCC-----CCCHHH
Q 016668 190 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY------------FESMPYRLD-----ESTG-----LVDYDM 242 (385)
Q Consensus 190 ----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~------------~~~i~~~~~-----~~~~-----~iD~d~ 242 (385)
.+| ++|+..+-.| ||+.. ..+++.|.. +..++++.. +... ...+++
T Consensus 176 ~~~g~~~r~~iI~~~~~y-----HG~t~--~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 248 (504)
T PLN02760 176 NALGRPNKKKFIARSKSY-----HGSTL--ISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADN 248 (504)
T ss_pred HhcCCCCCcEEEEECCCc-----cCChH--hhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHH
Confidence 132 5777766332 33311 011112210 111121100 0000 011245
Q ss_pred HHHHhhh---cCCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccc-cccccccCcccCCCC-CCcEEEEC
Q 016668 243 LEKTAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAH-ISGLVAASVVADPFK-YCDVVTTT 311 (385)
Q Consensus 243 le~~i~~---~~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah-~~Gli~~g~~~~p~~-gaDiv~~S 311 (385)
+++.+.. .++..||+.+. ..+...+ +++|+++|+++|+++|+|++| +.|-........-++ ..|++++
T Consensus 249 le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl- 327 (504)
T PLN02760 249 LENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSL- 327 (504)
T ss_pred HHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEe-
Confidence 7766632 23456777642 1233444 999999999999999999998 344432211111112 3687665
Q ss_pred CCccCcc---ccEEEEEEeCCCCchhHHHHHHhhc-------cCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 312 THKSLRG---PRGGMIFFKKDPVLGVELESAINNA-------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 312 ~hK~l~G---prgG~I~~~~~~~~~~~~~~~i~~~-------~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
.|.|.| |-|+ +++++ ++.+.+... ....++++ ++..+++...+|+.+.++++.+..++
T Consensus 328 -gK~lggG~~PigA-v~~~~------~i~d~~~~~~~~~~~~~h~~T~~g-nPl~~Aaala~Le~i~~~~l~~~~~~ 395 (504)
T PLN02760 328 -AKALSSAYMPIGA-VLVSP------EISDVIHSQSNKLGSFAHGFTYSG-HPVSCAVALEALKIYKERNIPEHVNK 395 (504)
T ss_pred -cccccCCccccce-EeecH------HHHhhhhcccccccCcccCCCCCC-CHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 599965 4455 66666 566666421 12234444 45555555567887777666544443
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-07 Score=93.59 Aligned_cols=222 Identities=14% Similarity=0.069 Sum_probs=124.9
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
+|.|.+++...+..-...+. .+ +.+....+++.++++.+. ..+++|||+|+..++... ....
T Consensus 93 ~p~i~~Av~~q~~~~~~~~~-------~~----~~~~~lAe~l~~~~~~~~-----v~F~nSGtEA~e~AlrlAR~~TGr 156 (453)
T PRK07046 93 PAPVARALAEQARRGLTTML-------PS----EDAAWVGEELARRFGLPY-----WQVATTATDANRFVLRWARAVTGR 156 (453)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------CC----HHHHHHHHHHHHHhCCCE-----EEEECCHHHHHHHHHHHHHHhhCC
Confidence 68888888877754221111 12 233335567777776543 356789999999988754 2345
Q ss_pred CEEeecCCCCCccccCCccccc-------cc---cccCcceE----EEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPK-------RR---VSGTSIYF----ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~-------~~---~~~~g~~~----~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~ 258 (385)
++|+...-.| ||+.... .. ....|... ....+ ...|++.+++.+...+...||+.
T Consensus 157 ~~ii~~~g~Y-----HG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~nd~~~l~~~l~~~~vAavi~E 225 (453)
T PRK07046 157 PKILVFNGCY-----HGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVV------EFNDLAALEAALADGDVAAVLAE 225 (453)
T ss_pred CEEEEECCCC-----CCCcHHhHhhccCCCCCCCCCCCCCCccccCceEee------CCCCHHHHHHHhCCCCeEEEEEC
Confidence 7788765333 3331000 00 00011100 00110 02388999988854456677776
Q ss_pred CCC--CCCCC----CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCc-cccEEEEEEeCCC
Q 016668 259 ASA--YPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDP 330 (385)
Q Consensus 259 ~s~--~~~~~----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~-GprgG~I~~~~~~ 330 (385)
+.. .+... -+++++++|+++|+++|.|+.+..++-.+| ...-++ ..|+++ +.|.+. |...|.+++++
T Consensus 226 Pi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg-~~~~~gv~PDi~t--~gK~lggG~Pi~av~g~~-- 300 (453)
T PRK07046 226 PAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGG-YTRAHGLEPDFLV--VGKPIAGGVPCAVYGFSA-- 300 (453)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcc-hhHHhCCCcccee--ehhhhcCCCcceeeeehH--
Confidence 432 12221 289999999999999999999863221222 221122 468876 469985 44567788877
Q ss_pred CchhHHHHHHhhcc---------CCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 331 VLGVELESAINNAV---------FPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 331 ~~~~~~~~~i~~~~---------fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
++.+.+.... ..++. +.++..+++..++|+.+.+++..
T Consensus 301 ----~i~~~~~~~~~~~~~~~~~~~~T~-~gnpl~~aa~~a~L~~l~~~~~~ 347 (453)
T PRK07046 301 ----ELAERAQAAKASAPPGHSGIGTTL-SANALAMAAMRATLAEVMTEAAY 347 (453)
T ss_pred ----HHHHHHhhccccCCCCCceeCCCC-cccHHHHHHHHHHHHHHhcccHH
Confidence 5766664211 11122 23444566656677777666553
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-07 Score=94.01 Aligned_cols=231 Identities=19% Similarity=0.159 Sum_probs=120.9
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
+|.|.+++...+..-...+ ..+ +.+....+++.+.+..-. -..++.|||+|+..++... ....
T Consensus 117 ~p~v~~av~~ql~~~~~~~-------~~~----~~~~~lAe~l~~~~p~~~----~v~f~~SGsEA~e~AlklAR~~tgr 181 (474)
T PLN02482 117 DDEVLAALAETMKKGTSFG-------APC----LLENVLAEMVIDAVPSVE----MVRFVNSGTEACMGVLRLARAYTGR 181 (474)
T ss_pred CHHHHHHHHHHHhhCCCCC-------CCC----HHHHHHHHHHHHhCCCCC----EEEEeCChHHHHHHHHHHHHHhcCC
Confidence 6999999988875422111 112 233334566777764211 1355789999999988754 2334
Q ss_pred CEEeecCCCCCccccCCccccccccccCcce------EEEEeccccCCC---CCCCHHHHHHHhhhc--CCcEEEEcCC-
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY------FESMPYRLDEST---GLVDYDMLEKTAILF--RPKLIIAGAS- 260 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~------~~~i~~~~~~~~---~~iD~d~le~~i~~~--~pklIi~~~s- 260 (385)
++|+...-.| ||+..........+.. ..-++....++. ..-|++++++.++.+ +..+||+.+.
T Consensus 182 ~~Ii~~~g~Y-----HG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~ 256 (474)
T PLN02482 182 EKIIKFEGCY-----HGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVV 256 (474)
T ss_pred CEEEEECCcc-----CCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCC
Confidence 6777765332 4421000000000000 000000000000 023789999888643 3456776543
Q ss_pred -CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-cCCCC-CCcEEEECCCccCcc-ccEEEEEEeCCCCc
Q 016668 261 -AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVL 332 (385)
Q Consensus 261 -~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~p~~-gaDiv~~S~hK~l~G-prgG~I~~~~~~~~ 332 (385)
+.+...+ +++|+++|+++|++||+|++| .|+..+... ..-+. ..|++++ .|.+.| ...|.+++++
T Consensus 257 g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~-tGfR~g~~ga~~~~gv~PDi~t~--gK~lggG~Pigav~g~~---- 329 (474)
T PLN02482 257 GNSGFIVPKKEFLEGLREITKENGALLVFDEVM-TGFRIAYGGAQEYFGITPDLTTL--GKVIGGGLPVGAYGGRR---- 329 (474)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCeecCcchHhHHhCCCCCEEEe--cchhhCCCceEEEEEcH----
Confidence 1222222 779999999999999999999 576322111 11122 4577654 699954 3345557776
Q ss_pred hhHHHHHHhhc--cCC-CccCCChHHHHHHHHHHHHHhhCchHHHH
Q 016668 333 GVELESAINNA--VFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVY 375 (385)
Q Consensus 333 ~~~~~~~i~~~--~fp-~~qg~p~~~~iaala~Al~e~~~~~~~~y 375 (385)
++.+.+... .+. ++.+ .++..+++...+|+.+.+++..+.
T Consensus 330 --ei~~~~~~~~~~~~~~T~~-gnpl~~aAala~L~~l~~~~~~~~ 372 (474)
T PLN02482 330 --EIMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLQQPGTYEY 372 (474)
T ss_pred --HHHHhhccCCCcccccCcc-hhHHHHHHHHHHHHHHhccCHHHH
Confidence 576666421 122 2222 344455555557777766555333
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.7e-07 Score=90.58 Aligned_cols=236 Identities=20% Similarity=0.160 Sum_probs=122.6
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc--
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-- 190 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~-- 190 (385)
...|.|.+++...+.+ ...... +...++ .+....+++.+++....+ ...+.+|||+|+..++.....
T Consensus 62 h~~p~v~~ai~~ql~~-l~~~~~---~~~~~~----~~~~la~~l~~~~p~~~~---~v~f~~sGseA~e~AlklAr~~~ 130 (442)
T PRK13360 62 HGRPEIVEAVRAQAGE-LDYAPA---FQMGHP----KAFELANRIAEIAPGGLN---HVFFTNSGSESVDTALKIALAYH 130 (442)
T ss_pred CCCHHHHHHHHHHHHh-CCCccc---CCcCCH----HHHHHHHHHHHhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence 3468888888877643 221111 111233 222345567777642221 235678999999998864321
Q ss_pred -----C-CCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCCC--CC--------CCHHH
Q 016668 191 -----P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDEST--GL--------VDYDM 242 (385)
Q Consensus 191 -----p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~~--~~--------iD~d~ 242 (385)
+ ..+|+...-.| ||+-. ..++..|. .+..+|++.+... .. -+.++
T Consensus 131 ~~~g~~~r~~ii~~~~~y-----HG~t~--gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 203 (442)
T PRK13360 131 RARGEGSRTRLIGRERGY-----HGVGF--GGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADE 203 (442)
T ss_pred HhcCCCCCcEEEEEcCCc-----CCccH--hhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHH
Confidence 2 35788776433 33210 01111110 1122332211000 00 02467
Q ss_pred HHHHhhhc---CCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEE
Q 016668 243 LEKTAILF---RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTT 310 (385)
Q Consensus 243 le~~i~~~---~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~ 310 (385)
++++++.. ++.+|++.+. ..+...+ +++|+++|+++|+++|+|++|. |+.-.|.. ..-++ ..|+++
T Consensus 204 le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDivt- 281 (442)
T PRK13360 204 LERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVIT-GFGRLGAPFAAQYFGVTPDLLT- 281 (442)
T ss_pred HHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCccchhhhhcCCCCceee-
Confidence 77777532 3346676542 1233444 8999999999999999999993 43222221 11122 457774
Q ss_pred CCCccCcc---ccEEEEEEeCCCCchhHHHHHHhhc------cC-CCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 311 TTHKSLRG---PRGGMIFFKKDPVLGVELESAINNA------VF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 311 S~hK~l~G---prgG~I~~~~~~~~~~~~~~~i~~~------~f-p~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
+.|.|.| |-|+ +++++ ++.+.+... .+ ..+.+ .++...++...+|+.+.++++.+..+
T Consensus 282 -~gK~l~gG~~P~ga-v~~~~------~i~~~~~~~~~~~~~~~~~~T~~-g~pl~~aaa~a~L~~l~~~~l~~~~~ 349 (442)
T PRK13360 282 -CAKGLTNGAIPMGA-VFVSS------EIHDAFMQGPEAGIEFFHGYTYS-GHPLACAAALATLDLYEREGLLTRAA 349 (442)
T ss_pred -eeeccccCccceEE-EEEcH------HHHHHhhcCCccccccccCCCCC-CCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4699953 4444 66665 465555331 11 22333 35555666666888877666544333
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-07 Score=95.42 Aligned_cols=233 Identities=14% Similarity=0.053 Sum_probs=122.1
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
-+|.|.+++...+.+ ... +.. ....++ ......+++.+++.....+ ..++++||++|+..++... ...
T Consensus 73 ~~p~v~~ai~~q~~~-~~~-~~~--~~~~~~----~~~~la~~l~~~~p~~~~~--~v~f~~sGseA~e~AlklAr~~tg 142 (443)
T PRK06058 73 SAPRVVEAVREQVAR-FTH-TCF--MVTPYE----GYVAVAEQLNRLTPGDHEK--RSALFNSGAEAVENAVKIARSYTG 142 (443)
T ss_pred CCHHHHHHHHHHHHh-ccC-ccc--cccCCH----HHHHHHHHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHhhC
Confidence 478999998877753 211 110 001122 2222455677777532111 2456789999999988732 233
Q ss_pred CCEEeecCCCCCccccCCccccccccccCc-------------ceEEEEecc--ccC-CCCCCC--------HHHHHHHh
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYR--LDE-STGLVD--------YDMLEKTA 247 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~i~~~--~~~-~~~~iD--------~d~le~~i 247 (385)
.++|+..+..| ||+... .+...+ ..+...+++ .+. .....+ .+.+++.+
T Consensus 143 r~~ii~~~~~y-----HG~t~~--al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 215 (443)
T PRK06058 143 RQAVVVFDHAY-----HGRTNL--TMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQV 215 (443)
T ss_pred CCeEEEECCCc-----CcChHH--HHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhh
Confidence 47888876543 332100 011000 001112211 110 000111 22333333
Q ss_pred hhcCCcEEEEcCCC--CCCC----CCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-c
Q 016668 248 ILFRPKLIIAGASA--YPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-R 317 (385)
Q Consensus 248 ~~~~pklIi~~~s~--~~~~----~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~ 317 (385)
...++..|++.+.. .+.. .-+++|+++|+++|+++|.|+.+. |+.-.|... .-++ ..|+++++ |.+ .
T Consensus 216 ~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-GfgRtG~~fa~~~~gv~PDiv~~g--K~l~~ 292 (443)
T PRK06058 216 GADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT-GFARTGAWFACEHEGIVPDLITTA--KGIAG 292 (443)
T ss_pred CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcChhhhHHHhcCCCCCEEEEc--ccccC
Confidence 22356677775421 1222 238999999999999999999984 653333211 1122 35888775 998 4
Q ss_pred cccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 318 GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 318 GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
|.+.|++++++ ++.+.+.......+.+ .++...++...+|+.+.+++..
T Consensus 293 G~Pi~av~~~~------~i~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~~~~~~l~ 341 (443)
T PRK06058 293 GLPLSAVTGRA------EIMDAPHPGGLGGTYG-GNPVACAAALAAIETIEEDDLV 341 (443)
T ss_pred CCccEEEEEcH------HHHhhccCCCCCCCCC-CCHHHHHHHHHHHHHHHHcCHH
Confidence 56678888877 5666665433323333 4444555556677776665553
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-07 Score=92.95 Aligned_cols=232 Identities=15% Similarity=0.094 Sum_probs=124.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
-+|.|.+++...+.+ ... .....+ .++ ... ...+++.+++.....+ ..++++|||+|+..++... ...
T Consensus 57 ~~p~v~~ai~~ql~~-~~~--~~~~~~-~~~---~~~-~la~~l~~~~p~~~~~--~~~f~~sGseA~e~AlklAr~~tg 126 (421)
T PRK06777 57 RHPKVVAAVRQQLDQ-FTH--TAYQIV-PYA---SYV-TLAERINALAPIDGPA--KTAFFTTGAEAVENAVKIARAYTG 126 (421)
T ss_pred CCHHHHHHHHHHHhh-ccc--cccccc-CCh---HHH-HHHHHHHHhCCCCCCc--eEEEeCCcHHHHHHHHHHHHHhhC
Confidence 368888888777653 211 110011 122 112 2345677776532101 2456789999999988744 233
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcc-------------eEEEEeccccCCCC---CCCHHHHHHHhhh----cC
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDESTG---LVDYDMLEKTAIL----FR 251 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~i~~~~~~~~~---~iD~d~le~~i~~----~~ 251 (385)
..+|+...-.| ||+... .++..+. .+..++++-. ..+ ..|++.+++.++. .+
T Consensus 127 r~~ii~~~~~y-----HG~t~~--~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (421)
T PRK06777 127 RPGVIAFGGAF-----HGRTLL--TMALTGKVAPYKVGFGPFPGSIFHALYPNE-LHGVSVEEALSSVERLFKADIAPDQ 198 (421)
T ss_pred CCeEEEEcCCc-----CCccHH--HHhhcCCCcccccCCCCCCCCcEEcCCCcc-ccCcCHHHHHHHHHHHHHhccCCCc
Confidence 45677765332 332100 1111110 0111222210 001 1246678877742 23
Q ss_pred CcEEEEcCCC--CCC-CCC---HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccE
Q 016668 252 PKLIIAGASA--YPR-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRG 321 (385)
Q Consensus 252 pklIi~~~s~--~~~-~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~Gprg 321 (385)
...|++.+.. .+. ..+ +++|+++|+++|+++|+|+.|. |+...|... ..++ ..|++ ++.|.+ +|.+.
T Consensus 199 iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~pDiv--~~sK~l~~G~pi 275 (421)
T PRK06777 199 VAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-GFARTGKLFAMEYYDVKPDLI--TMAKSLGGGMPI 275 (421)
T ss_pred eEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCccCCchhhhhhcCCCCCEE--eeehhhcCCCce
Confidence 4567775432 121 223 8999999999999999999985 664444321 1122 35766 578998 56788
Q ss_pred EEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
|++++++ ++.+.+.......+.++ +....++...+|+.+.+++..
T Consensus 276 gav~~~~------~i~~~~~~~~~~~T~~~-~p~~~aaa~a~L~~~~~~~l~ 320 (421)
T PRK06777 276 SAVVGRA------EVMDAPAPGGLGGTYAG-NPLAVAAALAVLDVIAEEKLC 320 (421)
T ss_pred EEEEEcH------HHHhccCCCCCCCCCCc-CHHHHHHHHHHHHHHHhccHH
Confidence 9999887 57666654433344443 444455556677766555543
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-07 Score=93.43 Aligned_cols=145 Identities=18% Similarity=0.150 Sum_probs=81.2
Q ss_pred CCcHHHHHHHHHHh--ccCCCEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCCCCCCCH
Q 016668 175 LSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDESTGLVDY 240 (385)
Q Consensus 175 ~sGs~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~~~~iD~ 240 (385)
+|||+|+..++... .....+|+...-.| ||+-.. .++..+ ..+..+|++.......-|+
T Consensus 110 ~sGseA~e~AlklAr~~tgr~~ii~~~~~y-----HG~t~~--~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 182 (425)
T PRK09264 110 PTGTNAVEAALKLARKVTGRTNIVAFTNGF-----HGMTLG--SLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTL 182 (425)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEECCcc-----CCccHH--HHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHH
Confidence 69999999998754 23345777765332 332100 001100 0123334321100001367
Q ss_pred HHHHHHhhhc-----CCcEEEEcCC--CCCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCc
Q 016668 241 DMLEKTAILF-----RPKLIIAGAS--AYPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCD 306 (385)
Q Consensus 241 d~le~~i~~~-----~pklIi~~~s--~~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaD 306 (385)
+++++.+++. +..+|++.+. ..+. ...+++|+++|++||+++|+|+.|+ |+.-.|.. . ..++ ..|
T Consensus 183 ~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GrtG~~~~~~~~~v~PD 261 (425)
T PRK09264 183 AYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA-GCGRTGTFFSFERAGITPD 261 (425)
T ss_pred HHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh-CCccccHHHHHhhcCCCCC
Confidence 8888888542 2456776542 1222 2258999999999999999999985 54322321 1 1122 457
Q ss_pred EEEECCCccCc--cccEEEEEEeCC
Q 016668 307 VVTTTTHKSLR--GPRGGMIFFKKD 329 (385)
Q Consensus 307 iv~~S~hK~l~--GprgG~I~~~~~ 329 (385)
++++ .|.|. |.+.|+++++++
T Consensus 262 i~t~--~K~l~~~G~pigav~~~~~ 284 (425)
T PRK09264 262 IVTL--SKSISGYGLPMALVLIKPE 284 (425)
T ss_pred EEEe--ccccCCCccceEEEEEchh
Confidence 7766 49984 446688888763
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-06 Score=89.71 Aligned_cols=238 Identities=13% Similarity=0.001 Sum_probs=122.8
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
.+|.|.+++...+..- . +..... ..++ ...+ ..+++.+++.... +...++.+|||+|+.+++... ...
T Consensus 50 ~~p~v~~a~~~ql~~~-~--~~~~~~-~~~~---~~~~-la~~l~~~~p~~~--~~~v~f~~sGseA~e~AlklAr~~tg 119 (420)
T TIGR00700 50 SHPRVVDAVRTQVAEF-T--HTCFMV-TPYE---GYVA-LAEKLNRIAPGSG--PKKSVFFNSGAEAVENAVKIARSYTG 119 (420)
T ss_pred CCHHHHHHHHHHHHhc-c--Cccccc-cCCh---HHHH-HHHHHHHhCCCCC--CCEEEEeCCcHHHHHHHHHHHHHhcC
Confidence 3688888888776532 1 111000 1122 1222 3455667664211 112466789999999988644 233
Q ss_pred CCEEeecCCCCCccccCCccccccccccCc-------------ceEEEEeccccCCC--------CCCCHHHHHHHhh--
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDEST--------GLVDYDMLEKTAI-- 248 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~i~~~~~~~~--------~~iD~d~le~~i~-- 248 (385)
..+|+...-.| ||+-.. .++..+ -.+..++++..... ..-+++.+++.+.
T Consensus 120 r~~ii~~~~~y-----HG~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (420)
T TIGR00700 120 RPGVVAFDHGF-----HGRTNM--TMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVID 192 (420)
T ss_pred CCcEEEECCCc-----CCCcHH--HHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhh
Confidence 45677665332 332100 011111 01122232210000 0012456666653
Q ss_pred --hcCCcEEEEcCC--CCCCC----CCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-
Q 016668 249 --LFRPKLIIAGAS--AYPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL- 316 (385)
Q Consensus 249 --~~~pklIi~~~s--~~~~~----~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l- 316 (385)
..+...||+.+- ..+.. ..+++|+++|+++|+++|.|+.+ .|+...|... ..++ ..|+++ ++|.+
T Consensus 193 ~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~-tg~gr~g~~~a~~~~~~~pDi~~--lsK~l~ 269 (420)
T TIGR00700 193 VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQ-TGFARTGAMFACEHEGPEPDLIT--TAKSLA 269 (420)
T ss_pred cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecc-cCCcccchhHHHhhcCCCCCEEE--eecccc
Confidence 123456777542 12222 22899999999999999999997 5654444211 1122 457665 67998
Q ss_pred ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 317 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 317 ~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
+|++.|++++++ ++.+.+.......+.++. +...++..++++.+.++++.+..++
T Consensus 270 ~G~pig~v~~~~------~i~~~~~~~~~~~T~~~~-pl~~aaa~a~l~~l~~~~~~~~~~~ 324 (420)
T TIGR00700 270 DGLPLSGVTGRA------EIMDAPAPGGLGGTYAGN-PLACAAALAVLAIIESEGLIERARQ 324 (420)
T ss_pred CCcceEEEEecH------HHHhhcCCCCcCCCCCcC-HHHHHHHHHHHHHHHhccHHHHHHH
Confidence 567889999987 576666543333334433 3344444446665555555444433
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-07 Score=92.03 Aligned_cols=237 Identities=18% Similarity=0.122 Sum_probs=125.3
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
-+|.|.+++...+..- ..-... .+ .++ ... ...+++.+++.-...+ ..++.+|||+|+.+++... ...
T Consensus 57 ~~p~v~~ai~~ql~~l-~~~~~~--~~-~~~---~~~-~la~~l~~~~p~~~~~--~v~f~~SGseA~e~AlklAr~~tg 126 (425)
T PRK07495 57 RHPRVIAAVKAQLDRF-THTCHQ--VV-PYE---NYV-RLAERLNALVPGDFAK--KTIFVTTGAEAVENAVKIARAATG 126 (425)
T ss_pred CCHHHHHHHHHHHhhc-cCcccC--cc-CCH---HHH-HHHHHHHHhCCCCCCC--EEEECCchHHHHHHHHHHHHHhhC
Confidence 3678888887766532 110000 01 122 122 2455677777532111 2456789999999988754 233
Q ss_pred CCEEeecCCCCCccccCCccccccccccCc-------------ceEEEEeccccCCCCC---CCHHHHHHHhhh----cC
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDESTGL---VDYDMLEKTAIL----FR 251 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~i~~~~~~~~~~---iD~d~le~~i~~----~~ 251 (385)
..+|+...-.| ||+-.. .....+ ..+..++++.+. .+. -+++++++.++. .+
T Consensus 127 r~~ii~~~~~y-----HG~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~~~~~~~~ 198 (425)
T PRK07495 127 RSAVIAFGGGF-----HGRTFM--GMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFKADVDPQR 198 (425)
T ss_pred CCeEEEECCCc-----CCccHH--HhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHHHHHhccCCCc
Confidence 45777765433 222100 000000 112334443221 111 124555766542 34
Q ss_pred CcEEEEcCCC--CCCC----CCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccE
Q 016668 252 PKLIIAGASA--YPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRG 321 (385)
Q Consensus 252 pklIi~~~s~--~~~~----~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~Gprg 321 (385)
+.+|++.+.. .+.. .-+++|+++|+++|+++|.|++|. |+...|... ..++ ..|+ .++.|.+ .|.+.
T Consensus 199 iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~a~~~~gv~pDi--~tlsK~l~~G~pi 275 (425)
T PRK07495 199 VAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-GFARTGKLFAMEHHEVAADL--TTMAKGLAGGFPL 275 (425)
T ss_pred eEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-cCCcCCCceeecccCCCCCE--EeehhhhcCCccc
Confidence 6677776432 2211 238899999999999999999984 664444321 1111 2455 4557998 45678
Q ss_pred EEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
|++++++ ++.+.+.......+.++ ++...++..++++.+.++++.+..++
T Consensus 276 gav~~~~------~i~~~~~~~~~~~T~~~-~pl~~aaa~a~l~~l~~~~l~~~~~~ 325 (425)
T PRK07495 276 AAVTGRA------EIMDAPGPGGLGGTYGG-NPLGIAAAHAVLDVIEEEDLCERANQ 325 (425)
T ss_pred eEEEEcH------HHHhccCCCCcCCCCCC-CHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 8888887 56666544333333433 33445544557777766666544443
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.7e-07 Score=91.02 Aligned_cols=231 Identities=16% Similarity=0.082 Sum_probs=119.1
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
+|.|.+++...+.. ... ....++ .++ .+..+.+++.+++.....+ ...+++|||+|+.+++... ....
T Consensus 60 ~p~v~~Ai~~ql~~-~~~--~~~~~~-~~~----~~~~lae~L~~~~p~~~~~--~v~f~~SGseA~e~AiklAr~~tgr 129 (445)
T PRK08593 60 PPRVVEAIKAQADK-FIH--YTPAYM-YHE----PLVRLAKKLCELAPGDFEK--RVTFGLSGSDANDGIIKFARAYTGR 129 (445)
T ss_pred CHHHHHHHHHHHHh-ccC--cccccc-CCH----HHHHHHHHHHHhCCCCCCC--EEEECCchHHHHHHHHHHHHHhhCC
Confidence 68888888777643 211 111111 223 2222455677777433100 2345689999999998743 2223
Q ss_pred CEEeecCCCCCccccCCccccccccccCc-------------ceEEEEeccccCC--CCCCC-------HHHHHHHhhh-
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDES--TGLVD-------YDMLEKTAIL- 249 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~i~~~~~~~--~~~iD-------~d~le~~i~~- 249 (385)
.+|+..+-.| ||+... .++..+ ..+..++++-... ....+ ++++++.+..
T Consensus 130 ~~ii~~~~~Y-----HG~t~~--als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (445)
T PRK08593 130 PYIISFTNAY-----HGSTYG--SLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKY 202 (445)
T ss_pred CeEEEECCCc-----CCCcHH--HHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhh
Confidence 5677665332 332100 111111 0122233221000 00111 2445544432
Q ss_pred ---cCCcEEEEcCCC--CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc
Q 016668 250 ---FRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR 317 (385)
Q Consensus 250 ---~~pklIi~~~s~--~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~ 317 (385)
.+..+||+.+.. .+...+ +++|+++|+++|+++|+|++|. |+.-.|... .-+. ..|+++ +.|.+.
T Consensus 203 ~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~t-g~GrtG~~~a~~~~gv~pDi~t--~gK~l~ 279 (445)
T PRK08593 203 LPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQ-GLGRTGKWSSISHFNITPDLMS--FGKSLA 279 (445)
T ss_pred cCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcCchHHHHHhcCCCCCEee--eccccc
Confidence 245677776432 222223 8999999999999999999983 442233211 1122 357664 569985
Q ss_pred -cccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 318 -GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 318 -GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
|.++|++++++ ++.+.++......+. +.++...++...+++.+.+++.
T Consensus 280 ~G~p~gav~~~~------~i~~~~~~~~~~~T~-~~~pl~~aaa~a~l~~l~~~~l 328 (445)
T PRK08593 280 GGMPMSAIVGRK------EIMESLEAPAHLFTT-GANPVSCAAALATIDMIEDESL 328 (445)
T ss_pred CCcccEEEEEcH------HHHhhhccCCCCCCC-CCCHHHHHHHHHHHHHHHhccH
Confidence 56788888887 577766432222233 3444556666667777665554
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.9e-07 Score=92.48 Aligned_cols=220 Identities=17% Similarity=0.131 Sum_probs=118.3
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-cCC-
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-KPH- 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all-~pG- 192 (385)
.|.|.+++.+.+..-.. +. .+. ..+....+++.+++.... ...+.+|||+|+..++.... -.|
T Consensus 66 ~p~v~~Ai~~q~~~~~~--------~~-~~~--~~~~~la~~l~~~~p~~~----~v~f~~sGseA~e~AlklAr~~tgr 130 (431)
T PRK06209 66 YPPVVEAVREALQDGCN--------FT-RPS--AIELDAAESFLELIDGAD----MVKFCKNGSDATSAAVRLARAYTGR 130 (431)
T ss_pred CHHHHHHHHHHHHhCcC--------CC-CCC--HHHHHHHHHHHHhCCccc----eEEEecCHHHHHHHHHHHHHHHhCC
Confidence 67777777766653211 11 111 222224556777764211 13567899999999987442 123
Q ss_pred CEEeecCCCCCcccc-----CCccccccccccCcce----EEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCC
Q 016668 193 DRIMGLDLPHGGHLS-----HGFMTPKRRVSGTSIY----FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASA 261 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s-----~~~~~~~~~~~~~g~~----~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~ 261 (385)
.+|+... ++++.+ |+.. .. ..+.. .....++ .-|++++++.++.. +..+|++.+ .
T Consensus 131 ~~i~~~~--~~~~h~~~~~~~g~~----~~-~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~~~~~~aavi~Ep-v 196 (431)
T PRK06209 131 DLVARCA--DHPFFSTDDWFIGTT----PM-SAGIPASVSALTVTFR------YNDIASLEALFEDHPGRIACVILEP-A 196 (431)
T ss_pred CeEEEec--cCccccccccccccC----CC-CCCCChhHhccccccC------CCCHHHHHHHHHhCCCCEEEEEEcc-c
Confidence 4555431 111110 1110 00 00100 0011111 34889999888542 345666653 3
Q ss_pred CCC---CCCHHHHHHHHHHcCcEEEEeccccccccccCc-ccCCCC-CCcEEEECCCccCcc-ccEEEEEEeCCCCchhH
Q 016668 262 YPR---DFDYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGVE 335 (385)
Q Consensus 262 ~~~---~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p~~-gaDiv~~S~hK~l~G-prgG~I~~~~~~~~~~~ 335 (385)
.+. ...+++|+++|+++|+++|+|++| .|+...+. ....+. ..|+++ +.|.+.| ..+|.+++++ +
T Consensus 197 ~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi~t--~gK~lggG~p~~av~~~~------~ 267 (431)
T PRK06209 197 TADEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGIVPDLSC--FGKALGNGFAVSALAGKR------E 267 (431)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCCCcceee--ehhhhcCCcccEEEEEHH------H
Confidence 332 334899999999999999999999 67643211 111122 357754 5699954 4577788877 4
Q ss_pred HHHH--Hh----hccC-CCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 336 LESA--IN----NAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 336 ~~~~--i~----~~~f-p~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+.+. +. ...| .+..-++++..+++..++++.+.+++.
T Consensus 268 i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~ 311 (431)
T PRK06209 268 YMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDV 311 (431)
T ss_pred HHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCH
Confidence 5554 21 1111 122224556667777778888776654
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.4e-07 Score=91.08 Aligned_cols=233 Identities=15% Similarity=0.108 Sum_probs=121.1
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
-+|.|.+++...+..- .. .. +++ -++ ......+++.+++..+.+ ...++.|||+|+..++....
T Consensus 99 ~~p~v~~Ai~~ql~~l-~~--~~-~~~-~~~----~~~~lae~L~~~~p~~~~---~v~f~~SGsEAve~AlklAr~~t~ 166 (459)
T PRK11522 99 RNPVVVSAVQNQLAKQ-PL--HS-QEL-LDP----LRAMLAKTLAALTPGKLK---YSFFCNSGTESVEAALKLAKAYQS 166 (459)
T ss_pred CCHHHHHHHHHHHhhC-cc--cc-ccc-CCH----HHHHHHHHHHHhCCCCCC---EEEEeCCchHHHHHHHHHHHHHhc
Confidence 3799999998877532 11 11 111 122 222345567777643322 23556799999999987442
Q ss_pred cCC-CEEeecCCCCCccccCCccccccccccCcceEEEEec-cccCCC---CCCCHHHHHHHhhh-----cCCcEEEEcC
Q 016668 190 KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDEST---GLVDYDMLEKTAIL-----FRPKLIIAGA 259 (385)
Q Consensus 190 ~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~-~~~~~~---~~iD~d~le~~i~~-----~~pklIi~~~ 259 (385)
++| .+|+...-. + ||+-.. .+...+......++ +..+.. ...|.+++++.++. .+...|++.+
T Consensus 167 ~~gr~~ii~~~~~---y--HG~t~~--~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEp 239 (459)
T PRK11522 167 PRGKFTFIATSGA---F--HGKSLG--ALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEP 239 (459)
T ss_pred cCCCcEEEEecCC---C--CCCcHH--HhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEec
Confidence 122 357766532 2 443110 11122210000000 000000 12377888887753 1234666654
Q ss_pred C--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccCcc---ccEEEEEEe
Q 016668 260 S--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG---PRGGMIFFK 327 (385)
Q Consensus 260 s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l~G---prgG~I~~~ 327 (385)
. ..+...+ +++++++|+++|+++|+|++| .|+--.|.. - .-++ ..|+++ +.|.|.| |-|++ +++
T Consensus 240 v~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~-tG~GRtG~~~a~e~~gv~PDivt--~gK~lggG~~Pigav-~~~ 315 (459)
T PRK11522 240 IQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQ-TGMGRTGKMFACEHENVQPDILC--LAKALGGGVMPIGAT-IAT 315 (459)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccce-ecCCccchhhhhhccCCCCCEEE--echhhhCCCccceeE-EEc
Confidence 2 2233334 899999999999999999999 465223321 1 1122 358774 4699964 44554 455
Q ss_pred CCCCchhHHHHHHhhc--cCCCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 328 KDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 328 ~~~~~~~~~~~~i~~~--~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
+ ++.+.+... .+..+.++ ++...|+..++|+.+.++++.+..
T Consensus 316 ~------~i~~~~~~~~~~~~~T~~g-np~~~Aaala~L~~i~~~~l~~~~ 359 (459)
T PRK11522 316 E------EVFSVLFDNPFLHTTTFGG-NPLACAAALATINVLLEQNLPAQA 359 (459)
T ss_pred H------HHHHHhccCCcccCCCCCC-CHHHHHHHHHHHHHHhcchHHHHH
Confidence 5 455544322 12222322 445555555678887776654433
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-07 Score=91.98 Aligned_cols=188 Identities=18% Similarity=0.218 Sum_probs=115.0
Q ss_pred CCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHH
Q 016668 165 ENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 243 (385)
Q Consensus 165 ~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~l 243 (385)
+.+| .|..++|. .+++.++..++++||.|++-...+.+-+ ..++..| +.++|++.| ...+|+|.|
T Consensus 122 ~~~w--diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL--------~s~~a~g--v~~ipv~md--~~Gi~pE~l 187 (472)
T KOG0634|consen 122 YKNW--DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSAL--------QSMEALG--VKIIPVKMD--QDGIDPESL 187 (472)
T ss_pred CCCc--eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHH--------HhccccC--ceEEecccc--CCCCCHHHH
Confidence 4567 45556665 5999999999999999999776543322 1234455 467776665 446999999
Q ss_pred HHHhhh--------cCCcEEEEcCC-CCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccC-------------
Q 016668 244 EKTAIL--------FRPKLIIAGAS-AYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAAS------------- 296 (385)
Q Consensus 244 e~~i~~--------~~pklIi~~~s-~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g------------- 296 (385)
++.+.. .+|+++++=++ .|| .... =++|.+||++|+.+++.|+.++. |-...
T Consensus 188 ~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~-Lq~~~y~~~~~~~~p~~s 266 (472)
T KOG0634|consen 188 EEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYF-LQMNTYNPSLELESPAHS 266 (472)
T ss_pred HHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccce-eeccccCCCccccCcccc
Confidence 998753 23677765322 233 2333 36899999999999999998653 21110
Q ss_pred -------cccCCCC-CCc--E-EEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHH
Q 016668 297 -------VVADPFK-YCD--V-VTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCL 364 (385)
Q Consensus 297 -------~~~~p~~-gaD--i-v~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al 364 (385)
..++.+. ..| | -.-||+|-+ +|.|-||+.+++. +.+++-...--.+++ |+...-.-+...|
T Consensus 267 ~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~------~l~ril~~ae~~t~~-pSg~sq~iv~a~l 339 (472)
T KOG0634|consen 267 SSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSL------FLKRILDLAEVATSG-PSGFSQGIVYAML 339 (472)
T ss_pred HHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHH------HHHHHhhhcceeecC-cccccHHHHHHHH
Confidence 1222222 222 3 467999987 7889999999984 444443322222232 4433333334444
Q ss_pred HHhhCchHHH
Q 016668 365 KHAQSPEFKV 374 (385)
Q Consensus 365 ~e~~~~~~~~ 374 (385)
+..-.++|.+
T Consensus 340 ~~wgqeG~~~ 349 (472)
T KOG0634|consen 340 KRWGQEGFLR 349 (472)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-06 Score=86.92 Aligned_cols=240 Identities=17% Similarity=0.088 Sum_probs=125.2
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~-~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
+|.|.+|+...+..-. + ...++......+ ...+++.+++-.+ .+ ...+.+||++||.+++... ...
T Consensus 74 hP~Vv~Av~~q~~~~~-h--~~~~~~~~e~~v-----~~ae~L~~~~p~~~~~---~~~f~~sGaeA~E~AiKiAr~~Tg 142 (447)
T COG0160 74 HPRVVEAVKRQLAKLN-H--THTRDLYYEPYV-----ELAEKLTALAPGSGLK---KVFFGNSGAEAVEAAIKIARAYTG 142 (447)
T ss_pred CHHHHHHHHHHHHHhh-c--ccCCcccchhHH-----HHHHHHHHhCCcccCC---eEEecCCcHHHHHHHHHHHHHHhC
Confidence 7999999887654321 1 111222111212 1344566666553 22 3466789999999998754 233
Q ss_pred CCEEeecCCCCCccccCCcc--cccccccc-----CcceEEEEeccccCCC---------CCCCHHHHHHHhhh-----c
Q 016668 192 HDRIMGLDLPHGGHLSHGFM--TPKRRVSG-----TSIYFESMPYRLDEST---------GLVDYDMLEKTAIL-----F 250 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~--~~~~~~~~-----~g~~~~~i~~~~~~~~---------~~iD~d~le~~i~~-----~ 250 (385)
+..|+...-.+-|. +++.. +..+.... ....+..+||+..... +.-..+.+++.+.. .
T Consensus 143 r~~viaf~~afHG~-T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~ 221 (447)
T COG0160 143 RPGVIAFDGAFHGR-TLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPE 221 (447)
T ss_pred CCcEEEECCccccc-chhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCC
Confidence 45677665433221 11110 00000010 1112345555432111 01123445554422 2
Q ss_pred CCcEEEEcCC--CCCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----CCcEEEECCCccCc-cc
Q 016668 251 RPKLIIAGAS--AYPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLR-GP 319 (385)
Q Consensus 251 ~pklIi~~~s--~~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~----gaDiv~~S~hK~l~-Gp 319 (385)
++..||+.+. .-+. ..-+++++++|++||+++|+|+.| .|+--.|.+ ..++ ..|++|++ |.+. |.
T Consensus 222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQ-tG~GRTG~~-fa~E~~gv~PDivt~a--K~ig~G~ 297 (447)
T COG0160 222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQ-TGFGRTGKM-FAFEHFGVEPDIVTLA--KSLGGGL 297 (447)
T ss_pred ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCccccc-hhhhhcCCCCCEEEec--ccccCCC
Confidence 3556777542 1222 223899999999999999999999 566555533 2333 35888776 9984 45
Q ss_pred cEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 320 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 320 rgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
..|.+++++ ++.+ .....+.++.+|......+| .+.|+.+.++++.+.+++
T Consensus 298 Pl~avv~r~------ei~~-~~~g~~~~Tf~GNpva~Aaa-~AvL~vie~e~L~~~a~~ 348 (447)
T COG0160 298 PLSAVVGRA------EIMD-WPPGGHGGTFGGNPVACAAA-LAVLDVIEEENLLERAAE 348 (447)
T ss_pred ceeEEeccH------Hhcc-cCCcccCCCCCcCHHHHHHH-HHHHHHHHHccHHHHHHH
Confidence 667788887 3444 22223333444443344444 446776766666544443
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-06 Score=87.85 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=120.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
-+|.|.+++.+.+.+ .........+ .++ .+..+.+++.+++..+.+ ...+..|||+|+.+++....
T Consensus 65 ~~p~i~~Ai~~q~~~-~~~~~~~~~~--~~~----~~~~lae~L~~~~p~~~~---~v~f~~SGseAve~AlKlar~~~~ 134 (460)
T PRK06105 65 SEQRLVEAAARQMKK-LPFYHTFSHK--SHG----PVIDLAEKLVAMAPVPMS---KVFFTNSGSEANDTVVKLVWYYNN 134 (460)
T ss_pred CCHHHHHHHHHHHHh-CCCeeccccc--CCH----HHHHHHHHHHHhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHHH
Confidence 378899998887754 2111111111 122 222345677788754332 23556899999999987642
Q ss_pred --c-C-CCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCC---CC-------CCCHHHH
Q 016668 190 --K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES---TG-------LVDYDML 243 (385)
Q Consensus 190 --~-p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~---~~-------~iD~d~l 243 (385)
. + ..+|+...-.| ||+... .++..+. .+..++++.... .+ ...++++
T Consensus 135 ~~g~t~r~~il~~~~~y-----HG~t~~--a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 207 (460)
T PRK06105 135 ALGRPEKKKIISRQRGY-----HGVTIA--SASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANEL 207 (460)
T ss_pred hcCCCCCcEEEEecCcc-----CCcchh--heeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHH
Confidence 1 2 35677765332 332110 1111111 011122210000 00 0124667
Q ss_pred HHHhhh---cCCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEecccc-ccccccCccc--CCCC-CCcEEEE
Q 016668 244 EKTAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHI-SGLVAASVVA--DPFK-YCDVVTT 310 (385)
Q Consensus 244 e~~i~~---~~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~-~Gli~~g~~~--~p~~-gaDiv~~ 310 (385)
++.+.. .++..||+.+. ..+...+ +++++++|+++|+++|+|+.|+ .|.. |... .-++ ..|++++
T Consensus 208 e~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRt--G~~f~~~~~~v~PDi~~~ 285 (460)
T PRK06105 208 EALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRT--GNMFGCETFGIKPDILVM 285 (460)
T ss_pred HHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcC--chhhhHHhcCCCCCeeee
Confidence 777642 23567777643 2233333 8999999999999999999983 4433 2211 1122 3577755
Q ss_pred CCCccCccc--cEEEEEEeCCCCchhHHHHHHhhc-----c--CCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 311 TTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA-----V--FPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 311 S~hK~l~Gp--rgG~I~~~~~~~~~~~~~~~i~~~-----~--fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
.|.|.|- ..|.+++++ ++.+.+... . +..+++ .++-..++...+|+.+.++++.
T Consensus 286 --gK~lggG~~P~~av~~~~------~i~~~~~~~~~~~~~~~h~~T~~-gnpl~~aaa~a~L~~i~~~~l~ 348 (460)
T PRK06105 286 --SKQLSSSYQPLSAVLMNE------KVYDPIADESGKIGTFGHGFTAS-GHPVAAAVALENLAIIEERDLV 348 (460)
T ss_pred --ecccccCcccceEEEEcH------HHHHHHhcccccCcccccCCCCC-CCHHHHHHHHHHHHHHHhccHH
Confidence 5999552 567777776 566655431 1 112233 3334444444578777766653
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-06 Score=87.34 Aligned_cols=227 Identities=14% Similarity=0.105 Sum_probs=118.5
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
.|.|.+++.+.+......+ ..++ .+....+++.+++.- .+ -..+.+|||+|+..++... ....
T Consensus 71 ~p~v~~ai~~q~~~~~~~~-------~~~~----~~~~la~~l~~~~p~-~~---~v~f~~sGseA~e~AlklAr~~tgr 135 (428)
T PRK12389 71 HPHITKAITEAAENGVLYG-------TPTE----LEIEFAKMLKEAIPS-LE---KVRFVNSGTEAVMTTIRVARAYTGR 135 (428)
T ss_pred CHHHHHHHHHHHHhCCccC-------CCCH----HHHHHHHHHHHhCCC-Cc---EEEEeCCHHHHHHHHHHHHHHhhCC
Confidence 6788888877765321101 1122 222244566666641 11 2356789999999998754 2334
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEE--------EEeccccCCC---CCCCHHHHHHHhhhc--CCcEEEEcC
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE--------SMPYRLDEST---GLVDYDMLEKTAILF--RPKLIIAGA 259 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~--------~i~~~~~~~~---~~iD~d~le~~i~~~--~pklIi~~~ 259 (385)
.+|+...-.| ||+... .++..+.... -++-...++. ...|++.+++.++.. ++..|++.+
T Consensus 136 ~~ii~~~~~y-----HG~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EP 208 (428)
T PRK12389 136 TKIIKFAGCY-----HGHSDL--VLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEP 208 (428)
T ss_pred CEEEEECCCc-----CCChHH--HHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeC
Confidence 6777765332 332100 0111110000 0000000000 023789998888642 345667654
Q ss_pred C--CCCCCCC----HHHHHHHHHHcCcEEEEecccccccccc-CcccCCCC-CCcEEEECCCccCcc-ccEEEEEEeCCC
Q 016668 260 S--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAA-SVVADPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDP 330 (385)
Q Consensus 260 s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~-g~~~~p~~-gaDiv~~S~hK~l~G-prgG~I~~~~~~ 330 (385)
. ..+...+ +++|+++|+++|+++|+|+.|. |+... +....-++ ..|+++ +.|.+.| ...|.+++++
T Consensus 209 v~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~t-G~Rt~~~~a~~~~gv~PDivt--~gK~lggG~Pi~av~~~~-- 283 (428)
T PRK12389 209 IVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVIT-AFRFMYGGAQDLLGVEPDLTA--LGKIIGGGLPIGAYGGRK-- 283 (428)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCcchhhHHhCCCCCeee--echhhcCCCceeEEeEHH--
Confidence 2 2233334 8999999999999999999984 44221 10111122 468764 4699854 3345557776
Q ss_pred CchhHHHHHHhh--ccCC-CccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 331 VLGVELESAINN--AVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 331 ~~~~~~~~~i~~--~~fp-~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
++.+.+.. ..+. ++.+ .++...|+..++|+.+.++++.
T Consensus 284 ----~i~~~~~~~~~~~~~~T~~-gnpl~~Aaala~L~~l~~~~l~ 324 (428)
T PRK12389 284 ----DIMEQVAPLGPAYQAGTMA-GNPASMAAGIACLEVLQQEGVY 324 (428)
T ss_pred ----HHHhhhccCCCcccccCCc-cCHHHHHHHHHHHHHHhcccHH
Confidence 56666642 1122 2223 3444455555677777665553
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-06 Score=88.77 Aligned_cols=237 Identities=15% Similarity=0.040 Sum_probs=124.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
-+|.|.+++...+.+ ....... ...++ ......+++.+++....+ ...+..|||+|+.+++....
T Consensus 60 ~~p~i~~Ai~~q~~~-~~~~~~~---~~~~~----~~~~la~~L~~~~p~~~~---~v~f~~SGsEAve~AlklAr~~~~ 128 (428)
T PRK07986 60 NHPQLNAAMKSQIDA-MSHVMFG---GITHP----PAIELCRKLVAMTPQPLE---CVFLADSGSVAVEVAMKMALQYWQ 128 (428)
T ss_pred CCHHHHHHHHHHHhh-cCCcccc---ccCCH----HHHHHHHHHHhhCCCCcC---EEEEeCCcHHHHHHHHHHHHHHHH
Confidence 368888888777643 2111111 00122 122234567777653322 23567889999999887442
Q ss_pred ---cCCCEEeecCCCCCccccCCccccccccccCcc-------------eEEEEeccccCCC---CCCCHHHHHHHhhhc
Q 016668 190 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDEST---GLVDYDMLEKTAILF 250 (385)
Q Consensus 190 ---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~i~~~~~~~~---~~iD~d~le~~i~~~ 250 (385)
....+|+...-.| ||.... .++..+. .+..++++..... ..-|++++++.++..
T Consensus 129 ~~g~~r~kii~~~~~y-----HG~t~~--a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~ 201 (428)
T PRK07986 129 AKGEPRQRFLTLRHGY-----HGDTFG--AMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAH 201 (428)
T ss_pred hcCCCCcEEEEECCCc-----CCCcHh--hhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhC
Confidence 2346788876433 332100 1111110 0111222110000 023667888877532
Q ss_pred --CCcEEEEcCC--CC-CC----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCcc
Q 016668 251 --RPKLIIAGAS--AY-PR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG 318 (385)
Q Consensus 251 --~pklIi~~~s--~~-~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~G 318 (385)
+..+|++.+. .. +. ...+++|+++|+++|+++|+|++| .|+.-.|... .-+. ..|+++ +.|.|.|
T Consensus 202 ~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~g 278 (428)
T PRK07986 202 RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TGFGRTGKLFACEHAGIAPDILC--LGKALTG 278 (428)
T ss_pred CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCCeeeecccCCCCCEEE--echhhhC
Confidence 2346666542 22 22 123899999999999999999999 6653233211 1122 357775 6799843
Q ss_pred c--cEEEEEEeCCCCchhHHHHHHhhcc-----CCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 319 P--RGGMIFFKKDPVLGVELESAINNAV-----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 319 p--rgG~I~~~~~~~~~~~~~~~i~~~~-----fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
- ..|.+++++ ++.+.+.... ...+++ .++...++..++|+.+.++++.+..++
T Consensus 279 G~~p~~av~~~~------~i~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~L~~i~~~~~~~~~~~ 338 (428)
T PRK07986 279 GTMTLSATLTTR------EVAETISNGEAGCFMHGPTFM-GNPLACAVANASLSLLESGDWQQQVAA 338 (428)
T ss_pred CcccCcchhchH------HHHHHhhcCCCCccccCCCCC-cCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 2 445556666 5666664421 122333 345566666667887776666444443
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-06 Score=87.80 Aligned_cols=233 Identities=12% Similarity=0.028 Sum_probs=124.0
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc--
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-- 190 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~-- 190 (385)
.-+|.|.+++...+. +....... .+.. + ... .+.+++.++++-..+ ...++.||++|+..++.....
T Consensus 61 h~~p~v~~ai~~~~~-~~~~~~~~--~~~~-~---~~~-~la~~l~~~~~~~~~---~v~f~~sGseA~e~AlklAr~~~ 129 (427)
T TIGR00508 61 YNHPRLNAAAQKQID-KMSHVMFG--GFTH-K---PAI-ELCQKLVKMTPNALD---CVFLADSGSVAVEVALKMALQYW 129 (427)
T ss_pred CCCHHHHHHHHHHHH-hcCCcccc--ccCC-H---HHH-HHHHHHHhhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence 446888888877654 33211111 0111 1 112 234566777754322 245677999999988875431
Q ss_pred -----C-CCEEeecCCCCCccccCCccccccccccCcc-------------eEEEEeccccCCC---CCCCHHHHHHHhh
Q 016668 191 -----P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDEST---GLVDYDMLEKTAI 248 (385)
Q Consensus 191 -----p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~i~~~~~~~~---~~iD~d~le~~i~ 248 (385)
+ ..+|+..+-.| ||.... .....+. .....+++..... ..-|++++++.+.
T Consensus 130 ~~~~~~~r~~il~~~~~y-----HG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~ 202 (427)
T TIGR00508 130 QAKGEKNRQKFLTIRSGY-----HGDTFG--AMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLME 202 (427)
T ss_pred HhhCCCCccEEEEEcCCc-----CCccHh--hhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHH
Confidence 2 35788776443 222100 0111110 0011121111000 0125677777775
Q ss_pred hc--CCcEEEEcC--CCCC-----CCCCHHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEECCCccC
Q 016668 249 LF--RPKLIIAGA--SAYP-----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSL 316 (385)
Q Consensus 249 ~~--~pklIi~~~--s~~~-----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S~hK~l 316 (385)
.. +...|++.+ +..+ ...++++|+++|+++|+++|+|++| .|+...|.. ..-++ ..|+++ +.|.|
T Consensus 203 ~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l 279 (427)
T TIGR00508 203 LHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TGFGRTGKLFACEHAGVVPDILC--VGKAL 279 (427)
T ss_pred hcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCCccchhhhcCCCCCEEE--echhh
Confidence 32 345677764 2222 2346899999999999999999999 665333432 11122 467776 57998
Q ss_pred ccc--cEEEEEEeCCCCchhHHHHHHhhcc-----CCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 317 RGP--RGGMIFFKKDPVLGVELESAINNAV-----FPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 317 ~Gp--rgG~I~~~~~~~~~~~~~~~i~~~~-----fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
.|- ..+.+++++ ++.+.++... +...++ .++..+++...+++.+.++++.
T Consensus 280 ~gG~~p~~a~~~~~------~~~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~l~~l~~~~~~ 336 (427)
T TIGR00508 280 TGGYMTLSATVTTD------KVAQTISSGEAGCFMHGPTFM-GNPLACAVAEASLAILLEGEWQ 336 (427)
T ss_pred hcCcccceEEEEcH------HHHHHHhcCCCCccccCCCCC-cCHHHHHHHHHHHHHHHhCCHH
Confidence 432 456667766 5777665421 122222 2455566666678777666653
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-06 Score=87.90 Aligned_cols=236 Identities=15% Similarity=0.086 Sum_probs=122.2
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
-+|.|.+++...+.+....+.. .+ -++ .+....+++.+++.....+ ...+++|||+|+.+++... ...
T Consensus 71 ~~p~v~~ai~~q~~~~~~~~~~--~~--~~~----~~~~la~~L~~~~p~~~~~--~v~f~~sGseA~e~AlklAr~~tg 140 (451)
T PRK06918 71 SHPKVKEALHKQVDQYIHTGFN--VM--MYE----PYIELAEKLAALAPGSFDK--KVLFLNSGAEAVENAVKIARKYTK 140 (451)
T ss_pred CCHHHHHHHHHHHHhccCcccc--cc--ccH----HHHHHHHHHHHhCCCCCCC--EEEEcCCcHHHHHHHHHHHHHHhC
Confidence 3788999988777542111110 01 122 2233456677877533211 2356789999999998754 233
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcc-------------eEEEEeccccC--CCCCCC-------HHHHHHHhh-
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDE--STGLVD-------YDMLEKTAI- 248 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~i~~~~~~--~~~~iD-------~d~le~~i~- 248 (385)
..+|+...-.| ||+-.. .++..+. .+..++++... ..+..+ ++.+++.+.
T Consensus 141 r~~ii~~~~~y-----HG~t~~--~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T PRK06918 141 RQGIISFSRGF-----HGRTLM--TMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFIS 213 (451)
T ss_pred CCcEEEECCCc-----Cccchh--hhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHh
Confidence 45677665332 332110 0111110 01222322100 001100 123444331
Q ss_pred ---hcCCcEEEEcCCC--CC----CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----CCcEEEECCCcc
Q 016668 249 ---LFRPKLIIAGASA--YP----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKS 315 (385)
Q Consensus 249 ---~~~pklIi~~~s~--~~----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~----gaDiv~~S~hK~ 315 (385)
..+.-.|++.+.. .+ ....+++|+++|+++|+++|.|+.+ .|+...|... +++ ..|++ |++|.
T Consensus 214 ~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~-tg~gr~g~~~-a~~~~~v~pDi~--t~sK~ 289 (451)
T PRK06918 214 EVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQ-TGFARTGKYF-AIEHFDVVPDLI--TVSKS 289 (451)
T ss_pred hcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cCcCccCcee-hhHhcCCCCCEE--eeehh
Confidence 1234566665421 12 1223899999999999999999997 5654444321 222 25655 67899
Q ss_pred C-ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 316 L-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 316 l-~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
+ +|.+.|++++++ ++.+.+.........++...... +...+++.+.++++.+..+
T Consensus 290 l~~G~pig~v~~~~------~i~~~~~~~~~~~T~~g~~l~~a-aa~a~l~~i~~~~~~~~~~ 345 (451)
T PRK06918 290 LGAGVPISGVIGRK------EIMDESAPGELGGTYAGSPLGCA-AALAVLDIIEKENLNDRAI 345 (451)
T ss_pred hcCCCccEEEEEcH------HHHhccCCCCcCcCCCcCHHHHH-HHHHHHHHHHHCCHHHHHH
Confidence 8 567889999987 57666654333333443333333 3344666665656544443
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.7e-06 Score=86.37 Aligned_cols=233 Identities=19% Similarity=0.131 Sum_probs=119.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
-+|.|.+++.+.+.+ ...... +...++ ...+ ..+++.+++....+ ...+.+|||+|+..++....
T Consensus 66 ~~p~v~~ai~~ql~~-l~~~~~---~~~~~~---~~~~-la~~L~~~~p~~~~---~v~f~~sGseAve~AlklAr~~~~ 134 (445)
T PRK09221 66 GRPEIVEAVARQAAT-LDYAPA---FQMGHP---LAFE-LAERLAELAPGGLD---HVFFTNSGSESVDTALKIALAYHR 134 (445)
T ss_pred CCHHHHHHHHHHHHh-ccCccc---cccCCH---HHHH-HHHHHHHhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHHH
Confidence 478888888877653 221111 111233 1222 44567777743221 23567899999999886442
Q ss_pred --c-C-CCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCCC--C--------CCCHHHH
Q 016668 190 --K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDEST--G--------LVDYDML 243 (385)
Q Consensus 190 --~-p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~~--~--------~iD~d~l 243 (385)
. + ..+|+...-.| ||... ..++..|. .+..++++.+... . .-+.+++
T Consensus 135 ~~g~~~r~~ii~~~~~y-----HG~t~--gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (445)
T PRK09221 135 ARGQGTRTRLIGRERGY-----HGVGF--GGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDL 207 (445)
T ss_pred hcCCCCCcEEEEECCCc-----Cccch--hhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHH
Confidence 1 1 35787766432 33210 00111110 1122232210000 0 0113577
Q ss_pred HHHhhhc---CCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEEC
Q 016668 244 EKTAILF---RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTT 311 (385)
Q Consensus 244 e~~i~~~---~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S 311 (385)
++.++.. +...|++.+. ..+...+ +++|+++|+++|+++|+|++|+ |+.-.|.. ..-++ ..|++++
T Consensus 208 ~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t-G~GRtG~~~~~~~~gv~PDi~~~- 285 (445)
T PRK09221 208 ERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVIT-GFGRLGAAFAAERFGVTPDIITF- 285 (445)
T ss_pred HHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCCcCchhhHHHhcCCCCCEEEe-
Confidence 7777532 3456777642 2234444 8999999999999999999984 54222221 11122 3477755
Q ss_pred CCccCcc--ccEEEEEEeCCCCchhHHHHHHhhc------cC-CCccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 312 THKSLRG--PRGGMIFFKKDPVLGVELESAINNA------VF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 312 ~hK~l~G--prgG~I~~~~~~~~~~~~~~~i~~~------~f-p~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
.|.+.| ...|.+++++ ++.+.+... .+ ..+.++ ++..+++...+|+.+.+++..+
T Consensus 286 -gK~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~~~~T~~~-~pl~~aaa~a~L~~i~~~~l~~ 349 (445)
T PRK09221 286 -AKGLTNGAIPMGAVIASD------EIYDAFMQGPEYAIEFFHGYTYSA-HPVACAAGLATLDIYREEDLFE 349 (445)
T ss_pred -ccccccCcccceeeEEcH------HHHHhhccCcccccccccccCCCc-CHHHHHHHHHHHHHHHhccHHH
Confidence 588853 3456677776 565555321 11 123333 3444555456787776666543
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-06 Score=86.72 Aligned_cols=232 Identities=16% Similarity=0.069 Sum_probs=116.2
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~---- 190 (385)
+|.|.+++...+.. ...... ..+ .++ ....+.+++.+++..+.+ ...+++|||+|+.+++.....
T Consensus 70 ~p~v~~Av~~q~~~-~~~~~~-~~~--~~~----~~~~la~~l~~~~p~~~~---~v~f~~sGseAve~AlklAr~~~~~ 138 (460)
T PRK06541 70 RAELAEAAAKQAGT-LAFFPL-WSY--AHP----PAIELAERLAALAPGDLN---RVFFTTGGSEAVESAWKLAKQYFKL 138 (460)
T ss_pred CHHHHHHHHHHHhh-CcCccc-ccc--CCH----HHHHHHHHHHHhCCCCcC---EEEEcCCcHHHHHHHHHHHHHHHHh
Confidence 68888888777643 211111 011 222 222244567777643322 235678999999998864321
Q ss_pred ----CCCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCC-C-CCCC--------HHHHH
Q 016668 191 ----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES-T-GLVD--------YDMLE 244 (385)
Q Consensus 191 ----pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~-~-~~iD--------~d~le 244 (385)
...+|+...-.| ||.... .++..+. .+..++++.... . ..-| ++.++
T Consensus 139 ~g~~~r~~ii~~~~~y-----HG~t~~--a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (460)
T PRK06541 139 TGKPGKHKVISRAIAY-----HGTTQG--ALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIE 211 (460)
T ss_pred cCCCCccEEEEEcCcc-----cCcchh--hhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHH
Confidence 246787766432 332100 0111110 011222211000 0 0011 36677
Q ss_pred HHhhh---cCCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccc-cccccccCcccCCCC-CCcEEEECCC
Q 016668 245 KTAIL---FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAH-ISGLVAASVVADPFK-YCDVVTTTTH 313 (385)
Q Consensus 245 ~~i~~---~~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah-~~Gli~~g~~~~p~~-gaDiv~~S~h 313 (385)
+.++. .+..+|++.+- ..+...+ +++|+++|+++|+++|+|++| +.|-........-++ ..|+++ +.
T Consensus 212 ~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~g 289 (460)
T PRK06541 212 EAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CA 289 (460)
T ss_pred HHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--ec
Confidence 77753 23445666542 1233334 899999999999999999998 344321110011122 358775 67
Q ss_pred ccCc-cc-cEEEEEEeCCCCchhHHHHHHhhc--cC-CCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 314 KSLR-GP-RGGMIFFKKDPVLGVELESAINNA--VF-PGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 314 K~l~-Gp-rgG~I~~~~~~~~~~~~~~~i~~~--~f-p~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
|.+. |. +.|.+++++ ++.+.+... .+ .+.+-+.++...++...+++.+.++++
T Consensus 290 K~l~~G~~pigav~~~~------~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~ 347 (460)
T PRK06541 290 KGITSGYSPLGAMIASD------RLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGL 347 (460)
T ss_pred ccccCCccceeEEEEcH------HHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 9985 43 456666666 455555432 11 111222344445555556766655554
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-06 Score=86.59 Aligned_cols=232 Identities=12% Similarity=0.050 Sum_probs=121.0
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
-.|.|.+++...+.. .....+ . + .++ ......+++.+++....+ ...+.+|||+|+..++... ...
T Consensus 70 ~~p~v~~Ai~~q~~~-~~~~~~--~-~-~~~----~~~~lae~L~~~~p~~~~---~v~f~~SGsEAve~AlklAr~~tg 137 (451)
T PRK06062 70 QHPKVVAAIQEQAAR-LCTVAP--A-H-AND----ARSEAARLIAERAPGDLS---KVFFTNGGADANEHAVRMARLHTG 137 (451)
T ss_pred CCHHHHHHHHHHHHh-cCCcCC--c-c-CCH----HHHHHHHHHHHhCCCCCC---EEEEcCChHHHHHHHHHHHHHhhC
Confidence 368888888877643 221111 1 1 122 222244567777643221 2356789999999998754 223
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcc-----------eEEEEeccccCC-CC--CCC-------HHHHHHHhhhc
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----------YFESMPYRLDES-TG--LVD-------YDMLEKTAILF 250 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-----------~~~~i~~~~~~~-~~--~iD-------~d~le~~i~~~ 250 (385)
..+|+...-.| ||+... .++..+. .+...+++.... .. .-| ++.++++++..
T Consensus 138 r~~ii~~~~~y-----HG~t~~--als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 210 (451)
T PRK06062 138 RPKVLSAYRSY-----HGGTGS--AINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELE 210 (451)
T ss_pred CceEEEEeCCC-----CCCCHH--HHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhc
Confidence 46777765332 333100 1111110 011111110000 00 012 67788877532
Q ss_pred ---CCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEECCCccCcc
Q 016668 251 ---RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG 318 (385)
Q Consensus 251 ---~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S~hK~l~G 318 (385)
++..|++.+. ..+...+ +++|+++|+++|++||+|++|+ |+.-.|.. ..-+. ..|++++ .|.|.|
T Consensus 211 ~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~t-GfGRtG~~~a~~~~gv~PDi~t~--gK~lgg 287 (451)
T PRK06062 211 GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMA-GFGRTGKWFAIEHFGVVPDLITF--AKGVNS 287 (451)
T ss_pred CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecccc-CCCcCcHHHHHHhcCCCCCeeee--chhhhc
Confidence 3456777642 1233334 8999999999999999999985 54222221 11122 4587754 699965
Q ss_pred --ccEEEEEEeCCCCchhHHHHHHhhccC-C-CccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 319 --PRGGMIFFKKDPVLGVELESAINNAVF-P-GLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 319 --prgG~I~~~~~~~~~~~~~~~i~~~~f-p-~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
...|.+++++ ++.+.+....+ . .++++ ++...|+..++|+.+.++++.+
T Consensus 288 G~~Pigav~~~~------~i~~~~~~~~~~~~~T~~g-npl~~Aaa~a~L~~l~~~~l~~ 340 (451)
T PRK06062 288 GYVPLGGVAISE------AIAATFADRPYPGGLTYSG-HPLACAAAVATINAMEEEGIVE 340 (451)
T ss_pred CCcCcEEEEEcH------HHHHHhccCCCCCCCCCCC-CHHHHHHHHHHHHHHHhcCHHH
Confidence 1344455555 46666543322 2 23333 4556666666887776666543
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-06 Score=86.90 Aligned_cols=238 Identities=16% Similarity=0.035 Sum_probs=122.2
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
-+|.|.+++...+..- ....+...+ .++ .+....+++.+++..+.+ ...+.+|||+|+.+++....
T Consensus 67 ~~p~v~~Av~~q~~~~-~~~~~~~~~--~~~----~~~~lAe~L~~~~p~~~~---~v~f~~sGSEAve~AlKlAr~~~~ 136 (461)
T PRK07482 67 GRTEVAEAIAEQAKEL-AYYHTYVGH--GTE----ASITLSKRIIDRAPAGMS---KVYYGLSGSDANETQIKLVWYYNN 136 (461)
T ss_pred CCHHHHHHHHHHHHhc-Ccccccccc--CCH----HHHHHHHHHHHhCCCCcC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 3788888888776532 111110001 122 222245567777743221 23567899999999887552
Q ss_pred --c-C-CCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCC---CC-------CCCHHHH
Q 016668 190 --K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES---TG-------LVDYDML 243 (385)
Q Consensus 190 --~-p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~---~~-------~iD~d~l 243 (385)
. + ..+|+...-.| ||.-. ...+..+. .+..++++.... .+ .-|++.+
T Consensus 137 ~~g~~~r~~Ii~~~~~Y-----HG~t~--ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 209 (461)
T PRK07482 137 VLGRPEKKKIISRWRGY-----HGSGV--VTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADEL 209 (461)
T ss_pred hcCCCCCceEEEecCcc-----CCccH--hhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHH
Confidence 1 2 35788766433 33210 00111110 011122111000 00 1146778
Q ss_pred HHHhhh---cCCcEEEEcCCC--CCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEEC
Q 016668 244 EKTAIL---FRPKLIIAGASA--YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTT 311 (385)
Q Consensus 244 e~~i~~---~~pklIi~~~s~--~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S 311 (385)
++.+.. .+...||+.+.. .+. ..-+++|+++|+++|+++|.|+.+ .|+--.|.. ..-++ ..|+++++
T Consensus 210 ~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~-tGfGRtG~~~a~~~~gv~PDiv~~g 288 (461)
T PRK07482 210 EELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVV-TGFGRLGSMFGSDHYGIEPDLITVA 288 (461)
T ss_pred HHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcCcchhhHHhcCCCCCEEEEc
Confidence 887742 234567776431 121 223899999999999999999997 454212211 11122 46888864
Q ss_pred CCccCcc--ccEEEEEEeCCCCchhHHHHHHhhc-----c-CC-CccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 312 THKSLRG--PRGGMIFFKKDPVLGVELESAINNA-----V-FP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 312 ~hK~l~G--prgG~I~~~~~~~~~~~~~~~i~~~-----~-fp-~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
|.+.| ...|.+++++ ++.+.+... . .. +++ +.++-..|+..++|+.+.++++.+.+++
T Consensus 289 --Kgl~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~h~~T~-~gnpl~~Aaa~a~L~~~~~~~l~~~~~~ 355 (461)
T PRK07482 289 --KGLTSAYAPLSGSIVGE------KVWDVLEQGSDEHGAIGHGWTY-SGHPICAAAALANLDILERENLVGNAAE 355 (461)
T ss_pred --cccccCccccceeeecH------HHHHHHhcccccCCccccCCCC-CcCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99854 2445566665 465555421 1 11 222 2344556665667887777776555443
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-07 Score=88.19 Aligned_cols=202 Identities=19% Similarity=0.207 Sum_probs=123.2
Q ss_pred ccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHH
Q 016668 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEV 184 (385)
Q Consensus 106 ~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a 184 (385)
+|..+.+++.+.+..| ...|..-. |..|+ |....-+.-+++..++.+.+.=| .+++|. +|..++| |.|+..+
T Consensus 80 ~lLd~~~fp~Dai~RA-~~~L~~~g--Gs~Ga--YS~SqGv~~vR~~VA~~I~rRDG-~p~~p~-dI~LT~GAS~ai~~i 152 (475)
T KOG0258|consen 80 ELLDSPEFPTDAIKRA-KRILNDCG--GSLGA--YSDSQGVPGVRKHVAEFIERRDG-IPADPE-DIFLTTGASPAIRSI 152 (475)
T ss_pred hhcCCCCCCHHHHHHH-HHHHHhcC--Ccccc--cccccCChhHHHHHHHHHHhccC-CCCCHH-HeeecCCCcHHHHHH
Confidence 4445666666665555 33443322 22221 22222233566666777777778 555674 4555655 5688887
Q ss_pred HHHhc-cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhh----cCCcEEEEc
Q 016668 185 YTAIL-KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAIL----FRPKLIIAG 258 (385)
Q Consensus 185 ~~all-~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~----~~pklIi~~ 258 (385)
+.-++ .++|-||++-|.|. .|. ..++..|. ..++|-+|++ +|.+|.++|++.+.+ .+|+++++=
T Consensus 153 l~l~~~~~~~GvliPiPQYP---LYs-----Ati~l~~~--~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvI 222 (475)
T KOG0258|consen 153 LSLLIAGKKTGVLIPIPQYP---LYS-----ATISLLGG--TQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVI 222 (475)
T ss_pred HHHHhcCCCCceEeecCCCc---hhH-----HHHHHhCC--cccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEE
Confidence 77764 68899999988653 222 13445554 3556667766 468999999988754 357765544
Q ss_pred CCCCCC-----CCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC-------C--CCc-E---EEECCCccC---c
Q 016668 259 ASAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------K--YCD-V---VTTTTHKSL---R 317 (385)
Q Consensus 259 ~s~~~~-----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~-------~--gaD-i---v~~S~hK~l---~ 317 (385)
.|.||+ ...+++|.++|.+.|++|+.|+.+---+...+.....| . +.| + .+.|+||.+ .
T Consensus 223 NPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gEC 302 (475)
T KOG0258|consen 223 NPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGEC 302 (475)
T ss_pred CCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeee
Confidence 455553 45799999999999999999997532222222100011 1 333 3 456777887 6
Q ss_pred cccEEEE
Q 016668 318 GPRGGMI 324 (385)
Q Consensus 318 GprgG~I 324 (385)
|.|||.+
T Consensus 303 G~RGGYm 309 (475)
T KOG0258|consen 303 GQRGGYM 309 (475)
T ss_pred cccCCee
Confidence 7899875
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-06 Score=85.46 Aligned_cols=125 Identities=14% Similarity=0.037 Sum_probs=75.3
Q ss_pred HHHHHHhhhcCCcEEEEcCC--C-C----CCCCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEE
Q 016668 241 DMLEKTAILFRPKLIIAGAS--A-Y----PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTT 310 (385)
Q Consensus 241 d~le~~i~~~~pklIi~~~s--~-~----~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~ 310 (385)
+.+++.+. .+...||+.+. . . +....+++|+++|+++|+++|+|++| .|+.-.|... ..++ ..|++
T Consensus 191 ~~~~~~~~-~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDi~-- 266 (422)
T PRK05630 191 RSLELLID-ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA-TGFGRTGELFATLAAGVTPDIM-- 266 (422)
T ss_pred HHHHHHHh-hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecce-eCCCcCchhhHHHhcCCCCCee--
Confidence 34455443 35667777652 1 1 22334899999999999999999998 5653233211 1112 35777
Q ss_pred CCCccCcc--ccEEEEEEeCCCCchhHHHHHHhhc-----cCCCccCCChHHHHHHHHHHHHHhhCchHHHH
Q 016668 311 TTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 375 (385)
Q Consensus 311 S~hK~l~G--prgG~I~~~~~~~~~~~~~~~i~~~-----~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y 375 (385)
++.|.+.| +.+|++++++ ++.+.+... .+.+..-+.++..+++...+|+.+.++++.+.
T Consensus 267 t~gK~l~gG~~p~~av~~~~------~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~ 332 (422)
T PRK05630 267 CVGKALTGGFMSFAATLCTD------KVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQ 332 (422)
T ss_pred eeechhhcCccccceeeccH------HHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 45699954 6788888887 566655421 11121113455666666667887776655433
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.9e-06 Score=85.38 Aligned_cols=237 Identities=15% Similarity=0.095 Sum_probs=117.0
Q ss_pred CcHHHHHHHhhHhhcc-CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC-CCCcceeecCCcHHHHHHHHHHhc--
Q 016668 114 TSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGSPANFEVYTAIL-- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~-y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~-~~~~~~V~~~sGs~A~~~a~~all-- 189 (385)
.+|.|.+++...+... +..+ ..+ .++ .+....+++.++..... ....+.+..+|||+|+..++....
T Consensus 52 ~~p~v~~ai~~ql~~~~~~~~----~~~-~~~----~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~ 122 (412)
T TIGR02407 52 NNPKLKQALIDYLADDGIIHS----LDM-ATE----AKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKV 122 (412)
T ss_pred CCHHHHHHHHHHHhhccceec----ccc-CcH----HHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhh
Confidence 3788888887776531 1111 001 122 22223445666532111 000022223799999999987552
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCCCCCCCHHHHHHHhhh-----cCC
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDESTGLVDYDMLEKTAIL-----FRP 252 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~~~~iD~d~le~~i~~-----~~p 252 (385)
....+|+...-.| ||+-.. .++..+ ..+..+|++-......-|++.+++.+.+ .++
T Consensus 123 tgr~~ii~~~~~y-----HG~t~~--als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 195 (412)
T TIGR02407 123 TGRSNVVSFTNAF-----HGMTLG--SLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLP 195 (412)
T ss_pred cCCCeEEEECCCc-----CCchHH--HHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCce
Confidence 3346788765332 332100 011111 0112223221000001246778887753 234
Q ss_pred cEEEEcCCC--CCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccCc--cccE
Q 016668 253 KLIIAGASA--YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR--GPRG 321 (385)
Q Consensus 253 klIi~~~s~--~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l~--Gprg 321 (385)
..|++.+.. .+. ..-+++|+++|+++|+++|.|+.+. |+.-.|.. . .... ..|++++| |++. |.+.
T Consensus 196 aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GRtG~~~a~~~~~v~PDi~~~~--K~lg~~G~pi 272 (412)
T TIGR02407 196 AAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA-GCGRTGTFFSFEPAGIEPDIVCLS--KSISGYGLPL 272 (412)
T ss_pred EEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhHHhcccCCCCCEEEec--hhccCCccce
Confidence 667775421 222 2238999999999999999999984 54222221 1 1122 45877654 9984 5567
Q ss_pred EEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH-hhCchHHHHHH
Q 016668 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH-AQSPEFKVYQN 377 (385)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e-~~~~~~~~y~~ 377 (385)
|+++++++ + +.+......... +.++...++..++++. +.++++.+..+
T Consensus 273 gav~~~~~------~-~~~~~~~~~~T~-~gnpl~~aaa~a~l~~~i~~~~l~~~~~ 321 (412)
T TIGR02407 273 ALTLIKPE------L-DVWKPGEHNGTF-RGNNLAFVTATAALEYYWSDDAFEKAVQ 321 (412)
T ss_pred eEEEEchh------h-hccCCCccCCCC-CccHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 88888773 3 333222222222 2334444444446664 44444544333
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-05 Score=81.63 Aligned_cols=227 Identities=17% Similarity=0.084 Sum_probs=115.5
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
.|.|.+++...+.+. ...... .+ .++ .+....+++.+++.....+ ...+++|||+|+.+++... ....
T Consensus 72 ~p~v~~Ai~~ql~~~-~~~~~~-~~--~~~----~~~~lAe~L~~~~p~~~~~--~v~f~~SGsEA~e~AlklAr~~tgr 141 (441)
T PRK05769 72 HPKVVKAVKEQAEKF-LHYSLT-DF--YYE----PAVELAERLVEIAPGGFEK--KVFFTNSGTESNEAAIKIARYHTGR 141 (441)
T ss_pred CHHHHHHHHHHHHhc-cCccCc-cc--CCH----HHHHHHHHHHHhCCCCCCC--EEEECCchHHHHHHHHHHHHHHhCC
Confidence 688888888776532 111110 11 122 2333456677777522101 2356789999999988644 2234
Q ss_pred CEEeecCCCCCccccCCccccccccccCc-------------ceEEEEeccccC------CCC----CCCHHHHHH-Hhh
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDE------STG----LVDYDMLEK-TAI 248 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~i~~~~~~------~~~----~iD~d~le~-~i~ 248 (385)
++|+...-.| ||+... .++..+ ..+..++++... ++. .-+.+.+++ +++
T Consensus 142 ~~Ii~~~~~y-----HG~t~~--~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 214 (441)
T PRK05769 142 KYIIAFLGAF-----HGRTYG--SLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFK 214 (441)
T ss_pred CeEEEECCCc-----CCccHH--HHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHh
Confidence 6787765332 332100 011110 012222321100 000 012344665 222
Q ss_pred ----hcCCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCcc
Q 016668 249 ----LFRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKS 315 (385)
Q Consensus 249 ----~~~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~ 315 (385)
..+..+|++.+. ..+...+ +++|.++|+++|+++|+|++|. |+.-.|... ..+. ..|++++ .|.
T Consensus 215 ~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t-G~gr~G~~~a~~~~gv~pDivt~--~K~ 291 (441)
T PRK05769 215 KLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT-GMGRTGKMFAIEHFGVEPDIITL--AKA 291 (441)
T ss_pred hccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccceehhhccCCCCCEEEE--ccc
Confidence 123556777542 2234445 9999999999999999999985 553334221 1122 3588764 598
Q ss_pred Cc-cccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhC
Q 016668 316 LR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 316 l~-GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~ 369 (385)
+. |.+.|+++++++ +.+.+.. ....+.++ ++...++...+|+.+.+
T Consensus 292 l~~G~p~gav~~~~~------i~~~~~~-~~~~T~~g-~p~~~aaa~a~L~~l~~ 338 (441)
T PRK05769 292 IAGGLPLGAVIGRAE------LMFLPPG-SHANTFGG-NPVAAAAALATLEELEE 338 (441)
T ss_pred ccCCcccEEEEEehh------hhhcCCC-CCCCCCCc-CHHHHHHHHHHHHHHHH
Confidence 84 456788888873 4433221 22223333 33444444556766654
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=87.30 Aligned_cols=282 Identities=14% Similarity=0.178 Sum_probs=156.9
Q ss_pred hcccCC-hHHHHHHHHHHHHhhh-ccccccCCCC-CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 82 SLGEAD-PEVCEIITKEKERQFK-SLELIASENF-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 82 ~l~~~d-p~~~~~i~~e~~~~~~-~l~Liasen~-~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
+-+.++ .++++++++|..---. .+.+...-++ .++...+.....+ ++++.-.+. .+++ ..++|.+|...++
T Consensus 57 P~~gl~~d~v~~~i~~~~~ld~~~~~~~vS~~v~~~~~~~~~l~~~~~-~k~N~l~~d--~fp~---~~~~e~~~Vnm~~ 130 (491)
T KOG1383|consen 57 PSKGLPKDAVLELINDELMLDGNPRLGLASGVVYWGEPELDKLIMEAY-NKFNPLHPD--EFPV---VRKLEAECVNMIA 130 (491)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcccCeeeEEEecCCcchhhHHHHHH-hhcCccCcc--ccch---hHHHHHHHHHHHH
Confidence 345566 5788888887543221 1222211111 1333333333222 232111111 2333 3489999999999
Q ss_pred HHcCCCCCCCcceeecCCcHHHHHHHHHHh---ccC--C---CEEeecCCCCCccccCCccccccccccCcceEEEEecc
Q 016668 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAI---LKP--H---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~sGs~A~~~a~~al---l~p--G---D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~ 230 (385)
.+|+.+.+..| .-+++||++..++.... .+. | -.|+++.. .|.+.- +.....+.+++-++
T Consensus 131 ~L~~~~~~~~g--~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~---v~~a~e-----K~a~yf~v~l~~V~-- 198 (491)
T KOG1383|consen 131 NLFNAPSDSCG--CGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQN---VHAAFE-----KAARYFEVELREVP-- 198 (491)
T ss_pred HHhcCCccccC--ccccccchHHHHHHHHHHHHHHhccCCCCccccchHH---HHHHHH-----HHHhhEEEEEEeee--
Confidence 99999876443 34667788855554332 111 1 12222221 221100 22334455455555
Q ss_pred ccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CCCCCHHHHHHHHHH-cCcEEEEecccccccccc-Ccc-cCCCC--
Q 016668 231 LDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADA-VGALLMMDMAHISGLVAA-SVV-ADPFK-- 303 (385)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~~~~dl~~I~~ia~~-~ga~livD~ah~~Gli~~-g~~-~~p~~-- 303 (385)
+++.+..+|+.++.+.+.+ ++.+++...+++ +...|+++|.++.-+ +++.+++|++- -|++.. +.. ..+++
T Consensus 199 ~~~~~~~~D~~k~~~~i~e-Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~-GgFi~p~~~~~~~~fdFr 276 (491)
T KOG1383|consen 199 LDEGDYRVDPGKVVRMIDE-NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACL-GGFINPAGYLNEEEFDFR 276 (491)
T ss_pred ccccceEecHHHHHHHhcc-ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccC-ccccccccccCccccccC
Confidence 6666789999999999976 677777665654 467789999999999 99999999985 455542 322 12333
Q ss_pred --CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHhh--c--cCCCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 304 --YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN--A--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 304 --gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~~--~--~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
+.--...++||.-..|.| ++++.+.+....+++.-.++. + .-|++-|+-.-.++++.=+++-.+-.++|++-.
T Consensus 277 ~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~ 356 (491)
T KOG1383|consen 277 VPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENT 356 (491)
T ss_pred CCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHH
Confidence 444578999997455776 777777652111111111111 0 112222322234444444466566677888888
Q ss_pred HHHhccc
Q 016668 377 NKSACKP 383 (385)
Q Consensus 377 ~~v~~~~ 383 (385)
++++++.
T Consensus 357 ~~ive~~ 363 (491)
T KOG1383|consen 357 QNIVETA 363 (491)
T ss_pred HHHHHHH
Confidence 8888764
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-05 Score=82.92 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 267 dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
-+++|+++|+++|+++|.|+.+ .|+.-.|... ..+. ..|+++ +.|.+ .|.+.|++++++ ++ +.+..
T Consensus 228 yl~~lr~lc~~~g~llI~DEV~-tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~G~Pigav~~~~------~~-~~~~~ 297 (442)
T TIGR00709 228 WLQKIREVTRKHDIKLILDEVQ-AGFGRSGTMFAFEHAGIEPDFVV--MSKAVGGGLPLAVLLIAP------EF-DAWQP 297 (442)
T ss_pred HHHHHHHHHHHcCCEEEEeccc-cCCCCCCchhHHHHcCCCCcEEE--EcccccCCcccEEEEEch------HH-hccCC
Confidence 3899999999999999999997 4553334321 1122 458888 56998 456678888876 32 32222
Q ss_pred ccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 343 AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 343 ~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
.....+.+ .++...++...+|+.+.++++.+..+
T Consensus 298 ~~~~~T~~-gnpla~aaa~a~L~~i~~~~l~~~~~ 331 (442)
T TIGR00709 298 AGHTGTFR-GNQLAMVTGTEALNYWKDDNLAQNAQ 331 (442)
T ss_pred CcCCCCCC-cCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 22222333 44445555566777776666654444
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.9e-06 Score=84.34 Aligned_cols=236 Identities=16% Similarity=0.075 Sum_probs=123.3
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc---
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--- 189 (385)
.-+|.|.+++...+.+ ...+.. ....++ .+....+++.+++....+ ...+.+|||+|+..++....
T Consensus 72 h~~p~v~~Ai~~ql~~-l~~~~~---~~~~~~----~~~~lae~L~~~~p~~~~---~v~f~~SGseAve~AlklAr~~~ 140 (460)
T PRK06916 72 HQVPELDEAIREQLNK-IAHSTL---LGLANV----PSILLAEKLIEVVPEGLK---KVFYSDSGATAVEIAIKMAFQYW 140 (460)
T ss_pred CCCHHHHHHHHHHHHh-CCCccc---cccCCH----HHHHHHHHHHHhCCCCCC---EEEEeCCcHHHHHHHHHHHHHHH
Confidence 4478899998877754 221111 111223 222345567777753322 24667899999999887542
Q ss_pred ----cC-CCEEeecCCCCCccccCCccccccccccCcc------------eEEEEecccc---CCCC------CCCHHHH
Q 016668 190 ----KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLD---ESTG------LVDYDML 243 (385)
Q Consensus 190 ----~p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~---~~~~------~iD~d~l 243 (385)
.+ ..+|+...-.| ||.... .++..+. .+..++++.. +..+ .-|++++
T Consensus 141 ~~~g~tgr~~ii~~~~~Y-----HG~t~~--als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l 213 (460)
T PRK06916 141 QNKGKPKKQRFVTLKNAY-----HGDTIG--AVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEEL 213 (460)
T ss_pred HhcCCCCCcEEEEECCcC-----CcccHH--hHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHH
Confidence 23 35787776433 332100 1111110 0122222200 0000 1235667
Q ss_pred HHHhhh--cCCcEEEEcC-C-C-CCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEEC
Q 016668 244 EKTAIL--FRPKLIIAGA-S-A-YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTT 311 (385)
Q Consensus 244 e~~i~~--~~pklIi~~~-s-~-~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S 311 (385)
++.++. .+...|++.+ . . .+. ..-+++++++|+++|+++|.|+.+ .|+--.|... .-+. ..|+++.
T Consensus 214 ~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~-TG~GRtG~~~a~~~~gv~PDiv~~- 291 (460)
T PRK06916 214 EELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVA-TGFGRTGKMFACEHENVTPDIMTA- 291 (460)
T ss_pred HHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechh-hCCCcCchhhHHHhcCCCCCeeee-
Confidence 777753 2345677765 1 1 222 122899999999999999999998 5542233211 1122 4688765
Q ss_pred CCccCc-c-ccEEEEEEeCCCCchhHHHHHHhh------ccCC-CccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 312 THKSLR-G-PRGGMIFFKKDPVLGVELESAINN------AVFP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 312 ~hK~l~-G-prgG~I~~~~~~~~~~~~~~~i~~------~~fp-~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
.|.|. | ...|.+++++ ++.+.+.. ..+. .++++ ++...++...+|+.+.++++.+..
T Consensus 292 -gK~l~gG~~Pi~av~~~~------ei~~~~~~~~~~~~~~~~~~T~~g-npl~~aaa~a~l~~l~~~~l~~~~ 357 (460)
T PRK06916 292 -GKGLTGGYLPIAITVTTD------EIYNAFYGDYEEQKTFFHGHSYTG-NPLGCAVALANLELYEKTNLIEQV 357 (460)
T ss_pred -ehhhhcCccccceeeecH------HHHHHhhccccccCccccCCCCCC-CHHHHHHHHHHHHHHHhccHHHHH
Confidence 59884 4 2456667766 56555532 1222 23333 444455555577766666654433
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-05 Score=87.31 Aligned_cols=233 Identities=13% Similarity=0.038 Sum_probs=117.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
-+|.|.+++...+.. .. ...++ .++.. ....+++++++.-..+ ...+++|||+||.+++... ...
T Consensus 600 ~hp~v~~Ai~~q~~~-l~---~~~~~--~~~~~----~elae~L~~~~p~~~~---~v~f~~SGsEA~e~AlklAr~~tg 666 (972)
T PRK06149 600 GHPRLAAAAARQWSL-LN---TNSRF--HYAAV----AEFSERLAALAPDGLD---TVFLVNSGSEANDLAIRLAWAASG 666 (972)
T ss_pred CCHHHHHHHHHHHHh-cc---ccccc--cCHHH----HHHHHHHHHhCCCCcC---EEEEeCCchHHHHHHHHHHHHhcC
Confidence 379999998877653 21 11222 22322 2234567777732111 2466789999999998732 223
Q ss_pred CCEEeecCCCCCccccCCcccccccc--------ccC-c--ceEEEEecccc-CCCC-CCC-----HHHHHHHhhh----
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRV--------SGT-S--IYFESMPYRLD-ESTG-LVD-----YDMLEKTAIL---- 249 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~--------~~~-g--~~~~~i~~~~~-~~~~-~iD-----~d~le~~i~~---- 249 (385)
..+|+..+-.| ||+-.....+ ... . ..+..++++-. .... ..| .+++++.++.
T Consensus 667 r~~ii~~~~~y-----HG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 741 (972)
T PRK06149 667 RRDVVSVLEAY-----HGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDAS 741 (972)
T ss_pred CCeEEEEeCCC-----CCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhc
Confidence 45666665332 3221000000 000 0 01122221100 0000 112 2444443321
Q ss_pred -cCCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---C-CCcEEEECCCccCc-
Q 016668 250 -FRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLR- 317 (385)
Q Consensus 250 -~~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~-gaDiv~~S~hK~l~- 317 (385)
.++..||+.+. ..|...+ +++++++|+++|+++|+|+.| .|+.-.|.....+ . ..|++++ .|.+.
T Consensus 742 ~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~-tGfGRtG~~~~a~e~~gv~PDivt~--gK~lg~ 818 (972)
T PRK06149 742 GRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQ-VGYGRLGHYFWGFEQQGVVPDIITM--AKGMGN 818 (972)
T ss_pred CCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeeh-hcCCccCccchhhhhcCCCCCEEEe--cccccC
Confidence 23456776542 2233334 899999999999999999998 3432223211111 2 4688854 69985
Q ss_pred cccEEEEEEeCCCCchhHHHHHHhh-ccCCCccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 318 GPRGGMIFFKKDPVLGVELESAINN-AVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 318 GprgG~I~~~~~~~~~~~~~~~i~~-~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
|...|++++++ ++.+.+.. ..+...+++ ++...++-.++|+.+.++++.+
T Consensus 819 G~Pl~av~~~~------~i~~~~~~~~~~~sT~~g-nP~~~aaala~L~~i~~e~l~~ 869 (972)
T PRK06149 819 GHPLGAVITRR------EIAEALEAEGYFFSSTGG-SPVSCRIGMAVLDVLREEKLQE 869 (972)
T ss_pred CeeeEEEEEcH------HHHhhhccCCcccCCCCC-CHHHHHHHHHHHHHHHhcCHHH
Confidence 44557778877 56666653 223233333 4444444455677776665543
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-05 Score=81.63 Aligned_cols=235 Identities=13% Similarity=0.012 Sum_probs=117.7
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~---- 190 (385)
.|.|.+++...+.. ....... +...++ .+....+++.+++....+ -..+.+|||+|+.+++.....
T Consensus 68 ~p~v~~Ai~~q~~~-~~~~~~~--~~~~~~----~~~~lae~L~~~~p~~~~---~v~f~~SGseA~e~AlklAr~~~~~ 137 (456)
T PRK07480 68 RKELADAAARQMRE-LPYYNTF--FKTTHP----PAIELAAKLAEVAPPGFN---HVFFTNSGSEANDTVLRMVRHYWAL 137 (456)
T ss_pred CHHHHHHHHHHHHh-cCCcccc--cccCCH----HHHHHHHHHHHhCCCCcC---EEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 68888888777653 2110000 001122 222245567777753321 235678999999998865421
Q ss_pred ---C-CCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCC---CC-CCC-----HHHHHH
Q 016668 191 ---P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES---TG-LVD-----YDMLEK 245 (385)
Q Consensus 191 ---p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~---~~-~iD-----~d~le~ 245 (385)
+ ..+|+...-.| ||.... .++..|. .+..++++.... +. ..+ .+.+++
T Consensus 138 ~g~~~r~~ii~~~~~y-----HG~tl~--a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 210 (456)
T PRK07480 138 KGKPQKKVIISRKNGY-----HGSTVA--GASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEA 210 (456)
T ss_pred cCCCCCcEEEEECCCc-----CCcchh--hhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHH
Confidence 3 34677765332 332100 1111110 011112110000 00 001 256665
Q ss_pred Hhhh---cCCcEEEEcCCC--CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCC
Q 016668 246 TAIL---FRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTH 313 (385)
Q Consensus 246 ~i~~---~~pklIi~~~s~--~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~h 313 (385)
.+.. .+...||+.+.. .+...+ +++|+++|+++|+++|+|+.+ .|+--.|... .-++ ..|++++ .
T Consensus 211 ~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~-tGfGRtG~~~a~~~~gv~PDiv~~--g 287 (456)
T PRK07480 211 KILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVI-CGFGRTGEWFGSQHFGIKPDLMTI--A 287 (456)
T ss_pred HHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCcCcchhhhhhcCCCCCeeee--e
Confidence 5532 234567775421 222222 899999999999999999998 3442223211 1122 3577765 5
Q ss_pred ccCccc--cEEEEEEeCCCCchhHHHHHHh--hccC--CCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 314 KSLRGP--RGGMIFFKKDPVLGVELESAIN--NAVF--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 314 K~l~Gp--rgG~I~~~~~~~~~~~~~~~i~--~~~f--p~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
|.+.|- ..|.+++++ ++.+.+. ...+ ..+++ .++...|+...+|+.+.++++.+..
T Consensus 288 K~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~T~~-gnpl~~Aaa~a~L~~l~~~~l~~~~ 349 (456)
T PRK07480 288 KGLTSGYIPMGAVGVGD------RVAEVLIEEGGEFNHGFTYS-GHPVAAAVALANLRILRDEGIVERV 349 (456)
T ss_pred hhhccCCccceEEEEcH------HHHHHHhcCCCCcccCCCCC-cCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 998651 345555565 5666552 2211 22333 3455666666688877776654433
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-05 Score=82.66 Aligned_cols=236 Identities=13% Similarity=0.032 Sum_probs=123.2
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
-.|.|.+++...+.+ ....... .+ -++ .+....+++.+++....+ ...++.|||+|+.+++.....
T Consensus 61 ~~p~v~~ai~~q~~~-~~~~~~~--~~-~~~----~~~~lae~L~~~~p~~~~---~v~f~~sGseAve~AlklAr~~~~ 129 (429)
T PRK06173 61 NHPRLNAAATNQLAK-MSHIMFG--GF-THE----PAVELAQKLLEILPPSLN---KIFFADSGSVAVEVAMKMALQYQQ 129 (429)
T ss_pred CCHHHHHHHHHHHHh-cCCcccc--cc-CCH----HHHHHHHHHHhhCCCCcC---EEEEeCCchHHHHHHHHHHHHHHH
Confidence 368888888877643 2111110 01 122 222244566676642221 235678999999998865421
Q ss_pred ----C-CCEEeecCCCCCccccCCccccccccccCcc-------------eEEEEeccccCC--C-CCCCHHHHHHHhhh
Q 016668 191 ----P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDES--T-GLVDYDMLEKTAIL 249 (385)
Q Consensus 191 ----p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~i~~~~~~~--~-~~iD~d~le~~i~~ 249 (385)
+ ..+|+...-.| ||.-. ..++..+. .+..++++.... . ..-+++.+++.++.
T Consensus 130 ~~g~~~r~~ii~~~~~y-----HG~t~--~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~ 202 (429)
T PRK06173 130 AKGEVQRTKFATIRSGY-----HGDTW--HAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQ 202 (429)
T ss_pred HhCCCCCcEEEEECCCc-----CCcch--hhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHh
Confidence 3 35687776433 33100 01111110 011222221100 0 01146667777753
Q ss_pred c--CCcEEEEcCC--CC-C----CCCCHHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEECCCccCc
Q 016668 250 F--RPKLIIAGAS--AY-P----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLR 317 (385)
Q Consensus 250 ~--~pklIi~~~s--~~-~----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S~hK~l~ 317 (385)
. +...|++.+. .. + ...-+++++++|+++|+++|+|++| .|+.-.|.. ..-++ ..|+++ +.|.|.
T Consensus 203 ~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~ 279 (429)
T PRK06173 203 KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IGKALT 279 (429)
T ss_pred CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCCEEE--eehhhh
Confidence 2 3456777652 22 2 2223899999999999999999999 775323322 11122 457877 679984
Q ss_pred -c-ccEEEEEEeCCCCchhHHHHHHhhc-----cCCCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 318 -G-PRGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 318 -G-prgG~I~~~~~~~~~~~~~~~i~~~-----~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
| ...+.++.++ ++.+.+... .+..+++ .++..+++...+|+.+.++++.+..+
T Consensus 280 gG~~p~~a~~~~~------~i~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~l~~i~~~~~~~~~~ 339 (429)
T PRK06173 280 GGYLTLSATITTE------AIAQTICSGEAKCFMHGPTFM-ANPLACAIAAESIRLLLESPWQQNIQ 339 (429)
T ss_pred CCccccceEEecH------HHHHHHhcCCCCccccCCCCC-cCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3 2456666666 465655321 1122233 34566666666888777666544433
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-05 Score=80.73 Aligned_cols=232 Identities=10% Similarity=0.026 Sum_probs=122.4
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
.+|.|.+++...+.+ ....... .+ .++ ......+++.++++.... ...+.+|||+|+..++....
T Consensus 71 ~~p~v~~Ai~~ql~~-~~~~~~~-~~--~~~----~~~~lAe~L~~~~p~~~~---~v~f~~sGseAve~AlKlA~~~~~ 139 (453)
T PRK06943 71 ANPRINAALKDQLDT-LEHAMLA-GC--THE----PAIELAERLAALTGGTLG---HAFFASDGASAVEIALKMSFHAWR 139 (453)
T ss_pred CCHHHHHHHHHHHHh-cCCcccc-cc--CCH----HHHHHHHHHHHhCCCCCC---EEEEeCCCHHHHHHHHHHHHHHHH
Confidence 478888888877653 2111110 01 122 222245567777764321 23556789999999887542
Q ss_pred ---c-CCCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCCC--C-------CCCHHHHH
Q 016668 190 ---K-PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDEST--G-------LVDYDMLE 244 (385)
Q Consensus 190 ---~-pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~~--~-------~iD~d~le 244 (385)
. ...+|+...-.| ||.... .++..|. .+..++++..... . .-|+++++
T Consensus 140 ~rg~~~r~~Ii~~~~~y-----HG~t~g--als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~ 212 (453)
T PRK06943 140 NRGRGDKREFVCLANGY-----HGETIG--ALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVR 212 (453)
T ss_pred HhCCCCCCEEEEECCCc-----CCCcHH--hhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHH
Confidence 1 236788776433 332100 1111110 1122332211000 0 11357777
Q ss_pred HHhhh--cCCcEEEEcCC--C-CCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECC
Q 016668 245 KTAIL--FRPKLIIAGAS--A-YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTT 312 (385)
Q Consensus 245 ~~i~~--~~pklIi~~~s--~-~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~ 312 (385)
+.++. .+...|++.+. . .+. ..-+++++++|++||+++|.|+.+ .|+--.|... .-+. ..|+++++
T Consensus 213 ~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~-TG~GRtG~~fa~~~~gv~PDivt~g- 290 (453)
T PRK06943 213 RLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIA-VGCGRTGTFFACEQAGVWPDFLCLS- 290 (453)
T ss_pred HHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechh-hCCCCCcchhHHHhCCCCCCeEeee-
Confidence 77753 23456777652 1 222 223899999999999999999997 4542223211 1122 46888875
Q ss_pred CccCc-c-ccEEEEEEeCCCCchhHHHHHHhhc-----cCCC-ccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 313 HKSLR-G-PRGGMIFFKKDPVLGVELESAINNA-----VFPG-LQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 313 hK~l~-G-prgG~I~~~~~~~~~~~~~~~i~~~-----~fp~-~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
|.+. | ...|.+++++ ++.+.+... .+.+ +++ .++...++...+|+.+.++++-
T Consensus 291 -Kgl~gG~~Pi~av~~~~------ei~~~~~~~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~i~~~~l~ 351 (453)
T PRK06943 291 -KGISGGYLPLSLVLSRD------AIFAAFYDDDVTRGFLHSHSYT-GNPLACRAALATLDLFAEDDVL 351 (453)
T ss_pred -hhhccCcccceEEEEcH------HHHHhhcccCccCCccCCCCCC-CCHHHHHHHHHHHHHHHhcCHH
Confidence 9884 4 2466677776 566655421 1122 222 3444555556677777766653
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.1e-07 Score=89.56 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHh---ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEe
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~al---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~ 228 (385)
.+..++++.|.+. +|.....| +.+-.++.++. -+.+++|+++...|+.+.. +.. ..+...| ++++.
T Consensus 115 ~Qs~i~eLTGmdv----aNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~---v~~-t~a~~~g--~~iv~ 184 (429)
T PF02347_consen 115 YQSMICELTGMDV----ANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRA---VLR-TYAAPLG--IEIVE 184 (429)
T ss_dssp HHHHHHHHHTSSE----E-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHH---HHH-HHCCHCC--EEEEE
T ss_pred HHHHHHHhhCCCc----cCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHH---HHH-HhhhhCC--eEEEE
Confidence 5778999999986 34444443 33334444443 2334699998865544332 000 0122334 45555
Q ss_pred ccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCc
Q 016668 229 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD 306 (385)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaD 306 (385)
.+.+ +++..| ..++..|++.+|+ +|...|+++|.+++|++|+++++ .+.- .+-+....|-+ |+|
T Consensus 185 ~~~~-~~~~~d---------~~~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~ad~---~aL~~l~~Pge~GAD 250 (429)
T PF02347_consen 185 VPLD-EDGTTD---------DDDTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GADP---NALGGLKSPGEYGAD 250 (429)
T ss_dssp E-BB-TTCSB----------STTEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CGGC---CGCCTC--GGGGT-S
T ss_pred eccc-ccCCcc---------ccCeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ecCH---HHHhCcCChhhcCcc
Confidence 4454 345555 2356677776665 57778899999999999999987 5542 22233456667 999
Q ss_pred EEEECCCccC------ccccEEEEEEeCC
Q 016668 307 VVTTTTHKSL------RGPRGGMIFFKKD 329 (385)
Q Consensus 307 iv~~S~hK~l------~GprgG~I~~~~~ 329 (385)
|++++ ||+| +||..|++.++++
T Consensus 251 I~vg~-~Q~fg~p~~~GGP~~G~~a~~~~ 278 (429)
T PF02347_consen 251 IVVGE-HQTFGIPMGFGGPGAGFFAVRED 278 (429)
T ss_dssp EEEEC-CTTTT---CCC-S--EEEEE-GG
T ss_pred EEeeC-CCCCcccCCCCCCCeeeEEEhhh
Confidence 99776 8886 5677799999886
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-05 Score=81.20 Aligned_cols=236 Identities=15% Similarity=0.072 Sum_probs=121.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
.+|.|.+++...+.. .... ..++ .++ .+....+++.++++...+ ...+++||++|+.+++... ...
T Consensus 88 ~~p~v~~Ai~~ql~~-~~~~--~~~~--~~~----~~~~lae~L~~~~p~~~~---~v~f~~sGseAve~AlklAr~~tg 155 (459)
T PRK06082 88 GHPHVIEKVKEQMAK-LPFS--PRRF--TNE----TAIECAEKLTEIAGGELN---RVLFAPGGTSAIGMALKLARHITG 155 (459)
T ss_pred CCHHHHHHHHHHHHh-CCCc--cCcc--CCH----HHHHHHHHHHHhCCCCCC---EEEECCCcHHHHHHHHHHHHHhcC
Confidence 478999998877753 3221 1122 233 222345567888753321 2456788999999988644 233
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCC-CC-CC------CHHHHHHHhhhc-
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES-TG-LV------DYDMLEKTAILF- 250 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~-~~-~i------D~d~le~~i~~~- 250 (385)
..+|+...-.| ||... ..++..+. .+..++++.... .. .. +++.+++.++..
T Consensus 156 r~~ii~~~~~y-----HG~t~--~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 228 (459)
T PRK06082 156 NFKVVSLWDSF-----HGASL--DAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEG 228 (459)
T ss_pred CCEEEEEeCCC-----cCccH--HHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCC
Confidence 46777765332 33210 01111111 012222111000 00 01 135577776432
Q ss_pred CCcEEEEcCCC-CCC-CCC---HHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccCcc--cc
Q 016668 251 RPKLIIAGASA-YPR-DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PR 320 (385)
Q Consensus 251 ~pklIi~~~s~-~~~-~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l~G--pr 320 (385)
+...||+.+.. .+. ..+ +++|+++|+++|+++|+|+.|. |+--.|.. . .-+. ..|+++ +.|.+.| ..
T Consensus 229 ~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~~P 305 (459)
T PRK06082 229 GIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPN-GMGRTGEWFTHQAYGIEPDILC--IGKGLGGGLVP 305 (459)
T ss_pred CEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhhHhHhhCCCCCEEE--ecccccCCCCc
Confidence 34566765421 111 223 8999999999999999999984 55223321 1 1122 468887 5799854 24
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 321 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
.|.+++++ ++....+......+.+ .++...++...+|+.+.++++.+..++
T Consensus 306 ~~av~~~~------~i~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~l~~~~l~~~~~~ 356 (459)
T PRK06082 306 IAAMITKD------KYNTAAQISLGHYTHE-KSPLGCAAALATIEVIEQEGLLEKVKA 356 (459)
T ss_pred ceEEEEcH------HHHhhccCCCCCCCCC-cCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 56666665 3443332211112333 334445555556777766666554444
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-05 Score=82.59 Aligned_cols=232 Identities=14% Similarity=0.065 Sum_probs=118.8
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~---- 190 (385)
+|.|.+++.+.+.+- . +....+...++ .+..+.+++.+++..+.+ ...+.+|||+|+.+++.....
T Consensus 64 ~p~i~~Ai~~q~~~~-~--~~~~~~~~~~~----~~~~lae~L~~~~p~~~~---~v~f~~sGSEAve~AlKlAr~~~~~ 133 (459)
T PRK05965 64 QESIVEAAAEQMREL-P--YATGYFHFGSE----PAIRLAAKLAERAPGSLN---HVYFTLGGSDAVDSAVRFIRHYWNA 133 (459)
T ss_pred CHHHHHHHHHHHHhc-C--CcccccccCCH----HHHHHHHHHHhhCCCCcC---EEEEeCChhHHHHHHHHHHHHHHHh
Confidence 688899888777532 1 11111101122 222244567777643221 234557899999998865421
Q ss_pred ---C-CCEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCC-CCCCC--------HHHHHH
Q 016668 191 ---P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDES-TGLVD--------YDMLEK 245 (385)
Q Consensus 191 ---p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~-~~~iD--------~d~le~ 245 (385)
+ ..+|+..+-.| ||+-.. .+...+ ..+..++++.... ...-| ++++++
T Consensus 134 ~g~~~r~kii~~~~~Y-----HG~t~~--a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (459)
T PRK05965 134 TGRPSKKQFISLERGY-----HGSSSV--GAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRA 206 (459)
T ss_pred cCCCCccEEEEecCCc-----CcccHH--HHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHH
Confidence 2 35788776443 332100 000100 0011222211000 00112 356777
Q ss_pred Hhhhc---CCcEEEEcCCC--CCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCC
Q 016668 246 TAILF---RPKLIIAGASA--YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTH 313 (385)
Q Consensus 246 ~i~~~---~pklIi~~~s~--~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~h 313 (385)
.++.. +...||+.+.. .+. ..-+++++++|++||+++|.|+.+ .|+.-.|... .-+. ..|+++.+
T Consensus 207 ~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~-tGfGRtG~~~a~~~~gv~PDiv~~g-- 283 (459)
T PRK05965 207 KVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVI-TGFGRTGPLFACEAEGVVPDLMTVA-- 283 (459)
T ss_pred HHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-ccCccCchhhhHhhcCCCCCeEEec--
Confidence 77532 34567775421 122 223799999999999999999997 4542222211 1122 46888875
Q ss_pred ccCccc--cEEEEEEeCCCCchhHHHHHHhhc------cCC-CccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 314 KSLRGP--RGGMIFFKKDPVLGVELESAINNA------VFP-GLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 314 K~l~Gp--rgG~I~~~~~~~~~~~~~~~i~~~------~fp-~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
|.|.|- ..|.+++++ ++.+.+... ... .+.+ .|+...|+...+|+.+.++++-
T Consensus 284 Kgl~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~h~~T~~-gnpl~~Aaa~a~L~~l~~~~l~ 345 (459)
T PRK05965 284 KGLTSGYVPMGAVLMSD------HVYQGIADGAGAAAPVGHGYTYS-AHPVSAAVGLEVLRLYHEGGLL 345 (459)
T ss_pred hhhccCCcceeEEEEcH------HHHHHHhccccccccccccCCCC-CCHHHHHHHHHHHHHHHhccHH
Confidence 998432 456677776 566655421 112 2223 3444455545567777666653
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-05 Score=80.90 Aligned_cols=232 Identities=15% Similarity=0.097 Sum_probs=121.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
.+|.|.+++...+.. ....+.. . + .++ .+....+++.+++....+ ...+++|||+|+.+++....
T Consensus 48 ~hp~v~~Ai~~ql~~-~~~~~~~-~-~-~~~----~~~~lae~L~~~~p~~~~---~v~f~~sGsEAve~AlklAr~~~~ 116 (447)
T PRK06917 48 GVKEIADAIKEQAEE-VSFVYRS-Q-F-TSE----PAEKLAKKLSDLSPGDLN---WSFFVNSGSEANETAMKIAIQHFQ 116 (447)
T ss_pred CCHHHHHHHHHHHhh-CcCcccc-c-c-CCH----HHHHHHHHHHHhCCCCCC---EEEEeCChHHHHHHHHHHHHHHHH
Confidence 378888888877654 2211111 1 1 122 222345667777754322 23567899999999987552
Q ss_pred ---cC-CCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccc------cCCCC---CCCHHHHH
Q 016668 190 ---KP-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRL------DESTG---LVDYDMLE 244 (385)
Q Consensus 190 ---~p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~------~~~~~---~iD~d~le 244 (385)
.+ ..+|+...-.| ||+... .++..+. .+..++++. +.+.. .-|++.++
T Consensus 117 ~rg~t~r~~ii~~~~~y-----HG~t~~--als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le 189 (447)
T PRK06917 117 ERGIQGKHKILSRWMSY-----HGITMG--ALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELE 189 (447)
T ss_pred hcCCCCCCEEEEECCCc-----CCccHH--HHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHH
Confidence 12 36787765332 333110 1111110 011111111 00000 11346677
Q ss_pred HHhhhc---CCcEEEEcCCC--CC-C----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEEC
Q 016668 245 KTAILF---RPKLIIAGASA--YP-R----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTT 311 (385)
Q Consensus 245 ~~i~~~---~pklIi~~~s~--~~-~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S 311 (385)
+.++.. +...|++.+.. .+ . ..-+++++++|+++|+++|+|+.+. |+--.|... .-++ ..|++++
T Consensus 190 ~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t-GfGRtG~~~a~~~~gv~PDi~~~- 267 (447)
T PRK06917 190 TAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT-GLGRTGAMFAMEHWGVEPDIMTL- 267 (447)
T ss_pred HHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh-CcCcccchhhHHhcCCCCCEEEe-
Confidence 777532 34567776522 11 1 2238999999999999999999984 652233211 1122 4688765
Q ss_pred CCccCccc--cEEEEEEeCCCCchhHHHHHHhhc---cCCC-ccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 312 THKSLRGP--RGGMIFFKKDPVLGVELESAINNA---VFPG-LQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 312 ~hK~l~Gp--rgG~I~~~~~~~~~~~~~~~i~~~---~fp~-~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
.|.+.|- ..|.+++++ ++.+.+... .+.+ ++ +.++...++...+++.+.++++.
T Consensus 268 -gK~l~~G~~Pi~a~~~~~------~i~~~~~~~~~~~~~~~T~-~gnpl~~aaa~a~l~~l~~~~l~ 327 (447)
T PRK06917 268 -GKGLGAGYTPIAATVVSD------RVMEPILRGSRSIMSGHTL-SANPLSAATALAVLEYMEKHNLP 327 (447)
T ss_pred -eehhccCCcceEEEEEcH------HHHHHHhccCcccccccCC-CCCHHHHHHHHHHHHHHHHCCHH
Confidence 6998542 466777776 566665432 2222 23 23444556656677777665553
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-05 Score=80.36 Aligned_cols=229 Identities=16% Similarity=0.065 Sum_probs=117.1
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~---- 190 (385)
.|.|.+++...+..- . +... .+ .++ .+..+.+++.++++... ...+..|||+|+..++.....
T Consensus 65 ~p~v~~ai~~q~~~~-~--~~~~-~~-~~~----~~~~lae~l~~~~~~~~----~v~f~~sGseA~e~AlklAr~~t~~ 131 (451)
T PRK07678 65 RKELAEAAYEQLKTL-S--YFPL-TQ-SHE----PAIKLAEKLNEWLGGEY----VIFFSNSGSEANETAFKIARQYHAQ 131 (451)
T ss_pred CHHHHHHHHHHHHhc-C--cccc-cc-CCH----HHHHHHHHHHHhCCCCC----EEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 688888877766532 1 1111 11 233 22224556777776532 234567999999998865421
Q ss_pred ---CC-CEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCC-CC-----CCC---HHHHHH
Q 016668 191 ---PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDES-TG-----LVD---YDMLEK 245 (385)
Q Consensus 191 ---pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~-~~-----~iD---~d~le~ 245 (385)
+| .+|+...-.| ||+... .++..+. .+..++++.... .. ..| ++.+++
T Consensus 132 ~g~~~r~~ii~~~~~y-----HG~t~~--als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (451)
T PRK07678 132 KGEPHRYKFISRYRAY-----HGNSMG--ALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDR 204 (451)
T ss_pred cCCCCCcEEEEECCCc-----CCccHH--HhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHH
Confidence 23 5777765332 332100 1111110 112222110000 00 011 233565
Q ss_pred Hhhh---cCCcEEEEcCCC--CCCC----CCHHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEECCC
Q 016668 246 TAIL---FRPKLIIAGASA--YPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTH 313 (385)
Q Consensus 246 ~i~~---~~pklIi~~~s~--~~~~----~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S~h 313 (385)
.++. .++..||+.+.. .+.. .-+++++++|+++|+++|.|+.+ .|+.-.|.. ..-+. ..|++++ .
T Consensus 205 ~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~-tGfGRtG~~~~~~~~gv~PDivt~--g 281 (451)
T PRK07678 205 VMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVI-CGFGRTGKAFGFMNYGVKPDIITM--A 281 (451)
T ss_pred HHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh-hcCCcCchhHHHHhcCCCCCEEEe--e
Confidence 5641 234567776421 2222 22899999999999999999998 343212211 11133 4688876 5
Q ss_pred ccCcc--ccEEEEEEeCCCCchhHHHHHHhhc-----cC-CCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 314 KSLRG--PRGGMIFFKKDPVLGVELESAINNA-----VF-PGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 314 K~l~G--prgG~I~~~~~~~~~~~~~~~i~~~-----~f-p~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
|.|.| ...|.+++++ ++.+.+... .+ .++++ .++...|+..++|+.+.++++.
T Consensus 282 K~lggG~~Pi~av~~~~------~i~~~~~~~~~~~~~~h~~T~~-gnp~~~aaa~a~l~~l~~~~~~ 342 (451)
T PRK07678 282 KGITSAYLPLSATAVKK------EIYEAFKGKGEYEHFRHVNTFG-GNPAACALALKNLEIMENENLI 342 (451)
T ss_pred cccccCCcceeEEEEcH------HHHHHHhccCcccccccCCCCC-cCHHHHHHHHHHHHHHHhCCHH
Confidence 99854 2566677776 566666431 11 22333 3444555555578777666653
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.4e-05 Score=79.36 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=64.8
Q ss_pred CCcEEEEcCCC--CCCCC----CHHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEECCCccCcc--c
Q 016668 251 RPKLIIAGASA--YPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG--P 319 (385)
Q Consensus 251 ~pklIi~~~s~--~~~~~----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S~hK~l~G--p 319 (385)
++..|++.+.. .+... -+++++++|+++|+++|.|+.+. |+.-.|.. ..-++ ..|+++.+ |.+.| .
T Consensus 213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~ 289 (449)
T PRK07481 213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVT-GFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYV 289 (449)
T ss_pred cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhh-CcCcCchhhHhhhcCCCCCEEEEe--ecccCCCc
Confidence 34567776431 12221 28999999999999999999974 54222221 11122 46888774 99854 2
Q ss_pred cEEEEEEeCCCCchhHHHHHHhhc------cCC-CccCCChHHHHHHHHHHHHHhhCchH
Q 016668 320 RGGMIFFKKDPVLGVELESAINNA------VFP-GLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 320 rgG~I~~~~~~~~~~~~~~~i~~~------~fp-~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
..|.+++++ ++.+.+... ... .+++ .++-..++...+|+.+.++++
T Consensus 290 Pi~av~~~~------~i~~~~~~~~~~~~~~~h~~T~~-gnpl~~aaa~a~L~~l~~~~l 342 (449)
T PRK07481 290 PLGATMVNA------RIADAFEANADFGGAIMHGYTYS-GHPVACAAALATLDIVVREDL 342 (449)
T ss_pred CceEEEEcH------HHHHHHhccCccccccccCCCCC-CCHHHHHHHHHHHHHHHhhhH
Confidence 456667776 566666432 111 2232 234445555557777766554
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4e-06 Score=78.59 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=107.3
Q ss_pred eeecCCcHH-HHHHHHHHhccCC-CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhh
Q 016668 171 NVQPLSGSP-ANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI 248 (385)
Q Consensus 171 ~V~~~sGs~-A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~ 248 (385)
++...-|+. .+-+++.+.+.|| |+|+..+|+++-+.- .+..-+. +++.+++++ ++.+|.|++.+.++
T Consensus 88 nic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v--------~A~iNd~--eVvkvpl~p-dF~lnvdai~evl~ 156 (375)
T KOG0633|consen 88 NICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVV--------DAAINDA--EVVKVPLNP-DFSLNVDAIAEVLE 156 (375)
T ss_pred ceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEE--------EeecCCc--eEEEecCCC-CccccHHHHHHHHh
Confidence 555666774 8888889999999 899999988754321 1123334 344444554 57899999999886
Q ss_pred hc-CCcEEEEcCCCCCC--CCCHHHHHHHHHHc-CcEEEEeccccccccccCc-ccCCCCCCc-EEEECCCccC--cccc
Q 016668 249 LF-RPKLIIAGASAYPR--DFDYPRMRQIADAV-GALLMMDMAHISGLVAASV-VADPFKYCD-VVTTTTHKSL--RGPR 320 (385)
Q Consensus 249 ~~-~pklIi~~~s~~~~--~~dl~~I~~ia~~~-ga~livD~ah~~Gli~~g~-~~~p~~gaD-iv~~S~hK~l--~Gpr 320 (385)
.. ++|++++.+|.+|+ .+..+-|.+|...- +.++++|+|+ ..+.+.+. .+..-++-. ++..+++|+| +|-|
T Consensus 157 ~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAY-idFsg~~S~~~lV~kYpNLivlqTlSKsfGLAGiR 235 (375)
T KOG0633|consen 157 LDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAY-IDFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGIR 235 (375)
T ss_pred ccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeee-EeeccccccchHhHhCCceeehhhhhhhcCcceeE
Confidence 54 78999999888874 33344455554432 6899999996 34332111 111111555 6788999996 7788
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCc
Q 016668 321 GGMIFFKKDPVLGVELESAINNAVFPGL 348 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~~fp~~ 348 (385)
.|+-+... .+.+-+++.--|.-
T Consensus 236 vG~~~~~~------~ia~iln~~KaPYN 257 (375)
T KOG0633|consen 236 VGYGAFPL------SIAEILNRAKAPYN 257 (375)
T ss_pred eecccccH------HHHHHHHhccCCcc
Confidence 89888877 57777777765553
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-05 Score=80.15 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=120.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
-.|.|.+++...+.. ....... .+ .++ ......+++.+++....+ ...+.+|||+|+..++....
T Consensus 64 ~~p~v~~Ai~~ql~~-l~~~~~~-~~--~~~----~~~~lae~L~~~~p~~~~---~v~f~~sGsEAve~AlKlAr~~~~ 132 (466)
T PRK07030 64 ANPRINQRIKDQVDQ-LEHVILA-GF--SHE----PVIELSERLVKITPPGLS---RCFYADNGSSAIEVALKMSFHYWR 132 (466)
T ss_pred CCHHHHHHHHHHHHh-cCCcccc-cc--CCH----HHHHHHHHHHHhCCCCcC---EEEEeCCcHHHHHHHHHHHHHHHH
Confidence 368888888777643 2111110 11 122 222234567777642221 23556889999999887542
Q ss_pred --c-C-CCEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccC--CCC-------CCCHHHHH
Q 016668 190 --K-P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDE--STG-------LVDYDMLE 244 (385)
Q Consensus 190 --~-p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~--~~~-------~iD~d~le 244 (385)
. + ..+|+...-.| ||+... .++..+. .+..++++... ..+ .-+++.++
T Consensus 133 ~~g~t~r~~ii~~~~~y-----HG~t~g--a~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le 205 (466)
T PRK07030 133 NRGKPRKKRFVTLTNSY-----HGETLA--AMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHME 205 (466)
T ss_pred HhCCCCCcEEEEECCCc-----CcccHH--HHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHH
Confidence 1 2 35677766432 332100 0111110 01122221100 000 11356677
Q ss_pred HHhhhc--CCcEEEEcC-C-C-CCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECC
Q 016668 245 KTAILF--RPKLIIAGA-S-A-YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTT 312 (385)
Q Consensus 245 ~~i~~~--~pklIi~~~-s-~-~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~ 312 (385)
+.+... +...|++.+ . . .+. ..-+++++++|+++|+++|.|+.+ .|+--.|... ..++ ..|+++++
T Consensus 206 ~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~-TGfGRtG~~~a~~~~gv~PDiv~~g- 283 (466)
T PRK07030 206 QTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIA-VGFGRTGTMFACEQAGIRPDFLCLS- 283 (466)
T ss_pred HHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh-hCcCccccchHHHhcCCCCCEEeee-
Confidence 777532 345677765 2 1 222 123899999999999999999997 4442222211 1122 46888874
Q ss_pred CccCccc--cEEEEEEeCCCCchhHHHHHHhhc------cC-CCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 313 HKSLRGP--RGGMIFFKKDPVLGVELESAINNA------VF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 313 hK~l~Gp--rgG~I~~~~~~~~~~~~~~~i~~~------~f-p~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
|.+.|- ..|.+++++ ++.+.+... .+ ..+++ .++-..++..++|+.+.++++.+.+
T Consensus 284 -Kgl~gG~~Pi~av~~~~------ei~~~~~~~~~~~~~~~h~~T~~-gnpla~aaa~a~L~~i~~~~l~~~~ 348 (466)
T PRK07030 284 -KALTGGYLPLAAVLTTD------TVYQAFYDDYPTLRAFLHSHSYT-GNPLACAAALATLDIFEQDNVIENN 348 (466)
T ss_pred -hhccCCcccceEEEecH------HHHHHHhcccccccccccCCCCC-CCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 988442 566777777 566655321 11 22233 3444555555578877776664433
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-05 Score=88.06 Aligned_cols=233 Identities=17% Similarity=0.121 Sum_probs=120.8
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
.|.|.+++...+..-.. ..++ .++ .+....+++.+++....+ ...+++|||+|+..++... ....
T Consensus 640 hp~v~~Ai~~q~~~l~~----~~~~--~~~----~~~~lAe~L~~~~p~~~~---~v~f~nSGsEA~e~AlklAr~~tGr 706 (1013)
T PRK06148 640 HPRVVAAAARQAARLNT----NTRY--LHD----AIVAYAERLTATLPDGLT---VAFFVNSGSEANSLALRLARAHTGQ 706 (1013)
T ss_pred CHHHHHHHHHHHhhcCC----cCCc--CCH----HHHHHHHHHHHhCCCCcC---EEEEeCCcHHHHHHHHHHHHHhcCC
Confidence 78999998877653211 1122 122 222345667777753221 2356789999999998754 2334
Q ss_pred CEEeecCCCCCccccCCccccccccccCc------------ceEEEEecccc-CCCCC-CC-------HHHHHHHhhh--
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLD-ESTGL-VD-------YDMLEKTAIL-- 249 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~-~~~~~-iD-------~d~le~~i~~-- 249 (385)
.+|++.+-.| ||+... .+...+ ..+..++.+.. ..... .| .+.+++.++.
T Consensus 707 ~~ii~~~~~Y-----HG~t~~--a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 779 (1013)
T PRK06148 707 RDAIVLDHAY-----HGTTTE--LIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMA 779 (1013)
T ss_pred CeEEEEcCCc-----cCCCcc--hhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhh
Confidence 5787765332 333110 011111 00111111100 00000 11 1345555431
Q ss_pred ---cCCcEEEEcCC--CCCCCC----CHHHHHHHHHHcCcEEEEeccccccccccCc--cc-CCCC-CCcEEEECCCccC
Q 016668 250 ---FRPKLIIAGAS--AYPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASV--VA-DPFK-YCDVVTTTTHKSL 316 (385)
Q Consensus 250 ---~~pklIi~~~s--~~~~~~----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~--~~-~p~~-gaDiv~~S~hK~l 316 (385)
.++..||+.+. ..+... -+++++++|+++|+++|.|+.+ .|+.-.|. +- .-++ ..|+++. .|.+
T Consensus 780 ~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVq-tGfGRtG~~~~a~e~~gv~PDivt~--gK~l 856 (1013)
T PRK06148 780 AKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQ-VGFGRVGSHWWAFETQGVVPDIVTM--GKPI 856 (1013)
T ss_pred ccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecc-cCCCCCCCcchhhhhcCCCcceeee--cccc
Confidence 23556777542 122222 2899999999999999999998 34421221 11 1112 4588776 5998
Q ss_pred c-cccEEEEEEeCCCCchhHHHHHHhhcc-CCCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 317 R-GPRGGMIFFKKDPVLGVELESAINNAV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 317 ~-GprgG~I~~~~~~~~~~~~~~~i~~~~-fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
. |...|.+++++ ++.+.++... +..++++.... .++..+.++.+.+++..+.++
T Consensus 857 ggG~Plgav~~~~------ei~~~~~~g~~~~~Tf~gnpla-~aaa~a~L~~i~~e~l~~~~~ 912 (1013)
T PRK06148 857 GNGHPMGAVVTTR------EIADSFDNGMEYFNTFGGNPVS-CAIGLAVLDIIEDEDLQRNAL 912 (1013)
T ss_pred cCCcceEEEEEcH------HHHhhccCCCccccCCCCCHHH-HHHHHHHHHHHhhccHHHHHH
Confidence 4 44567777776 5777665442 33444444434 444444677776666544333
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.9e-05 Score=78.70 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=73.7
Q ss_pred CHHHHHHHhhh--cCCcEEEEcCC---CCCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCc
Q 016668 239 DYDMLEKTAIL--FRPKLIIAGAS---AYPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCD 306 (385)
Q Consensus 239 D~d~le~~i~~--~~pklIi~~~s---~~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaD 306 (385)
+++.+++.+.. .+...||+.+. ..+. ..-+++++++|+++|++||.|+.+ .|+.-.|... .-++ ..|
T Consensus 222 ~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~-TGfGRtG~~~a~e~~gv~PD 300 (472)
T PRK08742 222 AADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIA-TGFGRTGTLFACEQAGVMPD 300 (472)
T ss_pred HHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh-hCCCCCccchHHHhcCCCCC
Confidence 35667777643 23456777652 2222 223899999999999999999997 4442223211 1122 468
Q ss_pred EEEECCCccCc-cc-cEEEEEEeCCCCchhHHHHHHhhc----c-CCC-ccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 307 VVTTTTHKSLR-GP-RGGMIFFKKDPVLGVELESAINNA----V-FPG-LQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 307 iv~~S~hK~l~-Gp-rgG~I~~~~~~~~~~~~~~~i~~~----~-fp~-~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
+++++ |.|. |- ..|.+++++ ++.+.+... . +.+ +.+ .++...|+...+|+.+.++++.+.+
T Consensus 301 iv~~g--Kgl~gG~~Plaav~~~~------ei~~~~~~~~~~~~~~h~~T~~-gnpl~~Aaa~a~L~~i~~~~l~~~~ 369 (472)
T PRK08742 301 LLCLS--KGLTGGFLPLSAVLATQ------QLYDAFLDDSRERAFLHSHSYT-GNPLACAAALATLDIFADDDVIARN 369 (472)
T ss_pred EEEEc--ccccCCCCCcceeeccH------HHHHHhhccCccCccCcCCCCC-ccHHHHHHHHHHHHHHHHCCHHHHH
Confidence 88875 9984 41 455566666 465555321 1 112 222 3445566656678777776664333
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-05 Score=77.76 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=116.8
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----- 189 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all----- 189 (385)
+|.+.+++...+.. ....... . + -++. .....+++.++++-..+ ...+..||++|+..++....
T Consensus 34 ~p~i~~ai~~~~~~-~~~~~~~-~-~-~~~~----~~~la~~L~~~~p~~~~---~v~f~~sGseAve~Alkla~~~~~~ 102 (339)
T PF00202_consen 34 HPEIAEAIAEQANK-LNYVSFS-G-F-THPE----AAELAEKLAELFPGGLD---RVFFANSGSEAVEAALKLARQYHNK 102 (339)
T ss_dssp -HHHHHHHHHHHHH-CSSCSTT-T-S-EEHH----HHHHHHHHHHHSSTTEE---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHhhh-ccccccc-c-e-eccc----hhhhhhhhhhccccccc---eeeeccCchHHHHHHHHHhhccccc
Confidence 58888888766543 2211111 1 1 1222 22244578888833221 23556899999999986554
Q ss_pred ---cCCCEEeecCCCCCccccCCccc-----ccc-ccccCcceEEEEeccccCC--CCCCCHHHHHHHhh---hcCCcEE
Q 016668 190 ---KPHDRIMGLDLPHGGHLSHGFMT-----PKR-RVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAI---LFRPKLI 255 (385)
Q Consensus 190 ---~pGD~Vl~~~~~~ggh~s~~~~~-----~~~-~~~~~g~~~~~i~~~~~~~--~~~iD~d~le~~i~---~~~pklI 255 (385)
....+|+...-.|-|.-. +... ... ...-....+..+|++.... ...-..+++++.+. ..+...|
T Consensus 103 ~~~~~r~~il~~~~~yHG~t~-~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaav 181 (339)
T PF00202_consen 103 RAYTGRRKILAFEGSYHGRTL-GALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAV 181 (339)
T ss_dssp THHHTTTEEEEETTTB-TSSH-HHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred ccccCCceEEEeeeeeeccCc-ccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEE
Confidence 244688877644322210 0000 000 0000001123334321100 00001112333322 2234467
Q ss_pred EEcCCC--CC----CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccEEEEE
Q 016668 256 IAGASA--YP----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIF 325 (385)
Q Consensus 256 i~~~s~--~~----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-GprgG~I~ 325 (385)
|+.+.. .+ ...-+++|+++|+++|+++|+|+.+ .|+.-.|... ..+. ..|+++++ |.|. |...+.++
T Consensus 182 ivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~-tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p~sav~ 258 (339)
T PF00202_consen 182 IVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQ-TGFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLPISAVL 258 (339)
T ss_dssp EEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETT-TTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSSEEEEE
T ss_pred EEeccccccCccccccchhhehcccccccccceeccccc-ccccccCCccceecccccCcccccc--cchhhhhhccccc
Confidence 776521 12 2223799999999999999999998 4542223211 1112 46999887 9994 45667788
Q ss_pred EeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 326 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 326 ~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
+++ ++.+.+.......+++ -++...++....|+.+.++++.+
T Consensus 259 ~~~------~i~~~~~~~~~~~T~~-g~p~~~aaa~~~l~~~~~~~~~~ 300 (339)
T PF00202_consen 259 GSE------EIMEAFQPGSHGSTFG-GNPLSCAAALATLEILEEEDLLE 300 (339)
T ss_dssp EEH------HHHTTSCTTSSTCTTT-T-HHHHHHHHHHHHHHHHTTHHH
T ss_pred ccc------hhhccccccccccccc-cchHhhhhhhhHHHhhccHHHHH
Confidence 887 5666553333223332 23345555555777776665543
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.4e-05 Score=80.81 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=116.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeec-CCcHHHHHHHHHHhc--c
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPANFEVYTAIL--K 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~-~sGs~A~~~a~~all--~ 190 (385)
.+|.|.+++...+.+....... .+ .++. ..+ ..+++.+++..+...-...+++ .|||+|+..++.... .
T Consensus 80 ~~p~v~~Ai~~ql~~~~~~~~~---~~-~~~~---~~~-la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~t 151 (464)
T PRK06938 80 NHPVVIEAIQQVLADELPLHTL---DL-TTPV---KDQ-FVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTAT 151 (464)
T ss_pred CCHHHHHHHHHHHHhhhccccc---cc-CCHH---HHH-HHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhh
Confidence 3788888888777532211110 11 1221 112 2344555553221000012344 599999999987542 2
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCC--------CC-CCCHHHHHHHhhh
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDES--------TG-LVDYDMLEKTAIL 249 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~--------~~-~iD~d~le~~i~~ 249 (385)
...+|+...-.| ||+... .++..+ ..+..++++.... +. ..+.+.+++.++.
T Consensus 152 gr~~ii~~~~~y-----HG~t~~--als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 224 (464)
T PRK06938 152 GRSTVLSFQGGY-----HGMSQG--ALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDD 224 (464)
T ss_pred CCCeEEEECCcc-----CCccHH--HHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHh
Confidence 346777765332 332100 011110 0122333322100 00 1236778887753
Q ss_pred c-----CCcEEEEcCCC--CCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCcc
Q 016668 250 F-----RPKLIIAGASA--YPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKS 315 (385)
Q Consensus 250 ~-----~pklIi~~~s~--~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~ 315 (385)
. ++..||+.+.. .+. ..-+++++++|+++|+++|.|+.+ .|+--.|... .-++ ..|+++.+ |.
T Consensus 225 ~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~-tGfGRtG~~~a~e~~gv~PDiv~~g--Kg 301 (464)
T PRK06938 225 PESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQ-SGFGRTGKMFAFEHAGIIPDVVVLS--KA 301 (464)
T ss_pred hccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCcHHHHHHhcCCCCCEEEee--cc
Confidence 2 34567775421 121 223899999999999999999997 4542223211 1122 46888875 98
Q ss_pred Ccc-ccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 316 LRG-PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 316 l~G-prgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
+.| -..|.+++++ ++ +.+.......++++ ++-..++..+.|+.+.++++.+.+
T Consensus 302 lggG~PlsAv~~~~------~~-~~~~~~~~~~T~~g-npla~Aaa~a~L~~l~~~~l~~~~ 355 (464)
T PRK06938 302 IGGSLPLAVVVYRE------WL-DTWQPGAHAGTFRG-NQMAMAAGSATLRYIKEHRLAEHA 355 (464)
T ss_pred ccCCCceEEEeehh------Hh-hccCCCCCCCCCCc-CHHHHHHHHHHHHHHHHhHHHHHH
Confidence 843 3456666665 33 33322222223333 334454545567766665554333
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.8e-06 Score=79.75 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=126.6
Q ss_pred HHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCC--CCCccccCCccccccccccCcceEEEEec----
Q 016668 156 RALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDL--PHGGHLSHGFMTPKRRVSGTSIYFESMPY---- 229 (385)
Q Consensus 156 ~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~--~~ggh~s~~~~~~~~~~~~~g~~~~~i~~---- 229 (385)
.+++.||.++ .+-+.-|-.|-...+..++++|+.+...-. ..+.|+.... ..+...|..+.-++.
T Consensus 87 avkdifGfq~-----~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr----~h~~~ng~~~~n~~~~ea~ 157 (471)
T COG3033 87 AVKDIFGFQY-----TIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTR----GHIQINGATPRNVYVDEAF 157 (471)
T ss_pred HHHHhcCcee-----eeeccCCccHHHHHHHHHhhhccccCCccccccccceecchh----HHHHhcCCccccccccccc
Confidence 4678999887 355566777777777778888776654111 1123433110 112222332222211
Q ss_pred --ccc-CCCCCCCHHHHHHHhhhcCC---cEEEE---cCCCCCC---CCCHHHHHHHHHHcCcEEEEecccccc---ccc
Q 016668 230 --RLD-ESTGLVDYDMLEKTAILFRP---KLIIA---GASAYPR---DFDYPRMRQIADAVGALLMMDMAHISG---LVA 294 (385)
Q Consensus 230 --~~~-~~~~~iD~d~le~~i~~~~p---klIi~---~~s~~~~---~~dl~~I~~ia~~~ga~livD~ah~~G---li~ 294 (385)
.++ +-.|.+|++.|++++++..+ -.|++ +.+..+. ..+++++.+||+++|+.++.|++..+. ++-
T Consensus 158 d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk 237 (471)
T COG3033 158 DTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIK 237 (471)
T ss_pred cccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhh
Confidence 111 12468999999999976443 24433 3333332 346899999999999999999875432 111
Q ss_pred c---CcccCC--------CCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHh-----hccCCCccCCChHHHHH
Q 016668 295 A---SVVADP--------FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN-----NAVFPGLQGGPHNHTIG 358 (385)
Q Consensus 295 ~---g~~~~p--------~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~-----~~~fp~~qg~p~~~~ia 358 (385)
. |..... +.++|-++.|.-|--..+-||+++.+++-. .++..... +--|| ..||..--.+.
T Consensus 238 ~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmGGfl~~~D~~~--fDvy~~~~~~~V~~eG~~-tYGgl~Grdme 314 (471)
T COG3033 238 QREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMGGFLCFKDDSF--FDVYEECRTLVVVQEGFP-TYGGLAGRDME 314 (471)
T ss_pred hcCcccccccHHHHHHHHHhhhhhheeeccccceeccccEEEecCccH--HHHHHHHHhheEeecccc-ccCcccchhHH
Confidence 1 111111 127899999999975557889999998721 02222221 11122 34667777899
Q ss_pred HHHHHHHHhhCchHHHH-HHHH
Q 016668 359 GLAVCLKHAQSPEFKVY-QNKS 379 (385)
Q Consensus 359 ala~Al~e~~~~~~~~y-~~~v 379 (385)
++|+.|.|..+.+|-+| ..||
T Consensus 315 alAvGL~e~~~~~yl~~Rv~Qv 336 (471)
T COG3033 315 ALAVGLREGVNFDYLAHRVAQV 336 (471)
T ss_pred HHHHHHHHhcCcHHHHHHHHHH
Confidence 99999999999999544 3443
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-05 Score=79.90 Aligned_cols=231 Identities=15% Similarity=0.093 Sum_probs=117.8
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
.+|.|.+++...+.+- . +....++ .++ ... ...+++.+++....+ ...+.+|||+|+.+++... ...
T Consensus 70 ~~p~i~~Ai~~ql~~~-~--~~~~~~~-~~~---~~~-~lae~L~~~~p~~~~---~v~f~~SGsEA~e~AlklAr~~tg 138 (457)
T PRK05639 70 SHPKLVKAVQEQVALI-Q--HSMIGYT-HSE---RAI-RVAEKLAEISPIENP---KVLFGLSGSDAVDMAIKVSKFSTR 138 (457)
T ss_pred CCHHHHHHHHHHHHhc-c--ccccCcc-CCH---HHH-HHHHHHHhhCCCCcC---EEEEeCchHHHHHHHHHHHHHhcC
Confidence 3788888888776532 1 1111111 122 112 244567777654322 2356789999999988754 234
Q ss_pred CCEEeecCCCCCccccCCccccccccccCc-------------ceEEEEeccccCC-----CCCCCH--------HHHHH
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-------------IYFESMPYRLDES-----TGLVDY--------DMLEK 245 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-------------~~~~~i~~~~~~~-----~~~iD~--------d~le~ 245 (385)
..+|+...-.| ||+... .++..+ ..+..++++.... +..-|. +.+++
T Consensus 139 r~~ii~~~~~y-----HG~t~~--a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 211 (457)
T PRK05639 139 RPWILAFIGAY-----HGQTLG--ATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLEN 211 (457)
T ss_pred CCeEEEECCCc-----CCccHH--HHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHH
Confidence 45677765332 332100 001100 0123334321100 000122 23444
Q ss_pred Hhh-----hcCCcEEEEcCCC--CC----CCCCHHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEEC
Q 016668 246 TAI-----LFRPKLIIAGASA--YP----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTT 311 (385)
Q Consensus 246 ~i~-----~~~pklIi~~~s~--~~----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S 311 (385)
.+. ..+...||+.+.. .+ ...-+++|+++|+++|+++|+|+.|. |+.-.|.. ..-++ ..|+++
T Consensus 212 ~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDiv~-- 288 (457)
T PRK05639 212 YVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT-GIGRTGKWFASEWFEVKPDLII-- 288 (457)
T ss_pred HHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcCchHHHHHhcCCCCCEEE--
Confidence 432 1234567775421 12 12238999999999999999999995 65323321 11122 468888
Q ss_pred CCccCc-cccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 312 THKSLR-GPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 312 ~hK~l~-GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
+.|.+. |...|.+++++ ++.+......+ .+.+ .++...++..++|+.+.++++.
T Consensus 289 ~gK~l~gG~pi~av~~~~------~i~~~~~~~~~-~T~~-g~p~~~aaa~a~l~~l~~~~l~ 343 (457)
T PRK05639 289 FGKGVASGMGLSGVIGRK------ELMDLTSGSAL-LTPA-ANPVISAAAEATLEIIEEENLL 343 (457)
T ss_pred echhhcCCCcceeEEehH------HHHhhcCCCcc-cCCC-cCHHHHHHHHHHHHHHHHccHH
Confidence 579995 44457777777 45552222222 2333 3344455555578777666653
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.9e-06 Score=86.16 Aligned_cols=159 Identities=20% Similarity=0.202 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCCCCCCCcceeecCCcHHH---HHHHHHHhc-cCCC----EEeecCCCCCccccCCccccccccccCcce
Q 016668 152 LCQKRALAAFNLDENKWGVNVQPLSGSPA---NFEVYTAIL-KPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIY 223 (385)
Q Consensus 152 ~~~~~la~lfg~~~~~~~~~V~~~sGs~A---~~~a~~all-~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~ 223 (385)
...+++.++.|.|. +.+|+.||.++ -+.++.+.+ .+|+ ..+++-..||-++. .+.++|.+
T Consensus 586 ~Le~~Lc~iTG~D~----~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA--------SA~Magmk 653 (1001)
T KOG2040|consen 586 ELEKDLCEITGFDS----FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA--------SAAMAGMK 653 (1001)
T ss_pred HHHHHhheeecccc----eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh--------hHHhcCCE
Confidence 34668999999987 57899999864 344556654 3443 34555555554432 33466764
Q ss_pred EEEEeccccCCCCCCCHHHHHHHhhhcCCc--EEEEcCC-CCC-CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 224 FESMPYRLDESTGLVDYDMLEKTAILFRPK--LIIAGAS-AYP-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 224 ~~~i~~~~~~~~~~iD~d~le~~i~~~~pk--lIi~~~s-~~~-~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
+++++.+ .+|.||+.+|+..+++++-+ .+.+.+| .++ ...+++++.++.++||--+..|+|.....+ | .-
T Consensus 654 --vvpV~~~-~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqV--G-lc 727 (1001)
T KOG2040|consen 654 --VVPVGCD-ANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMNAQV--G-LC 727 (1001)
T ss_pred --EEEeecc-CCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCcccee--c-cc
Confidence 5555565 47899999999998765433 3444444 455 566899999999999999999988643222 1 12
Q ss_pred CCCC-CCcEEEECCCccCcc------ccEEEEEEeC
Q 016668 300 DPFK-YCDVVTTTTHKSLRG------PRGGMIFFKK 328 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~G------prgG~I~~~~ 328 (385)
.|-+ |+|+.--.+||||.= |-+|-|..++
T Consensus 728 ~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~ 763 (1001)
T KOG2040|consen 728 RPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK 763 (1001)
T ss_pred CCccccccceeecccceeeecCCCCCCCCCccchhh
Confidence 4555 899999999999843 4345565555
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.1e-05 Score=77.98 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=71.8
Q ss_pred HHHHHHhhh---cCCcEEEEcCCC--C-CC----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcE
Q 016668 241 DMLEKTAIL---FRPKLIIAGASA--Y-PR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDV 307 (385)
Q Consensus 241 d~le~~i~~---~~pklIi~~~s~--~-~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDi 307 (385)
+++++.+.. .+...|++.+.. . +. ..-+++++++|+++|+++|.|+.+. |+.-.|... .-+. ..|+
T Consensus 186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfGRtG~~~a~~~~gv~PDi 264 (443)
T PRK07483 186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC-GMGRTGTLFACEEDGVAPDL 264 (443)
T ss_pred HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee-CcccCcHHHHHhhcCCCCCe
Confidence 566665532 234567776432 1 21 1238999999999999999999984 542233211 1122 4688
Q ss_pred EEECCCccCc-cc-cEEEEEEeCCCCchhHHHHHHhhcc---CC-CccCCChHHHHHHHHHHHHHhhCchHHHH
Q 016668 308 VTTTTHKSLR-GP-RGGMIFFKKDPVLGVELESAINNAV---FP-GLQGGPHNHTIGGLAVCLKHAQSPEFKVY 375 (385)
Q Consensus 308 v~~S~hK~l~-Gp-rgG~I~~~~~~~~~~~~~~~i~~~~---fp-~~qg~p~~~~iaala~Al~e~~~~~~~~y 375 (385)
+++ .|.+. |. ..|.+++++ ++.+.+.... +. .+++ .++...++..++++.+.++++.+.
T Consensus 265 v~~--gK~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~h~~T~~-gnpl~~aaa~a~l~~i~~~~l~~~ 329 (443)
T PRK07483 265 VTI--AKGLGAGYQPIGAVLASD------RIYDAIADGSGFFQHGHTYL-GHATACAAALAVQRVIAEDGLLAN 329 (443)
T ss_pred eee--hhhhccCccccEEEEEcH------HHHHHHhcCCCccccCCCCC-CCHHHHHHHHHHHHHHHhcCHHHH
Confidence 877 49984 42 466677776 5666664321 12 2232 334445555557777766665433
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=88.76 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCCCCCCcceeecC-CcHHHHHHHHHHh-c--cCCCEEeecCCCCCccccCCccccccccccCcceEEEEe
Q 016668 153 CQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAI-L--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~-sGs~A~~~a~~al-l--~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~ 228 (385)
.+..++++.|.+.. |.... .+|.+..+++++. . +++++|++++..|..+. .+.. ..+...|. +++.
T Consensus 114 ~Qt~i~eLtGm~~a----NaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~---~v~~-t~a~~~g~--~v~~ 183 (939)
T TIGR00461 114 FQTVVSDLTGLPVA----NASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTK---SVLH-TRAKPFGI--EVIV 183 (939)
T ss_pred HHHHHHHHHCCChh----hhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchH---HHHH-HHHHhcCc--EEEE
Confidence 57789999999973 33333 3444555555554 2 34589999886553221 1000 01234444 3332
Q ss_pred ccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCc
Q 016668 229 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD 306 (385)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaD 306 (385)
+|+++|++.+ +...+++.+|+ +|...|+++|.+++|++|++++++.-..+. .....|-+ |+|
T Consensus 184 ---------~~~~~l~~~~---~~~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al----~ll~~Pge~GaD 247 (939)
T TIGR00461 184 ---------VDCSDIKKAV---DVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMAL----TLLTPPGHYGAD 247 (939)
T ss_pred ---------EcHHHHhhcC---CEEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHh----CCcCCHHHcCCc
Confidence 2455666554 24566665555 577779999999999999999997544322 22345556 999
Q ss_pred EEEECCCcc-----CccccEEEEEEeCC
Q 016668 307 VVTTTTHKS-----LRGPRGGMIFFKKD 329 (385)
Q Consensus 307 iv~~S~hK~-----l~GprgG~I~~~~~ 329 (385)
|++++.+++ ++||..|++.++++
T Consensus 248 i~vg~~q~fg~p~g~GGP~aG~~a~~~~ 275 (939)
T TIGR00461 248 IVLGSSQRFGVPMGYGGPHAAFFAVKDE 275 (939)
T ss_pred EEeeCCCccCCCCCCCCCceeeeeecHh
Confidence 998877775 35899999999885
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00016 Score=74.76 Aligned_cols=122 Identities=18% Similarity=0.141 Sum_probs=70.0
Q ss_pred HHHHHHhhh---cCCcEEEEcCCC--CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCc-c--cCCCC-CCcE
Q 016668 241 DMLEKTAIL---FRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-V--ADPFK-YCDV 307 (385)
Q Consensus 241 d~le~~i~~---~~pklIi~~~s~--~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~--~~p~~-gaDi 307 (385)
+.+++.+.. .++..||+.+.. .+...+ +++|+++|++||+++|+|+.+ .|+.-.|. + ..-+. ..|+
T Consensus 207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~-tGfGRtG~~~~~~~~~gv~PDi 285 (466)
T PRK07036 207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVV-TGFGRLGHFFASEAVFGIQPDI 285 (466)
T ss_pred HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeech-hCCCcCchhhhhhhhcCCCCCE
Confidence 345555532 234567776431 222222 899999999999999999998 34422221 1 11122 4688
Q ss_pred EEECCCccCccc--cEEEEEEeCCCCchhHHHHHHhhc-----c-CCC-ccCCChHHHHHHHHHHHHHhhCchH
Q 016668 308 VTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINNA-----V-FPG-LQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 308 v~~S~hK~l~Gp--rgG~I~~~~~~~~~~~~~~~i~~~-----~-fp~-~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+++ .|.+.|- ..|.+++++ ++.+.+... . ..+ +.+ .++...++....|+.+.++++
T Consensus 286 vt~--gK~l~gG~~Pi~av~~~~------~i~~~~~~~~~~~~~~~~~~T~~-gnpl~~aaa~a~Le~i~~~~l 350 (466)
T PRK07036 286 ITF--AKGLTSGYQPLGAVIISE------RLLDVISGPNAKGNVFTHGFTYS-GHPVACAAALKNIEIMEREGL 350 (466)
T ss_pred EEE--ccccccCccccEEEEEcH------HHHHHHhcccCcCcccccCCCCC-CCHHHHHHHHHHHHHHHhCCH
Confidence 766 5998542 455666776 566665421 1 122 223 344556666667777766655
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00016 Score=74.59 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 268 YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 268 l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+++++++|+++|+++|.|+.+ .|+.-.|... ..+. ..|+++++ |.+. |...|.+++++ ++ +.+...
T Consensus 248 l~~lr~lc~~~g~LlI~DEV~-tGfGRtG~~~a~~~~gv~PDivt~g--K~l~gG~Pi~av~~~~------~~-~~~~~~ 317 (459)
T PRK06931 248 LQKIREVTQKHGILLIVDEVQ-AGFARTGKMFAFEHAGIEPDIIVMS--KAVGGGLPLAVLGIKK------EF-DAWQPG 317 (459)
T ss_pred HHHHHHHHHHcCCEEEEecch-hcCCcCchHHHhhhcCCCCCEEEec--ccccCCcceeeeeeHH------HH-hhccCC
Confidence 899999999999999999997 4542223211 1122 46888774 9884 43445566655 33 333222
Q ss_pred cCCCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 344 VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 344 ~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
...++++ .++...++....|+.+.++++.++++
T Consensus 318 ~~~~T~~-gnpla~aaala~L~~l~~~~l~~~~~ 350 (459)
T PRK06931 318 GHTGTFR-GNQLAMATGLTTLKILKEENLAQNAA 350 (459)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 2222333 33444555555777666666544443
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.4e-05 Score=76.15 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCCCCCCcceeecC-CcHHHHHHHHHHh-cc--CCCEEeecCCCCCccccCCccccccccccCcceEEEEe
Q 016668 153 CQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAI-LK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~-sGs~A~~~a~~al-l~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~ 228 (385)
.+..++++.|.+-+ |-... .+|.+-.++.++. .. +.++++++.-.|.-++. +. .-...+..++++.
T Consensus 125 fQtlv~dLTGm~VA----NASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~---Vl---~Tra~~~g~~i~~ 194 (450)
T COG0403 125 FQTLVADLTGLDVA----NASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLD---VL---RTRAEGLGIEIEV 194 (450)
T ss_pred HHHHHHHHhCCCcc----cchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHH---HH---HhhcccCceEEEE
Confidence 46678999999874 33333 3455556665555 32 36899988754433322 10 1112333344444
Q ss_pred ccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CC-CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CC
Q 016668 229 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YP-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC 305 (385)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~-~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-ga 305 (385)
++.+ |.+++++. ....+-.+++.+|+ +| ...|+++|.+++|++|+++++=. ..++-+....|-+ |+
T Consensus 195 ~~~~------d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~a----DplaL~LL~pPGe~GA 263 (450)
T COG0403 195 VDAD------DLDDLESA-DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAA----DPLALGLLKPPGEFGA 263 (450)
T ss_pred eccc------hhhhhhhc-cccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEEe----chhHhhccCCccccCC
Confidence 3332 77777776 44345678888776 46 56689999999999999888632 2222233445666 99
Q ss_pred cEEEECCCcc-----CccccEEEEEEeCC
Q 016668 306 DVVTTTTHKS-----LRGPRGGMIFFKKD 329 (385)
Q Consensus 306 Div~~S~hK~-----l~GprgG~I~~~~~ 329 (385)
||++++++-. |+||..|++.++++
T Consensus 264 DIvvG~~QrfGvPmgfGGPhag~fA~~~~ 292 (450)
T COG0403 264 DIVVGSAQRFGVPMGFGGPHAGYFAVKDE 292 (450)
T ss_pred ceEEecCcccCCCcCCCCcceeeeeEhHh
Confidence 9999999963 68899999999986
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00013 Score=70.70 Aligned_cols=194 Identities=15% Similarity=0.183 Sum_probs=107.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
..|.+++++.++...-+- .++-+| ..+--...+.+.++||-+. .+...+|.+|+..++.-.-
T Consensus 76 chpki~~aLqeq~~kLtl---ssrafY------nd~~~~f~~~vt~lf~~~k-----vlpmnTGaEa~Eta~KLaR~wgy 141 (427)
T KOG1402|consen 76 CHPKIIKALQEQADKLTL---SSRAFY------NDVLGEFAEYVTKLFGYDK-----VLPMNTGAEAVETACKLARKWGY 141 (427)
T ss_pred CCHHHHHHHHHHHhHhhh---hhHHHh------hhhHHHHHHHHHHhcCcce-----eeecccchhHHHHHHHHHHHHHH
Confidence 378999999888764332 122222 1222234567899999986 2345678889998875432
Q ss_pred --c--CCCEEeecCCCCCccccCCccccccccccCcce-------------EEEEeccccCCCCCCCHHHHHHHhhhcCC
Q 016668 190 --K--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-------------FESMPYRLDESTGLVDYDMLEKTAILFRP 252 (385)
Q Consensus 190 --~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-------------~~~i~~~~~~~~~~iD~d~le~~i~~~~p 252 (385)
+ |.|+-.++.-. + .+ ||.-. ..+++.+.. ++.++ .-|.++|+..++..+.
T Consensus 142 ~~K~ip~nka~il~~~-~-nF-hGrT~--~ais~s~d~ds~~~fgp~~P~~~~~v~--------Y~d~eale~~l~~~~v 208 (427)
T KOG1402|consen 142 RKKNIPKNKAKILSAE-N-NF-HGRTL--GAISLSTDPDSWDGFGPFLPGVVDKVP--------YGDAEALEVALKSPNV 208 (427)
T ss_pred hhccCCccceeEEEec-c-cc-cCcee--eeEEecCCcchhhccCCCCCCcceeec--------cCCHHHHHHHhcCCCe
Confidence 2 54543333211 1 11 22210 112222111 12222 2377888988876455
Q ss_pred cEEEEcCCC------CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCccc-CCCC--CCcEEEECCCccCccc--cE
Q 016668 253 KLIIAGASA------YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK--YCDVVTTTTHKSLRGP--RG 321 (385)
Q Consensus 253 klIi~~~s~------~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~-~p~~--gaDiv~~S~hK~l~Gp--rg 321 (385)
..+++.+.- .|.+.=+++.+++|++|+.++|.|+.| .|+--.|.+- ...+ .-|++... |.|.|- .-
T Consensus 209 aaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQ-TGl~RTGk~la~d~env~PDivilg--KalSGG~~Pv 285 (427)
T KOG1402|consen 209 AAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQ-TGLARTGKLLACDYENVRPDIVILG--KALSGGVYPV 285 (427)
T ss_pred eEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhh-hcccccCcEEEeehhhcCCCeEEEe--ccccCCeeee
Confidence 556664321 233334899999999999999999999 5765455321 1122 45877654 877552 23
Q ss_pred EEEEEeCCCCchhHHHHHHhhc
Q 016668 322 GMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~~~ 343 (385)
..+++.+ ++...++..
T Consensus 286 savl~~~------~im~~~~pg 301 (427)
T KOG1402|consen 286 SAVLADD------DIMLNIKPG 301 (427)
T ss_pred EEEEecH------HHHhccCCC
Confidence 3455555 455445433
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-05 Score=78.38 Aligned_cols=192 Identities=21% Similarity=0.238 Sum_probs=125.1
Q ss_pred cCCCCC----cHHHHHHHhhHhhccCCCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 109 ASENFT----SRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 109 asen~~----s~~V~~al~s~l~~~y~~g~p~~r-~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
+|.|+. ++.+.+.....+ .+|.-|.-|-| +|+-.+....+| +++++++|++.+ +...-|-.++.-
T Consensus 100 aS~NfL~l~~~~~ike~a~~~l-rkyGvGsCGPrGFYGt~DvHldlE----~~iakF~G~E~a-----ivYs~gF~ti~S 169 (467)
T KOG1358|consen 100 ASANFLGLIENEEIKEEASFTL-RKYGVGSCGPRGFYGTIDVHLDLE----KRIAKFMGTEDA-----IVYSYGFSTIES 169 (467)
T ss_pred cchhhhhhcccHHHHHHHHHHH-HHhCCCCcCCCcccccceeecccH----HHHHHhhCCcce-----eeeccccchhhh
Confidence 777876 778888777665 46765655544 554333333455 479999999984 456667778888
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc------CCc----
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RPK---- 253 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~------~pk---- 253 (385)
++.++.+.||.|.+.+- .++. .+ +.+.++-- ....+. +.|++++++.+.+. +||
T Consensus 170 ~ipafsKrGDIi~~de~---~nfa--Iq---~GlqlSRS--~i~~Fk------hndm~~lerll~E~~~~~~K~~k~~~~ 233 (467)
T KOG1358|consen 170 AIPAFSKRGDIIFVDEA---VNFA--IQ---KGLQLSRS--TISYFK------HNDMEDLERLLPEQEDEDQKNPKKALT 233 (467)
T ss_pred cchhhhccCcEEEEehh---hhHH--HH---HHHhhhhh--eeEEec------CCCHHHHHHhccCcchhhhhccccccc
Confidence 89999999999988653 2211 00 11111111 122222 45778887665321 122
Q ss_pred --EEEEc--CCCCCCCCCHHHHHHHHHHcCcEEEEecccccccccc-C--c--c-cCCCCCCcEEEECCCccCccccEEE
Q 016668 254 --LIIAG--ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-S--V--V-ADPFKYCDVVTTTTHKSLRGPRGGM 323 (385)
Q Consensus 254 --lIi~~--~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g--~--~-~~p~~gaDiv~~S~hK~l~GprgG~ 323 (385)
.|++. ..++|...++.+|.++..|+...++.|++...|.... | . + ..+.+..|++++|+.-.++ ..||+
T Consensus 234 Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~ala-s~GgF 312 (467)
T KOG1358|consen 234 RRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALA-SGGGF 312 (467)
T ss_pred eEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccc-ccCce
Confidence 34554 3578899999999999999999999999999887653 2 1 1 1233467899999877764 45666
Q ss_pred EEEe
Q 016668 324 IFFK 327 (385)
Q Consensus 324 I~~~ 327 (385)
..++
T Consensus 313 c~G~ 316 (467)
T KOG1358|consen 313 CAGK 316 (467)
T ss_pred eecc
Confidence 6664
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.8e-06 Score=82.69 Aligned_cols=172 Identities=18% Similarity=0.177 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc---cCC----------CEEeecCCCCCccccCCccccc
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---KPH----------DRIMGLDLPHGGHLSHGFMTPK 214 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---~pG----------D~Vl~~~~~~ggh~s~~~~~~~ 214 (385)
..|...-.+..++.|-+.. +-.++..+|+.+|..++.+.- -|+ +-|+..+- .+|.|- .
T Consensus 141 lmE~~vl~km~~ivGw~~~--~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSe--esHYSi-----~ 211 (510)
T KOG0629|consen 141 LMEEEVLAKMREIVGWEEG--GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSE--ESHYSI-----K 211 (510)
T ss_pred eehHHHHHHHHHHhCCCCC--CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecc--cchhhH-----H
Confidence 3454455567777787763 235777889888887765441 122 34444432 355542 1
Q ss_pred cccccCcce-EEEEeccccCCCCCCCHHHHHHHhhhcC-----CcEEEE--cCCCCCCCCCHHHHHHHHHHcCcEEEEec
Q 016668 215 RRVSGTSIY-FESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIA--GASAYPRDFDYPRMRQIADAVGALLMMDM 286 (385)
Q Consensus 215 ~~~~~~g~~-~~~i~~~~~~~~~~iD~d~le~~i~~~~-----pklIi~--~~s~~~~~~dl~~I~~ia~~~ga~livD~ 286 (385)
+...+.|.. ...+.++.+ +.|.+++++||+.+.+.+ |-+|-+ |.+.+|---|++.|+++|++|+.|+++|+
T Consensus 212 kaAa~lg~gtd~c~~v~t~-e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDA 290 (510)
T KOG0629|consen 212 KAAAFLGLGTDHCIKVKTD-ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDA 290 (510)
T ss_pred HHHHHhccCCceeEEeccc-ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeec
Confidence 233445532 123333344 578999999999985533 444433 34456767799999999999999999999
Q ss_pred cccccccccCcccCCC---CCCcEEEECCCccCccc-cEEEEEEeCC
Q 016668 287 AHISGLVAASVVADPF---KYCDVVTTTTHKSLRGP-RGGMIFFKKD 329 (385)
Q Consensus 287 ah~~Gli~~g~~~~p~---~gaDiv~~S~hK~l~Gp-rgG~I~~~~~ 329 (385)
|++-|+.........+ +.+|-++-+.||.+..| +.+.++++.+
T Consensus 291 AwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~ 337 (510)
T KOG0629|consen 291 AWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREE 337 (510)
T ss_pred ccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHH
Confidence 9977776543322233 36889999999998766 5566666554
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0002 Score=73.91 Aligned_cols=125 Identities=12% Similarity=0.082 Sum_probs=69.0
Q ss_pred CHHHHHHHhhhc--CCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--C--CCC-CC
Q 016668 239 DYDMLEKTAILF--RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--D--PFK-YC 305 (385)
Q Consensus 239 D~d~le~~i~~~--~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~--p~~-ga 305 (385)
+++.+++.++.. +...||+.+. ..+...+ +++++++|+++|++||+|+.| .|+.-.|... . .+. ..
T Consensus 237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~-tGfGrtG~~fa~e~~gv~~~P 315 (464)
T TIGR00699 237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQ-TGVGATGKFWAHEHWNLDDPP 315 (464)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeee-eCCCCCcchhHHHhcCCCCCC
Confidence 456677777542 3456777542 1233333 899999999999999999998 5653333211 1 111 37
Q ss_pred cEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 306 DVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 306 Div~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
|++++ .|.+.| ||+++.++ .+.. . ...+.+..-+.++...++..++|+.+.++++.+.+
T Consensus 316 Di~t~--gK~lg~--gG~~~~~~------~~~~-~-~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~ 374 (464)
T TIGR00699 316 DMVTF--SKKFQT--AGYFFHDP------AFRP-N-KPYRQFNTWMGDPSRALILREIIQEIKRKDLLENV 374 (464)
T ss_pred CEEEe--hhhhcc--CCccccch------hccC-C-CCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88665 598731 24443332 1110 0 11112222234555566656678777766654333
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.6e-05 Score=76.56 Aligned_cols=230 Identities=15% Similarity=0.076 Sum_probs=128.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCC------CCcceeecCCcHHHHHHHHHHh-------ccCC-----------CEE
Q 016668 140 YGGNEYIDELETLCQKRALAAFNLDEN------KWGVNVQPLSGSPANFEVYTAI-------LKPH-----------DRI 195 (385)
Q Consensus 140 ~~G~~~~~~le~~~~~~la~lfg~~~~------~~~~~V~~~sGs~A~~~a~~al-------l~pG-----------D~V 195 (385)
...++...+||....+|+.++++++.. .-|.-|...|.|++++.++.+. ++.+ +-|
T Consensus 105 W~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV 184 (511)
T KOG0628|consen 105 WASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLV 184 (511)
T ss_pred eecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhhe
Confidence 335677889999999999999988641 1123455667778877776543 1222 223
Q ss_pred eecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcC-----CcEEEEcCCC-CC-CCCCH
Q 016668 196 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASA-YP-RDFDY 268 (385)
Q Consensus 196 l~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~-----pklIi~~~s~-~~-~~~dl 268 (385)
+..+ -.+|.++. +..-..+.+.+.++ .|. +..++.+.|+++++++. |-.|+.+.-. .. -.-++
T Consensus 185 ~Y~S-----Dqahssve--ka~~i~~VklR~l~--td~-n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l 254 (511)
T KOG0628|consen 185 AYCS-----DQAHSSVE--KACLIAGVKLRALP--TDE-NFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDEL 254 (511)
T ss_pred EEec-----CcccchHH--HhHhhcceeEEEee--ccc-CcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccH
Confidence 3222 12233221 22233444444444 443 67899999999997643 4444443221 22 23469
Q ss_pred HHHHHHHHHcCcEEEEeccccccccc-cCccc---CCCCCCcEEEECCCccCcc-ccEEEEEEeCCCC--------chhH
Q 016668 269 PRMRQIADAVGALLMMDMAHISGLVA-ASVVA---DPFKYCDVVTTTTHKSLRG-PRGGMIFFKKDPV--------LGVE 335 (385)
Q Consensus 269 ~~I~~ia~~~ga~livD~ah~~Gli~-~g~~~---~p~~gaDiv~~S~hK~l~G-prgG~I~~~~~~~--------~~~~ 335 (385)
++|..+|+++|+||++|+|+ +|-.+ -..+. .-++++|-+.+..|||+.. .....++.++... .+|-
T Consensus 255 ~elg~Vc~~~glWLHVDAAY-AGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL 333 (511)
T KOG0628|consen 255 EELGPVCREEGLWLHVDAAY-AGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYL 333 (511)
T ss_pred HHhcchhhhcCEEEEeehhh-ccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhh
Confidence 99999999999999999996 44322 11111 2234788899999999733 3455566666511 1111
Q ss_pred HHHHHhhccCCCccCCChHHHHHHHHH--HHHHhhCchHHHHHHHHh
Q 016668 336 LESAINNAVFPGLQGGPHNHTIGGLAV--CLKHAQSPEFKVYQNKSA 380 (385)
Q Consensus 336 ~~~~i~~~~fp~~qg~p~~~~iaala~--Al~e~~~~~~~~y~~~v~ 380 (385)
-.+......-.....=|....+-+|-+ .++.+-.+.+++|.++-+
T Consensus 334 ~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~ 380 (511)
T KOG0628|consen 334 KHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHV 380 (511)
T ss_pred cchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 112222222111112234444444433 444555566677776654
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00012 Score=72.30 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--C--CcEEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 268 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y--CDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 268 l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--g--aDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
++++.++|+++|.++|.|++| .|+--.| ...-|+ + -|++ |..|.+ .|..-|.+++.+ ++.+.+++
T Consensus 235 lka~~~~v~k~Ggl~IaDEVq-tGfGRtG-~~wgfe~h~v~PDIv--TmAKgiGnG~Pl~AVvtt~------EIa~v~~~ 304 (442)
T KOG1404|consen 235 LKAAYKVVRKRGGLFIADEVQ-TGFGRTG-HMWGFESHGVVPDIV--TMAKGIGNGFPLGAVVTTP------EIADVLNQ 304 (442)
T ss_pred HHHHHHHHHHcCCEEEehhhh-hcccccc-ccccccccCCCccHH--HHHhhccCCCcceeeecCH------HHHHHHHh
Confidence 899999999999999999998 4544344 223344 2 2555 456988 455556677766 68888877
Q ss_pred cc-CCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016668 343 AV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379 (385)
Q Consensus 343 ~~-fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v 379 (385)
.. +..+.|+......++++ .|+-+.++..++++..|
T Consensus 305 ~~~~fnTyggnP~a~avg~a-VL~Vikee~LqE~aa~v 341 (442)
T KOG1404|consen 305 KSSHFNTYGGNPVACAVGLA-VLKVIKEENLQENAAEV 341 (442)
T ss_pred ccccccccCCCchhHHHHHH-HHHHHHHHhHHHHHHHH
Confidence 65 34444444444444444 56666666667777655
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0004 Score=71.13 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=66.5
Q ss_pred HHHHHHHhhh--cCCcEEEEcCC--CCC----CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEE
Q 016668 240 YDMLEKTAIL--FRPKLIIAGAS--AYP----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVV 308 (385)
Q Consensus 240 ~d~le~~i~~--~~pklIi~~~s--~~~----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv 308 (385)
++++++.+.. .++..|++.+. ..+ ....+++|+++|+++|+++|+|+.|. |+...|... ..++ ..|++
T Consensus 205 l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G~GrtG~~~a~~~~gv~PDi~ 283 (431)
T TIGR03251 205 LRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVQPDIV 283 (431)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccchHHHHHhcCCCCCEE
Confidence 4555556642 24556777532 112 22358999999999999999999985 554333211 1123 46888
Q ss_pred EECCCccCccccEEEEEEeCCCCchhHHHHHH-h-hccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 309 TTTTHKSLRGPRGGMIFFKKDPVLGVELESAI-N-NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 309 ~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i-~-~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+. .|.+ |-+|++..++- .++...+ . ......+.+ .++...++..++++.+.++++
T Consensus 284 ~~--gK~~--~~~g~~~~~~i----~~~~~~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~l~~~~l 340 (431)
T TIGR03251 284 AF--GKKT--QVCGIMAGRRV----DEVADNVFAVPSRLNSTWG-GNLVDMVRATRILEIIEEERL 340 (431)
T ss_pred Ee--cccC--ccceEEecchH----HHhhhhcccCccccCCCCC-CCHHHHHHHHHHHHHHHhcCH
Confidence 75 5765 55677655430 0111111 1 011122232 234445555557777665554
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00047 Score=68.56 Aligned_cols=238 Identities=18% Similarity=0.152 Sum_probs=124.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
..|+|.+++...+. +..+...+ ++ -.+ .++ +.+.+.+..+-...+ -..++.|||+||..++....+
T Consensus 73 anpev~ral~~q~~-k~~hs~~~--~~-t~e---av~--l~~~l~~~~~~~~~~--rvff~nsGTeAne~ALK~Ark~~~ 141 (433)
T KOG1401|consen 73 ANPEVARALAEQAK-KLGHSSNG--YF-TLE---AVE--LEEVLSAVLGKGSAE--RVFFCNSGTEANETALKFARKFTG 141 (433)
T ss_pred CCHHHHHHHHHHHh-hheeccCc--cc-cHH---HHH--HHHHHHhcccCCCcc--EEEEecCCcHHHHHHHHHHHHhhc
Confidence 37888888876653 33221111 11 112 222 344555555322211 134567999999999864422
Q ss_pred ---CCC--EEeecCCCCCccccCCccccccccccCcceEEEEeccccCC--C-CCCCHHHHHHHhhhcC--CcEEEEcCC
Q 016668 191 ---PHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--T-GLVDYDMLEKTAILFR--PKLIIAGAS 260 (385)
Q Consensus 191 ---pGD--~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~--~-~~iD~d~le~~i~~~~--pklIi~~~s 260 (385)
|-+ +++...-.|-|+. .+.... ...+..+..++.+ .++ + ..-|..+++++++.++ ...||+.+.
T Consensus 142 ~~~~~~~t~~Iaf~nsyHG~t-lgals~-~~~s~y~~~~~p~----~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPi 215 (433)
T KOG1401|consen 142 KKHPEKKTKFIAFENSYHGRT-LGALSV-TGNSKYGLPFDPI----APDVVTAEYNDSTALEKLFESHKGEIAAVIVEPI 215 (433)
T ss_pred ccCCccceeEEEEecCcCCcc-hhHHHh-hcccccCCCCCCC----CCceeecccCCHHHHHHHHHhCCCceEEEEEecc
Confidence 223 3776653332221 011000 0111112211111 111 1 1357899999998765 345666542
Q ss_pred C-CC-----CCCCHHHHHHHHHHcCcEEEEeccccccccccCc--ccCCCC-CCcEEEECCCccCc-cccEEEEEEeCCC
Q 016668 261 A-YP-----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASV--VADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDP 330 (385)
Q Consensus 261 ~-~~-----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~--~~~p~~-gaDiv~~S~hK~l~-GprgG~I~~~~~~ 330 (385)
. .+ .+.-+..|+++|+++|++||.|+.+. |+.-.|. ....+. .-|+.|.. |-|. |...|...+++
T Consensus 216 qGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~t-G~gR~g~~~a~e~~~~~PDI~t~a--K~L~gGlPigA~~v~~-- 290 (433)
T KOG1401|consen 216 QGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQT-GLGRLGYGWAQEYFGVTPDITTVA--KPLGGGLPIGATGVRD-- 290 (433)
T ss_pred cCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhh-CccccchHHHHHHhCcCCcceeeh--hhccCCceeEEEeehH--
Confidence 1 11 12236788999999999999999974 4322221 112222 34776544 8884 45667777777
Q ss_pred CchhHHHHHHhhccC--CCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 331 VLGVELESAINNAVF--PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 331 ~~~~~~~~~i~~~~f--p~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
++.+.|+..-. .+..=+-+.....+-..+++++.++++.++..
T Consensus 291 ----kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs 335 (433)
T KOG1401|consen 291 ----KVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVS 335 (433)
T ss_pred ----HHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHH
Confidence 58888765432 11111233445555567888999888865543
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.9e-05 Score=77.28 Aligned_cols=192 Identities=16% Similarity=0.153 Sum_probs=107.3
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--cCCCEEeecCCCCCccccCCcccccccccc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSG 219 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~ 219 (385)
|...+-+|-.....-+.+..|+.... .+.+.|...-..+..++.++- ..++.|+.+...| .+ ..+.+..
T Consensus 50 Gss~~~~ltn~l~~d~~~~~G~~~~~-~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridq---kS-----c~kai~~ 120 (389)
T PF05889_consen 50 GSSLLAKLTNSLVLDALRLAGLRSVK-SCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQ---KS-----CFKAIER 120 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHTTHC-EEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEET---HH-----HHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcccc-ceEEEecccccHHHHHHHHHhcccCCceEEEeeccc---cc-----hHHHHHh
Confidence 55444445544444566778987531 134444332235555666663 4577787766533 22 1145667
Q ss_pred CcceEEEEeccccCCCCCCCHHHHHHHhhhcCC--cEEEEcCC--CCCCCCC-HHHHHHHHHHcCcEEEEeccccccccc
Q 016668 220 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRP--KLIIAGAS--AYPRDFD-YPRMRQIADAVGALLMMDMAHISGLVA 294 (385)
Q Consensus 220 ~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~p--klIi~~~s--~~~~~~d-l~~I~~ia~~~ga~livD~ah~~Gli~ 294 (385)
+|..+.+++-...++.-..|.+.+|+.+++..+ .+.++..+ .+|+..| +++|+++|+++|+..++.+|++.--..
T Consensus 121 AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~ 200 (389)
T PF05889_consen 121 AGLEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSK 200 (389)
T ss_dssp TT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HH
T ss_pred cCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHH
Confidence 787776666434433346789999999876443 34444433 3677777 999999999999999999997550000
Q ss_pred -cCcccCCC--CCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhccCCC
Q 016668 295 -ASVVADPF--KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG 347 (385)
Q Consensus 295 -~g~~~~p~--~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~ 347 (385)
-....... ...|+++.|+-|.|--|-||.+++..+. .....+.. .||+
T Consensus 201 ~~~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~----~~i~~vs~-~YpG 251 (389)
T PF05889_consen 201 CMHLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDP----SGILAVSK-EYPG 251 (389)
T ss_dssp HHHHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEESSH----HHHHHHHH-TSHS
T ss_pred HHHHHHHHHhcCCcceeeeecCCCEEecCCCcEEEecCH----HHHHHHHH-Hhhh
Confidence 00000011 1468999999999988888655554441 45555543 3444
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00086 Score=68.98 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=51.0
Q ss_pred HHHHHHHhhh--cCCcEEEEcCC--CCC----CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEE
Q 016668 240 YDMLEKTAIL--FRPKLIIAGAS--AYP----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVV 308 (385)
Q Consensus 240 ~d~le~~i~~--~~pklIi~~~s--~~~----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv 308 (385)
++++++.+.. .++..||+.+. ..+ ....+++|+++|+++|+++|.|+.+. |+.-.|... .-++ ..|++
T Consensus 212 ~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-GfGRtG~~~a~~~~gv~PDiv 290 (443)
T PRK08297 212 LAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQT-GVGLTGTAWAYQQLGVRPDIV 290 (443)
T ss_pred HHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-ccCccchHHHHHhcCCCCCEE
Confidence 4556666653 24567777532 112 22358999999999999999999984 542233211 1122 46888
Q ss_pred EECCCccCccccEEEEEEe
Q 016668 309 TTTTHKSLRGPRGGMIFFK 327 (385)
Q Consensus 309 ~~S~hK~l~GprgG~I~~~ 327 (385)
++ .|.+ |-+|++.++
T Consensus 291 ~~--gK~l--~~~a~l~~~ 305 (443)
T PRK08297 291 AF--GKKT--QVCGIMAGR 305 (443)
T ss_pred Ee--cccc--cccceecch
Confidence 64 6987 345666544
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0017 Score=71.43 Aligned_cols=122 Identities=16% Similarity=0.094 Sum_probs=70.9
Q ss_pred HHHHHHhhh-------cCCcEEEEcCC--C-CCCC----CCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-
Q 016668 241 DMLEKTAIL-------FRPKLIIAGAS--A-YPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK- 303 (385)
Q Consensus 241 d~le~~i~~-------~~pklIi~~~s--~-~~~~----~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~- 303 (385)
+.+++.++. .+...||+.+. . .+.. .-+++++++|+++|++||.|+.+ .|+.-.|... .-+.
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~-TGfGRtG~~fa~e~~gv 645 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVF-TGLWRLGVESAWELLGC 645 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecc-cCCCcccchhhHHhcCC
Confidence 556666642 23456676652 1 2322 22799999999999999999997 5653233211 1122
Q ss_pred CCcEEEECCCccCccc--cEEEEEEeCCCCchhHHHHHHhh-----ccCCCccCCChHHHHHHHHHHHHHhhCch
Q 016668 304 YCDVVTTTTHKSLRGP--RGGMIFFKKDPVLGVELESAINN-----AVFPGLQGGPHNHTIGGLAVCLKHAQSPE 371 (385)
Q Consensus 304 gaDiv~~S~hK~l~Gp--rgG~I~~~~~~~~~~~~~~~i~~-----~~fp~~qg~p~~~~iaala~Al~e~~~~~ 371 (385)
..|+++++ |.|.|- ..|.+++++ ++.+.+.. ..+.+..=+-|+-..|+-..+|+.+.+++
T Consensus 646 ~PDIi~~g--KgLtgG~~Plaa~l~~~------~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~ 712 (817)
T PLN02974 646 KPDIACYA--KLLTGGLVPLAATLATE------EVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPS 712 (817)
T ss_pred CCCEEeec--ccccCCCCccEEEEEcH------HHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHccc
Confidence 45888876 988542 456666666 56665531 11222222334455555556787777763
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00046 Score=67.85 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=128.2
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCC-CCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~-~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
.+.-+.+...+++|++.....+.+-..-|..- .+.+.+-++...+ ..+++.++++|+++.+ +.+.+...++|.+...
T Consensus 7 ~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~-~~a~~~lreLl~iPd~-Y~VlflqGGat~qf~~ 84 (365)
T COG1932 7 YNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVL-EEAEKDLRELLNIPDD-YKVLFLQGGATGQFAM 84 (365)
T ss_pred CCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHH-HHHHHHHHHHhCCCCC-ceEEEEcCccHHHHHH
Confidence 34456777788999988887776544333321 1222233333334 4478889999999874 5454444555668888
Q ss_pred HHHHhccCCCE--EeecCCCCCccccCCccccccccccCcceEEEEecc-ccC-CCCCCCHHHHHHHhhhcCCcEEEEc-
Q 016668 184 VYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR-LDE-STGLVDYDMLEKTAILFRPKLIIAG- 258 (385)
Q Consensus 184 a~~all~pGD~--Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~-~~~-~~~~iD~d~le~~i~~~~pklIi~~- 258 (385)
+.+.|+.++.. |.. |+.+.- ..+.++..+......... ... -...+|++..+ +.+ +...|..+
T Consensus 85 ~p~nLl~~~~~~yv~~------g~Ws~~---a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~-~~ayv~~~~ 152 (365)
T COG1932 85 APMNLLGKRGTDYVDT------GAWSEF---AIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD-NDAYVHFCW 152 (365)
T ss_pred HHHhhhcccCceeEee------eehhHh---HHHHHHHhcccccccccceeccCccCCCChhhcc--cCC-CccEEEEec
Confidence 88898866543 432 222211 001222222111111111 111 12245555443 211 22234433
Q ss_pred -CCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCCchhHH
Q 016668 259 -ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVEL 336 (385)
Q Consensus 259 -~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~ 336 (385)
.+..|..++ ..-.+.. +.++++|++- ++.. .+-++..-|+++++.+|.+ ||.| ++++.++ ++
T Consensus 153 NeTi~Gv~v~--~~p~~~~--~~~~v~D~SS--~ils---r~iDvsk~dviyagaQKnl-GpaGltvvIvr~------~~ 216 (365)
T COG1932 153 NETISGVEVP--ELPDIGS--DGLLVADASS--AILS---RPIDVSKYDVIYAGAQKNL-GPAGLTVVIVRP------DL 216 (365)
T ss_pred CCcccceEcc--CCCCCCC--CceEEEeccc--HHhc---CCCChhHcceEEEehhhcc-CccceEEEEEcH------HH
Confidence 233343222 1111222 2899999974 3321 1223336799999999997 6777 7777777 45
Q ss_pred HHHHhhccCCC------------ccCCChHHHHHHHHHHHHHhhCchH
Q 016668 337 ESAINNAVFPG------------LQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 337 ~~~i~~~~fp~------------~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
.+++.....|. +..+|....+.-+..+++-++..+.
T Consensus 217 l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GG 264 (365)
T COG1932 217 LERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGG 264 (365)
T ss_pred HhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCC
Confidence 55554431222 3457888888888888888877655
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0039 Score=63.64 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=55.2
Q ss_pred HHHHHHHhhhcCCc---EEEEcCCC---CCCC----CCHHHHHHHHHHcCcEEEEeccccccccccCccc-C-CCC-CCc
Q 016668 240 YDMLEKTAILFRPK---LIIAGASA---YPRD----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVA-D-PFK-YCD 306 (385)
Q Consensus 240 ~d~le~~i~~~~pk---lIi~~~s~---~~~~----~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~-~-p~~-gaD 306 (385)
.++||+++.++.|. .+|+.+-. .+.. .=++++++||++||++||.|+. ..|+--.|... . -.. --|
T Consensus 200 a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV-~tGFGRTG~~FA~e~~gi~PD 278 (449)
T COG0161 200 ADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEV-ATGFGRTGKMFACEHAGIVPD 278 (449)
T ss_pred HHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecc-eeCCCcCchhhhhhhcCCCCC
Confidence 67788888776543 44554321 2222 2289999999999999999997 35543333211 1 011 247
Q ss_pred EEEECCCccCcc---ccEEEEEEeCCCCchhHHHHHHhh
Q 016668 307 VVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 307 iv~~S~hK~l~G---prgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+++.+ |.|.| |-++ +++.+ ++.+.+..
T Consensus 279 i~~~a--KGLT~GY~Pl~a-~l~~~------~I~~~~~~ 308 (449)
T COG0161 279 ILCLA--KGLTGGYLPLSA-VLTSD------RIYEAFSD 308 (449)
T ss_pred eeeec--ccccccchhhHh-HhhhH------HHHHHHhc
Confidence 77765 98854 3344 44444 46665543
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0036 Score=62.25 Aligned_cols=208 Identities=17% Similarity=0.113 Sum_probs=100.3
Q ss_pred hhhccccccCCCCCcHHHHHHHhhHhhccCCCCC-----CCCCCC-CCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeec
Q 016668 101 QFKSLELIASENFTSRAVMEAVGSCLTNKYSEGL-----PGKRYY-GGNEYIDELETLCQKRALAAFNLDENKWGVNVQP 174 (385)
Q Consensus 101 ~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~-----p~~r~~-~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~ 174 (385)
+.++|+|-=+---++++-++. +..|..-..+.+ ..-|.| +|.+-+-+ +++..++++|++.+ +|+.
T Consensus 21 ka~~L~LdmtRGKPs~eQLdL-S~~lL~~~~~~~~~~dG~D~RNY~G~l~Gipe----~r~l~a~llgv~~~----~viv 91 (425)
T PF12897_consen 21 KAKGLKLDMTRGKPSPEQLDL-SNPLLDLPGSSDYLADGTDCRNYPGGLDGIPE----ARELFAELLGVPPE----NVIV 91 (425)
T ss_dssp HHTT--EES---S--HHHHHG-GGGGGGSSTTCCBECTTEBTTSS-S-SS--HH----HHHHHHHHHTS-GG----GEEE
T ss_pred HHcCCCcccCCCCCCHHHHhh-hHHHhcCCCCccccCCCccccCCCCccCChHH----HHHHHHHHhCCCHH----HEEE
Confidence 336777765666666666664 333332221111 123778 66664444 45568899999985 4544
Q ss_pred CCcHH--HHHHHH-HHh----cc------CCC--EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCC
Q 016668 175 LSGSP--ANFEVY-TAI----LK------PHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD 239 (385)
Q Consensus 175 ~sGs~--A~~~a~-~al----l~------pGD--~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD 239 (385)
.+.|. -++-++ .++ .. ..+ +.|++.|-|.-|++ .....|.+ .++++.++ .-+|
T Consensus 92 ~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFa--------i~E~~Gie--mi~VpM~~--dGPD 159 (425)
T PF12897_consen 92 GGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFA--------ITEHFGIE--MIPVPMTE--DGPD 159 (425)
T ss_dssp -SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHH--------HHHHCT-E--EEEEEEET--TEE-
T ss_pred eccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHH--------HHHhhCcE--EEecCCCC--CCCC
Confidence 43332 222121 222 11 122 56888876555543 34566764 44444552 3489
Q ss_pred HHHHHHHhhh-cCCcEEEEcCC-CCC--CCCCHHHHHHHH----HHcCcEEEEeccccccccccCc-cc---CCCC----
Q 016668 240 YDMLEKTAIL-FRPKLIIAGAS-AYP--RDFDYPRMRQIA----DAVGALLMMDMAHISGLVAASV-VA---DPFK---- 303 (385)
Q Consensus 240 ~d~le~~i~~-~~pklIi~~~s-~~~--~~~dl~~I~~ia----~~~ga~livD~ah~~Gli~~g~-~~---~p~~---- 303 (385)
+|.+|+++.+ ...|-||+-+. +|| ....=+.++++| ...+..++.|+|+......... .. +.++
T Consensus 160 mD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~ 239 (425)
T PF12897_consen 160 MDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAK 239 (425)
T ss_dssp HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHH
T ss_pred HHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHH
Confidence 9999999854 34588887532 234 233333444444 3469999999998876653221 11 2222
Q ss_pred --CCc--EEEECCCcc-CccccEEEEEEeCC
Q 016668 304 --YCD--VVTTTTHKS-LRGPRGGMIFFKKD 329 (385)
Q Consensus 304 --gaD--iv~~S~hK~-l~GprgG~I~~~~~ 329 (385)
..| +++.||+|. |+|-..+++.+.++
T Consensus 240 AGnpdrv~~F~STSKITf~GaGva~~aaS~~ 270 (425)
T PF12897_consen 240 AGNPDRVYVFASTSKITFPGAGVAFFAASEA 270 (425)
T ss_dssp TT-TTSEEEEEESTTTS-TTSS-EEEEE-HH
T ss_pred cCCCCeEEEEecccccccCCcceeeeecCHH
Confidence 345 678999995 67777788888775
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0028 Score=70.01 Aligned_cols=150 Identities=20% Similarity=0.152 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCCCCCCcceeecC-CcHHHHHHHHHHh-cc--CCCEEeecCCCCCccccCCccccccccccCcceEEEEe
Q 016668 153 CQKRALAAFNLDENKWGVNVQPL-SGSPANFEVYTAI-LK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~-sGs~A~~~a~~al-l~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~ 228 (385)
.+..++++.|.+-. |-... .+|.+-.+++++. .. +..+|++.+-.|..+.. +. ...+...|. +++.
T Consensus 129 ~Qtmi~~LtGm~va----NASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~---v~-~t~~~~~g~--~i~~ 198 (954)
T PRK12566 129 FQQMTIDLTGLDLA----NASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLS---VL-RTRAEGFGF--ELVV 198 (954)
T ss_pred HHHHHHHHhCchhh----hhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHH---HH-HHhhhcCCc--EEEE
Confidence 56788999999863 22222 3444444444444 22 25688887644322111 00 001122333 3322
Q ss_pred ccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCc
Q 016668 229 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD 306 (385)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaD 306 (385)
+++++.+.. +.-.|++.+|+ +|...|+++|.+++|+.|++++ +.+. +.+-+....|-+ |+|
T Consensus 199 ------------~~~~~~~~~-~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~-~~~d---~laL~ll~~Pge~GAD 261 (954)
T PRK12566 199 ------------DAVDNLAAH-AVFGALLQYPDTHGEIRDLRPLIDQLHGQQALAC-VAAD---LLSLLVLTPPGELGAD 261 (954)
T ss_pred ------------cchhhcCCC-CEEEEEEECCCCceEEccHHHHHHHHHHcCCEEE-EEeC---HHHHhCCCChhhcCCc
Confidence 233333322 35566676665 5777899999999999999866 4433 223234456667 999
Q ss_pred EEEECCC-----ccCccccEEEEEEeCC
Q 016668 307 VVTTTTH-----KSLRGPRGGMIFFKKD 329 (385)
Q Consensus 307 iv~~S~h-----K~l~GprgG~I~~~~~ 329 (385)
|++++.+ =.++||..|++.++++
T Consensus 262 I~vG~~Q~fGvp~~~GGP~ag~~a~~~~ 289 (954)
T PRK12566 262 VVLGSTQRFGVPMGYGGPHAAYFACRDD 289 (954)
T ss_pred EEeeCCCcCCCCCCCCCCCeeeeeehHH
Confidence 9987665 3358899999999885
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0036 Score=60.20 Aligned_cols=254 Identities=19% Similarity=0.217 Sum_probs=135.1
Q ss_pred hhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 102 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 102 ~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
.++|+.++--.-..|.|.+|....+.-- ....|+. .|+|-+-++.....+-+++ +..++.|||+||
T Consensus 50 LDCInNVaHvghchp~VV~A~~kQmat~----~tN~RFl-----hd~lv~cA~~l~stlPeLs-----vc~F~NSGSEAN 115 (452)
T KOG1403|consen 50 LDCINNVAHVGHCHPEVVRAGAKQMATI----STNNRFL-----HDELVQCARTLTSTLPELS-----VCFFVNSGSEAN 115 (452)
T ss_pred HHHhhhhhhcccCCHHHHHHHHHHHhHh----cccchhh-----HHHHHHHHHHHhhcCCCce-----EEEEecCCchhh
Confidence 3788887777778899999877665421 2223332 3566653333333333433 567789999999
Q ss_pred HHHHHHh--ccCCCEEeecCCCCCccccCCc-ccccccccc-----CcceEEEEeccc------------cCCCCCCCHH
Q 016668 182 FEVYTAI--LKPHDRIMGLDLPHGGHLSHGF-MTPKRRVSG-----TSIYFESMPYRL------------DESTGLVDYD 241 (385)
Q Consensus 182 ~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~-~~~~~~~~~-----~g~~~~~i~~~~------------~~~~~~iD~d 241 (385)
-.++.-. ..+...+++++..|-||++.-. +.+. +... ..-++.+.|.+- +.+.+..--|
T Consensus 116 DLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPY-KF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad 194 (452)
T KOG1403|consen 116 DLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPY-KFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYAD 194 (452)
T ss_pred HHHHHHHHhhcccCceEEEechhccceeeeeeccce-eccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhh
Confidence 9988654 3344445566666667765210 0000 0000 001122222210 0001111224
Q ss_pred HHHHHhhhc--CCcEE---EE------cCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----CCc
Q 016668 242 MLEKTAILF--RPKLI---IA------GASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCD 306 (385)
Q Consensus 242 ~le~~i~~~--~pklI---i~------~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~----gaD 306 (385)
.+++.+++. +-.-| +. +...-|-..-++.+++-.+.+|-+.|.|+.| .|+.--|.....++ -.|
T Consensus 195 ~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQ-vGFGRvG~hyWafq~y~fiPD 273 (452)
T KOG1403|consen 195 PVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQ-VGFGRVGSHYWAFQTYNFIPD 273 (452)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhh-hcccccchhhhhhhhhccccc
Confidence 455555321 11111 21 1111121222678888889999999999998 34322233334444 246
Q ss_pred EEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhhc--cCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHh
Q 016668 307 VVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSA 380 (385)
Q Consensus 307 iv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~~--~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~ 380 (385)
|++.. |.+ .|...+.+++.+ ++.+.+... -+..+.||....-.++++ -++.+..+..++.++||=
T Consensus 274 IVtmg--KpmGNGhPVa~Vattk------eIA~Af~atgv~YFNTyGGnPVsCAv~la-Vm~v~e~E~Lq~ha~~vG 341 (452)
T KOG1403|consen 274 IVTMG--KPMGNGHPVAAVATTK------EIAQAFHATGVEYFNTYGGNPVSCAVGLA-VMRVCEDENLQEHAQQVG 341 (452)
T ss_pred hheec--ccCCCCCeeeEEeccH------HHHHHhccccceehhccCCCchhHHHHHH-HHHHHhhhhHHHHHHHHH
Confidence 76654 776 567778888888 577766541 233345554444444444 455677777787777763
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0034 Score=61.39 Aligned_cols=150 Identities=20% Similarity=0.253 Sum_probs=97.6
Q ss_pred ceeecCCcHHHH--HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHh
Q 016668 170 VNVQPLSGSPAN--FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA 247 (385)
Q Consensus 170 ~~V~~~sGs~A~--~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i 247 (385)
+.||+.|||.|+ .+-|.+..-|+..|.+++|+.|-|.- .-..+|..++...| .++.+..+|++-+-+.+
T Consensus 122 ~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~--------if~~ag~~~~~yrY-yd~~t~gld~~g~ledl 192 (427)
T KOG1411|consen 122 VTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKN--------IFKDAGLPVKFYRY-YDPKTRGLDFKGMLEDL 192 (427)
T ss_pred eEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCc--------cccccCcceeeeee-ccccccccchHHHHHHH
Confidence 568889988644 44455656789999999999877632 22456665555554 35567889998877666
Q ss_pred hhcCCc-EEEEc-CCCCCC-----CCCHHHHHHHHHHcCcEEEEeccccccccccCcccCC------CC-CCc-EEEECC
Q 016668 248 ILFRPK-LIIAG-ASAYPR-----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP------FK-YCD-VVTTTT 312 (385)
Q Consensus 248 ~~~~pk-lIi~~-~s~~~~-----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p------~~-gaD-iv~~S~ 312 (385)
.+.-.. .|++. .-++|+ ...+++|.++.++.+.+-+.|+++ -|+-.++..... ++ |-+ +++.|+
T Consensus 193 ~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAY-QGfaSG~~d~DA~avR~F~~~g~~~~laQSy 271 (427)
T KOG1411|consen 193 GEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAY-QGFASGDLDKDAQAVRLFVEDGHEILLAQSY 271 (427)
T ss_pred hcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhh-cccccCCchhhHHHHHHHHHcCCceEeehhh
Confidence 553223 34432 234443 345899999999999999999985 555433221111 11 445 578899
Q ss_pred CccC--ccccEEE--EEEeCC
Q 016668 313 HKSL--RGPRGGM--IFFKKD 329 (385)
Q Consensus 313 hK~l--~GprgG~--I~~~~~ 329 (385)
-|++ .|-|.|. |+|++.
T Consensus 272 AKNMGLYgERvGa~svvc~~a 292 (427)
T KOG1411|consen 272 AKNMGLYGERVGALSVVCKDA 292 (427)
T ss_pred hhhcchhhhccceeEEEecCH
Confidence 9996 6777664 466665
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0015 Score=57.44 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcC--CCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCC
Q 016668 148 ELETLCQKRALAAFN--LDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHG 203 (385)
Q Consensus 148 ~le~~~~~~la~lfg--~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~g 203 (385)
++++++++++.+.+| ++. ++ -+|..++|+ .|+..++.+|++|||.|++++|.|.
T Consensus 96 ~lR~AiA~~l~~~~g~~v~~-~p-d~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 96 NFRKAIANFMAEARGGRVKF-DA-DMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA 152 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcc-ch-hheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 788888899999988 332 11 246666665 5999999999999999999998654
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0039 Score=60.21 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=89.9
Q ss_pred eeecCCcHHHHHHHHHHh--ccCCCEEeecCCCCCccccCCccccccccccCc-ceEEEEeccccCCCCCCCHHHHHHHh
Q 016668 171 NVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-IYFESMPYRLDESTGLVDYDMLEKTA 247 (385)
Q Consensus 171 ~V~~~sGs~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-~~~~~i~~~~~~~~~~iD~d~le~~i 247 (385)
.||..|||.|+.....=| .=+...|.+.+|+.+.|-. ....+| ..+...+| +|.++..+|++.+-..+
T Consensus 102 ~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~--------if~~aGf~tv~~Y~y-Wd~~~k~~d~e~~Lsdl 172 (410)
T KOG1412|consen 102 GVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHA--------IFEKAGFTTVATYPY-WDAENKCVDLEGFLSDL 172 (410)
T ss_pred ceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHH--------HHHHcCCceeeeeee-ecCCCceecHHHHHHHH
Confidence 578899998887654322 2245568888888776632 112344 22344444 45566789999988887
Q ss_pred hhcCCcEE-EEc-CCCCCCCC-----CHHHHHHHHHHcCcEEEEeccccccccccCcccCC------CC-CCc-EEEECC
Q 016668 248 ILFRPKLI-IAG-ASAYPRDF-----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP------FK-YCD-VVTTTT 312 (385)
Q Consensus 248 ~~~~pklI-i~~-~s~~~~~~-----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p------~~-gaD-iv~~S~ 312 (385)
+.-..+-| ++. ..++|+-+ .+..|++..++.+.+.+.|.|+ =|+-.++.-.+. ++ +.. +++.||
T Consensus 173 ~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAY-QGfASGD~~~DawAiR~fV~~g~e~fv~QSF 251 (410)
T KOG1412|consen 173 ESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAY-QGFASGDLDADAWAIRYFVEQGFELFVCQSF 251 (410)
T ss_pred hhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhh-cccccCCccccHHHHHHHHhcCCeEEEEhhh
Confidence 65333433 332 23455433 3788999999999999999985 565433321111 12 433 688999
Q ss_pred CccC--ccccEEEE
Q 016668 313 HKSL--RGPRGGMI 324 (385)
Q Consensus 313 hK~l--~GprgG~I 324 (385)
.|.| .++|-|.+
T Consensus 252 aKNfGlYneRvGnl 265 (410)
T KOG1412|consen 252 AKNFGLYNERVGNL 265 (410)
T ss_pred hhhcccccccccce
Confidence 9996 77887643
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.015 Score=57.11 Aligned_cols=119 Identities=18% Similarity=0.284 Sum_probs=67.3
Q ss_pred HHHHHHHhhhcC----C-cEEEEcCC------CCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCccc----CCCC-
Q 016668 240 YDMLEKTAILFR----P-KLIIAGAS------AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA----DPFK- 303 (385)
Q Consensus 240 ~d~le~~i~~~~----p-klIi~~~s------~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~----~p~~- 303 (385)
++++|+++...+ | ..||+.+. +.....-+..+++|+++||+.+|+|+.|+ |...+|.+- ..++
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQT-GgGaTGk~WaHehw~l~~ 333 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQT-GGGATGKFWAHEHWNLDS 333 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeec-CCCccCceeeehhcCCCC
Confidence 567777775433 3 34566432 22233348999999999999999999995 333444321 2233
Q ss_pred CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 304 YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 304 gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
-.|+||+| |-|. .|| .+.+.+ ++..-.+..|..-.|.|.-..+. ...++++.+++.
T Consensus 334 PpD~vTFS--KK~q--~gG-ffh~~~------frpn~pYrifNTWmGdP~k~lll--~~vv~~I~~~~L 389 (484)
T KOG1405|consen 334 PPDVVTFS--KKFQ--TGG-FFHDEE------FRPNEPYRIFNTWMGDPSKNLLL--EEVVQEIKREDL 389 (484)
T ss_pred Cccceehh--hhhh--cCc-cccCcc------cCCCchHHHhhhhcCChHHHHHH--HHHHHHHhHHHH
Confidence 46888776 5442 335 333443 33322333455556666554443 445555655544
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.036 Score=53.63 Aligned_cols=202 Identities=18% Similarity=0.190 Sum_probs=113.4
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHHHHHHH-HHHhccCCC---EEeecCCCCCccccCCccccccccccCcceEEEEe
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEV-YTAILKPHD---RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a-~~all~pGD---~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~ 228 (385)
+-..++.+.|++.. +|...+.-++|... +.++-+|-. +|+. +.++.+|-.|. ....+.+.|..++-..
T Consensus 116 il~l~~~iVGA~e~----EvavmNsLTvNlh~Ll~sFyKPTekR~KILl---E~kaFPSDhYA-iesQ~~lhG~~~e~sm 187 (465)
T KOG3846|consen 116 ILPLLAPIVGAQEN----EVAVMNSLTVNLHSLLISFYKPTEKRFKILL---EKKAFPSDHYA-IESQCKLHGISPENSM 187 (465)
T ss_pred hhhhhhhhccCCch----hhhhHhhhhhHHHHHHHHhcCCcchhhhhhh---ccCCCCchHHH-HHhhhhhcCCChHHhe
Confidence 44567889999875 34444444555554 456777754 4553 33444442221 1113344454332222
Q ss_pred ccccCCCC--CCCHHHHHHHhhhcCC--cEEEEcCCC--CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC
Q 016668 229 YRLDESTG--LVDYDMLEKTAILFRP--KLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF 302 (385)
Q Consensus 229 ~~~~~~~~--~iD~d~le~~i~~~~p--klIi~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~ 302 (385)
..+.+..| .+..+++-+.++...- .+|+++... ++.-.|+.+|.+.-+..|+++=.|-||+.|-+ |--+
T Consensus 188 ~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNV-----pL~L 262 (465)
T KOG3846|consen 188 IQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNV-----PLQL 262 (465)
T ss_pred EEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCC-----ceEE
Confidence 22333333 5777777777765433 344444333 36678999999776777999999999987743 1111
Q ss_pred -C-CCcEEEECCCccC-ccccE-EEEEEeCCCC----------chhHHHHHHhh-cc---CCC----ccCCChHHHHHHH
Q 016668 303 -K-YCDVVTTTTHKSL-RGPRG-GMIFFKKDPV----------LGVELESAINN-AV---FPG----LQGGPHNHTIGGL 360 (385)
Q Consensus 303 -~-gaDiv~~S~hK~l-~Gprg-G~I~~~~~~~----------~~~~~~~~i~~-~~---fp~----~qg~p~~~~iaal 360 (385)
+ ++|+.+--..|.+ +|+-| |.++...+.- +..+..+++.. .+ -|| -+++|..+..+|+
T Consensus 263 HdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al 342 (465)
T KOG3846|consen 263 HDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVAL 342 (465)
T ss_pred eecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHH
Confidence 2 8899888889988 55544 4455544310 00112222111 11 122 2568999999998
Q ss_pred HHHHHHh
Q 016668 361 AVCLKHA 367 (385)
Q Consensus 361 a~Al~e~ 367 (385)
...|+..
T Consensus 343 ~~SLe~F 349 (465)
T KOG3846|consen 343 RSSLELF 349 (465)
T ss_pred HhhHHHH
Confidence 8887643
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.19 Score=53.10 Aligned_cols=151 Identities=13% Similarity=0.166 Sum_probs=84.2
Q ss_pred HHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
+..++++.|++-+. + -+.--||.|-.+..++. .+++.++++..-.|.-.++ +. .-+..+..+++.
T Consensus 169 QTmi~dlTGL~~aN--A-SLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtls---V~---~TRa~~~~i~v~----- 234 (1001)
T KOG2040|consen 169 QTMITDLTGLPMAN--A-SLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLS---VV---KTRAKGFGIKVV----- 234 (1001)
T ss_pred HHhhhhccCCcccc--h-hhhccchhHHHHHHHHHhhcccceEEecCCCCcchhh---hh---hccccccceeEE-----
Confidence 45567888887642 1 12345787666665554 5666777765543322221 10 001111111111
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEE
Q 016668 233 ESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTT 310 (385)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~ 310 (385)
..|..+...-.+ ..--|++.++. .+...|++++++.|++.|..+++- ..|.+--....|-+ |+||+++
T Consensus 235 ----~~~~~~~~~s~~--~v~gvlvQYP~t~G~i~d~~el~~~a~~~~s~vv~a----tDLLaLtiLrpPgefGaDIavG 304 (1001)
T KOG2040|consen 235 ----VSDIKEADYSSK--DVSGVLVQYPDTEGSVLDFDELVELAHANGSLVVMA----TDLLALTILRPPGEFGADIAVG 304 (1001)
T ss_pred ----ecCHHHhhcccc--ceeEEEEEcCCCCCcccCHHHHHHHhhccCceEEEe----ehhhHHHccCChhhcCceeeec
Confidence 233333322221 23456666665 478899999999999999887652 22222112334556 9999999
Q ss_pred CCCcc-----CccccEEEEEEeC
Q 016668 311 TTHKS-----LRGPRGGMIFFKK 328 (385)
Q Consensus 311 S~hK~-----l~GprgG~I~~~~ 328 (385)
|.+.. ++||..||+.+++
T Consensus 305 SsQRFGVPlGYGGPHAaFfAv~~ 327 (1001)
T KOG2040|consen 305 SSQRFGVPLGYGGPHAAFFAVSE 327 (1001)
T ss_pred cccccCccccCCCchHHHHHHHH
Confidence 99974 3677777766554
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.5 Score=42.33 Aligned_cols=200 Identities=17% Similarity=0.214 Sum_probs=103.1
Q ss_pred ccccccCCCCCcHHHHHHHhhHhhccCCCCCCC-CCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHH
Q 016668 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (385)
Q Consensus 104 ~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~-~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~ 182 (385)
-++.-+.+.-+|..|+..+.+++.|-..-|..- ...+.+.++...++ .+...+++++++++. +.+.....+||....
T Consensus 8 vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~-~tes~lreLlniPdn-~~vlf~QGGGt~qFa 85 (370)
T KOG2790|consen 8 VVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIIN-DTESLLRELLNIPDN-YKVLFLQGGGTGQFA 85 (370)
T ss_pred eeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHH-HHHHHHHHHHcCCCc-eeEEEEeCCCccccc
Confidence 356667788888999998888887654333211 01111223333333 356678999999873 434444456676555
Q ss_pred HHHHHhc--cCCC---EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC--CCCCHHHHHHHhhhcCCcEE
Q 016668 183 EVYTAIL--KPHD---RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST--GLVDYDMLEKTAILFRPKLI 255 (385)
Q Consensus 183 ~a~~all--~pGD---~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~--~~iD~d~le~~i~~~~pklI 255 (385)
++...|. +.|+ -|++ |-.+- -..+.+...|. +..+..+..+.+ ..+|.+..+.. .+.+.+
T Consensus 86 Av~lNL~glK~g~~AdYiVT------GsWS~---KA~~EAkk~~~-~~~V~~~~k~y~ygkvPd~~~w~~~---~da~yv 152 (370)
T KOG2790|consen 86 AVPLNLIGLKHGRCADYVVT------GSWSA---KAAEEAKKYGT-PNIVIPKLKSYTYGKVPDPSTWELN---PDASYV 152 (370)
T ss_pred ccchhhhccccCCccceEEe------ccccH---HHHHHHHhhCC-ceEEeccccccccCcCCChhhcccC---CCccEE
Confidence 5555553 5553 3332 11110 00011112222 112222222223 25666554421 133566
Q ss_pred EEcCC--CCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCC
Q 016668 256 IAGAS--AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 256 i~~~s--~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~ 329 (385)
..+.. .-+..+|.-. +-.-.|++++.|++. .+. ..|++ .-++++...+|+. ||-| .+++.+++
T Consensus 153 yyCaNETVHGVEf~~~P---~~~~~~~vlVaDmSS--nfl-----SrpvDvsk~gvi~aGAQKN~-G~aG~Tvvivr~d 220 (370)
T KOG2790|consen 153 YYCANETVHGVEFDFIP---VNDPKGAVLVADMSS--NFL-----SRPVDVSKFGVIFAGAQKNV-GPAGVTVVIVRKD 220 (370)
T ss_pred EEecCceeeceecCCCC---CCCCCCceEEEeccc--chh-----cCCccchhcceEEecccccc-CccccEEEEEehh
Confidence 55433 2232222111 123469999999973 322 24555 4568889999986 6777 56667775
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.3 Score=46.55 Aligned_cols=185 Identities=18% Similarity=0.194 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--cCCCEEee-cCCCCCccccCCccccccccccCcceEEEEec
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KPHDRIMG-LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY 229 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--~pGD~Vl~-~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~ 229 (385)
....+..+.|+..- -.+.|.|...-..+..++.++- +|.-+-++ +..+.-+-+ +.+.-+|.+..++.-
T Consensus 62 ~a~~~i~l~glhav-~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~--------ksi~~agfepiiie~ 132 (432)
T KOG3843|consen 62 FAKDAIHLAGLHAV-ANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCF--------KSIIHAGFEPIIIEN 132 (432)
T ss_pred HHHHHHHHhhhhhh-hceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHH--------HHHHhcCCCceeeec
Confidence 33445566676531 1134545432235566677773 45444333 322211100 112223432222221
Q ss_pred cccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC----CCC-CCCHHHHHHHHHHcCcEEEEeccccccccccCc---ccCC
Q 016668 230 RLDESTGLVDYDMLEKTAILFRPKLIIAGASA----YPR-DFDYPRMRQIADAVGALLMMDMAHISGLVAASV---VADP 301 (385)
Q Consensus 230 ~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~----~~~-~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~---~~~p 301 (385)
-++.+.-.-|++.+++.+++..+..|++-.+. -|+ +.++++|..||..|++.-++.++++ +-.... ....
T Consensus 133 i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayg--lqsee~i~~iaa~ 210 (432)
T KOG3843|consen 133 ILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYG--LQSEECIHKIAAA 210 (432)
T ss_pred cccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccc--cchHHHHHHHHHH
Confidence 13333335799999999987778865442222 244 3459999999999999999999863 321110 0111
Q ss_pred CC--CCcEEEECCCccCccccEEEEEE-eCCCCchhHHHHHHhhccCCCccC-CChH
Q 016668 302 FK--YCDVVTTTTHKSLRGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQG-GPHN 354 (385)
Q Consensus 302 ~~--gaDiv~~S~hK~l~GprgG~I~~-~~~~~~~~~~~~~i~~~~fp~~qg-~p~~ 354 (385)
-+ ..|.++.|+.|.|.-|-||.|+. =++ .+...|.+ +|||-.+ .|+-
T Consensus 211 ~~~grida~vqsldknf~vpvggaiia~fk~-----n~iq~iak-~ypgrasa~ps~ 261 (432)
T KOG3843|consen 211 AECGRIDAFVQSLDKNFMVPVGGAIIAAFKD-----NFIQEIAK-MYPGRASASPSL 261 (432)
T ss_pred hhhccHHHHHHHhhhcceeecchhHhhHhHH-----HHHHHHHH-hCCCccccCccH
Confidence 11 46888999999999998876543 232 56666654 4666433 4443
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.1 Score=44.28 Aligned_cols=175 Identities=15% Similarity=0.083 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHcCC-CCCCCcceeecCCcH-HHHHHHHHHhccC---CC---EEeecCCCCCccccCCccccccccc
Q 016668 147 DELETLCQKRALAAFNL-DENKWGVNVQPLSGS-PANFEVYTAILKP---HD---RIMGLDLPHGGHLSHGFMTPKRRVS 218 (385)
Q Consensus 147 ~~le~~~~~~la~lfg~-~~~~~~~~V~~~sGs-~A~~~a~~all~p---GD---~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (385)
.+||+.++ ++-++.|= ..++ --|.+.+|+ +-+.+++.+|..+ .+ .|+...|=|..+.. ++..
T Consensus 46 ~eL~~~Ir-~LH~~VGNAvt~g--r~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~---qt~~---- 115 (363)
T PF04864_consen 46 PELERQIR-RLHRVVGNAVTDG--RYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPE---QTDF---- 115 (363)
T ss_dssp HHHHHHHH-HHHHHH-SB--TT--SEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHH---HCCC----
T ss_pred HHHHHHHH-HHHHHhccccccC--cEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHH---HHHh----
Confidence 37777554 56666663 2221 134455555 5888888888422 22 56665553332211 1110
Q ss_pred cCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEE-EEcCCCCCCCCCHHHHHH-HHHHcCcEEEEeccccccccccC
Q 016668 219 GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI-IAGASAYPRDFDYPRMRQ-IADAVGALLMMDMAHISGLVAAS 296 (385)
Q Consensus 219 ~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklI-i~~~s~~~~~~dl~~I~~-ia~~~ga~livD~ah~~Gli~~g 296 (385)
+.+..+++.- |...+. + .......| ++.+||||.- .|++ +.+.-+..+|+|-|++--..
T Consensus 116 f~s~~y~w~G---da~~~~-~--------~~~~~~~IElVTSPNNPDG----~lr~~V~~g~~~k~I~D~AYYWPhy--- 176 (363)
T PF04864_consen 116 FDSRLYKWAG---DASNFK-N--------SDNPSPYIELVTSPNNPDG----QLREAVLNGSSGKVIHDLAYYWPHY--- 176 (363)
T ss_dssp T-BTTEEEEE---ECCCGT-T---------S-CCGEEEEEESS-TTT----------SSTTTEEEEEEE-TT-STTT---
T ss_pred ccccCccccc---cHHhhc-c--------CCCCCCeEEEEeCCCCCcc----cccchhcCCCCcceeeeeeeecccc---
Confidence 1122233221 111111 1 01122344 6778888842 1222 23455677899999753211
Q ss_pred cccCCCC---CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHH
Q 016668 297 VVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIG 358 (385)
Q Consensus 297 ~~~~p~~---gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~ia 358 (385)
.|+. .-|++.||++|.= +|-|-||.+.+++ ++.+++...+-....|-....++=
T Consensus 177 ---TpI~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~-----~Va~kM~~y~~lnTiGvS~dsQLR 235 (363)
T PF04864_consen 177 ---TPITAPADHDIMLFTLSKLTGHAGSRFGWALVKDE-----EVAKKMTKYMELNTIGVSRDSQLR 235 (363)
T ss_dssp ---S---S-B--SEEEEEHHHHCS-GGG-EEEEEES-H-----HHHHHHHHHHHHHCSS--HHHHHH
T ss_pred ---cccCCCCCCceEEEEEecccCccccccceeeecCH-----HHHHHHHHHHHHhcccCcHHHHHH
Confidence 2332 3479999999952 5567799999997 777777655444444444444443
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 385 | ||||
| 3ou5_A | 490 | Human Mitochondrial Serine Hydroxymethyltransferase | 1e-114 | ||
| 1bj4_A | 470 | Recombinant Serine Hydroxymethyltransferase (human) | 1e-112 | ||
| 1ls3_B | 483 | Crystal Structure Of The Complex Between Rabbit Cyt | 1e-111 | ||
| 1cj0_A | 470 | Crystal Structure Of Rabbit Cytosolic Serine Hydrox | 1e-111 | ||
| 1rvu_A | 483 | E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethy | 1e-111 | ||
| 1rv3_A | 483 | E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethy | 1e-110 | ||
| 1eji_A | 478 | Recombinant Serine Hydroxymethyltransferase (Mouse) | 1e-106 | ||
| 1kkj_A | 419 | Crystal Structure Of Serine Hydroxymethyltransferas | 2e-76 | ||
| 2vmv_A | 405 | Crystal Structure Of F351gbsshmt Internal Aldimine | 3e-76 | ||
| 2vmn_A | 405 | Crystal Structure Of N341absshmt Internal Aldimine | 3e-76 | ||
| 2vi8_A | 405 | Crystal Structure Of S172absshmt Internal Aldimine | 5e-76 | ||
| 1yjs_A | 419 | K226q Mutant Of Serine Hydroxymethyltransferase Fro | 5e-76 | ||
| 2vgs_A | 407 | Crystal Structure Of E53qbsshmt Internal Aldimine L | 7e-76 | ||
| 2w7d_A | 405 | Crystal Structure Of Y51fbsshmt Internal Aldimine L | 8e-76 | ||
| 1yjy_A | 419 | K226m Mutant Of Serine Hydroxymethyltransferase Fro | 1e-75 | ||
| 2w7i_A | 405 | Crystal Structure Of Y61absshmt Internal Aldimine L | 3e-75 | ||
| 2vmr_A | 405 | Crystal Structure Of Y60absshmt Internal Aldimine L | 3e-75 | ||
| 3h7f_A | 447 | Crystal Structure Of Serine Hydroxymethyltransferas | 7e-75 | ||
| 3ecd_A | 425 | Crystal Structure Of Serine Hydroxymethyltransferas | 1e-74 | ||
| 2dkj_A | 407 | Crystal Structure Of T.Th.Hb8 Serine Hydroxymethylt | 6e-74 | ||
| 3pgy_A | 415 | Serine Hydroxymethyltransferase From Staphylococcus | 3e-73 | ||
| 3n0l_A | 417 | Crystal Structure Of Serine Hydroxymethyltransferas | 4e-71 | ||
| 1dfo_A | 417 | Crystal Structure At 2.4 Angstrom Resolution Of E. | 6e-71 | ||
| 1eqb_A | 417 | X-Ray Crystal Structure At 2.7 Angstroms Resolution | 2e-70 | ||
| 3g8m_A | 417 | Serine Hydroxymethyltransferase Y55f Mutant Length | 2e-70 | ||
| 3gbx_A | 420 | Serine Hydroxymethyltransferase From Salmonella Typ | 7e-67 |
| >pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2 Length = 490 | Back alignment and structure |
|
| >pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human) Length = 470 | Back alignment and structure |
|
| >pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic Serine Hydroxymethyltransferase And Triglu-5-Formyl-Tetrahydrofolate Length = 483 | Back alignment and structure |
|
| >pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine Hydroxymethyltransferase At 2.8 Angstrom Resolution Length = 470 | Back alignment and structure |
|
| >pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase Length = 483 | Back alignment and structure |
|
| >pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase, Complex With Glycine Length = 483 | Back alignment and structure |
|
| >pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse) Length = 478 | Back alignment and structure |
|
| >pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From B.Stearothermophilus Length = 419 | Back alignment and structure |
|
| >pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Glycine Length = 419 | Back alignment and structure |
|
| >pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine Length = 407 | Back alignment and structure |
|
| >pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Serine Length = 419 | Back alignment and structure |
|
| >pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Mycobacterium Tuberculosis Length = 447 | Back alignment and structure |
|
| >pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Burkholderia Pseudomallei Length = 425 | Back alignment and structure |
|
| >pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine Hydroxymethyltransferase Length = 407 | Back alignment and structure |
|
| >pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus Aureus, S95p Mutant. Length = 415 | Back alignment and structure |
|
| >pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Campylobacter Jejuni Length = 417 | Back alignment and structure |
|
| >pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli Serine Hydroxymethyltransferase In Complex With Glycine And 5-Formyl Tetrahydrofolate Length = 417 | Back alignment and structure |
|
| >pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate Length = 417 | Back alignment and structure |
|
| >pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant Length = 417 | Back alignment and structure |
|
| >pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella Typhimurium Length = 420 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Length = 483 | Back alignment and structure |
|---|
Score = 602 bits (1554), Expect = 0.0
Identities = 198/310 (63%), Positives = 233/310 (75%), Gaps = 9/310 (2%)
Query: 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP 135
+ L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS G P
Sbjct: 18 EQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYP 77
Query: 136 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRI 195
G+RYYGG E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RI
Sbjct: 78 GQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRI 137
Query: 196 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255
MGLDLP GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLI
Sbjct: 138 MGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLI 197
Query: 256 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS 315
IAG S Y R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+
Sbjct: 198 IAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKT 257
Query: 316 LRGPRGGMIFFKKDP---------VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366
LRG R GMIF+++ + LES IN+AVFPGLQGGPHNH I G+AV LK
Sbjct: 258 LRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQ 317
Query: 367 AQSPEFKVYQ 376
A +PEFK YQ
Sbjct: 318 AMTPEFKEYQ 327
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A Length = 490 | Back alignment and structure |
|---|
Score = 600 bits (1549), Expect = 0.0
Identities = 191/327 (58%), Positives = 235/327 (71%), Gaps = 9/327 (2%)
Query: 59 RPPSSVSVPIPEIGGDGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAV 118
R S + + SL ++DPE+ E++ +EK+RQ + LELIASENF SRA
Sbjct: 11 RAQHSNAAQTQTGEANRGWTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAA 70
Query: 119 MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178
+EA+GSCL NKYSEG PGKRYYGG E +DE+E LCQ+RAL AF+LD +WGVNVQP SGS
Sbjct: 71 LEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS 130
Query: 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238
PAN VYTA+L+PHDRIMGLDLP GGHL+HG+M+ +R+S TSI+FESMPY+L+ TGL+
Sbjct: 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI 190
Query: 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298
DY+ L TA LFRP+LIIAG SAY R DY RMR++ D V A L+ DMAHISGLVAA V+
Sbjct: 191 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVI 250
Query: 299 ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP---------VLGVELESAINNAVFPGLQ 349
PFK+ D+VTTTTHK+LRG R G+IF++K + E IN AVFP LQ
Sbjct: 251 PSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 310
Query: 350 GGPHNHTIGGLAVCLKHAQSPEFKVYQ 376
GGPHNH I +AV LK A +P F+ Y
Sbjct: 311 GGPHNHAIAAVAVALKQACTPMFREYS 337
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 432 bits (1114), Expect = e-151
Identities = 143/295 (48%), Positives = 191/295 (64%), Gaps = 15/295 (5%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYG
Sbjct: 3 YLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYG 62
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L
Sbjct: 63 GCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLS 118
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG V+ + + + + Y +D T ++DYD + + A L RPKLI+A A+A
Sbjct: 119 HGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAA 173
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
YPR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRG
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG 233
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376
GMI ++ + I+ A+FPG+QGGP H I AV A +FK Y
Sbjct: 234 GMILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYA 282
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Length = 420 | Back alignment and structure |
|---|
Score = 430 bits (1109), Expect = e-150
Identities = 150/297 (50%), Positives = 195/297 (65%), Gaps = 13/297 (4%)
Query: 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 139
+ ++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRY
Sbjct: 8 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 67
Query: 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 199
YGG EY+D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++
Sbjct: 68 YGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGMN 123
Query: 200 LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259
L GGHL+HG SG + +PY +DE +G +DYD + K A +PK+II G
Sbjct: 124 LAQGGHLTHG---SPVNFSG--KLYNIVPYGIDE-SGKIDYDEMAKLAKEHKPKMIIGGF 177
Query: 260 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 319
SAY D+ +MR+IAD++GA L +DMAH++GL+AA V +P + VVTTTTHK+L GP
Sbjct: 178 SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGP 237
Query: 320 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376
RGG+I K EL +N+AVFP QGGP H I G AV LK A PEFKVYQ
Sbjct: 238 RGGLILAKGG---DEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQ 291
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Length = 447 | Back alignment and structure |
|---|
Score = 431 bits (1111), Expect = e-150
Identities = 149/303 (49%), Positives = 195/303 (64%), Gaps = 15/303 (4%)
Query: 74 DGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEG 133
G + L E DP++ E++ KE RQ +LE+IASENF RAV++A GS LTNKY+EG
Sbjct: 17 QGPGSMSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEG 76
Query: 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193
LPG+RYYGG E++D +E L + RA A F + NVQP SG+ AN V A++ P +
Sbjct: 77 LPGRRYYGGCEHVDVVENLARDRAKALFGAEF----ANVQPHSGAQANAAVLHALMSPGE 132
Query: 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 253
R++GLDL +GGHL+HG + SG +E+ Y +D +T L+D D + TA+ FRPK
Sbjct: 133 RLLGLDLANGGHLTHGM---RLNFSGK--LYENGFYGVDPATHLIDMDAVRATALEFRPK 187
Query: 254 LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH 313
+IIAG SAYPR D+ R IAD VGA L++DMAH +GLVAA + P + DVV+TT H
Sbjct: 188 VIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVH 247
Query: 314 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
K+L G R G+I K+ + AIN+AVFPG QGGP H I G AV LK A +PEF
Sbjct: 248 KTLGGGRSGLIVGKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFA 301
Query: 374 VYQ 376
Q
Sbjct: 302 DRQ 304
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} Length = 407 | Back alignment and structure |
|---|
Score = 430 bits (1107), Expect = e-150
Identities = 145/295 (49%), Positives = 188/295 (63%), Gaps = 14/295 (4%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
S + D + E+I E++RQ + LELIASENF S+ V EAVGS LTNKY+EG PG RYYG
Sbjct: 3 STLKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYG 62
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E ID +E+L +RA A F NVQP SGS AN VY A+++P D +MG+DL
Sbjct: 63 GCEVIDRVESLAIERAKALFGAAW----ANVQPHSGSQANMAVYMALMEPGDTLMGMDLA 118
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HG + SG ++ + Y + T L+D + + + A+ RPK+I+AGASA
Sbjct: 119 AGGHLTHGS---RVNFSG--KLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASA 173
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
YPR +D+ R+IAD VGA L++DMAH +GLVAA + +P Y VVT+TTHK+LRGPRG
Sbjct: 174 YPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG 233
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376
G+I EL I+ +FPG+QGGP H I G AV A PEFK Y
Sbjct: 234 GLILSNDP-----ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYS 283
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} Length = 425 | Back alignment and structure |
|---|
Score = 430 bits (1107), Expect = e-150
Identities = 150/303 (49%), Positives = 190/303 (62%), Gaps = 14/303 (4%)
Query: 74 DGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEG 133
+ + F SL E D V I KE ERQ +ELIASEN SRAV++A GS LTNKY+EG
Sbjct: 4 NANPFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEG 63
Query: 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193
PGKRYYGG E+ DE+E L +R FN NVQP SG+ AN V A+ KP D
Sbjct: 64 YPGKRYYGGCEFADEVEALAIERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGD 119
Query: 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 253
++G+ L GGHL+HG K +SG +F ++ Y + T L+DYD +E A +P
Sbjct: 120 TVLGMSLDAGGHLTHGA---KPALSG--KWFNALQYGVSRDTMLIDYDQVEALAQQHKPS 174
Query: 254 LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH 313
LIIAG SAYPR D+ R R IAD+VGA LM+DMAHI+G++AA A+P ++ VVT+TTH
Sbjct: 175 LIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTH 234
Query: 314 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
K+LRGPRGG + + E+ IN+AVFPGLQGGP H I G AV A + +FK
Sbjct: 235 KTLRGPRGGFVLTNDE-----EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFK 289
Query: 374 VYQ 376
Y
Sbjct: 290 TYI 292
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} Length = 417 | Back alignment and structure |
|---|
Score = 428 bits (1102), Expect = e-149
Identities = 147/295 (49%), Positives = 188/295 (63%), Gaps = 15/295 (5%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL D E+ ++ KE ERQ + LE+IASENFT VME +GS LTNKY+EG PGKRYYG
Sbjct: 5 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYG 64
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E++DE+ETL +R FN NVQP SGS AN VY A++ P D+I+G+DL
Sbjct: 65 GCEFVDEIETLAIERCKKLFNCKF----ANVQPNSGSQANQGVYAALINPGDKILGMDLS 120
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG K SG +ES Y ++ G +DY+ + + A +PKLI+ GASA
Sbjct: 121 HGGHLTHG---AKVSSSG--KMYESCFYGVEL-DGRIDYEKVREIAKKEKPKLIVCGASA 174
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R D+ + R+IAD +GA L D+AHI+GLV A PF Y VV++TTHK+LRGPRG
Sbjct: 175 YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG 234
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376
G+I + EL IN+A+FPG+QGGP H I AV K S E+KVY
Sbjct: 235 GIIMTNDE-----ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYA 284
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 1e-10
Identities = 45/306 (14%), Positives = 86/306 (28%), Gaps = 51/306 (16%)
Query: 98 KERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157
+E + + L + + + + +++ + G Y G+E LE R
Sbjct: 29 QEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAYAGSENFYHLE-----RT 83
Query: 158 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMG---LDLPHGGHLSHGFMTPK 214
+ ++ + G A + +KP + G +G
Sbjct: 84 VQELFGFKHIVPTH----QGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNGA---- 135
Query: 215 RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI----------IAGASAYPR 264
G +D L+K + I +AG
Sbjct: 136 -VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSM 194
Query: 265 DFDYPRMRQIADAVGALLMMDMAHISG--------------LVAASVVADPFKYCDVVTT 310
+ +R++ +A G + D A +V + F Y D T
Sbjct: 195 A-NMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTM 253
Query: 311 TTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGL----QGGPHNHTIGGLAVCLKH 366
+ K GG + D E+ S+ V GG + +A+ L+
Sbjct: 254 SGKKDCLVNIGGFLCMNDD-----EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE 308
Query: 367 AQSPEF 372
A E+
Sbjct: 309 AMQYEY 314
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 1e-06
Identities = 47/342 (13%), Positives = 94/342 (27%), Gaps = 106/342 (30%)
Query: 80 DYSLGEADPEVCEIITKEKERQFKSLELIAS-ENFTSRAVMEAVGSCLTNKYSEGLPGKR 138
D E + I K+ +L L + + V + V L Y
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-------- 91
Query: 139 YYGGNEYI-DELETLCQKRAL--AAFNLDENKWGVNVQPLSGSPAN---FEVYTAI---- 188
+++ ++T ++ ++ + ++ + Q + N + Y +
Sbjct: 92 -----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQAL 144
Query: 189 --LKPHDRI----MG------------LDLPHGGHLSHG-F-MTPKRRVSGTSI--YFES 226
L+P + + L + F + K S ++ +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 227 MPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPRDF----DYPRMRQIADAVGAL 281
+ Y++D + T D+ KL I A R Y L
Sbjct: 205 LLYQIDPNWTSRSDHS--------SNIKLRIHSIQAELRRLLKSKPYEN---------CL 247
Query: 282 LMMDMAHISGLVAASVVADPFKY-CDVVTTT--------------THKSLRGPRGGMIFF 326
L++ + V + + F C ++ TT TH SL
Sbjct: 248 LVLL--N----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---L 298
Query: 327 KKDPVLGVELESAINNAVF--P--GLQGGPHNHTIGGLAVCL 364
D V + L ++ P L P + +
Sbjct: 299 TPDEVKSL-LLKYLDCRPQDLPREVLTTNP-------RRLSI 332
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 1e-05
Identities = 38/216 (17%), Positives = 61/216 (28%), Gaps = 39/216 (18%)
Query: 176 SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKR-RVSGTSIYFESMPYRLDES 234
G A ++ +LK + P H T ++G D
Sbjct: 99 QGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSE 158
Query: 235 T-----GLVDYDMLEKTAILFRPKLIIA---------GASAYPRDFDYPR-MRQIADAVG 279
T G D L++ I I A P + + +IA G
Sbjct: 159 TYDDWKGDFDIKKLKE-NIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217
Query: 280 ALLMMDMAHI--------------SGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIF 325
++MD A V+ D +KY D +T + K GG++
Sbjct: 218 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVA 277
Query: 326 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLA 361
+ + E+ + T GGLA
Sbjct: 278 IRDNE----EIFTLARQ----RCVPMEGFVTYGGLA 305
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 385 | |||
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 100.0 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 100.0 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 100.0 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 100.0 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 100.0 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 100.0 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 100.0 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 100.0 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 100.0 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.91 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.89 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.86 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.86 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.86 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.86 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.86 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.86 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.85 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.85 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.85 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.85 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.85 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.85 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.85 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.84 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.84 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.84 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.84 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.83 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.83 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.83 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.83 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.83 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.83 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.83 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.83 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.83 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.83 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.82 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.82 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.82 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.82 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.82 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.82 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.82 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.82 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.82 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.82 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.82 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.81 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.81 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.81 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.81 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.81 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.81 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.81 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.81 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.81 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.81 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.81 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.81 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.81 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.81 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.81 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.81 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.81 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.81 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.81 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.8 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.8 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.8 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.8 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.8 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.8 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.8 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.8 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.8 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.79 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.79 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.79 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.79 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.79 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.79 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.79 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.79 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.79 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.79 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.79 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.79 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.79 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.79 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.79 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.79 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.78 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.78 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.78 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.78 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.78 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.78 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.78 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.78 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.78 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.77 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.77 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.77 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.77 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.77 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.77 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.77 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.77 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.76 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.76 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.76 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.75 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.75 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.75 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.75 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.75 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.75 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.74 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.74 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.74 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.74 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.74 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.74 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.74 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.74 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.74 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.74 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.74 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.74 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.74 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.73 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.73 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.73 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.73 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.73 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.73 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.73 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.73 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.73 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.73 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.73 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.72 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.72 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.72 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.72 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.72 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.72 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.72 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.71 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.71 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.71 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.7 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.7 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.7 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.7 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.7 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.69 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.69 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.69 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.69 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.68 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.51 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.68 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.67 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.67 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.67 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.67 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.67 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.67 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.67 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.66 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.66 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.66 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.65 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.65 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.65 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.64 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.64 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.64 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.64 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.63 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.63 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.63 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.62 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.62 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.62 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.62 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.61 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.61 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.61 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.61 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.61 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.61 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.6 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.6 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.6 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.6 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.59 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.59 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.58 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.58 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.57 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.57 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.57 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.55 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.55 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.55 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.54 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.54 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.53 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.53 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.53 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.51 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.5 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.49 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.49 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.49 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.48 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.48 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.48 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.48 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.47 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.44 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.42 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.42 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.41 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.28 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.23 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 98.85 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.21 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.15 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 98.83 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 98.37 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.29 |
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-79 Score=610.45 Aligned_cols=307 Identities=62% Similarity=1.023 Sum_probs=257.9
Q ss_pred chhhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 016668 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (385)
Q Consensus 77 ~~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~ 156 (385)
+.....|++.||+++++|++|+.||+.+|+||||||++|+.|+++++|+|+|+|+|||||.|||+||+++|++|.+|++|
T Consensus 29 ~~~~~~l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~r 108 (490)
T 3ou5_A 29 WTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRR 108 (490)
T ss_dssp CSSCCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHH
T ss_pred cccccchhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHH
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC
Q 016668 157 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (385)
Q Consensus 157 la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 236 (385)
++++||+++++|+|||||.||+.||++++.+|++|||+||.+++.+|||++||+++...++++.|..|+.++|++|++++
T Consensus 109 ak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~ 188 (490)
T 3ou5_A 109 ALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTG 188 (490)
T ss_dssp HHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTT
T ss_pred HHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999876556788999999999999999999
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccC
Q 016668 237 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316 (385)
Q Consensus 237 ~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l 316 (385)
.||+|+++++++++|||+|++|.|.|++.+|++++++||+++|++|++|+||.+||+++|.+|+|+++|||+|+||||||
T Consensus 189 ~IDyd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTL 268 (490)
T 3ou5_A 189 LIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTL 268 (490)
T ss_dssp EECHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTT
T ss_pred cccHHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEEEEeCCCC---------chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 317 RGPRGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 317 ~GprgG~I~~~~~~~---------~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
+|||||+|+++++.. ..+++.++|++++||++|||||+|.|||+|+||+|+++++|++|++||++|.
T Consensus 269 rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NA 344 (490)
T 3ou5_A 269 RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNA 344 (490)
T ss_dssp CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998521 2346899999999999999999999999999999999999999999999984
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=445.19 Aligned_cols=304 Identities=62% Similarity=1.043 Sum_probs=241.9
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALA 159 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~ 159 (385)
..+|+++||+++++|++|+.||+++|+||+|||++|+.|++++.+.++++|++|||++|||+|+++++++|++|++++++
T Consensus 32 ~~~l~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~ 111 (490)
T 2a7v_A 32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 111 (490)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHH
T ss_pred cchhhhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCC
Q 016668 160 AFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD 239 (385)
Q Consensus 160 lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD 239 (385)
+||+++++|+++|+++|||.||.+++.++++|||+|+++++.|+||++|+++.....+.+.|..++.++++++++++.+|
T Consensus 112 l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD 191 (490)
T 2a7v_A 112 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID 191 (490)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBC
T ss_pred HcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcC
Confidence 99999877877899999999999999999999999999999999999998754333455677777778888887788999
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccc
Q 016668 240 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 319 (385)
Q Consensus 240 ~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gp 319 (385)
+++|++.+++++||+|+++.++||+.+|+++|++||+++|++|++|++|++|+++.|..+++++++|++++|+||+|+||
T Consensus 192 ~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp 271 (490)
T 2a7v_A 192 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 271 (490)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC
T ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccc
Confidence 99999999766899999999999999999999999999999999999999999888877788889999999999999999
Q ss_pred cEEEEEEeCCCC---------chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 320 RGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 320 rgG~I~~~~~~~---------~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
+||+|+++++.+ .++++.+++++.+|+++||+|+++.++|+++|++++..++|++|++++++|.
T Consensus 272 ~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na 344 (490)
T 2a7v_A 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNA 344 (490)
T ss_dssp SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999998521 1135788999999999999999999999999999999999999999998874
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=397.64 Aligned_cols=308 Identities=64% Similarity=1.048 Sum_probs=272.3
Q ss_pred cchhhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 76 SSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 76 ~~~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
+.+++++|+++||+++.++++|..+|+..|+|++++|++|+.|++++.+.+.++|.+|||++++|+|++.++++|+.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~ 97 (483)
T 1rv3_A 18 EQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQK 97 (483)
T ss_dssp HHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC
Q 016668 156 RALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (385)
Q Consensus 156 ~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 235 (385)
+++++||+++++|+++|+++||+.||.+++.++++|||+|++++++|++|++|++......+.+.|..++.+++++++++
T Consensus 98 ~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~ 177 (483)
T 1rv3_A 98 RALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT 177 (483)
T ss_dssp HHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTT
T ss_pred HHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCC
Confidence 99999999976676789999999999999999999999999999999999988864333345566666788888777677
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCcc
Q 016668 236 GLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKS 315 (385)
Q Consensus 236 ~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~ 315 (385)
+.+|+++|++.+++.+||+|+++.+++++..|+++|++||+++|++|++|++|+.|++..+..++|+.++|++++|+||+
T Consensus 178 ~~iD~d~le~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~ 257 (483)
T 1rv3_A 178 GYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKT 257 (483)
T ss_dssp CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGG
T ss_pred CcCCHHHHHHHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCccc
Confidence 89999999999975689999887677778889999999999999999999999999988777777777899999999999
Q ss_pred CccccEEEEEEeCCCC---------chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 316 LRGPRGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 316 l~GprgG~I~~~~~~~---------~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
|+||+||+|+++++.+ ..|++.++++...|++.+|+|+.+.++|+++|++++..++|++|++++.+|+
T Consensus 258 l~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~ 334 (483)
T 1rv3_A 258 LRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANC 334 (483)
T ss_dssp GCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 9999999999998521 0113667788888999999999999999999999998888999999988764
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=331.15 Aligned_cols=289 Identities=51% Similarity=0.802 Sum_probs=254.3
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
..+++..++|++++.+.+|..|+.+.++|++++|+++|.|++++.+.+.++|.+||++.+++.|++..+.+|++++++++
T Consensus 22 ~~~~l~~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la 101 (447)
T 3h7f_A 22 MSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAK 101 (447)
T ss_dssp GGCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999988999999999999999999999988879999
Q ss_pred HHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCC
Q 016668 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~i 238 (385)
+++|++. ++++++||+.||..++.++++|||+|+++++.|++|+.++. .+...|..+..++++++++++.+
T Consensus 102 ~~~g~~~----~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~ 172 (447)
T 3h7f_A 102 ALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGM-----RLNFSGKLYENGFYGVDPATHLI 172 (447)
T ss_dssp HHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHSSEEEEECCCTTTCSC
T ss_pred HHcCCCc----eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhh-----hhhhcCCeeEEEEcCcCcccCCc
Confidence 9999986 46668999999999999999999999999999888776654 22344555566677777667889
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCcc
Q 016668 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318 (385)
Q Consensus 239 D~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~G 318 (385)
|++++++.++..+||+|+++.+++|...++++|+++|+++|++|++|++|+.|++..|..+++++++|++++|+||+|+|
T Consensus 173 d~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G 252 (447)
T 3h7f_A 173 DMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGG 252 (447)
T ss_dssp CHHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCC
T ss_pred CHHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCC
Confidence 99999999976689999998888898889999999999999999999999999887776667777889999999999999
Q ss_pred ccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 319 PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 319 prgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
|+||++++++ ++.+.++...+++.++++....++|+++|+.++..++++++.+++.+|
T Consensus 253 ~~gG~i~~~~------~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 310 (447)
T 3h7f_A 253 GRSGLIVGKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSG 310 (447)
T ss_dssp CSCEEEEECG------GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred CCeEEEEECH------HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 9999999987 577888888888899999999999999999998877888888888765
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=306.89 Aligned_cols=287 Identities=51% Similarity=0.831 Sum_probs=240.2
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~l 160 (385)
.+++.+||++++.+.+|..++...++|++++|++++.|++++...+.+.|.++|++.++|.|....+++++.++++++++
T Consensus 4 ~~~~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 83 (417)
T 3n0l_A 4 MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKL 83 (417)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHH
Confidence 46788999999999999888889999999999999999999999988888889999999999999999999999999999
Q ss_pred cCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCH
Q 016668 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (385)
Q Consensus 161 fg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~ 240 (385)
+|++. .+|.+++|++|+..++.++++|||+|++.++.|+++..++. .+...|..+..++++++ +++.+|+
T Consensus 84 ~g~~~----~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~ 153 (417)
T 3n0l_A 84 FNCKF----ANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGA-----KVSSSGKMYESCFYGVE-LDGRIDY 153 (417)
T ss_dssp HTCSE----EECCCSSHHHHHHHHHHHHSCTTCEEEEECC---------------------CCSEEEEECCC-TTSSCCH
T ss_pred hCCCC----cceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhh-----hhhhhcceeeeEeccCC-CCCCcCH
Confidence 99976 35788999999999999999999999999998877765443 23344555566676676 5678999
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCcccc
Q 016668 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR 320 (385)
Q Consensus 241 d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gpr 320 (385)
++|++.+++.++|+|+++.+++|...|+++|.++|+++|++||+|++|+.|+...+..+.++.++|++++|+||+|+||+
T Consensus 154 ~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~ 233 (417)
T 3n0l_A 154 EKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPR 233 (417)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCS
T ss_pred HHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCC
Confidence 99999997558999999888889999999999999999999999999998888776666666678999999999999999
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 321 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
||+++++++ ++.+.+....+++.+++++...+++++.++.+....+++++.+++.++
T Consensus 234 ~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~ 290 (417)
T 3n0l_A 234 GGIIMTNDE-----ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTN 290 (417)
T ss_dssp CEEEEESCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred eeEEEECCH-----HHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999854 788888887788888899999999999999887777778888777654
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=291.34 Aligned_cols=287 Identities=52% Similarity=0.829 Sum_probs=220.3
Q ss_pred cccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC
Q 016668 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN 162 (385)
Q Consensus 83 l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg 162 (385)
++.++|+++++++++..++.+.+.+++++|+++|.|.+++...+.+.+..||++.+++.+....+.+++.+++++++++|
T Consensus 11 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (420)
T 3gbx_A 11 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG 90 (420)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC
Confidence 78899999999999988888899999999999999999999988788888999988888887778889888899999999
Q ss_pred CCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHH
Q 016668 163 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM 242 (385)
Q Consensus 163 ~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~ 242 (385)
++. ..|.+++|++|+..++.++++|||+|++.++.|+++..++. .+...|..+..++++++ +++.+|+++
T Consensus 91 ~~~----~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~-~~~~~d~~~ 160 (420)
T 3gbx_A 91 ADY----ANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGS-----PVNFSGKLYNIVPYGID-ESGKIDYDE 160 (420)
T ss_dssp CSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC-----------------CHHHHSEEEEEEEC-TTCSCCHHH
T ss_pred CCC----ceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccch-----hhhhcccceeEEeccCC-ccCCcCHHH
Confidence 976 35778899999999999999999999999998877654443 22344554566666666 567899999
Q ss_pred HHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccEE
Q 016668 243 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322 (385)
Q Consensus 243 le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~GprgG 322 (385)
|++.+++.++++|+++.+++|...|+++|+++|+++|++||+|++|+.|+...+..+.++...|++++|+||+|.||+||
T Consensus 161 l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gg 240 (420)
T 3gbx_A 161 MAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGG 240 (420)
T ss_dssp HHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSCE
T ss_pred HHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCce
Confidence 99999776799999988889988999999999999999999999998887766655555667899999999999999999
Q ss_pred EEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
+++++++. .++.+.++...+++.++++....+++++.++.+...++++++.+++.++
T Consensus 241 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 297 (420)
T 3gbx_A 241 LILAKGGD---EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKN 297 (420)
T ss_dssp EEEESSCC---HHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred EEEEcCCc---HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99998721 1577778887888888899999999999999887777777777666544
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=291.37 Aligned_cols=292 Identities=50% Similarity=0.802 Sum_probs=221.7
Q ss_pred chhhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 016668 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (385)
Q Consensus 77 ~~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~ 156 (385)
.++..++..++|+++..+.++..++.+.++|++++|+.++.|++++...+.+.|..++++.+++.|....+.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (425)
T 3ecd_A 7 PFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIER 86 (425)
T ss_dssp HHHHCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHH
T ss_pred hHHHHHHHhhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHH
Confidence 34677899999999999999888888889999999999999999999988888888999988888887667788888889
Q ss_pred HHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC
Q 016668 157 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (385)
Q Consensus 157 la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 236 (385)
+++++|++. +.|.++||+.|+..++.++++|||+|++.++.|+++..++. .....|..++.++++++++++
T Consensus 87 ~~~~~~~~~----~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~ 157 (425)
T 3ecd_A 87 VKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGA-----KPALSGKWFNALQYGVSRDTM 157 (425)
T ss_dssp HHHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECC-----------------------CEEEEECCCTTTS
T ss_pred HHHHhCCCC----ceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecch-----hhhhcccceeeeecCCCcccC
Confidence 999999986 35668899999999999999999999999998876544432 222445555666776766667
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccC
Q 016668 237 LVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316 (385)
Q Consensus 237 ~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l 316 (385)
.+|+++|++.+++.++++|+++.+++|...++++|.++|+++|++||+|++|+.|+...+..+.+++.+|++++|+||+|
T Consensus 158 ~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l 237 (425)
T 3ecd_A 158 LIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTL 237 (425)
T ss_dssp SCCHHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGG
T ss_pred ccCHHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCccc
Confidence 89999999999755899999988888999999999999999999999999998888766655555556899999999999
Q ss_pred ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 317 RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 317 ~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
+||+||+++++++ ++.+.+....+++.++++....+++++.++.+...++++++.+++.++
T Consensus 238 ~g~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 298 (425)
T 3ecd_A 238 RGPRGGFVLTNDE-----EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLAN 298 (425)
T ss_dssp CCCSCEEEEESCH-----HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCH-----HHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999875 678888887888888889999999999999887776667776666543
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=263.94 Aligned_cols=282 Identities=51% Similarity=0.865 Sum_probs=221.3
Q ss_pred cccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC
Q 016668 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN 162 (385)
Q Consensus 83 l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg 162 (385)
+.++||+++..+.++..++.+.+.+.+++++.++.|++++...+.+++..||++.+++.|.+...++++.+++++++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g 83 (405)
T 2vi8_A 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG 83 (405)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC
Confidence 56789999999999888887777777899999999999999888667777888888888877778899888999999999
Q ss_pred CCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHH
Q 016668 163 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDM 242 (385)
Q Consensus 163 ~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~ 242 (385)
++. ..+.+++|+.|+..++.++++|||+|+++++.|+++..... .+...|..++.++++++++++.+|+++
T Consensus 84 ~~~----~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~ 154 (405)
T 2vi8_A 84 AEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDYDD 154 (405)
T ss_dssp CSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-----TTSHHHHHSEEEEECBCTTTCSBCHHH
T ss_pred CCc----eEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-----hhhhccceeEEEecccccccCCcCHHH
Confidence 985 35667899999999999999999999999987765532111 112334433555666654567899999
Q ss_pred HHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccEE
Q 016668 243 LEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322 (385)
Q Consensus 243 le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~GprgG 322 (385)
+++.+++.++++|+++.++++...|+++|.++|+++|++|++|++|+.|....+..+..+++.|++++|+||+|.||.||
T Consensus 155 l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG 234 (405)
T 2vi8_A 155 VREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234 (405)
T ss_dssp HHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCE
T ss_pred HHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCCe
Confidence 99998755789998876778877799999999999999999999998665544433333446899999999999888899
Q ss_pred EEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016668 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379 (385)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v 379 (385)
++++++ ++.+++.....++..++++...++++..+++.+....+++..+++
T Consensus 235 ~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~ 285 (405)
T 2vi8_A 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRV 285 (405)
T ss_dssp EEEECH------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred EEEEcH------HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999986 677777766556666778888898888888776554444444443
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=263.11 Aligned_cols=283 Identities=51% Similarity=0.824 Sum_probs=224.3
Q ss_pred ccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 016668 84 GEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL 163 (385)
Q Consensus 84 ~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~ 163 (385)
...||++++.+.++..++...+++..++|+.++.|++++...+.+.+..+||+.+++.|.+..+.+|+.+++++++++|+
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~ 84 (407)
T 2dkj_A 5 LKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA 84 (407)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC
Confidence 45689999999999888888899999999999999999998886656667888777778887778888888999999999
Q ss_pred CCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHH
Q 016668 164 DENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 243 (385)
Q Consensus 164 ~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~l 243 (385)
+. .+|.+++|+.|+..++.++++|||+|+++++.|+++..... .+...|..+..++++++++++.+|++++
T Consensus 85 ~~----~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l 155 (407)
T 2dkj_A 85 AW----ANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGS-----RVNFSGKLYKVVSYGVRPDTELIDLEEV 155 (407)
T ss_dssp SE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECCCTTTSSCCHHHH
T ss_pred Cc----ceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHH-----HHHhcCceEEEEecCCCcccCccCHHHH
Confidence 86 35778899999999999999999999999987766532111 2334455445666655544678999999
Q ss_pred HHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccEEE
Q 016668 244 EKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGM 323 (385)
Q Consensus 244 e~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~GprgG~ 323 (385)
++.+++.++++|+++.+++|...|+++|.++|+++|+++|+|++|+.|+...+....+++..|++++|+||+|+|+++|+
T Consensus 156 ~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~ 235 (407)
T 2dkj_A 156 RRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGL 235 (407)
T ss_dssp HHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEE
T ss_pred HHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCceE
Confidence 99997557899999778889888999999999999999999999987776555443444468999999999999999999
Q ss_pred EEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHh
Q 016668 324 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSA 380 (385)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~ 380 (385)
++++++ ++.+.+.....++..++++...++++..+++......+++..+++.
T Consensus 236 ~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 287 (407)
T 2dkj_A 236 ILSNDP-----ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVV 287 (407)
T ss_dssp EEESCH-----HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred EEECCH-----HHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999843 6777777666566667788888878788887765544444444443
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-24 Score=213.64 Aligned_cols=230 Identities=18% Similarity=0.157 Sum_probs=169.5
Q ss_pred cCChHHH---HHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccC----CCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 016668 85 EADPEVC---EIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRA 157 (385)
Q Consensus 85 ~~dp~~~---~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y----~~g~p~~r~~~G~~~~~~le~~~~~~l 157 (385)
.+++++. +.+++|..+|...++.|+++|. +.|++++.+...... .+||++.++ ..+++| +++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-----g~~~Le----~~l 83 (427)
T 3hvy_A 15 NINERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTNSSGYGYNDI-----GRDSLD----RVY 83 (427)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCTTCH-----HHHHHH----HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcccCcCCCCCch-----hHHHHH----HHH
Confidence 5688877 5567788888899999999998 899999987643222 345554332 245565 468
Q ss_pred HHHcCCCCCCCcceee--cCCcHHHHHHHHHHhccCCCEEeecC-CCCCcccc--CCccccc-cccccCcceEEEEeccc
Q 016668 158 LAAFNLDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLS--HGFMTPK-RRVSGTSIYFESMPYRL 231 (385)
Q Consensus 158 a~lfg~~~~~~~~~V~--~~sGs~A~~~a~~all~pGD~Vl~~~-~~~ggh~s--~~~~~~~-~~~~~~g~~~~~i~~~~ 231 (385)
++++|.+. +.++ ++||+.||..++.++++|||+|++.+ +.|+++.. ++....+ ..+...|..+. .++.
T Consensus 84 A~l~g~e~----alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~--~v~~ 157 (427)
T 3hvy_A 84 ANIFNTES----AFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYK--MVDL 157 (427)
T ss_dssp HHHHTCSE----EEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEE--ECCC
T ss_pred HHHhCCCc----eEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEE--EecC
Confidence 99999987 3444 68999999999999999999999998 77765431 0000000 12234565444 4334
Q ss_pred cCCCCCCCHHHHHHHhhh-cCCcEEEEcC----CCCC--CCCCHHHHHHHHHH--cCcEEEEeccccccccccCcccCCC
Q 016668 232 DESTGLVDYDMLEKTAIL-FRPKLIIAGA----SAYP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPF 302 (385)
Q Consensus 232 ~~~~~~iD~d~le~~i~~-~~pklIi~~~----s~~~--~~~dl~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~ 302 (385)
+++.+|++++++.+++ .++|+|+++. ++++ ...|+++|+++|++ +|+++++|++|..+.. ...|+
T Consensus 158 --~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~----~~~p~ 231 (427)
T 3hvy_A 158 --KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVE----EKEPT 231 (427)
T ss_dssp --BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTS----SSCGG
T ss_pred --CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccccc----CCCCc
Confidence 3678999999999973 4799999987 5655 45689999999999 8999999999966542 13455
Q ss_pred C-CCcEEEECCCccCcc---ccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 303 K-YCDVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 303 ~-gaDiv~~S~hK~l~G---prgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+ ++|++++|+||+|.| ++||+|++++ ++.+++...
T Consensus 232 ~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~------~li~~l~~~ 270 (427)
T 3hvy_A 232 DVGADIIAGSLIKNIGGGIATTGGYIAGKE------EYVTQATFR 270 (427)
T ss_dssp GGTCSEEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHH
T ss_pred ccCCeEEEECCcccccccccceEEEEEECH------HHHHHHHHH
Confidence 5 799999999999977 8899999987 687877663
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=204.45 Aligned_cols=230 Identities=17% Similarity=0.140 Sum_probs=165.7
Q ss_pred CChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhh--ccC--CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHc
Q 016668 86 ADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLT--NKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAF 161 (385)
Q Consensus 86 ~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~--~~y--~~g~p~~r~~~G~~~~~~le~~~~~~la~lf 161 (385)
-..++++.++++..++...++.++++|. +.|++++..... ..+ ++||.+ +....+++|+ ++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~a~~n~--~~Vl~A~~~~~~~~~~~~~~~gy~y-----~~~~~~~Le~----~lA~l~ 86 (427)
T 3i16_A 18 RVLKLYETAMNDIQNQFKILDDIREFNQ--LKVLNAFQEERISEAHFTNSSGYGY-----GDIGRDSLDA----VYARVF 86 (427)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCT-----TCHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHhchhHHhcCCCCCCCC-----CHHHHHHHHH----HHHHHh
Confidence 3446677778888888888999999998 789999875321 111 233433 3333556664 689999
Q ss_pred CCCCCCCcceee--cCCcHHHHHHHHHHhccCCCEEeecC-CCCCccccC-Ccccc--ccccccCcceEEEEeccccCCC
Q 016668 162 NLDENKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSH-GFMTP--KRRVSGTSIYFESMPYRLDEST 235 (385)
Q Consensus 162 g~~~~~~~~~V~--~~sGs~A~~~a~~all~pGD~Vl~~~-~~~ggh~s~-~~~~~--~~~~~~~g~~~~~i~~~~~~~~ 235 (385)
|++. +.++ ++||+.||..++.++++|||+|++.+ +.|+++... +.-.. ...+...|..+ ..++++ ++
T Consensus 87 g~e~----alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~--~~v~~~-~~ 159 (427)
T 3i16_A 87 NTES----ALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINY--KQVDLK-ED 159 (427)
T ss_dssp TCSE----EEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEE--EECCCC-TT
T ss_pred CCcc----eEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEE--EEecCc-cC
Confidence 9987 3444 78999999999999999999999998 777665310 00000 01123346544 444454 35
Q ss_pred CCCCHHHHHHHhhh-cCCcEEEEcC----CCCC--CCCCHHHHHHHHHH--cCcEEEEeccccccccccCcccCCCC-CC
Q 016668 236 GLVDYDMLEKTAIL-FRPKLIIAGA----SAYP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YC 305 (385)
Q Consensus 236 ~~iD~d~le~~i~~-~~pklIi~~~----s~~~--~~~dl~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~~-ga 305 (385)
+.+|++++++.+++ .++|+|+++. ++++ ...|+++|+++|++ +|+++++|++|..+.. ...|++ ++
T Consensus 160 g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~----~~~p~~~ga 235 (427)
T 3i16_A 160 GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMD----TKEPTDVGA 235 (427)
T ss_dssp SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSS----SSCGGGGTC
T ss_pred CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccc----cCCccccCC
Confidence 78999999999973 4789999887 5555 45689999999999 9999999999865532 124555 89
Q ss_pred cEEEECCCccCcc---ccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 306 DVVTTTTHKSLRG---PRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 306 Div~~S~hK~l~G---prgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
|++++|+||++.| ++||+|++++ ++.+++...
T Consensus 236 Div~~S~sK~lgg~g~~~gG~i~~~~------~li~~l~~~ 270 (427)
T 3i16_A 236 DLIAGSLIKNIGGGIAPTGGYLAGTK------DCIEKTSYR 270 (427)
T ss_dssp SEEEEETTSGGGTTTCCSCEEEEECH------HHHHHHHHH
T ss_pred eEEEecCcccCCCCCCceEEEEEECH------HHHHHHHHh
Confidence 9999999999977 8899999987 677777653
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-21 Score=191.61 Aligned_cols=228 Identities=18% Similarity=0.168 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhc--cCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 016668 88 PEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTN--KYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDE 165 (385)
Q Consensus 88 p~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~--~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~ 165 (385)
.++++.++++.+++...++.++..|. ..|++++...... .+. +..+ |.-+....+++|+ .+++++|.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~n~--~~vl~a~~~~~~~~~~~~-~~~~--~~y~~~~~~~Le~----~lA~l~g~e~ 76 (409)
T 3jzl_A 6 QAIRKKVETQIDDLQNKTDEIAEFNQ--AKVLDAFQENKVSDFHFH-PSTG--YGYDDEGRDTLER----VYATVFKTEA 76 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGGC-CCCT--TCTTCHHHHHHHH----HHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHhhhhhhccC-CCcC--CCCChhHHHHHHH----HHHHHhCCCc
Confidence 35677778888888888888888886 7888888765321 111 1111 1113333455554 6889999986
Q ss_pred CCCcceee--cCCcHHHHHHHHHHhccCCCEEeecC-CCCCccccCCcc-c-cccccccCcceEEEEeccccCCCCCCCH
Q 016668 166 NKWGVNVQ--PLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGFM-T-PKRRVSGTSIYFESMPYRLDESTGLVDY 240 (385)
Q Consensus 166 ~~~~~~V~--~~sGs~A~~~a~~all~pGD~Vl~~~-~~~ggh~s~~~~-~-~~~~~~~~g~~~~~i~~~~~~~~~~iD~ 240 (385)
+.++ ++||+.||..++.++++|||+|++.+ +.|++.....-. . ....+...|..+ ..++++ +++.+|+
T Consensus 77 ----alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~--~~v~~~-~~g~~d~ 149 (409)
T 3jzl_A 77 ----ALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGY--SSVPLL-ENGDVDF 149 (409)
T ss_dssp ----EEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEE--EECCCC-TTSCCCH
T ss_pred ----EEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEE--EEeCCC-CCCCcCH
Confidence 3454 78999999999999999999999998 766554210000 0 000223446544 444455 3578999
Q ss_pred HHHHHHhhhcCCcEEEEcC----CCCC--CCCCHHHHHHHHHH--cCcEEEEeccccccccccCcccCCCC-CCcEEEEC
Q 016668 241 DMLEKTAILFRPKLIIAGA----SAYP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT 311 (385)
Q Consensus 241 d~le~~i~~~~pklIi~~~----s~~~--~~~dl~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S 311 (385)
+++++.+++ ++|+|+++. ++++ ...|+++|+++|++ +|+++++|++|..+.. ...+.+ ++|++++|
T Consensus 150 e~l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~----~~~p~~~g~Div~~S 224 (409)
T 3jzl_A 150 PRIAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVE----YQEPPEVGADIIAGS 224 (409)
T ss_dssp HHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTS----SCCSGGGTCSEEEEE
T ss_pred HHHHHhccC-CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccc----cCCccccCCeEEEEC
Confidence 999999965 789999887 5554 45689999999999 9999999999865532 123455 89999999
Q ss_pred CCccCcc---ccEEEEEEeCCCCchhHHHHHHhh
Q 016668 312 THKSLRG---PRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 312 ~hK~l~G---prgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+||++.| +.||+|++++ ++.+++..
T Consensus 225 ~sK~lgg~~~~~GG~v~~~~------~li~~l~~ 252 (409)
T 3jzl_A 225 LIKNPGGGLAKTGGYIAGKE------ALVDLCGY 252 (409)
T ss_dssp TTSGGGTTTCSSCEEEEECH------HHHHHHHH
T ss_pred ccccCCccCCceEEEEEeCH------HHHHHHHH
Confidence 9999976 5689999987 67777755
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=189.78 Aligned_cols=241 Identities=15% Similarity=0.077 Sum_probs=163.0
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+.+.++...+++.|++++...+...+ + ....++.+.+++++++++|++.. +...+.+.+|++|+. +
T Consensus 4 ~~~~~gp~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~~~~~la~~~~~~~~-~~~v~~~~g~t~al~-~ 69 (384)
T 3zrp_A 4 LLLHVGPTTIKEDVLVAGLENNVGFT-----------S-KEFVEALAYSLKGLRYVMGASKN-YQPLIIPGGGTSAME-S 69 (384)
T ss_dssp --CCSSCSCCCHHHHHHTTCCSCCTT-----------S-HHHHHHHHHHHHHHHHHHTCCTT-SEEEEEESCHHHHHH-H
T ss_pred eeccCCCCCCCHHHHHHhhccccccc-----------c-HHHHHHHHHHHHHHHHHhCCCCC-CcEEEEcCCcHHHHH-H
Confidence 45678888999999999876543211 1 12234555578899999999862 112355566778999 9
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-- 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~-- 262 (385)
+.++++|||+|++.++.|.+. .+. ..+...|..+..++ ++. ++.+|++++++.+++.++++|++..+++
T Consensus 70 ~~~~~~~gd~vi~~~~~~~~~---~~~---~~~~~~g~~~~~v~--~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~npt 140 (384)
T 3zrp_A 70 VTSLLKPNDKILVVSNGVFGD---RWE---QIFKRYPVNVKVLR--PSP-GDYVKPGEVEEEVRKSEYKLVALTHVETST 140 (384)
T ss_dssp GGGGCCTTCEEEEECSSHHHH---HHH---HHHTTSSCEEEEEC--CST-TCCCCHHHHHHHHHHSCEEEEEEESEETTT
T ss_pred HHhhcCCCCEEEEecCCcchH---HHH---HHHHHcCCcEEEec--CCC-CCCCCHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 999999999999988754221 110 12245566555444 543 5689999999999776789998876654
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCcccc-EEEEEEeCCCCchhHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gpr-gG~I~~~~~~~~~~~~~~~ 339 (385)
|...|+++|.++|+++|+++|+|++|..|.. +..+. ++|++++|+||+|.|+. .|++++++ ++.++
T Consensus 141 G~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~~ 209 (384)
T 3zrp_A 141 GVREPVKDVINKIRKYVELIVVDGVSSVGAE-----EVKAEEWNVDVYLTASQKALGSAAGLGLLLLSP------KALSI 209 (384)
T ss_dssp TEECCHHHHHHHHGGGEEEEEEECTTTTTTS-----CCCTTTTTCSEEEEETTSTTCCCSSEEEEEECH------HHHHH
T ss_pred ceECcHHHHHHHHHhcCCEEEEECcccccCc-----cccccccCCCEEEecCcccccCCCceEEEEECH------HHHHH
Confidence 4678999999999999999999999976532 22233 68999999999997655 58888877 45444
Q ss_pred H-------------hhcc---------CCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016668 340 I-------------NNAV---------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379 (385)
Q Consensus 340 i-------------~~~~---------fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v 379 (385)
+ .... .....|+++...++++..+++.+...++++..+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 271 (384)
T 3zrp_A 210 LDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRH 271 (384)
T ss_dssp HHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4 1000 11112467888888888888765544344444333
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-21 Score=187.95 Aligned_cols=240 Identities=15% Similarity=0.128 Sum_probs=166.4
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+.+.+....+++.|++++...+...+ +.. ..++.+.+++++++++|.+..+ ..+.+.||+.|+..+
T Consensus 15 ~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~~~~~la~~~~~~~~~--~v~~~~sgt~al~~~ 80 (411)
T 3nnk_A 15 LLMGPGPINADPRVLRAMSSQLIGQY-----------DPA-MTHYMNEVMALYRGVFRTENRW--TMLVDGTSRAGIEAI 80 (411)
T ss_dssp EEESSSCCCCCHHHHHHHTSCCCCTT-----------CHH-HHHHHHHHHHHHHHHHTCCCSE--EEEEESCHHHHHHHH
T ss_pred eeecCCCCCCCHHHHHHhhccccccc-----------cHH-HHHHHHHHHHHHHHHhCCCCCc--EEEECCCcHHHHHHH
Confidence 55667888889999999875432111 112 2244555778999999998642 134455778899999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-- 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~-- 262 (385)
+.++++|||+|++.++.|.+.. +. ..+...|..+..++ ++ +++.+|+++|++.+++.++++|+++.+++
T Consensus 81 ~~~~~~~gd~Vl~~~~~~~~~~---~~---~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~npt 151 (411)
T 3nnk_A 81 LVSAIRPGDKVLVPVFGRFGHL---LC---EIARRCRAEVHTIE--VP-WGEVFTPDQVEDAVKRIRPRLLLTVQGDTST 151 (411)
T ss_dssp HHHHCCTTCEEEEEECSHHHHH---HH---HHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred HHHhcCCCCEEEEecCCchHHH---HH---HHHHHcCCeEEEEe--cC-CCCCCCHHHHHHHHhhCCCeEEEEeCCCCCc
Confidence 9999999999999987553311 10 13345676555555 44 45788999999999765899998876554
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~ 339 (385)
|...|+++|.++|+++|+++++|++|..|.. +..+. ++|++++|+||+|.||.| |++++++ ++.++
T Consensus 152 G~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-----~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~ 220 (411)
T 3nnk_A 152 TMLQPLAELGEICRRYDALFYTDATASLGGN-----PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSA------RMEEA 220 (411)
T ss_dssp TEECCCTTHHHHHHHHTCEEEEECTTTBTTB-----CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECH------HHHHH
T ss_pred ceeccHHHHHHHHHHcCCEEEEECCcccCCc-----ccchhccCCcEEEecCccccCCCCceEEEEECH------HHHHH
Confidence 4577899999999999999999999876532 22232 689999999999877755 8888877 56666
Q ss_pred Hhhcc-----------------------------------CCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 340 INNAV-----------------------------------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 340 i~~~~-----------------------------------fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
+.... .....++++...++++..+++......+++..++
T Consensus 221 ~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 294 (411)
T 3nnk_A 221 IRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIAR 294 (411)
T ss_dssp HHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 65432 0112246778888888888876654333333333
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=186.75 Aligned_cols=240 Identities=10% Similarity=0.083 Sum_probs=165.0
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+.+.++...+++.+++++...... ++ . ....++.+.+++++++++|++.+ + +.+.+.||+.|+..+
T Consensus 13 ~~~~p~p~~~~~~v~~a~~~~~~~----------~~-~-~~~~~~~~~l~~~la~~~g~~~~-~-~~~~~~s~t~al~~~ 78 (416)
T 3isl_A 13 TIMTPGPVEVDPRVLRVMSTPVVG----------QF-D-PAFTGIMNETMEMLRELFQTKNR-W-AYPIDGTSRAGIEAV 78 (416)
T ss_dssp EECSSSSCCCCHHHHHHTTSCCCC----------TT-S-HHHHHHHHHHHHHHHHHTTCCCS-E-EEEEESCHHHHHHHH
T ss_pred eeecCCCcCcCHHHHHHhcccCCC----------Cc-c-HHHHHHHHHHHHHHHHHhCCCCC-c-EEEecCcHHHHHHHH
Confidence 456677788899999987642111 01 1 22235555678899999999874 1 223566788999999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-- 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~-- 262 (385)
+.++++|||+|++.++.|.++. +. ..+...|..+..++ ++ .++.+|++++++.+++.++++|+++.+++
T Consensus 79 ~~~l~~~gd~Vl~~~~~~~~~~---~~---~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~npt 149 (416)
T 3isl_A 79 LASVIEPEDDVLIPIYGRFGYL---LT---EIAERYGANVHMLE--CE-WGTVFDPEDIIREIKKVKPKIVAMVHGETST 149 (416)
T ss_dssp HHHHCCTTCEEEEEESSHHHHH---HH---HHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred HHHhcCCCCEEEEecCCcccHH---HH---HHHHhcCCeeEEEe--cC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCCC
Confidence 9999999999999987543311 10 12345676555555 44 35689999999999755799998876655
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~ 339 (385)
|...|+++|.++|+++|+++++|++|+.|.. +..++ ++|++++|+||++.||.| |+++.++ ++.++
T Consensus 150 G~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~------~~~~~ 218 (416)
T 3isl_A 150 GRIHPLKAIGEACRTEDALFIVDAVATIGGC-----EVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNE------RVADV 218 (416)
T ss_dssp TEECCCHHHHHHHHHTTCEEEEECTTTTTTS-----CCCTTTTTCSEEECCSSSTTCCCSSEEEEEECH------HHHHH
T ss_pred ceecCHHHHHHHHHHcCCEEEEECCccccCC-----CcchhhcCCCEEEecCccccCCCCCeEEEEECH------HHHHH
Confidence 4577899999999999999999999976533 22232 689999999999877765 8888877 56555
Q ss_pred Hhhc-------------------------------------cCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 340 INNA-------------------------------------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 340 i~~~-------------------------------------~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
+... ......++++...++++..+++.....++++..++
T Consensus 219 ~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 294 (416)
T 3isl_A 219 IAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFER 294 (416)
T ss_dssp HHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5421 11112456777888888888876544323444333
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=187.67 Aligned_cols=223 Identities=20% Similarity=0.197 Sum_probs=157.5
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD 193 (385)
.++.+.+++...+.. +..++++.++..|.. .....+++++++++|.+. .+.+++|++|+..++.++++|||
T Consensus 58 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~---~~~~~l~~~la~~~~~~~-----~i~~~sGt~a~~~~l~~~~~~gd 128 (399)
T 3tqx_A 58 DHPALIKTAQTVVEQ-YGFGMASVRFICGTQ---TIHKELEKDISEFLGTDD-----TILYSSCFDANGGLFETLLGPED 128 (399)
T ss_dssp TCHHHHHHHHHHHHH-HCSCCCSCCCCCCCB---HHHHHHHHHHHHHHTCSE-----EEEESCHHHHHHTTHHHHCCTTC
T ss_pred CCHHHHHHHHHHHHH-hCCCCCCcCccccCc---hHHHHHHHHHHHHHCCCc-----EEEECchHHHHHHHHHHhcCCCC
Confidence 369999999877754 545556556555543 222334567889999874 57788999999999999999999
Q ss_pred EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCCC--CCC
Q 016668 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAYP--RDF 266 (385)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~~--~~~ 266 (385)
+|++.++.|+++.. .+...|..+..++ . +|++++++.+++. ++++|+++++++| ...
T Consensus 129 ~v~~~~~~~~~~~~--------~~~~~g~~~~~~~--~------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~ 192 (399)
T 3tqx_A 129 AIISDELNHASIID--------GIRLCKAQRYRYK--N------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIA 192 (399)
T ss_dssp EEEEETTCCHHHHH--------HHHSCCSEEEEEC--T------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEEC
T ss_pred EEEECCcccHHHHH--------HHHHcCCceeEeC--C------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcC
Confidence 99999987765422 3445666444333 2 5778888888653 6889998876554 567
Q ss_pred CHHHHHHHHHHcCcEEEEeccccccccccCcc--cC--C-CCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVV--AD--P-FKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 267 dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~--p-~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
++++|.++|+++|+++|+|++|..|+...... .. . ..+.|++++|+||++.|++||++++++ ++.+.+.
T Consensus 193 ~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~------~~~~~~~ 266 (399)
T 3tqx_A 193 DLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGHK------EIIEWLR 266 (399)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEECH------HHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcCH------HHHHHHH
Confidence 89999999999999999999997665321100 00 1 125689999999999889999999987 5666665
Q ss_pred hccCCC-ccCCChHHHHHHHHHHHHHh
Q 016668 342 NAVFPG-LQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 342 ~~~fp~-~qg~p~~~~iaala~Al~e~ 367 (385)
....+. ..++++...+++...+++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (399)
T 3tqx_A 267 NRSRPYLFSNTVAPVIVATSLKVLELL 293 (399)
T ss_dssp HHCHHHHSSCCCCHHHHHHHHHHHHHH
T ss_pred HhCcceeccCCCcHHHHHHHHHHHHHH
Confidence 432111 23456666777777777655
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=182.34 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=158.0
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceeecCCcHHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTA 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~-~~~~~~~V~~~sGs~A~~~a~~a 187 (385)
++...+++.|.+++...+.+. | + ....++.+.+++++++++|++ .+ ..+.+.+|+.|+..++.+
T Consensus 26 ~~~~~~~~~v~~a~~~~~~~~----------~-~-~~~~~~~~~~~~~la~~~g~~~~~---~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 26 AGPVACFPEVLEIMKVQMFSH----------R-S-KEYRKVHMDTVERLREFLEVEKGE---VLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp SSSCCCCHHHHHHTTSCCCCT----------T-S-HHHHHHHHHHHHHHHHHHTCSSSE---EEEESSCHHHHHHHHHHH
T ss_pred CCCcCCcHHHHHHHhcccccc----------c-C-HHHHHHHHHHHHHHHHHhCCCCCc---EEEEeCChHHHHHHHHHH
Confidence 666778999999987654321 1 1 112456667788999999997 32 234556778899999999
Q ss_pred hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh-cCCcEEEEcCCCC--CC
Q 016668 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAY--PR 264 (385)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~-~~pklIi~~~s~~--~~ 264 (385)
+++|||+|++.++.|.++. +. ..+...|..+..++ +++ ++.+|+++|++.+++ .++++|++..+++ |.
T Consensus 91 l~~~gd~vl~~~~~~~~~~-~~-----~~~~~~g~~~~~v~--~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~ 161 (386)
T 2dr1_A 91 GVSKGGKVLVTIIGAFGKR-YK-----EVVESNGRKAVVLE--YEP-GKAVKPEDLDDALRKNPDVEAVTITYNETSTGV 161 (386)
T ss_dssp HSCTTCEEEEEESSHHHHH-HH-----HHHHHTTCEEEEEE--CCT-TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTE
T ss_pred hhcCCCeEEEEcCCchhHH-HH-----HHHHHhCCceEEEe--cCC-CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcch
Confidence 9999999999988654420 11 12345666544444 543 567999999999853 3789988876554 45
Q ss_pred CCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCcccc-EEEEEEeCCCCchhHHHHHHh
Q 016668 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 265 ~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gpr-gG~I~~~~~~~~~~~~~~~i~ 341 (385)
..|+++|.++|+++|++|++|++|+.|.. +.++. +.|++++|+||+|.+|. .|++++++ ++.+++.
T Consensus 162 ~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~------~~~~~~~ 230 (386)
T 2dr1_A 162 LNPLPELAKVAKEHDKLVFVDAVSAMGGA-----DIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSE------RFLEIAE 230 (386)
T ss_dssp ECCHHHHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCSEEEEETTSTTCCCSSCEEEEECH------HHHHHHT
T ss_pred hCCHHHHHHHHHHcCCeEEEEccccccCc-----cccccccCCcEEEEeccccccCCCceEEEEECH------HHHHHHh
Confidence 78999999999999999999999976532 12233 67999999999998774 49999987 4555542
Q ss_pred h----------------cc-CCCccCCChHHHHHHHHHHHHHhhC
Q 016668 342 N----------------AV-FPGLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 342 ~----------------~~-fp~~qg~p~~~~iaala~Al~e~~~ 369 (385)
. .. .....++++...++++..+++....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 275 (386)
T 2dr1_A 231 KMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEK 275 (386)
T ss_dssp TCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 1 00 0122345677777788888876543
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=185.41 Aligned_cols=240 Identities=12% Similarity=0.063 Sum_probs=164.8
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+.+.+++..+++.|++++...+...| ....+.....+++++++++|++.++ ..+.+.+|+.|+..+
T Consensus 21 ~~~~~g~~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~g~~~~~--~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 21 LLMGPGPSNAPQRVLDAMSRPILGHL------------HPETLKIMDDIKEGVRYLFQTNNIA--TFCLSASGHGGMEAT 86 (393)
T ss_dssp EECSSSCCCCCHHHHHHTTSCCCCTT------------SHHHHHHHHHHHHHHHHHHTCCCSE--EEEESSCHHHHHHHH
T ss_pred EEecCCCCCCCHHHHHHHHhhhccCC------------CHHHHHHHHHHHHHHHHHhCCCCCc--EEEEcCcHHHHHHHH
Confidence 45556777789999999876543211 1222344455778899999997631 124556778899999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-- 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~-- 262 (385)
+.++++|||+|+++++.|.++ .+. ..+...|..+..++ +++ ++.+|++++++.+++.++++|+++.+++
T Consensus 87 ~~~~~~~gd~vl~~~~~~~~~---~~~---~~~~~~g~~~~~v~--~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~npt 157 (393)
T 2huf_A 87 LCNLLEDGDVILIGHTGHWGD---RSA---DMATRYGADVRVVK--SKV-GQSLSLDEIRDALLIHKPSVLFLTQGDSST 157 (393)
T ss_dssp HHHHCCTTCEEEEEESSHHHH---HHH---HHHHHTTCEEEEEE--CCT-TCCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred HHHHhCCCCEEEEECCCcchH---HHH---HHHHHcCCeeEEEe--CCC-CCCCCHHHHHHHHhccCCcEEEEEccCCCc
Confidence 999999999999998865432 110 11233566555554 443 4689999999998654789998876654
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~ 339 (385)
|...|+++|.++|+++|+++++|++|..|.. +..+. +.|++++|+||+|.||.| |++++++ ++.++
T Consensus 158 G~~~~l~~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~------~~~~~ 226 (393)
T 2huf_A 158 GVLQGLEGVGALCHQHNCLLIVDTVASLGGA-----PMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSH------RAVER 226 (393)
T ss_dssp TEECCCTTHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCSEEECCSSSTTCCCSSCEEEEECH------HHHHH
T ss_pred cccCCHHHHHHHHHHcCCEEEEEcccccCCC-----CcchhhcCccEEEECCCcccccCCCeEEEEECH------HHHHH
Confidence 4567899999999999999999999875532 21232 689999999999887766 8888876 67776
Q ss_pred Hhhc---cCC-------------------CccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 340 INNA---VFP-------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 340 i~~~---~fp-------------------~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
+... ..+ ...++++...++++..+++.+...++++..++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 287 (393)
T 2huf_A 227 YKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIAR 287 (393)
T ss_dssp HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 6543 111 11246777888888878876543334333333
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-20 Score=180.97 Aligned_cols=232 Identities=14% Similarity=0.127 Sum_probs=157.7
Q ss_pred ccccccCCC---CCcHHHHHHHhhHhhccCCCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH
Q 016668 104 SLELIASEN---FTSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 179 (385)
Q Consensus 104 ~l~Liasen---~~s~~V~~al~s~l~~~y~~g~p~~r~~~G-~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~ 179 (385)
-+++..+++ .+++.+++++...+.+ +..+++..+|..| .+...+ .++.+++++|++. .+.+++|++
T Consensus 41 ~id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~-----~i~~~sGt~ 110 (384)
T 1bs0_A 41 YLNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQA----LEEELAEWLGYSR-----ALLFISGFA 110 (384)
T ss_dssp EEECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHH----HHHHHHHHHTCSE-----EEEESCHHH
T ss_pred EEEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHH----HHHHHHHHhCCCc-----EEEeCCcHH
Confidence 356655554 4689999999887754 2233444444323 233333 4557888899863 577899999
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEE
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIA 257 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~ 257 (385)
|+..++.++++|||.|++.++.|+++.. .+...|..+..++ .+|++++++.+++. ++++|++
T Consensus 111 a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~~~~~~~--------~~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 111 ANQAVIAAMMAKEDRIAADRLSHASLLE--------AASLSPSQLRRFA--------HNDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHTSSSEEEEEC--------TTCHHHHHHHHHSCCSSCEEEEE
T ss_pred HHHHHHHHhCCCCcEEEEcccccHHHHH--------HHHHcCCCEEEeC--------CCCHHHHHHHHHhcCCCCeEEEE
Confidence 9999999999999999999887654321 3345666544333 25899999988653 2678888
Q ss_pred cCCCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccc-cCc-ccCCCC-CCcEEEECCCccCccccEEEEEEeCCCCc
Q 016668 258 GASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASV-VADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVL 332 (385)
Q Consensus 258 ~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~-~g~-~~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~ 332 (385)
+.+++ |...|+++|.++|+++|+++|+|++|..|... .+. .+..++ +.|++++|+||++. |.||++++++
T Consensus 175 ~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~---- 249 (384)
T 1bs0_A 175 EGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSGAAVLCSS---- 249 (384)
T ss_dssp ESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCCEEEEECH----
T ss_pred eCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccCcEEEeCH----
Confidence 76665 46789999999999999999999999766532 111 111222 57899999999984 8889999976
Q ss_pred hhHHHHHHhhccCCCc-cCCChHHHHHHHHHHHHHhh
Q 016668 333 GVELESAINNAVFPGL-QGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~-qg~p~~~~iaala~Al~e~~ 368 (385)
++.+.+.....+.. ..+++....++...+++.+.
T Consensus 250 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 284 (384)
T 1bs0_A 250 --TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR 284 (384)
T ss_dssp --HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHh
Confidence 56666654321111 12456666666666776654
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-20 Score=178.32 Aligned_cols=200 Identities=17% Similarity=0.077 Sum_probs=142.4
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
.....+++.+.+++...+...+. ++. +.+...++++.+++++++++|++.+ ..+.+.+|++|+..++.++
T Consensus 37 ~~~~~~~~~v~~a~~~~~~~~~~--~~~-----~~~~~~~~~~~l~~~la~~~~~~~~---~i~~~~ggt~a~~~~~~~~ 106 (397)
T 3f9t_A 37 SMCSNVLPITRKIVDIFLETNLG--DPG-----LFKGTKLLEEKAVALLGSLLNNKDA---YGHIVSGGTEANLMALRCI 106 (397)
T ss_dssp CSCCCCCTHHHHHHHHHTTCCTT--SGG-----GBHHHHHHHHHHHHHHHHHTTCTTC---EEEEESCHHHHHHHHHHHH
T ss_pred EecCCCcHHHHHHHHHHHhhcCC--Ccc-----cChhHHHHHHHHHHHHHHHhCCCCC---CEEEecCcHHHHHHHHHHH
Confidence 44555789999999877654332 221 1223457777788999999999874 1355667788999999998
Q ss_pred ccC-------------CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEE
Q 016668 189 LKP-------------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255 (385)
Q Consensus 189 l~p-------------GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklI 255 (385)
.++ ||+|++.++.|.++.. .+...|..+..++ ++ +++.+|++++++.+++.++++|
T Consensus 107 ~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~v 175 (397)
T 3f9t_A 107 KNIWREKRRKGLSKNEHPKIIVPITAHFSFEK--------GREMMDLEYIYAP--IK-EDYTIDEKFVKDAVEDYDVDGI 175 (397)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEETTCCTHHHH--------HHHHHTCEEEEEC--BC-TTSSBCHHHHHHHHHHSCCCEE
T ss_pred HHHHHhhhhhcccCCCCeEEEECCcchhHHHH--------HHHHcCceeEEEe--eC-CCCcCCHHHHHHHHhhcCCeEE
Confidence 776 9999999987655321 3345576555444 55 3578999999999976468888
Q ss_pred EEcCCCC--CCCCCHHHHHHHHHHcCcEEEEecccccccccc-Cc---c---cCCCC---CCcEEEECCCccCccc-cEE
Q 016668 256 IAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SV---V---ADPFK---YCDVVTTTTHKSLRGP-RGG 322 (385)
Q Consensus 256 i~~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~---~---~~p~~---gaDiv~~S~hK~l~Gp-rgG 322 (385)
++..+++ |...|+++|.++|+++|++|++|++|..+.... +. . ..+++ ++|++++|+||++.+| +.|
T Consensus 176 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~~g 255 (397)
T 3f9t_A 176 IGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSG 255 (397)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSSCE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCCce
Confidence 7766655 467899999999999999999999996543311 10 0 01222 6789999999998544 678
Q ss_pred EEEEeCC
Q 016668 323 MIFFKKD 329 (385)
Q Consensus 323 ~I~~~~~ 329 (385)
+++++++
T Consensus 256 ~~~~~~~ 262 (397)
T 3f9t_A 256 GILFKDI 262 (397)
T ss_dssp EEEESSG
T ss_pred EEEEeCH
Confidence 8888765
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=184.18 Aligned_cols=233 Identities=14% Similarity=0.078 Sum_probs=158.3
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-- 188 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-- 188 (385)
...+++.|++++...+.+.+ +++...|..|.. .....+.+++++++++|++.+ ..+.+++|+.++..++.++
T Consensus 35 ~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~~---~v~~~~g~t~al~~~~~~l~~ 108 (406)
T 3cai_A 35 GMLIPDSVATTVSTAFRRSG--ASTVGAHPSARR-SAAVLDAAREAVADLVNADPG---GVVLGADRAVLLSLLAEASSS 108 (406)
T ss_dssp CCCCCHHHHHHHHHHHHHCC--SSSCSSSHHHHH-HHHHHHHHHHHHHHHHTCCGG---GEEEESCHHHHHHHHHHHTGG
T ss_pred cCCCCHHHHHHHHHHHHhcC--CCCCCccHHHHH-HHHHHHHHHHHHHHHhCCCCC---eEEEeCChHHHHHHHHHHHhh
Confidence 34679999999988876433 233323311211 223444467889999999753 2344555667888888887
Q ss_pred -ccCCCEEeecCCCCCccccCCccccccc-cccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CC
Q 016668 189 -LKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PR 264 (385)
Q Consensus 189 -l~pGD~Vl~~~~~~ggh~s~~~~~~~~~-~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~~ 264 (385)
++|||+|+++++.|.++... ... ....|..+..+ +++++++.+|+++|++.+++ ++++|++..+++ |.
T Consensus 109 ~~~~gd~vi~~~~~~~~~~~~-----~~~~~~~~g~~v~~v--~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~ 180 (406)
T 3cai_A 109 RAGLGYEVIVSRLDDEANIAP-----WLRAAHRYGAKVKWA--EVDIETGELPTWQWESLISK-STRLVAVNSASGTLGG 180 (406)
T ss_dssp GGBTTCEEEEETTSCGGGTHH-----HHHHHHHHBCEEEEE--CCCTTTCCCCGGGHHHHCCT-TEEEEEEESBCTTTCB
T ss_pred ccCCCCEEEEcCCccHHHHHH-----HHHHHHhcCCeEEEE--ecCcccCCcCHHHHHHHhCC-CceEEEEeCCcCCccc
Confidence 89999999999877554221 001 01146544444 45545678999999999865 789988876665 56
Q ss_pred CCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccEE-EEEEeCCCCchhHHHHHHh
Q 016668 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGG-MIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 265 ~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~GprgG-~I~~~~~~~~~~~~~~~i~ 341 (385)
..|+++|.++|+++|+++++|++|..|.. +.++. +.|++++|+||++ ||++| ++++++ ++.+++.
T Consensus 181 ~~~l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-g~~~G~~~~~~~------~~~~~l~ 248 (406)
T 3cai_A 181 VTDLRAMTKLVHDVGALVVVDHSAAAPYR-----LLDIRETDADVVTVNAHAWG-GPPIGAMVFRDP------SVMNSFG 248 (406)
T ss_dssp BCCCHHHHHHHHHTTCEEEEECTTTTTTC-----CCCHHHHCCSEEEEEGGGGT-SCSCEEEEESCH------HHHHTSC
T ss_pred cCCHHHHHHHHHHcCCEEEEEcccccCCC-----CCCchhcCCCEEEeehhhhc-CCCcCeEEEEeh------HHHhhcC
Confidence 78999999999999999999999976532 11222 6899999999976 67788 888877 5666664
Q ss_pred hccC-C-------CccCCChHHHHHHHHHHHHHhhC
Q 016668 342 NAVF-P-------GLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 342 ~~~f-p-------~~qg~p~~~~iaala~Al~e~~~ 369 (385)
.... . ...++++...++++..+++....
T Consensus 249 ~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~ 284 (406)
T 3cai_A 249 SVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAA 284 (406)
T ss_dssp CCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHT
T ss_pred CcccCCCCCccccccCCCccHHHHHHHHHHHHHHHH
Confidence 3321 0 11356777788888888876654
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=182.96 Aligned_cols=242 Identities=12% Similarity=0.051 Sum_probs=165.4
Q ss_pred ccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 104 ~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
.+.+.++...+++.|++++...+...+ .....++....++++++++|.+..++ .+++.+|+.|+..
T Consensus 24 ~~~~~p~p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~~~~--v~~~~gg~~al~~ 89 (393)
T 3kgw_A 24 RLLLGPGPSNLAPRVLAAGSLRMIGHM------------QKEMLQIMEEIKQGIQYVFQTRNPLT--LVVSGSGHCAMET 89 (393)
T ss_dssp CEECSSSCCCCCHHHHHHTTCCCCCTT------------SHHHHHHHHHHHHHHHHHHTCCCSEE--EEESCCTTTHHHH
T ss_pred ceeccCCCCCCCHHHHHHhcccccCcc------------cHHHHHHHHHHHHHHHHHhCCCCCcE--EEEeCCcHHHHHH
Confidence 355678888899999999875332111 11123444556788999999976321 3455778889999
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 263 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~ 263 (385)
++.++++|||+|++..+. |+++.+ ...+...|..+..++ ++ .++.+|++++++.+++.++++|+++.+++|
T Consensus 90 ~~~~~~~~gd~vl~~~~~---~~~~~~---~~~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 160 (393)
T 3kgw_A 90 ALFNLLEPGDSFLTGTNG---IWGMRA---AEIADRIGARVHQMI--KK-PGEHYTLQEVEEGLAQHKPVLLFLVHGESS 160 (393)
T ss_dssp HHHHHCCTTCEEEEEESS---HHHHHH---HHHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHhcCCCCCEEEEEeCC---chhHHH---HHHHHHcCCceEEEe--CC-CCCCCCHHHHHHHHhhCCCcEEEEeccCCc
Confidence 999999999999998653 321111 012345676555555 44 345799999999997657999988776654
Q ss_pred --CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 264 --RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 264 --~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
...|+++|.++|+++|++|++|++|+.|.. +..++ +.|++++|+||++.|+.| |++++++ ++.+
T Consensus 161 tG~~~~l~~i~~l~~~~~~~li~De~~~~g~~-----~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~------~~~~ 229 (393)
T 3kgw_A 161 TGVVQPLDGFGELCHRYQCLLLVDSVASLGGV-----PIYMDQQGIDIMYSSSQKVLNAPPGISLISFND------KAKY 229 (393)
T ss_dssp TTEECCCTTHHHHHHHTTCEEEEECTTTTTTS-----CCCTTTTTCCEEEEESSSTTCCCSSCEEEEECH------HHHH
T ss_pred chhhccHHHHHHHHHHcCCEEEEECCccccCc-----ccchhhcCCCEEEecCcccccCCCceeEEEECH------HHHH
Confidence 567899999999999999999999975532 12222 679999999999977665 8888877 5666
Q ss_pred HHhhccCC----------------------CccCCChHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016668 339 AINNAVFP----------------------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379 (385)
Q Consensus 339 ~i~~~~fp----------------------~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v 379 (385)
++.....+ ...++++...++++..+++......+++..+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 292 (393)
T 3kgw_A 230 KVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRH 292 (393)
T ss_dssp HHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66432111 112466778888888888765543344444433
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=184.89 Aligned_cols=253 Identities=15% Similarity=0.161 Sum_probs=167.2
Q ss_pred ccCChHHHHHHHHHHHHhh----h--ccccc----------cCCCC----CcHHHHHHHhhHhhccCCCCCCCCCCCCCc
Q 016668 84 GEADPEVCEIITKEKERQF----K--SLELI----------ASENF----TSRAVMEAVGSCLTNKYSEGLPGKRYYGGN 143 (385)
Q Consensus 84 ~~~dp~~~~~i~~e~~~~~----~--~l~Li----------asen~----~s~~V~~al~s~l~~~y~~g~p~~r~~~G~ 143 (385)
+.+++++++.+++.+.+.. . ++.+- .++++ .+|.+.+++...+. +|..++.+.+.+.|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~-~~~~~~~~~~~~~g~ 102 (409)
T 3kki_A 24 PQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLL-EEQQSLFMSASFLQN 102 (409)
T ss_dssp CCCCHHHHHHHHHHHHHHTTTSTTSSCTTCCCCCCTTSEECCCSCTTCCTTCHHHHHHHHHHHH-SCCCCCCSBGGGGCS
T ss_pred ccchHHHHHHHHHHHHHHhhhccCCCeeeeCCCCCCceEEeeccCccCCcCCHHHHHHHHHHHH-HcCCCCCccccccCC
Confidence 6788999999877655421 1 12221 22332 48999999988775 444344443333342
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcce
Q 016668 144 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY 223 (385)
Q Consensus 144 ~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~ 223 (385)
. ++.+.+++++++++|.+. .+.+++|++|+..++.++++|||.|++.++.|+++.. .+...|..
T Consensus 103 ~---~~~~~l~~~la~~~g~~~-----~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~ 166 (409)
T 3kki_A 103 D---YDKPMIEKRLAKFTGFDE-----CLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWE--------GARYANAQ 166 (409)
T ss_dssp T---TTSCHHHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHH--------HHHHTTCE
T ss_pred c---HHHHHHHHHHHHHhCCCe-----EEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHH--------HHHHcCCe
Confidence 2 122234557888999876 4678999999999999999999999999886654321 33455653
Q ss_pred EEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccc-cCc-cc
Q 016668 224 FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVA-ASV-VA 299 (385)
Q Consensus 224 ~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~-~g~-~~ 299 (385)
+++++ .+|+++|++.+++.++++|+++++++ |...++++|+++|+++|++|++|++|..|... .|. ..
T Consensus 167 --~~~~~------~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~ 238 (409)
T 3kki_A 167 --AHPFM------HNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLL 238 (409)
T ss_dssp --EEEEC------TTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH
T ss_pred --EEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcch
Confidence 33432 26899999999766689999987765 46789999999999999999999999655432 111 00
Q ss_pred --CCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhccCCC-ccCCChHHHHHHHHHHHHHhh
Q 016668 300 --DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPG-LQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 300 --~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~-~qg~p~~~~iaala~Al~e~~ 368 (385)
..+. ..|+++.|+||++.++ ||+++++++ +.+.+.....+. ..++++...+++...+++...
T Consensus 239 ~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~ 304 (409)
T 3kki_A 239 AELGLTREVHFMTASLAKTFAYR-AGAIWCNNE------VNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIE 304 (409)
T ss_dssp HHHTCGGGCSEEEEESSSTTCSS-CEEEEESSS------GGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCCEEEeecchhhCCC-ceEEEECHH------HHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHh
Confidence 1111 5689999999999766 899999885 333332211111 112345566667667776553
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-21 Score=192.58 Aligned_cols=235 Identities=18% Similarity=0.158 Sum_probs=161.0
Q ss_pred ccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhcc-CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC
Q 016668 84 GEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFN 162 (385)
Q Consensus 84 ~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~-y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg 162 (385)
.+..+++.+.++++.+++...++.+..+|. +.|++++....... ...+..+ |.-+... .+.+++++++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~--~~vl~A~~~~~~~~~~~~~~~g--~~y~~~~----~~~l~~~la~~~g 79 (431)
T 3ht4_A 8 GEKIAPIVKEVESQITEVHKRADEVIESNQ--FRVLESFGKHKISDSHFIPTTG--YGYDDIG----RDTLEKVYADVFG 79 (431)
T ss_dssp TTTSHHHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCT--TCCSCHH----HHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhchhhhhcCCCCC--CCCChhh----HHHHHHHHHHHhC
Confidence 344566667777788888888999988884 78888887542111 1111122 1113333 3334567999999
Q ss_pred CCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecC-CCCCccccCCccc--cccccccCcceEEEEeccccCCCCCCC
Q 016668 163 LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD-LPHGGHLSHGFMT--PKRRVSGTSIYFESMPYRLDESTGLVD 239 (385)
Q Consensus 163 ~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~-~~~ggh~s~~~~~--~~~~~~~~g~~~~~i~~~~~~~~~~iD 239 (385)
.+.+. +.++++||+.|+..++.++++|||+|++.+ +.|+++....... ....+...|..+ ..++.++ ++.+|
T Consensus 80 ~~~~~--~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~--~~v~~~~-~~~~d 154 (431)
T 3ht4_A 80 AEAGL--VRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGY--NAVPLTE-GGLVD 154 (431)
T ss_dssp CSEEC--CBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEE--EECCBCT-TSSBC
T ss_pred CCccc--ccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEE--EEeCCCC-CCCcC
Confidence 98641 234567999999999999999999999998 7776543210000 001122346544 4444553 47899
Q ss_pred HHHHHHHhhhcCCcEEEEcC-CCCC-----CCCCHHHHHHHHHH--cCcEEEEeccccccccccCcccCCCC-CCcEEEE
Q 016668 240 YDMLEKTAILFRPKLIIAGA-SAYP-----RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK-YCDVVTT 310 (385)
Q Consensus 240 ~d~le~~i~~~~pklIi~~~-s~~~-----~~~dl~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~ 310 (385)
+++|++.+++ ++|+|+++. ++|| ...|+++|+++|++ +|++|++|++|..+.. . ..++. ++|++++
T Consensus 155 ~e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~-~---~~~~~~g~Di~~~ 229 (431)
T 3ht4_A 155 FEAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE-E---QEPCHVGADLMAG 229 (431)
T ss_dssp HHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS-S---CCGGGTTCSEEEE
T ss_pred HHHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc-C---CCccccCCeEEEc
Confidence 9999999965 789998874 4444 34478999999999 9999999999865532 1 13444 7899999
Q ss_pred CCCccCcc---ccEEEEEEeCCCCchhHHHHHHhh
Q 016668 311 TTHKSLRG---PRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 311 S~hK~l~G---prgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
|+||+|.| +.||++++++ ++.+++..
T Consensus 230 S~sK~lgg~~~~~GG~v~~~~------~li~~l~~ 258 (431)
T 3ht4_A 230 SLIKNPGGGIVKTGGYIVGKE------QYVEACAY 258 (431)
T ss_dssp ETTSGGGTTTCSSCEEEEECH------HHHHHHHH
T ss_pred CccccCCCCCCCceEEEEecH------HHHHHHHH
Confidence 99999866 7899999987 67777755
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=181.27 Aligned_cols=239 Identities=10% Similarity=0.031 Sum_probs=163.3
Q ss_pred ccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHH
Q 016668 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (385)
Q Consensus 106 ~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~ 185 (385)
...++...+++.|++++...+.+. | +. ...++.+.+++++++++|++.+ + ..+.+.+|++|+..++
T Consensus 37 l~~~~~~~~~~~v~~a~~~~~~~~----------~-~~-~~~~~~~~~~~~la~~~g~~~~-~-~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 37 LLGPGPSNAHPSVLQAMNVSPVGH----------L-DP-AFLALMDEIQSLLRYVWQTENP-L-TIAVSGTGTAAMEATI 102 (393)
T ss_dssp ECSSSCCCCCHHHHHHHSSCCCCT----------T-SH-HHHHHHHHHHHHHHHHHTCCCS-C-EEEESSCHHHHHHHHH
T ss_pred eccCCCCCCCHHHHHHHhcccccc----------c-CH-HHHHHHHHHHHHHHHHhCCCCC-c-EEEEeCchHHHHHHHH
Confidence 344667788999999987654321 1 11 1335666678899999999752 1 1244556778999999
Q ss_pred HHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--
Q 016668 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP-- 263 (385)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~-- 263 (385)
.++++|||+|++.++.|.+. ++. ..+...|..+..++ +++ ++.+|+++|++.+++.++++|++..+++|
T Consensus 103 ~~~~~~gd~Vl~~~~~~~~~-~~~-----~~~~~~g~~~~~v~--~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG 173 (393)
T 1vjo_A 103 ANAVEPGDVVLIGVAGYFGN-RLV-----DMAGRYGADVRTIS--KPW-GEVFSLEELRTALETHRPAILALVHAETSTG 173 (393)
T ss_dssp HHHCCTTCEEEEEESSHHHH-HHH-----HHHHHTTCEEEEEE--CCT-TCCCCHHHHHHHHHHHCCSEEEEESEETTTT
T ss_pred HhccCCCCEEEEEcCChhHH-HHH-----HHHHHcCCceEEEe--cCC-CCCCCHHHHHHHHhhCCceEEEEeccCCCcc
Confidence 99999999999998865441 011 12345666555444 543 56899999999986536899988766554
Q ss_pred CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHH
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i 340 (385)
...|+++|.++|+++|+++++|++|..|. .+..+. +.|++++|+||+|.+|.+ |++++++ ++.+++
T Consensus 174 ~~~~l~~i~~l~~~~~~~li~Dea~~~g~-----~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~------~~~~~~ 242 (393)
T 1vjo_A 174 ARQPLEGVGELCREFGTLLLVDTVTSLGG-----VPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSS------RAIEKL 242 (393)
T ss_dssp EECCCTTHHHHHHHHTCEEEEECTTTTTT-----SCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECH------HHHHHH
T ss_pred eeccHHHHHHHHHHcCCEEEEECCccccC-----cCCcccccCccEEEEcCcccccCCCceEEEEECH------HHHHHH
Confidence 56789999999999999999999997542 122233 679999999999977654 8999887 566666
Q ss_pred hhc-----cC-C------------Ccc-CCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 341 NNA-----VF-P------------GLQ-GGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 341 ~~~-----~f-p------------~~q-g~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
... .+ . ... ++++...++++..+++......+++..++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~ 299 (393)
T 1vjo_A 243 QRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQR 299 (393)
T ss_dssp HTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 321 01 0 112 26777778888888876533323333333
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=179.84 Aligned_cols=234 Identities=12% Similarity=0.042 Sum_probs=159.5
Q ss_pred hccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHH
Q 016668 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (385)
Q Consensus 103 ~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~ 182 (385)
...++.+++..+++.|++++...+...+ + +...++.+.+++++++++|++.+ ..+.+.+.||++|+.
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~~~~~la~~~g~~~~-~~~i~~~~ggt~al~ 85 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQVPYFR-----------T-TEFSSTMLENEKFMLEYAKAPEG-SKAVFMTCSSTGSME 85 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSCCCCCS-----------S-HHHHHHHHHHHHHHHHHHTCCTT-CEEEEESSCHHHHHH
T ss_pred CceeecCCCCCCcHHHHHHhcCCCCCCC-----------C-HHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCChhHHHH
Confidence 4577888999999999999876442211 1 12224555577899999999752 112233556789999
Q ss_pred HHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-
Q 016668 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (385)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~- 261 (385)
.++.++++|||+|++.++.+-++ .+. ......|..+..++ .+ .++.+|++++++.++. ++++|+++.++
T Consensus 86 ~~~~~~~~~gd~vi~~~~~~~~~---~~~---~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~n 155 (376)
T 3f0h_A 86 AVVMNCFTKKDKVLVIDGGSFGH---RFV---QLCEIHEIPYVALK--LE-HGKKLTKEKLYEYDNQ-NFTGLLVNVDET 155 (376)
T ss_dssp HHHHHHCCTTCCEEEEESSHHHH---HHH---HHHHHTTCCEEEEE--CC-TTCCCCHHHHHTTTTS-CCCEEEEESEET
T ss_pred HHHHhccCCCCeEEEEeCChhhH---HHH---HHHHHcCCceEEEe--CC-CCCCCCHHHHHHhhcc-CceEEEEecccC
Confidence 99999999999999987633222 110 12334566555555 43 3468999999997754 78999887544
Q ss_pred -CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 262 -~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
+|...|+++|+++|+++|+++++|++|..|.. +..++ ++|++++|+||+|.|+.| |+++.++ ++.
T Consensus 156 ptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~------~~~ 224 (376)
T 3f0h_A 156 STAVLYDTMMIGEFCKKNNMFFVCDCVSAFLAD-----PFNMNECGADVMITGSQKVLACPPGISVIVLAP------RGV 224 (376)
T ss_dssp TTTEECCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEETTTTTCCCSSCEEEEECH------HHH
T ss_pred CcceecCHHHHHHHHHHcCCEEEEEcCccccCc-----cccccccCccEEEecCcccccCCCceEEEEECH------HHH
Confidence 45678999999999999999999999865432 12222 689999999999986655 7877776 566
Q ss_pred HHHhhccCC----------------CccCCChHHHHHHHHHHHHHhhCc
Q 016668 338 SAINNAVFP----------------GLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 338 ~~i~~~~fp----------------~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
+++...... +...++....++++..+++.+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~ 273 (376)
T 3f0h_A 225 ERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKH 273 (376)
T ss_dssp HHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 666532111 123355666667777788765543
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-20 Score=180.63 Aligned_cols=226 Identities=15% Similarity=0.086 Sum_probs=155.7
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
++...+++.|++++...+.+. + +... ......+++++++++|++.+ ..+.+.+|+.|+..++.++
T Consensus 15 ~~~~~~~~~v~~a~~~~~~~~--------~---~~~~-~~~~~~l~~~la~~~g~~~~---~v~~t~g~t~a~~~~~~~~ 79 (392)
T 2z9v_A 15 AGPVNAYPEVLRGLGRTVLYD--------Y---DPAF-QLLYEKVVDKAQKAMRLSNK---PVILHGEPVLGLEAAAASL 79 (392)
T ss_dssp SSCCCCCHHHHHHTTSCCCCT--------T---SHHH-HHHHHHHHHHHHHHTTCSSC---CEEESSCTHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHhcccccc--------c---cHHH-HHHHHHHHHHHHHHhCCCCC---EEEEeCCchHHHHHHHHHh
Confidence 455677899999987654321 1 1121 23333467789999999753 2355567788999999999
Q ss_pred ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh-cCCcEEEEcCCCC--CCC
Q 016668 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGASAY--PRD 265 (385)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~-~~pklIi~~~s~~--~~~ 265 (385)
++|||+|+++++.|.++. +. ..+...|..+..++ +++ ++.+|++++++.+++ .++++|++..+++ |..
T Consensus 80 ~~~gd~Vl~~~~~~~~~~---~~---~~~~~~g~~~~~v~--~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~ 150 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG---FG---YWAKRYSPHLLEIE--VPY-NEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTI 150 (392)
T ss_dssp CCTTCCEEEEESSHHHHH---HH---HHHHHHCSCEEEEE--CCT-TSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEE
T ss_pred cCCCCEEEEecCCcccHH---HH---HHHHHcCCceEEee--CCC-CCCCCHHHHHHHHhcCCCCcEEEEeccCCCCcee
Confidence 999999999987554331 10 11223465555555 443 467999999999853 3689998877665 467
Q ss_pred CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHhh
Q 016668 266 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 266 ~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~~ 342 (385)
.|+++|.++|+++|+++++|++|+.|.. +.++. +.|++++|+||++.||.| |++++++ ++.+++..
T Consensus 151 ~~l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~------~~~~~l~~ 219 (392)
T 2z9v_A 151 NPIDAIGALVSAHGAYLIVDAVSSFGGM-----KTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSE------RAWAKMKA 219 (392)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTBTTB-----SCCGGGGTCSEEEECSSSTTCCCSCCEEEEECH------HHHHHHHT
T ss_pred ccHHHHHHHHHHcCCeEEEEcccccCCc-----ccccccccceEEEecCcccccCCCceeEEEECH------HHHHHhhh
Confidence 8999999999999999999999975432 21232 679999999999888766 8998887 56666643
Q ss_pred cc-------------------CCCccCCChHHHHHHHHHHHHHhhC
Q 016668 343 AV-------------------FPGLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 343 ~~-------------------fp~~qg~p~~~~iaala~Al~e~~~ 369 (385)
.. .....++++...++++..+++.+..
T Consensus 220 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 265 (392)
T 2z9v_A 220 NPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLN 265 (392)
T ss_dssp CTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 10 0112356677777777777776543
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-20 Score=179.89 Aligned_cols=232 Identities=17% Similarity=0.171 Sum_probs=157.6
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHcCC-CCCCCcceeecCCcHHHHHHHHHHh-
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGSPANFEVYTAI- 188 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r-~~~G~~~~~~le~~~~~~la~lfg~-~~~~~~~~V~~~sGs~A~~~a~~al- 188 (385)
...++.|++++...+.+.+ +++... +..+... ......+++++++++|. +.+ ..+.+.+|++|+..++.++
T Consensus 33 ~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~la~~~~~~~~~---~v~~~~g~t~a~~~~~~~~~ 106 (406)
T 1kmj_A 33 AQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQA-TEKMENVRKRASLFINARSAE---ELVFVRGTTEGINLVANSWG 106 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHH-HHHHHHHHHHHHHHTTCSCGG---GEEEESSHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHHH-HHHHHHHHHHHHHHcCCCCCC---eEEEeCChhHHHHHHHHHhh
Confidence 3678999999988876532 223211 1111111 23333467789999998 442 2344556678999999999
Q ss_pred ---ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--C
Q 016668 189 ---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--P 263 (385)
Q Consensus 189 ---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~ 263 (385)
++|||+|++.++.|.+... .+. ..+...|..+..++ ++ +++.+|++++++.+++ ++++|++..+++ |
T Consensus 107 ~~~~~~gd~vl~~~~~~~~~~~-~~~---~~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG 178 (406)
T 1kmj_A 107 NSNVRAGDNIIISQMEHHANIV-PWQ---MLCARVGAELRVIP--LN-PDGTLQLETLPTLFDE-KTRLLAITHVSNVLG 178 (406)
T ss_dssp HHHCCTTCEEEEETTCCGGGTH-HHH---HHHHHHTCEEEEEC--BC-TTSCBCGGGHHHHCCT-TEEEEEEESBCTTTC
T ss_pred hhcCCCCCEEEEecccchHHHH-HHH---HHHHhCCCEEEEEe--cC-CCCCcCHHHHHHHhcc-CCeEEEEeCCCcccc
Confidence 8999999999987655421 110 11234565544444 54 3578999999999865 789998876654 5
Q ss_pred CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHH
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i 340 (385)
...|+++|.++|+++|+++++|++|+.|.. +..+. +.|++++|+||++ ||.| |++++++ ++.+++
T Consensus 179 ~~~~l~~i~~l~~~~~~~li~D~~~~~g~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~------~~~~~~ 246 (406)
T 1kmj_A 179 TENPLAEMITLAHQHGAKVLVDGAQAVMHH-----PVDVQALDCDFYVFSGHKLY-GPTGIGILYVKE------ALLQEM 246 (406)
T ss_dssp CBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECH------HHHHHC
T ss_pred CcCCHHHHHHHHHHcCCEEEEEchhhcCCC-----CCcccccCCCEEEEEchhcc-CCCCcEEEEEeH------HHHhhc
Confidence 678999999999999999999999976532 11222 6899999999988 7776 9999986 677766
Q ss_pred hhccCC---------------------CccCCChHHHHHHHHHHHHHhhC
Q 016668 341 NNAVFP---------------------GLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 341 ~~~~fp---------------------~~qg~p~~~~iaala~Al~e~~~ 369 (385)
...... ...+++....++++..+++.+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 296 (406)
T 1kmj_A 247 PPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSA 296 (406)
T ss_dssp CCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHH
Confidence 533211 11346777888888777776543
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-19 Score=176.18 Aligned_cols=259 Identities=12% Similarity=0.093 Sum_probs=167.9
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
+++..+.+.++..+.+... ....+++...++ .+++.+.+++...+.+. ..+|+.. .|. .++++.+.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~---~g~---~~l~~~la~~l~ 81 (386)
T 1u08_A 10 SKLPQLGTTIFTQMSALAQ-QHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAPM---TGV---QALREAIAQKTE 81 (386)
T ss_dssp CSCCCCCCCHHHHHHHHHH-HTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT---TCC---HHHHHHHHHHHH
T ss_pred hhhhcCCccHHHHHHHHHh-cCCeEEecCCCCCCCCCHHHHHHHHHHHHhh-ccCCCCC---CCC---HHHHHHHHHHHH
Confidence 4455566666655544322 224456654433 35799999998877541 2234431 133 378888888888
Q ss_pred HHcCCCCCCCc-ceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCC
Q 016668 159 AAFNLDENKWG-VNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL 237 (385)
Q Consensus 159 ~lfg~~~~~~~-~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ 237 (385)
+.+|.+.+ .. ..+.+.+|++|+..++.++++|||+|++.+|.|.++.. .+...|..+..++ ++++++.
T Consensus 82 ~~~g~~~~-~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~v~--~~~~~~~ 150 (386)
T 1u08_A 82 RLYGYQPD-ADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGGIVKRMA--LQPPHFR 150 (386)
T ss_dssp HHHSCCCC-TTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEE--CCTTTCC
T ss_pred HHhCCCCC-CCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCCEEEEee--cCcccCc
Confidence 88886421 11 13445566789999999999999999999987755421 2345666554444 5544567
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCC--CCC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCC---C--C-CCc
Q 016668 238 VDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F--K-YCD 306 (385)
Q Consensus 238 iD~d~le~~i~~~~pklIi~~~s~~~--~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p---~--~-gaD 306 (385)
+|+++|++.++. ++++|+++.+++| ... ++++|.++|+++|+++|+|++|. ++...|....+ + . +.|
T Consensus 151 ~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~ 228 (386)
T 1u08_A 151 VDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYE-HINFSQQGHASVLAHPQLRERA 228 (386)
T ss_dssp CCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTT-TCBCCSSCCCCGGGSHHHHTTE
T ss_pred CCHHHHHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEcccc-ccccCCCCCcChhcccCccCcE
Confidence 999999999864 7899888776665 444 37899999999999999999985 34433321111 2 1 568
Q ss_pred EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHh
Q 016668 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 307 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~ 367 (385)
+++.|+||+| +|.|.|++++++ ++.+.+......... +++....+++..+++..
T Consensus 229 i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~ 284 (386)
T 1u08_A 229 VAVSSFGKTYHMTGWKVGYCVAPA------PISAEIRKVHQYLTF-SVNTPAQLALADMLRAE 284 (386)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCH------HHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHC
T ss_pred EEEecchhhcCCcccceEEEEcCH------HHHHHHHHHHHhhcc-CCChHHHHHHHHHHhCC
Confidence 9999999998 467789999886 566666543221112 23334455666677653
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-20 Score=179.11 Aligned_cols=240 Identities=13% Similarity=0.061 Sum_probs=160.3
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCccee-ecCCcHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV-QPLSGSPANFE 183 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V-~~~sGs~A~~~ 183 (385)
+...++...+++.|++++.+.+...| +...+.....+++++++++|.+++. +| .+.+|++|+..
T Consensus 20 ~~~~~~p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~~~---~v~~~~g~t~al~~ 84 (396)
T 2ch1_A 20 IMMGPGPSNCSKRVLTAMTNTVLSNF------------HAELFRTMDEVKDGLRYIFQTENRA---TMCVSGSAHAGMEA 84 (396)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCCCCTT------------CHHHHHHHHHHHHHHHHHHTCCCSC---EEEESSCHHHHHHH
T ss_pred eeecCCCCCCCHHHHHHhccccccCC------------ChhHHHHHHHHHHHHHHHhCCCCCc---EEEECCcHHHHHHH
Confidence 44556666778999999875442211 1222333344677899999997631 34 45567789999
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC-
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY- 262 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~- 262 (385)
++.++++|||+|+++++.|.++. + ...+...|..+..++ ++ .++.+|++++++.+++.++++|++..+++
T Consensus 85 ~~~~~~~~gd~vl~~~~~~~~~~---~---~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~np 155 (396)
T 2ch1_A 85 MLSNLLEEGDRVLIAVNGIWAER---A---VEMSERYGADVRTIE--GP-PDRPFSLETLARAIELHQPKCLFLTHGDSS 155 (396)
T ss_dssp HHHHHCCTTCEEEEEESSHHHHH---H---HHHHHHTTCEEEEEE--CC-TTSCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHHhcCCCCeEEEEcCCcccHH---H---HHHHHHcCCceEEec--CC-CCCCCCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 99999999999999998665431 0 012345676555555 44 35689999999998654789998876654
Q ss_pred -CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 263 -PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 263 -~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
|...|+++|.++|+++|+++|+|++|..|.. +..+. ++|++++|+||++.||.| |++++++ ++.+
T Consensus 156 tG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~------~~~~ 224 (396)
T 2ch1_A 156 SGLLQPLEGVGQICHQHDCLLIVDAVASLCGV-----PFYMDKWEIDAVYTGAQKVLGAPPGITPISISP------KALD 224 (396)
T ss_dssp TTEECCCTTHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCCEEECCCC-CCCCCSSCEEEEECH------HHHH
T ss_pred CceecCHHHHHHHHHHcCCEEEEEccccccCC-----ccchhhcCcCEEEEcCCccccCCCCeEEEEECH------HHHH
Confidence 4567899999999999999999999875422 22233 579999999999877655 8888876 4555
Q ss_pred HHhhc-------c---------C------CCccCCChHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016668 339 AINNA-------V---------F------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379 (385)
Q Consensus 339 ~i~~~-------~---------f------p~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v 379 (385)
.+... . + ....++++...++++..+++......+++..+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 287 (396)
T 2ch1_A 225 VIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRR 287 (396)
T ss_dssp HHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 55321 0 1 1123456666777777788765433344444433
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-20 Score=182.76 Aligned_cols=234 Identities=15% Similarity=0.155 Sum_probs=157.4
Q ss_pred cCCCCCcHHHHHHHhhHhh--ccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLT--NKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~--~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~ 185 (385)
++...+++.|++++...+. +.+ ++|.. .+..+. ...+..+.+++++++++|++.+ ..+++.+|++|+..++
T Consensus 29 ~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~~~la~~~~~~~~---~v~~~~ggt~a~~~a~ 102 (423)
T 3lvm_A 29 SATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFGW-QAEEAVDIARNQIADLVGADPR---EIVFTSGATESDNLAI 102 (423)
T ss_dssp TTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHHH-HHHHHHHHHHHHHHHHHTCCGG---GEEEESSHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchhH-HHHHHHHHHHHHHHHHcCCCCC---eEEEeCChHHHHHHHH
Confidence 4455779999999988776 444 34443 222222 2234455578899999999864 2345566788999999
Q ss_pred HHhcc----CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 186 TAILK----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 186 ~all~----pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
.++++ |||+|++.++.|.++... ...+...|..+..++ +++ ++.+|+++|++.+++ ++++|++..++
T Consensus 103 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~-----~~~~~~~g~~~~~v~--~~~-~~~~d~~~l~~~i~~-~~~~v~~~~~~ 173 (423)
T 3lvm_A 103 KGAANFYQKKGKHIITSKTEHKAVLDT-----CRQLEREGFEVTYLA--PQR-NGIIDLKELEAAMRD-DTILVSIMHVN 173 (423)
T ss_dssp HHHHHHHTTTCCEEEEETTSCHHHHHH-----HHHHHHTTCEEEEEC--CCT-TSCCCHHHHHHHCCT-TEEEEECCSBC
T ss_pred HHHHHhhccCCCEEEECCccchHHHHH-----HHHHHHcCCEEEEec--cCC-CCccCHHHHHHhcCC-CcEEEEEeCCC
Confidence 98874 899999998876554211 011133466544444 553 678999999999965 78888887665
Q ss_pred C--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccEEEEEEeCCCCchhHHH
Q 016668 262 Y--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE 337 (385)
Q Consensus 262 ~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~ 337 (385)
+ |...|+++|.++|+++|++||+|++|+.|.. +..+. +.|++++|+||++.++..|+++++++. .
T Consensus 174 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-----~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~------~ 242 (423)
T 3lvm_A 174 NEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL-----PIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKP------R 242 (423)
T ss_dssp TTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTT------B
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCC-----CcChhhcCCCEEEechHHhcCCCCeEEEEEeccc------c
Confidence 4 4678999999999999999999999866532 22222 679999999996543335888888752 2
Q ss_pred HHHhhccC------CCccCCChHHHHHHHHHHHHHhh
Q 016668 338 SAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 338 ~~i~~~~f------p~~qg~p~~~~iaala~Al~e~~ 368 (385)
+.+..... ....++++...++++..+++.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 279 (423)
T 3lvm_A 243 VRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK 279 (423)
T ss_dssp CCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHH
Confidence 22222111 11234567778888877776553
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-20 Score=176.68 Aligned_cols=235 Identities=13% Similarity=0.051 Sum_probs=158.5
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+.+.++...+++.|++++...+... + +.. .......+++++++++|++.+ ..+.+.+|++|+..+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~~--------~---~~~-~~~~~~~l~~~la~~~g~~~~---~i~~~~g~t~a~~~~ 67 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLHH--------R---TEA-AREVFLKARGLLREAFRTEGE---VLILTGSGTLAMEAL 67 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCCT--------T---SHH-HHHHHHHHHHHHHHHHTCSSE---EEEEESCHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCCc--------c---CHH-HHHHHHHHHHHHHHHhCCCCc---eEEEcCchHHHHHHH
Confidence 4567888899999999998665311 1 112 123334467789999999753 234556778899999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-- 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~-- 262 (385)
+.++++|||+|+++++.|.++. +. ..+...|..+..++ ++ .++.+|++++++ .++|+|++..+++
T Consensus 68 ~~~~~~~gd~vl~~~~~~~~~~---~~---~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~----~~~~~v~~~~~~npt 134 (352)
T 1iug_A 68 VKNLFAPGERVLVPVYGKFSER---FY---EIALEAGLVVERLD--YP-YGDTPRPEDVAK----EGYAGLLLVHSETST 134 (352)
T ss_dssp HHHHCCTTCEEEEEECSHHHHH---HH---HHHHHTTCEEEEEE--CC-TTCCCCTTTSCC----SSCSEEEEESEETTT
T ss_pred HHhccCCCCeEEEEeCCchhHH---HH---HHHHHcCCceEEEe--CC-CCCCCCHHHHhc----cCCcEEEEEEecCCc
Confidence 9999999999999988654432 10 11233566555444 44 346789888876 3789998877665
Q ss_pred CCCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 263 PRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
|...|+++|.++|+++ |+++++|++|..|.. +..+. +.|++++|+||++.||.| |+++++++ +.
T Consensus 135 G~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~------~~ 203 (352)
T 1iug_A 135 GALADLPALARAFKEKNPEGLVGADMVTSLLVG-----EVALEAMGVDAAASGSQKGLMCPPGLGFVALSPR------AL 203 (352)
T ss_dssp TEECCHHHHHHHHHHHCTTCEEEEECTTTBTTB-----CCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHH------HH
T ss_pred ceecCHHHHHHHHHhhCCCCEEEEECCccccCc-----ceeccccCeeEEEecCcccccCCCceeEEEECHH------HH
Confidence 4678999999999999 999999999975532 21232 689999999999888765 88888773 33
Q ss_pred HH-------------HhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016668 338 SA-------------INNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379 (385)
Q Consensus 338 ~~-------------i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v 379 (385)
++ +.........++++...++++..+++.+... +++..+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~ 257 (352)
T 1iug_A 204 ERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALK 257 (352)
T ss_dssp HTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHH
T ss_pred HHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 32 1111011223567777788888888765433 44444433
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.8e-20 Score=176.94 Aligned_cols=229 Identities=14% Similarity=0.173 Sum_probs=157.1
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
++..++++.|++++...+.+.+ ++|...+..+ ....++.+.+++++++++|++.+ ..+.+++|+.|+..++.++
T Consensus 7 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~---~i~~~~g~~~a~~~~~~~~ 80 (382)
T 4hvk_A 7 TSAKPVDERILEAMLPYMTESF--GNPSSVHSYG-FKAREAVQEAREKVAKLVNGGGG---TVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHH-HHHHHHHHHHHHHHHHHTTCTTE---EEEEESSHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHhhc--CCCcccchHH-HHHHHHHHHHHHHHHHHcCCCcC---eEEEECCchHHHHHHHHHh
Confidence 4556789999999998886644 4555433222 22335555678899999999863 1344555667999999998
Q ss_pred c----cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC-
Q 016668 189 L----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP- 263 (385)
Q Consensus 189 l----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~- 263 (385)
+ +|||+|+++++.|.++... ...+...|..+..++ ++ +++.+|+++|++.+++ ++++|++..+++|
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~-----~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~npt 151 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINP-----AKFLQKQGFEVEYIP--VG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEI 151 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHH-----HHHHHHTTCEEEEEC--BC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTT
T ss_pred hhhhcCCCCEEEECCCCcHHHHHH-----HHHHHhcCCEEEEec--cC-CCCCcCHHHHHHHhcc-CceEEEEECCCCCc
Confidence 7 9999999998876554321 011223466555444 55 4678999999999965 7888888776654
Q ss_pred -CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCcccc-EEEEEEeCCCCchhHHHHH
Q 016668 264 -RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGVELESA 339 (385)
Q Consensus 264 -~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gpr-gG~I~~~~~~~~~~~~~~~ 339 (385)
...|+++|.++|+++|+ +++|++|+.|.. +.++. ++|++++|+||++ ||. .|+++++++. .
T Consensus 152 G~~~~~~~i~~l~~~~~~-li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~--------~ 216 (382)
T 4hvk_A 152 GTIQPVEEISEVLAGKAA-LHIDATASVGQI-----EVDVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--------K 216 (382)
T ss_dssp CBBCCHHHHHHHHSSSSE-EEEECTTTBTTB-----CCCHHHHTCSEEEEESGGGT-SCTTCEEEEEETTC--------C
T ss_pred eeeCCHHHHHHHHHHcCE-EEEEhHHhcCCC-----CCCchhcCCCEEEEeHHHhc-CCCceEEEEEcCcc--------C
Confidence 67899999999999999 999999976533 22222 6899999999965 665 4888888751 1
Q ss_pred HhhccCC------CccCCChHHHHHHHHHHHHHh
Q 016668 340 INNAVFP------GLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 340 i~~~~fp------~~qg~p~~~~iaala~Al~e~ 367 (385)
+....+. ...++++...++++..+++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 250 (382)
T 4hvk_A 217 LQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT 250 (382)
T ss_dssp CCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH
T ss_pred cCcccccCCCcCccccCCcCHHHHHHHHHHHHHH
Confidence 1111110 113456777788887777644
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=180.81 Aligned_cols=230 Identities=15% Similarity=0.107 Sum_probs=153.7
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceeecCCcHHHHHHHHHHh
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~--~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
.-.+++.|++++...+.+. ..+|+.. ..++++.+++++++.+|. +.+ ..+.+++|++|+..++.++
T Consensus 38 ~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~---~i~~~~g~~~a~~~~~~~l 105 (391)
T 3dzz_A 38 DFKIAPEIMASMEEKLKVA-AFGYESV--------PAEYYKAVADWEEIEHRARPKED---WCVFASGVVPAISAMVRQF 105 (391)
T ss_dssp SSCCCHHHHHHHHHHHTTC-CCCCBCC--------CHHHHHHHHHHHHHHHSCCCCGG---GEEEESCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcC-cCCCCCC--------CHHHHHHHHHHHHHHhCCCCCHH---HEEECCCHHHHHHHHHHHh
Confidence 3346899999998877542 2233321 246777788899999994 442 2334445578999999999
Q ss_pred ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CC-
Q 016668 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RD- 265 (385)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~- 265 (385)
++|||+|++.++.|.++.. .+...|..+..++++....++.+|++++++.++..++|+|++..+++| ..
T Consensus 106 ~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~ 177 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFYS--------VIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAW 177 (391)
T ss_dssp SCTTCEEEECSSCCHHHHH--------HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCC
T ss_pred CCCCCeEEECCCCcHHHHH--------HHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCccc
Confidence 9999999999987655321 334566654444432122233599999999997457899888777665 34
Q ss_pred --CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-----CCc--EEEECCCccC--ccccEEEEEEeCCCCchh
Q 016668 266 --FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGV 334 (385)
Q Consensus 266 --~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-----gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~ 334 (385)
.++++|.++|+++|+++|+|++|. ++...+..+.++. ..| +++.|+||++ +|.+.|+++++++
T Consensus 178 ~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~----- 251 (391)
T 3dzz_A 178 SEEEVKRIAELCAKHQVLLISDEIHG-DLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNP----- 251 (391)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSH-----
T ss_pred CHHHHHHHHHHHHHCCCEEEEecccc-cccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCH-----
Confidence 468999999999999999999984 4444432222221 257 8899999996 6788899999743
Q ss_pred HHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 335 ELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 335 ~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
++.+.+..........+++...+++...+++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 283 (391)
T 3dzz_A 252 DLRARAEESFFLAGIGEPNLLAIPAAIAAYEE 283 (391)
T ss_dssp HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 67776654422111223444555555556654
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-20 Score=179.91 Aligned_cols=223 Identities=19% Similarity=0.191 Sum_probs=155.0
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G-~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
.++.+++++...+. +|..++.+.+|..| .+..++ .++.+++++|++. .+.+++|+.|+..++.++++||
T Consensus 60 ~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~-----~i~~~sGs~a~~~~~~~~~~~g 129 (401)
T 1fc4_A 60 NHPDLIAAAKAGMD-SHGFGMASVRFICGTQDSHKE----LEQKLAAFLGMED-----AILYSSCFDANGGLFETLLGAE 129 (401)
T ss_dssp TCHHHHHHHHHHHH-HHCSCCCSCHHHHCCBHHHHH----HHHHHHHHHTCSE-----EEEESCHHHHHHTTHHHHCCTT
T ss_pred CCHHHHHHHHHHHH-HhCCCCCCCCcccCCcHHHHH----HHHHHHHHhCCCc-----EEEeCChHHHHHHHHHHHcCCC
Confidence 38999999987764 34334443343322 233333 4557888899873 4778999999999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCC--CCC
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAY--PRD 265 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~--~~~ 265 (385)
|+|++.++.|+++.. .+...|..+. +++ .+|++++++.+++. ++++|+++.+++ |..
T Consensus 130 d~v~~~~~~~~~~~~--------~~~~~g~~~~--~~~------~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~ 193 (401)
T 1fc4_A 130 DAIISDALNHASIID--------GVRLCKAKRY--RYA------NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVI 193 (401)
T ss_dssp CEEEEETTCCHHHHH--------HHHTSCSEEE--EEC------TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEE
T ss_pred CEEEEcchhHHHHHH--------HHHHcCCceE--EEC------CCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCC
Confidence 999999887654321 3445665443 332 25899999988642 689998877655 456
Q ss_pred CCHHHHHHHHHHcCcEEEEeccccccccc-cCcc-c--CCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHH
Q 016668 266 FDYPRMRQIADAVGALLMMDMAHISGLVA-ASVV-A--DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 266 ~dl~~I~~ia~~~ga~livD~ah~~Gli~-~g~~-~--~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i 340 (385)
.++++|.++|+++|+++|+|++|+.|+.. .+.. + ..+. +.|++++|+||++.|+.||++++++ ++.+.+
T Consensus 194 ~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~~------~~~~~l 267 (401)
T 1fc4_A 194 ANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARK------EVVEWL 267 (401)
T ss_dssp CCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECH------HHHHHH
T ss_pred CCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcCH------HHHHHH
Confidence 78999999999999999999999767753 2221 1 1222 5799999999999666699999976 677766
Q ss_pred hhccCCC-ccCCChHHHHHHHHHHHHHhh
Q 016668 341 NNAVFPG-LQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 341 ~~~~fp~-~qg~p~~~~iaala~Al~e~~ 368 (385)
.....+. ..++++....++...+++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 296 (401)
T 1fc4_A 268 RQRSRPYLFSNSLAPAIVAASIKVLEMVE 296 (401)
T ss_dssp HHHCHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred HHhCcCceeCCCCCHHHHHHHHHHHHHHh
Confidence 5533111 133566666777777777653
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=179.68 Aligned_cols=222 Identities=17% Similarity=0.183 Sum_probs=155.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~-~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
.++.|++++...+.. +..++++.++..|. +...++ ++++++++|.+. .+.++||+.||..++.++++||
T Consensus 79 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~G~~~~~~~l----~~~la~~~g~~~-----~i~~~sGs~a~~~al~~l~~~g 148 (427)
T 2w8t_A 79 FDPDVIAAGKEALEK-FGSGTCGSRMLNGTFHDHMEV----EQALRDFYGTTG-----AIVFSTGYMANLGIISTLAGKG 148 (427)
T ss_dssp GCHHHHHHHHHHHHH-HCSCCCSCTTTTCCCHHHHHH----HHHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHH-hCCCCcccccccCCcHHHHHH----HHHHHHHhCCCc-----eEEecCcHHHHHHHHHHhcCCC
Confidence 679999999887754 43456665655564 433344 457888899863 5778999999999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc---CCcEEEEcCCCC--CCCCC
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIAGASAY--PRDFD 267 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~---~pklIi~~~s~~--~~~~d 267 (385)
|.|++..+.|+++.. .+...|..+ +.++ .+|+++|++.+++. ++++|+++++++ |...+
T Consensus 149 d~vl~~~~~h~~~~~--------~~~~~g~~~--~~~~------~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~ 212 (427)
T 2w8t_A 149 EYVILDADSHASIYD--------GCQQGNAEI--VRFR------HNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP 212 (427)
T ss_dssp CEEEEETTCCHHHHH--------HHHHSCSEE--EEEC------TTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC
T ss_pred CEEEECCcccHHHHH--------HHHHcCCee--EEeC------CCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC
Confidence 999999887654321 334556543 3432 36999999998753 678998876654 46778
Q ss_pred HHHHHHHHHHcCcEEEEecccccccccc-Cc-cc--CCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 268 YPRMRQIADAVGALLMMDMAHISGLVAA-SV-VA--DPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 268 l~~I~~ia~~~ga~livD~ah~~Gli~~-g~-~~--~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+++|+++|+++|++||+|++|+.|.... +. .. ..+. ++|++++|+||+| |+.||+++++++ +.+.+..
T Consensus 213 l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~-g~~gG~v~~~~~------l~~~l~~ 285 (427)
T 2w8t_A 213 LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSV-GTVGGFVVSNHP------KFEAVRL 285 (427)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTT-CSCCEEEEECCT------TGGGGGG
T ss_pred HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhh-ccCCCEEEeCHH------HHHHHHH
Confidence 9999999999999999999997665421 11 11 1122 5789999999998 588899999874 4444433
Q ss_pred ccCC-CccCCChHHHHHHHHHHHHHhh
Q 016668 343 AVFP-GLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 343 ~~fp-~~qg~p~~~~iaala~Al~e~~ 368 (385)
...+ ...++++...++++..+++.+.
T Consensus 286 ~~~~~~~~~~~~~~~~aa~~~al~~~~ 312 (427)
T 2w8t_A 286 ACRPYIFTASLPPSVVATATTSIRKLM 312 (427)
T ss_dssp TCHHHHSSCCCCHHHHHHHHHHHHHHT
T ss_pred hcccccccCCCCHHHHHHHHHHHHHHh
Confidence 2111 1123566677777777887664
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-19 Score=175.48 Aligned_cols=257 Identities=13% Similarity=0.023 Sum_probs=167.7
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~l 157 (385)
++++..+++..+..+.+...+...-+++...++. +++.+.+++...+... ..+|+.. .|. .++++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~---~g~---~~l~~~la~~~ 76 (389)
T 1gd9_A 4 SDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKG-LTHYGPN---IGL---LELREAIAEKL 76 (389)
T ss_dssp HHHHHHSCCCHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCCT---TCC---HHHHHHHHHHH
T ss_pred hhHhHhCChhHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhCC-CCCCCCC---CCc---HHHHHHHHHHH
Confidence 4555666665544444433322244566544443 5789999998777542 2234431 233 37887778888
Q ss_pred HHHcCC--CCCCCcc-eeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC
Q 016668 158 LAAFNL--DENKWGV-NVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (385)
Q Consensus 158 a~lfg~--~~~~~~~-~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (385)
.+.+|. +.+ - .+.+.+|++|+..++.++++|||+|++.++.|.++.. .+...|..+..++ ++++
T Consensus 77 ~~~~g~~~~~~---~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~~~ 143 (389)
T 1gd9_A 77 KKQNGIEADPK---TEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGGKPVEVP--TYEE 143 (389)
T ss_dssp HHHHCCCCCTT---TSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTCEEEEEE--CCGG
T ss_pred HHHhCCCCCCC---CeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCCEEEEec--cCCc
Confidence 888895 332 2 3455667889999999999999999999987755421 2345566555555 4432
Q ss_pred -CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCC---CHHHHHHHHHHcCcEEEEeccccccccccCc-ccC--CCC--
Q 016668 235 -TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PFK-- 303 (385)
Q Consensus 235 -~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~--p~~-- 303 (385)
++.+|++++++.+++ ++|+|++..+++| ... ++++|.++|+++|+++|+|++|..+ ...+. .++ .+.
T Consensus 144 ~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~ 221 (389)
T 1gd9_A 144 DEFRLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHF-IYDDARHYSIASLDGM 221 (389)
T ss_dssp GTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BCTTCCCCCGGGSTTC
T ss_pred cCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhc-ccCCCCCCCHhhccCC
Confidence 357899999999865 6888888777665 444 5899999999999999999998644 33332 111 121
Q ss_pred -CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 304 -YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 304 -gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
+.|+++.|+||++ +|.|.|++++++ ++.+++......... +++....++...+++
T Consensus 222 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~ 279 (389)
T 1gd9_A 222 FERTITVNGFSKTFAMTGWRLGFVAAPS------WIIERMVKFQMYNAT-CPVTFIQYAAAKALK 279 (389)
T ss_dssp GGGEEEEEESTTTTTCGGGCCEEEECCH------HHHHHHHHHHTTTTC-SCCHHHHHHHHHHHT
T ss_pred CCCEEEEecChhhcCCcccceEEEEECH------HHHHHHHHHHhhhcc-CCCHHHHHHHHHHHh
Confidence 3578999999998 466789999986 677777654433322 334444444455554
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-20 Score=176.74 Aligned_cols=240 Identities=15% Similarity=0.069 Sum_probs=159.8
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+.+.+++..+++.|++++.+.+.+. + +.. ..+....+++++++++|.+.+ ....+.+.+|++|+..+
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~~--------~---~~~-~~~~~~~l~~~la~~~g~~~~-~~~v~~t~g~t~a~~~~ 68 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRGH--------L---DPE-VLRVNRAIQERLAALFDPGEG-ALVAALAGSGSLGMEAG 68 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCCT--------T---CHH-HHHHHHHHHHHHHHHHCCCTT-CEEEEESSCHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhcccccc--------c---CHH-HHHHHHHHHHHHHHHhCCCCC-CceEEEcCCcHHHHHHH
Confidence 4567888899999999987655321 1 111 224445577889999999611 11234445667899999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-- 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~-- 262 (385)
+.++++ |+|+++++.|.++ .+ ...+...|..+..++ ++ +++.+|++++++.+++.++++|++..+++
T Consensus 69 ~~~~~~--d~vl~~~~~~~~~---~~---~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 137 (353)
T 2yrr_A 69 LANLDR--GPVLVLVNGAFSQ---RV---AEMAALHGLDPEVLD--FP-PGEPVDPEAVARALKRRRYRMVALVHGETST 137 (353)
T ss_dssp HHTCSC--CCEEEEECSHHHH---HH---HHHHHHTTCCEEEEE--CC-TTSCCCHHHHHHHHHHSCCSEEEEESEETTT
T ss_pred HHHhcC--CcEEEEcCCCchH---HH---HHHHHHcCCceEEEe--CC-CCCCCCHHHHHHHHHhCCCCEEEEEccCCCc
Confidence 998887 8999887654432 11 012345566555555 44 35679999999998754789998877665
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~ 339 (385)
|...|+++|.++|+++|+++++|++|..|.. +.++. +.|++++|+||++.||.| |++++++ ++.++
T Consensus 138 G~~~~~~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~------~~~~~ 206 (353)
T 2yrr_A 138 GVLNPAEAIGALAKEAGALFFLDAVTTLGML-----PFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASL------EARKA 206 (353)
T ss_dssp TEECCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHHTCSEEECCTTSTTCCCSSCEEEEECH------HHHHH
T ss_pred ceecCHHHHHHHHHHcCCeEEEEcCcccccc-----cccccccCceEEEecCcccccCCCceEEEEECH------HHHHH
Confidence 4578999999999999999999999964422 22233 679999999999887665 8999887 45554
Q ss_pred Hhh------------c-c-CCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016668 340 INN------------A-V-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379 (385)
Q Consensus 340 i~~------------~-~-fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v 379 (385)
+.. . . .....++++...++++..+++.+....+++..+++
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 260 (353)
T 2yrr_A 207 FTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRA 260 (353)
T ss_dssp CCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 431 0 0 01123466777777777777765433344443333
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-20 Score=176.89 Aligned_cols=231 Identities=16% Similarity=0.093 Sum_probs=152.6
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+++.++...+++.|++++.+.+. + + + + .........+++++++++|. ..++...+.+.+|++|+..+
T Consensus 6 ~~~~~gp~~~~~~v~~a~~~~~~------~---~-~-~-~~~~~~~~~l~~~la~~~g~-~~~~~~v~~~~g~t~a~~~~ 72 (366)
T 1m32_A 6 LLLTPGPLTTSRTVKEAMLFDSC------T---W-D-D-DYNIGVVEQIRQQLTALATA-SEGYTSVLLQGSGSYAVEAV 72 (366)
T ss_dssp EECSSSSCCCCHHHHHTTCCCCC------T---T-S-H-HHHTTTHHHHHHHHHHHHCS-SSSEEEEEEESCHHHHHHHH
T ss_pred ccccCCCcCCCHHHHHHHhhhhc------C---C-C-H-HHHHHHHHHHHHHHHHHhCC-CCcCcEEEEecChHHHHHHH
Confidence 56666667789999999875321 1 1 1 1 11101222356678899993 22111245566778899999
Q ss_pred HHHhccCCCEEeecC-CCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-CCcEEEEcCCCC
Q 016668 185 YTAILKPHDRIMGLD-LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGASAY 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~-~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-~pklIi~~~s~~ 262 (385)
+.++++|||+|++.+ +.|++... ..+...|..+..++ ++ +++.+|++++++.+++. ++++|++..+++
T Consensus 73 ~~~~~~~gd~vi~~~~~~~~~~~~-------~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~n 142 (366)
T 1m32_A 73 LGSALGPQDKVLIVSNGAYGARMV-------EMAGLMGIAHHAYD--CG-EVARPDVQAIDAILNADPTISHIAMVHSET 142 (366)
T ss_dssp HHHSCCTTCCEEEEESSHHHHHHH-------HHHHHHTCCEEEEE--CC-TTSCCCHHHHHHHHHHCTTCCEEEEESEET
T ss_pred HHHhcCCCCeEEEEeCCCccHHHH-------HHHHHhCCceEEEe--CC-CCCCCCHHHHHHHHhcCCCeEEEEEecccC
Confidence 999999999988765 33322110 12234565555555 44 35679999999999764 578887766555
Q ss_pred --CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 263 --PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 263 --~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
|...|+++|.++|+++|+++++|++|+.|.. +..+. +.|++++|+||++.||.| |++++++ ++.
T Consensus 143 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-----~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~------~~~ 211 (366)
T 1m32_A 143 TTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI-----PMDIAALHIDYLISSANKCIQGVPGFAFVIARE------QKL 211 (366)
T ss_dssp TTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEH------HHH
T ss_pred CcceecCHHHHHHHHHHcCCEEEEECCccccCc-----CccccccCccEEEecCcccccCCCceEEEEECH------HHH
Confidence 5678999999999999999999999975532 22233 589999999999978766 9999987 455
Q ss_pred HHHhhccCC----------------C-ccCCChHHHHHHHHHHHHHhhC
Q 016668 338 SAINNAVFP----------------G-LQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 338 ~~i~~~~fp----------------~-~qg~p~~~~iaala~Al~e~~~ 369 (385)
+++.....+ + ..++++...++++..+++.+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 260 (366)
T 1m32_A 212 AACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK 260 (366)
T ss_dssp TTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 544321100 1 1235677777777778876544
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=176.54 Aligned_cols=233 Identities=15% Similarity=0.180 Sum_probs=154.6
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all 189 (385)
+...+++.|++++...+.+.+ ++++..|..+.. .......+++++++++|++.+ ..+.+.+|+.|+..++.++.
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~l~ 81 (382)
T 4eb5_A 8 SAKPVDERILEAMLPYMTESF--GNPSSVHSYGFK-AREAVQEAREKVAKLVNGGGG---TVVFTSGATEANNLAIIGYA 81 (382)
T ss_dssp TCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHHH-HHHHHHHHHHHHHHHHTCTTE---EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcc--CCCCCCcHHHHH-HHHHHHHHHHHHHHHhCCCCC---eEEEcCchHHHHHHHHHHHH
Confidence 445789999999998876533 344433332222 223444577889999999753 23455667889999999987
Q ss_pred ----cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--C
Q 016668 190 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--P 263 (385)
Q Consensus 190 ----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~ 263 (385)
+|||+|+++++.|.++... ...+...|..+..++ ++ +++.+|+++|++.+++ ++|+|++..+++ |
T Consensus 82 ~~~~~~gd~Vl~~~~~~~~~~~~-----~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG 152 (382)
T 4eb5_A 82 MRNARKGKHILVSAVEHMSVINP-----AKFLQKQGFEVEYIP--VG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEIG 152 (382)
T ss_dssp HHHGGGCCEEEEETTCCHHHHHH-----HHHHTTTTCEEEEEC--BC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTTC
T ss_pred hhccCCCCEEEECCCcchHHHHH-----HHHHHhCCcEEEEec--cC-CCCccCHHHHHHHhcC-CCeEEEEeccCCCcc
Confidence 8999999999876543211 011123566544444 55 3578999999999865 689888877665 4
Q ss_pred CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHH
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i 340 (385)
...|+++|.++|+++|++ ++|++|..|.. +..+. +.|++++|+||+ .||.| |+++++++. .+...+
T Consensus 153 ~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~-----~~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~----~l~~~~ 221 (382)
T 4eb5_A 153 TIQPVEEISEVLAGKAAL-HIDATASVGQI-----EVDVEKIGADMLTISSNDI-YGPKGVGALWIRKEA----KLQPVI 221 (382)
T ss_dssp BBCCHHHHHHHHTTSSEE-EEECTTTBTTB-----CCCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTC----CCCCSS
T ss_pred ccCCHHHHHHHHHHCCCE-EEEcchhcCCc-----ccCccccCCCEEEeehHHh-cCCCceEEEEEcccc----ccCcee
Confidence 678999999999999999 99999975422 11222 679999999997 56764 888888751 011000
Q ss_pred hhc--cCCCccCCChHHHHHHHHHHHHHhh
Q 016668 341 NNA--VFPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 341 ~~~--~fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
... ......++++...++++..+++.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 251 (382)
T 4eb5_A 222 LGGGQENGLRSGSENVPSIVGFGKAAEITA 251 (382)
T ss_dssp CSSCTGGGTSCSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCccccccCCCccHHHHHHHHHHHHHHH
Confidence 000 0001234566777777777776543
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-20 Score=179.75 Aligned_cols=230 Identities=11% Similarity=-0.001 Sum_probs=150.3
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCC--CCCCCCCcHHHHHHHHHHHHH-HHHHcCCCCCCCcceeecCCcHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLP--GKRYYGGNEYIDELETLCQKR-ALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p--~~r~~~G~~~~~~le~~~~~~-la~lfg~~~~~~~~~V~~~sGs~A~~~a~ 185 (385)
.+...+++.|++++...+......++. ....+... .....++++ +++++|.+ . .+.+++|+.|+..++
T Consensus 16 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~la~~~~~~-~----v~~~~g~t~a~~~~~ 86 (371)
T 2e7j_A 16 QTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKT----PPIHDFIHNQLPKFLGCD-V----ARVTNGAREAKFAVM 86 (371)
T ss_dssp HHTCCCCHHHHHHHHHC------------------------CCHHHHHHTHHHHHTTSS-E----EEEESSHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHH----HHHHHHHHHHHHHHcCCC-E----EEEeCChHHHHHHHH
Confidence 446778999999998776543211111 00001111 122235568 89999987 2 244445578999999
Q ss_pred HHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh----cCCcEEEEcCCC
Q 016668 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL----FRPKLIIAGASA 261 (385)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~----~~pklIi~~~s~ 261 (385)
.++++|||+|++.++.|.++.. .+...|..+..++++++ +++.+|+++|++.++. .++++|++..++
T Consensus 87 ~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~ 157 (371)
T 2e7j_A 87 HSLAKKDAWVVMDENCHYSSYV--------AAERAGLNIALVPKTDY-PDYAITPENFAQTIEETKKRGEVVLALITYPD 157 (371)
T ss_dssp HHHCCTTCEEEEETTCCHHHHH--------HHHHTTCEEEEECCCCT-TTCCCCHHHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred HHHhCCCCEEEEccCcchHHHH--------HHHHcCCeEEEeecccC-CCCCcCHHHHHHHHHhhcccCCeEEEEEECCC
Confidence 9999999999999987654421 24456765555542244 3478999999999863 368898887766
Q ss_pred C--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccc-cEEEEEEeCCCCchhHH
Q 016668 262 Y--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGP-RGGMIFFKKDPVLGVEL 336 (385)
Q Consensus 262 ~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gp-rgG~I~~~~~~~~~~~~ 336 (385)
+ |...|+++|.++|+++|+++++|++|+.|.. +..+. +.|++++|+||++.+| ++|+++++++ +
T Consensus 158 nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~------~ 226 (371)
T 2e7j_A 158 GNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM-----PVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE------W 226 (371)
T ss_dssp TTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTB-----CCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT------T
T ss_pred CCCcccCCHHHHHHHHHHcCCeEEEECccccCCC-----CCChhhcCCCEEEecCCcCCCCCCCcEEEEEech------h
Confidence 5 4678999999999999999999999976532 11122 6799999999998665 6699999884 4
Q ss_pred HHH-HhhccCCCc------cCCChHHHHHHHHHHHHHh
Q 016668 337 ESA-INNAVFPGL------QGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 337 ~~~-i~~~~fp~~------qg~p~~~~iaala~Al~e~ 367 (385)
.++ +......+. .++++...++++..+++.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 264 (371)
T 2e7j_A 227 AEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV 264 (371)
T ss_dssp TTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH
T ss_pred hhhhccccccCcccccccccCCcCHHHHHHHHHHHHHH
Confidence 344 433222111 3456666777776777654
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=177.32 Aligned_cols=236 Identities=14% Similarity=0.118 Sum_probs=159.0
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~l 157 (385)
++++..+++.++..+.+... ....++|...++. +++.+.+++...+.+. ..+|+.. .|. .++++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~---~g~---~~l~~~la~~~ 75 (411)
T 2o0r_A 4 VSRLRPYATTVFAEMSALAT-RIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-VNQYPPG---PGS---APLRRAIAAQR 75 (411)
T ss_dssp CGGGGGGSSCHHHHHHHHHH-TTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT---TCC---HHHHHHHHHHH
T ss_pred hhHhHhcCccHHHHHHHHhh-cCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-CCCCCCC---CCC---HHHHHHHHHHH
Confidence 45666777777766654322 2244666544433 5799999998887542 2244431 233 37888888888
Q ss_pred HHHcCCCCCCCc-ceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC--
Q 016668 158 LAAFNLDENKWG-VNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-- 234 (385)
Q Consensus 158 a~lfg~~~~~~~-~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-- 234 (385)
.+.+|.+.+ .. ..+.+.+|++|+..++.++++|||+|++.++.|.++.. .+...|..+..++ ++++
T Consensus 76 ~~~~g~~~~-~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~--------~~~~~g~~~~~v~--~~~~~~ 144 (411)
T 2o0r_A 76 RRHFGVDYD-PETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP--------VVAMAGAHRVTVP--LVPDGR 144 (411)
T ss_dssp HHHHCCCCC-TTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEE--CEEETT
T ss_pred HHHcCCCCC-CCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCCEEEEee--cccccc
Confidence 888886421 10 12444556779999999999999999999987765421 3345676555555 4322
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCC---C---C
Q 016668 235 TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---F---K 303 (385)
Q Consensus 235 ~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p---~---~ 303 (385)
++.+|+++|++.++. ++++|+++.+++| ...+ +++|.++|+++|++||+|++|.. +...|..+.+ + .
T Consensus 145 ~~~~d~~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~ 222 (411)
T 2o0r_A 145 GFALDADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEH-LVFDHARHLPLAGFDGMA 222 (411)
T ss_dssp EEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCTTCCCCCGGGSTTTG
T ss_pred CCCCCHHHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCcChhhccCCC
Confidence 346999999999864 7899888776655 4444 58999999999999999999854 3333321111 2 1
Q ss_pred CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 304 YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 304 gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+.|++++|+||++ +|.|.|++++++ ++.+.+..
T Consensus 223 ~~~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~ 257 (411)
T 2o0r_A 223 ERTITISSAAKMFNCTGWKIGWACGPA------ELIAGVRA 257 (411)
T ss_dssp GGEEEEEEHHHHTTCTTTCEEEEECCH------HHHHHHHH
T ss_pred CCEEEEeechhhcCCccceEEEEeeCH------HHHHHHHH
Confidence 4689999999998 567889999976 56666544
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-20 Score=182.42 Aligned_cols=204 Identities=9% Similarity=0.082 Sum_probs=147.4
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHH-HHHcC-CCCCCCcceeecCCcHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA-LAAFN-LDENKWGVNVQPLSGSPANF 182 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~l-a~lfg-~~~~~~~~~V~~~sGs~A~~ 182 (385)
|.+..++-.+++.+++++...+.+.. +....+..+++|+ .+ ++++| .++ .|.++|||.|+.
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~~~--------~~~~~~~~~~l~~----~~~a~~~g~~~~-----~v~~~sgt~al~ 67 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDASHI--------YTNYGPINQRFEQ----TIMSGFFQNRGA-----VTTVANATLGLM 67 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHHTC--------CSSSCHHHHHHHH----HHHHHTSTTCSE-----EEEESCHHHHHH
T ss_pred eeccCCCCCCcHHHHHHHHHHHHcCC--------cccCCHHHHHHHH----HHHHHHhCCCCe-----EEEeCCHHHHHH
Confidence 55656677778888999887775432 1111244556665 57 88999 443 477899999999
Q ss_pred HHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcC--CcEEEEcC
Q 016668 183 EVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGA 259 (385)
Q Consensus 183 ~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~--pklIi~~~ 259 (385)
.++.++ ++|||+|+++++.|.++.. .+...|..+. .++++++++.+|++++++.+...+ +|+|+..+
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~~~~--------~~~~~G~~~~--~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~ 137 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPATPL--------AAIWCGLEPY--FIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYA 137 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTHHHH--------HHHHTTCEEE--EECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBC
T ss_pred HHHHHcCCCCcCEEEECCCCcHHHHH--------HHHHcCCEEE--EEecCCccCCcCHHHHHHHHhcCCCCceEEEEEC
Confidence 999998 9999999999987755421 3446676544 444665678999999999883335 88887543
Q ss_pred CCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC-C-CCcEEEEC--CCccCccccEEEEEEeCCCCchhH
Q 016668 260 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K-YCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVE 335 (385)
Q Consensus 260 s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~-~-gaDiv~~S--~hK~l~GprgG~I~~~~~~~~~~~ 335 (385)
.++...|+++|.++|+ +|++|++|++|+.|....+. ++ . .+|+.++| .||++.++.||+++++++ +
T Consensus 138 -~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~---~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~-----~ 207 (377)
T 3ju7_A 138 -TFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGM---HYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNE-----E 207 (377)
T ss_dssp -GGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTE---ETTTTCSSEEEEECBTTSSSCCBSCEEEEESCH-----H
T ss_pred -CCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCE---eccCCCCcEEEEECCCCCcCCCCCcEEEEECCH-----H
Confidence 3577889999999999 99999999999877654332 22 1 35766655 579998788999999876 6
Q ss_pred HHHHHhhccC
Q 016668 336 LESAINNAVF 345 (385)
Q Consensus 336 ~~~~i~~~~f 345 (385)
+.+++.....
T Consensus 208 l~~~~~~~~~ 217 (377)
T 3ju7_A 208 DIQRIKRMGN 217 (377)
T ss_dssp HHHHHHHHTB
T ss_pred HHHHHHHHHh
Confidence 7777665433
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=176.13 Aligned_cols=236 Identities=13% Similarity=0.126 Sum_probs=159.3
Q ss_pred hccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceeecCCcH
Q 016668 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGS 178 (385)
Q Consensus 103 ~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg--~~~~~~~~~V~~~sGs 178 (385)
.-+++...++ .+++.|.+++...+.+. ..+|+. +. .++++.+++++++++| ++.+ ..+.+++|+
T Consensus 33 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~~---~~~~~~l~~~l~~~~g~~~~~~---~v~~~~g~~ 100 (391)
T 4dq6_A 33 DLLPMWVADMDFKAAPCIIDSLKNRLEQE-IYGYTT-----RP---DSYNESIVNWLYRRHNWKIKSE---WLIYSPGVI 100 (391)
T ss_dssp CSEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCBC-----CC---HHHHHHHHHHHHHHHCCCCCGG---GEEEESCHH
T ss_pred CceeccccCCCCCCCHHHHHHHHHHHhCC-CCCCCC-----CC---HHHHHHHHHHHHHHhCCCCcHH---HeEEcCChH
Confidence 3355554444 45799999998877542 222322 22 3677778889999999 4443 234455667
Q ss_pred HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecc-ccCCCCCCCHHHHHHHhhhcCCcEEEE
Q 016668 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR-LDESTGLVDYDMLEKTAILFRPKLIIA 257 (385)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~-~~~~~~~iD~d~le~~i~~~~pklIi~ 257 (385)
+|+..++.++++|||+|++.++.|.++.. .+...|..+..++++ .++.++.+|++++++.+++ +++|++
T Consensus 101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i 170 (391)
T 4dq6_A 101 PAISLLINELTKANDKIMIQEPVYSPFNS--------VVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFIL 170 (391)
T ss_dssp HHHHHHHHHHSCTTCEEEECSSCCTHHHH--------HHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCHHHHH--------HHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEE
Confidence 79999999999999999999987655421 234566654444432 1122346999999999965 888888
Q ss_pred cCCCCC--CC---CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCc-----EEEECCCccC--ccccEEE
Q 016668 258 GASAYP--RD---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD-----VVTTTTHKSL--RGPRGGM 323 (385)
Q Consensus 258 ~~s~~~--~~---~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaD-----iv~~S~hK~l--~GprgG~ 323 (385)
..+++| .. .++++|+++|+++|+++|+|++|. ++...|..+.++. ..| +++.|+||++ +|.+.|+
T Consensus 171 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 249 (391)
T 4dq6_A 171 CNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHS-DIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSY 249 (391)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEE
T ss_pred ECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeecccc-ccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEE
Confidence 777665 33 358899999999999999999984 4444443222332 222 7899999997 6778899
Q ss_pred EEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 324 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
++++++ ++.+.+.........++++....++...++++
T Consensus 250 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 287 (391)
T 4dq6_A 250 VVLPDE-----KDYKLLDDAFTRIDIKRNNCFSLVATEASYNN 287 (391)
T ss_dssp EECCSH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred EEeCCH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Confidence 998874 56666655433333445666666666667765
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=176.51 Aligned_cols=235 Identities=15% Similarity=0.165 Sum_probs=156.8
Q ss_pred ccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceeecCCcHH
Q 016668 104 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLSGSP 179 (385)
Q Consensus 104 ~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg--~~~~~~~~~V~~~sGs~ 179 (385)
-+++..+++ .+++.|.+++...+.+. ..+|+. + ..++++.+.+++.+.+| ++.+ ..+.+.+|++
T Consensus 33 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~---~v~~t~g~~~ 100 (399)
T 1c7n_A 33 VVPLSVADMEFKNPPELIEGLKKYLDET-VLGYTG-----P---TEEYKKTVKKWMKDRHQWDIQTD---WIINTAGVVP 100 (399)
T ss_dssp CCCCCSSSCSSCCCHHHHHHHHHHHHHC-CCSSBC-----C---CHHHHHHHHHHHHHHHCCCCCGG---GEEEESSHHH
T ss_pred ceeeeecCCCCCCCHHHHHHHHHHHhcC-CCCCCC-----C---cHHHHHHHHHHHHHHhCCCCChh---hEEEcCCHHH
Confidence 355554444 35899999998877532 223332 2 34788878888888888 4442 2344455577
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC--CCCCHHHHHHHhhhcCCcEEEE
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST--GLVDYDMLEKTAILFRPKLIIA 257 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~--~~iD~d~le~~i~~~~pklIi~ 257 (385)
|+..++.++++|||+|++.+|.|.++.. .+...|..+. .+++++++ +.+|+++|++.++..++++|++
T Consensus 101 a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~--~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 101 AVFNAVREFTKPGDGVIIITPVYYPFFM--------AIKNQERKII--ECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp HHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHTTTCEEE--ECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCCEEE--ecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 9999999999999999999987655421 2345566444 44443122 3599999999997447899888
Q ss_pred cCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-------CCcEEEECCCccC--ccccEEE
Q 016668 258 GASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPRGGM 323 (385)
Q Consensus 258 ~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-------gaDiv~~S~hK~l--~GprgG~ 323 (385)
..+++| ...+ +++|+++|+++|++||+|++|.. +...+..+.++. ..++++.|+||++ +|.|.|+
T Consensus 171 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 249 (399)
T 1c7n_A 171 CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFD-LIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSN 249 (399)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEE
T ss_pred cCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEE
Confidence 777665 4566 89999999999999999999853 333332222221 2347899999997 6778899
Q ss_pred EEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 324 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
++++++ ++.+.+.....+...++++....++...++++
T Consensus 250 ~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~ 287 (399)
T 1c7n_A 250 IIIKNP-----DIRERFTKSRDATSGMPFTTLGYKACEICYKE 287 (399)
T ss_dssp EECCCH-----HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred EEECCH-----HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhC
Confidence 998753 57776655433333334555555555666654
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-19 Score=182.28 Aligned_cols=249 Identities=12% Similarity=0.016 Sum_probs=165.8
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC--CCCCcceeecCCcHHHHHHHHHHh
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~--~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
..++++.+.+++.+.+...+. ++ ...+...++|+.+++++++++|++ .++....+.+++|++||+.++.++
T Consensus 65 t~~~~~~v~~~l~~~~~~~~~--~~-----~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~ 137 (502)
T 3hbx_A 65 TTWMEPECDKLIMSSINKNYV--DM-----DEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAF 137 (502)
T ss_dssp CCCCCHHHHHHHHHTTTCBTT--CT-----TTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhccCCC--Ch-----hcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHH
Confidence 356789999999877654332 11 233456789999999999999998 332223345678889999998888
Q ss_pred ccC--------CC-----EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEE
Q 016668 189 LKP--------HD-----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLI 255 (385)
Q Consensus 189 l~p--------GD-----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklI 255 (385)
.++ || +|++.++.|. ++. +.+...|..+..++ ++++++.+|+++|++.+++ +|++|
T Consensus 138 ~~~~~~~~~~~G~~~~~~~vi~~~~~h~---s~~-----~~~~~~G~~~~~v~--~~~~~~~~d~~~l~~~i~~-~t~~v 206 (502)
T 3hbx_A 138 KRKWQNKRKAEGKPVDKPNIVTGANVQV---CWE-----KFARYFEVELKEVK--LSEGYYVMDPQQAVDMVDE-NTICV 206 (502)
T ss_dssp HHHHHHHHHHTTCCCSCCEEEEETTCCH---HHH-----HHHHHTTCEEEEEC--CBTTBCSCCHHHHHHHCCT-TEEEE
T ss_pred HHHHhHHHHhcCCCCCCcEEEEcCCchH---HHH-----HHHHHcCceeEEEe--cCCCcCcCCHHHHHHHHhh-CCEEE
Confidence 665 87 8988876543 321 23456777655555 5544589999999999975 68888
Q ss_pred EEcCCC--CCCCCCHHHHHHHHHHc------CcEEEEecccccccc--ccCcccCCC--CCCcEEEECCCccCccccE-E
Q 016668 256 IAGASA--YPRDFDYPRMRQIADAV------GALLMMDMAHISGLV--AASVVADPF--KYCDVVTTTTHKSLRGPRG-G 322 (385)
Q Consensus 256 i~~~s~--~~~~~dl~~I~~ia~~~------ga~livD~ah~~Gli--~~g~~~~p~--~gaDiv~~S~hK~l~Gprg-G 322 (385)
++..++ +|...|+++|.++|+++ |+++++|+||+.+.. ..+..+..+ .++|++++++||++.+|.| |
T Consensus 207 ~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G 286 (502)
T 3hbx_A 207 AAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIG 286 (502)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE
T ss_pred EEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeE
Confidence 765544 46778999999999999 999999999964432 122222223 3899999999999867654 8
Q ss_pred EEEEeCCCCchhHHH-HHHhhc-cC-------CCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 323 MIFFKKDPVLGVELE-SAINNA-VF-------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 323 ~I~~~~~~~~~~~~~-~~i~~~-~f-------p~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
+++++++ ++. +.+... .+ ..+.++.....++++..+++.+..++|.++.++..++
T Consensus 287 ~~~~~~~-----~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~ 350 (502)
T 3hbx_A 287 WVIWRNK-----EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCREN 350 (502)
T ss_dssp EEEESSG-----GGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCH-----HHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7877764 221 111110 11 1122344444566777777766556666666655543
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-19 Score=170.60 Aligned_cols=225 Identities=10% Similarity=0.023 Sum_probs=155.5
Q ss_pred ccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 104 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 104 ~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
-++|..++|. +++.|++++...+.+ ..+||. ....+ .++++++++|++.+ ..+.+.+|++|+
T Consensus 18 ~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~-------~~~~~----l~~~la~~~~~~~~---~i~~~~g~~~a~ 81 (354)
T 3ly1_A 18 PIRINFNENPLGMSPKAQAAARDAVVK--ANRYAK-------NEILM----LGNKLAAHHQVEAP---SILLTAGSSEGI 81 (354)
T ss_dssp CEECSSCCCSSCCCHHHHHHHHHTGGG--TTSCCH-------HHHHH----HHHHHHHHTTSCGG---GEEEESHHHHHH
T ss_pred eEEccCCCCCCCCCHHHHHHHHHHHhh--CcCCCC-------CchHH----HHHHHHHHhCCChH---HEEEeCChHHHH
Confidence 3555555554 689999999877653 223332 22223 45678899998764 134445566799
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh-cCCcEEEEcCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-FRPKLIIAGAS 260 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~-~~pklIi~~~s 260 (385)
..++.++++|||+|++.++.|.++.. .+...|..+..++ +++ ++.+|++++++.+++ .++|+|++..+
T Consensus 82 ~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~--~~~-~~~~d~~~l~~~l~~~~~~~~v~l~~p 150 (354)
T 3ly1_A 82 RAAIEAYASLEAQLVIPELTYGDGEH--------FAKIAGMKVTKVK--MLD-NWAFDIEGLKAAVAAYSGPSIVYLVNP 150 (354)
T ss_dssp HHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHTTCEEEEEC--CCT-TSCCCHHHHHHHHHTCSSCEEEEEESS
T ss_pred HHHHHHHhCCCCeEEECCCCchHHHH--------HHHHcCCEEEEec--CCC-CCCCCHHHHHHHhccCCCCCEEEEeCC
Confidence 99999999999999999987655421 3345666544444 543 478999999999974 47999988777
Q ss_pred CCC--CCCCHHHHHHHHHH--cCcEEEEeccccccccccCcccCCCC------CCcEEEECCCccC--ccccEEEEEEeC
Q 016668 261 AYP--RDFDYPRMRQIADA--VGALLMMDMAHISGLVAASVVADPFK------YCDVVTTTTHKSL--RGPRGGMIFFKK 328 (385)
Q Consensus 261 ~~~--~~~dl~~I~~ia~~--~ga~livD~ah~~Gli~~g~~~~p~~------gaDiv~~S~hK~l--~GprgG~I~~~~ 328 (385)
++| ...+.+++.++++. +|+++++|++|. ++...+..+..+. +.+++++|+||++ +|.|.|++++++
T Consensus 151 ~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 229 (354)
T 3ly1_A 151 NNPTGTITPADVIEPWIASKPANTMFIVDEAYA-EFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHP 229 (354)
T ss_dssp CTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTG-GGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCH
T ss_pred CCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHH-HhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCH
Confidence 765 57788888888887 999999999985 4444443222221 2348899999997 577889999976
Q ss_pred CCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 329 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+.+.....+ .+++....+++..+++
T Consensus 230 ------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~ 257 (354)
T 3ly1_A 230 ------TVIALMGRYVAG---EKINFSGVDAALASMN 257 (354)
T ss_dssp ------HHHHHHGGGTTC---SCCCHHHHHHHHHHTT
T ss_pred ------HHHHHHHHhcCC---CCCCHHHHHHHHHHhc
Confidence 688888766544 3556666666666654
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=175.50 Aligned_cols=254 Identities=13% Similarity=0.098 Sum_probs=162.0
Q ss_pred cCCh-HHHHHHHHHHHHh-h---hccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 016668 85 EADP-EVCEIITKEKERQ-F---KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (385)
Q Consensus 85 ~~dp-~~~~~i~~e~~~~-~---~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~l 157 (385)
++++ +.+..+.+...+. . .-+++..+++. +++.+.+++...+.+....+|+. .....++++...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~l~~~ia~~~ 76 (376)
T 2dou_A 3 RVPEPSVFLVVDEAKRKARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCL------KSCTLPFLEEAARWY 76 (376)
T ss_dssp -CCCTHHHHHHHHHHHHHHHTTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCC------HHHHHHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHhhccCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCC------CCCCHHHHHHHHHHH
Confidence 3455 6666665544433 1 23556555443 47999999987764321223322 233457887777788
Q ss_pred HHHcCCCCC-CCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC
Q 016668 158 LAAFNLDEN-KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (385)
Q Consensus 158 a~lfg~~~~-~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 236 (385)
.+.+|++.+ +. ..+.+++|++|+..++.++++|||+|++.+|.|.++.. .+...|..+..++ + +++.
T Consensus 77 ~~~~g~~~~~~~-~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~~~~--~-~~~~ 144 (376)
T 2dou_A 77 EGRYGVGLDPRR-EALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFG--------AARVASLRTFLIP--L-REDG 144 (376)
T ss_dssp HHHHSCCCCTTT-SEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHTTCEEEEEC--B-CTTS
T ss_pred HHHhCCCCCCCc-cEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHH--------HHHHcCCEEEEee--C-CCCC
Confidence 787898621 10 12344455679999999999999999999987655321 2345566554444 4 3345
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-----CCc
Q 016668 237 LVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCD 306 (385)
Q Consensus 237 ~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-----gaD 306 (385)
.+|++++++.++. ++|+|++..+++| ...+ +++|.++|+++|+++|+|++|. ++...+..++.+. +.+
T Consensus 145 ~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~ 222 (376)
T 2dou_A 145 LADLKAVPEGVWR-EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYV-DQVYEGEAPSPLALPGAKERV 222 (376)
T ss_dssp SBCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGBSSSCCCCGGGSTTGGGTE
T ss_pred CCCHHHHHHhhcc-CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccch-hcccCCCCCChhhcCCCCCcE
Confidence 6899999988864 6899988766665 4444 6789999999999999999985 3333332222222 345
Q ss_pred EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 307 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
+++.|+||+| +|.|.|++++++ ++.+.+......... +++....++...+++
T Consensus 223 i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~ 276 (376)
T 2dou_A 223 VELFSLSKSYNLAGFRLGFALGSE------EALARLERVKGVIDF-NQYAGVLRMGVEALK 276 (376)
T ss_dssp EEEEEHHHHHTCGGGCCEEEEECH------HHHHHHHHHHHHHCC-CSCHHHHHHHHHHHT
T ss_pred EEEecchhhcCChhheeEEEecCH------HHHHHHHHHHHhccc-CCCHHHHHHHHHHHh
Confidence 8899999997 577889999877 576766543322222 234444555555564
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-19 Score=173.78 Aligned_cols=253 Identities=17% Similarity=0.118 Sum_probs=161.3
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~l 157 (385)
+++++.+.+..+..+.+.... ...+++..+++ .+++.+.+++...+.+ ...|+.. .|.+ +++ +.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~---~~~~---~l~----~~l 70 (381)
T 1v2d_A 4 HPRTEAAKESIFPRMSGLAQR-LGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQYAPP---AGLP---ALR----EAL 70 (381)
T ss_dssp CGGGGGC---CHHHHHHHHHH-HTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCSCCCT---TCCH---HHH----HHH
T ss_pred hhhhhhcCccHHHHHHHHHhc-CCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcCCCCC---CCCH---HHH----HHH
Confidence 455666666666555543332 34466654443 3579999999877653 2234331 1222 444 457
Q ss_pred HHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc--CCC
Q 016668 158 LAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD--EST 235 (385)
Q Consensus 158 a~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~--~~~ 235 (385)
++++|++.+ ..+.+.+|++|+..++.++++|||+|++.++.|.++.. .+...|..+..++ .+ +++
T Consensus 71 a~~~~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~~~~~~ 137 (381)
T 1v2d_A 71 AEEFAVEPE---SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGAKARLVR--LDLTPEG 137 (381)
T ss_dssp HHHHTSCGG---GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEE--CEEETTE
T ss_pred HHhcCCChh---hEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEEe--CCCCCcc
Confidence 778998764 23455667789999999999999999999987755421 2345676555554 43 334
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CCCcE
Q 016668 236 GLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDV 307 (385)
Q Consensus 236 ~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~gaDi 307 (385)
+.+|++++++.++. ++++|++..+++| ...+ +++|.++|+++|+++|+|++|.. +..+....+.. .+.|+
T Consensus 138 ~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~g~~~~~~~~~~~~~~~ 215 (381)
T 1v2d_A 138 FRLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDE-LYYGERPRRLREFAPERTF 215 (381)
T ss_dssp EECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBSSSCCCCHHHHCTTTEE
T ss_pred CCcCHHHHHHhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccc-cccCCCCCCHHHhcCCCEE
Confidence 67999999998864 6898888776665 4444 89999999999999999999853 33211111111 26789
Q ss_pred EEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHh
Q 016668 308 VTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 308 v~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~ 367 (385)
++.|+||++ +|+|.|+++++++ +.+.+....... ..+++....+++..+|+..
T Consensus 216 ~~~s~sK~~~~~G~r~G~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~ 270 (381)
T 1v2d_A 216 TVGSAGKRLEATGYRVGWIVGPKE------FMPRLAGMRQWT-SFSAPTPLQAGVAEALKLA 270 (381)
T ss_dssp EEEEHHHHTTCGGGCCEEEECCTT------THHHHHHHHHHH-TSSCCHHHHHHHHHHHHHH
T ss_pred EEeechhhcCCcccceEEEEeCHH------HHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCc
Confidence 999999987 5778899999874 444443321111 1133445555666677644
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=180.48 Aligned_cols=237 Identities=15% Similarity=0.162 Sum_probs=145.4
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL- 189 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all- 189 (385)
...+++.|++++...+.+. .+||...|..+... .++.+.+++++++++|++.+ ..+++++|++|+..++.+++
T Consensus 27 ~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~~~~ 100 (432)
T 3a9z_A 27 TTPLEPEVIQAVTEAMKEA--WGNPSSSYVAGRKA-KDIINTARASLAKMIGGKPQ---DIIFTSGGTESNNLVIHSTVR 100 (432)
T ss_dssp CCCCCHHHHHHHHHHHHHC--CSCTTCSSHHHHHH-HHHHHHHHHHHHHHHTCCGG---GEEEESCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHh--cCCCccCcHHHHHH-HHHHHHHHHHHHHHcCCCcC---eEEEeCChHHHHHHHHHHHHh
Confidence 3467999999999887653 25666444323222 23444578899999999753 12444455789999998886
Q ss_pred -------cCCCEEeecCCCCCccc-------cCCccc-cccc-cccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCc
Q 016668 190 -------KPHDRIMGLDLPHGGHL-------SHGFMT-PKRR-VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 253 (385)
Q Consensus 190 -------~pGD~Vl~~~~~~ggh~-------s~~~~~-~~~~-~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pk 253 (385)
+|||+|++.+|.+.++. .|.... .+.. ....|..+..++ ++++++.+|+++|++.+++ +++
T Consensus 101 ~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~--~~~~~~~~d~~~l~~~i~~-~~~ 177 (432)
T 3a9z_A 101 CFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVP--VSKVNGQVEVEDILAAVRP-TTC 177 (432)
T ss_dssp HHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEEC--CCTTTSSCCHHHHHHTCCT-TEE
T ss_pred hhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEe--cCcccCCcCHHHHHHhccC-Cce
Confidence 59999999988765431 111100 0001 123465554444 5543578999999999865 689
Q ss_pred EEEEcCCCC--CCCCCHHHHHHHHHHcC----------cEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccc
Q 016668 254 LIIAGASAY--PRDFDYPRMRQIADAVG----------ALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGP 319 (385)
Q Consensus 254 lIi~~~s~~--~~~~dl~~I~~ia~~~g----------a~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gp 319 (385)
+|+++.+++ |...|+++|.++|+++| +++++|++|+.|.. +..+. +.|++++|+||++ ||
T Consensus 178 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~ 251 (432)
T 3a9z_A 178 LVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR-----RVDVEDLGVDFLTIVGHKFY-GP 251 (432)
T ss_dssp EEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-----CCCHHHHCCSEEEEEGGGTT-CC
T ss_pred EEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-----ccChhhcCCCEEEEehhHhc-CC
Confidence 998877765 46789999999999999 99999999965421 11222 6899999999986 79
Q ss_pred cEEEEEEeCCCCchhHHHHHHhhccC------CCccCCChHHHHHHHHHHHHHh
Q 016668 320 RGGMIFFKKDPVLGVELESAINNAVF------PGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 320 rgG~I~~~~~~~~~~~~~~~i~~~~f------p~~qg~p~~~~iaala~Al~e~ 367 (385)
+.|+++++++. ....+....+ ....++++...++++..+++.+
T Consensus 252 ~~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~ 300 (432)
T 3a9z_A 252 RIGALYVRGVG-----KLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV 300 (432)
T ss_dssp SCEEEEETTBT-----TTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH
T ss_pred cceEEEEcccc-----ccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH
Confidence 99999998741 0111211100 0112456677777777777654
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=175.38 Aligned_cols=231 Identities=16% Similarity=0.189 Sum_probs=156.1
Q ss_pred cccccCCC--C-CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 105 LELIASEN--F-TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 105 l~Liasen--~-~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
+++..+++ + +++.+.+++...+.. +..++.+.++..|.. ++.+.+++++++++|.+. .+.+++|++|+
T Consensus 46 idl~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~---~~~~~l~~~la~~~g~~~-----v~~~~ggt~a~ 116 (398)
T 3a2b_A 46 LMFGSNSYLGLTTDTRIIKAAQDALEK-YGTGCAGSRFLNGTL---DIHVELEEKLSAYVGKEA-----AILFSTGFQSN 116 (398)
T ss_dssp EECSCSCTTCGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCC---HHHHHHHHHHHHHHTCSE-----EEEESSHHHHH
T ss_pred EEeecccccCCCCCHHHHHHHHHHHHH-cCCCCCCcCcccCCc---HHHHHHHHHHHHHhCCCc-----EEEECCHHHHH
Confidence 45544433 2 689999998877653 223343333333443 444556678999999853 46677888999
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc---CCcEEEEc
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIAG 258 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~---~pklIi~~ 258 (385)
..++.++++|||+|++.+|.|+++.. .+...|..+..++ . +|++++++.+++. ++++|+++
T Consensus 117 ~~~~~~~~~~gd~V~~~~p~~~~~~~--------~~~~~g~~~~~v~--~------~d~~~l~~~l~~~~~~~~~~v~~~ 180 (398)
T 3a2b_A 117 LGPLSCLMGRNDYILLDERDHASIID--------GSRLSFSKVIKYG--H------NNMEDLRAKLSRLPEDSAKLICTD 180 (398)
T ss_dssp HHHHHHSSCTTCEEEEETTCCHHHHH--------HHHHSSSEEEEEC--T------TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred HHHHHHHhCCCCEEEECCccCHHHHH--------HHHHcCCceEEeC--C------CCHHHHHHHHHhhccCCceEEEEe
Confidence 99999999999999999987765432 3445676444333 2 6899999998754 68899888
Q ss_pred CCCCC--CCCCHHHHHHHHHHcCcEEEEecccccccccc-Cccc-C--CCC-CCcEEEECCCccCccccEEEEEEeCCCC
Q 016668 259 ASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAA-SVVA-D--PFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPV 331 (385)
Q Consensus 259 ~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~-g~~~-~--p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~ 331 (385)
++++| ...++++|.++|+++|+++++|++|..|.... +... . .+. ++|++++|+||++. |.||++++++
T Consensus 181 ~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~--- 256 (398)
T 3a2b_A 181 GIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDA--- 256 (398)
T ss_dssp SBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECH---
T ss_pred CCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCH---
Confidence 77654 57899999999999999999999996553311 1100 0 011 36899999999984 6779999876
Q ss_pred chhHHHHHHhhccC-CCccCCChHHHHHHHHHHHHHh
Q 016668 332 LGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 332 ~~~~~~~~i~~~~f-p~~qg~p~~~~iaala~Al~e~ 367 (385)
++.+.+..... ....+.++..+.++...+++..
T Consensus 257 ---~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 290 (398)
T 3a2b_A 257 ---DVIDFLKHNARSVMFSASMTPASVASTLKALEII 290 (398)
T ss_dssp ---HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH
Confidence 57676654321 1122345555665555666553
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=175.85 Aligned_cols=262 Identities=10% Similarity=0.033 Sum_probs=171.9
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhccccccCCC--CCcHHHHHHHhhHhhccC-CCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen--~~s~~V~~al~s~l~~~y-~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
+++++..+++..+..+.+... ...-++|-..++ .+++.|.+++...+.... ..+|+.. .|.+ ++++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~---~g~~---~lr~~la~ 78 (422)
T 3fvs_A 6 QARRLDGIDYNPWVEFVKLAS-EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT---FGYP---PLTKILAS 78 (422)
T ss_dssp SCGGGTTCCCCHHHHHHHHHH-TSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCT---TCCH---HHHHHHHH
T ss_pred HHHHhhccCccHHHHHHHHhh-cCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCC---CCCH---HHHHHHHH
Confidence 456777788776655544322 224455554433 478999999988776432 2344432 2333 67777788
Q ss_pred HHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC--
Q 016668 156 RALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-- 233 (385)
Q Consensus 156 ~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-- 233 (385)
++.+.+|.+.+.-...+.+.+|++|+..++.++++|||+|++.+|.|.++.. .+...|..+..++ +++
T Consensus 79 ~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~~--~~~~~ 148 (422)
T 3fvs_A 79 FFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP--------MTMMAGGRPVFVS--LKPGP 148 (422)
T ss_dssp HHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEE--CBCCC
T ss_pred HHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHH--------HHHHcCCEEEEEe--ccccc
Confidence 8888888764210012444455679999999999999999999987655321 2345666555555 432
Q ss_pred ---------CCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCC---CHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 234 ---------STGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 234 ---------~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
.++.+|++++++.+++ ++++|+++.++|| ... ++++|+++|+++|+++|+|++|. ++...+..+
T Consensus 149 ~~~G~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~ 226 (422)
T 3fvs_A 149 IQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ-WMVYDGHQH 226 (422)
T ss_dssp CCSSSCCBGGGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCC
T ss_pred ccccccccccCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccch-hhccCCCCC
Confidence 2346899999998865 7899888777765 445 58999999999999999999984 454444322
Q ss_pred CCCC------CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 300 DPFK------YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 300 ~p~~------gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
.++. +.++++.|+||++ +|+|.|++++++ ++.+.+......... +++....++++.+++.
T Consensus 227 ~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~ 294 (422)
T 3fvs_A 227 ISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD------HIMKHLRTVHQNSVF-HCPTQSQAAVAESFER 294 (422)
T ss_dssp CCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH------HHHHHHHHHHHTTTC-CCCHHHHHHHHHHHHH
T ss_pred CChhhcccccCcEEEEecchhccCCccceEEEEEeCH------HHHHHHHHHHhhccC-CCCcHHHHHHHHHHhh
Confidence 2221 2337899999997 578889999887 566666543322222 3445555666667764
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=172.36 Aligned_cols=260 Identities=12% Similarity=0.056 Sum_probs=169.0
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhccccccCCC--CCcHHHHHHHhhHhhcc--CCCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQFKSLELIASEN--FTSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen--~~s~~V~~al~s~l~~~--y~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
++++...++.++..+.+... ...-++|...++ .+++.|.+++...+... ...+|+.. .|.. ++++.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~---~g~~---~l~~~la~ 88 (429)
T 1yiz_A 16 PKRYQGSTKSVWVEYIQLAA-QYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRG---FGHP---RLVQALSK 88 (429)
T ss_dssp SSSCCCCTTCHHHHHHHHHH-HHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCS---SCCH---HHHHHHHH
T ss_pred hHHhhhCCchHHHHHHHHhc-cCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCC---CCcH---HHHHHHHH
Confidence 45566677777766655332 234466654433 35799999998877541 11234331 2333 67777788
Q ss_pred HHHHHcCCCCCCCc-ceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC
Q 016668 156 RALAAFNLDENKWG-VNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (385)
Q Consensus 156 ~la~lfg~~~~~~~-~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (385)
++.+.+|.+.+ .. ..+.+.+|++|+..++.++++|||+|++.+|.|.++.. .+...|..+..++ ++++
T Consensus 89 ~l~~~~g~~~~-~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~~~~~~--~~~~ 157 (429)
T 1yiz_A 89 LYSQLVDRTIN-PMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP--------MVKAAGGIPRFIP--LKPN 157 (429)
T ss_dssp HHHHHHTSCCC-TTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEE--CBCC
T ss_pred HHHHHhCCCCC-CcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEEe--CCcc
Confidence 88888885421 11 12344455779999999999999999999987655321 2345566555444 4433
Q ss_pred ---------CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCC---CHHHHHHHHHHcCcEEEEeccccccccccCc-cc
Q 016668 235 ---------TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VA 299 (385)
Q Consensus 235 ---------~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~ 299 (385)
++.+|+++|++.++. ++++|++..+++| ... ++++|.++|+++|++||+|++|. ++...+. ..
T Consensus 158 ~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~ 235 (429)
T 1yiz_A 158 KTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE-HMVFEPFEHI 235 (429)
T ss_dssp CSSSSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTSCCC
T ss_pred cccccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccc-ccccCCCCCc
Confidence 356999999999864 7898888777665 445 48999999999999999999984 4443332 11
Q ss_pred C--CC--C-CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 300 D--PF--K-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 300 ~--p~--~-gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
. .+ . +.|+++.|+||++ +|.|.|++++++ ++.+.+......... +.+....++...+|+.
T Consensus 236 ~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~ 302 (429)
T 1yiz_A 236 RICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE------ALLKNLQMVHQNCVY-TCATPIQEAIAVGFET 302 (429)
T ss_dssp CGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH------HHHHHHHHHHHTTTC-CCCHHHHHHHHHHHHH
T ss_pred ChhhccCCcCceEEEecchhccCCCCcceEEEEeCH------HHHHHHHHHHhhccc-CCChHHHHHHHHHHhc
Confidence 1 12 1 4678999999997 466789999986 576666543221122 3344455566677776
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-19 Score=173.47 Aligned_cols=212 Identities=17% Similarity=0.122 Sum_probs=146.2
Q ss_pred ccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC--CCCCcceeecCCcHH
Q 016668 104 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGSP 179 (385)
Q Consensus 104 ~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~--~~~~~~~V~~~sGs~ 179 (385)
.+++...++ ..++.+.+++...+... ..+|+.. .|. .++++.+.+++.+.+|++ .+ ..+.+.+|++
T Consensus 43 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~---~g~---~~lr~~la~~~~~~~g~~~~~~---~v~~~~g~t~ 112 (389)
T 1o4s_A 43 VINLTAGEPDFPTPEPVVEEAVRFLQKG-EVKYTDP---RGI---YELREGIAKRIGERYKKDISPD---QVVVTNGAKQ 112 (389)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHTTC-CCCCCCT---TCC---HHHHHHHHHHHHHHHTCCCCGG---GEEEESHHHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC---CCC---HHHHHHHHHHHHHHhCCCCCHH---HEEEecCHHH
Confidence 456654444 24789999998777532 2234321 133 378887788888888874 32 2344455667
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEEc
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAG 258 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~ 258 (385)
|+..++.++++|||+|++.++.|.++.. .+...|..+..++ +++ +++.+|+++|++.+++ ++|+|++.
T Consensus 113 al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 181 (389)
T 1o4s_A 113 ALFNAFMALLDPGDEVIVFSPVWVSYIP--------QIILAGGTVNVVE--TFMSKNFQPSLEEVEGLLVG-KTKAVLIN 181 (389)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEE--CCGGGTTCCCHHHHHHTCCT-TEEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEEe--cCCccCCCCCHHHHHHhccc-CceEEEEc
Confidence 9999999999999999999987655421 3345676555555 443 2457899999999865 68888887
Q ss_pred CCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCC--C---CCCcEEEECCCccC--ccccEEEEEE
Q 016668 259 ASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--F---KYCDVVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 259 ~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p--~---~gaDiv~~S~hK~l--~GprgG~I~~ 326 (385)
.+++| ...+ +++|.++|+++|+++|+|++|.. +...+..++. + .+.|++++|+||++ +|.|.|++++
T Consensus 182 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~-~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~ 260 (389)
T 1o4s_A 182 SPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDS-LVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS 260 (389)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-SBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEe
Confidence 76654 4555 89999999999999999999864 3333321111 1 25689999999998 5667899999
Q ss_pred eCCCCchhHHHHHHhhc
Q 016668 327 KKDPVLGVELESAINNA 343 (385)
Q Consensus 327 ~~~~~~~~~~~~~i~~~ 343 (385)
++ ++.+.+...
T Consensus 261 ~~------~~~~~l~~~ 271 (389)
T 1o4s_A 261 SE------KVATAVSKI 271 (389)
T ss_dssp CH------HHHHHHHHH
T ss_pred CH------HHHHHHHHH
Confidence 76 566666544
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=171.22 Aligned_cols=234 Identities=15% Similarity=0.066 Sum_probs=153.8
Q ss_pred ccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCC-cHHH
Q 016668 104 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPA 180 (385)
Q Consensus 104 ~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~s-Gs~A 180 (385)
-+++...++ .+++.+.+++...+.+. ..+|+. ..|. .++++.+.+++.+.+|++.+ . .+|.+++ |++|
T Consensus 32 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~---~~g~---~~l~~~la~~~~~~~g~~~~-~-~~v~~~~g~~~a 102 (388)
T 1j32_A 32 VCSFSAGEPDFNTPKHIVEAAKAALEQG-KTRYGP---AAGE---PRLREAIAQKLQRDNGLCYG-A-DNILVTNGGKQS 102 (388)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCC---TTCC---HHHHHHHHHHHHHHHCCCCC-G-GGEEEESHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC---CCCC---HHHHHHHHHHHHHhcCCCCC-h-hhEEEcCCHHHH
Confidence 355554443 25789999988776442 223433 1233 37888888888888886431 1 1344444 5779
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
+..++.++++|||+|++.++.|.++.. .+...|..+..++ .+++ ++.+|+++|++.+++ ++++|++..
T Consensus 103 ~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~ 171 (388)
T 1j32_A 103 IFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEGTPVILP--TTVETQFKVSPEQIRQAITP-KTKLLVFNT 171 (388)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTCEEEEEC--CCGGGTTCCCHHHHHHHCCT-TEEEEEEES
T ss_pred HHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCCEEEEec--CCcccCCCCCHHHHHHhcCc-CceEEEEeC
Confidence 999999999999999999987655321 2345666554444 4432 457999999999865 688888777
Q ss_pred CCCC--CCC---CHHHHHHHHHHcCcEEEEeccccccccccCc-ccCC--CC----CCcEEEECCCccC--ccccEEEEE
Q 016668 260 SAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADP--FK----YCDVVTTTTHKSL--RGPRGGMIF 325 (385)
Q Consensus 260 s~~~--~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p--~~----gaDiv~~S~hK~l--~GprgG~I~ 325 (385)
+++| ... ++++|.++|+++|+++++|++|. ++...+. .++. ++ +.|+++.|+||++ +|+|.|+++
T Consensus 172 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~ 250 (388)
T 1j32_A 172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYE-KILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLA 250 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEE
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccch-hcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEE
Confidence 7665 443 48999999999999999999985 3443332 1111 21 3578999999998 567789999
Q ss_pred EeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 326 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 326 ~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
+++ ++.+.+.........+.+... .++...+++
T Consensus 251 ~~~------~~~~~l~~~~~~~~~~~~~~~-~~a~~~~l~ 283 (388)
T 1j32_A 251 GPV------PLVKAATKIQGHSTSNVCTFA-QYGAIAAYE 283 (388)
T ss_dssp CCH------HHHHHHHHHHHTTTCSCCHHH-HHHHHHHHH
T ss_pred eCH------HHHHHHHHHHhhcccCCCHHH-HHHHHHHHh
Confidence 877 576666554333333333333 333334554
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=172.64 Aligned_cols=230 Identities=18% Similarity=0.140 Sum_probs=154.3
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCC-CCCCCcceeecCCcHHHHHHHHHHh--
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPLSGSPANFEVYTAI-- 188 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~-~~~~~~~~V~~~sGs~A~~~a~~al-- 188 (385)
..++.|++++...+.+.. +++.. .+.-+....+.++ .+++++++++|. +.+ ..+.+.+|+.|+..++.++
T Consensus 39 ~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~~~~~~~~~-~l~~~la~~~~~~~~~---~v~~~~g~t~a~~~~~~~~~~ 112 (420)
T 1t3i_A 39 QKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYE-AVRNKVAKFINARSPR---EIVYTRNATEAINLVAYSWGM 112 (420)
T ss_dssp CCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHH-HHHHHHHHHTTCSCGG---GEEEESSHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHhcc--CCCCcccchHHHHHHHHHH-HHHHHHHHHcCCCCCC---eEEEcCChHHHHHHHHHHhhh
Confidence 568999999988776532 22221 1111211122233 366789999998 442 2355667788999999999
Q ss_pred --ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CC
Q 016668 189 --LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PR 264 (385)
Q Consensus 189 --l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~~ 264 (385)
++|||+|+++++.|.+... .+. ..+...|..+..++ ++ +++.+|++++++.+++ ++++|++..+++ |.
T Consensus 113 ~~~~~gd~Vl~~~~~~~~~~~-~~~---~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~ 184 (420)
T 1t3i_A 113 NNLKAGDEIITTVMEHHSNLV-PWQ---MVAAKTGAVLKFVQ--LD-EQESFDLEHFKTLLSE-KTKLVTVVHISNTLGC 184 (420)
T ss_dssp HHCCTTCEEEEETTCCGGGTH-HHH---HHHHHHCCEEEEEC--BC-TTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCB
T ss_pred cccCCCCEEEECcchhHHHHH-HHH---HHHHhcCcEEEEec--cC-CCCCcCHHHHHHhhCC-CceEEEEeCCcccccC
Confidence 9999999999987755321 010 11234465444444 54 4577999999999965 789998877664 56
Q ss_pred CCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCcccc-EEEEEEeCCCCchhHHHHHHh
Q 016668 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPR-GGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 265 ~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gpr-gG~I~~~~~~~~~~~~~~~i~ 341 (385)
..|+++|.++|+++|+++|+|++|+.|.. +..+. +.|++++|+||.+ ||. +|++++++ ++.+++.
T Consensus 185 ~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~sK~~-~~~g~G~~~~~~------~~~~~~~ 252 (420)
T 1t3i_A 185 VNPAEEIAQLAHQAGAKVLVDACQSAPHY-----PLDVQLIDCDWLVASGHKMC-APTGIGFLYGKE------EILEAMP 252 (420)
T ss_dssp BCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECH------HHHHHSC
T ss_pred cCCHHHHHHHHHHcCCEEEEEhhhccCCc-----cCchhhcCCCEEEEehhhhc-CCCceEEEEEch------HHHhhcC
Confidence 78999999999999999999999976532 11122 6899999999955 555 48888876 6777665
Q ss_pred hccCCC--------------------ccCCChHHHHHHHHHHHHHhh
Q 016668 342 NAVFPG--------------------LQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 342 ~~~fp~--------------------~qg~p~~~~iaala~Al~e~~ 368 (385)
.....+ ..+++....++++..+++.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 299 (420)
T 1t3i_A 253 PFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT 299 (420)
T ss_dssp CCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred ceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence 433211 125667777777776776554
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-18 Score=169.66 Aligned_cols=234 Identities=17% Similarity=0.091 Sum_probs=152.2
Q ss_pred ccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecC-CcHHH
Q 016668 104 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPL-SGSPA 180 (385)
Q Consensus 104 ~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~-sGs~A 180 (385)
.++|-..++ .+++.+.+++...+.... .+|+.. .|.+ ++++.+++++.+.+|.+.+ . -+|.++ +|++|
T Consensus 33 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~---~g~~---~lr~~ia~~~~~~~g~~~~-~-~~i~~t~g~~~a 103 (385)
T 1b5p_A 33 LVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAPP---AGIP---ELREALAEKFRRENGLSVT-P-EETIVTVGGSQA 103 (385)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT---TCCH---HHHHHHHHHHHHTTCCCCC-G-GGEEEESHHHHH
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC---CCCH---HHHHHHHHHHHHHhCCCCC-h-HHEEEcCChHHH
Confidence 345544443 357889999887765422 234431 2333 6777777888887886421 1 134444 55679
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
+..++.++++|||+|++.+|.|.++.. .+...|..+..++ +++ +++.+|++++++.+++ ++|+|+++.
T Consensus 104 l~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~ 172 (385)
T 1b5p_A 104 LFNLFQAILDPGDEVIVLSPYWVSYPE--------MVRFAGGVVVEVE--TLPEEGFVPDPERVRRAITP-RTKALVVNS 172 (385)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTCEEEEEE--CCGGGTTCCCHHHHHTTCCT-TEEEEEEES
T ss_pred HHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEee--cCcccCCCCCHHHHHHhcCC-CCEEEEEeC
Confidence 999999999999999999987654321 3345676555444 543 3457999999998865 688888877
Q ss_pred CCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCC--CC-CCcEEEECCCccC--ccccEEEEEEeCC
Q 016668 260 SAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP--FK-YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 260 s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p--~~-gaDiv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
++|| ..++ +++|.++|+++|++||+|++|. .+...+..++. ++ +.++++.|+||++ +|.|.|++++++
T Consensus 173 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~- 250 (385)
T 1b5p_A 173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYE-HLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPK- 250 (385)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCH-
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccch-hcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCH-
Confidence 7776 3444 8999999999999999999974 44443311111 11 3358899999997 578899999876
Q ss_pred CCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 330 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 330 ~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+++.....++..+.+ .....+...+++
T Consensus 251 -----~~~~~l~~~~~~~~~~~~-~~~~~a~~~~l~ 280 (385)
T 1b5p_A 251 -----EVIKAMASVSRQSTTSPD-TIAQWATLEALT 280 (385)
T ss_dssp -----HHHHHHHHHHHTTTCSCC-HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhhccCCCC-HHHHHHHHHHHh
Confidence 576666554333333333 333333333553
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=176.15 Aligned_cols=200 Identities=13% Similarity=0.048 Sum_probs=137.3
Q ss_pred ccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCC-CCcceeecCCcHHHHH
Q 016668 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN-KWGVNVQPLSGSPANF 182 (385)
Q Consensus 104 ~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~-~~~~~V~~~sGs~A~~ 182 (385)
.+.+.++...+++.|++++...+.+. + ++.........+++++++++.... ++...+.+.+|++|+.
T Consensus 6 ~~~~~p~p~~~~~~v~~a~~~~~~~~---~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~ 73 (385)
T 2bkw_A 6 DTLLIPGPIILSGAVQKALDVPSLGH---T---------SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWD 73 (385)
T ss_dssp CEECSSSSCCCCHHHHHTTSCCCCCT---T---------SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHH
T ss_pred ceeecCCCcCchHHHHHHHhcccccc---C---------CHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHH
Confidence 46677888889999999987543221 1 121112223356678888876420 0112355667789999
Q ss_pred HHHHHhc---cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc-cCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 016668 183 EVYTAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPKLIIAG 258 (385)
Q Consensus 183 ~a~~all---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~-~~~~~~iD~d~le~~i~~~~pklIi~~ 258 (385)
.++.+++ +|||+|++++..+- |.+. ...+...|..+..++ + + +++.+|+++|++.+++.++|+|++.
T Consensus 74 ~~~~~~~~~~~~gd~vlv~~~~~~----~~~~--~~~~~~~g~~~~~v~--~~~-~~~~~d~~~l~~~l~~~~~~~v~~~ 144 (385)
T 2bkw_A 74 IFASNFILSKAPNKNVLVVSTGTF----SDRF--ADCLRSYGAQVDVVR--PLK-IGESVPLELITEKLSQNSYGAVTVT 144 (385)
T ss_dssp HHHHHHSCTTCSCCEEEEECSSHH----HHHH--HHHHHHTTCEEEEEC--CSS-TTSCCCHHHHHHHHHHSCCSEEEEE
T ss_pred HHHHHHhccCCCCCeEEEEcCCcc----hHHH--HHHHHHcCCceEEEe--cCC-CCCCCCHHHHHHHHhcCCCCEEEEE
Confidence 9999997 99999988754221 1110 012345566555444 4 4 4578999999999976578999887
Q ss_pred CCCC--CCCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCC
Q 016668 259 ASAY--PRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 259 ~s~~--~~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~ 329 (385)
.+++ |...|+++|.++|+++ |+++++|++|..|.. +.++. ++|++++|+||++.||.| |+++++++
T Consensus 145 ~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~ 217 (385)
T 2bkw_A 145 HVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE-----EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSR 217 (385)
T ss_dssp SEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHH
T ss_pred ccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCc-----cccccccCceEEEecCccccccCCcceEEEEcHH
Confidence 6554 4678999999999999 999999999975532 22233 679999999999988776 88888773
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=171.40 Aligned_cols=233 Identities=13% Similarity=0.053 Sum_probs=148.9
Q ss_pred hccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHH
Q 016668 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (385)
Q Consensus 103 ~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A 180 (385)
.-+++..+++. +++.|.+++...+.+.. .+|+.. .|. .++++...+++.+.+|.+.. ....+++.+|++|
T Consensus 32 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~y~~~---~g~---~~lr~~ia~~~~~~~g~~~~-~~~v~~t~g~~~a 103 (391)
T 3h14_A 32 RIIHMEVGQPGTGAPRGAVEALAKSLETDA-LGYTVA---LGL---PALRQRIARLYGEWYGVDLD-PGRVVITPGSSGG 103 (391)
T ss_dssp CCEECCCSSCSSCSCHHHHHHHHHHHC--------------CC---HHHHHHHHHHHHHHHCCCCC-GGGEEEESSHHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC---CCh---HHHHHHHHHHHHHHhCCCCC-HHHEEEecChHHH
Confidence 44566544443 47889999987765422 234331 133 36777778888888885421 1123445566789
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
+..++.++++|||+|++.+|.|.++.. .+...|..+..++ ++++ ++.+|++++++. ++++|++..
T Consensus 104 l~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~----~~~~v~i~~ 169 (391)
T 3h14_A 104 FLLAFTALFDSGDRVGIGAPGYPSYRQ--------ILRALGLVPVDLP--TAPENRLQPVPADFAGL----DLAGLMVAS 169 (391)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTCEEEEEE--CCGGGTTSCCHHHHTTS----CCSEEEEES
T ss_pred HHHHHHHhcCCCCEEEEcCCCCccHHH--------HHHHcCCEEEEee--cCcccCCCCCHHHHHhc----CCeEEEECC
Confidence 999999999999999999887654421 3345676555555 4433 347899999875 689988877
Q ss_pred CCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccC--ccccEEEEEEeCCC
Q 016668 260 SAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 260 s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l--~GprgG~I~~~~~~ 330 (385)
+++| ...+ +++|.++|+++|+++|+|++|. ++...+......+ ..++++.|+||++ +|.|.|++++++
T Consensus 170 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-- 246 (391)
T 3h14_A 170 PANPTGTMLDHAAMGALIEAAQAQGASFISDEIYH-GIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPE-- 246 (391)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCG--
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcch-hcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCH--
Confidence 7765 4455 8899999999999999999984 4444443222222 3448899999998 677889999987
Q ss_pred CchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 331 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 331 ~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+.+......... +++....++...+++
T Consensus 247 ----~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~ 276 (391)
T 3h14_A 247 ----DQVRVVERIAQNMFI-CAPHASQVAALAALD 276 (391)
T ss_dssp ----GGHHHHHHHHHHTTC-CCCHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHhhhcc-CCCHHHHHHHHHHhC
Confidence 455555443322222 344444444444443
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.9e-20 Score=193.91 Aligned_cols=208 Identities=16% Similarity=0.043 Sum_probs=147.6
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
++++++++||++. .+.+++|+ .||.+++.++++|||+|+++.+.|.++.. .+.+.|.....++...
T Consensus 200 aE~~lA~~fGa~~-----a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~--------~l~lsGa~pv~v~~~~ 266 (715)
T 3n75_A 200 AEQYIARVFNADR-----SYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTH--------LMMMSDVTPIYFRPTR 266 (715)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHSCCEEEEECCCB
T ss_pred HHHHHHHHhCCCC-----ceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHH--------HHHHcCCEEEEEeccc
Confidence 4567999999987 35567885 79999999999999999999886654321 3456777555444322
Q ss_pred cCCCCC----C-----CHHHHHHHhhhc-C---CcEEEEcCC-CCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCc
Q 016668 232 DESTGL----V-----DYDMLEKTAILF-R---PKLIIAGAS-AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV 297 (385)
Q Consensus 232 ~~~~~~----i-----D~d~le~~i~~~-~---pklIi~~~s-~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~ 297 (385)
++.. + |+++|++++++. + |++|++..+ .+|...|+++|.++|++++ +++|+||+.|+.+.+.
T Consensus 267 --~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~ 342 (715)
T 3n75_A 267 --NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (715)
T ss_dssp --CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGG
T ss_pred --cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEccccccccccCCc
Confidence 2222 4 899999999753 2 346665544 4578889999999998764 7999999888755443
Q ss_pred cc--CCCC-C--CcEE---EECCCccCccc-cEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhh
Q 016668 298 VA--DPFK-Y--CDVV---TTTTHKSLRGP-RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 298 ~~--~p~~-g--aDiv---~~S~hK~l~Gp-rgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
.+ +++. + +|++ ++|+||+|+|+ +||++.++++ ...+++++.......++|+...+||+.+|++.+.
T Consensus 343 ~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-----i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~ 417 (715)
T 3n75_A 343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-----VNEETFNEAYMMHTTTSPHYGIVASTETAAAMMK 417 (715)
T ss_dssp GTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-----CCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHS
T ss_pred cccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-----hhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 33 3444 3 6865 99999999998 6799999875 1234455554444567899999999999998775
Q ss_pred CchHHHHHHHHhcc
Q 016668 369 SPEFKVYQNKSACK 382 (385)
Q Consensus 369 ~~~~~~y~~~v~~~ 382 (385)
.++.+++.++++++
T Consensus 418 ~~~g~~~~~~l~~~ 431 (715)
T 3n75_A 418 GNAGKRLINGSIER 431 (715)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHH
Confidence 43445566665543
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-19 Score=170.77 Aligned_cols=233 Identities=17% Similarity=0.149 Sum_probs=154.1
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all 189 (385)
+...+++.|++++...+.+.|. .+...+..|.... ......++++++++|++.+ ..+.+.+|++|+..++.++.
T Consensus 9 ~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~~~ 82 (384)
T 1eg5_A 9 ATTRVDDRVLEEMIVFYREKYG--NPNSAHGMGIEAN-LHMEKAREKVAKVLGVSPS---EIFFTSCATESINWILKTVA 82 (384)
T ss_dssp TCCCCCHHHHHHHHHHHHTCCC--CTTCSSHHHHHHH-HHHHHHHHHHHHHHTSCGG---GEEEESCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHH-HHHHHHHHHHHHHcCCCCC---eEEEECCHHHHHHHHHHhhh
Confidence 3447799999999988776442 2322111122222 3333467789999998753 23455667789999999987
Q ss_pred ----cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--
Q 016668 190 ----KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP-- 263 (385)
Q Consensus 190 ----~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~-- 263 (385)
+|||+|++.++.|.++... ...+...|..+ +.++++ +++.+|+++|++.+++ ++++|++..+++|
T Consensus 83 ~~~~~~gd~vl~~~~~~~~~~~~-----~~~~~~~g~~~--~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG 153 (384)
T 1eg5_A 83 ETFEKRKRTIITTPIEHKAVLET-----MKYLSMKGFKV--KYVPVD-SRGVVKLEELEKLVDE-DTFLVSIMAANNEVG 153 (384)
T ss_dssp HHTTTTCCEEEECTTSCHHHHHH-----HHHHHHTTCEE--EECCBC-TTSCBCHHHHHHHCCT-TEEEEEEESBCTTTC
T ss_pred hhccCCCCEEEECCCCchHHHHH-----HHHHHhcCCEE--EEEccC-CCCccCHHHHHHHhCC-CCeEEEEECCCCCcc
Confidence 8999999998866543211 01123456544 444455 3578999999999865 7899888776654
Q ss_pred CCCCHHHHHHHHHHcC--cEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 264 RDFDYPRMRQIADAVG--ALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~g--a~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
...|+++|.++|+++| ++||+|++|+.|.. +..+. +.|++++|+||++ ||.| |+++++++. ++.+
T Consensus 154 ~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~-----~~~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~----~~~~ 223 (384)
T 1eg5_A 154 TIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI-----PFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGV----PIRP 223 (384)
T ss_dssp BBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-----CCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTS----CCCC
T ss_pred cccCHHHHHHHHHhcCCceEEEEEhhhhcCCc-----ccCchhcCCCEEEecHHHhc-CCCceEEEEEcCCC----cccc
Confidence 6789999999999999 99999999974421 21233 6899999999974 6665 999998752 0111
Q ss_pred HHhhcc--CCCccCCChHHHHHHHHHHHHHh
Q 016668 339 AINNAV--FPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 339 ~i~~~~--fp~~qg~p~~~~iaala~Al~e~ 367 (385)
.+.... .....++++...++++..+++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 254 (384)
T 1eg5_A 224 LIHGGGQERGLRSGTQNVPGIVGAARAMEIA 254 (384)
T ss_dssp SBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH
T ss_pred ccccCcccccccCCCCChHHHHHHHHHHHHH
Confidence 111100 01123456777777777788764
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-20 Score=179.37 Aligned_cols=234 Identities=15% Similarity=0.164 Sum_probs=155.6
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
++...+++.|++++...+.+.+ ++++..+..+ ....++.+.+++++++++|++.+ ..+.+++|+.|+..++.++
T Consensus 27 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~~---~v~~~~g~t~al~~~~~~l 100 (400)
T 3vax_A 27 AATTRVDQRVADIVLHWMTAEF--GNAGSRHEYG-IRAKRGVERAREYLASTVSAEPD---ELIFTSGATESNNIALLGL 100 (400)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHH--SCSSCHHHHH-HHHHHHHHHHHHHHHHHTTCCGG---GEEEESCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHhcc--CCCcccchhH-HHHHHHHHHHHHHHHHHcCCCCC---cEEEeCCHHHHHHHHHHHH
Confidence 4455779999999988876544 3343322222 22234455578899999999853 2344556678999999999
Q ss_pred c----cCCC-EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 016668 189 L----KPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 263 (385)
Q Consensus 189 l----~pGD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~ 263 (385)
+ +||| +|++++++|.++... ...+...|..+..++ ++ +++.+|+++|++.+++ ++++|++..+++|
T Consensus 101 ~~~~~~~gd~~Vl~~~~~~~~~~~~-----~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~np 171 (400)
T 3vax_A 101 APYGERTGRRHIITSAIEHKAVLEP-----LEHLAGRGFEVDFLT--PG-PSGRISVEGVMERLRP-DTLLVSLMHVNNE 171 (400)
T ss_dssp HHHHHHHTCCEEEEETTSCHHHHHH-----HHHHHTTTCEEEEEC--CC-TTCCCCHHHHHTTCCT-TEEEEECCSBCTT
T ss_pred HHhhccCCCCEEEECccccHhHHHH-----HHHHHhcCCeEEEEc--cC-CCCCcCHHHHHHhcCC-CceEEEEECCCCC
Confidence 8 8999 999998876544221 112223566544444 55 3678999999999865 7899988776654
Q ss_pred --CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCC-CcEEEECCCccCccccE-EEEE-EeCCCCchhHHH-
Q 016668 264 --RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKY-CDVVTTTTHKSLRGPRG-GMIF-FKKDPVLGVELE- 337 (385)
Q Consensus 264 --~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~g-aDiv~~S~hK~l~Gprg-G~I~-~~~~~~~~~~~~- 337 (385)
...|+++|.++|+++|+++++|++|+.|.... .+.. +|++++|+|| +.||.| |+++ ++++ ++.
T Consensus 172 tG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-----~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~-----~~~~ 240 (400)
T 3vax_A 172 TGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPG-----DLTTPIDMISISGHK-IGAPKGVGALVTRRRE-----EMDD 240 (400)
T ss_dssp TCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGG-----GGGSCCSEEEEETGG-GTSCSSCEEEEECBCS-----SSTT
T ss_pred ceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCc-----ChhhcCcEEEEeHHH-hCCCCceEEEEEecch-----hccc
Confidence 57899999999999999999999997654311 1211 7999999999 456764 7777 7762 111
Q ss_pred --HHHhhccC------CCccCCChHHHHHHHHHHHHHhh
Q 016668 338 --SAINNAVF------PGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 338 --~~i~~~~f------p~~qg~p~~~~iaala~Al~e~~ 368 (385)
..+....+ ....++++...++++..+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 279 (400)
T 3vax_A 241 ERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE 279 (400)
T ss_dssp CBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH
T ss_pred cccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 11111111 11134567777888877876543
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-19 Score=174.06 Aligned_cols=262 Identities=16% Similarity=0.127 Sum_probs=154.5
Q ss_pred hhhcccCChHHHHHHHHHHHHh-hh---ccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQ-FK---SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~-~~---~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~ 153 (385)
++++.++.++.+..+.+...+. .+ -+++..+++. +++.+.+++...+......+|+. ..|. .++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~---~~g~---~~l~~~i 84 (412)
T 2x5d_A 11 FARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYST---SRGI---PRLRRAI 84 (412)
T ss_dssp ----------CHHHHHHHHHHHHHTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------C---TTCC---HHHHHHH
T ss_pred hHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC---CCCc---HHHHHHH
Confidence 4455556665555444333221 12 3555544443 57999999887664321223432 1233 3777777
Q ss_pred HHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (385)
.+++.+.+|.+.+.-...+.+.+|++|+..++.++++|||+|++.+|.|.++.. .+...|..+..++ +++
T Consensus 85 a~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~~~~~~--~~~ 154 (412)
T 2x5d_A 85 SHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIY--------GAVIAGAQVRSVP--LVP 154 (412)
T ss_dssp HHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHHTCEEEEEE--CST
T ss_pred HHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEee--cCC
Confidence 777777778632100013455667789999999999999999999987755421 2334565444444 553
Q ss_pred CCC-CCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCc-ccC--CCC-
Q 016668 234 STG-LVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-VAD--PFK- 303 (385)
Q Consensus 234 ~~~-~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~--p~~- 303 (385)
+++ .+|++++++.++. ++++|+++.+++| ...+ +++|.++|+++|+++|+|++|..+ ...|. .++ .++
T Consensus 155 ~~~~~~d~~~l~~~i~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~ 232 (412)
T 2x5d_A 155 GIDFFNELERAIRESIP-KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADI-VYDGWKAPSIMQVPG 232 (412)
T ss_dssp TSCHHHHHHHHHHTEES-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC-BCTTCCCCCGGGSTT
T ss_pred ccCCCCCHHHHHHhccc-CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCCCCCCChhhccC
Confidence 323 4789999998864 7899988777665 3444 688999999999999999998543 33222 111 122
Q ss_pred --CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 304 --YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 304 --gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
+.|++++|+||+| +|+|.|++++++ ++.+.+........ .+++....++...+|+.
T Consensus 233 ~~~~~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~ 292 (412)
T 2x5d_A 233 AKDIAVEFFTLSKSYNMAGWRIGFMVGNP------ELVSALARIKSYHD-YGTFTPLQVAAIAALEG 292 (412)
T ss_dssp GGGTEEEEEECC-CCSCTTSCCEEEEECH------HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHS
T ss_pred ccCcEEEEecCccccCCcccceEEEEcCH------HHHHHHHHHHhhhc-cCCCHHHHHHHHHHHhC
Confidence 4568999999998 577889999976 56666654322111 23444555555556653
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=183.59 Aligned_cols=246 Identities=15% Similarity=0.092 Sum_probs=166.8
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~-~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
++.+.+++.+.+.. +...++. .+...+...++|+.+++++++++|++ ..+ ..+++++|++|+..++.++++
T Consensus 77 ~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~--~~~~~~ggt~a~~~a~~a~~~~~~ 151 (497)
T 3mc6_A 77 GDDLIHLQTIAYEK-YCVANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTG--CGTTTSGGTESLLLACLSAKMYAL 151 (497)
T ss_dssp CHHHHHHHHHHHHH-TSSCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTC--CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH-HhhcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCC--eEEEcCcHHHHHHHHHHHHHHHHH
Confidence 46777777666543 2222222 12334556689999999999999998 222 246677788899999998865
Q ss_pred --CC---CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--C
Q 016668 191 --PH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--P 263 (385)
Q Consensus 191 --pG---D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~ 263 (385)
+| |+|+++.+.|.++. ..+...|..+..++ ++++++.+|+++|++.+++ ++++|+++.+++ |
T Consensus 152 ~~~g~~~~~Vi~~~~~h~~~~--------~~~~~~G~~~~~v~--~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG 220 (497)
T 3mc6_A 152 HHRGITEPEIIAPVTAHAGFD--------KAAYYFGMKLRHVE--LDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPHG 220 (497)
T ss_dssp HHSCCSSCEEEEETTSCHHHH--------HHHHHSCCEEEEEC--BCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTTC
T ss_pred hcCCCCCceEEEeCCccHHHH--------HHHHHcCCeEEEEe--cCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCCC
Confidence 67 99999887654421 24456677655555 5544678999999999965 689998877764 5
Q ss_pred CCCCHHHHHHHHHHcCcEEEEeccccccccc----c--Ccc-cCCC--CCCcEEEECCCccCccc-cEEEEEEeCCCCch
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVA----A--SVV-ADPF--KYCDVVTTTTHKSLRGP-RGGMIFFKKDPVLG 333 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah~~Gli~----~--g~~-~~p~--~gaDiv~~S~hK~l~Gp-rgG~I~~~~~~~~~ 333 (385)
...|+++|+++|+++|++|++|++|+.++.. . +.. +..+ .++|++++|+||++.|| +.|+++++++
T Consensus 221 ~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~---- 296 (497)
T 3mc6_A 221 IADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNS---- 296 (497)
T ss_dssp CCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSH----
T ss_pred cCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCH----
Confidence 7789999999999999999999999744321 1 111 1112 27899999999997555 5588888874
Q ss_pred hHHHHHHhhccCC----------CccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 334 VELESAINNAVFP----------GLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 334 ~~~~~~i~~~~fp----------~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
..........+ .+.++.....++++.++++.+...+|+++.+++.++
T Consensus 297 --~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~ 353 (497)
T 3mc6_A 297 --DLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGA 353 (497)
T ss_dssp --HHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33322222212 222334445577778888877766777777776654
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=178.56 Aligned_cols=202 Identities=18% Similarity=0.159 Sum_probs=142.9
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+++-.++...++.+++++...+.... |+ ...+...+++ +.+++++|.+. .+.++|||.|+..+
T Consensus 25 ~~l~~~~p~~~~~~~~a~~~~~~~~~---~~-----~~~~~~~~l~----~~la~~~~~~~-----~i~~~~gt~al~~~ 87 (391)
T 3dr4_A 25 PRISVAAPRLDGNERDYVLECMDTTW---IS-----SVGRFIVEFE----KAFADYCGVKH-----AIACNNGTTALHLA 87 (391)
T ss_dssp ---CCCCCCCCSSHHHHHHHHHHHTC---CS-----SCSHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHH
T ss_pred ceeccCCCCCCHHHHHHHHHHHHcCC---cc-----CCChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHH
Confidence 34434455667889998887765422 11 1223344444 46888999874 47788999999999
Q ss_pred HHHh-ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 016668 185 YTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 263 (385)
Q Consensus 185 ~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~ 263 (385)
+.++ ++|||+|+++++.|.++.. .+...|..+. .++++++++.+|++++++.+++ ++++|++.. .+|
T Consensus 88 l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~--~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~n-~tG 155 (391)
T 3dr4_A 88 LVAMGIGPGDEVIVPSLTYIASAN--------SVTYCGATPV--LVDNDPRTFNLDAAKLEALITP-RTKAIMPVH-LYG 155 (391)
T ss_dssp HHHHTCCTTCEEEEESSSCTHHHH--------HHHHTTCEEE--EECBCTTTCSBCGGGSGGGCCT-TEEEECCBC-GGG
T ss_pred HHHcCCCCcCEEEECCCchHHHHH--------HHHHCCCEEE--EEecCccccCcCHHHHHHhcCC-CceEEEEEC-CCC
Confidence 9999 9999999999987755421 3345666444 4456656788999999998864 678887643 356
Q ss_pred CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEEC--CCccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S--~hK~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
...|+++|.++|+++|++|++|++|+.|....+..... ..|++++| .||+|+|++||+++++++ ++.+++.
T Consensus 156 ~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~S~s~~K~l~~g~gg~~~~~~~-----~~~~~~~ 228 (391)
T 3dr4_A 156 QICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGS--LGDCATFSFFGNAIITTGEGGMITTNDD-----DLAAKMR 228 (391)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECBTTSSSCCBSCEEEEESCH-----HHHHHHH
T ss_pred ChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecc--cCCEEEEECCCCCcCCcCCeEEEEECCH-----HHHHHHH
Confidence 77899999999999999999999998776654321111 24666666 669998889999988875 5666554
Q ss_pred h
Q 016668 342 N 342 (385)
Q Consensus 342 ~ 342 (385)
.
T Consensus 229 ~ 229 (391)
T 3dr4_A 229 L 229 (391)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=170.20 Aligned_cols=227 Identities=13% Similarity=-0.005 Sum_probs=150.5
Q ss_pred ccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 104 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 104 ~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
-+++...++. .++.+.+++...+... ..+|+. ..|. .++++...+++.+.+|.+.+ ....+.+.+|++|+
T Consensus 31 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~---~~~~---~~l~~~la~~~~~~~g~~~~-~~~v~~~~g~~~a~ 102 (370)
T 2z61_A 31 VIHLEIGEPDFNTPKPIVDEGIKSLKEG-KTHYTD---SRGI---LELREKISELYKDKYKADII-PDNIIITGGSSLGL 102 (370)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHHHTT-CCSCCC---TTCC---HHHHHHHHHHHHHHSSCCCC-GGGEEEESSHHHHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHcC-ccCCCC---CCCC---HHHHHHHHHHHHHHhCCCCC-hhhEEECCChHHHH
Confidence 3555544442 4789999998777542 223433 1233 37887778888887775431 11234455667899
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.++++|||+|++.+|.|.++.. .+...|..+..++ +|++++++.+++ ++++|++..++
T Consensus 103 ~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~v~---------~d~~~l~~~l~~-~~~~v~~~~p~ 164 (370)
T 2z61_A 103 FFALSSIIDDGDEVLIQNPCYPCYKN--------FIRFLGAKPVFCD---------FTVESLEEALSD-KTKAIIINSPS 164 (370)
T ss_dssp HHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTCEEEEEC---------SSHHHHHHHCCS-SEEEEEEESSC
T ss_pred HHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCCEEEEeC---------CCHHHHHHhccc-CceEEEEcCCC
Confidence 99999999999999999987755421 2345565433332 789999999865 68888887666
Q ss_pred C--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccC--CC---CCCcEEEECCCccC--ccccEEEEEEeCCCCc
Q 016668 262 Y--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF---KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVL 332 (385)
Q Consensus 262 ~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~---~gaDiv~~S~hK~l--~GprgG~I~~~~~~~~ 332 (385)
+ |...+.+ |.++|+++|+++|+|++|.. +...+...+ .+ .+.|++++|+||++ +|.|.|++++++
T Consensus 165 nptG~~~~~~-l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~---- 238 (370)
T 2z61_A 165 NPLGEVIDRE-IYEFAYENIPYIISDEIYNG-LVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND---- 238 (370)
T ss_dssp TTTCCCCCHH-HHHHHHHHCSEEEEECTTTT-CBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH----
T ss_pred CCcCcccCHH-HHHHHHHcCCEEEEEcchhh-cccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH----
Confidence 5 4678899 99999999999999999864 333332211 12 15679999999998 567789999987
Q ss_pred hhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 333 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+.+........ .+++....+++..+++
T Consensus 239 --~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~ 268 (370)
T 2z61_A 239 --EIIEAILKLQQNLF-ISAPTISQYAALKAFE 268 (370)
T ss_dssp --HHHHHHHHHHHHHT-SSSCHHHHHHHGGGGS
T ss_pred --HHHHHHHHHHhhcc-cCCCHHHHHHHHHHHh
Confidence 56666654332222 2344444445455554
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=175.90 Aligned_cols=236 Identities=17% Similarity=0.142 Sum_probs=154.7
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 188 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al- 188 (385)
....++.|++++...+.+.. ...+.. +.|.. .. .....+++.+++++|++.+ ..+++.+|+.|+..++.++
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~y~~--~~-~~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~~~ 97 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQ-ENGPFSIAANQH--IQ-QLIAQLRQALAETFNVDPN---TITITDNVTTGCDIVLWGLD 97 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHH-HHCSSSHHHHHH--HH-HHHHHHHHHHHHHTTSCGG---GEEEESSHHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHHHHh-ccCCcchhhHHH--HH-HHHHHHHHHHHHHcCCCHH---HEEEeCChHHHHHHHHhCCC
Confidence 44567889999887765421 111110 01111 11 2333456788999998763 2355667788999999999
Q ss_pred ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CCC
Q 016668 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAY--PRD 265 (385)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~~s~~--~~~ 265 (385)
++|||+|++.++.|.++... +. ......|..+..++ +++ +++.+|++++++.+++ ++++|+++.+++ |..
T Consensus 98 ~~~gd~vl~~~~~~~~~~~~-~~---~~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~ 170 (390)
T 1elu_A 98 WHQGDEILLTDCEHPGIIAI-VQ---AIAARFGITYRFFP--VAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQV 170 (390)
T ss_dssp CCTTCEEEEETTCCHHHHHH-HH---HHHHHHCCEEEEEC--CGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCB
T ss_pred CCCCCEEEEecCcccHHHHH-HH---HHHHHhCcEEEEEc--CCCCCCccchHHHHHHhcCC-CceEEEEeccccCCcee
Confidence 89999999999877554210 00 01233465555444 432 3567999999998865 789998877765 467
Q ss_pred CCHHHHHHHHH----HcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 266 FDYPRMRQIAD----AVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 266 ~dl~~I~~ia~----~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
.|+++|.++|+ ++|+++++|++|+.|.. +..+. +.|++++|+||++.|+.| |+++++++ +.+
T Consensus 171 ~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~------~~~ 239 (390)
T 1elu_A 171 LPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-----PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD------CLG 239 (390)
T ss_dssp CCHHHHHHHHHHCCSSSCCEEEEECTTTBTTB-----CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT------TGG
T ss_pred cCHHHHHHHHhhhhhhcCcEEEEEcccccCCc-----CCChhhcCCCEEEccccccccCCCceEEEEECHH------hHh
Confidence 89999999999 99999999999976532 22232 679999999997766655 99999874 434
Q ss_pred HHhhccC---------------------CCccCCChHHHHHHHHHHHHHhhCch
Q 016668 339 AINNAVF---------------------PGLQGGPHNHTIGGLAVCLKHAQSPE 371 (385)
Q Consensus 339 ~i~~~~f---------------------p~~qg~p~~~~iaala~Al~e~~~~~ 371 (385)
++..... ....++++...++++..+++.+...+
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~ 293 (390)
T 1elu_A 240 EINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQG 293 (390)
T ss_dssp GCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHC
T ss_pred hcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 4332110 01234566677777777777654433
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=174.20 Aligned_cols=226 Identities=13% Similarity=0.047 Sum_probs=154.2
Q ss_pred hccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHH
Q 016668 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (385)
Q Consensus 103 ~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A 180 (385)
.-++|-.++|. +++.|++++...+.. ..+|+... + .++ ++++++++|++.+ ..+.+++|++|
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~~---~----~~l----r~~la~~~~~~~~---~v~~~~g~~~a 94 (365)
T 3get_A 31 EVIKLASNENPFGTPPKAIECLRQNANK--AHLYPDDS---M----IEL----KSTLAQKYKVQNE---NIIIGAGSDQV 94 (365)
T ss_dssp CCEECSSCCCTTCSCHHHHHHHHHHGGG--TTSCCCTT---C----HHH----HHHHHHHHTCCGG---GEEEESSHHHH
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHh--hccCCCCC---h----HHH----HHHHHHHhCCCcc---eEEECCCHHHH
Confidence 34666656555 589999999887653 23455421 2 134 4467888998764 13445556679
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
+..++.++++|||+|++.+|.|.++.. .+...|..+..++ ++.+++ +|++++++.++ .++|+|+++.+
T Consensus 95 ~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~~~~~-~d~~~l~~~l~-~~~~~v~~~~p 162 (365)
T 3get_A 95 IEFAIHSKLNSKNAFLQAGVTFAMYEI--------YAKQCGAKCYKTQ--SITHNL-DEFKKLYETHK-DEIKLIFLCLP 162 (365)
T ss_dssp HHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHHHTCEEEECS--SSSCCH-HHHHHHHHHTT-TTEEEEEEESS
T ss_pred HHHHHHHHhCCCCEEEEeCCChHHHHH--------HHHHcCCEEEEEe--cCCCCC-CCHHHHHHHhC-CCCCEEEEcCC
Confidence 999999999999999999887654321 2345566444444 433567 99999999996 47899988777
Q ss_pred CCC--CCCCHHHHHHHHH--HcCcEEEEecccccccc--ccCcccCCCC-----CCcEEEECCCccC--ccccEEEEEEe
Q 016668 261 AYP--RDFDYPRMRQIAD--AVGALLMMDMAHISGLV--AASVVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 261 ~~~--~~~dl~~I~~ia~--~~ga~livD~ah~~Gli--~~g~~~~p~~-----gaDiv~~S~hK~l--~GprgG~I~~~ 327 (385)
+|| ...+.+++.++++ ++|+++++|++|..+.. .++.....+. +.+++++|+||++ +|.|.|+++++
T Consensus 163 ~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 242 (365)
T 3get_A 163 NNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN 242 (365)
T ss_dssp CTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC
T ss_pred CCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC
Confidence 664 6788888888888 67999999999853321 2221112211 3458899999996 67788999996
Q ss_pred CCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 328 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 328 ~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
+ ++.+++.....+. +++....+++..+++
T Consensus 243 ~------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 271 (365)
T 3get_A 243 A------NIISAFYKLRAPF---NVSNLALKAAVAAMD 271 (365)
T ss_dssp H------HHHHHHHHHSCTT---CSCHHHHHHHHHHHT
T ss_pred H------HHHHHHHHhcCCC---CcCHHHHHHHHHHhC
Confidence 6 6778776654432 356666666666665
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=166.88 Aligned_cols=247 Identities=16% Similarity=0.082 Sum_probs=160.7
Q ss_pred hhhcccCChHHHHHHHHHHHHhh---hccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQF---KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~---~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~ 154 (385)
...++++.++.......+..++. .-++|-..+|. +++.|++++...+.. ..+||.. + ..++ +
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~----~---~~~l----r 73 (363)
T 3ffh_A 7 KKSLAGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTSKKVAAIQANSSVE--TEIYPDG----W---ASSL----R 73 (363)
T ss_dssp CGGGTTCCC----CHHHHHHHTTTCSCCEECSSCSCTTCCCHHHHHHHHTCBSC--CCBC-----------CHHH----H
T ss_pred hHHHHhCCCCCCCCCHHHHHHhcCCCceEEccCCCCCCCCCHHHHHHHHHHHHH--hhcCCCc----c---hHHH----H
Confidence 34455666665443333333322 33566555555 589999999876532 1234421 1 1233 4
Q ss_pred HHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC
Q 016668 155 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (385)
+++++++|++.+ ..+.+.+|++|+..++.++++|||+|++.++.|.++. ..+...|..+..++ +++
T Consensus 74 ~~la~~~~~~~~---~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--------~~~~~~g~~~~~v~--~~~- 139 (363)
T 3ffh_A 74 KEVADFYQLEEE---ELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYR--------QNALIEGAEVREIP--LLQ- 139 (363)
T ss_dssp HHHHHHHTCCGG---GEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHH--------HHHHHHTCEEEEEE--CCT-
T ss_pred HHHHHHhCCChh---hEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHH--------HHHHHcCCEEEEec--CCC-
Confidence 578889998764 2344556677999999999999999999988664432 12345566554444 543
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC-----CC
Q 016668 235 TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK-----YC 305 (385)
Q Consensus 235 ~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~-----ga 305 (385)
++.+|++++++.+++ ++++|++..+++| ...|.+++.++++.+ |+++++|++|. ++.. +..+..+. ..
T Consensus 140 ~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~-~~~~~~~~~~~~~~~ 216 (363)
T 3ffh_A 140 DGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYI-EYVT-PQPEKHEKLVRTYKN 216 (363)
T ss_dssp TSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTG-GGCS-SCCCCCGGGGGTCTT
T ss_pred CCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchH-hhcC-ccccCHHHHhhcCCC
Confidence 578999999999965 7899988777654 678999999999888 99999999985 3332 22222221 22
Q ss_pred cEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 306 DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 306 Div~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++++.|++|++ +|.|.|++++++ ++.+++.....+ .+++....+++..+++
T Consensus 217 ~i~~~s~sK~~g~~G~r~G~~~~~~------~~~~~l~~~~~~---~~~~~~~~~~~~~~l~ 269 (363)
T 3ffh_A 217 LIITRTFSKIYGLASARVGYGIADK------EIIRQLNIVRPP---FNTTSIGQKLAIEAIK 269 (363)
T ss_dssp EEEEEESSSTTCCSSCCCEEEEECH------HHHHHHHHTCCS---CCCBHHHHHHHHHHHH
T ss_pred EEEEeechhhhcCchhceeeeecCH------HHHHHHHHhCCC---CCCCHHHHHHHHHHhc
Confidence 37889999997 567779999976 687877765442 2466666666666775
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=170.82 Aligned_cols=188 Identities=15% Similarity=0.145 Sum_probs=133.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pG 192 (385)
.++.+++++...+.... .+ |+.+ +...+++ +.+++++|.+. .|.++|||+|+..++.++ ++||
T Consensus 15 ~~~~~~~a~~~~l~~~~-~~-----~~~~-~~~~~l~----~~la~~~~~~~-----~i~~~sGt~al~~~l~~l~~~~g 78 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQ-WW-----RMGG-DEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG 78 (388)
T ss_dssp CCHHHHHHHHHHHHTSC-CB-----TTTC-SHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHcCC-ee-----ecCC-HHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCc
Confidence 34899999888775421 01 2222 3233444 56888999874 577889999999999999 9999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHH
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR 272 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~ 272 (385)
|+|+++++.|.++.. .+...|..+ +.++++++++.+|+++|++.+++ ++++|+.+ +.+|...|+++|.
T Consensus 79 d~Vi~~~~~~~~~~~--------~~~~~g~~~--~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~-n~tG~~~~l~~i~ 146 (388)
T 1b9h_A 79 TEVIVPAFTFISSSQ--------AAQRLGAVT--VPVDVDAATYNLDPEAVAAAVTP-RTKVIMPV-HMAGLMADMDALA 146 (388)
T ss_dssp CEEEEESSSCTHHHH--------HHHHTTCEE--EEECBCTTTCCBCHHHHHHHCCT-TEEEECCB-CGGGCCCCHHHHH
T ss_pred CEEEECCCccHHHHH--------HHHHcCCEE--EEEecCCCcCCCCHHHHHHhcCc-CceEEEEe-CCccCcCCHHHHH
Confidence 999999987655421 334566644 44456655678999999999864 67887732 2256778999999
Q ss_pred HHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccEEEEEEeCC
Q 016668 273 QIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (385)
Q Consensus 273 ~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~GprgG~I~~~~~ 329 (385)
++|+++|++|++|++|+.|....+.....+..+++.++|.||+++|++||+++++++
T Consensus 147 ~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~ 203 (388)
T 1b9h_A 147 KISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG 203 (388)
T ss_dssp HHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT
T ss_pred HHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCH
Confidence 999999999999999987765433211112113344555669998899999999875
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-19 Score=173.87 Aligned_cols=198 Identities=21% Similarity=0.200 Sum_probs=143.3
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
.+....++.+.+++...+.... ++ ..+...++| +.+++++|.+. .+.++|||.|+..++.++
T Consensus 9 ~~~~~~~~~v~~a~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~~~~~sGt~al~~al~~~ 70 (367)
T 3nyt_A 9 NQQARIKDKIDAGIQRVLRHGQ--------YI-LGPEVTELE----DRLADFVGAKY-----CISCANGTDALQIVQMAL 70 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------CS-SCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHHHhcCC--------cc-CChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHh
Confidence 3444567888888877765421 12 234344554 46888999874 477889999999999999
Q ss_pred -ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCC
Q 016668 189 -LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFD 267 (385)
Q Consensus 189 -l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~d 267 (385)
++|||+|+++++.|.+... .+...|.. ++.++++++++.+|++++++.+++ ++++|+.+. .+|...|
T Consensus 71 ~~~~gd~Vi~~~~~~~~~~~--------~~~~~G~~--~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~ 138 (367)
T 3nyt_A 71 GVGPGDEVITPGFTYVATAE--------TVALLGAK--PVYVDIDPRTYNLDPQLLEAAITP-RTKAIIPVS-LYGQCAD 138 (367)
T ss_dssp TCCTTCEEEEESSSCTHHHH--------HHHHTTCE--EEEECBCTTTCSBCGGGTGGGCCT-TEEEECCBC-GGGCCCC
T ss_pred CCCCcCEEEECCCccHHHHH--------HHHHcCCE--EEEEecCCccCCcCHHHHHHhcCc-CCcEEEeeC-CccChhh
Confidence 9999999999987654321 33456664 445556666689999999999864 788887543 3567789
Q ss_pred HHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECC--CccCcc-ccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 268 YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRG-PRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 268 l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~--hK~l~G-prgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+++|.++|+++|++||+|++|+.|....+..... ..|++++|+ ||++.+ ..||+++++++ ++.+++...
T Consensus 139 ~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~Sf~~~K~l~~~g~gg~~~~~~~-----~l~~~~~~~ 210 (367)
T 3nyt_A 139 FDAINAIASKYGIPVIEDAAQSFGASYKGKRSCN--LSTVACTSFFPSAPLGCYGDGGAIFTNDD-----ELATAIRQI 210 (367)
T ss_dssp HHHHHHHHHHTTCCBEEECTTTTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCCEEEEESCH-----HHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECccccCCeECCeeccC--CCCEEEEECCCCCcCCCcCceeEEEeCCH-----HHHHHHHHH
Confidence 9999999999999999999998776644322111 239999996 899976 46899998765 677666543
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=168.72 Aligned_cols=227 Identities=15% Similarity=0.084 Sum_probs=153.7
Q ss_pred hccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC-CCCCCcceeecC-CcH
Q 016668 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL-DENKWGVNVQPL-SGS 178 (385)
Q Consensus 103 ~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~-~~~~~~~~V~~~-sGs 178 (385)
.-++|...+|. +++.|++++...+.+....+|+.. | ..++ ++++++++|+ +.+ +|.++ +|+
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----~---~~~l----~~~la~~~g~~~~~----~i~~~~g~t 95 (367)
T 3euc_A 31 GLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVP----S---SEAL----RAKLKEVMQVPAGM----EVLLGNGSD 95 (367)
T ss_dssp TCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCCC----C---HHHH----HHHHHHHHTCCTTC----EEEEEEHHH
T ss_pred CeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC----c---HHHH----HHHHHHHhCCCCcc----eEEEcCCHH
Confidence 34666656655 589999999887764222344431 2 2244 4567888998 442 34444 456
Q ss_pred HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 016668 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (385)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~ 258 (385)
+|+..++.++++|||+|++.++.|.++.. .+...|..+..++ +++ ++.+|++++++.+++.++|+|++.
T Consensus 96 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~~-~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 96 EIISMLALAAARPGAKVMAPVPGFVMYAM--------SAQFAGLEFVGVP--LRA-DFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp HHHHHHHHHTCCTTCEEEEEESCSCCSCH--------HHHTTTCEEEEEE--CCT-TSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCHHHHHH--------HHHHcCCeEEEec--CCC-CCCCCHHHHHHHhhccCCCEEEEc
Confidence 79999999999999999999887654321 3345676555444 553 578999999999976579999887
Q ss_pred CCCCC--CCC---CHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC--CCcEEEECCCccC-ccccEEEEEEeC
Q 016668 259 ASAYP--RDF---DYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRGGMIFFKK 328 (385)
Q Consensus 259 ~s~~~--~~~---dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l-~GprgG~I~~~~ 328 (385)
.++|| ... ++++|.++|+++ |+++++|++|. ++...+..+ .++ +.++++.|+||+. +|.+.|++++++
T Consensus 165 ~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~-~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~ 242 (367)
T 3euc_A 165 YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQ-PFAQESWMS-RLTDFGNLLVMRTVSKLGLAGIRLGYVAGDP 242 (367)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTC-CSSSCCSGG-GGGTCTTEEEEEECCCTTSCSCCEEEEEECH
T ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcch-hhcccchHH-HHhhCCCEEEEecchhhcccccCceeeeeCH
Confidence 77765 343 477888889999 99999999985 333222211 122 3458899999983 567889999976
Q ss_pred CCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 329 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
++.+.+.....+. +++....++...+++.
T Consensus 243 ------~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~ 271 (367)
T 3euc_A 243 ------QWLEQLDKVRPPY---NVNVLTEATALFALEH 271 (367)
T ss_dssp ------HHHHHHGGGCCSS---CCCHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHhCCCC---CCCHHHHHHHHHHhcC
Confidence 6778776654332 3555666666666653
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=176.98 Aligned_cols=236 Identities=12% Similarity=0.085 Sum_probs=159.7
Q ss_pred cccccC--CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceeecCCcHHH
Q 016668 105 LELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQPLSGSPA 180 (385)
Q Consensus 105 l~Lias--en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~--~~~~~~~~V~~~sGs~A 180 (385)
|++..+ +-..+|.|.+++...+... ..+|+. .. .++++.+++++++.+|. +.+ ..+++++|++|
T Consensus 64 i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~~---~~l~~~l~~~l~~~~g~~~~~~---~v~~~~g~~ea 131 (421)
T 3l8a_A 64 LQMWVADMDFLPVPEIKEAIINYGREH-IFGYNY-----FN---DDLYQAVIDWERKEHDYAVVKE---DILFIDGVVPA 131 (421)
T ss_dssp EECCSSCCCSCCCHHHHHHHHHHHHHC-CSSCBC-----CC---HHHHHHHHHHHHHHHCCCCCGG---GEEEESCHHHH
T ss_pred eecccCCCCCCCCHHHHHHHHHHHhcC-CcCCCC-----CC---HHHHHHHHHHHHHHhCCCCCHH---HEEEcCCHHHH
Confidence 444433 3345899999998877542 223432 11 36777788899999994 442 23344455569
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
+..++.+++++||+|++.++.|.++.. .+...|..+..+++.....++.+|+++|++.+++.++++|+++.+
T Consensus 132 ~~~a~~~~~~~gd~Vi~~~~~y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p 203 (421)
T 3l8a_A 132 ISIALQAFSEKGDAVLINSPVYYPFAR--------TIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSP 203 (421)
T ss_dssp HHHHHHHHSCTEEEEEEEESCCHHHHH--------HHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESS
T ss_pred HHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCC
Confidence 999999999999999999887654321 334566655555543222334689999999997557899988877
Q ss_pred CCC--CC---CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-------CCcEEEECCCccC--ccccEEEEEE
Q 016668 261 AYP--RD---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 261 ~~~--~~---~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-------gaDiv~~S~hK~l--~GprgG~I~~ 326 (385)
++| .. .++++|+++|+++|++||+|++| .++...|....++. +.++++.|++|+| +|.+.|++++
T Consensus 204 ~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~ 282 (421)
T 3l8a_A 204 HNPGGRVWDNDDLIKIAELCKKHGVILVSDEIH-QDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAII 282 (421)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEEC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccc-cccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEc
Confidence 665 34 36899999999999999999998 45555443222221 2237899999997 5678899998
Q ss_pred eCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 327 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 327 ~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
+++ ++.+.+.........++++...+++...++++
T Consensus 283 ~~~-----~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~ 317 (421)
T 3l8a_A 283 QNE-----SLRRKFQYRQLANNQHEVPTVGMIATQAAFQY 317 (421)
T ss_dssp CSH-----HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred CCH-----HHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc
Confidence 844 67777655432223345666777777777764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-19 Score=172.89 Aligned_cols=261 Identities=13% Similarity=0.001 Sum_probs=165.3
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccccC--CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Lias--en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
+++..+++..+..+.+. .....-++|-.. +..+++.|.+++...+.+....+|+.. .|.+ ++++...+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g~~---~l~~~la~~~~ 75 (410)
T 3e2y_A 3 KRIEGLDSNVWVEFTKL-AADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRG---FGHP---ALVKALSCLYG 75 (410)
T ss_dssp GGGTTCCCCHHHHTTTT-TTSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCT---TCCH---HHHHHHHHHHH
T ss_pred hhhccCCccHHHHHHHH-hcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCC---CChH---HHHHHHHHHHH
Confidence 34555555544433221 111233555433 334789999999888764333345442 1333 67777778888
Q ss_pred HHcCCCCCCCcceeecC-CcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc-----
Q 016668 159 AAFNLDENKWGVNVQPL-SGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD----- 232 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~-sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~----- 232 (385)
+.+|.+.+ ...+|.++ +|++|+..++.++++|||+|++.+|.|.++.. .+...|..+..++++..
T Consensus 76 ~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~~~~g~ 146 (410)
T 3e2y_A 76 KIYQRQID-PNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEP--------MVRMAGAVPVFIPLRSKPTDGM 146 (410)
T ss_dssp HHHTSCCC-TTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEECCCCSS
T ss_pred HHhCCCCC-CCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCCEEEEEeccccccccc
Confidence 88886532 10134444 45679999999999999999999887654421 23456665555554321
Q ss_pred ---CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CC---CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-
Q 016668 233 ---ESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RD---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK- 303 (385)
Q Consensus 233 ---~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~---~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~- 303 (385)
.+++.+|++++++.+++ ++++|+++.+++| .. .++++|+++|+++|+++|+|++|. ++...+..+.++.
T Consensus 147 ~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~ 224 (410)
T 3e2y_A 147 KWTSSDWTFDPRELESKFSS-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE-WLVYTGHTHVKIAT 224 (410)
T ss_dssp CCBGGGEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGG
T ss_pred cccccCCcCCHHHHHhhcCC-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh-hcccCCCCCCCHHH
Confidence 12346899999998864 7899988877765 33 368999999999999999999984 4444443221221
Q ss_pred -----CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 304 -----YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 304 -----gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
+.++++.|+||++ +|+|.|++++++ ++.+.+......... +++....++.+.+++.
T Consensus 225 ~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~ 287 (410)
T 3e2y_A 225 LPGMWERTITIGSAGKTFSVTGWKLGWSIGPA------HLIKHLQTVQQNSFY-TCATPLQAALAEAFWI 287 (410)
T ss_dssp STTCGGGEEEEEEHHHHSSCGGGCCEEEECCH------HHHHHHHHHHHTTTC-CCCHHHHHHHHHHHHH
T ss_pred cCCccCeEEEEecchhhcCCCCceEEEEEECH------HHHHHHHHHHHhhcc-CCChHHHHHHHHHHHh
Confidence 2237899999998 578889999887 566666544332222 3444555555666653
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=172.51 Aligned_cols=195 Identities=18% Similarity=0.211 Sum_probs=130.8
Q ss_pred ccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 104 ~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
+..+..+.++..+.+.+++.. +.+. ..+|...|+ +++..++++ +++++++|.+. .+.++||++|+..
T Consensus 29 ~~p~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~r~--~~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~a~~~ 95 (398)
T 1gc0_A 29 VPPVYQTATFTFPTVEYGAAC-FAGE-QAGHFYSRI--SNPTLNLLE----ARMASLEGGEA-----GLALASGMGAITS 95 (398)
T ss_dssp SCCBCCCSCBCCC-------------------------CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH
T ss_pred CCCccCCCccccCCHHHHHHh-hcCC-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHH
Confidence 445567788888888877652 2222 223444333 455555555 46888999873 4778999999999
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 263 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~ 263 (385)
++.++++|||+|+++++.|+++..... ......|..+..++ . .|++++++.+++ ++++|+++.++++
T Consensus 96 ~l~~~~~~gd~vl~~~~~~~~~~~~~~----~~~~~~g~~~~~~~--~------~d~~~l~~~i~~-~~~~v~~~~~~np 162 (398)
T 1gc0_A 96 TLWTLLRPGDEVLLGNTLYGCTFAFLH----HGIGEFGVKLRHVD--M------ADLQALEAAMTP-ATRVIYFESPANP 162 (398)
T ss_dssp HHHHHCCTTCEEEEESSCCSHHHHHHH----HTGGGGTCEEEEEC--T------TCHHHHHHHCCT-TEEEEEEESSCTT
T ss_pred HHHHHhcCCCEEEEeCCCchhHHHHHH----HHHHHcCCEEEEEC--C------CCHHHHHHhcCC-CCeEEEEECCCCC
Confidence 999999999999999988766432100 01134455443332 2 389999999865 7899998877664
Q ss_pred --CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCC
Q 016668 264 --RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (385)
Q Consensus 264 --~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~ 329 (385)
...|+++|.++|+++|+++++|++|..+.. ..++. ++|+++.|+||++.||. ||+++++++
T Consensus 163 tG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~-----~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~ 229 (398)
T 1gc0_A 163 NMHMADIAGVAKIARKHGATVVVDNTYCTPYL-----QRPLELGADLVVHSATKYLSGHGDITAGIVVGSQA 229 (398)
T ss_dssp TCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH-----CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHH
T ss_pred CcccccHHHHHHHHHHcCCEEEEECCCccccc-----CCchhhCceEEEECCccccCCCCCCeEEEEEEChH
Confidence 678999999999999999999999976643 22344 78999999999997764 689988873
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=175.45 Aligned_cols=192 Identities=16% Similarity=0.101 Sum_probs=140.4
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP 191 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~p 191 (385)
..++.+++++...+.... | ...+...++| +.+++++|.+. .+.+.|||.|+..++.++ ++|
T Consensus 14 ~~~~~~~~a~~~~~~~~~--------~-~~~~~~~~l~----~~la~~~~~~~-----~i~~~sgt~al~~~l~~l~~~~ 75 (373)
T 3frk_A 14 EIEYEIKFKFEEIYKRNW--------F-ILGDEDKKFE----QEFADYCNVNY-----CIGCGNGLDALHLILKGYDIGF 75 (373)
T ss_dssp HHHHHHHHHHHHHHHHTC--------C-SSSHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHCCC--------c-cCCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCC
Confidence 446778888877665421 1 1224344444 46888999874 477889999999999999 999
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHH
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM 271 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I 271 (385)
||+|+++++.|.+... .+...|..+ +.++++++++.+|++++++.+++ ++++|++.. .+|...|+++|
T Consensus 76 gd~Vi~~~~~~~~~~~--------~~~~~g~~~--~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n-~~G~~~~l~~i 143 (373)
T 3frk_A 76 GDEVIVPSNTFIATAL--------AVSYTGAKP--IFVEPDIRTYNIDPSLIESAITE-KTKAIIAVH-LYGQPADMDEI 143 (373)
T ss_dssp TCEEEEETTSCTHHHH--------HHHHHSCEE--EEECEETTTTEECGGGTGGGCCT-TEEEEEEEC-CTTCCCCHHHH
T ss_pred cCEEEECCCCcHHHHH--------HHHHcCCEE--EEEeccccccCcCHHHHHHhcCC-CCeEEEEEC-CCcCcccHHHH
Confidence 9999999987755321 334556644 44456656788999999999865 788888543 36778899999
Q ss_pred HHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCC--ccCcc-ccEEEEEEeCCCCchhHHHHHHhh
Q 016668 272 RQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRG-PRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 272 ~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~h--K~l~G-prgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.++|+++|++|++|++|+.|....+. ++. .+|++++|+| |++++ +.||+++++++ ++.+++..
T Consensus 144 ~~l~~~~~~~li~D~a~~~g~~~~~~---~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~-----~~~~~~~~ 210 (373)
T 3frk_A 144 KRIAKKYNLKLIEDAAQAHGSLYKGM---KVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDK-----DLAEKIKA 210 (373)
T ss_dssp HHHHHHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSSCEEEEESCH-----HHHHHHHH
T ss_pred HHHHHHcCCEEEEECCcccCCEECCE---eccccccEEEEeCcCCCccCccceeEEEEeCCH-----HHHHHHHH
Confidence 99999999999999999877654332 122 3699888855 99977 67899998875 56665543
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-18 Score=172.56 Aligned_cols=229 Identities=16% Similarity=0.109 Sum_probs=151.1
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-----CCCCCCcceeecCCcHHHHHHHHH
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-----LDENKWGVNVQPLSGSPANFEVYT 186 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg-----~~~~~~~~~V~~~sGs~A~~~a~~ 186 (385)
.++++.|++++...+......+|+.. .|.+ ++++ .++++++ ++.+ ..+++.+|+.|+..++.
T Consensus 70 ~~~~~~v~~a~~~~~~~~~~~~y~~~---~g~~---~lr~----~la~~~~~~~~~~~~~---~v~~t~g~t~al~~~~~ 136 (427)
T 3dyd_A 70 LPTDPEVTQAMKDALDSGKYNGYAPS---IGFL---SSRE----EIASYYHCPEAPLEAK---DVILTSGCSQAIDLCLA 136 (427)
T ss_dssp SCCCHHHHHHHHHHHHHCCSSSCCCT---TCCH---HHHH----HHHHHHCBTTBCCCGG---GEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCcCCCCCCC---CCcH---HHHH----HHHHHHhhcCCCCChH---HEEEecCcHHHHHHHHH
Confidence 36799999999888765433345431 2332 4544 5666776 4443 23555667789999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--C
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--R 264 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~ 264 (385)
++++|||+|++.+|.|.++.. .+...|..+..+++.. ++++.+|++++++.+++ ++++|++..+++| .
T Consensus 137 ~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~ 206 (427)
T 3dyd_A 137 VLANPGQNILVPRPGFSLYKT--------LAESMGIEVKLYNLLP-EKSWEIDLKQLEYLIDE-KTACLIVNNPSNPCGS 206 (427)
T ss_dssp HHCCTTCEEEEEESCCTHHHH--------HHHHTTCEEEEEEEEG-GGTTEECHHHHHSSCCT-TEEEEEEESSCTTTCC
T ss_pred HhcCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEEeccc-ccCCCCCHHHHHHHhcc-CCCEEEEECCCCCCCC
Confidence 999999999999987655421 3345676555555422 13567999999999865 6788877776665 5
Q ss_pred CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCc---EEEECCCccC--ccccEEEEEEeCCCC-ch
Q 016668 265 DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD---VVTTTTHKSL--RGPRGGMIFFKKDPV-LG 333 (385)
Q Consensus 265 ~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaD---iv~~S~hK~l--~GprgG~I~~~~~~~-~~ 333 (385)
..+ +++|+++|+++|+++++|++| .++...+..+.++. +.| +++.|+||++ +|.|.|+++++++.. ..
T Consensus 207 ~~~~~~l~~i~~~~~~~~~~~i~Deay-~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~ 285 (427)
T 3dyd_A 207 VFSKRHLQKILAVAARQCVPILADEIY-GDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFG 285 (427)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEECTT-TTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCc-hhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhH
Confidence 667 999999999999999999998 45544443222222 222 6788999984 678889999886311 00
Q ss_pred hHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 334 VELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 334 ~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
.++.+.+...... ..+++....+++..+|+.
T Consensus 286 ~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~ 316 (427)
T 3dyd_A 286 NEIRDGLVKLSQR--ILGPCTIVQGALKSILCR 316 (427)
T ss_dssp HHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHh
Confidence 1355444332211 134666667777777764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-18 Score=166.36 Aligned_cols=207 Identities=13% Similarity=0.110 Sum_probs=142.6
Q ss_pred cccccC--CCCCcHHHHHHHhhHhhccC---CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH
Q 016668 105 LELIAS--ENFTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 179 (385)
Q Consensus 105 l~Lias--en~~s~~V~~al~s~l~~~y---~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~ 179 (385)
+++... ...+++.|.+++...+.+.. ..+|+. ..|.+ ++++..++++.+.+|.+.+ ....+.+.+|++
T Consensus 38 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~---~~g~~---~lr~~la~~l~~~~g~~~~-~~~i~~~~g~~~ 110 (398)
T 3ele_A 38 YDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTS---AQGDV---ETRAAIAEFLNNTHGTHFN-ADNLYMTMGAAA 110 (398)
T ss_dssp EECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCC---TTCCH---HHHHHHHHHHHHHHCCCCC-GGGEEEESSHHH
T ss_pred EEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCC---CCCcH---HHHHHHHHHHHHHhCCCCC-hHHEEEccCHHH
Confidence 555433 23467999999987775421 123432 12433 6777788888888885421 112344445577
Q ss_pred HHHHHHHHhccCC-CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 016668 180 ANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (385)
Q Consensus 180 A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~ 258 (385)
|+..++.++++|| |+|++.+|.|.++.. .+...|..+..+ +++++++.+|++++++.+++ ++++|+++
T Consensus 111 al~~~~~~l~~~g~d~vl~~~p~~~~~~~--------~~~~~g~~~~~v--~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 179 (398)
T 3ele_A 111 SLSICFRALTSDAYDEFITIAPYFPEYKV--------FVNAAGARLVEV--PADTEHFQIDFDALEERINA-HTRGVIIN 179 (398)
T ss_dssp HHHHHHHHHCCSTTCEEEEESSCCTHHHH--------HHHHTTCEEEEE--CCCTTTSSCCHHHHHHTCCT-TEEEEEEC
T ss_pred HHHHHHHHHcCCCCCEEEEeCCCchhhHH--------HHHHcCCEEEEE--ecCCcCCcCCHHHHHHHhCc-CCCEEEEc
Confidence 9999999999999 999999987655421 234566654444 45555668999999999865 78999887
Q ss_pred CCCCC--CCCC---HHHHHHHHHH------cCcEEEEeccccccccccC-cccCCCC--CCcEEEECCCccC--ccccEE
Q 016668 259 ASAYP--RDFD---YPRMRQIADA------VGALLMMDMAHISGLVAAS-VVADPFK--YCDVVTTTTHKSL--RGPRGG 322 (385)
Q Consensus 259 ~s~~~--~~~d---l~~I~~ia~~------~ga~livD~ah~~Gli~~g-~~~~p~~--gaDiv~~S~hK~l--~GprgG 322 (385)
.++|| ...+ +++|+++|++ +|+++|+|++|. ++...+ ..+...+ +.++++.|+||++ +|.|.|
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 258 (398)
T 3ele_A 180 SPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYR-EIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIG 258 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTT-TCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEecccc-ccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeE
Confidence 77765 4556 6777899999 999999999984 444433 2222222 3458899999997 677889
Q ss_pred EEEEeCCC
Q 016668 323 MIFFKKDP 330 (385)
Q Consensus 323 ~I~~~~~~ 330 (385)
+++++++.
T Consensus 259 ~~~~~~~~ 266 (398)
T 3ele_A 259 YVLVPDEV 266 (398)
T ss_dssp EEECCTTS
T ss_pred EEEEcchh
Confidence 99998863
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=175.87 Aligned_cols=255 Identities=13% Similarity=0.121 Sum_probs=165.7
Q ss_pred CChHHHHHHHHHHHH-------h-hhccccccC--CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 86 ADPEVCEIITKEKER-------Q-FKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 86 ~dp~~~~~i~~e~~~-------~-~~~l~Lias--en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
+++.++..+.+.... . ..-++|..+ +..+++.+.+++...+.+....+|+. ..|.+ ++++.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g~~---~lr~~ia~ 106 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSP---TRGRP---SLINSLIK 106 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCC---TTCCH---HHHHHHHH
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCC---CCCCH---HHHHHHHH
Confidence 666677666654422 1 234555433 23357999999987765311223443 12433 67777777
Q ss_pred HHHHHcCCCCCCCcceeecCC-cHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC
Q 016668 156 RALAAFNLDENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (385)
Q Consensus 156 ~la~lfg~~~~~~~~~V~~~s-Gs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (385)
++.+.+|.+.+ +. +|.+++ |++|+..++.++++|||+|++.+|.|.++.. .+...|..+..++ ++++
T Consensus 107 ~l~~~~g~~~~-~~-~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~v~--~~~~ 174 (447)
T 3b46_A 107 LYSPIYNTELK-AE-NVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIP--------NIELCGGKVVYVP--INPP 174 (447)
T ss_dssp HHTTTTTSCCC-GG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEE--EECC
T ss_pred HHHHhcCCCCC-hh-hEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHH--------HHHHcCCEEEEEe--CCCc
Confidence 77777886532 11 344555 5679999999999999999999987655421 3345676555554 4333
Q ss_pred -----------CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCC---CHHHHHHHHHHcCcEEEEeccccccccccCcc
Q 016668 235 -----------TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 235 -----------~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~ 298 (385)
++.+|+++|++.++. ++|+|+++.++|| ... ++++|+++|+++|++||+|++|. ++..++..
T Consensus 175 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~ 252 (447)
T 3b46_A 175 KELDQRNTRGEEWTIDFEQFEKAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYE-HLYFTDSF 252 (447)
T ss_dssp GGGGTSCBCSTTSEECHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCC
T ss_pred cccccccccccCcccCHHHHHHhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccch-hcccCCCC
Confidence 357999999998864 7899988877765 333 58999999999999999999984 44444321
Q ss_pred cC--CC----CCCcEEEECCCccC--ccccEEEEEE-eCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHh
Q 016668 299 AD--PF----KYCDVVTTTTHKSL--RGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 299 ~~--p~----~gaDiv~~S~hK~l--~GprgG~I~~-~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~ 367 (385)
++ .+ .+.|+++.|+||+| +|+|.|++++ ++ ++.+.+.........+ ++....++++.+|+..
T Consensus 253 ~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~------~l~~~l~~~~~~~~~~-~~~~~~~a~~~aL~~~ 323 (447)
T 3b46_A 253 TRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNA------ELLSYAAKAHTRICFA-SPSPLQEACANSINDA 323 (447)
T ss_dssp CCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCH------HHHHHHHHHHHHHTSS-CCHHHHHHHHHHHHHH
T ss_pred cCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCH------HHHHHHHHHHhhccCC-CChHHHHHHHHHHhCC
Confidence 11 12 15689999999998 5788999999 65 5666665432111122 3344455556677654
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-19 Score=173.39 Aligned_cols=209 Identities=13% Similarity=0.067 Sum_probs=143.1
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
.+++.|++++...+.+....+|+. ..|.. ++++.+++++++++|.+.+.....+.+++|+.|+..++.++++||
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~y~~---~~g~~---~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g 126 (407)
T 3nra_A 53 EPTPGAFDLFSAGVQSGGVQAYTE---YRGDL---GIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARG 126 (407)
T ss_dssp CCCTTHHHHHHHHHHHTHHHHSCC---TTCCH---HHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTT
T ss_pred CCcHHHHHHHHHHHhcCCCCCcCC---CCCCH---HHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCC
Confidence 467888888887765422223332 12333 677777888999999853100013445556779999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccc---cCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL---DESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD 267 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~---~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d 267 (385)
|+|++.++.|.++.. .+...|..+..+++.. +++++.+|++++++.+++ ++++|++..+++| ...+
T Consensus 127 d~vl~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~ 197 (407)
T 3nra_A 127 DKVAIVQPDYFANRK--------LVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLFSNPNNPAGVVYS 197 (407)
T ss_dssp CEEEEEESCCTHHHH--------HHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEEESSCTTTCCCCC
T ss_pred CEEEEcCCcccchHH--------HHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEEcCCCCCCCcccC
Confidence 999999887654421 3445676555555321 124678999999999976 7898887777765 4566
Q ss_pred ---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-------CCcEEEECCCccC--ccccEEEEEEeCCCCchhH
Q 016668 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-------YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVE 335 (385)
Q Consensus 268 ---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-------gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~ 335 (385)
+++|+++|+++|+++++|++|..+ ..++....++. +.++++.|+||++ +|.|.|++++++ +
T Consensus 198 ~~~l~~i~~~~~~~~~~li~Dea~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~------~ 270 (407)
T 3nra_A 198 AEEIGQIAALAARYGATVIADQLYSRL-RYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSR------A 270 (407)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTS-BCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECH------H
T ss_pred HHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCH------H
Confidence 899999999999999999998543 33332222221 2458899999997 477889999876 5
Q ss_pred HHHHHhhc
Q 016668 336 LESAINNA 343 (385)
Q Consensus 336 ~~~~i~~~ 343 (385)
+.+.+...
T Consensus 271 ~~~~l~~~ 278 (407)
T 3nra_A 271 IIARMEKL 278 (407)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=172.65 Aligned_cols=238 Identities=16% Similarity=0.020 Sum_probs=151.2
Q ss_pred ccccccCCC-----CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH
Q 016668 104 SLELIASEN-----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS 178 (385)
Q Consensus 104 ~l~Liasen-----~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs 178 (385)
-+++...++ ..++.+.+++...+.+.. .+|+.. .|. .++++.+.+++.+.+|...+ ....+.+.+|+
T Consensus 40 ~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~---~g~---~~l~~~la~~l~~~~g~~~~-~~~v~~t~g~~ 111 (406)
T 1xi9_A 40 VIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NYYGDS---EGL---PELRKAIVEREKRKNGVDIT-PDDVRVTAAVT 111 (406)
T ss_dssp CEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CSCCCT---TCC---HHHHHHHHHHHHHHHCCCCC-GGGEEEESHHH
T ss_pred EEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-CCCCCC---CCc---HHHHHHHHHHHHHhcCCCCC-HHHEEEcCChH
Confidence 355554444 457899999987775422 234331 233 37887778888887775431 11234444557
Q ss_pred HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEE
Q 016668 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIA 257 (385)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~ 257 (385)
+|+..++.++++|||+|++.++.|.++.. .+...|..+..++ +++ +++.+|+++|++.+++ ++++|++
T Consensus 112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~l~~-~~~~v~i 180 (406)
T 1xi9_A 112 EALQLIFGALLDPGDEILVPGPSYPPYTG--------LVKFYGGKPVEYR--TIEEEDWQPDIDDIRKKITD-RTKAIAV 180 (406)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTCEEEEEE--EEGGGTSEECHHHHHHHCCT-TEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCccHHH--------HHHHcCCEEEEee--cCCCcCCcCCHHHHHHhhCc-CceEEEE
Confidence 79999999999999999999987654321 2345666555444 443 2456899999999965 6888888
Q ss_pred cCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccC--CC-CCC-cEEEECCCccC--ccccEEEEE-
Q 016668 258 GASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PF-KYC-DVVTTTTHKSL--RGPRGGMIF- 325 (385)
Q Consensus 258 ~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~-~ga-Div~~S~hK~l--~GprgG~I~- 325 (385)
..+++| ...+ +++|.++|+++|++||+|++|..+ ..++..++ .+ .+. |++++|+||++ +|+|.|+++
T Consensus 181 ~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 259 (406)
T 1xi9_A 181 INPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLM-TYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYF 259 (406)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTC-BSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEE
T ss_pred ECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccc-ccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEE
Confidence 766655 4444 899999999999999999998543 33322111 11 245 78899999998 477789888
Q ss_pred -EeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 326 -FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 326 -~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
.+++. ..++.+.+....... .+++....+++..+++
T Consensus 260 ~~~~~~--~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~ 296 (406)
T 1xi9_A 260 VDPENK--LSEVREAIDRLARIR--LCPNTPAQFAAIAGLT 296 (406)
T ss_dssp ECTTCT--THHHHHHHHHHHHHT--CCSCSHHHHHHHHHHH
T ss_pred ecCchh--HHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHh
Confidence 66510 002444443322111 2334444555566664
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=171.60 Aligned_cols=222 Identities=11% Similarity=0.032 Sum_probs=153.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCC--CCCcceeecCCcHHHHHHHHHHhccCC--------CEEeecCCCCCccccCCccc
Q 016668 143 NEYIDELETLCQKRALAAFNLDE--NKWGVNVQPLSGSPANFEVYTAILKPH--------DRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 143 ~~~~~~le~~~~~~la~lfg~~~--~~~~~~V~~~sGs~A~~~a~~all~pG--------D~Vl~~~~~~ggh~s~~~~~ 212 (385)
.+...++|+.+++++++++|.+. +.. ..+.+++|++|+..++.++.++| |+|++..+.|.++.
T Consensus 134 ~p~~~~le~~l~~~la~~~g~~~~~~~v-~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~------ 206 (514)
T 3mad_A 134 WPSTAKFEAEVVAMTAHMLGGDAAGGTV-CGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD------ 206 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHTTGGGGTSCC-EEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH------
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCccCCc-ceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH------
Confidence 34556888888999999999983 111 12566778889999999998877 99999988665432
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CCCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
+.+...|..+..++ +++ ++.+|+++|++.+++ ++++|+++.+++ |...|+++|.++|+++|++|++|++|+.
T Consensus 207 --~~~~~~G~~v~~v~--~~~-~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~ 280 (514)
T 3mad_A 207 --KAAQYFGIKLVRTP--LDA-DYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG 280 (514)
T ss_dssp --HHHHHHTCEEEEEC--BCT-TSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred --HHHHHcCCeeEEee--eCC-CCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEeccccc
Confidence 23445676555555 553 678999999999965 789988877765 5678999999999999999999999864
Q ss_pred cccc----cCc--ccCCC--CCCcEEEECCCccCccc-cEEEEEEeCCCCchhHHHHHHh---------hccCCCccCCC
Q 016668 291 GLVA----ASV--VADPF--KYCDVVTTTTHKSLRGP-RGGMIFFKKDPVLGVELESAIN---------NAVFPGLQGGP 352 (385)
Q Consensus 291 Gli~----~g~--~~~p~--~gaDiv~~S~hK~l~Gp-rgG~I~~~~~~~~~~~~~~~i~---------~~~fp~~qg~p 352 (385)
+... .|. .+..+ .++|++++|+||++.|+ +.|+++++++ .+..... ....+...|++
T Consensus 281 ~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~gs~ 355 (514)
T 3mad_A 281 FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRP-----DLLHYQYFIAADWPGGLYFSPTFAGSR 355 (514)
T ss_dssp TTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSH-----HHHTTTCEEESSCTTCSEEESSSCSSC
T ss_pred ccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCH-----HHhccccccccccCCCcccCCccCCCC
Confidence 4321 121 11111 27899999999996555 5688888874 2222110 01123345666
Q ss_pred hHHHHHHHHHHHHHhhCchHHHHHHHHhcc
Q 016668 353 HNHTIGGLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 353 ~~~~iaala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
....++++.++++.+...++++..+++.++
T Consensus 356 ~~~~~~a~~aal~~l~~~~~~~~~~~~~~~ 385 (514)
T 3mad_A 356 PGALSATAWAAMLSLGEEGYLDATRRILQA 385 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 667677777777766555556555555443
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-18 Score=164.34 Aligned_cols=227 Identities=16% Similarity=0.169 Sum_probs=149.4
Q ss_pred HHHHHHhhhccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCccee
Q 016668 95 TKEKERQFKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNV 172 (385)
Q Consensus 95 ~~e~~~~~~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V 172 (385)
+++....+..|+|-..+|+ +++.|++++...+.. ..+||. +...++ ++.+++++|++.+ +|
T Consensus 9 ~~~~~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~--~~~y~~-------~~~~~l----r~~la~~~~~~~~----~i 71 (337)
T 3p1t_A 9 DTEVRAAAQAVCLAFNENPEAVEPRVQAAIAAAAAR--INRYPF-------DAEPRV----MRKLAEHFSCPED----NL 71 (337)
T ss_dssp -----CCCCCEECSSCCCCSCCCHHHHHHHHHHGGG--TTSCCT-------THHHHH----HHHHHHHHTSCGG----GE
T ss_pred cccccCCCCceEeeCCCCCCCCCHHHHHHHHHhhhh--hccCCC-------CchHHH----HHHHHHHhCcCHH----HE
Confidence 3343444466788777775 589999999876543 123432 222344 4567888998764 45
Q ss_pred ecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcC
Q 016668 173 QPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR 251 (385)
Q Consensus 173 ~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~ 251 (385)
.+++|+ +++..++.++ |||+|++.+|.|.++.. .+...|..+. +++++ +++.+|++++++. .+
T Consensus 72 ~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~--------~~~~~g~~~~--~v~~~-~~~~~d~~~l~~~---~~ 135 (337)
T 3p1t_A 72 MLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRA--------RIAVSGLRHF--EIGLT-DDLLLDPNDLAQV---SR 135 (337)
T ss_dssp EEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHH--------HHTTSCCEEE--EECBC-TTSSBCHHHHTTC---CT
T ss_pred EEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHH--------HHHHcCCEEE--EecCC-CCCCCCHHHHHhh---cC
Confidence 566665 5877777776 99999999987655421 3345666544 44454 3568999999875 26
Q ss_pred CcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccC--ccccEEEEEEe
Q 016668 252 PKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 252 pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l--~GprgG~I~~~ 327 (385)
+++|++..++|| ...+++++.++|++++. +++|++|. ++...+.......+.++++.|+||++ +|+|.|+++++
T Consensus 136 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~-~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~ 213 (337)
T 3p1t_A 136 DDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYV-DYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGP 213 (337)
T ss_dssp TEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTG-GGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECC
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCCh-hhccccccccccCCCEEEEeeCchhccCcchheEEEEeC
Confidence 789888877765 68899999999999997 56699984 33322211111124578999999998 57888999987
Q ss_pred CCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 328 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 328 ~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
+ ++.+.+.....+ .+++....+++..+++
T Consensus 214 ~------~~~~~l~~~~~~---~~~~~~~~~a~~~~l~ 242 (337)
T 3p1t_A 214 S------ELIAAMKRKQWF---CNVGTLDLHALEAALD 242 (337)
T ss_dssp H------HHHHHHHTTSCT---TCSCHHHHHHHHHHHT
T ss_pred H------HHHHHHHhhcCC---CCCCHHHHHHHHHHhC
Confidence 7 677777664332 2455555555555554
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-18 Score=166.57 Aligned_cols=234 Identities=13% Similarity=0.093 Sum_probs=153.5
Q ss_pred ccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHH-HHHHHHHHHHHHcC--CCCCCCcceeecCCcH
Q 016668 104 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDE-LETLCQKRALAAFN--LDENKWGVNVQPLSGS 178 (385)
Q Consensus 104 ~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~-le~~~~~~la~lfg--~~~~~~~~~V~~~sGs 178 (385)
-+++...++ .+++.|.+++...+... ..+|+. + ..+ +++..++++.+.+| ++.+ ..+.+++|+
T Consensus 30 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-----~---~~~~lr~~la~~l~~~~g~~~~~~---~v~~t~g~~ 97 (390)
T 1d2f_A 30 LLPFTISDMDFATAPCIIEALNQRLMHG-VFGYSR-----W---KNDEFLAAIAHWFSTQHYTAIDSQ---TVVYGPSVI 97 (390)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCCC-----S---CCHHHHHHHHHHHHHHSCCCCCGG---GEEEESCHH
T ss_pred eeEeeecCCCCCCCHHHHHHHHHHHhCC-CCCCCC-----C---ChHHHHHHHHHHHHHhcCCCCCHH---HEEEcCCHH
Confidence 355543333 46899999998876432 223433 1 236 77777888888888 4442 223444556
Q ss_pred HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC--CCCCCHHHHHHHhhhcCCcEEE
Q 016668 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLII 256 (385)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~--~~~iD~d~le~~i~~~~pklIi 256 (385)
+|+..++.++++|||+|++.+|.|.++.. .+...|..+..++ ++++ ++.+|+++|++.++..++|+|+
T Consensus 98 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~~v~--~~~~~~~~~~d~~~l~~~l~~~~~~~v~ 167 (390)
T 1d2f_A 98 YMVSELIRQWSETGEGVVIHTPAYDAFYK--------AIEGNQRTVMPVA--LEKQADGWFCDMGKLEAVLAKPECKIML 167 (390)
T ss_dssp HHHHHHHHHSSCTTCEEEEEESCCHHHHH--------HHHHTTCEEEEEE--CEECSSSEECCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHHHHH--------HHHHCCCEEEEee--cccCCCccccCHHHHHHHhccCCCeEEE
Confidence 79999999999999999999887655321 2345566555454 4322 2358999999998654789888
Q ss_pred EcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCC---CC-CC-cEEEECCCccC--ccccEEEE
Q 016668 257 AGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADP---FK-YC-DVVTTTTHKSL--RGPRGGMI 324 (385)
Q Consensus 257 ~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p---~~-ga-Div~~S~hK~l--~GprgG~I 324 (385)
+..+++| ...+ +++|.++|+++|++||+|++|.. +...|..+.+ +. .. |+ +.|+||++ +|.|.|++
T Consensus 168 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~ 245 (390)
T 1d2f_A 168 LCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMD-MVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYG 245 (390)
T ss_dssp EESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTT-CBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEE
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEE
Confidence 7766665 3444 89999999999999999999854 3333322212 22 22 77 99999997 57788999
Q ss_pred EEeCCCCchhHHHHHHhhccC-CCccCCChHHHHHHHHHHHHH
Q 016668 325 FFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~~~f-p~~qg~p~~~~iaala~Al~e 366 (385)
+++++ ++.+.+..... ....++++....++...+++.
T Consensus 246 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 283 (390)
T 1d2f_A 246 IIENS-----SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ 283 (390)
T ss_dssp EECSH-----HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH
T ss_pred EECCH-----HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhc
Confidence 98653 56666654432 122234555555555566654
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-19 Score=175.89 Aligned_cols=261 Identities=13% Similarity=0.068 Sum_probs=160.5
Q ss_pred hhcccCChHHHHHHHHHHHHh--hhccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQ--FKSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~--~~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~ 156 (385)
+++..+.++.+..+.+...+. +.-+++...++. .++.|.+++...+......+|+.. .|.+ ++++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g~~---~lr~~ia~~ 97 (404)
T 2o1b_A 24 NKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAF---HGKE---AFKQAIVDF 97 (404)
T ss_dssp HHHHTSCCCTTC-------CCCSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCT---TCCH---HHHHHHHHH
T ss_pred hHhhhCCchHHHHHHHHHHhcCCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCC---CCCH---HHHHHHHHH
Confidence 344555554443333322211 123566544443 478999998877643211234331 2333 788777788
Q ss_pred HHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC
Q 016668 157 ALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (385)
Q Consensus 157 la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 236 (385)
+.+.+|.+.+.....+++++|++|+..++.++++|||+|++.+|.|.++.. .+...|..+..++ .++++.
T Consensus 98 ~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~~~~v~--~~~~~~ 167 (404)
T 2o1b_A 98 YQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLA--------GVLLADGKPVPLN--LEPPHY 167 (404)
T ss_dssp HHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHH--------HHHHTTCEEEEEE--CCTTTC
T ss_pred HHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHCCCEEEEec--cCcccC
Confidence 888889862100012444555679999999999999999999987655421 2345566544444 543344
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-----CCc
Q 016668 237 LVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-----YCD 306 (385)
Q Consensus 237 ~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-----gaD 306 (385)
.+|+++|++.++. ++|+|++..++|| ...+ +++|.++|+++|++||+|++|.. +...+...+.+. +.|
T Consensus 168 ~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~ 245 (404)
T 2o1b_A 168 LPDWSKVDSQIID-KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGA-FGFDAKNPSILASENGKDVA 245 (404)
T ss_dssp CCCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTT-CBSSSCCCCGGGSTTHHHHE
T ss_pred cCCHHHHHHhhcc-CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCCCChhhcCCCCCCE
Confidence 6899999988864 6899988766665 4443 78899999999999999999854 333332222221 235
Q ss_pred EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 307 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
++++|+||+| +|+|.|++++++ ++.+++........ .+++....++...+++.
T Consensus 246 i~~~s~sK~~g~~G~r~G~~~~~~------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~ 300 (404)
T 2o1b_A 246 IEIYSLSKGYNMSGFRVGFAVGNK------DMIQALKKYQTHTN-AGMFGALQDAAIYALNH 300 (404)
T ss_dssp EEEEESTTTTTCGGGCCEEEEECH------HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHH
T ss_pred EEEEecchhccCchhheEeEecCH------HHHHHHHHHHhhcc-CCCCHHHHHHHHHHHhc
Confidence 8899999998 577889999876 56666654322211 23445555555666654
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=190.64 Aligned_cols=216 Identities=15% Similarity=0.089 Sum_probs=146.4
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccc-cccCcceEEEEecc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGTSIYFESMPYR 230 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~-~~~~g~~~~~i~~~ 230 (385)
++++++++||++. .+.+++|+ .||.+++.++++|||+|++..+.|.++.. . +.+.|..+..++..
T Consensus 178 ~e~~lA~~~gae~-----~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~--------~~~~l~Ga~~v~v~~~ 244 (730)
T 1c4k_A 178 AEKHAARVYNADK-----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYN--------SALAMAGGRPVYLQTN 244 (730)
T ss_dssp HHHHHHHHTTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHTTTTCCEEEEECEE
T ss_pred HHHHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHH--------HHHHHCCCEEEEEeCC
Confidence 5668999999986 35567776 69999999999999999999986654321 2 34567655544432
Q ss_pred ccCC--CCCCCHHHH-----HHHhhhc--------CC-cEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEEecccccccc
Q 016668 231 LDES--TGLVDYDML-----EKTAILF--------RP-KLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLV 293 (385)
Q Consensus 231 ~~~~--~~~iD~d~l-----e~~i~~~--------~p-klIi~~~s~-~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli 293 (385)
.+.- .+.+|+++| ++.+++. +| |+|+++.++ +|...|+++|+++|+++|++|++|++|+.++.
T Consensus 245 ~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~ 324 (730)
T 1c4k_A 245 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ 324 (730)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEcccccccc
Confidence 2100 123677777 8888653 12 888776554 46778999999999999999999999976655
Q ss_pred ccCccc--CCCC----CCc----EEEECCCccCcccc-EEEEEEeCCCC-c---hhHHHHHHhhccCCCccCCChHHHHH
Q 016668 294 AASVVA--DPFK----YCD----VVTTTTHKSLRGPR-GGMIFFKKDPV-L---GVELESAINNAVFPGLQGGPHNHTIG 358 (385)
Q Consensus 294 ~~g~~~--~p~~----gaD----iv~~S~hK~l~Gpr-gG~I~~~~~~~-~---~~~~~~~i~~~~fp~~qg~p~~~~ia 358 (385)
+.+..+ ++++ ++| ++++|+||+|+||+ ||+|+++++.+ . ..+ ..+++........++|+...++
T Consensus 325 f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~-~~~~~~~~~~~~stsp~~~~ia 403 (730)
T 1c4k_A 325 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCD-HKHFNNSFNLFMSTSPFYPMYA 403 (730)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCC-HHHHHHHHHHHSCSSCCHHHHH
T ss_pred cCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccC-HHHHHHHHHHhCCCCCcHHHHH
Confidence 433221 3332 677 99999999999987 47777776421 0 001 1233333222234678999999
Q ss_pred HHHHHHHHhhCchHHHHHHHHhcc
Q 016668 359 GLAVCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 359 ala~Al~e~~~~~~~~y~~~v~~~ 382 (385)
++.+|++.+..++..++.++++++
T Consensus 404 al~aA~~~l~~~~g~~~~~~~~~~ 427 (730)
T 1c4k_A 404 ALDVNAAMQEGEAGRKLWHDLLIT 427 (730)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999876553445555555543
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=170.47 Aligned_cols=200 Identities=20% Similarity=0.161 Sum_probs=143.1
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+++..+++..++.|++++...+... . |..+ +...++ ++.+++++|.+. .+.+++|+.|+..+
T Consensus 33 id~~~~~~~~~~~v~~a~~~~~~~~---~-----y~~~-~~~~~l----~~~la~~~~~~~-----~v~~~~Gt~a~~~~ 94 (399)
T 2oga_A 33 LDLKAAYEELRAETDAAIARVLDSG---R-----YLLG-PELEGF----EAEFAAYCETDH-----AVGVNSGMDALQLA 94 (399)
T ss_dssp CCHHHHHHHTHHHHHHHHHHHHHHT---C-----CSSS-HHHHHH----HHHHHHHTTSSE-----EEEESCHHHHHHHH
T ss_pred cccCcCCCCCCHHHHHHHHHHHhcC---C-----CCCc-hhHHHH----HHHHHHHHCCCe-----EEEecCHHHHHHHH
Confidence 4555555555688999988776531 1 2112 333344 456888999874 47788999999999
Q ss_pred HHHh-ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 016668 185 YTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP 263 (385)
Q Consensus 185 ~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~ 263 (385)
+.++ ++|||+|+++++.|.++.. .+...|..+..++ ++++++.+|++++++.+++ ++++|++++ .+|
T Consensus 95 l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~--~~~~~~~~d~~~l~~~i~~-~~~~v~~~n-~tG 162 (399)
T 2oga_A 95 LRGLGIGPGDEVIVPSHTYIASWL--------AVSATGATPVPVE--PHEDHPTLDPLLVEKAITP-RTRALLPVH-LYG 162 (399)
T ss_dssp HHHTTCCTTCEEEEESSSCTHHHH--------HHHHTTCEEEEEC--BCSSSSSBCHHHHHHHCCT-TEEEECCBC-GGG
T ss_pred HHHhCCCCcCEEEECCCccHHHHH--------HHHHCCCEEEEEe--cCCCCCCcCHHHHHHhcCC-CCeEEEEeC-CcC
Confidence 9999 9999999999987655321 3345676554444 5544678999999999865 688887643 356
Q ss_pred CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCC--ccCccc-cEEEEEEeCCCCchhHHHHH
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGP-RGGMIFFKKDPVLGVELESA 339 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~h--K~l~Gp-rgG~I~~~~~~~~~~~~~~~ 339 (385)
...|+++|.++|+++|+++|+|++|..|....+. ++. ..|++++|+| |++.+| +||+++++++ ++.++
T Consensus 163 ~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~-----~~~~~ 234 (399)
T 2oga_A 163 HPADMDALRELADRHGLHIVEDAAQAHGARYRGR---RIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDP-----ELAER 234 (399)
T ss_dssp CCCCHHHHHHHHHHHTCEECEECTTCTTCEETTE---ETTCTTCEEEEECCTTSSSCCSSCCEEEEESCH-----HHHHH
T ss_pred CccCHHHHHHHHHHcCCEEEEECcccccCccCCe---ecccccCEEEEeCCCCccCCcCCceEEEEeCCH-----HHHHH
Confidence 7789999999999999999999999766443221 122 3699999995 998553 8899998754 66666
Q ss_pred Hhh
Q 016668 340 INN 342 (385)
Q Consensus 340 i~~ 342 (385)
+..
T Consensus 235 l~~ 237 (399)
T 2oga_A 235 LRM 237 (399)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=172.52 Aligned_cols=199 Identities=8% Similarity=0.018 Sum_probs=139.1
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCC--CcceeecCCcHHHHHHHHHHhc
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK--WGVNVQPLSGSPANFEVYTAIL 189 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~--~~~~V~~~sGs~A~~~a~~all 189 (385)
.+.++.+.+++.+.+..... . +...+...++|+.+++++++++|++.+. ....+.+.+||+||..++.++.
T Consensus 52 ~~~~~~v~e~~~~a~~~~~~-~------~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~ 124 (452)
T 2dgk_A 52 TWDDENVHKLMDLSINKNWI-D------KEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK 124 (452)
T ss_dssp CCCCHHHHHHHHHTTTCBTT-C------TTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccCCC-C------hhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH
Confidence 45678899988766542211 1 1123455689999999999999998642 1113566778889999988876
Q ss_pred c--------CC-----CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEE
Q 016668 190 K--------PH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256 (385)
Q Consensus 190 ~--------pG-----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi 256 (385)
+ +| |+|++++ .| .++. +.+...|..+..+ +++++++.+|+++|++.+++ +|++|+
T Consensus 125 ~~~~~~~~~~G~~~~~~~vi~~~-~h---~~~~-----~~~~~~G~~v~~v--~~~~~~~~~d~~~l~~~i~~-~t~~v~ 192 (452)
T 2dgk_A 125 WRWRKRMEAAGKPTDKPNLVCGP-VQ---ICWH-----KFARYWDVELREI--PMRPGQLFMDPKRMIEACDE-NTIGVV 192 (452)
T ss_dssp HHHHHHHHHTTCCCSCCEEEESS-CC---HHHH-----HHHHHTTCEEEEC--CCBTTBCSCCHHHHHHHCCT-TEEEEE
T ss_pred HHHHHHHHhcCCCCCCcEEEECC-Cc---HHHH-----HHHHHcCceEEEE--ecCCCCCeECHHHHHHHHhh-CCEEEE
Confidence 4 66 5888876 44 2221 2345667754444 45544689999999999965 688888
Q ss_pred EcCCCC--CCCCCHHHHHHHHHHc------CcEEEEecccccccc--ccCcccCC--CCCCcEEEECCCccCcc-ccEEE
Q 016668 257 AGASAY--PRDFDYPRMRQIADAV------GALLMMDMAHISGLV--AASVVADP--FKYCDVVTTTTHKSLRG-PRGGM 323 (385)
Q Consensus 257 ~~~s~~--~~~~dl~~I~~ia~~~------ga~livD~ah~~Gli--~~g~~~~p--~~gaDiv~~S~hK~l~G-prgG~ 323 (385)
+..+++ |...|+++|.++|+++ |+++++|++|+.+.. ..+..+.. +.++|++++++||++.+ ++.|+
T Consensus 193 ~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~ 272 (452)
T 2dgk_A 193 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGW 272 (452)
T ss_dssp CBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred EEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEE
Confidence 776654 5678999999999996 999999999865532 12211222 23789999999998744 56799
Q ss_pred EEEeCC
Q 016668 324 IFFKKD 329 (385)
Q Consensus 324 I~~~~~ 329 (385)
++++++
T Consensus 273 ~~~~~~ 278 (452)
T 2dgk_A 273 VIWRDE 278 (452)
T ss_dssp EEESSG
T ss_pred EEEcCH
Confidence 999764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-18 Score=167.65 Aligned_cols=196 Identities=15% Similarity=0.157 Sum_probs=140.4
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP 191 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~p 191 (385)
..++.+++++...+.+.|. +. .| +...+++ +.+++++|.+. .+.+.||+.|+..++.++ ++|
T Consensus 9 ~~~~~v~~a~~~~~~~~~~---~~----~g-~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~~~~~l~~~~ 71 (394)
T 1o69_A 9 HMGGNELKYIEEVFKSNYI---AP----LG-EFVNRFE----QSVKDYSKSEN-----ALALNSATAALHLALRVAGVKQ 71 (394)
T ss_dssp ---CCHHHHHHHHHHHTTT---SC----TT-HHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHcCCc---cC----CC-hHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCCCC
Confidence 4567788888777754331 10 13 3333444 56888889853 366778889999999999 999
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCCCCCHH
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPRDFDYP 269 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~~~~~dl~ 269 (385)
||+|+++++.|.++.. .+...|..+..++ ++ +++.+|++++++.+++. ++++|++.+ .+|...|++
T Consensus 72 gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~-~~G~~~~l~ 139 (394)
T 1o69_A 72 DDIVLASSFTFIASVA--------PICYLKAKPVFID--CD-ETYNIDVDLLKLAIKECEKKPKALILTH-LYGNAAKMD 139 (394)
T ss_dssp TCEEEEESSSCGGGTH--------HHHHTTCEEEEEC--BC-TTSSBCHHHHHHHHHHCSSCCCEEEEEC-GGGCCCCHH
T ss_pred CCEEEECCCccHHHHH--------HHHHcCCEEEEEE--eC-CCCCcCHHHHHHHHhcccCCceEEEEEC-CCCChhhHH
Confidence 9999999987765421 3345676544444 55 46789999999998753 689888765 466778999
Q ss_pred HHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 270 RMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 270 ~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+|.++|+++|+++++|++|+.|+...+.....+..+|+.++|.||.++|+++|+++++++ ++.+++..
T Consensus 140 ~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~-----~l~~~l~~ 207 (394)
T 1o69_A 140 EIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNK-----EKIEKARF 207 (394)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHH
T ss_pred HHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCH-----HHHHHHHH
Confidence 999999999999999999987776544321123356788888899998889999999643 56666654
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=173.12 Aligned_cols=234 Identities=18% Similarity=0.090 Sum_probs=151.2
Q ss_pred hccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHH
Q 016668 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (385)
Q Consensus 103 ~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A 180 (385)
.-++|...++ ..++.+.+++ ..+.+. ..+|+.. .|. .++++.+.+++.+.+|.+.. ....+.+.+|++|
T Consensus 44 ~~i~l~~~~~~~~~~~~v~~a~-~~l~~~-~~~y~~~---~g~---~~l~~~la~~~~~~~g~~~~-~~~v~~~~g~t~a 114 (409)
T 2gb3_A 44 RIHHLNIGQPDLKTPEVFFERI-YENKPE-VVYYSHS---AGI---WELREAFASYYKRRQRVDVK-PENVLVTNGGSEA 114 (409)
T ss_dssp EEEECSSCCCCSCCCTHHHHHH-HHTCCS-SCCCCCT---TCC---HHHHHHHHHHHHHTSCCCCC-GGGEEEESHHHHH
T ss_pred CEEeccCCCCCCCCCHHHHHHH-HHHhcC-CCCCCCC---CCc---HHHHHHHHHHHHHHhCCCCC-HHHEEEeCCHHHH
Confidence 3456654444 3578999999 776432 2234331 233 37777777777777775431 1123445567789
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC-CCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
+..++.++++|||+|++.++.|.++.. .+...|..+..++ .++ ++..+ +++|++.+++ ++++|++..
T Consensus 115 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~~~~~~~~-~~~l~~~l~~-~~~~v~~~~ 182 (409)
T 2gb3_A 115 ILFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGVKLIPVT--RRMEEGFAI-PQNLESFINE-RTKGIVLSN 182 (409)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTCEEEEEE--CCGGGTSCC-CTTGGGGCCT-TEEEEEEES
T ss_pred HHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEec--cCCCCCCcc-HHHHHHhhCc-CCeEEEECC
Confidence 999999999999999999987654321 2345566555444 442 23344 7888888865 788888877
Q ss_pred CCCC--CCC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CCCcEEEECCCccC--ccccEEEEEEeCC
Q 016668 260 SAYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 260 s~~~--~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~gaDiv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
+++| ... ++++|.++|+++|++||+|++|.. +...+.....+ .+.|++++|+||++ +|.|.|+++++++
T Consensus 183 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 261 (409)
T 2gb3_A 183 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSE-IVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE 261 (409)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccc-cccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcH
Confidence 6654 333 589999999999999999999864 33333222212 25689999999998 5667899999883
Q ss_pred CCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 330 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 330 ~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+.+........ +++....+++..+|+
T Consensus 262 -----~l~~~l~~~~~~~~--~~~~~~~~a~~~~l~ 290 (409)
T 2gb3_A 262 -----ELISHAMKLAQGRL--APPLLEQIGSVGLLN 290 (409)
T ss_dssp -----HHHHHHHHHHHHSC--CCCHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHhccC--CCCHHHHHHHHHHHh
Confidence 46565554332222 344455555555663
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=186.62 Aligned_cols=213 Identities=14% Similarity=0.051 Sum_probs=146.9
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
+++.+++++|.+. .+.+++|+ .||.+++.++++|||+|++..+.|.+... .+...|..+..++...
T Consensus 210 ~ee~la~l~G~d~-----~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~--------~~~~~G~~~v~v~~~~ 276 (755)
T 2vyc_A 210 SEKYAARVFGADR-----SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--------GLMLTGAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHHCCEEEEECCCB
T ss_pred HHHHHHHHhCCCc-----eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH--------HHHHcCCEEEEEeCCC
Confidence 5667899999975 35567775 69999999999999999999886544321 2345676555544322
Q ss_pred cCC--CCCC-----CHHHHHHHhhhc-CC--------cEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEEeccccccccc
Q 016668 232 DES--TGLV-----DYDMLEKTAILF-RP--------KLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVA 294 (385)
Q Consensus 232 ~~~--~~~i-----D~d~le~~i~~~-~p--------klIi~~~s~-~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~ 294 (385)
+.. .+.+ |+++|++.+++. ++ ++++++.++ +|...|+++|+++|+++|++|++|++|+.++.+
T Consensus 277 ~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~ 356 (755)
T 2vyc_A 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF 356 (755)
T ss_dssp CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGG
T ss_pred CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchhccc
Confidence 100 1235 999999998652 23 477766554 477889999999999999999999999766544
Q ss_pred cCcc--cCCCCC--CcE------EEECCCccCcccc-EEEEEEeCC--CCchhHHHHHHhhccCCCccCCChHHHHHHHH
Q 016668 295 ASVV--ADPFKY--CDV------VTTTTHKSLRGPR-GGMIFFKKD--PVLGVELESAINNAVFPGLQGGPHNHTIGGLA 361 (385)
Q Consensus 295 ~g~~--~~p~~g--aDi------v~~S~hK~l~Gpr-gG~I~~~~~--~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala 361 (385)
.+.. .+++.+ +|+ +++|+||+|+||+ ||+++++++ .+. ..+++........++|+...++++.
T Consensus 357 ~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~----~~~~~~~~~~~~s~sp~~~~iaal~ 432 (755)
T 2vyc_A 357 NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAIN----FSRFNQAYMMHATTSPLYAICASND 432 (755)
T ss_dssp CGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCC----HHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred CcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccC----HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3321 233334 676 9999999999997 678888765 221 1223322222234679999999999
Q ss_pred HHHHHhhCchHHHHHHHHhcc
Q 016668 362 VCLKHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 362 ~Al~e~~~~~~~~y~~~v~~~ 382 (385)
+|++.+..++..++.++++++
T Consensus 433 aA~~~l~~~gg~~~~~~~~~~ 453 (755)
T 2vyc_A 433 VAVSMMDGNSGLSLTQEVIDE 453 (755)
T ss_dssp HHHHHHSTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 999987765455666665543
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=168.66 Aligned_cols=241 Identities=10% Similarity=0.015 Sum_probs=157.8
Q ss_pred ccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 104 SLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 104 ~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
.+.+.++...+++.|++++...+.+... ++.. + +..+ .++.+.+++++++++|.+..+ ..+.+.||+.|+..
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~-~~~~-~---~~~~-~~~~~~~~~~la~~~g~~~~~--~v~~~~g~t~al~~ 76 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIG-VISH-R---SKKF-EEVYKTASDNLKTLLELPSNY--EVLFLASATEIWER 76 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTT-TSCT-T---SHHH-HHHHHHHHHHHHHHTTCCTTE--EEEEESCHHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCcc-CcCC-C---CHHH-HHHHHHHHHHHHHHhCCCCCc--EEEEeCCchHHHHH
Confidence 3667788888999999888777654321 1111 1 2222 245555788999999986422 23455677889999
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC-
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY- 262 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~- 262 (385)
++.++++| +.+++..+ |+++.+. ..+...|..+..++ .+ .++.+|+++++ ++ .++|+|+++.+++
T Consensus 77 ~~~~l~~~-~~i~~~~~----~~~~~~~---~~~~~~g~~~~~v~--~~-~~~~~d~~~l~--~~-~~~~~v~~~~~~np 142 (362)
T 3ffr_A 77 IIQNCVEK-KSFHCVNG----SFSKRFY---EFAGELGREAYKEE--AA-FGKGFYPADIT--VP-ADAEIICLTHNETS 142 (362)
T ss_dssp HHHHHCSS-EEEEEECS----HHHHHHH---HHHHHTTCEEEEEE--CC-TTCCCCGGGCC--CC-TTCCEEEEESEETT
T ss_pred HHHhccCC-cEEEEcCc----HHHHHHH---HHHHHhCCCeEEEe--cC-CCCCCCHHHHh--cc-CCccEEEEEcCCCC
Confidence 99999988 55554433 2222111 12334566555555 43 35689999998 43 4789998877654
Q ss_pred -CCCCCHHHHHHHHHHc-CcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH
Q 016668 263 -PRDFDYPRMRQIADAV-GALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 -~~~~dl~~I~~ia~~~-ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~ 339 (385)
|...|+++|.++|+++ |+++++|++|..|.. +.++..+|++++|+||+|.||.| |+++.++ ++.++
T Consensus 143 tG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~-----~~~~~~~d~~~~s~~K~~~~~~G~g~~~~~~------~~~~~ 211 (362)
T 3ffr_A 143 SGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP-----KFDWTKIDSVFFSVQKCFGLPAGLGVWILND------RVIEK 211 (362)
T ss_dssp TTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS-----CCCTTSCSEEEEETTSTTCCCSCCEEEEEEH------HHHHH
T ss_pred cceeCCHHHHHHHHHhCCCCEEEEecccccCCc-----ccChhHCcEEEEecccccCCCCceEEEEECH------HHHHH
Confidence 4678999999999999 999999999875532 22233489999999999986766 7877777 45554
Q ss_pred HhhccC--------------------CCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 340 INNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 340 i~~~~f--------------------p~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
+..... ....++++...++++..+++.+...++.+..+
T Consensus 212 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 269 (362)
T 3ffr_A 212 SKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRK 269 (362)
T ss_dssp HHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHH
Confidence 433211 11145677777888888887554433333333
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-18 Score=173.74 Aligned_cols=176 Identities=15% Similarity=0.102 Sum_probs=129.4
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc--------------CCCEEeecCCCCCcccc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--------------PHDRIMGLDLPHGGHLS 207 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--------------pGD~Vl~~~~~~ggh~s 207 (385)
..+...++|+.+.+|+++++|.+... ...+++++||.||..++.++.+ |+++|+++++.|.+..
T Consensus 129 ~~p~~~~le~~~~~~l~~~~g~~~~~-~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~- 206 (511)
T 3vp6_A 129 IAPVFVLMEQITLKKMREIVGWSSKD-GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK- 206 (511)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCSSS-CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHH-
T ss_pred cCchHHHHHHHHHHHHHHHhCCCCCC-CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHH-
Confidence 34667799999999999999998421 1246677889999988887754 6788998876543321
Q ss_pred CCccccccccccCcc---eEEEEeccccCCCCCCCHHHHHHHhhhcC-----CcEEEEcCCC--CCCCCCHHHHHHHHHH
Q 016668 208 HGFMTPKRRVSGTSI---YFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGASA--YPRDFDYPRMRQIADA 277 (385)
Q Consensus 208 ~~~~~~~~~~~~~g~---~~~~i~~~~~~~~~~iD~d~le~~i~~~~-----pklIi~~~s~--~~~~~dl~~I~~ia~~ 277 (385)
+.+...|. .+..++ ++ +++.+|+++|++.+++.+ |++|++..++ +|...|+++|+++|++
T Consensus 207 -------~~~~~~g~g~~~~~~v~--~d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~ 276 (511)
T 3vp6_A 207 -------KAGAALGFGTDNVILIK--CN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEK 276 (511)
T ss_dssp -------HHHHHTTSCGGGEEEEC--BC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHH
T ss_pred -------HHHHHcCCCCCcEEEee--cC-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHH
Confidence 23445555 455554 55 368999999999996532 7888776544 4677899999999999
Q ss_pred cCcEEEEeccccccccccCcccCCC---CCCcEEEECCCccCccccE-EEEEEeCC
Q 016668 278 VGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 278 ~ga~livD~ah~~Gli~~g~~~~p~---~gaDiv~~S~hK~l~Gprg-G~I~~~~~ 329 (385)
+|+++++|++|+.|......+...+ +++|++++++||+|.+|.+ |+++++++
T Consensus 277 ~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~ 332 (511)
T 3vp6_A 277 YNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK 332 (511)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST
T ss_pred cCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH
Confidence 9999999999987765433222222 3679999999999988865 78888775
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-18 Score=166.26 Aligned_cols=256 Identities=14% Similarity=0.072 Sum_probs=164.3
Q ss_pred hhcccCChHHHHHHHHHHHHh-----hhccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQ-----FKSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~-----~~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~ 153 (385)
.+++.+.++.+..+.+...+. +.-|+|-..++ .+++.|++++...+.. ..+|+.. .|.. ++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~---~g~~---~lr~~l 75 (396)
T 3jtx_A 4 TLLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHE--LEKYPLT---AGLP---ELRQAC 75 (396)
T ss_dssp HHHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGGG--GGSCCCT---TCCH---HHHHHH
T ss_pred hhhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhhh--ccCCCCC---CCcH---HHHHHH
Confidence 345566666665554433321 12355544333 3579999999877642 2245442 2333 677778
Q ss_pred HHHHHHHcCCC---CCCCcceeecCCcHHHHHHHHHHhccCC-----CEEeecCCCCCccccCCccccccccccCcceEE
Q 016668 154 QKRALAAFNLD---ENKWGVNVQPLSGSPANFEVYTAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (385)
Q Consensus 154 ~~~la~lfg~~---~~~~~~~V~~~sGs~A~~~a~~all~pG-----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (385)
++++.+.+|.+ .++. .+.+++|++|+..++.++++|| |+|++.+|.|.++.. .+...|..+.
T Consensus 76 a~~l~~~~g~~~~~~~~~--i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~--------~~~~~g~~~~ 145 (396)
T 3jtx_A 76 ANWLKRRYDGLTVDADNE--ILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG--------ATLLGGGEIH 145 (396)
T ss_dssp HHHHHHHTTTCCCCTTTS--EEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH--------HHHHTTCEEE
T ss_pred HHHHHHhcCCCCCCCCCe--EEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH--------HHHHcCCEEE
Confidence 88899999964 3201 2444555679999999999997 799999887654321 2345676555
Q ss_pred EEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCccc-
Q 016668 226 SMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA- 299 (385)
Q Consensus 226 ~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~- 299 (385)
.++ +++++..+|++++++.+++ ++|+|+++.++|| ...+ +++|.++|+++|+++|+|++|. ++...+..+
T Consensus 146 ~v~--~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~ 221 (396)
T 3jtx_A 146 FAN--CPAPSFNPDWRSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYS-EIYFDGNKPL 221 (396)
T ss_dssp EEE--CCTTTCCCCGGGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTT-TCCSTTCCCC
T ss_pred Eee--cCCCCCccCHHHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCc
Confidence 555 4544557899999998876 7899988777765 4555 5559999999999999999984 444443111
Q ss_pred CCC---------CCCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 300 DPF---------KYCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 300 ~p~---------~gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
..+ .+.++++.|+||++ +|.|.|++++++ ++.+.+....... ..+++....++...+++
T Consensus 222 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~ 291 (396)
T 3jtx_A 222 GCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDA------ELLKNFLLYRTYH-GSAMSIPVQRASIAAWD 291 (396)
T ss_dssp CHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECH------HHHHHHHHHHHHH-TCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCH------HHHHHHHHHHhhc-ccCCCHHHHHHHHHHhC
Confidence 111 24568899999974 678889998876 5666665432211 22445555555565664
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=168.55 Aligned_cols=190 Identities=15% Similarity=0.129 Sum_probs=140.4
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPH 192 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pG 192 (385)
.++.+++++...+.+.. + . ..+...+++ +.+++++|.+. .+.+.||+.|+..++.++ ++||
T Consensus 18 ~~~~~~~a~~~~~~~~~---~-----~-~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~al~~~~~~~~~~~g 79 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGW---I-----T-TGPKNQELE----AAFCRLTGNQY-----AVAVSSATAGMHIALMALGIGEG 79 (393)
T ss_dssp CCHHHHHHHHHHHHHTC---C-----S-SSHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHhcCC---c-----C-CChHHHHHH----HHHHHHhCCCc-----EEEecChHHHHHHHHHHcCCCCC
Confidence 56888899887775431 1 1 123333444 56888999864 366788899999999999 9999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHH
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMR 272 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~ 272 (385)
|+|++.++.|.++.. .+...|..+.. ++++++++.+|++++++.+++ ++|+|++.+ .+|...|+++|.
T Consensus 80 d~Vl~~~~~~~~~~~--------~~~~~g~~~~~--v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~-~~G~~~~~~~i~ 147 (393)
T 1mdo_A 80 DEVITPSMTWVSTLN--------MIVLLGANPVM--VDVDRDTLMVTPEHIEAAITP-QTKAIIPVH-YAGAPADLDAIY 147 (393)
T ss_dssp CEEEEESSSCHHHHH--------HHHHTTCEEEE--ECBCTTTCCBCHHHHHHHCCT-TEEEECCBC-GGGCCCCHHHHH
T ss_pred CEEEeCCCccHhHHH--------HHHHCCCEEEE--EeccCCcCCCCHHHHHHhcCC-CceEEEEeC-CCCCcCCHHHHH
Confidence 999999987655421 33456765444 446655578999999999865 788888764 366778999999
Q ss_pred HHHHHcCcEEEEeccccccccccCcccCCCCC-CcEEEECCC--ccCccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 273 QIADAVGALLMMDMAHISGLVAASVVADPFKY-CDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 273 ~ia~~~ga~livD~ah~~Gli~~g~~~~p~~g-aDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
++|+++|+++++|++|+.|....+. ++ + .|++++|+| |+++|+++|+++++++ ++.+++..
T Consensus 148 ~l~~~~~~~li~D~a~~~g~~~~~~---~~-~~~d~~~~S~~k~K~l~~~~~g~~~~~~~-----~~~~~l~~ 211 (393)
T 1mdo_A 148 ALGERYGIPVIEDAAHATGTSYKGR---HI-GARGTAIFSFHAIKNITCAEGGIVVTDNP-----QFADKLRS 211 (393)
T ss_dssp HHHHHHTCCBCEECTTCTTCEETTE---ET-TSSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHH
T ss_pred HHHHHcCCeEEEECccccCCeECCe---ec-CCCCeEEEeCCCCCccccccceEEEeCCH-----HHHHHHHH
Confidence 9999999999999999877654332 11 3 799999999 9998889999999743 56665543
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=170.10 Aligned_cols=200 Identities=17% Similarity=0.110 Sum_probs=141.3
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-c
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-L 189 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l 189 (385)
...+++.+++++...+.+.....|+. ..|.. ++.+.+++++++++|++. .+.+++|++|+..++.++ +
T Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~g~~---~l~~~l~~~la~~~g~~~-----~i~~~~gt~al~~~~~~~~~ 79 (418)
T 2c81_A 11 WPQHSDRTRRKIEEVFQSNRWAISGY---WTGEE---SMERKFAKAFADFNGVPY-----CVPTTSGSTALMLALEALGI 79 (418)
T ss_dssp SSCCCHHHHHHHHHHHHHTCCSTTSB---CCSSC---CHHHHHHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHhcCCccccCc---ccCCH---HHHHHHHHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCC
Confidence 34558999999988776431111321 22332 233345567899999874 477889999999999999 9
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHH
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYP 269 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~ 269 (385)
+|||+|+++++.|.++.. .+...|..+. .++++++++.+|++++++.+++ ++++|++++ .+|...|++
T Consensus 80 ~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~--~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~ 147 (418)
T 2c81_A 80 GEGDEVIVPSLTWIATAT--------AVLNVNALPV--FVDVEADTYCIDPQLIKSAITD-KTKAIIPVH-LFGSMANMD 147 (418)
T ss_dssp CTTCEEEEESSSCTHHHH--------HHHHTTCEEE--EECBCTTTCSBCHHHHGGGCCT-TEEEECCBC-CTTCCCCHH
T ss_pred CCcCEEEECCCccHhHHH--------HHHHcCCEEE--EEecCCCCCCcCHHHHHHhhCC-CCeEEEEeC-CcCCcccHH
Confidence 999999999987655421 3345676544 4446554678999999999865 688888764 367778999
Q ss_pred HHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECC--CccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 270 RMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT--HKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 270 ~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~--hK~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
+|.++|+++|++|++|++|+.|....+. ++. ..|+++.|+ ||++.+++||+++++++ ++.+++.
T Consensus 148 ~i~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~~~~~s~s~~K~~~~g~~g~~~~~~~-----~l~~~~~ 214 (418)
T 2c81_A 148 EINEIAQEHNLFVIEDCAQSHGSVWNNQ---RAGTIGDIGAFSCQQGKVLTAGEGGIIVTKNP-----RLFELIQ 214 (418)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHH
T ss_pred HHHHHHHHCCCEEEEECcccccCccCCE---ecccccceEEEeccCCcccCCCCeEEEEECCH-----HHHHHHH
Confidence 9999999999999999999776433221 122 236666666 99986558899998653 5655554
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=170.97 Aligned_cols=168 Identities=14% Similarity=0.056 Sum_probs=126.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|...|+ +++..+++|+ ++++++|.+. .+.++||+.|+..++.++++|||+|++.++.|++.....
T Consensus 73 ~~~y~r~--~~p~~~~le~----~lA~l~g~~~-----~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~--- 138 (415)
T 2fq6_A 73 ELFYGRR--GTLTHFSLQQ----AMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFC--- 138 (415)
T ss_dssp SCCCTTT--CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHH---
T ss_pred CccccCC--CCchHHHHHH----HHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHH---
Confidence 4555444 6676666665 6888999864 466789999999999999999999999998876643210
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHH--cCcEEEEeccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADA--VGALLMMDMAH 288 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~--~ga~livD~ah 288 (385)
...+...|..+..++ . .|++++++.+++ ++|+|++..++|| ...|+++|+++|++ +|+++++|++|
T Consensus 139 -~~~l~~~G~~v~~v~--~------~d~~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~ 208 (415)
T 2fq6_A 139 -SKILSKLGVTTSWFD--P------LIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTW 208 (415)
T ss_dssp -HHTGGGGTCEEEEEC--T------TCGGGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTT
T ss_pred -HHHHHHcCcEEEEEC--C------CCHHHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCC
Confidence 011234465444332 2 278999998865 6899998877765 67899999999999 99999999999
Q ss_pred cccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCC
Q 016668 289 ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (385)
Q Consensus 289 ~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~ 329 (385)
+.+.. ..|++ ++|++++|+||++.|+. +|+++++++
T Consensus 209 a~~~~-----~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~ 248 (415)
T 2fq6_A 209 AAGVL-----FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR 248 (415)
T ss_dssp TTTTS-----SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT
T ss_pred ccccc-----CCccccCCeEEEEeCccccCCCCCceEEEEEeCHH
Confidence 76532 23455 89999999999997654 799998874
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=170.01 Aligned_cols=212 Identities=20% Similarity=0.160 Sum_probs=146.4
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all 189 (385)
+...+++.|++++. .+ .+ + ..+++..++.++++||++..+ ..+.+.+|++|+..++.++
T Consensus 38 ~~~~~~~~v~~a~~-----~~----------~~-~--~~~~~~~~~~~a~~~g~~~~~--~~~~~~ggt~a~~~~~~~~- 96 (374)
T 2aeu_A 38 GGFLIDEKDKALLN-----TY----------IG-S--SYFAEKVNEYGLKHLGGDEND--KCVGFNRTSSAILATILAL- 96 (374)
T ss_dssp CCCCCCHHHHHHHT-----ST----------TH-H--HHHHHHHHHHHHHHHTCCTTE--EEEEESSHHHHHHHHHHHH-
T ss_pred CCCCCCHHHHHHHH-----Hh----------cC-c--hHHHHHHHHHHHHHhCCCCcc--eEEEEcChHHHHHHHHHhC-
Confidence 46678999999985 11 11 1 244555667778999984211 1466788889999999987
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcE-EEEcCCCCCC---C
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL-IIAGASAYPR---D 265 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pkl-Ii~~~s~~~~---~ 265 (385)
|||+|++.++.|++|.+.. ..+...|..+ +.+ .|++++++. + .++|+ |+++.+++|. .
T Consensus 97 -~gd~Vl~~~~~y~~~~~~~-----~~~~~~g~~~--~~v--------~d~~~l~~~-~-~~~~~~v~~~~p~nptG~~~ 158 (374)
T 2aeu_A 97 -KPKKVIHYLPELPGHPSIE-----RSCKIVNAKY--FES--------DKVGEILNK-I-DKDTLVIITGSTMDLKVIEL 158 (374)
T ss_dssp -CCSEEEEECSSSSCCTHHH-----HHHHHTTCEE--EEE--------SCHHHHHTT-C-CTTEEEEEECBCTTSCBCCH
T ss_pred -CCCEEEEecCCCCccHHHH-----HHHHHcCcEE--EEe--------CCHHHHHhc-C-CCccEEEEEccCCCCCCCCc
Confidence 9999999999877664310 1233456543 332 388999887 4 47899 8888777763 5
Q ss_pred CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhcc
Q 016668 266 FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV 344 (385)
Q Consensus 266 ~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~ 344 (385)
.++++|.++|+++|+++++|++|..+.......++++. +.|++++|+||+++||++|++++++ ++.+++....
T Consensus 159 ~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~------~~~~~l~~~~ 232 (374)
T 2aeu_A 159 ENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKK------ELVDKIYIEG 232 (374)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEH------HHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECH------HHHHHHHHhh
Confidence 68999999999999999999998655310110111333 6799999999999999999999987 5777665533
Q ss_pred CCCccCCChHHHHHHHHHHHHHh
Q 016668 345 FPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 345 fp~~qg~p~~~~iaala~Al~e~ 367 (385)
... .++++....++...+++..
T Consensus 233 ~~~-~~~~~~~~~~a~~~al~~~ 254 (374)
T 2aeu_A 233 TKF-GLEAQPPLLAGIYRALKNF 254 (374)
T ss_dssp HTT-TCBCCHHHHHHHHHHHHHC
T ss_pred ccc-cCCCCHHHHHHHHHHHHHH
Confidence 221 1235555666666677654
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=170.62 Aligned_cols=212 Identities=13% Similarity=0.142 Sum_probs=141.5
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+.++. ++.+.+++++++++|++. ..+++.|||.|+.+++. +++|||+|+++++.| .++.+. ..+...|
T Consensus 30 ~~~~~-~~~~~~~~~l~~~~~~~~----~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~---~~~~~~---~~~~~~g 97 (379)
T 3ke3_A 30 SKAFQ-EVMNDLLSNLKTVYNAEA----AVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGW---FSYRWT---QILEKGK 97 (379)
T ss_dssp SHHHH-HHHHHHHHHHHHHHTCSE----EEEEESCHHHHHHHHHH-HHCTTCEEEEEECSH---HHHHHH---HHHHHHC
T ss_pred CHHHH-HHHHHHHHHHHHHhCCCC----EEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCc---hhHHHH---HHHHHhC
Confidence 44544 455557889999999983 34556788999998774 568999999987643 222110 1122233
Q ss_pred c--eEEEEeccccC-----CC-CCCCHHHHHHHhhhcCCcEEEEcCC--CCCCCCC---HHHHHHHHHHcCcEEEEeccc
Q 016668 222 I--YFESMPYRLDE-----ST-GLVDYDMLEKTAILFRPKLIIAGAS--AYPRDFD---YPRMRQIADAVGALLMMDMAH 288 (385)
Q Consensus 222 ~--~~~~i~~~~~~-----~~-~~iD~d~le~~i~~~~pklIi~~~s--~~~~~~d---l~~I~~ia~~~ga~livD~ah 288 (385)
. .+..++.+.+. .. +.+|++++++.++..++++|++... .++...| +++|+++|+++|+++++|++|
T Consensus 98 ~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~ 177 (379)
T 3ke3_A 98 FAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIA 177 (379)
T ss_dssp CSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 2 33444432100 01 2689999999996557898877543 3466778 999999999999999999998
Q ss_pred cccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHhhcc---C---------------CC
Q 016668 289 ISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAV---F---------------PG 347 (385)
Q Consensus 289 ~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~~~~---f---------------p~ 347 (385)
+ |. .+..++ ++|++++|+||+|.||.| |++++++ ++.+++.... + .+
T Consensus 178 ~-g~-----~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 245 (379)
T 3ke3_A 178 S-GC-----VWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSA------AAIKKVESTESNCFSLDLKQWLTIMRAYENG 245 (379)
T ss_dssp C-TT-----CCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECH------HHHHHHHTCCCSCSTTCHHHHHHHHHHHHTT
T ss_pred c-CC-----ccccccccCCCEEEecchhhcCCCCceEEEEECH------HHHHhhhcCCCCceeecHHHHHHHHHhhhcc
Confidence 6 52 122222 789999999999988875 8888877 4555554211 0 01
Q ss_pred ---ccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 348 ---LQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 348 ---~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
..++++...++|+..|++.+...++.+..+
T Consensus 246 ~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~ 278 (379)
T 3ke3_A 246 GHAYHATMPTDSLRQFRDAILEAKEIGFDILRD 278 (379)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 124788899999999998776554444333
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=170.42 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=139.3
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all 189 (385)
++-.+++.+.+++...+... .|+. ..+...+++ +.+++++|.+. .+++.+|++|+..++.++.
T Consensus 26 p~~~~p~~~~~a~~~~~~~~---~y~~-----~~~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~~l~~l~ 88 (424)
T 2po3_A 26 PNRIDRARLYERLDRALDSQ---WLSN-----GGPLVREFE----ERVAGLAGVRH-----AVATCNATAGLQLLAHAAG 88 (424)
T ss_dssp CCCCCHHHHHHHHHHHHHHT---CCSS-----SCHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHhcC---Cccc-----CCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcC
Confidence 33344678888887766431 1221 023344554 46788888853 3667778889999999885
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHH
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYP 269 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~ 269 (385)
+||+|+++++.|.++.. .+...|..+. .++++++++.+|+++|++.+++ ++++|++.. .++...+++
T Consensus 89 -~gd~Vlv~~~~~~~~~~--------~~~~~G~~~~--~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~tG~~~~l~ 155 (424)
T 2po3_A 89 -LTGEVIMPSMTFAATPH--------ALRWIGLTPV--FADIDPDTGNLDPDQVAAAVTP-RTSAVVGVH-LWGRPCAAD 155 (424)
T ss_dssp -CCSEEEEESSSCTHHHH--------HHHHTTCEEE--EECBCTTTSSBCHHHHGGGCCT-TEEEEEEEC-GGGCCCCHH
T ss_pred -CCCEEEECCCccHHHHH--------HHHHcCCEEE--EEecCCCcCCcCHHHHHHhhCc-CCcEEEEEC-CCCCcCCHH
Confidence 89999999987655421 3345676544 4446655678999999998865 688888754 356778999
Q ss_pred HHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCC--ccCccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 270 RMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 270 ~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+|.++|+++|++||+|++|..|+...+. ++. ..|++++|+| |+|+|+++|+++++++ ++.+++..
T Consensus 156 ~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~-----~l~~~l~~ 223 (424)
T 2po3_A 156 QLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLGDAEVFSFHATKAVNAFEGGAVVTDDA-----DLAARIRA 223 (424)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHH
T ss_pred HHHHHHHHcCCEEEEECccccCCeECCe---ecccccCEEEEeCCCCCCccCCCCeEEEeCCH-----HHHHHHHH
Confidence 9999999999999999999877765432 232 4689999988 8898899999999843 56666654
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=163.57 Aligned_cols=248 Identities=15% Similarity=0.032 Sum_probs=157.4
Q ss_pred CChHHHHHHHHHHHHhh-h--ccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016668 86 ADPEVCEIITKEKERQF-K--SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (385)
Q Consensus 86 ~dp~~~~~i~~e~~~~~-~--~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~l 160 (385)
++|+.+..+.+...+.. + -++|-..++ .+++.|.+++...+.. ..+|+. ..|.+ ++++..++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~---~~g~~---~lr~~la~~l~~~ 75 (376)
T 3ezs_A 4 FEPYPFERLRALLKEITPKKRGLDLGIGEPQFETPKFIQDALKNHTHS--LNIYPK---SAFEE---SLRAAQRGFFKRR 75 (376)
T ss_dssp CCCCHHHHHHHHHTTCCCSSCCCBCSSCCCCSCCCHHHHHHHHTTGGG--GGSCCC---TTCCH---HHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHhhhccCCEEEeCCCCCCCCCCHHHHHHHHHhhhh--cCCCCC---CCCCH---HHHHHHHHHHHHH
Confidence 34555554444333222 2 244443433 3579999999876622 223443 12333 6777788888888
Q ss_pred cCC--CCCCCcceeecCCcHHHHHHHHHHhccC--CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC
Q 016668 161 FNL--DENKWGVNVQPLSGSPANFEVYTAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG 236 (385)
Q Consensus 161 fg~--~~~~~~~~V~~~sGs~A~~~a~~all~p--GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 236 (385)
+|+ +.+ ..+.+++|++|+..++.++++| ||+|++.+|.|.++.. .+...|..+..++ +++++
T Consensus 76 ~g~~~~~~---~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~~--~~~~~- 141 (376)
T 3ezs_A 76 FKIELKEN---ELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEG--------AAKFIKAKSLLMP--LTKEN- 141 (376)
T ss_dssp HSCCCCGG---GEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHH--------HHHHTTCEEEEEE--CCGGG-
T ss_pred hCCCCCHH---HEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHH--------HHHHcCCEEEEcc--cCCCC-
Confidence 898 432 2355566778999999999999 9999999887654321 2345666555554 44322
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---------
Q 016668 237 LVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF--------- 302 (385)
Q Consensus 237 ~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~--------- 302 (385)
.+++ ++++.+.. ++++|++..++|| ...+ +++|+++|+++|++||+|++|. ++...+.....+
T Consensus 142 ~~~~-~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (376)
T 3ezs_A 142 DFTP-SLNEKELQ-EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYS-EIYENTPPPSLLEACMLAGNE 218 (376)
T ss_dssp TSCC-CCCHHHHH-HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBSSSCCCCHHHHHHHTTCT
T ss_pred Ccch-hHHhhhcc-CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccch-hhccCCCCCCHHHcccccccc
Confidence 2343 56666654 6899988777765 4445 6778888999999999999985 444433222111
Q ss_pred C-CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 303 K-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 303 ~-gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
. +.++++.|+||++ +|.|.|++++++ ++.+.+........ .+++....++...+++
T Consensus 219 ~~~~~i~~~s~sK~~g~~G~r~G~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~ 277 (376)
T 3ezs_A 219 AFKNVLVIHSLSKRSSAPGLRSGFIAGDS------RLLEKYKAFRAYLG-YTSANAIQKASEAAWL 277 (376)
T ss_dssp TCTTEEEEEESTTTTTCGGGCCEEEEECH------HHHHHHHHHHTTTC-CCCCHHHHHHHHHHHH
T ss_pred ccCcEEEEecchhccCCccceeEEEeeCH------HHHHHHHHHHhhhc-CCCChHHHHHHHHHHh
Confidence 2 4568899999998 577889999876 67777765433222 2345555556566665
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=167.86 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=140.3
Q ss_pred ccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHH
Q 016668 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (385)
Q Consensus 106 ~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~ 185 (385)
++-.+.+...+ +++++...+.... |+ ..+...+++ +.+++++|.+. .+.+.||+.|+..++
T Consensus 10 ~l~~~~~~~~~-~~~~~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~~~~ 70 (374)
T 3uwc_A 10 YLERQFADIEP-YLNDLREFIKTAD--------FT-LGAELEKFE----KRFAALHNAPH-----AIGVGTGTDALAMSF 70 (374)
T ss_dssp CHHHHTSSCHH-HHHHHHHHHHHTC--------CS-SCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHH
T ss_pred ccccCCCCchH-HHHHHHHHHHcCC--------cc-cChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHH
Confidence 33344455555 8888876664321 11 233334444 56889999874 467889999999999
Q ss_pred HHh-ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC
Q 016668 186 TAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR 264 (385)
Q Consensus 186 ~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~ 264 (385)
.++ ++|||+|++.++.|.++.. .+...|..+..++ ++ +++.+|++++++.+++ ++++|+... .+|.
T Consensus 71 ~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~~~~-~~~~v~~~n-~~G~ 137 (374)
T 3uwc_A 71 KMLNIGAGDEVITCANTFIASVG--------AIVQAGATPVLVD--SE-NGYVIDPEKIEAAITD-KTKAIMPVH-YTGN 137 (374)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHH--------HHHHTTCEEEEEC--BC-TTSSBCGGGTGGGCCT-TEEEECCBC-GGGC
T ss_pred HHcCCCCCCEEEECCCccHHHHH--------HHHHcCCEEEEEe--cC-CCCCcCHHHHHHhCCC-CceEEEEeC-CcCC
Confidence 999 9999999999987655421 3445676554444 55 4678999999998865 678887332 2567
Q ss_pred CCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCC--ccCcc-ccEEEEEEeCCCCchhHHHHHH
Q 016668 265 DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTH--KSLRG-PRGGMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 265 ~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~h--K~l~G-prgG~I~~~~~~~~~~~~~~~i 340 (385)
..|+++|.++|+++|+++++|++|+.|....+. +.. .+|++++|+| |+|.+ +.||+++++++ ++.+++
T Consensus 138 ~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~---~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~-----~~~~~~ 209 (374)
T 3uwc_A 138 IADMPALAKIAKKHNLHIVEDACQTILGRINDK---FVGSWGQFACFSLHPLKNLNVWSDAGVIITHSD-----EYAEKL 209 (374)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECSSSSSSCCSSCCEEEEESCH-----HHHHHH
T ss_pred cCCHHHHHHHHHHcCCEEEEeCCCccCceeCCe---eccccccEEEEeCCCCCcCCccceeEEEEeCCH-----HHHHHH
Confidence 789999999999999999999999876543321 222 4699999988 99977 56899988875 566655
Q ss_pred hh
Q 016668 341 NN 342 (385)
Q Consensus 341 ~~ 342 (385)
..
T Consensus 210 ~~ 211 (374)
T 3uwc_A 210 RL 211 (374)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-18 Score=169.11 Aligned_cols=170 Identities=21% Similarity=0.199 Sum_probs=126.4
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
|++..+++++ ++++++|.+. .+.+++|++|+..++.++++|||+|+++++.|+++..... ..+...|
T Consensus 60 ~~~~~~~l~~----~ia~~~g~~~-----~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~g 126 (404)
T 1e5e_A 60 GNPTVSNLEG----KIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE----HALTKFG 126 (404)
T ss_dssp CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTT
T ss_pred cChHHHHHHH----HHHHHhCCCc-----EEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH----HHHHHcC
Confidence 6665555554 6788889863 4678899999999999999999999999988765432000 0134556
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHH-cCcEEEEeccccccccccCcc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADA-VGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~-~ga~livD~ah~~Gli~~g~~ 298 (385)
..+..++ .+ |++++++.+++ ++|+|+++.++|| ...|+++|.++|++ +|+++++|++|..+..
T Consensus 127 ~~~~~v~--~~------d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~----- 192 (404)
T 1e5e_A 127 IQVDFIN--TA------IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMI----- 192 (404)
T ss_dssp CEEEEEC--TT------STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTT-----
T ss_pred CEEEEEC--CC------CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhh-----
Confidence 6544433 32 78899998865 7899999877765 67899999999999 9999999999965432
Q ss_pred cCCCC-CCcEEEECCCccCccc--c-EEEEEEeCCCCchhHHHH-HHhhcc
Q 016668 299 ADPFK-YCDVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELES-AINNAV 344 (385)
Q Consensus 299 ~~p~~-gaDiv~~S~hK~l~Gp--r-gG~I~~~~~~~~~~~~~~-~i~~~~ 344 (385)
..|++ ++|+++.|+||+|.|| | +|++++++ ++.+ ++....
T Consensus 193 ~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~------~~~~~~l~~~~ 237 (404)
T 1e5e_A 193 TNPVDFGVDVVVHSATKYINGHTDVVAGLICGKA------DLLQQIRMVGI 237 (404)
T ss_dssp CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH------HHHHHHHHTCC
T ss_pred CCccccCCEEEEEcCccccCCCCCCeEEEEEECH------HHHHHHHHHHH
Confidence 13444 7899999999998665 5 49999987 4555 676543
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=163.05 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=153.8
Q ss_pred ccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 104 SLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 104 ~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
-+++...++ .+++.|++++...+.+. ..+|+. . |. ++++..++++.+.+|.+.. ....+.+++|++|+
T Consensus 25 ~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~-~---~~----~lr~~la~~~~~~~~~~~~-~~~i~~t~g~~~a~ 94 (377)
T 3fdb_A 25 VLPLWVAESDFSTCPAVLQAITDAVQRE-AFGYQP-D---GS----LLSQATAEFYADRYGYQAR-PEWIFPIPDVVRGL 94 (377)
T ss_dssp SEECCSSCCCSCCCHHHHHHHHHHHHTT-CCSSCC-S---SC----CHHHHHHHHHHHHHCCCCC-GGGEEEESCHHHHH
T ss_pred eeeecccCCCCCCCHHHHHHHHHHHHcC-CCCCCC-C---CH----HHHHHHHHHHHHHhCCCCC-HHHEEEeCChHHHH
Confidence 355554444 35899999998877642 234543 1 22 5676677777777775421 11234455667799
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.++++|||+|++.++.|.++.. .+...|..+..++ ++++ +|++++++.+++ ++++|++..++
T Consensus 95 ~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~--~~~~---~d~~~l~~~l~~-~~~~v~i~~p~ 160 (377)
T 3fdb_A 95 YIAIDHFTPAQSKVIVPTPAYPPFFH--------LLSATQREGIFID--ATGG---INLHDVEKGFQA-GARSILLCNPY 160 (377)
T ss_dssp HHHHHHHSCTTCCEEEEESCCTHHHH--------HHHHHTCCEEEEE--CTTS---CCHHHHHHHHHT-TCCEEEEESSB
T ss_pred HHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCCEEEEcc--CCCC---CCHHHHHHHhcc-CCCEEEEeCCC
Confidence 99999999999999999887655421 2345566555444 5432 999999999976 68888887777
Q ss_pred CC--CCC---CHHHHHHHHHHcCcEEEEeccccccccccC-cccCCCC-----CCcEEEECCCccC--ccccEEEEEEeC
Q 016668 262 YP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAAS-VVADPFK-----YCDVVTTTTHKSL--RGPRGGMIFFKK 328 (385)
Q Consensus 262 ~~--~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g-~~~~p~~-----gaDiv~~S~hK~l--~GprgG~I~~~~ 328 (385)
+| ... ++++|+++|+++|+++|+|++|. ++...+ ..+.++. +.++++.|+||++ +|.+.|+++..+
T Consensus 161 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 239 (377)
T 3fdb_A 161 NPLGMVFAPEWLNELCDLAHRYDARVLVDEIHA-PLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSN 239 (377)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-hhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCC
Confidence 65 344 47788888999999999999985 444444 2222232 2237899999998 667889877754
Q ss_pred CCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 329 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
+ ++.+.+..... ....+++....++...++++
T Consensus 240 ~-----~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~ 271 (377)
T 3fdb_A 240 P-----SDAEHWQQLSP-VIKDGASTLGLIAAEAAYRY 271 (377)
T ss_dssp H-----HHHHHHHHSCH-HHHCCCCHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHH-hhcCCCCHHHHHHHHHHHhc
Confidence 3 67777765322 22234566666666666664
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-17 Score=159.16 Aligned_cols=231 Identities=15% Similarity=0.130 Sum_probs=155.7
Q ss_pred cccccCCCC--CcHHHHHHHhhHhhcc--CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HH
Q 016668 105 LELIASENF--TSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SP 179 (385)
Q Consensus 105 l~Liasen~--~s~~V~~al~s~l~~~--y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~ 179 (385)
++|...++. +++.+.+++...+.+. ...+|+.. .+ .++++...+++.+.+|...+ . .+|.+++| ++
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~---~~----~~l~~~la~~l~~~~g~~~~-~-~~v~~~~G~~~ 103 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPER---DA----VELRDELAAYITKQTGVAVT-R-DNLWAANGSNE 103 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCT---TC----HHHHHHHHHHHHHHHCCCCC-G-GGEEEESHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCc---cH----HHHHHHHHHhhhhcccCCCC-h-HhEEECCChHH
Confidence 666655543 5789999988776542 11234321 12 36777777777777765421 1 14555565 56
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
|+..++.++++|||+|++.++.|.++.. .+...|..+..++ .+ +++.+|++++++.+++.++|+|++..
T Consensus 104 al~~~~~~l~~~gd~Vl~~~~~y~~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~v~~~~ 172 (369)
T 3cq5_A 104 ILQQLLQAFGGPGRTALGFQPSYSMHPI--------LAKGTHTEFIAVS--RG-ADFRIDMDVALEEIRAKQPDIVFVTT 172 (369)
T ss_dssp HHHHHHHHHCSTTCEEEEEESSCTHHHH--------HHHHTTCEEEEEE--CC-TTSSCCHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCEEEEec--CC-cCCCCCHHHHHHHhhccCCCEEEEeC
Confidence 8889999999999999999987755421 2345666555444 44 34579999999998654789998877
Q ss_pred CCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--C-CcEEEECCCccC--ccccEEEEEEeCCCCc
Q 016668 260 SAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--Y-CDVVTTTTHKSL--RGPRGGMIFFKKDPVL 332 (385)
Q Consensus 260 s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--g-aDiv~~S~hK~l--~GprgG~I~~~~~~~~ 332 (385)
+++| ...|.+++.++|+.+++++++|++|..+. ........++ + .+++++|+||++ +|.|.|++++++
T Consensus 173 ~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~---- 247 (369)
T 3cq5_A 173 PNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFS-PSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP---- 247 (369)
T ss_dssp SCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGC-CSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT----
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhc-CCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCH----
Confidence 6654 67899999999999999999999986432 2111111112 3 458899999998 567889999987
Q ss_pred hhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 333 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+.+.....+. +++....++...+++
T Consensus 248 --~~~~~l~~~~~~~---~~~~~~~~a~~~~l~ 275 (369)
T 3cq5_A 248 --AFIDAVMLVRLPY---HLSALSQAAAIVALR 275 (369)
T ss_dssp --HHHHHHHTTSCTT---CSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCCC---CCCHHHHHHHHHHhc
Confidence 6777776554332 355555555555665
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-18 Score=166.66 Aligned_cols=193 Identities=13% Similarity=0.097 Sum_probs=133.4
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 188 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al- 188 (385)
+...+++.|++++...+.+.+ .++ + +...+ +++.+++++|.+. .+.+.||+.|+..++.++
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~--~~~------~-~~~~~----l~~~la~~~~~~~-----v~~~~ggt~al~~~~~~~~ 68 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQ--LTQ------G-KRSLL----FEEALCEFLGVKH-----ALVFNSATSALLTLYRNFS 68 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSC--CSS------S-HHHHH----HHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHcCc--ccC------C-hHHHH----HHHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhc
Confidence 456789999999998875422 122 2 22333 4557889999873 366778889999999999
Q ss_pred --ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCC
Q 016668 189 --LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266 (385)
Q Consensus 189 --l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~ 266 (385)
++|||+|+++++.|.++.. .+...|..+ +.++++++ +.+|++++++.+++ ++++|++..+ +|...
T Consensus 69 ~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~--~~~~~~~~-~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~~ 135 (375)
T 2fnu_A 69 EFSADRNEIITTPISFVATAN--------MLLESGYTP--VFAGIKND-GNIDELALEKLINE-RTKAIVSVDY-AGKSV 135 (375)
T ss_dssp CCCTTSCEEEECSSSCTHHHH--------HHHHTTCEE--EECCBCTT-SSBCGGGSGGGCCT-TEEEEEEECG-GGCCC
T ss_pred ccCCCCCEEEECCCccHhHHH--------HHHHCCCEE--EEeccCCC-CCCCHHHHHhhcCc-CceEEEEeCC-cCCcc
Confidence 8999999999987655422 234556644 44556543 47999999998865 6788766655 78888
Q ss_pred CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEEC--CCccCccccEEEEEE-eCCCCchhHHHHHHhh
Q 016668 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTT--THKSLRGPRGGMIFF-KKDPVLGVELESAINN 342 (385)
Q Consensus 267 dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S--~hK~l~GprgG~I~~-~~~~~~~~~~~~~i~~ 342 (385)
|+++|.++|+++|+++++|++|+.|....+ ..+. ..|+++.| .||++ |+..|+++. +++ ++.+++..
T Consensus 136 ~l~~i~~l~~~~~~~li~D~a~~~~~~~~~---~~~~~~~~i~~~s~s~~K~~-~~g~g~~~~~~~~-----~~~~~~~~ 206 (375)
T 2fnu_A 136 EVESVQKLCKKHSLSFLSDSSHALGSEYQN---KKVGGFALASVFSFHAIKPI-TTAEGGAVVTNDS-----ELHEKMKL 206 (375)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTCTTCEETT---EETTSSSSEEEEECCTTSSS-CCSSCEEEEESCH-----HHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEEECccccCCeECC---eeccccCCeEEEeCCCCCCc-cccCceEEEeCCH-----HHHHHHHH
Confidence 999999999999999999999976644322 1122 23665554 55998 442255555 443 56666654
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=164.73 Aligned_cols=240 Identities=17% Similarity=0.124 Sum_probs=157.2
Q ss_pred hccccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHH
Q 016668 103 KSLELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (385)
Q Consensus 103 ~~l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A 180 (385)
.-++|..+++ .+++.|++++...+.+....+|+.. .|.+ ++++.+++++.+.+|.+.+ ....+.+.+|++|
T Consensus 45 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g~~---~lr~~la~~~~~~~g~~~~-~~~i~~t~g~t~a 117 (437)
T 3g0t_A 45 KFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNL---DGLP---ELKQEASRFAKLFVNIDIP-ARACVPTVGSMQG 117 (437)
T ss_dssp CCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCT---TCCH---HHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHH
T ss_pred CEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCC---CChH---HHHHHHHHHHHHhhCCCCC-cccEEEeCCHHHH
Confidence 3455654444 3589999999888764332345442 2333 6777777778777776531 1123444455679
Q ss_pred HHHHHHHhc--cCCC--EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEE
Q 016668 181 NFEVYTAIL--KPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256 (385)
Q Consensus 181 ~~~a~~all--~pGD--~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi 256 (385)
+..++.+++ +||| +|++.++.|.++.. .+...|..+..++ ++++++.+|+++|++.++..++|+|+
T Consensus 118 l~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~--------~~~~~g~~~~~v~--~~~~~~~~d~~~l~~~l~~~~~~~v~ 187 (437)
T 3g0t_A 118 CFVSFLVANRTHKNREYGTLFIDPGFNLNKL--------QCRILGQKFESFD--LFEYRGEKLREKLESYLQTGQFCSII 187 (437)
T ss_dssp HHHHHHHHTTSCTTCSCCEEEEESCCHHHHH--------HHHHHTCCCEEEE--GGGGCTTHHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHhcCCCCCccEEEEeCCCcHhHHH--------HHHHcCCEEEEEe--ecCCCCccCHHHHHHHHhcCCceEEE
Confidence 999999998 9999 99999886654321 2345566555555 44445679999999999545789998
Q ss_pred EcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccC--------CC---CCCcEEEECCCccC--cc
Q 016668 257 AGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD--------PF---KYCDVVTTTTHKSL--RG 318 (385)
Q Consensus 257 ~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--------p~---~gaDiv~~S~hK~l--~G 318 (385)
+..+++| ...+ +++|+++|+++|++||+|++|. ++...+..+. .+ .+.+++++|+||++ +|
T Consensus 188 l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 266 (437)
T 3g0t_A 188 YSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYF-GMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAG 266 (437)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGG
T ss_pred EeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchh-hcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCcc
Confidence 8777765 4454 7788999999999999999985 3333322111 11 13458899999996 67
Q ss_pred ccEEEEEEeCCCCchhHHHH-H-----------------HhhccCCCccCCChHHHHHHHHHHHHHh
Q 016668 319 PRGGMIFFKKDPVLGVELES-A-----------------INNAVFPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 319 prgG~I~~~~~~~~~~~~~~-~-----------------i~~~~fp~~qg~p~~~~iaala~Al~e~ 367 (385)
.|.|++++++ ++.+ . +...... ...+++....++...+++..
T Consensus 267 ~r~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~ 326 (437)
T 3g0t_A 267 QRIGVLMISG------KLYEREYPDLEESFGRLRFGEALSSSALYA-LSSGATHSAQWGMAAMLKAC 326 (437)
T ss_dssp GCCEEEEECH------HHHHCBCGGGHHHHSCSBHHHHHHTTHHHH-HHSSSCHHHHHHHHHHHHHH
T ss_pred ceeEEEEECH------HHhhhhhhcccccccccchhHHHHHHHHhh-hcCCCCHHHHHHHHHHHhCc
Confidence 7889999987 5655 4 4332211 12245555666666677654
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-18 Score=168.53 Aligned_cols=184 Identities=18% Similarity=0.142 Sum_probs=129.1
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
.++++++++|.+. .+.++||++|+..++.++++|||+|++.++.|+++.... .......|..+..++ .
T Consensus 69 l~~~la~~~g~~~-----~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~----~~~~~~~g~~~~~v~--~- 136 (398)
T 2rfv_A 69 LEKKLAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL----SHSMPKFGINVRFVD--A- 136 (398)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHH----HTHHHHTTCEEEEEC--T-
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHH----HHHHHHcCCEEEEeC--C-
Confidence 4557889999873 477889999999999999999999999998776542200 001134565444333 3
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEE
Q 016668 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT 309 (385)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~ 309 (385)
.|++++++.+++ ++++|+++.+++| ...|+++|.++|+++|+++++|++|..+.. ..++. ++|+++
T Consensus 137 -----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~-----~~~~~~~~di~~ 205 (398)
T 2rfv_A 137 -----AKPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC-----QQPLQLGADIVV 205 (398)
T ss_dssp -----TSHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----CCGGGGTCSEEE
T ss_pred -----CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-----CCchhhCCcEEE
Confidence 289999999865 7899988877664 678999999999999999999999976543 12344 789999
Q ss_pred ECCCccCccc--c-EEEEEEeCCCCchhHHHH-HHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 310 TTTHKSLRGP--R-GGMIFFKKDPVLGVELES-AINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 310 ~S~hK~l~Gp--r-gG~I~~~~~~~~~~~~~~-~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
.|+||+|.|| + ||++++++ ++.+ .+.......-.++++....++...+++
T Consensus 206 ~s~sK~~~~~g~~~~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (398)
T 2rfv_A 206 HSVTKYINGHGDVIGGIIVGKQ------EFIDQARFVGLKDITGGCMSPFNAWLTLRGVK 259 (398)
T ss_dssp EETTTTTTCSSCCCCEEEEECH------HHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred EeCcccccCCCCceEEEEEECH------HHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhh
Confidence 9999998765 3 49999887 4443 444322111012444445555555554
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-18 Score=170.28 Aligned_cols=168 Identities=20% Similarity=0.165 Sum_probs=127.3
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+++| +++++++|.+. .+.++||++|+..++.++++|||+|++.++.|++.... +. ..+...|
T Consensus 112 ~~~~~~~l~----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~--~~--~~~~~~G 178 (445)
T 1qgn_A 112 GNPTTVVLE----EKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIF--IE--TILPKMG 178 (445)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHH--HH--HTGGGGT
T ss_pred CChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHH--HH--HHHHHcC
Confidence 556555555 46888999863 57789999999999999999999999999877654210 00 0123456
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCC-cEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRP-KLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~p-klIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~ 298 (385)
..+..++ . .|++++++.+++ ++ |+|+++.++|| ...|+++|.++|+++|+++++|++|..+..
T Consensus 179 ~~v~~v~--~------~d~~~l~~ai~~-~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~----- 244 (445)
T 1qgn_A 179 ITATVID--P------ADVGALELALNQ-KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN----- 244 (445)
T ss_dssp CEEEEEC--S------SCHHHHHHHHHH-SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----
T ss_pred CEEEEeC--C------CCHHHHHHHhcc-CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-----
Confidence 5444433 3 289999999976 67 99999877765 678999999999999999999999976532
Q ss_pred cCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhh
Q 016668 299 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 299 ~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~ 342 (385)
..+++ ++|++++|+||++.|+. +|++++++ ++.+++..
T Consensus 245 ~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~------~l~~~l~~ 286 (445)
T 1qgn_A 245 QKALALGADLVLHSATKFLGGHNDVLAGCISGPL------KLVSEIRN 286 (445)
T ss_dssp CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH------HHHHHHHH
T ss_pred CCccccCCEEEEECCcccccccccceEEEEEECH------HHHHHHHH
Confidence 24556 89999999999997764 89999987 56665543
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-17 Score=161.00 Aligned_cols=223 Identities=18% Similarity=0.069 Sum_probs=143.9
Q ss_pred CcHHHHHHHhhHhhccC--CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCC-cHHHHHHHHHHhcc
Q 016668 114 TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYTAILK 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y--~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~s-Gs~A~~~a~~all~ 190 (385)
+++.+.+++...+.+.. .. |+. ..|. .++++.+.+++.+.+|.+.+ . .+|.+++ |++|+..++.++++
T Consensus 50 ~~~~v~~a~~~~~~~~~~~~~-y~~---~~~~---~~l~~~la~~~~~~~g~~~~-~-~~v~~t~g~t~a~~~~~~~~~~ 120 (407)
T 2zc0_A 50 PRAVLGEIAKEVLEKEPKSVM-YTP---ANGI---PELREELAAFLKKYDHLEVS-P-ENIVITIGGTGALDLLGRVLID 120 (407)
T ss_dssp CHHHHHHHHHHHHHHCGGGGS-CCC---TTCC---HHHHHHHHHHHHHHSCCCCC-G-GGEEEESHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhcccccc-CCC---CCCC---HHHHHHHHHHHHHhcCCCCC-c-ceEEEecCHHHHHHHHHHHhcC
Confidence 67889999887765421 11 222 1133 37887777777777794321 1 1344555 47799999999999
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhh----h-cCCcEEE-EcCCCC--
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI----L-FRPKLII-AGASAY-- 262 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~----~-~~pklIi-~~~s~~-- 262 (385)
|||+|++.+|.|.++. ..+...|..+..++ .++ ++ +|++++++.++ + .++|+|+ +..+++
T Consensus 121 ~gd~vl~~~p~~~~~~--------~~~~~~g~~~~~v~--~~~-~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~npt 188 (407)
T 2zc0_A 121 PGDVVITENPSYINTL--------LAFEQLGAKIEGVP--VDN-DG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPM 188 (407)
T ss_dssp TTCEEEEEESCCHHHH--------HHHHTTTCEEEEEE--EET-TE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTT
T ss_pred CCCEEEEeCCChHHHH--------HHHHHcCCEEEEcc--cCC-CC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCC
Confidence 9999999988665432 13345676555444 443 33 89999999886 4 2678874 555555
Q ss_pred CCCCCHH---HHHHHHHHcCcEEEEeccccccccccCcccCCC---C--CCcEEEECCCccCc-cccEEEEEEeCCCCch
Q 016668 263 PRDFDYP---RMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLG 333 (385)
Q Consensus 263 ~~~~dl~---~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~--gaDiv~~S~hK~l~-GprgG~I~~~~~~~~~ 333 (385)
|...+.+ +|.++|+++|+++|+|++|..+ ...+..+.++ + +.++++.|+||++. |.|+|++++++
T Consensus 189 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~----- 262 (407)
T 2zc0_A 189 GVTMSMERRKALLEIASKYDLLIIEDTAYNFM-RYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEG----- 262 (407)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS-BSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCH-----
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEECCCccc-ccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCH-----
Confidence 4566765 9999999999999999998543 3333211112 2 23478999999985 55889999976
Q ss_pred hHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 334 VELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 334 ~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+.+.....+...+.+ ....++...+++
T Consensus 263 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 292 (407)
T 2zc0_A 263 -EILKKVLMQKQPIDFCAP-AISQYIALEYLK 292 (407)
T ss_dssp -HHHHHHHHHHTTTTSSSC-HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcCCCC-HHHHHHHHHHHH
Confidence 677777654433333333 333444444554
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=169.28 Aligned_cols=235 Identities=16% Similarity=0.142 Sum_probs=146.6
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCC--CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGK--RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~--r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
..+.++.|++++...+.+.+ +++.. ++..|.. .....+++++++++|++.++ .+.+.+|+.++..++.++
T Consensus 37 ~~~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~~~~---~~~~~l~~~la~~~g~~~~~---v~~~~g~t~al~~al~~~ 108 (416)
T 1qz9_A 37 LGARPVAALARAQAVIAEEW--GNGLIRSWNSAGWR---DLSERLGNRLATLIGARDGE---VVVTDTTSINLFKVLSAA 108 (416)
T ss_dssp SCCCBTTHHHHHHHHHHTCC--CCCGGGHHHHTSGG---GHHHHHHHHHHTTTTCCTTS---EEECSCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHH--hccCccccchhhHH---HHHHHHHHHHHHHcCCCccc---EEEeCChhHHHHHHHHhh
Confidence 34678899999988876543 22221 1111211 22223567899999997531 233445566887788877
Q ss_pred c------cCCCEEeec-CCCCCccccCCccccccccccC--cceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 189 L------KPHDRIMGL-DLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 189 l------~pGD~Vl~~-~~~~ggh~s~~~~~~~~~~~~~--g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
+ +|||+|++. ++.|+++.. .+. ...... |..+..++ + +++|++.+++ ++++|++..
T Consensus 109 ~~~~~~~~~gd~vii~~~~~~~~~~~-~~~---~~~~~~~~g~~~~~v~--~--------~~~l~~~i~~-~~~~v~~~~ 173 (416)
T 1qz9_A 109 LRVQATRSPERRVIVTETSNFPTDLY-IAE---GLADMLQQGYTLRLVD--S--------PEELPQAIDQ-DTAVVMLTH 173 (416)
T ss_dssp HHHHHHHSTTCCEEEEETTSCHHHHH-HHH---HHHHHHCSSCEEEEES--S--------GGGHHHHCST-TEEEEEEES
T ss_pred cccccccCCCCcEEEEcCCCCCchHH-HHH---HHHHHhcCCceEEEeC--c--------HHHHHHHhCC-CceEEEEec
Confidence 6 899975444 445543211 000 001112 55444333 2 6788888864 789988877
Q ss_pred CCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccC-ccccE-EEEEEeCCCCch
Q 016668 260 SAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL-RGPRG-GMIFFKKDPVLG 333 (385)
Q Consensus 260 s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l-~Gprg-G~I~~~~~~~~~ 333 (385)
+++ |...|+++|.++|+++|+++++|++|+.|.. +.++. ++|++++|+||++ .|+++ |+++++++
T Consensus 174 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~---- 244 (416)
T 1qz9_A 174 VNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV-----PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQ---- 244 (416)
T ss_dssp BCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTT----
T ss_pred cccCcccccCHHHHHHHHHHcCCEEEEEccccccCc-----CCChhhcCCCEEEecCcccCCCCCCCeEEEEECHH----
Confidence 665 4678999999999999999999999975532 22232 6899999999997 57888 99999885
Q ss_pred hHHHHHHhhccC----------------------CCccCCChHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016668 334 VELESAINNAVF----------------------PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379 (385)
Q Consensus 334 ~~~~~~i~~~~f----------------------p~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v 379 (385)
+.+++..... ....++++...++++..+++.+..+++++..+++
T Consensus 245 --~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 310 (416)
T 1qz9_A 245 --LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKS 310 (416)
T ss_dssp --TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred --HHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3232321100 0123467778888888888877554444444433
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=174.97 Aligned_cols=248 Identities=14% Similarity=0.133 Sum_probs=151.3
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCC--CCC-----CCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLP--GKR-----YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PA 180 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p--~~r-----~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A 180 (385)
++..+.++.|.+++.......+..+.. +.. .+.+.+...++++.+++++++++|++.+ .+++.+|| .+
T Consensus 87 aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~~t~g~te~a 162 (456)
T 2z67_A 87 VRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH----AIATPISTGMS 162 (456)
T ss_dssp EECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE----EEEESSCHHHH
T ss_pred cccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC----EEEeCcHHHHH
Confidence 334456777777766533222221111 000 0112233567888899999999999862 35566677 57
Q ss_pred HHHHHHHhcc--CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHh-hh---cCCcE
Q 016668 181 NFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTA-IL---FRPKL 254 (385)
Q Consensus 181 ~~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i-~~---~~pkl 254 (385)
|..++.++.. +||.|++++++|.+.. +.+...|..+..+++....+++.+|+++|++.+ +. .++++
T Consensus 163 ~~~al~~~~~~~~~~~vi~~~~~h~s~~--------~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 234 (456)
T 2z67_A 163 ISLCLSAARKKYGSNVVIYPYASHKSPI--------KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC 234 (456)
T ss_dssp HHHHHHHHHHHHCCCEEEEECCCCHHHH--------HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcHHHH--------HHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEE
Confidence 7767776544 7888888887654321 234556776665553211245789999999998 42 36677
Q ss_pred EEEcCCC--CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCccc---CCCC-CCcEEEECCCccCcccc-EEEEEEe
Q 016668 255 IIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA---DPFK-YCDVVTTTTHKSLRGPR-GGMIFFK 327 (385)
Q Consensus 255 Ii~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~---~p~~-gaDiv~~S~hK~l~Gpr-gG~I~~~ 327 (385)
|++..++ +|...|+++|.++|+++|+++++|+||+.... |..+ ..+. ++|++++|+||++.||. +|+++++
T Consensus 235 vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~--g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~ 312 (456)
T 2z67_A 235 VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNN--YYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYST 312 (456)
T ss_dssp EEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCH--HHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEES
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHH--HhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEc
Confidence 7666654 46788999999999999999999988753221 1111 1112 68999999999977765 5999996
Q ss_pred CCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016668 328 KDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379 (385)
Q Consensus 328 ~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v 379 (385)
++ ++.+.+.. .+.+... ... +.++..++..+...++++..++.
T Consensus 313 ~~-----~~~~~l~~-~~~g~~~--~~~-~~~~~aal~~l~~~~~~~~~~~~ 355 (456)
T 2z67_A 313 DA-----EFIKEISL-SYPGRAS--ATP-VVNTLVSLLSMGSKNYLELVKNQ 355 (456)
T ss_dssp CH-----HHHHHHHT-TSCSCBC--SHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CH-----HHHhhcCc-CCCCCCC--CCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 56666633 2333221 122 33444455544434444444443
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=165.28 Aligned_cols=233 Identities=11% Similarity=0.109 Sum_probs=148.4
Q ss_pred cccCChHHHHHHHHHHHHhhh--c---cccccC-------CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHH
Q 016668 83 LGEADPEVCEIITKEKERQFK--S---LELIAS-------ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELE 150 (385)
Q Consensus 83 l~~~dp~~~~~i~~e~~~~~~--~---l~Lias-------en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le 150 (385)
.+..++.++.++++.+..... + ++|-.+ +..+++.|.+++...... ...+|+. ..|.+ +++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~~---~~g~~---~lr 86 (418)
T 3rq1_A 14 GKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDS-EHVGYAP---IAGIP---DFL 86 (418)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHH-HHHSCCC---TTCCH---HHH
T ss_pred CCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhccc-ccCCCCC---CCChH---HHH
Confidence 455666788887765554432 2 444333 455688899888654321 1123433 22444 666
Q ss_pred HHHHHHHHHHcCCCCCCCcceee-cCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEec
Q 016668 151 TLCQKRALAAFNLDENKWGVNVQ-PLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY 229 (385)
Q Consensus 151 ~~~~~~la~lfg~~~~~~~~~V~-~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~ 229 (385)
+...+++...++.+.. .+|. +.+|++|+..++.++++|||+|++++|.|.++.. .+...|..+..++
T Consensus 87 ~~ia~~~~~~~~~~~~---~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~~~~v~- 154 (418)
T 3rq1_A 87 CAAEKECFGNFRPEGH---IRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV--------ICSDTGRTLVTYS- 154 (418)
T ss_dssp HHHHHHHHGGGCCSSE---EEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH--------HHHHTTCEEEEEC-
T ss_pred HHHHHHHhcccCcccc---ccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHH--------HHHHcCCEEEEEe-
Confidence 6666666665565421 1344 4455679999999999999999999987755432 3345676544444
Q ss_pred cccCCCCCCCHHHHHHHhhhc---CCc-EEEEcCC-CCC--CCCCHH---HHHHHHH------HcCcEEEEecccccccc
Q 016668 230 RLDESTGLVDYDMLEKTAILF---RPK-LIIAGAS-AYP--RDFDYP---RMRQIAD------AVGALLMMDMAHISGLV 293 (385)
Q Consensus 230 ~~~~~~~~iD~d~le~~i~~~---~pk-lIi~~~s-~~~--~~~dl~---~I~~ia~------~~ga~livD~ah~~Gli 293 (385)
++++++.+|++++++.+++. +++ +|+++.+ +|| ...+.+ +|+++|+ ++|+++|+|++| .++.
T Consensus 155 -~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y-~~~~ 232 (418)
T 3rq1_A 155 -LFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAY-LDYS 232 (418)
T ss_dssp -SBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTT-GGGS
T ss_pred -eeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccc-cccc
Confidence 54445789999999998652 566 7777766 665 566655 5555665 899999999998 5555
Q ss_pred ccCcc-c---CCCC--CCc---EEEECCCccC--ccccEEEEEE---eCCCCchhHHHHHHhh
Q 016668 294 AASVV-A---DPFK--YCD---VVTTTTHKSL--RGPRGGMIFF---KKDPVLGVELESAINN 342 (385)
Q Consensus 294 ~~g~~-~---~p~~--gaD---iv~~S~hK~l--~GprgG~I~~---~~~~~~~~~~~~~i~~ 342 (385)
..+.. . ..+. ..| ++++|+||++ +|+|.|++++ ++ ++.+.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~------~~~~~~~~ 289 (418)
T 3rq1_A 233 GEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDE------EIADEFFE 289 (418)
T ss_dssp SCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSH------HHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCH------HHHHHHHH
Confidence 43321 1 1111 223 6789999987 6788899988 44 56665543
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-17 Score=160.75 Aligned_cols=231 Identities=19% Similarity=0.161 Sum_probs=147.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--c
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKR-YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r-~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--~ 190 (385)
.+|.|++++...+.+.. .+..+.+ .|+..+...++ ++.+++++|.+. .|.+++|+.++..++.++. +
T Consensus 61 ~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~l----~~~la~~~~~~~-----~i~~~sG~~a~~~~~~~l~~~~ 130 (401)
T 2bwn_A 61 QHPVVLAAMHEALEAVG-AGSGGTRNISGTTAYHRRL----EAEIAGLHQKEA-----ALVFSSAYNANDATLSTLRVLF 130 (401)
T ss_dssp GCHHHHHHHHHHHHHHC-SCCCSBTTTBCCBHHHHHH----HHHHHHHTTCSE-----EEEESCHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcC-CCCCCcCcccCChHHHHHH----HHHHHHHhCCCc-----EEEECCcHHHHHHHHHHHhcCC
Confidence 36789999887775422 1111111 12223433444 457888999753 5677999998888877763 6
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh---cCCcEEEEcCCCC--CCC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL---FRPKLIIAGASAY--PRD 265 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~---~~pklIi~~~s~~--~~~ 265 (385)
|||+|++.++.|+++.. .+...|..+..++ .+ |++++++.++. .++++|++..+++ |..
T Consensus 131 ~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~ 194 (401)
T 2bwn_A 131 PGLIIYSDSLNHASMIE--------GIKRNAGPKRIFR--HN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDF 194 (401)
T ss_dssp TTCEEEEETTCCHHHHH--------HHHHSCCCEEEEC--TT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCB
T ss_pred CCCEEEECchhhHHHHH--------HHHHcCCeEEEEc--CC------CHHHHHHHHHhhccCCceEEEEecCcCCCCCc
Confidence 99999999887654421 2345566544444 32 78999988863 3678988877665 467
Q ss_pred CCHHHHHHHHHHcCcEEEEeccccccccc-cCc-ccC--CC-CCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHH
Q 016668 266 FDYPRMRQIADAVGALLMMDMAHISGLVA-ASV-VAD--PF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI 340 (385)
Q Consensus 266 ~dl~~I~~ia~~~ga~livD~ah~~Gli~-~g~-~~~--p~-~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i 340 (385)
.|+++|.++|+++|+++++|++|+.|... .|. ... .+ +..|++++|++|+|.+ .||++++++ ++.+.+
T Consensus 195 ~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~GG~~~~~~------~~~~~l 267 (401)
T 2bwn_A 195 GPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASA------RMVDAV 267 (401)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECH------HHHHHH
T ss_pred CCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-CCCEEecCH------HHHHHH
Confidence 89999999999999999999999866532 111 000 11 1357899999999854 568888876 566655
Q ss_pred hhcc--CCCccCCChHHHHHHHHHHHHHhhCchHHHHHHH
Q 016668 341 NNAV--FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378 (385)
Q Consensus 341 ~~~~--fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~ 378 (385)
.... +....+.+ +..++++..+++.+...++.+..++
T Consensus 268 ~~~~~~~~~~~~~~-~~~~~a~~~al~~~~~~~~~~~~~~ 306 (401)
T 2bwn_A 268 RSYAPGFIFSTSLP-PAIAAGAQASIAFLKTAEGQKLRDA 306 (401)
T ss_dssp HHHCHHHHTSBCCC-HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHhCcCceecCCCC-HHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4321 11112233 3666777778876654333333333
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=167.74 Aligned_cols=168 Identities=21% Similarity=0.241 Sum_probs=126.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|...|+ +++..+++++ ++++++|.+. .+.+.||+.|+..++.++++|||+|++.++.|++......
T Consensus 72 ~~~y~r~--~~p~~~~l~~----~la~~~g~~~-----~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~-- 138 (414)
T 3ndn_A 72 HYVYSRY--GNPTVSVFEE----RLRLIEGAPA-----AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCS-- 138 (414)
T ss_dssp CCCBTTT--CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHH--
T ss_pred CcCcCCC--CChHHHHHHH----HHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHH--
Confidence 4444443 5666666654 6888999764 4778899999999999999999999999988766432100
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
......|..+..++ .+ |++++++.+++ ++|+|+++.+++| ...|+++|+++|+++|++|++|++|..
T Consensus 139 --~~~~~~g~~~~~v~--~~------d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~ 207 (414)
T 3ndn_A 139 --EILPRWGVQTVFVD--GD------DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFAT 207 (414)
T ss_dssp --THHHHTTCEEEEEC--TT------CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTH
T ss_pred --HHHHHcCcEEEEeC--CC------CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcc
Confidence 01123566444433 32 89999999965 7899999877765 578999999999999999999999976
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcc---ccEEEEEEeCC
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRG---PRGGMIFFKKD 329 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~G---prgG~I~~~~~ 329 (385)
|.. ..++. ++|+++.|+||+|.| +++|+++++++
T Consensus 208 ~~~-----~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~ 245 (414)
T 3ndn_A 208 PLL-----QQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDRE 245 (414)
T ss_dssp HHH-----CCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH
T ss_pred ccc-----CCchhcCCCeEeccCCccccCCCCceEEEEEECHH
Confidence 532 24455 789999999999965 55899999874
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=164.10 Aligned_cols=169 Identities=22% Similarity=0.268 Sum_probs=126.2
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..++++ +++++++|.+. .+.++||++|+..++.+++++||+|++.++.|++..... .......|
T Consensus 64 ~~~~~~~l~----~~la~~~g~~~-----~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~----~~~~~~~g 130 (392)
T 3qhx_A 64 GNPTRTALE----AALAAVEDAAF-----GRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLI----DKVFTGWN 130 (392)
T ss_dssp CCHHHHHHH----HHHHHHTTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH----HHTGGGGT
T ss_pred CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHH----HHHHHhcC
Confidence 456555555 46889999874 477889999999999999999999999998876542210 01123445
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+..++ . .|++++++.+++ ++++|++..++++ ...|+++|+++|+++|+++++|++|..+.. .
T Consensus 131 ~~~~~v~--~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-----~ 196 (392)
T 3qhx_A 131 VEYTPVA--L------ADLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-----Q 196 (392)
T ss_dssp CEEEEEC--T------TCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-----C
T ss_pred cEEEEeC--C------CCHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 5444333 3 289999999965 7899998877665 678999999999999999999999865422 2
Q ss_pred CCCC-CCcEEEECCCccCccc---cEEEEEEeCCCCchhHHHHHHhh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.+++ ++|+++.|+||++.|+ ++|+++++++ ++.+.+..
T Consensus 197 ~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~-----~~~~~l~~ 238 (392)
T 3qhx_A 197 QPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDE-----ELDQSFAF 238 (392)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHH
T ss_pred ChHHhCCcEEEEcCccccCCCCCceEEEEEECcH-----HHHHHHHH
Confidence 3455 7899999999999664 5899999864 56666544
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=163.42 Aligned_cols=196 Identities=20% Similarity=0.203 Sum_probs=130.1
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
++++.+++++....... . .|...+...+++ +++++++|.+. .+.++||++|+..++.++++||
T Consensus 15 ~p~~~~~~a~~~~~~~~-------~-~y~~~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~~~~~~~~~~g 77 (347)
T 1jg8_A 15 KPTEEMRKAMAQAEVGD-------D-VYGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGNQVSIMAHTQRG 77 (347)
T ss_dssp CCCHHHHHHHHTCCCCC-------G-GGTCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHhcCCCCC-------c-ccCCChHHHHHH----HHHHHHhCCce-----EEEecCcHHHHHHHHHHhcCCC
Confidence 46788888886432111 1 122334344554 57888999864 4678899999999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCCC---CC
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASAY---PR 264 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklIi~~~s~~---~~ 264 (385)
|+|+++++.|.+..... ..+...|..+. ++ .+ +++.+|++++++.+++. ++|+|+++.+++ |.
T Consensus 78 d~Vl~~~~~~~~~~~~~-----~~~~~~g~~~~--~v-~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~ 148 (347)
T 1jg8_A 78 DEVILEADSHIFWYEVG-----AMAVLSGVMPH--PV-PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR 148 (347)
T ss_dssp CEEEEETTCHHHHSSTT-----HHHHHTCCEEE--EE-CE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred CEEEEcCcchhhhcccc-----chhhccCeEEE--Ee-cC-CCCccCHHHHHHHhccccccccCceEEEEeccccccCCc
Confidence 99999988654321100 01234565443 33 22 35678999999998642 578998877765 44
Q ss_pred CCC---HHHHHHHHHHcCcEEEEeccccccc-cccCcccCCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHH
Q 016668 265 DFD---YPRMRQIADAVGALLMMDMAHISGL-VAASVVADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESA 339 (385)
Q Consensus 265 ~~d---l~~I~~ia~~~ga~livD~ah~~Gl-i~~g~~~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~ 339 (385)
..+ +++|.++|+++|+++++|++|..+. ...+..+.++. ++|.+++|+||++.+|.|++++.++ ++.++
T Consensus 149 ~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~------~~~~~ 222 (347)
T 1jg8_A 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR------DFIER 222 (347)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH------HHHHH
T ss_pred cCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCH------HHHHH
Confidence 444 5789999999999999999985432 11222112222 6788888999999888776676665 45555
Q ss_pred H
Q 016668 340 I 340 (385)
Q Consensus 340 i 340 (385)
+
T Consensus 223 ~ 223 (347)
T 1jg8_A 223 A 223 (347)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=157.42 Aligned_cols=187 Identities=18% Similarity=0.180 Sum_probs=133.9
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI- 188 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al- 188 (385)
.....++.+++++...+...+ |+ ..+..+++| +.+++++|.+. .+.++|||.|+..++.++
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~a~~~al~~~~ 70 (390)
T 3b8x_A 9 ASSTWDDLEYKAIQSVLDSKM--------FT-MGEYVKQYE----TQFAKTFGSKY-----AVMVSSGSTANLLMIAALF 70 (390)
T ss_dssp CCCCCCHHHHHHHHHHHHHTC--------CS-SCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHcCC--------CC-CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHH
Confidence 556678999999887775421 11 223344444 56888999874 578899999999999998
Q ss_pred ------ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 016668 189 ------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (385)
Q Consensus 189 ------l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 262 (385)
++|||+|+++.++|.++.. .+...|..+ +.++++++++.+|+++|++.+++ ++++|++.. ..
T Consensus 71 ~~~~~~~~~g~~Vi~~~~~~~~~~~--------~~~~~g~~~--~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~ 138 (390)
T 3b8x_A 71 FTKKPRLKKGDEIIVPAVSWSTTYY--------PLQQYGLRV--KFVDIDINTLNIDIESLKEAVTD-STKAILTVN-LL 138 (390)
T ss_dssp SSSSCSCCTTCEEEEESSSCHHHHH--------HHHHTTCEE--EEECBCTTTCSBCHHHHHHHCCT-TEEEEEEEC-GG
T ss_pred hhhhcCCCCcCEEEECCCCcHHHHH--------HHHHcCCEE--EEEecCccccCcCHHHHHHHhCc-CCeEEEEEC-Cc
Confidence 8999999999987655422 234566644 44456655688999999999865 688887753 23
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECC--CccCccccEEEEEEeCC
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTT--HKSLRGPRGGMIFFKKD 329 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~--hK~l~GprgG~I~~~~~ 329 (385)
+...|+++|.++|+++|+++++|++|+.|....+. .+. ..|+.++|+ +|.+.++.||+++++++
T Consensus 139 g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~ 205 (390)
T 3b8x_A 139 GNPNNFDEINKIIGGRDIILLEDNCESMGATFNNK---CAGTFGLMGTFSSFYSNHIATMEGGCIVTDDE 205 (390)
T ss_dssp GCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCSSSCEEEEESCH
T ss_pred cChhhHHHHHHHHHHcCCEEEEECcCcccCEECCc---ccccccceEEEEccCCCCCccCCceEEEeCCH
Confidence 45589999999999999999999999877654221 121 236655443 34476678899999874
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=162.57 Aligned_cols=231 Identities=17% Similarity=0.133 Sum_probs=145.6
Q ss_pred CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHc------C--CCCCCCcceeecCCcHHHHH
Q 016668 111 ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF------N--LDENKWGVNVQPLSGSPANF 182 (385)
Q Consensus 111 en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lf------g--~~~~~~~~~V~~~sGs~A~~ 182 (385)
+..+++.|++++...+......+|+. ..|.. ++++...+++.+.| | ++.+ ..+.+++|++|+.
T Consensus 48 ~~~~~~~v~~a~~~~~~~~~~~~y~~---~~~~~---~lr~~la~~~~~~~~~~~~~~~~~~~~---~v~~~~g~~~al~ 118 (416)
T 1bw0_A 48 NLLTSAAQIKKLKEAIDSQECNGYFP---TVGSP---EAREAVATWWRNSFVHKEELKSTIVKD---NVVLCSGGSHGIL 118 (416)
T ss_dssp CSCCCHHHHHHHHHHHHTTCSSSCCC---TTCCH---HHHHHHHHHHHHHHCCSTTTGGGCCGG---GEEEESHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhCCccCCcCC---CCCCH---HHHHHHHHHHHhhhcccccCCCCCCcc---eEEEeCChHHHHH
Confidence 35668999999988775432234432 12333 66665555555322 2 3332 1244445567999
Q ss_pred HHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
.++.++++|||+|++.+|.|.++.. .+...|..+..++ ++++ ++.+|+++|++.+++ ++++|++..++
T Consensus 119 ~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~ 187 (416)
T 1bw0_A 119 MAITAICDAGDYALVPQPGFPHYET--------VCKAYGIGMHFYN--CRPENDWEADLDEIRRLKDD-KTKLLIVTNPS 187 (416)
T ss_dssp HHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTCEEEEEE--EEGGGTTEECHHHHHHHCCT-TEEEEEEESSC
T ss_pred HHHHHhCCCCCEEEEcCCCcHhHHH--------HHHHcCcEEEEee--cCcccCCCCCHHHHHHHhcc-CCeEEEEeCCC
Confidence 9999999999999999987755421 2345676555444 4433 356899999999864 67888776666
Q ss_pred CC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCc----ccCCC---C-C-CcEEEECCCccC--ccccEEEEE
Q 016668 262 YP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV----VADPF---K-Y-CDVVTTTTHKSL--RGPRGGMIF 325 (385)
Q Consensus 262 ~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~----~~~p~---~-g-aDiv~~S~hK~l--~GprgG~I~ 325 (385)
+| ...+ +++|.++|+++|++||+|++|.. +...+. ...++ + . .++++.|+||++ +|.|.|+++
T Consensus 188 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~ 266 (416)
T 1bw0_A 188 NPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAG-MVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLL 266 (416)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT-CBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEE
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEE
Confidence 65 5666 89999999999999999999854 444432 11122 2 1 236789999996 677889999
Q ss_pred EeCC-CCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 326 FKKD-PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 326 ~~~~-~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++++ .. +..+...+..... ...+++....+++..+|+
T Consensus 267 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~ 304 (416)
T 1bw0_A 267 YVDPHGN-GPSFLEGLKRVGM--LVCGPCTVVQAALGEALL 304 (416)
T ss_dssp EECTTCS-CHHHHHHHHHHHH--HHTCSCHHHHHHHHHHHH
T ss_pred eeCchhh-HHHHHHHHHHHhc--cccCCCcHHHHHHHHHHh
Confidence 8773 11 1123322222110 112455566666666775
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=166.14 Aligned_cols=169 Identities=20% Similarity=0.250 Sum_probs=125.9
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..+++|+ .+++++|.+. .|.++||++|+..++. +++|||+|++.++.|+++... + ...+...|
T Consensus 65 ~~p~~~~l~~----~la~~~g~~~-----~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~-~---~~~~~~~G 130 (403)
T 3cog_A 65 GNPTRNCLEK----AVAALDGAKY-----CLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRY-F---RQVASEFG 130 (403)
T ss_dssp -CHHHHHHHH----HHHHHHTCSE-----EEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHH-H---HHTGGGGT
T ss_pred CCchHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHH-H---HHHHHHcC
Confidence 4565556665 6788899873 5778999999999998 999999999999988664220 0 00123456
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcC-cEEEEeccccccccccCcc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~g-a~livD~ah~~Gli~~g~~ 298 (385)
..+..++ .+ |++++++.+++ ++|+|+++.+++| ...|+++|.++|+++| +++++|++|..+..
T Consensus 131 ~~v~~v~--~~------d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~----- 196 (403)
T 3cog_A 131 LKISFVD--CS------KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF----- 196 (403)
T ss_dssp CEEEEEC--TT------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTT-----
T ss_pred CEEEEEC--CC------CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccccc-----
Confidence 5444333 32 89999999865 7899998877765 6789999999999999 99999999865532
Q ss_pred cCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhhc
Q 016668 299 ADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 299 ~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
..|++ ++|+++.|+||+|.||. +|+++++++ ++.+++...
T Consensus 197 ~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~-----~l~~~l~~~ 240 (403)
T 3cog_A 197 QRPLALGADISMYSATKYMNGHSDVVMGLVSVNCE-----SLHNRLRFL 240 (403)
T ss_dssp CCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCH-----HHHHHHHHH
T ss_pred CCccccCCeEEEEcChhhccCCCCCeEEEEEECcH-----HHHHHHHHH
Confidence 24555 78999999999998874 599998754 666666543
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-18 Score=176.74 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=134.6
Q ss_pred HHHHHHHHHHcCCCCCCCcceeecCC-cHHHHHHHHHHhccCCCE---EeecCCCCCccccCCccccccccccCcceEEE
Q 016668 151 TLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYTAILKPHDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (385)
Q Consensus 151 ~~~~~~la~lfg~~~~~~~~~V~~~s-Gs~A~~~a~~all~pGD~---Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (385)
+.+++++++++|++.+ +|.+++ ++.++..++.++++|||. |++.++.|.+... .+. ..+...|..+..
T Consensus 114 ~~l~~~la~~~g~~~~----~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~-~~~---~~~~~~G~~~~~ 185 (465)
T 3e9k_A 114 ESIVGLMKDIVGANEK----EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHY-AIE---SQLQLHGLNIEE 185 (465)
T ss_dssp HHHHGGGHHHHTCCGG----GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHH-HHH---HHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCCcC----CEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHH-HHH---HHHHHcCCccee
Confidence 3456789999999864 344454 556888899999887665 9999987754211 110 012334443210
Q ss_pred --Ee-ccccCCCCCCCHHHHHHHhhh--cCCcEEEEcCCCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 227 --MP-YRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 227 --i~-~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
+. .+.+ +++.+|++++++.+++ .++++|+++.++| |...|+++|.++|+++|+++++|++|+.|.. +
T Consensus 186 ~~v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~-----~ 259 (465)
T 3e9k_A 186 SMRMIKPRE-GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNV-----E 259 (465)
T ss_dssp HEEEECCCT-TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----C
T ss_pred eeEEEecCC-CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCc-----C
Confidence 11 1122 4578999999999963 3678888877665 4678999999999999999999999987643 2
Q ss_pred CCCC--CCcEEEECCCccC-ccccE-EEEEEeCCCCchhHHHHHHhhc--------------c---CC-------CccCC
Q 016668 300 DPFK--YCDVVTTTTHKSL-RGPRG-GMIFFKKDPVLGVELESAINNA--------------V---FP-------GLQGG 351 (385)
Q Consensus 300 ~p~~--gaDiv~~S~hK~l-~Gprg-G~I~~~~~~~~~~~~~~~i~~~--------------~---fp-------~~qg~ 351 (385)
..+. ++|++++|+||++ .||.| |+++.+++ +.+.+... . +. ...|+
T Consensus 260 ~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt 333 (465)
T 3e9k_A 260 LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEK------HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISN 333 (465)
T ss_dssp CCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGG------GTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSC
T ss_pred CchhhcCCCEEEECcccccccCCCceEEEEEcHH------HHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCC
Confidence 2232 7899999999999 48876 88888774 22211100 0 00 11347
Q ss_pred ChHHHHHHHHHHHHHhhC
Q 016668 352 PHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 352 p~~~~iaala~Al~e~~~ 369 (385)
|+...++++..+++.+..
T Consensus 334 ~~~~~~~a~~aal~~~~~ 351 (465)
T 3e9k_A 334 PPILLVCSLHASLEIFKQ 351 (465)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 888889999988876544
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=158.26 Aligned_cols=165 Identities=14% Similarity=0.142 Sum_probs=123.7
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccc-cccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~-~~~~g~~~~~i~~~~ 231 (385)
.++++++++|.+. .+.++||++|+..++.++++|||+|+++++.|.++.... .. ....|..+..++ .
T Consensus 3 l~~~la~~~g~~~-----~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~--~ 70 (331)
T 1pff_A 3 LEGKIAKLEHAEA-----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALF-----EHQLRKFGVEVDFID--M 70 (331)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHH-----HTHHHHTTCEEEEEC--T
T ss_pred HHHHHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHH-----HHHHHhcCCEEEEeC--C
Confidence 3457889999873 577899999999999999999999999998776542210 00 123565444333 2
Q ss_pred cCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CCCCCHHHHHHHHHH-cCcEEEEeccccccccccCcccCCCC-CCcE
Q 016668 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADA-VGALLMMDMAHISGLVAASVVADPFK-YCDV 307 (385)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~~~~dl~~I~~ia~~-~ga~livD~ah~~Gli~~g~~~~p~~-gaDi 307 (385)
+|++++++.+++ ++++|++..+++ |...|+++|.++|++ +|+++++|++|..|... .+++ +.|+
T Consensus 71 ------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~~d~ 138 (331)
T 1pff_A 71 ------AVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT-----NPLDLGVDI 138 (331)
T ss_dssp ------TSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC-----CGGGGTCSE
T ss_pred ------CCHHHHHHhhcC-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccC-----ChhhcCCcE
Confidence 478899998864 689998877765 467899999999999 99999999999766432 2334 7899
Q ss_pred EEECCCccCccc--c-EEEEEEeCCCCchhHHHHHHhhccCC
Q 016668 308 VTTTTHKSLRGP--R-GGMIFFKKDPVLGVELESAINNAVFP 346 (385)
Q Consensus 308 v~~S~hK~l~Gp--r-gG~I~~~~~~~~~~~~~~~i~~~~fp 346 (385)
+++|+||+|.|| | +|+++++++ ++.+++......
T Consensus 139 ~~~s~~K~~~~~~~r~~G~~~~~~~-----~~~~~l~~~~~~ 175 (331)
T 1pff_A 139 VVHSATKYINGHTDVVAGLVCSRAD-----IIAKVKSQGIKD 175 (331)
T ss_dssp EEEETTTTTSSSSSCCCEEEEECHH-----HHHHHHHTCCCC
T ss_pred EEEECccccCCCCCceEEEEEeCcH-----HHHHHHHHHHHh
Confidence 999999999766 4 789998873 577777665544
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-17 Score=166.01 Aligned_cols=174 Identities=14% Similarity=0.079 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc--------CC-----C-EEeecCCCCCccccCC
Q 016668 144 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--------PH-----D-RIMGLDLPHGGHLSHG 209 (385)
Q Consensus 144 ~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--------pG-----D-~Vl~~~~~~ggh~s~~ 209 (385)
+...++|+.+.+++++++|++.. ....+++++||+||..++.++.+ +| | +|+++++.|.++.
T Consensus 128 ~~~~~le~~~~~~la~~~g~~~~-~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~--- 203 (504)
T 2okj_A 128 PVFVLMEQITLKKMREIVGWSSK-DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK--- 203 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSS-SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH---
T ss_pred hHHHHHHHHHHHHHHHHhCCCCC-CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH---
Confidence 55678999999999999999831 11245567788899999888743 67 6 6887766543321
Q ss_pred ccccccccccCcc---eEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCC--CCCCCCHHHHHHHHHHcC
Q 016668 210 FMTPKRRVSGTSI---YFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASA--YPRDFDYPRMRQIADAVG 279 (385)
Q Consensus 210 ~~~~~~~~~~~g~---~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklIi~~~s~--~~~~~dl~~I~~ia~~~g 279 (385)
+.+...|. .+..++ ++ +++.+|+++|++.+++. +|++|++..++ +|...|+++|+++|+++|
T Consensus 204 -----~~~~~~g~g~~~v~~v~--~~-~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g 275 (504)
T 2okj_A 204 -----KAGAALGFGTDNVILIK--CN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 275 (504)
T ss_dssp -----HHHHHTTSCGGGEEEEC--BC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred -----HHHHHcCCCcccEEEEe--cC-CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Confidence 12333443 455555 54 36899999999998653 47888876554 456789999999999999
Q ss_pred cEEEEeccccccccccCcccCCC---CCCcEEEECCCccCcccc-EEEEEEeCC
Q 016668 280 ALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPR-GGMIFFKKD 329 (385)
Q Consensus 280 a~livD~ah~~Gli~~g~~~~p~---~gaDiv~~S~hK~l~Gpr-gG~I~~~~~ 329 (385)
+++++|++|+.+......+...+ +++|++++++||++.+|. .|+++++++
T Consensus 276 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~ 329 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK 329 (504)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST
T ss_pred CEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECH
Confidence 99999999976654322221222 368999999999998775 588988875
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-17 Score=162.70 Aligned_cols=257 Identities=13% Similarity=0.040 Sum_probs=158.0
Q ss_pred hhhhhcccCChHHHHHHHHHHHHhhhccccccC----CCCCcHHHHHHHhhHhhccC--CCCCCCCCCCCCcHHHHHHHH
Q 016668 78 FVDYSLGEADPEVCEIITKEKERQFKSLELIAS----ENFTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELET 151 (385)
Q Consensus 78 ~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Lias----en~~s~~V~~al~s~l~~~y--~~g~p~~r~~~G~~~~~~le~ 151 (385)
+++++.+...+..+..+.+.. ....-|+|-.+ +.++++.+.+++...+.+.. ..+|+. ..|.+ ++++
T Consensus 53 ~~s~~~~~~~~s~~~~~~~~~-~~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~---~~g~~---~lr~ 125 (448)
T 3aow_A 53 FFSKKALEMRASEVRELLKLV-ETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGT---TKGFT---PLRE 125 (448)
T ss_dssp GCCHHHHHCCCCHHHHHHHHH-HTSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCC---TTCCH---HHHH
T ss_pred HhhHHHhcCCCcHHHHHHHhc-cCCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCC---CCCcH---HHHH
Confidence 355555555554433332221 12234555322 23367889988877765321 113332 12333 6777
Q ss_pred HHHHHHHHHcCCC-CCCCcceeecCC-cHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEec
Q 016668 152 LCQKRALAAFNLD-ENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY 229 (385)
Q Consensus 152 ~~~~~la~lfg~~-~~~~~~~V~~~s-Gs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~ 229 (385)
.+.+++.+.+|.+ .+ +|.+++ |++|+..++.++++|||+|++.+|.|.++.. .+...|..+..++
T Consensus 126 ~ia~~~~~~~g~~~~~----~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~v~- 192 (448)
T 3aow_A 126 TLMKWLGKRYGISQDN----DIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQ--------AFNFYEPQYIQIP- 192 (448)
T ss_dssp HHHHHHHHHHCCCTTS----EEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCCEEEEEE-
T ss_pred HHHHHHHHhcCcCChh----hEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHH--------HHHHcCCEEEEec-
Confidence 7777777777983 32 344444 5679999999999999999999987655421 2345666544444
Q ss_pred cccCCCCCCCHHHHHHHhh----h-cCCcEEE-EcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcc
Q 016668 230 RLDESTGLVDYDMLEKTAI----L-FRPKLII-AGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 230 ~~~~~~~~iD~d~le~~i~----~-~~pklIi-~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~ 298 (385)
.++ ++ +|+++|++.++ + .++|+|+ +..++|| ...+ +++|.++|+++|++||+|++|.. +...+..
T Consensus 193 -~~~-~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~-~~~~g~~ 268 (448)
T 3aow_A 193 -LDD-EG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGE-LRYSGNP 268 (448)
T ss_dssp -EET-TE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTT-CBCSSCC
T ss_pred -cCC-CC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCcc-ccCCCCC
Confidence 553 33 89999999986 3 2688875 4555555 4444 67899999999999999999854 4443332
Q ss_pred -cCC--CC--CCcEEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 299 -ADP--FK--YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 299 -~~p--~~--gaDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++. ++ +.++++.|++|+| +|.|.|++++++ ++.+++.........+ ++....++.+.+|+
T Consensus 269 ~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~------~l~~~l~~~~~~~~~~-~~~~~q~a~~~~L~ 334 (448)
T 3aow_A 269 EKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDP------GIIRKMEIAKQSTDLC-TNVFGQVVAWRYVD 334 (448)
T ss_dssp CCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECH------HHHHHHHHHHHHHHSS-CCHHHHHHHHHHHH
T ss_pred CcCHHhcCCCCCEEEEccchhhccccccEEEEEeCH------HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 221 22 3457899999998 466789999986 6767665433222222 33344444444554
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=161.83 Aligned_cols=207 Identities=12% Similarity=0.082 Sum_probs=136.7
Q ss_pred HhhhccccccCCCCC--cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc
Q 016668 100 RQFKSLELIASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG 177 (385)
Q Consensus 100 ~~~~~l~Liasen~~--s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG 177 (385)
++...+.+..++|+. +|.|++++...+.. ..|+..+...+++ +++++++|.+. .+.++||
T Consensus 11 ~~~~~~~~~~~~~~~g~~p~v~~ai~~~~~~---------~~~~~~~~~~~l~----~~la~~~~~~~-----~i~~~~g 72 (359)
T 3pj0_A 11 QKTPYKLGGNGPRNVGVLTEALQNIDDNLES---------DIYGNGAVIEDFE----TKIAKILGKQS-----AVFFPSG 72 (359)
T ss_dssp HTCSEESSSSSCCBHHHHHHHTTTSCTTCBC---------CBTTBSHHHHHHH----HHHHHHHTCSE-----EEEESCH
T ss_pred HhcchhhcCCCccccCCCHHHHHHHHhhccc---------CcccCCHHHHHHH----HHHHHHhCCCc-----EEEeCCH
Confidence 344667777888888 88999988753211 1122234344444 57888999876 3667899
Q ss_pred HHHHHHHHHHhccCCCE--EeecCCCCCccccCCcccccccc-ccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcE
Q 016668 178 SPANFEVYTAILKPHDR--IMGLDLPHGGHLSHGFMTPKRRV-SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKL 254 (385)
Q Consensus 178 s~A~~~a~~all~pGD~--Vl~~~~~~ggh~s~~~~~~~~~~-~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pkl 254 (385)
+.|+..++.+++++||+ |++.++.|... +.. ..+ ...|.. +++++. +++.+|++++++. ..++|+
T Consensus 73 ~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~--~~~----~~~~~~~g~~--~~~v~~--~~~~~d~~~l~~~--~~~~~~ 140 (359)
T 3pj0_A 73 TMAQQIALRIWADRKENRRVAYHPLSHLEI--HEQ----DGLKELQQIT--PLLLGT--ANQLLTIDDIKSL--REPVSS 140 (359)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECTTCHHHH--SST----THHHHHHCCE--EEECSC--TTSCCCHHHHHTC--SSCCSE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEeccceeee--hhc----chHHHhcCce--EEecCC--cCCCcCHHHHHhc--cCCceE
Confidence 99999999999999997 44444322111 100 011 234553 444434 3578999999987 347999
Q ss_pred EEEcCCCC---CCCCCHH---HHHHHHHHcCcEEEEecccccccc-ccCcccCCC-CCCcEEEECCCccCccccEEEEEE
Q 016668 255 IIAGASAY---PRDFDYP---RMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFF 326 (385)
Q Consensus 255 Ii~~~s~~---~~~~dl~---~I~~ia~~~ga~livD~ah~~Gli-~~g~~~~p~-~gaDiv~~S~hK~l~GprgG~I~~ 326 (385)
|+++++++ +...+.+ +|.++|+++|++|++|++|..+.. ..+..+..+ .++|+++.|+||+|.||.||+++.
T Consensus 141 v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~ 220 (359)
T 3pj0_A 141 VLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAG 220 (359)
T ss_dssp EEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEE
T ss_pred EEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEEC
Confidence 99877654 3455654 559999999999999999865432 112111112 267999999999998887777777
Q ss_pred eCCCCchhHHHHHHhh
Q 016668 327 KKDPVLGVELESAINN 342 (385)
Q Consensus 327 ~~~~~~~~~~~~~i~~ 342 (385)
++ ++.+++..
T Consensus 221 ~~------~l~~~~~~ 230 (359)
T 3pj0_A 221 ND------DFVQEAKI 230 (359)
T ss_dssp CH------HHHHHHHH
T ss_pred CH------HHHHHHHH
Confidence 76 67776654
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=167.55 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=123.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|...|+ +++..+++|+ ++++++|.+. .+.++||+.|+..++.++++|||+|++.++.|++.....
T Consensus 73 ~~~y~r~--~~p~~~~le~----~lA~l~g~~~-----~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~--- 138 (430)
T 3ri6_A 73 GHVYSRS--SNPTVEDLEQ----RLKNLTGALG-----VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLF--- 138 (430)
T ss_dssp ---------CCHHHHHHHH----HHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH---
T ss_pred CccccCC--CCHHHHHHHH----HHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHH---
Confidence 3444443 5676666665 6888999875 467889999999999999999999999998876543210
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
...+...|..+..++ .+ |++++++.+++ ++|+|+++.+++| ...|+++|+++|+++|++|++|++|+.
T Consensus 139 -~~~~~~~G~~~~~v~--~~------d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~ 208 (430)
T 3ri6_A 139 -QKTLPSFGIEVRFVD--VM------DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTP 208 (430)
T ss_dssp -HTHHHHTTCEEEEEC--TT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSC
T ss_pred -HHHHHHcCCEEEEeC--CC------CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 002234565444333 32 89999999965 7899999877765 678999999999999999999999976
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCccc---cEEEEEEeCC
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKD 329 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~ 329 (385)
+.. ..+.+ ++|+++.|+||+|.|+ .||+++.+.+
T Consensus 209 ~~~-----~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~ 246 (430)
T 3ri6_A 209 PYL-----LEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGL 246 (430)
T ss_dssp TTT-----CCGGGGTCSEEEEECCCEEETTEEECCEEEEECSC
T ss_pred ccc-----CChHHcCCEEEEECCcccccCCCCceEEEEEECCh
Confidence 543 34555 8999999999999876 6788886543
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-18 Score=169.27 Aligned_cols=245 Identities=13% Similarity=0.050 Sum_probs=149.6
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCC-CCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~-~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
+.+.+++..+|+.|++++...+.+.+..|..- ...+.+.. ..++.+.+++++++++|++.+ ..+.+.+.+|++|+..
T Consensus 6 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~g~~~~-~~~i~~t~g~t~a~~~ 83 (362)
T 2c0r_A 6 YNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAV-YEAVHNEAQARLLALLGNPTG-YKVLFIQGGASTQFAM 83 (362)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHH-HHHHHHHHHHHHHHHTTCCSS-EEEEEESSHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHH-HHHHHHHHHHHHHHHhCCCCC-cEEEEECCCchHHHHH
Confidence 45668888999999999988765432211110 00111222 234555688899999999752 1122333566789999
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCC-CCCHHHHHHHhhhcCCcEEEEcCCCC
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTG-LVDYDMLEKTAILFRPKLIIAGASAY 262 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~-~iD~d~le~~i~~~~pklIi~~~s~~ 262 (385)
++.++++|||+|+++++. ++++.+. ..+...| .+..++++.+.+.+ .+|.++++ +++ ++|+|++..+++
T Consensus 84 ~~~~l~~~gd~vl~~~~~---~~~~~~~---~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-~t~~v~~~~~~n 153 (362)
T 2c0r_A 84 IPMNFLKEGQTANYVMTG---SWASKAL---KEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-NAAYLHLTSNET 153 (362)
T ss_dssp HHHHHCCTTCEEEEEECS---HHHHHHH---HHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-TEEEEEEESEET
T ss_pred HHHhcCCCCCeEEEEecC---cHhHHHH---HHHHHhC-CeEEEecccccccccCCCHHHcc--cCC-CcCEEEEeCCcC
Confidence 999999999999887643 2222110 1233456 66666643211122 46776654 433 689888766554
Q ss_pred C--C-CCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 263 P--R-DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 263 ~--~-~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
+ . ..|+++| +|+++++|++|..|.. +.++...|++++|+||++ ||.| |+++++++ +.+
T Consensus 154 ~tG~~~~~l~~i------~~~~vivD~a~~~~~~-----~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~------~~~ 215 (362)
T 2c0r_A 154 IEGAQFKAFPDT------GSVPLIGDMSSDILSR-----PFDLNQFGLVYAGAQKNL-GPSGVTVVIVRED------LVA 215 (362)
T ss_dssp TTTEECSSCCCC------TTSCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTT-CCSSCEEEEEEGG------GSS
T ss_pred ccceeccccccc------CCCEEEEEChhhccCC-----ccchhHCcEEEEeccccc-cCcCcEEEEEcHH------HHh
Confidence 4 3 2466665 8999999999976532 222333499999999998 6877 99999885 222
Q ss_pred HHhhc---c--------CCCccCCChHHHHHHHHHHHHHhhCc-hHHHHHHHH
Q 016668 339 AINNA---V--------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFKVYQNKS 379 (385)
Q Consensus 339 ~i~~~---~--------fp~~qg~p~~~~iaala~Al~e~~~~-~~~~y~~~v 379 (385)
++... . .....++++...++++..|++.+... .+++..++.
T Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 268 (362)
T 2c0r_A 216 ESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQAN 268 (362)
T ss_dssp SCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 22110 0 01123567777888888899865443 234444333
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-17 Score=166.87 Aligned_cols=202 Identities=14% Similarity=0.052 Sum_probs=137.2
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCC-------cceeecCCcHHHHH
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKW-------GVNVQPLSGSPANF 182 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~-------~~~V~~~sGs~A~~ 182 (385)
+...++..+.+.+.+.+. .... .|...+...++|+.+.+|+++++|.+...+ +..+++++||+||+
T Consensus 87 ~~~~~~~~~~~~~~~~~n-~~~~------~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~ 159 (481)
T 4e1o_A 87 ALTSWPSLLGDMLADAIN-CLGF------TWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTL 159 (481)
T ss_dssp CCCCHHHHHHHHHHHHHC-CCCS------STTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-cccC------CcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHH
Confidence 333344555555555543 2211 133456677999999999999999986310 12467788999999
Q ss_pred HHHHHhcc-------------------CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHH
Q 016668 183 EVYTAILK-------------------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDML 243 (385)
Q Consensus 183 ~a~~all~-------------------pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~l 243 (385)
.++.+..+ |+++|++.+..|. +.. +.+.+.|..+..++ ++ +++.+|+++|
T Consensus 160 ~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~---s~~-----~~~~~~g~~~~~v~--~~-~~~~~d~~~L 228 (481)
T 4e1o_A 160 IALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHS---SVE-----KAGLISLVKMKFLP--VD-DNFSLRGEAL 228 (481)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCH---HHH-----HHHHHHTCEEEEEC--CC-TTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchH---HHH-----HHHHhCCCceEEEE--cC-CCCcCCHHHH
Confidence 88876632 6788998876543 211 23345566555544 54 4689999999
Q ss_pred HHHhhhcC-----CcEEEEcC--CCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CCCcEEEECCC
Q 016668 244 EKTAILFR-----PKLIIAGA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTH 313 (385)
Q Consensus 244 e~~i~~~~-----pklIi~~~--s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~gaDiv~~S~h 313 (385)
++.+++.+ |++|++.. +.++...|+++|+++|+++|+++++|+||+.+..........+ +.+|++++++|
T Consensus 229 e~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~h 308 (481)
T 4e1o_A 229 QKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPS 308 (481)
T ss_dssp HHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHH
T ss_pred HHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChH
Confidence 99996532 66665543 3456788999999999999999999999976644332222212 24699999999
Q ss_pred ccCccccE-EEEEEeCC
Q 016668 314 KSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 314 K~l~Gprg-G~I~~~~~ 329 (385)
|+|.+|.| |+++++++
T Consensus 309 K~l~~p~g~g~l~~~~~ 325 (481)
T 4e1o_A 309 KWMMVHFDCTGFWVKDK 325 (481)
T ss_dssp HHSSCCSSCEEEEESBH
T ss_pred HhcCCCCceEEEEEeCH
Confidence 99998866 77777764
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-17 Score=165.63 Aligned_cols=165 Identities=17% Similarity=0.180 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh----ccCCC-----EEeecCCCCCccccCCccccccc
Q 016668 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI----LKPHD-----RIMGLDLPHGGHLSHGFMTPKRR 216 (385)
Q Consensus 146 ~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al----l~pGD-----~Vl~~~~~~ggh~s~~~~~~~~~ 216 (385)
..++++.+++++++++|++. +.+++.+|+.|+..++.++ .++|| +|+++++.|+++.. .
T Consensus 105 ~~~l~~~l~~~la~~~g~~~----~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~--------~ 172 (474)
T 1wyu_B 105 ALRLMWELGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPA--------T 172 (474)
T ss_dssp HHHHHHHHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHH--------H
T ss_pred HHHHHHHHHHHHHHHHCCCc----eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHH--------H
Confidence 34677778899999999976 2445677888998766554 46998 99999887655431 3
Q ss_pred cccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCC-CCHHHHHHHHHHcCcEEEEeccccccccc
Q 016668 217 VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRD-FDYPRMRQIADAVGALLMMDMAHISGLVA 294 (385)
Q Consensus 217 ~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~~~-~dl~~I~~ia~~~ga~livD~ah~~Gli~ 294 (385)
+...|..+..++ ++ +++.+|+++|++.+++ ++++|++..++ +|.. .|+++|+++|+++|+++++|++|..+..
T Consensus 173 ~~~~G~~vv~v~--~~-~~~~~d~~~L~~~i~~-~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~- 247 (474)
T 1wyu_B 173 ASMAGYQVREIP--SG-PEGEVDLEALKRELGP-HVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIM- 247 (474)
T ss_dssp HHHTTCEEEEEC--BC-TTSSBCHHHHHHHCST-TEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT-
T ss_pred HHHCCCEEEEec--CC-CCCCcCHHHHHHhhCC-CceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhc-
Confidence 456676555554 54 3678999999999965 67888887654 3555 5899999999999999999999965543
Q ss_pred cCcccCCCC-CCcEEEECCCccCccc------cEEEEEEeCC
Q 016668 295 ASVVADPFK-YCDVVTTTTHKSLRGP------RGGMIFFKKD 329 (385)
Q Consensus 295 ~g~~~~p~~-gaDiv~~S~hK~l~Gp------rgG~I~~~~~ 329 (385)
+.. .+.+ ++|++++|+||+|.+| +.|+++++++
T Consensus 248 -g~~-~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~ 287 (474)
T 1wyu_B 248 -GWA-RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH 287 (474)
T ss_dssp -TTC-CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG
T ss_pred -cCC-CcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHH
Confidence 111 2222 7899999999998655 6799999884
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=163.92 Aligned_cols=173 Identities=13% Similarity=0.058 Sum_probs=125.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-------c-CCC------EEeecCCCCCccccC
Q 016668 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL-------K-PHD------RIMGLDLPHGGHLSH 208 (385)
Q Consensus 143 ~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all-------~-pGD------~Vl~~~~~~ggh~s~ 208 (385)
.+...++|+.+++++++++|++.. ..+++.+||+||..++.++. + +|| +|++.+..|.+..
T Consensus 143 s~~~~~le~~~~~~la~l~g~~~~---~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~-- 217 (515)
T 2jis_A 143 APVFVLMEEEVLRKLRALVGWSSG---DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ-- 217 (515)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSC---EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--
T ss_pred chHHHHHHHHHHHHHHHHhCCCCC---CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHH--
Confidence 355668899999999999999843 23556677889998888763 3 687 7888776543321
Q ss_pred CccccccccccCcc---eEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEEEEcCCC--CCCCCCHHHHHHHHHHc
Q 016668 209 GFMTPKRRVSGTSI---YFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAGASA--YPRDFDYPRMRQIADAV 278 (385)
Q Consensus 209 ~~~~~~~~~~~~g~---~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklIi~~~s~--~~~~~dl~~I~~ia~~~ 278 (385)
+.+...|. .+..++ ++ +++.+|+++|++.+++. +|++|++..++ +|...|+++|+++|+++
T Consensus 218 ------~~~~~~g~g~~~v~~v~--~~-~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~ 288 (515)
T 2jis_A 218 ------KGAAFLGLGTDSVRVVK--AD-ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRH 288 (515)
T ss_dssp ------HHHHHTTSCGGGEEEEC--BC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH
T ss_pred ------HHHHHcCCCCCcEEEEe--cC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc
Confidence 12334444 455555 54 36789999999998653 47888776554 46678999999999999
Q ss_pred CcEEEEeccccccccccCcccCCCC---CCcEEEECCCccCccccE-EEEEEeCC
Q 016668 279 GALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 279 ga~livD~ah~~Gli~~g~~~~p~~---gaDiv~~S~hK~l~Gprg-G~I~~~~~ 329 (385)
|+++++|++|+.+......+...+. ++|++++|+||++.+|.| |+++++++
T Consensus 289 g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~ 343 (515)
T 2jis_A 289 GLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDT 343 (515)
T ss_dssp TCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCC
T ss_pred CCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeCh
Confidence 9999999999766553322221233 689999999999988865 88888874
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=169.85 Aligned_cols=234 Identities=13% Similarity=0.084 Sum_probs=155.1
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCC-CCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeec--CCcHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPG-KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP--LSGSPANFEVY 185 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~-~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~--~sGs~A~~~a~ 185 (385)
++..+.|+.|++++...+.+.+..+... .....+.++.+.+++ +++.++++||++.. . +|.+ .+||.++.+++
T Consensus 19 at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~-ar~~la~ll~~~~~-~--evif~t~~~T~a~n~a~ 94 (377)
T 3e77_A 19 YFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINN-TENLVRELLAVPDN-Y--KVIFLQGGGCGQFSAVP 94 (377)
T ss_dssp ECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHH-HHHHHHHHHTCCTT-E--EEEEESSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHH-HHHHHHHHhCCCCC-C--eEEEEcCchHHHHHHHH
Confidence 6777889999999998887655322111 113335555555555 89999999999752 1 3444 45778999999
Q ss_pred HHhccC--CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC--C
Q 016668 186 TAILKP--HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS--A 261 (385)
Q Consensus 186 ~all~p--GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s--~ 261 (385)
.+++++ ||+|++... |++++.++ +.+...|.. ...++++ .++.+|+++++..+++ ++++|.+... .
T Consensus 95 ~~l~~~~~Gd~v~~~~~---g~~~~~~~---~~a~~~G~~--~~~~~~~-~~~~~~~~~~~~~i~~-~t~lV~~~h~et~ 164 (377)
T 3e77_A 95 LNLIGLKAGRCADYVVT---GAWSAKAA---EEAKKFGTI--NIVHPKL-GSYTKIPDPSTWNLNP-DASYVYYCANETV 164 (377)
T ss_dssp HHHGGGSTTCEEEECCC---SHHHHHHH---HHHTTTSEE--EECSCCC-SSSCSCCCGGGCCCCT-TCSCEEEESEETT
T ss_pred HhccCCCCCCeEEEEEC---CHHHHHHH---HHHHHhCCc--eEEeccC-CCcCCCCChHHhccCC-CccEEEEeCccCc
Confidence 999865 999987654 45555432 223445643 3333343 2345666666665543 6888866443 3
Q ss_pred CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCC-------c-
Q 016668 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV-------L- 332 (385)
Q Consensus 262 ~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~-------~- 332 (385)
+|...|+ +|+++|+++++|++|+.|.. |-.++..|++++|.||++ ||.| |+++.+++.. .
T Consensus 165 tG~~~pi-----i~~~~~~~~~vD~~q~~g~~-----~id~~~~~~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~~~p~ 233 (377)
T 3e77_A 165 HGVEFDF-----IPDVKGAVLVCDMSSNFLSK-----PVDVSKFGVIFAGAQKNV-GSAGVTVVIVRDDLLGFALRECPS 233 (377)
T ss_dssp TTEECSS-----CCCCTTCCEEEECTTTTTSS-----CCCGGGCSEEEEEGGGTT-SCTTCEEEEEETTSCSCCCTTSCG
T ss_pred hheEchh-----hhccCCCEEEEEcccccCCC-----CCchhhcCEEEEeccccc-CCCccEEEEEcHHHHhhccCCCCc
Confidence 5777787 47889999999999987743 223334568999999999 8988 8888888632 0
Q ss_pred hhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCc
Q 016668 333 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
+.++....+. ....++|+...++++..|++.+.+.
T Consensus 234 ~~~~~~~~~~---~~~~~Tp~v~~i~~l~~al~~l~~~ 268 (377)
T 3e77_A 234 VLEYKVQAGN---SSLYNTPPCFSIYVMGLVLEWIKNN 268 (377)
T ss_dssp GGCHHHHHTT---TTCSSCCCHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHhhc---CCCCCCchHHHHHHHHHHHHHHHHc
Confidence 1122222221 2234689999999999999988766
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=163.85 Aligned_cols=234 Identities=11% Similarity=0.056 Sum_probs=155.0
Q ss_pred hccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCC---CCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceee--cCCc
Q 016668 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKR---YYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQ--PLSG 177 (385)
Q Consensus 103 ~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r---~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~--~~sG 177 (385)
+.+++.|....+++.|++++...+.+.+. ++.+. .+.+.++.+.+++ +++.++++||++.. -+|. +.+|
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~--~~~s~~~~~hr~~~~~~~~~~-~r~~la~ll~~~~~---~~v~f~t~~~ 78 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQG--RGYSIMEISHRTKVFEEVHFG-AQEKAKKLYELNDD---YEVLFLQGGA 78 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGG--SSSCGGGSCSSSHHHHHHHHH-HHHHHHHHHTCCTT---EEEEEESSHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhccc--CCceeeccCCCCHHHHHHHHH-HHHHHHHHhCCCCC---ceEEEEcCcH
Confidence 44678899999999999999988765443 33321 2335555555555 89999999999642 1344 4557
Q ss_pred HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCC-CCHHHHHHHhhhcCCcEEE
Q 016668 178 SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-VDYDMLEKTAILFRPKLII 256 (385)
Q Consensus 178 s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~-iD~d~le~~i~~~~pklIi 256 (385)
|.++.+++.+++ +||+++.... |+++|.++. .+...|..+..++ ++.+... ++++. + +++ ++++|.
T Consensus 79 T~a~n~~~~~~~-~~~~~~~i~~---~~~~~~~~~---~a~~~G~~v~~~~--~~~~g~~~~~~~~-~--l~~-~t~lv~ 145 (361)
T 3m5u_A 79 SLQFAMIPMNLA-LNGVCEYANT---GVWTKKAIK---EAQILGVNVKTVA--SSEESNFDHIPRV-E--FSD-NADYAY 145 (361)
T ss_dssp HHHHHHHHHHHC-CSSCEEEEEC---SHHHHHHHH---HHHHTTCCEEEEE--ECTTTTSCSCCCC-C--CCT-TSSEEE
T ss_pred HHHHHHHHHhcC-CCCeEEEEeC---CHHHHHHHH---HHHHcCCceEEEe--cccCcCCCcCChh-h--cCC-CCCEEE
Confidence 789999999999 8997643321 344554421 2234566666666 4432211 45555 3 654 789887
Q ss_pred EcCCC--CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCCch
Q 016668 257 AGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLG 333 (385)
Q Consensus 257 ~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~ 333 (385)
+.... +|...|. |++ +|+++++|++|+.|.. |-.++..|++++|.||++ ||.| |+++.++
T Consensus 146 ~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~-----~id~~~~d~~~~s~~K~~-gp~G~g~l~~~~----- 208 (361)
T 3m5u_A 146 ICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSR-----KVDFSNIALFYGGVQKNA-GISGLSCIFIRK----- 208 (361)
T ss_dssp EESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSS-----CCCCTTEEEEEEETTTTS-SCTTCEEEEEEH-----
T ss_pred EeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCC-----CCCcccCCEEEEechhcc-CCCccEEEEEcH-----
Confidence 65433 3655441 344 4999999999987743 333446899999999998 7998 8888887
Q ss_pred hHHHHHHhhcc------------CCCccCCChHHHHHHHHHHHHHhhCc-hHH
Q 016668 334 VELESAINNAV------------FPGLQGGPHNHTIGGLAVCLKHAQSP-EFK 373 (385)
Q Consensus 334 ~~~~~~i~~~~------------fp~~qg~p~~~~iaala~Al~e~~~~-~~~ 373 (385)
++.+++.... .....++|+...+.++..|++.+.+. +..
T Consensus 209 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~ 260 (361)
T 3m5u_A 209 -DMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLD 260 (361)
T ss_dssp -HHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHH
T ss_pred -HHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHH
Confidence 3444432200 11223679999999999999988776 444
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-16 Score=156.61 Aligned_cols=198 Identities=15% Similarity=0.109 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHcCCCCCC------CcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccC
Q 016668 148 ELETLCQKRALAAFNLDENK------WGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGT 220 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~------~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~ 220 (385)
++++..++++++.+|.+... . .+|.+++| ++|+..++.++++|||+|++.+|.|.++.. .+...
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~ 152 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQ-MDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ--------SLHPL 152 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTC-EEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHGGG
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCc-CcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH--------HHHHc
Confidence 67777788888889987521 0 14555555 569999999999999999999987655421 33456
Q ss_pred cceEEEEeccccCCCCCCCHHHHHHHhhh-----------cCCcEEEE-cCCCCC--CCCC---HHHHHHHHHHcCcEEE
Q 016668 221 SIYFESMPYRLDESTGLVDYDMLEKTAIL-----------FRPKLIIA-GASAYP--RDFD---YPRMRQIADAVGALLM 283 (385)
Q Consensus 221 g~~~~~i~~~~~~~~~~iD~d~le~~i~~-----------~~pklIi~-~~s~~~--~~~d---l~~I~~ia~~~ga~li 283 (385)
|..+..++ +++ + .+|+++|++.++. .++|+|++ ..++|| ...+ +++|.++|+++|++||
T Consensus 153 g~~~~~v~--~~~-~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li 228 (425)
T 2r2n_A 153 GCNIINVA--SDE-S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLII 228 (425)
T ss_dssp TCEEEEEC--EET-T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEeC--cCC-C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 66544444 543 2 4899999998862 35788876 455655 4565 4589999999999999
Q ss_pred EeccccccccccCcc-cCC--CC--CCcEEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHH
Q 016668 284 MDMAHISGLVAASVV-ADP--FK--YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTI 357 (385)
Q Consensus 284 vD~ah~~Gli~~g~~-~~p--~~--gaDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~i 357 (385)
+|++|. ++.+.+.. ++. ++ +.++++.|+||+| +|+|.|++++++ ++.+.+......... +++....
T Consensus 229 ~De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~------~l~~~l~~~~~~~~~-~~~~~~q 300 (425)
T 2r2n_A 229 EDDPYY-FLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPK------PLIERVILHIQVSTL-HPSTFNQ 300 (425)
T ss_dssp EECTTG-GGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEH------HHHHHHHHHHHTTTC-SSCHHHH
T ss_pred EECCcc-cccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCH------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 999984 55544432 221 22 2347899999998 567889999987 576666543322222 3444455
Q ss_pred HHHHHHHHH
Q 016668 358 GGLAVCLKH 366 (385)
Q Consensus 358 aala~Al~e 366 (385)
++++.+|+.
T Consensus 301 ~a~~~~l~~ 309 (425)
T 2r2n_A 301 LMISQLLHE 309 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555666655
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=158.53 Aligned_cols=190 Identities=15% Similarity=0.111 Sum_probs=127.0
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
.+++.|++++...+.. +..+ |+..+ +.+.+++++++++| ... ..+.+++|++|+..++.++++||
T Consensus 19 ~~~~~v~~a~~~~~~~-~~~~------~~~~~----~~~~l~~~la~~~g-~~~---~v~~~~~gt~a~~~al~~~~~~g 83 (356)
T 1v72_A 19 GASPEVAQALVKHSSG-QAGP------YGTDE----LTAQVKRKFCEIFE-RDV---EVFLVPTGTAANALCLSAMTPPW 83 (356)
T ss_dssp CCCHHHHHHHHHTTSS-CCCS------TTCSH----HHHHHHHHHHHHHT-SCC---EEEEESCHHHHHHHHHHTSCCTT
T ss_pred CCCHHHHHHHHhhccC-cccc------cccch----HHHHHHHHHHHHhC-CCC---cEEEeCCccHHHHHHHHHhcCCC
Confidence 4589999998766421 1111 22223 34445678999999 331 13666888899999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccC--cceEEEEeccccCCCCCCCHHHHHH-Hhhhc------CCcEEEEcCCC-C
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEK-TAILF------RPKLIIAGASA-Y 262 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~--g~~~~~i~~~~~~~~~~iD~d~le~-~i~~~------~pklIi~~~s~-~ 262 (385)
|+|++.++.|++....+ .+... |..+. +++.+ ++.+|+++|++ .+++. ++++|++++++ +
T Consensus 84 d~vi~~~~~~~~~~~~~------~~~~~~~g~~~~--~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~t 153 (356)
T 1v72_A 84 GNIYCHPASHINNDECG------APEFFSNGAKLM--TVDGP--AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEV 153 (356)
T ss_dssp EEEEECTTSHHHHSSTT------HHHHHTTSCEEE--ECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTT
T ss_pred CEEEEcCccchhhhhch------HHHHHhCCcEEE--EecCC--CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCC
Confidence 99999887654432110 12333 65444 43343 36799999999 88642 57888877654 4
Q ss_pred CC---CCCHHHHHHHHHHcCcEEEEeccccccc-cccCcccCCC--C-CCcEEEECCCccCccccE-EEEEEeC
Q 016668 263 PR---DFDYPRMRQIADAVGALLMMDMAHISGL-VAASVVADPF--K-YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (385)
Q Consensus 263 ~~---~~dl~~I~~ia~~~ga~livD~ah~~Gl-i~~g~~~~p~--~-gaDiv~~S~hK~l~Gprg-G~I~~~~ 328 (385)
|. ..++++|.++|+++|++|++|++|..+. ...+..+..+ + ++|++++|+||+ .+|.| |++++++
T Consensus 154 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~ 226 (356)
T 1v72_A 154 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNT 226 (356)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSG
T ss_pred CccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECH
Confidence 55 3458899999999999999999986432 1223222333 2 678999999998 56767 6887766
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=156.91 Aligned_cols=190 Identities=13% Similarity=0.139 Sum_probs=132.7
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
.+++.|++++...+. .|..+ . |.. ++++.+++++++++|.+.+ ..+++.+|++|+..++.++++||
T Consensus 25 ~~~~~v~~a~~~~~~-~~~~~------~-g~~---~~~~~~~~~l~~~~g~~~~---~v~~~~g~t~a~~~~~~~~~~~g 90 (359)
T 1svv_A 25 GMHPKILDLMARDNM-TQHAG------Y-GQD---SHCAKAARLIGELLERPDA---DVHFISGGTQTNLIACSLALRPW 90 (359)
T ss_dssp CCCHHHHHHHHHHTT-CCCCS------T-TCS---HHHHHHHHHHHHHHTCTTS---EEEEESCHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHHHHHh-hcccc------c-ccc---HHHHHHHHHHHHHhCCCCc---cEEEeCCchHHHHHHHHHHhCCC
Confidence 568999999987764 23211 1 221 4555677889999998764 13455677889999999999999
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc------CCcEEEEcCCC-CCCC
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF------RPKLIIAGASA-YPRD 265 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~------~pklIi~~~s~-~~~~ 265 (385)
|+|++.++.|.++... ..+...|..+..++ .+ ++.+|+++|++.+++. ++++|++..++ +|..
T Consensus 91 d~vl~~~~~~~~~~~~------~~~~~~g~~~~~v~--~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~ 160 (359)
T 1svv_A 91 EAVIATQLGHISTHET------GAIEATGHKVVTAP--CP--DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQ 160 (359)
T ss_dssp EEEEEETTSHHHHSST------THHHHTTCCEEEEC--CT--TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCC
T ss_pred CEEEEcccchHHHHHH------HHHhcCCCeeEEEe--CC--CCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCcee
Confidence 9999999876554321 01345566555444 43 5789999999999764 27888876653 3566
Q ss_pred CC---HHHHHHHHHHcCcEEEEeccc---cccccccCcccCCC---CCCcEEEECCCccCccccE-EEEEEeCC
Q 016668 266 FD---YPRMRQIADAVGALLMMDMAH---ISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 266 ~d---l~~I~~ia~~~ga~livD~ah---~~Gli~~g~~~~p~---~gaDiv~~S~hK~l~Gprg-G~I~~~~~ 329 (385)
.+ +++|.++|+++|+++++|++| ..|.. +.....+ ..+|+++.|+||+ .+|.| |+++++++
T Consensus 161 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~~ 231 (359)
T 1svv_A 161 YTKQELEDISASCKEHGLYLFLDGARLASALSSP--VNDLTLADIARLTDMFYIGATKA-GGMFGEALIILNDA 231 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTST--TCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSGG
T ss_pred cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCC--CcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEccc
Confidence 66 899999999999999999998 22221 1111111 1578999999997 56766 88888764
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=161.55 Aligned_cols=223 Identities=20% Similarity=0.154 Sum_probs=145.5
Q ss_pred CcHHHHHHHhhHhhccC--CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC---CCCCCcceeecCCc-HHHHHHHHHH
Q 016668 114 TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNL---DENKWGVNVQPLSG-SPANFEVYTA 187 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y--~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~---~~~~~~~~V~~~sG-s~A~~~a~~a 187 (385)
+++.+.+++...+.... ..+|+.. .|.+ ++++...+++.+.+|. +.+ +|.+++| ++|+..++.+
T Consensus 59 ~~~~v~~a~~~~~~~~~~~~~~y~~~---~g~~---~lr~~la~~l~~~~g~~~~~~~----~v~~t~G~~~al~~~~~~ 128 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEYHYTLQYSTT---EGDP---VLKQQILKLLERMYGITGLDED----NLIFTVGSQQALDLIGKL 128 (425)
T ss_dssp CHHHHHHHHHHHHHHSHHHHTSCCCT---TCCH---HHHHHHHHHHHHHHCCCSCCGG----GEEEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcchhhcCCCCC---CCCH---HHHHHHHHHHHhccCCCCCCcc----cEEEeccHHHHHHHHHHH
Confidence 57889998887765321 1234321 2333 6777777777777794 442 3445554 6699999999
Q ss_pred hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh-------cCCcEE-EEcC
Q 016668 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-------FRPKLI-IAGA 259 (385)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~-------~~pklI-i~~~ 259 (385)
+++|||+|++.+|.|.++.. .+...|..+..++ +++ ++ +|++++++.+++ .++|+| ++..
T Consensus 129 l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~~~~v~--~~~-~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~ 196 (425)
T 1vp4_A 129 FLDDESYCVLDDPAYLGAIN--------AFRQYLANFVVVP--LED-DG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSN 196 (425)
T ss_dssp HCCTTCEEEEEESCCHHHHH--------HHHTTTCEEEEEE--EET-TE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECS
T ss_pred hCCCCCEEEEeCCCcHHHHH--------HHHHcCCEEEEec--cCC-CC-CCHHHHHHHHHhhhhcccCCCceEEEECCC
Confidence 99999999999887654321 2345666555444 543 23 899999998865 268887 4666
Q ss_pred CCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---C--CCcEEEECCCccCc-cccEEEEEEeC
Q 016668 260 SAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSLR-GPRGGMIFFKK 328 (385)
Q Consensus 260 s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~--gaDiv~~S~hK~l~-GprgG~I~~~~ 328 (385)
++|| ...+ +++|.++|+++|+++|+|++|.. +...+..+.++ + +.+++++|+||+|. |.|.|++++++
T Consensus 197 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~ 275 (425)
T 1vp4_A 197 FHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGA-LRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSK 275 (425)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTT-CBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCcc-ccCCCCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeCH
Confidence 6665 4444 67899999999999999999853 34333221222 1 34588999999984 66889999986
Q ss_pred CCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 329 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
++.+.+.....+... +++....++...+|+.
T Consensus 276 ------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~ 306 (425)
T 1vp4_A 276 ------EFIRKIVQAKQSADL-CSPAITHRLAARYLER 306 (425)
T ss_dssp ------HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhhhhcC-CCCHHHHHHHHHHHhc
Confidence 566666543222222 2344455555566654
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=159.86 Aligned_cols=177 Identities=16% Similarity=0.097 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHcC----CCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccc-cCcc
Q 016668 148 ELETLCQKRALAAFN----LDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS-GTSI 222 (385)
Q Consensus 148 ~le~~~~~~la~lfg----~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~-~~g~ 222 (385)
++++.+.+++.+.+| ++.+ ..+++.+|++||..++.++++|||+|++.+|.|.++.. .+. ..|.
T Consensus 90 ~l~~~la~~~~~~~~~~~~~~~~---~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~~g~ 158 (435)
T 3piu_A 90 AFKKAMVDFMAEIRGNKVTFDPN---HLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTGV 158 (435)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGG---GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTCC
T ss_pred HHHHHHHHHHHHhhCCCCCCCHH---HEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHH--------HHHHhcCC
Confidence 677776666666655 4443 23445566779999999999999999999987765421 222 4566
Q ss_pred eEEEEeccccCC-CCCCCHHHHHHHhhh-----cCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEecccccc
Q 016668 223 YFESMPYRLDES-TGLVDYDMLEKTAIL-----FRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 223 ~~~~i~~~~~~~-~~~iD~d~le~~i~~-----~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~G 291 (385)
.+..++ .+++ .+.+|+++|++.+++ .++|+|++..+++| ...+ +++|+++|+++|++||+|++|. +
T Consensus 159 ~~~~~~--~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~ 235 (435)
T 3piu_A 159 EIVPIH--CTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYS-G 235 (435)
T ss_dssp EEEEEE--CCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-G
T ss_pred EEEEee--CCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccc-c
Confidence 554444 4432 346899999999865 26788888777765 3444 6888899999999999999984 4
Q ss_pred ccccCcccCCC-C---C---------Cc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 292 LVAASVVADPF-K---Y---------CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 292 li~~g~~~~p~-~---g---------aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+.+.+....++ . . .| +++.|+||+| +|.|.|+++++++ ++.+.+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~-----~~~~~~~~~ 299 (435)
T 3piu_A 236 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDD-----MVVAAATKM 299 (435)
T ss_dssp GCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCH-----HHHHHHHHH
T ss_pred cccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCH-----HHHHHHHHH
Confidence 33333211111 1 1 23 7889999998 6778999999664 566666544
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-17 Score=159.82 Aligned_cols=176 Identities=19% Similarity=0.176 Sum_probs=128.2
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|...|+ +++..++++ +++++++|.+. .+.++||+.|+..++.+++++||+|++.++.|++.....
T Consensus 50 ~~~y~~~--~~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~--- 115 (389)
T 3acz_A 50 GHIYSRL--GNPTVEQFE----EMVCSIEGAAG-----SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLF--- 115 (389)
T ss_dssp CCCBTTT--CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHH---
T ss_pred CcccCCC--CChHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHH---
Confidence 3444443 456555555 46888999873 467889999999999999999999999998776542100
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
...+...|..+..++ . .|++++++.+++ ++++|++..+++| ...|+++|.++|+++|+++++|++|..
T Consensus 116 -~~~~~~~g~~~~~v~--~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~ 185 (389)
T 3acz_A 116 -THWLPRFGIEVDLID--T------SDVEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTS 185 (389)
T ss_dssp -HHHHHHTTCEEEEEC--T------TCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred -HHHHHHcCCEEEEEC--C------CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 001234565444433 2 489999999865 6899998877664 678999999999999999999999965
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhh
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+.. ..+++ ++|+++.|+||++.||. +|+++++++ ++.+++..
T Consensus 186 ~~~-----~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~-----~~~~~l~~ 231 (389)
T 3acz_A 186 PCF-----LKPLELGADIALHSVSKYINGHGDVIGGVSSAKTA-----EDIATIKF 231 (389)
T ss_dssp TTT-----CCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSH-----HHHHHHHH
T ss_pred ccc-----cCccccCCeEEEECChhhccCCCCceeEEEEECcH-----HHHHHHHH
Confidence 532 13445 78999999999997764 499998873 35555543
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-18 Score=171.72 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=128.6
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
+++++++ ||++. .+.+++| |+|+..++.++++|||+|++.++.|.++.. .+...|..+..++...
T Consensus 62 ~~~~la~-~g~~~-----~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~--------~~~~~G~~~~~v~~~~ 127 (446)
T 2x3l_A 62 SMKQVEK-HSDYD-----GYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLH--------ALDISQQEGHFIETHQ 127 (446)
T ss_dssp HHHHHCS-CTTEE-----EEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHH--------HHHHHTCCEEECEEEE
T ss_pred HHHHHHh-cCCCc-----eEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHH--------HHHHcCCeEEEEeCee
Confidence 5567889 99873 3455555 579999999999999999999886654321 3345566554444322
Q ss_pred cCCC---CCCCHHHHHHHhhhcCCcEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCc
Q 016668 232 DEST---GLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD 306 (385)
Q Consensus 232 ~~~~---~~iD~d~le~~i~~~~pklIi~~~s~-~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaD 306 (385)
+++. +.+|++++ +. .++|+|++..++ +|...|+++|.++|+++|+++++|++|+..+.+.+...+... ++|
T Consensus 128 ~~~~~~~~~~d~~~l---~~-~~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~D 203 (446)
T 2x3l_A 128 SPLTNHYNKVNLSRL---NN-DGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQAD 203 (446)
T ss_dssp CTTTSSEEEEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCS
T ss_pred ccccCcCCCCCHHHH---cC-CCceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCC
Confidence 4221 45788877 32 368888776554 577889999999999999999999999764433333112223 789
Q ss_pred EEEECCCccCccc-cEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhC
Q 016668 307 VVTTTTHKSLRGP-RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 307 iv~~S~hK~l~Gp-rgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~ 369 (385)
++++|+||++.|+ ++|+++++++.+ + ...+.........++++...++++..+++.+..
T Consensus 204 i~~~S~~K~l~~~~g~g~l~~~~~~i---~-~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~ 263 (446)
T 2x3l_A 204 YVVQSFHKTLPALTMGSVLYIHKNAP---Y-RENIIEYLSYFQTSSPSYLIMASLESAAQFYKT 263 (446)
T ss_dssp EEEECHHHHSSSCTTCEEEEEETTCT---T-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCccccccccccEEEEEcCCcC---C-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 9999999988776 569999988632 2 223322211223456788888888888776654
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=158.64 Aligned_cols=177 Identities=14% Similarity=0.099 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHcC----CCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcc
Q 016668 148 ELETLCQKRALAAFN----LDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (385)
Q Consensus 148 ~le~~~~~~la~lfg----~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (385)
++++.+.+++.+.+| ++.+ +|.+++| ++|+..++.++++|||+|++.+|.|.++.. . .....|.
T Consensus 87 ~lr~~la~~~~~~~g~~~~~~~~----~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~-~------~~~~~g~ 155 (428)
T 1iay_A 87 EFRKAIAKFMEKTRGGRVRFDPE----RVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR-D------LRWRTGV 155 (428)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCTT----SCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH-H------TTTTTCC
T ss_pred HHHHHHHHHHHHhcCCCCCCChh----hEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHH-H------HHHhcCC
Confidence 677777777777777 4443 3445555 569999999999999999999987765421 0 1124566
Q ss_pred eEEEEeccccCC-CCCCCHHHHHHHhhh-----cCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEecccccc
Q 016668 223 YFESMPYRLDES-TGLVDYDMLEKTAIL-----FRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 223 ~~~~i~~~~~~~-~~~iD~d~le~~i~~-----~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~G 291 (385)
.+..++ .+++ ++.+|++++++.++. .++|+|++..++|| ...+ +++|.++|+++|++||+|++|..
T Consensus 156 ~~~~v~--~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~- 232 (428)
T 1iay_A 156 QLIPIH--CESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAA- 232 (428)
T ss_dssp EEEEEC--CCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGG-
T ss_pred EEEEee--cCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccc-
Confidence 544444 4432 347899999998864 25788887766664 5677 89999999999999999999854
Q ss_pred ccccCc-ccCC--CC-C-------Cc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 292 LVAASV-VADP--FK-Y-------CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 292 li~~g~-~~~p--~~-g-------aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
+.+.+. +++. +. . .| +++.|+||+| +|.|.|+++++++ ++.+.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~-----~~~~~~~~~ 294 (428)
T 1iay_A 233 TVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND-----DVVNCARKM 294 (428)
T ss_dssp GCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH-----HHHHHHHHH
T ss_pred cccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCH-----HHHHHHHHH
Confidence 333322 1111 11 2 67 7899999998 6788899998543 566666544
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-18 Score=174.04 Aligned_cols=238 Identities=12% Similarity=0.076 Sum_probs=146.9
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCC---CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceee-cCCcHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGK---RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQ-PLSGSPA 180 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~---r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~-~~sGs~A 180 (385)
....|....+++.|++++...+.+.+. ++.+ ..+.+.++.+.+++ +++.++++||++.. . -.++ +.+||.+
T Consensus 29 yl~~agpt~~p~~V~~a~~~~~~~~~~--n~~s~~~~~h~~~~~~~~~~~-ar~~la~ll~~~~~-~-evif~t~~~T~a 103 (386)
T 3qm2_A 29 FNFSSGPAMLPAEVLKLAQQELCDWHG--LGTSVMEISHRGKEFIQVAEE-AEQDFRDLLNIPSN-Y-KVLFCHGGGRGQ 103 (386)
T ss_dssp EECCSSSCCCCHHHHHHHTCC-------------------------CCHH-HHHHHHHHHTCCTT-E-EEEEEESCTTHH
T ss_pred ccccCCCCCCCHHHHHHHHHHHHhccc--cCccccccCCCCHHHHHHHHH-HHHHHHHHhCCCCC-c-eEEEEcCCchHH
Confidence 345588999999999999987765443 3322 11224444445554 78999999999642 1 1233 3578899
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCC-CCHHHHHHHhhhcCCcEEEEcC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-VDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~-iD~d~le~~i~~~~pklIi~~~ 259 (385)
+..++.+++++||+|++... ++++|.++. .+...| .+.+++.+. ++.+. +|++++++.+++ ++++|.+..
T Consensus 104 ~n~ai~~l~~~gd~v~~~~~---~~~~~~~~~---~a~~~G-~v~~v~~~~-~~~G~~~~~~~~~~~l~~-~t~lV~~~h 174 (386)
T 3qm2_A 104 FAGVPLNLLGDKTTADYVDA---GYWAASAIK---EAKKYC-APQIIDAKI-TVDGKRAVKPMREWQLSD-NAAYLHYCP 174 (386)
T ss_dssp HHHHHHHHCTTCCEEEEEES---SHHHHHHHH---HHTTTS-EEEEEECEE-EETTEEEECCGGGCCCCT-TCSCEEECS
T ss_pred HHHHHHhccCCCCeEEEEeC---CHHHHHHHH---HHHHhC-CeEEEecCc-ccCCCCCCchHHHhhcCC-CCcEEEEEC
Confidence 99999999999999876553 455554421 233456 566666330 11343 777788777754 788887654
Q ss_pred CC--CCCC-CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCC----
Q 016668 260 SA--YPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPV---- 331 (385)
Q Consensus 260 s~--~~~~-~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~---- 331 (385)
.. +|.. .|+++|. +|+++++|++|+.|.. |-.++..|++++|.||++ ||.| |+++.+++..
T Consensus 175 ~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~-----pidv~~~~~~~~s~hK~l-GP~G~g~l~v~~~~~~~~~ 243 (386)
T 3qm2_A 175 NETIDGIAIDETPDFG-----PEVVVTADFSSTILSA-----PLDVSRYGVIYAGAQKNI-GPAGLTLVIVREDLLGKAH 243 (386)
T ss_dssp EETTTTEECCCCCCCC-----TTCCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTT-CCTTEEEEEEEGGGCSCCC
T ss_pred CcCCcCEecCchhhhc-----CCCEEEEEcccccCCC-----CCCccccCEEEEeccccc-CCCccEEEEECHHHHhhhc
Confidence 33 4774 7888875 7999999999987743 333334568889999998 7998 8888887631
Q ss_pred ---c-hhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCc
Q 016668 332 ---L-GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 332 ---~-~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
. +.++....+.... .++|+...++++..|++.+.+.
T Consensus 244 ~~~p~~~~~~~~~~~~~~---~gTp~v~~i~~l~~Al~~~~~~ 283 (386)
T 3qm2_A 244 ESCPSILDYTVLNDNDSM---FNTPPTFAWYLSGLVFKWLKAQ 283 (386)
T ss_dssp TTSCGGGCHHHHHHC----------CCSHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHhhcCCC---CCCCcHHHHHHHHHHHHHHHHh
Confidence 0 1112222222222 2468888999999999887665
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=160.54 Aligned_cols=225 Identities=18% Similarity=0.175 Sum_probs=139.4
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPH 192 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pG 192 (385)
.+++.+.+++... .. .|...+...+++ +.+++++|.+. .+.+++|++|+..++.++++||
T Consensus 55 ~~~~~~~~a~~~~-~~----------~y~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~~al~~l~~~g 114 (456)
T 2ez2_A 55 AMSDKQWAGMMMG-DE----------AYAGSENFYHLE----RTVQELFGFKH-----IVPTHQGRGAENLLSQLAIKPG 114 (456)
T ss_dssp CCCHHHHHHHTTC-CC----------CSSSCHHHHHHH----HHHHHHHCCSE-----EEEESSHHHHHHHHHHHHCCTT
T ss_pred cCCHHHHHHhhcc-hh----------hcccChhHHHHH----HHHHHHhCCCc-----EEEeCCcHHHHHHHHHHhCCCC
Confidence 3468888887511 01 122334444555 46788888864 4677889999999999999999
Q ss_pred CEEeecCCCC-CccccCCccccccccccCcceEEEEeccccC----C-----CCCCCHHHHHHHhhhcC---CcEEEEcC
Q 016668 193 DRIMGLDLPH-GGHLSHGFMTPKRRVSGTSIYFESMPYRLDE----S-----TGLVDYDMLEKTAILFR---PKLIIAGA 259 (385)
Q Consensus 193 D~Vl~~~~~~-ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~----~-----~~~iD~d~le~~i~~~~---pklIi~~~ 259 (385)
| +++++.| +.+. ..+...|..+..++ +++ + ++.+|+++|++.+++.+ +++|++++
T Consensus 115 d--i~~~~~~~~~~~--------~~~~~~G~~~~~v~--~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~ 182 (456)
T 2ez2_A 115 Q--YVAGNMYFTTTR--------YHQEKNGAVFVDIV--RDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAV 182 (456)
T ss_dssp C--EEEESSCCHHHH--------HHHHHTTCEEEECB--CGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred C--EeccccccchhH--------HHHHHcCCEEEEec--ccccccccccccccCCCCHHHHHHHHHhccccceeEEEEec
Confidence 9 5566654 3211 13445676544443 442 2 25789999999986532 37888875
Q ss_pred CCC---CCCCC---HHHHHHHHHHcCcEEEEecccccc---------ccccCcccC----CC-CCCcEEEECCCccCccc
Q 016668 260 SAY---PRDFD---YPRMRQIADAVGALLMMDMAHISG---------LVAASVVAD----PF-KYCDVVTTTTHKSLRGP 319 (385)
Q Consensus 260 s~~---~~~~d---l~~I~~ia~~~ga~livD~ah~~G---------li~~g~~~~----p~-~gaDiv~~S~hK~l~Gp 319 (385)
+++ |...+ +++|+++|+++|++||+|++|..| +...+.... .+ ...|++++|+||++..+
T Consensus 183 p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~ 262 (456)
T 2ez2_A 183 TVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN 262 (456)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS
T ss_pred cCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC
Confidence 554 34555 999999999999999999999765 333332110 01 25688888899986556
Q ss_pred cEEEEEEeCCCCchhHHHHHHhhccC--CC--ccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 320 RGGMIFFKKDPVLGVELESAINNAVF--PG--LQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 320 rgG~I~~~~~~~~~~~~~~~i~~~~f--p~--~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
+||+++++++ ++.+.+..... .+ ..++.+...+++++.++.+...+++.+
T Consensus 263 ~gG~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~ 316 (456)
T 2ez2_A 263 IGGFLCMNDD-----EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIE 316 (456)
T ss_dssp SCEEEEESCH-----HHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ceeEEEECCH-----HHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhHHHHHH
Confidence 7999998543 56555533211 11 122333334555455554444334433
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=161.40 Aligned_cols=218 Identities=17% Similarity=0.065 Sum_probs=138.0
Q ss_pred CcHHHHHHHhhHhhccC--CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhcc
Q 016668 114 TSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILK 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y--~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~ 190 (385)
+++.+.+++...+.... ..+|+.. .|.+ ++++ .+++++|++.+ +|.+++| ++|+..++.++++
T Consensus 48 ~~~~v~~a~~~~~~~~~~~~~~y~~~---~~~~---~l~~----~la~~~g~~~~----~v~~~~g~~~al~~~~~~~~~ 113 (397)
T 2zyj_A 48 PKEEAAEAAARILREKGEVALQYSPT---EGYA---PLRA----FVAEWIGVRPE----EVLITTGSQQALDLVGKVFLD 113 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCT---TCCH---HHHH----HHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhcchhhhCCCCC---CCCH---HHHH----HHHHHhCCChh----hEEEeccHHHHHHHHHHHhCC
Confidence 57889999877765311 1233321 1322 4554 56677787653 3445555 5699999999999
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEE-EcCCCCC--CCCC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII-AGASAYP--RDFD 267 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi-~~~s~~~--~~~d 267 (385)
|||+|++.+|.|.++.. .+...|..+..++ .++ ++ +|++++++.+++.++|+|+ +..+++| ...+
T Consensus 114 ~gd~Vl~~~p~y~~~~~--------~~~~~g~~~~~~~--~~~-~~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~ 181 (397)
T 2zyj_A 114 EGSPVLLEAPSYMGAIQ--------AFRLQGPRFLTVP--AGE-EG-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTP 181 (397)
T ss_dssp TTCEEEEEESCCHHHHH--------HHHTTCCEEEEEE--EET-TE-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCC
T ss_pred CCCEEEEeCCCcHHHHH--------HHHHcCCEEEecC--cCC-CC-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCC
Confidence 99999999887655321 2345566554444 443 33 8999999998765788874 5555554 4555
Q ss_pred ---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCc------EEEECCCccCc-cccEEEEEEeCCCCchhH
Q 016668 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCD------VVTTTTHKSLR-GPRGGMIFFKKDPVLGVE 335 (385)
Q Consensus 268 ---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaD------iv~~S~hK~l~-GprgG~I~~~~~~~~~~~ 335 (385)
+++|.++|+++|+++|+|++|.. +...|..+.++. +.| +++.|+||++. |.|.|++++++ +
T Consensus 182 ~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~------~ 254 (397)
T 2zyj_A 182 LPARKRLLQMVMERGLVVVEDDAYRE-LYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHP------E 254 (397)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTTT-CBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCH------H
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCccc-ccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCH------H
Confidence 45899999999999999999854 333332211221 222 78999999985 56789999986 5
Q ss_pred HHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 336 LESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 336 ~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
+.+.+.........+. +....++...+++
T Consensus 255 ~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~ 283 (397)
T 2zyj_A 255 ALQKLVQAKQGADLHT-PMLNQMLVHELLK 283 (397)
T ss_dssp HHHHHHHHHHHHHSSC-CHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCC-CHHHHHHHHHHHH
Confidence 7666654332222233 3333444444554
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=157.39 Aligned_cols=231 Identities=17% Similarity=0.160 Sum_probs=144.6
Q ss_pred hhhhcccCChHH-HHHHHHHHHHhh-hccccccC-----C--CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHH
Q 016668 79 VDYSLGEADPEV-CEIITKEKERQF-KSLELIAS-----E--NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDEL 149 (385)
Q Consensus 79 ~~~~l~~~dp~~-~~~i~~e~~~~~-~~l~Lias-----e--n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~l 149 (385)
+.+++...++.. +.+......... .-++|-.+ + .++++.|.+++...+.+....+|+. ..|.+ ++
T Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g~~---~l 97 (420)
T 4f4e_A 24 LFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLP---IDGIA---AY 97 (420)
T ss_dssp TTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCC---TTCCH---HH
T ss_pred HhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCC---CCCcH---HH
Confidence 356677777764 444444332222 34566544 2 2234899999988776533334543 23443 56
Q ss_pred HHHHHHHHHHHcCC--CCCCCcceeecCCcHHHHHHH--HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEE
Q 016668 150 ETLCQKRALAAFNL--DENKWGVNVQPLSGSPANFEV--YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE 225 (385)
Q Consensus 150 e~~~~~~la~lfg~--~~~~~~~~V~~~sGs~A~~~a--~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~ 225 (385)
++.+++++....+. +++.+ ..+++.+|++|+..+ +.++++|||+|++.+|.|.++.. .+...|..+.
T Consensus 98 r~~ia~~l~~~~~~~~~~~~~-~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~~~~ 168 (420)
T 4f4e_A 98 DASVQKLLLGDDSPLIAAGRV-VTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRA--------LFDMAGFEVV 168 (420)
T ss_dssp HHHHHHHHHCTTCHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHTTCCEE
T ss_pred HHHHHHHhcCCCccccccCce-EEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH--------HHHHcCCeEE
Confidence 65544444333331 12100 124445566799888 55778999999999987755421 3445676655
Q ss_pred EEeccccCCCCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCc-
Q 016668 226 SMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV- 297 (385)
Q Consensus 226 ~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~- 297 (385)
.+++. +++++.+|++++++.++. .++++|+++.++||+ .. ++++|+++|+++|+++++|++| .++..++.
T Consensus 169 ~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y-~~~~~~~~~ 246 (420)
T 4f4e_A 169 AYPYY-DAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAY-QGFGESIEA 246 (420)
T ss_dssp EEECE-ETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTSSSCTTG
T ss_pred Eeeee-ccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccc-ccccCCcch
Confidence 55531 334678999999999964 246788888777763 33 3778999999999999999997 55554321
Q ss_pred -ccC--CC---CCCcEEEECCCccC--ccccEEEEEE
Q 016668 298 -VAD--PF---KYCDVVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 298 -~~~--p~---~gaDiv~~S~hK~l--~GprgG~I~~ 326 (385)
.+. .+ ...++++.|+||++ +|+|.|+++.
T Consensus 247 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 283 (420)
T 4f4e_A 247 DAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSI 283 (420)
T ss_dssp GGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEE
T ss_pred hhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEE
Confidence 111 01 13357899999998 4889999865
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=162.85 Aligned_cols=177 Identities=12% Similarity=-0.024 Sum_probs=126.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCC------CcceeecCCcHHHHHHHHHHhc-------------------cCCCEE
Q 016668 141 GGNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAIL-------------------KPHDRI 195 (385)
Q Consensus 141 ~G~~~~~~le~~~~~~la~lfg~~~~~------~~~~V~~~sGs~A~~~a~~all-------------------~pGD~V 195 (385)
...+...++|+.+.+|+++++|.+... .+..+++++||+||+.++.+.. .|+++|
T Consensus 106 ~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 185 (475)
T 3k40_A 106 IASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVG 185 (475)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEE
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEE
Confidence 345677799999999999999998521 1124677889999998887652 245788
Q ss_pred eecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcC-----CcEEEEcC--CCCCCCCCH
Q 016668 196 MGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIAGA--SAYPRDFDY 268 (385)
Q Consensus 196 l~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~-----pklIi~~~--s~~~~~~dl 268 (385)
++....|.+.. +.+...|..+..++ ++ +++ +|+++|++.+++.+ |++|++.. +.++...|+
T Consensus 186 i~s~~~H~s~~--------~~~~~~g~~~~~v~--~d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l 253 (475)
T 3k40_A 186 YCSDQAHSSVE--------RAGLLGGVKLRSVQ--SE-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYL 253 (475)
T ss_dssp EEETTSCHHHH--------HHHHHHTCEEEEEC--CB-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred EECCCchHHHH--------HHHHHcCCceEEEE--CC-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCH
Confidence 88876543221 23445676555554 55 357 99999999986532 56565543 345778899
Q ss_pred HHHHHHHHHcCcEEEEeccccccccccCcccCCC---CCCcEEEECCCccCccccE-EEEEEeCC
Q 016668 269 PRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 269 ~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~gaDiv~~S~hK~l~Gprg-G~I~~~~~ 329 (385)
++|+++|+++|+++++|++|+.+..........+ +.+|.+++++||+|.+|.| |+++++++
T Consensus 254 ~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~ 318 (475)
T 3k40_A 254 DECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDP 318 (475)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSG
T ss_pred HHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCH
Confidence 9999999999999999999976644332222222 2579999999999988865 77887765
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=155.68 Aligned_cols=162 Identities=22% Similarity=0.250 Sum_probs=119.9
Q ss_pred HHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (385)
++.+++++|.+. .|.+++|++|+..++.+++++||+|++.++.|++... .+ .......|..+..++ .
T Consensus 58 ~~~la~~~~~~~-----~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~-~~---~~~~~~~g~~~~~~~--~-- 124 (386)
T 1cs1_A 58 QRALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYR-LF---DSLAKRGCYRVLFVD--Q-- 124 (386)
T ss_dssp HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH-HH---HHHHTTTSCEEEEEC--T--
T ss_pred HHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHH-HH---HHHHHhcCCEEEEeC--C--
Confidence 456888999873 4677999999999999999999999999987755321 00 001134555444333 2
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEE
Q 016668 234 STGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTT 310 (385)
Q Consensus 234 ~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~ 310 (385)
.|++++++.+++ ++++|++..++++ ...|+++|.++|+++|+++++|++|..+.. ..+++ +.|++++
T Consensus 125 ----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~-----~~~~~~~~di~~~ 194 (386)
T 1cs1_A 125 ----GDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL-----QNPLALGADLVLH 194 (386)
T ss_dssp ----TCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----CCGGGGTCSEEEE
T ss_pred ----CCHHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-----CCccccCceEEEE
Confidence 289999999865 7899998877654 678999999999999999999999965532 12334 7899999
Q ss_pred CCCccCcccc---EEEEEEeCCCCchhHHHHHHhhc
Q 016668 311 TTHKSLRGPR---GGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 311 S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
|+||++.||. ||+++++++ ++.+++...
T Consensus 195 s~sK~~~~~~~~~~G~~~~~~~-----~l~~~l~~~ 225 (386)
T 1cs1_A 195 SCTKYLNGHSDVVAGVVIAKDP-----DVVTELAWW 225 (386)
T ss_dssp ETTTTTTCSSCCCCEEEEESSH-----HHHHHHHHH
T ss_pred cCcccccCCCCceeEEEEeCcH-----HHHHHHHHH
Confidence 9999987664 489998874 466666543
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-17 Score=158.34 Aligned_cols=191 Identities=15% Similarity=0.141 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHc-CCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEE
Q 016668 148 ELETLCQKRALAAF-NLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (385)
Q Consensus 148 ~le~~~~~~la~lf-g~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (385)
++++ .+++++ +++.+ ..+.+++|+.|+..++.++++|||+|++.++.|.++.. .+...|..+..
T Consensus 67 ~l~~----~la~~~~~~~~~---~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~ 131 (375)
T 3op7_A 67 AFKK----SVSQLYTGVKPE---QILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD--------IPKSLGAEVDL 131 (375)
T ss_dssp HHHH----HHHTTSSSCCGG---GEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH--------HHHHTTCEEEE
T ss_pred HHHH----HHHHHhccCChh---hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCCEEEE
Confidence 5555 456666 45543 23445566789999999999999999999987655321 23456665555
Q ss_pred EeccccC-CCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccC
Q 016668 227 MPYRLDE-STGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (385)
Q Consensus 227 i~~~~~~-~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~ 300 (385)
++ +++ +++.+|++++++.++. ++|+|++..+++| ...+ +++|.++|+++|+++|+|++|.. +...+ .+.
T Consensus 132 v~--~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~-~~~~~-~~~ 206 (375)
T 3op7_A 132 WQ--IEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRS-FSELD-VPS 206 (375)
T ss_dssp EE--EEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCC-CSSSC-CCC
T ss_pred Ee--ccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc-ccccC-CCc
Confidence 55 442 2456899999999965 7999988877664 5677 99999999999999999999853 33221 111
Q ss_pred CCC--CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 301 PFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 301 p~~--gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
..+ +.++++.|++|++ +|.|+|++++++ ++.+.+.........+.+. ...++...+++
T Consensus 207 ~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~------~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 268 (375)
T 3op7_A 207 IIEVYDKGIAVNSLSKTYSLPGIRIGWVAANH------QVTDILRDYRDYTMICAGV-FDDLVAQLALA 268 (375)
T ss_dssp HHHHCTTEEEEEESSSSSSCGGGCCEEEECCH------HHHHHHTTTGGGTTSCCCH-HHHHHHHHHHH
T ss_pred hhhhcCCEEEEeEChhhcCCcccceEEEEeCH------HHHHHHHHHHhhhccCCCc-HHHHHHHHHHh
Confidence 112 3458899999998 577889999965 6888776554333333333 33333334554
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.8e-17 Score=156.28 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=144.5
Q ss_pred ccccccCCC--CCcHHHHHHHhhHhhcc--CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH
Q 016668 104 SLELIASEN--FTSRAVMEAVGSCLTNK--YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP 179 (385)
Q Consensus 104 ~l~Liasen--~~s~~V~~al~s~l~~~--y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~ 179 (385)
-++|-..++ .+++.|++++...+.+. ...+|+.. +. .+++ +++++++|++.+ ..+.+++|++
T Consensus 28 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~----~~---~~lr----~~la~~~g~~~~---~i~~t~g~~~ 93 (360)
T 3hdo_A 28 WIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA----SS---QKLR----EVAGELYGFDPS---WIIMANGSDE 93 (360)
T ss_dssp SEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS----SC---HHHH----HHHHHHHTCCGG---GEEEESSHHH
T ss_pred eeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC----ch---HHHH----HHHHHHhCcCcc---eEEEcCCHHH
Confidence 355554444 35899999998877542 02245432 11 2444 467888898764 2345566677
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~ 259 (385)
|+..++.++++|||+|++.++.|.++.. .+...|..+..++ +++ ++.+ ++++ +..++|+|++..
T Consensus 94 al~~~~~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~~~~v~--~~~-~~~~--~~l~---~~~~~~~v~i~~ 157 (360)
T 3hdo_A 94 VLNNLIRAFAAEGEEIGYVHPSYSYYGT--------LAEVQGARVRTFG--LTG-DFRI--AGFP---ERYEGKVFFLTT 157 (360)
T ss_dssp HHHHHHHHHCCTTCEEEEESSSCTHHHH--------HHHHHTCEEEEEC--BCT-TSSB--TTCC---SSBCSSEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEcCCChHHHHH--------HHHHCCCEEEEee--CCC-CCCH--HHHH---hhcCCCEEEEeC
Confidence 9999999999999999999987655321 2345566544444 542 2334 3333 233678888877
Q ss_pred CCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccC--ccccEEEEEEeCCCCch
Q 016668 260 SAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (385)
Q Consensus 260 s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~ 333 (385)
+++ |...|+++|.++|+++|+++++|++|.. +...+.. ...+ +.+++++|+||++ +|.|.|++++++
T Consensus 158 p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~-~~~~~~~-~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~----- 230 (360)
T 3hdo_A 158 PNAPLGPSFPLEYIDELARRCAGMLVLDETYAE-FAESNAL-ELVRRHENVVVTRTLSKSYSLAGMRIGLAIARP----- 230 (360)
T ss_dssp SCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGG-GSSCCCT-HHHHHCSSEEEEEESTTTTSCTTSCCEEEECCH-----
T ss_pred CCCCCCCCcCHHHHHHHHHHCCCEEEEECChHh-hCCcchh-HHhccCCCEEEEecchHhhcCCccceeeEeeCH-----
Confidence 765 4688999999999999999999999853 3211111 0011 3347899999996 678889999866
Q ss_pred hHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 334 VELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 334 ~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+.+.....+ .+++....++...+++
T Consensus 231 -~~~~~~~~~~~~---~~~~~~~~~a~~~~l~ 258 (360)
T 3hdo_A 231 -EVIAALDKIRDH---YNLDRLAQAACVAALR 258 (360)
T ss_dssp -HHHHHHHHHSCS---CCSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHhCCC---CCCCHHHHHHHHHHhc
Confidence 677777665433 2456666666666665
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-17 Score=160.57 Aligned_cols=175 Identities=20% Similarity=0.206 Sum_probs=126.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|...|+ +++...++|+ ++++++|.+. .+.++||++|+.+ +.++++|||+|++.++.|++.....
T Consensus 58 ~~~y~r~--~~p~~~~l~~----~la~l~g~~~-----~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~--- 122 (400)
T 3nmy_A 58 GFEYSRT--HNPTRFAYER----CVAALEGGTR-----AFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLF--- 122 (400)
T ss_dssp SCCBTTT--CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHH---
T ss_pred CcccccC--CCHHHHHHHH----HHHHHhCCCC-----EEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHH---
Confidence 4444444 6776667765 5788999874 4678899999987 5778999999999998776532110
Q ss_pred cccc-cccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccc
Q 016668 213 PKRR-VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHI 289 (385)
Q Consensus 213 ~~~~-~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~ 289 (385)
... ....|..+..++ . .|++++++.+++ ++++|++..+++| ...|+++|+++|+++|+++++|++|.
T Consensus 123 -~~~~~~~~g~~~~~v~--~------~d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~ 192 (400)
T 3nmy_A 123 -ERVRRRTAGLDFSFVD--L------TDPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFA 192 (400)
T ss_dssp -HHTHHHHHCCEEEEEC--T------TSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred -HHhhHhhcCeEEEEEC--C------CCHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc
Confidence 001 122355443333 2 289999999965 7899998877664 67899999999999999999999997
Q ss_pred ccccccCcccCCCC-CCcEEEECCCccCccc---cEE-EEEEeCCCCchhHHHHHHhh
Q 016668 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGG-MIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 290 ~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gp---rgG-~I~~~~~~~~~~~~~~~i~~ 342 (385)
.+.. ..+++ ++|+++.|+||+|.|| .|| +++.+++ ++.+++..
T Consensus 193 ~~~~-----~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~-----~~~~~l~~ 240 (400)
T 3nmy_A 193 SPML-----QRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNA-----ELAEQMAF 240 (400)
T ss_dssp HHHH-----CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCH-----HHHHHHHH
T ss_pred cccc-----CChhhcCCcEEEecCccccCCCCCcceeEEEEeCCH-----HHHHHHHH
Confidence 5543 23455 8999999999999876 567 6666654 56666543
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=159.02 Aligned_cols=197 Identities=13% Similarity=0.076 Sum_probs=124.3
Q ss_pred ccccccCCC--CCcHHHHHHHhhHhhccC----CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceeecC
Q 016668 104 SLELIASEN--FTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPL 175 (385)
Q Consensus 104 ~l~Liasen--~~s~~V~~al~s~l~~~y----~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg--~~~~~~~~~V~~~ 175 (385)
-|+|-..++ .+++.|++++...+.+.. ..+|+. ..|. .++++.+++++. +| ++.+ +|.++
T Consensus 71 ~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~---~~g~---~~lr~~ia~~~~--~g~~~~~~----~i~~t 138 (449)
T 3qgu_A 71 IISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGA---EQGQ---GALREAVASTFY--GHAGRAAD----EIFIS 138 (449)
T ss_dssp CEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTT---TTCC---HHHHHHHHHHHH--TTTTCCGG----GEEEE
T ss_pred EEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCC---CCCc---HHHHHHHHHHHH--cCCCCCHH----HEEEc
Confidence 355544333 468999999988776421 112322 1233 366665554444 44 3442 45555
Q ss_pred CcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcce----------EEEEeccccCC-CCCCCHHHH
Q 016668 176 SGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDES-TGLVDYDML 243 (385)
Q Consensus 176 sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~----------~~~i~~~~~~~-~~~iD~d~l 243 (385)
+|+ +++..+ .++++|||+|++.+|.|.++.. .+...|.. +..++ ++++ ....|++++
T Consensus 139 ~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 207 (449)
T 3qgu_A 139 DGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVD--------TSVMMGMTGDHNGTGFDGIEYMV--CNPDNHFFPDLSKA 207 (449)
T ss_dssp SCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHH--------HHHHHTCSCCBCSSSBTTEEEEE--CCGGGTTCCCGGGC
T ss_pred cCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHH--------HHHHcCCcccccccccceeEEEe--cccccCCcCChhHc
Confidence 555 577766 8889999999999987765532 22334443 44444 4433 334554321
Q ss_pred HHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---C---CCcEEEECC
Q 016668 244 EKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K---YCDVVTTTT 312 (385)
Q Consensus 244 e~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~---gaDiv~~S~ 312 (385)
.++|+|+++.++||+ ..+ +++|+++|+++|++||+|++|. ++..++..+.++ + +.++++.|+
T Consensus 208 ------~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 280 (449)
T 3qgu_A 208 ------KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYA-LYISNPDCPKTIYEIPGADEVAIETCSF 280 (449)
T ss_dssp ------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGCCCTTSCSSGGGSTTGGGTEEEEEEC
T ss_pred ------CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchH-hhhcCCCCCCCHhhccCCCCcEEEEecc
Confidence 368999888777763 443 7889999999999999999985 444443222222 1 345889999
Q ss_pred CccC--ccccEEEEEEeCCC
Q 016668 313 HKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 313 hK~l--~GprgG~I~~~~~~ 330 (385)
+|+| +|+|.|+++++++.
T Consensus 281 sK~~g~~G~r~G~~~~~~~~ 300 (449)
T 3qgu_A 281 SKYAGFTGVRLGWTVVPKAL 300 (449)
T ss_dssp SGGGTCTTCCCEEEECCTTC
T ss_pred hhhcCCccceeEEEecCHHH
Confidence 9997 57889999998864
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=162.16 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=133.5
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCC------CcceeecCCcHHHHHHHHHH
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTA 187 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~------~~~~V~~~sGs~A~~~a~~a 187 (385)
++..+.+++.+.+ +.+.. .|...+...++|+.+++|+++++|.+.+. .+..+++++||+||+.++.+
T Consensus 86 ~~~~~~~~~~~~~-n~~~~------~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~ 158 (486)
T 1js3_A 86 YPAMLADMLCGAI-GCIGF------SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLA 158 (486)
T ss_dssp HHHHHHHHHHHHH-CCCCS------SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CcCcc------ccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHH
Confidence 3445666666554 33221 13334566789999999999999998521 01246678888999998877
Q ss_pred hccC---------CC--------E--EeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhh
Q 016668 188 ILKP---------HD--------R--IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAI 248 (385)
Q Consensus 188 ll~p---------GD--------~--Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~ 248 (385)
+.++ || + |+++++.|. +.. +.+...|..+..++ ++ +++.+|+++|++.++
T Consensus 159 ~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~---s~~-----~~~~~~G~~v~~v~--~d-~~~~~d~~~L~~~i~ 227 (486)
T 1js3_A 159 ARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS---SVE-----RAGLIGGVKLKAIP--SD-GKFAMRASALQEALE 227 (486)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH---HHH-----HHHHHHTCEEEEEC--CC-TTSCCCHHHHHHHHH
T ss_pred HHHHHhhhhhccCccchhcccCCCEEEEECCCCcH---HHH-----HHHHhCCCceEEee--cC-CCCCCCHHHHHHHHH
Confidence 6421 43 4 666766443 211 23456677655555 55 468999999999996
Q ss_pred hcC-----CcEEEEcCCC--CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccC---CCCCCcEEEECCCccCcc
Q 016668 249 LFR-----PKLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLRG 318 (385)
Q Consensus 249 ~~~-----pklIi~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~---p~~gaDiv~~S~hK~l~G 318 (385)
+.+ |.+|++..++ +|...|+++|+++|+++|+++++|++|+.+......+.. .++++|++++++||++.+
T Consensus 228 ~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~ 307 (486)
T 1js3_A 228 RDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLV 307 (486)
T ss_dssp HHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSC
T ss_pred HHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCC
Confidence 532 2366665443 567789999999999999999999999765443221111 123789999999999977
Q ss_pred c-cEEEEEEeCC
Q 016668 319 P-RGGMIFFKKD 329 (385)
Q Consensus 319 p-rgG~I~~~~~ 329 (385)
| ++|+++++++
T Consensus 308 p~~~G~l~~~~~ 319 (486)
T 1js3_A 308 NFDCSAMWVKRR 319 (486)
T ss_dssp CSSCEEEEESCH
T ss_pred CcceEEEEEeCH
Confidence 6 5588998774
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=162.48 Aligned_cols=168 Identities=20% Similarity=0.233 Sum_probs=123.4
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
|++..++ +++++++++|.+. .+.+++|+.|+..++. +++|||+|++.++.|+++.... ...+...|
T Consensus 131 g~~~~~~----l~~~la~~~g~~~-----~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~----~~~~~~~G 196 (464)
T 1ibj_A 131 GNPTRDA----LESLLAKLDKADR-----AFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLL----SQVVPRSG 196 (464)
T ss_dssp CCHHHHH----HHHHHHHHHTCSE-----EEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHH----HHTSGGGT
T ss_pred CCHHHHH----HHHHHHHHhCCCe-----EEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHH----HHHHHHcC
Confidence 5554333 4568899999863 4667899999887775 8899999999998776542100 00123456
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+..++ . .|++++++.+++ ++|+|+++.+++| ...|+++|+++|+++|+++++|++|+.|.. .
T Consensus 197 ~~v~~v~--~------~d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~-----~ 262 (464)
T 1ibj_A 197 VVVKRVN--T------TKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL-----S 262 (464)
T ss_dssp CEEEEEC--T------TSHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT-----C
T ss_pred CEEEEeC--C------CCHHHHHHHhcc-CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 5444433 3 289999999864 7899999887764 678999999999999999999999976532 2
Q ss_pred CCCC-CCcEEEECCCccCccc---cEEEEEEeCCCCchhHHHHHHhh
Q 016668 300 DPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.+++ ++|++++|+||++.|| ++|+++++++ ++.+++..
T Consensus 263 ~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~-----~l~~~l~~ 304 (464)
T 1ibj_A 263 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----KLAKEVYF 304 (464)
T ss_dssp CGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSH-----HHHHHHHH
T ss_pred ChhhcCCEEEEECCcccccCCCCCcEEEEEEChH-----HHHHHHHH
Confidence 3444 7899999999999765 5699999864 56666654
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=158.30 Aligned_cols=190 Identities=19% Similarity=0.146 Sum_probs=129.5
Q ss_pred cccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHH
Q 016668 107 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (385)
Q Consensus 107 Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~ 186 (385)
+..+.++..+.+.++... +.+. ..|+...|+ +++..++++ +++++++|.+. .+.++||+.|+..++.
T Consensus 25 i~~~~~~~~~~~~~~~~~-~~~~-~~~~~y~~~--~~~~~~~l~----~~la~~~g~~~-----~v~~~sGt~A~~~~l~ 91 (421)
T 2ctz_A 25 IYPTTSYVFKSPEHAANL-FALK-EFGNIYSRI--MNPTVDVLE----KRLAALEGGKA-----ALATASGHAAQFLALT 91 (421)
T ss_dssp BCCCSCBCCSCHHHHHHH-HTTT-TGGGSCBTT--BCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHH
T ss_pred eeccceeeeCCHHHHHHh-hccc-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----eEEecCHHHHHHHHHH
Confidence 334555555554444321 1111 124444443 445455555 46888999874 4678899999999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEec-cccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--C
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY-RLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--P 263 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~-~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~ 263 (385)
+++++||+|++.++.|+++..... ......|..+ ..+ +.+ |++++++.+++ ++|+|++..+++ +
T Consensus 92 ~~~~~gd~vi~~~~~~~~~~~~~~----~~~~~~g~~~--~~~~~~~------d~~~l~~~i~~-~~~~v~~~~~~n~~G 158 (421)
T 2ctz_A 92 TLAQAGDNIVSTPNLYGGTFNQFK----VTLKRLGIEV--RFTSREE------RPEEFLALTDE-KTRAWWVESIGNPAL 158 (421)
T ss_dssp HHCCTTCEEEECSCCCHHHHHHHH----THHHHTTCEE--EECCTTC------CHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred HHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCCEE--EEECCCC------CHHHHHHhhcc-CCeEEEEECCCCCCC
Confidence 999999999999987765432100 0023456543 443 332 89999999965 789998877665 4
Q ss_pred CCCCHHHHHHHHHHcCcEEEEeccc-cccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEe
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAH-ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFK 327 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah-~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~ 327 (385)
...|+++|+++|+++|+++++|++| +.|.. ..++. ++|++++|+||+|.||. ||+++.+
T Consensus 159 ~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-----~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~ 222 (421)
T 2ctz_A 159 NIPDLEALAQAAREKGVALIVDNTFGMGGYL-----LRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDG 222 (421)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-----CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred cccCHHHHHHHHHHcCCEEEEECCccccccc-----CCccccCCeEEEECCcccccCCCCcEEEEEEec
Confidence 6789999999999999999999999 76632 13344 78999999999997754 4555553
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=155.27 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=133.3
Q ss_pred hccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHH
Q 016668 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (385)
Q Consensus 103 ~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~ 182 (385)
++--|..+.++..+.+++++... +. +..+...|+..+...+++ +++++++|.+. .+.+++|+.|+.
T Consensus 11 ~~~~l~~~~~p~~~~~~~~~~~~----~~-~~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~~a~~ 76 (357)
T 3lws_A 11 QTTGQISGHGKRNVGVLKTAFAA----VA-DEMASDQYGTGAIIEPFE----QKFADVLGMDD-----AVFFPSGTMAQQ 76 (357)
T ss_dssp TCSEESSBSSCCBHHHHHHHHTT----SC-TTCBCEETTEETTHHHHH----HHHHHHHTCSE-----EEEESCHHHHHH
T ss_pred hhcccccCCCCCCHHHHHHHHHH----hh-cccCcccccCChHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHH
Confidence 33345567777777777665432 11 111122343334444555 46888999865 466789999999
Q ss_pred HHHHHhccCCC--EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 183 EVYTAILKPHD--RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 183 ~a~~all~pGD--~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
.++.++++||| .|++.++.|....... ......|. +.++++. +++.+|++++++.. ++|+|+++.+
T Consensus 77 ~al~~~~~~gd~~~vi~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~--~~~~~d~~~l~~~~---~~~~v~~~~p 144 (357)
T 3lws_A 77 VALRIWSDETDNRTVAYHPLCHLEIHEQD-----GLKELHPI--ETILVGA--ADRLMTLDEIKALP---DIACLLLELP 144 (357)
T ss_dssp HHHHHHHHHHTCCEEEECTTCHHHHSSTT-----HHHHHSSC--EEEECSC--TTSCCCHHHHHTCC---SCSEEEEESS
T ss_pred HHHHHHhhcCCCcEEEecccceeeeeccc-----hhhhccCc--EEEEecC--CCCCcCHHHHhcCc---CcceEEEEcc
Confidence 99999999999 6666554332211100 01223454 3444332 45689999999873 3899988877
Q ss_pred CC---CCCC---CHHHHHHHHHHcCcEEEEecccccccc-ccCcccCCC-CCCcEEEECCCccCccccEEEEEEeCCCCc
Q 016668 261 AY---PRDF---DYPRMRQIADAVGALLMMDMAHISGLV-AASVVADPF-KYCDVVTTTTHKSLRGPRGGMIFFKKDPVL 332 (385)
Q Consensus 261 ~~---~~~~---dl~~I~~ia~~~ga~livD~ah~~Gli-~~g~~~~p~-~gaDiv~~S~hK~l~GprgG~I~~~~~~~~ 332 (385)
++ +... ++++|.++|+++|++|++|++|..+.. ..+.....+ .++|+++.|+||+|.||.||++++++
T Consensus 145 ~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~---- 220 (357)
T 3lws_A 145 QREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPA---- 220 (357)
T ss_dssp BGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECH----
T ss_pred cccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCH----
Confidence 65 4444 489999999999999999999863221 112111111 25788899999999899999988877
Q ss_pred hhHHHHHHh
Q 016668 333 GVELESAIN 341 (385)
Q Consensus 333 ~~~~~~~i~ 341 (385)
++.+++.
T Consensus 221 --~~~~~~~ 227 (357)
T 3lws_A 221 --AFCQTAR 227 (357)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHHH
Confidence 5666664
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=155.32 Aligned_cols=225 Identities=12% Similarity=0.016 Sum_probs=144.0
Q ss_pred CcHHHHHHHhhHhhcc---CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-
Q 016668 114 TSRAVMEAVGSCLTNK---YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~---y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all- 189 (385)
.++.++++....+.+. ...+|+. ..|.+ ++++.+++++.+.+|.+.+ ....+++++|+.|+..++.+++
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~---~~G~~---~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~ 179 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSH---SQGIH---GLRDAIASGIASRDGFPAN-ADDIFLTDGASPGVHLMMQLLIR 179 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCC---TTCCH---HHHHHHHHHHHHHHSSCCC-GGGEEEESSSHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCC---CcChH---HHHHHHHHHHHhhcCCCCC-cccEEEcCCHHHHHHHHHHHHcC
Confidence 4556666665555442 1223433 23444 6777778888888885421 1123555566779999999998
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhc-----CCcEEEEcCCCCC
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF-----RPKLIIAGASAYP 263 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~-----~pklIi~~~s~~~ 263 (385)
+|||+|++.+|.|.++.. .+...|..+. +++++++ ++.+|+++|++.+++. ++|+|++..++||
T Consensus 180 ~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~--~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NP 249 (500)
T 3tcm_A 180 NEKDGILVPIPQYPLYSA--------SIALHGGALV--PYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNP 249 (500)
T ss_dssp STTEEEEEEESCCTHHHH--------HHHHTTCEEE--EEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTT
T ss_pred CCCCEEEEeCCCcHhHHH--------HHHHcCCEEE--EEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCC
Confidence 899999999987765432 3445676444 4445544 4589999999998753 6788887777776
Q ss_pred C--CCC---HHHHHHHHHHcCcEEEEeccccccccccC-cccCC-------C---C-CCc-EEEECCCccC---ccccEE
Q 016668 264 R--DFD---YPRMRQIADAVGALLMMDMAHISGLVAAS-VVADP-------F---K-YCD-VVTTTTHKSL---RGPRGG 322 (385)
Q Consensus 264 ~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g-~~~~p-------~---~-gaD-iv~~S~hK~l---~GprgG 322 (385)
+ ..+ +++|+++|+++|+++++|++|.. +++.+ ....+ + . ..+ +++.|+||+| +|.|+|
T Consensus 250 tG~~~s~~~l~~i~~la~~~~~~li~Deay~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 328 (500)
T 3tcm_A 250 TGQVLAEENQYDIVKFCKNEGLVLLADEVYQE-NIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGG 328 (500)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCE
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEecCccc-cccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceE
Confidence 3 443 67788889999999999999854 33322 11111 1 1 222 5678999998 588999
Q ss_pred EEEE---eCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHH
Q 016668 323 MIFF---KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCL 364 (385)
Q Consensus 323 ~I~~---~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al 364 (385)
++++ ++ ++.+.+..... ...+++....++++.++
T Consensus 329 ~~~~~~~~~------~~~~~l~~~~~--~~~~~~~~~q~~~~~~l 365 (500)
T 3tcm_A 329 YFEITGFSA------PVREQIYKIAS--VNLCSNITGQILASLVM 365 (500)
T ss_dssp EEEEESCCT------THHHHHHHHHH--TTCCCCHHHHHHHHHHH
T ss_pred EEEEeCCCH------HHHHHHHHHHh--cccCCCHHHHHHHHHHh
Confidence 9988 44 46665544321 12334555555555554
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=158.12 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD 232 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~ 232 (385)
+++++++++|.+. .+.++||++|+..++. +++|||+|++.++.|++.... + . ..+...|..+..++ ++
T Consensus 60 lr~~la~~~g~~~-----~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~-~-~--~~~~~~G~~v~~v~--~~ 127 (393)
T 1n8p_A 60 LERAVAALENAQY-----GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRY-F-T--KVANAHGVETSFTN--DL 127 (393)
T ss_dssp HHHHHHHHTTCSE-----EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHH-H-H--HTSTTTCSCCEEES--SH
T ss_pred HHHHHHHHhCCCc-----EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHH-H-H--HHHHHcCcEEEEeC--CC
Confidence 3457889999873 5778899999999999 999999999999877543210 0 0 01234565444443 32
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHc----CcEEEEeccccccccccCcccCCCC-CC
Q 016668 233 ESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAV----GALLMMDMAHISGLVAASVVADPFK-YC 305 (385)
Q Consensus 233 ~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~----ga~livD~ah~~Gli~~g~~~~p~~-ga 305 (385)
| +++++.+++ ++|+|++..++++ ...|+++|.++|+++ |+++++|++|..+.. ..+++ ++
T Consensus 128 ------d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~-----~~~~~~~~ 194 (393)
T 1n8p_A 128 ------L-NDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI-----SNPLNFGA 194 (393)
T ss_dssp ------H-HHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH-----CCGGGGTC
T ss_pred ------h-HHHHHhccc-CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCcccccc-----CCHHHcCC
Confidence 7 889998864 6899998877654 678999999999999 999999999976543 13344 78
Q ss_pred cEEEECCCccCccc--c-EEEEEEeCCCCchhHHHHHHhhc
Q 016668 306 DVVTTTTHKSLRGP--R-GGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 306 Div~~S~hK~l~Gp--r-gG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
|++++|+||++.++ + ||+++++++ ++.+.+...
T Consensus 195 di~~~S~sK~~g~~G~rigG~~~~~~~-----~~~~~l~~~ 230 (393)
T 1n8p_A 195 DIVVHSATKYINGHSDVVLGVLATNNK-----PLYERLQFL 230 (393)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHHH
T ss_pred eEEEEECcccccCCCCceeEEEEeCCH-----HHHHHHHHH
Confidence 99999999988543 2 399888643 566666543
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=158.02 Aligned_cols=225 Identities=13% Similarity=0.133 Sum_probs=134.0
Q ss_pred hhhcccCCh-HHHHHHHHHHHHh---hh---ccccccCC--CCCcHHHHHHHhhHhhccCC-CCCCCCCCCCCcHHHHHH
Q 016668 80 DYSLGEADP-EVCEIITKEKERQ---FK---SLELIASE--NFTSRAVMEAVGSCLTNKYS-EGLPGKRYYGGNEYIDEL 149 (385)
Q Consensus 80 ~~~l~~~dp-~~~~~i~~e~~~~---~~---~l~Liase--n~~s~~V~~al~s~l~~~y~-~g~p~~r~~~G~~~~~~l 149 (385)
+.+++.+++ +.|..+.+..... .. -|+|-..+ ..+++.|++++...+.+... .++.+ |+......++
T Consensus 27 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~---y~~~~g~~~l 103 (432)
T 3ei9_A 27 NSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSG---YGAEQGAKPL 103 (432)
T ss_dssp CHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCC---CCCTTCCHHH
T ss_pred ChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccC---CCCCCCCHHH
Confidence 455666666 4555443322221 12 24444333 34689999999877653211 11111 1111112367
Q ss_pred HHHHHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc-------
Q 016668 150 ETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------- 221 (385)
Q Consensus 150 e~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------- 221 (385)
++.+++++.+.++++.+ +|.+++|+. ++. ++.++++|||+|++.+|.|.++.. .+...|
T Consensus 104 ~~~ia~~~~~~~~~~~~----~i~~t~G~~~al~-~l~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~~~~~~ 170 (432)
T 3ei9_A 104 RAAIAKTFYGGLGIGDD----DVFVSDGAKCDIS-RLQVMFGSNVTIAVQDPSYPAYVD--------SSVIMGQTGQFNT 170 (432)
T ss_dssp HHHHHHHHHTTTTCCGG----GEEEESCHHHHHH-HHHHHHCTTCCEEEEESCCTHHHH--------HHHHHTCSCCEET
T ss_pred HHHHHHHHHccCCCCcc----eEEECCChHHHHH-HHHHHcCCCCEEEEeCCCCHHHHH--------HHHHcCCcccccc
Confidence 77666666554576653 455666665 555 468889999999999998766532 111122
Q ss_pred -----ceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccc
Q 016668 222 -----IYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 222 -----~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~ 290 (385)
..+..++ ++.+ ....|+++ ..++|+|+++.++|| ..++ +++|+++|+++|++||+|++|.
T Consensus 171 ~~~~~~~~~~~~--~~~~~~~~~~l~~------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~- 241 (432)
T 3ei9_A 171 DVQKYGNIEYMR--CTPENGFFPDLST------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA- 241 (432)
T ss_dssp TTTEETTCEEEE--CCGGGTTSCCGGG------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-
T ss_pred cccccCceEEec--cCcccCCcCChhh------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchH-
Confidence 1233334 4322 23455432 236899888877776 3444 6778888999999999999985
Q ss_pred cccccCcccCC--CC---CCcEEEECCCccC--ccccEEEEEEeCC
Q 016668 291 GLVAASVVADP--FK---YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 291 Gli~~g~~~~p--~~---gaDiv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
+++.++..... +. +.++++.|+||+| +|.|.|+++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~ 287 (432)
T 3ei9_A 242 MYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKK 287 (432)
T ss_dssp GGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTT
T ss_pred hhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChH
Confidence 34333322111 11 2358899999997 7788899999886
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-16 Score=152.04 Aligned_cols=184 Identities=14% Similarity=0.074 Sum_probs=122.6
Q ss_pred HHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCC-CEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
++.+++++|++.+ +|.+++| ++|+..++.++++|| |+|++.+|.|.++.. .+...|..+. .+++
T Consensus 64 r~~la~~~~~~~~----~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~--------~~~~~g~~~~--~v~~ 129 (356)
T 1fg7_A 64 IENYAQYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSV--------SAETIGVECR--TVPT 129 (356)
T ss_dssp HHHHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHH--------HHHHHTCEEE--ECCC
T ss_pred HHHHHHHhCCChH----HEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHH--------HHHHcCCEEE--EeeC
Confidence 3467788898763 4555565 569999999999999 999999987765421 2334565444 4445
Q ss_pred cCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHH---HHHHHcCcEEEEeccccccccccCcccCCCC--C
Q 016668 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMR---QIADAVGALLMMDMAHISGLVAASVVADPFK--Y 304 (385)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~---~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--g 304 (385)
+ +++.+|++++++.++ ++|+|+++.++|| ...+.+++. ++|+ +|+++++|++|.. +.........++ +
T Consensus 130 ~-~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~-~~~~~~~~~~~~~~~ 204 (356)
T 1fg7_A 130 L-DNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIE-FCPQASLAGWLAEYP 204 (356)
T ss_dssp C-TTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGG-GSGGGCSGGGTTTCT
T ss_pred C-CCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchh-hcCCCcHHHHHhhCC
Confidence 4 346799999999885 7899988877765 466655554 5555 8999999999853 221111111112 3
Q ss_pred CcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 305 CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 305 aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
.++++.|+||++ +|+|.|++++++ ++.+.+.....+. +++....++...+|+
T Consensus 205 ~~i~~~s~sK~~g~~G~r~G~~~~~~------~~~~~l~~~~~~~---~~~~~~~~a~~~~l~ 258 (356)
T 1fg7_A 205 HLAILRTLSKAFALAGLRCGFTLANE------EVINLLMKVIAPY---PLSTPVADIAAQALS 258 (356)
T ss_dssp TEEEEEESSSTTCCGGGCCEEEEECH------HHHHHHHHHSCSS---CSCHHHHHHHHHHTS
T ss_pred CEEEEecchHhhcCchhhhEEEEeCH------HHHHHHHHhcCCC---CCCHHHHHHHHHHhc
Confidence 468899999997 678889999976 6777776543332 234444444444443
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=152.97 Aligned_cols=184 Identities=13% Similarity=0.022 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCC--------------EEeec-CCCCCccccCCccc
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD--------------RIMGL-DLPHGGHLSHGFMT 212 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD--------------~Vl~~-~~~~ggh~s~~~~~ 212 (385)
++++.+++++.+.+|.... ..-.+++++|++|+..++.++++||| +|+++ +|.|.+|.....
T Consensus 87 ~lr~~ia~~l~~~~g~~~~-~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~-- 163 (444)
T 3if2_A 87 AFIDALVGFFNRHYDWNLT-SENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHV-- 163 (444)
T ss_dssp HHHHHHHHHHHHHHCCCCC-GGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCS--
T ss_pred HHHHHHHHHHHhhcCCCCC-HHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccc--
Confidence 7787777788777775421 11234445566799999999999998 78776 777766533110
Q ss_pred cccccccCcceEEEEeccccCCC----CCCCHHHHHHHhh--hcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcE
Q 016668 213 PKRRVSGTSIYFESMPYRLDEST----GLVDYDMLEKTAI--LFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGAL 281 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~----~~iD~d~le~~i~--~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~ 281 (385)
........|. .++++++++++ +.+|+++|++.++ ..++++|++..++|| ...+ +++|.++|+++|++
T Consensus 164 ~~~~~~~~~~--~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~ 241 (444)
T 3if2_A 164 EGQHFAAVLP--HIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIP 241 (444)
T ss_dssp SSCCEEECCC--EEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred ccchhhccCc--eEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCE
Confidence 0001122343 44444455322 3689999998732 236788888766665 5667 88899999999999
Q ss_pred EEEecccccccc---ccCcccCCCCCCcEEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 282 LMMDMAHISGLV---AASVVADPFKYCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 282 livD~ah~~Gli---~~g~~~~p~~gaDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
||+|++|..++. ..+..+ ...+.+++++|+||++ +|.|.|+++.++ ++.+.+...
T Consensus 242 li~De~~~~~~~~~~~~~~~~-~~~~~~i~~~S~sK~~~~G~r~G~~~~~~------~l~~~~~~~ 300 (444)
T 3if2_A 242 LIIDNAYGMPFPNIIYSDAHL-NWDNNTILCFSLSKIGLPGMRTGIIVADA------KVIEAVSAM 300 (444)
T ss_dssp EEEECTTCTTTTCCBCSCCCC-CCCTTEEEEEESTTTTCGGGCCEEEECCH------HHHHHHHHH
T ss_pred EEEECCCCCcccccccccccc-cCCCCEEEEechhhccCCCCceEEEEECH------HHHHHHHHH
Confidence 999999854221 111111 1125568899999974 567889998876 566666543
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=159.48 Aligned_cols=198 Identities=14% Similarity=0.071 Sum_probs=134.1
Q ss_pred CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh---
Q 016668 112 NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--- 188 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--- 188 (385)
...++.+++++.....+... ..+...+...++|+.+++++++++|++..+ ..+++++||+||..++.++
T Consensus 110 ~~~~~~v~~~~~~~~~n~~~------~~~~~~~~~~~le~~~~~~la~~~g~~~~~--~~~~t~ggt~a~~~al~~ar~~ 181 (497)
T 2qma_A 110 PPLMPAVAAEAMIAALNQSM------DSWDQASSATYVEQKVVNWLCDKYDLSEKA--DGIFTSGGTQSNQMGLMLARDW 181 (497)
T ss_dssp CCBHHHHHHHHHHHHHCCCT------TCGGGCHHHHHHHHHHHHHHHHHTTCCTTC--EEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhcccc------cchhhChHHHHHHHHHHHHHHHHhCCCCCC--CeEEcCCchHHHHHHHHHHHHH
Confidence 45688888887665544311 113334567789999999999999996422 2456677888999888873
Q ss_pred -c---------cC------CC-EEeecCCCCCccccCCccccccccccCcc---eEEEEeccccCCCCCCCHHHHHHHhh
Q 016668 189 -L---------KP------HD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSI---YFESMPYRLDESTGLVDYDMLEKTAI 248 (385)
Q Consensus 189 -l---------~p------GD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~---~~~~i~~~~~~~~~~iD~d~le~~i~ 248 (385)
+ ++ || +|++.++.|.+.. +.+...|. .+..++ ++ +++.+|+++|++.++
T Consensus 182 ~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~--------~~~~~~g~g~~~v~~v~--~~-~~~~~d~~~L~~~i~ 250 (497)
T 2qma_A 182 IADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ--------KSASWMGLGEKAVMTVD--AN-ADGTMDITKLDEVIA 250 (497)
T ss_dssp HHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH--------HHHHHTTSCGGGEEEEC--BC-TTSSBCGGGHHHHHH
T ss_pred HHHhhcccchhhcccccccCCeEEEECCCchHHHH--------HHHHHcCCCcccEEEEe--cC-CCCcCCHHHHHHHHH
Confidence 3 13 46 7887766543321 12334443 445555 54 467899999999986
Q ss_pred hc---C--CcEEEEcCCC--CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccC---CCCCCcEEEECCCccCcc
Q 016668 249 LF---R--PKLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD---PFKYCDVVTTTTHKSLRG 318 (385)
Q Consensus 249 ~~---~--pklIi~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~---p~~gaDiv~~S~hK~l~G 318 (385)
+. . |.+|++..++ +|...|+++|+++|+++|+++++|++|+.+..... +.. .++++|++++|+||++.+
T Consensus 251 ~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~ 329 (497)
T 2qma_A 251 QAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQ 329 (497)
T ss_dssp HHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCC
T ss_pred HHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCC
Confidence 53 2 3366654333 46788999999999999999999999976544222 111 123679999999999988
Q ss_pred cc-EEEEEEeCC
Q 016668 319 PR-GGMIFFKKD 329 (385)
Q Consensus 319 pr-gG~I~~~~~ 329 (385)
|. .|+++++++
T Consensus 330 p~~~G~l~~~~~ 341 (497)
T 2qma_A 330 TISCGALLVNDK 341 (497)
T ss_dssp CSSCEEEEESCG
T ss_pred CcceEEEEEeCH
Confidence 75 488888765
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-18 Score=169.88 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=145.1
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceeecCC-cHHHHHHHHHHhc
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLS-GSPANFEVYTAIL 189 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg--~~~~~~~~~V~~~s-Gs~A~~~a~~all 189 (385)
.+++.+.+++...+.+ ...+|+. + ..++++.+++++.+.+| ++.+ +|.+++ |++|+..++.+++
T Consensus 44 ~~~~~v~~a~~~~~~~-~~~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~----~v~~~~g~~~a~~~~~~~~~ 110 (392)
T 3b1d_A 44 EVMPEVKQAIHDYAEQ-LVYGYTY-----A---SDELLQAVLDWEKSEHQYSFDKE----DIVFVEGVVPAISIAIQAFT 110 (392)
Confidence 4578899988776643 1223332 1 34677777788888888 4442 344444 5679999999999
Q ss_pred cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC--CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CC
Q 016668 190 KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES--TGLVDYDMLEKTAILFRPKLIIAGASAYP--RD 265 (385)
Q Consensus 190 ~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~--~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~ 265 (385)
+|||+|++.+|.|.++.. .+...|..+. .++.+++ ++.+|++++++.++..++++|++..+++| ..
T Consensus 111 ~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~--~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 180 (392)
T 3b1d_A 111 KEGEAVLINSPVYPPFAR--------SVRLNNRKLV--SNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRV 180 (392)
Confidence 999999999887655421 2334455433 3334322 24589999999886447888888766665 23
Q ss_pred C---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC-C------CCcEEEECCCccC--ccccEEEEEEeCCCCch
Q 016668 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K------YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (385)
Q Consensus 266 ~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~-~------gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~ 333 (385)
. ++++|+++|+++|++||+|++|. ++...+..+.++ . +.++++.|++|+| +|+|.|+++++++
T Consensus 181 ~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~---- 255 (392)
T 3b1d_A 181 WEREVLEQIGHLCQKHHVILVSDEIHQ-DLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENP---- 255 (392)
Confidence 3 58999999999999999999984 444333211112 1 2237899999997 6778899998764
Q ss_pred hHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 334 VELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 334 ~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+.+.....+...++++....++...+|+
T Consensus 256 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 286 (392)
T 3b1d_A 256 -TLCAQFKHQQLVNNHHEVSSLGYIATETAYR 286 (392)
Confidence 4666665544333223344444444444554
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-16 Score=150.04 Aligned_cols=222 Identities=14% Similarity=0.075 Sum_probs=138.7
Q ss_pred ccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHH
Q 016668 104 SLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181 (385)
Q Consensus 104 ~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~ 181 (385)
-+++...++. +++.+.+++...+.. ..+|+. .|. .+++ +.+++++|++.+ ..+.+++|++|+
T Consensus 26 ~idl~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~----~~~---~~l~----~~la~~~~~~~~---~v~~~~g~~~al 89 (364)
T 1lc5_A 26 LLDFSANINPLGMPVSVKRALIDNLDC--IERYPD----ADY---FHLH----QALARHHQVPAS---WILAGNGETESI 89 (364)
T ss_dssp SEECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCC----TTC---HHHH----HHHHHHHTSCGG---GEEEESSHHHHH
T ss_pred eEEeccccCCCCCCHHHHHHHHHHHHH--hhcCCC----CCH---HHHH----HHHHHHHCcCHH---HEEECCCHHHHH
Confidence 3556555443 689999998877643 223433 122 2444 457788898753 134444556799
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCC-HHHHHHHhhhcCCcEEEEcCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD-YDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD-~d~le~~i~~~~pklIi~~~s 260 (385)
..++.++ +||+|++.+|.|.++.. .+...|..+..++ ++++++ ++ ++++.+.+. .++|+|++..+
T Consensus 90 ~~~~~~~--~gd~vl~~~p~y~~~~~--------~~~~~g~~~~~v~--~~~~~~-~~~l~~~~~~~~-~~~~~v~i~~p 155 (364)
T 1lc5_A 90 FTVASGL--KPRRAMIVTPGFAEYGR--------ALAQSGCEIRRWS--LREADG-WQLTDAILEALT-PDLDCLFLCTP 155 (364)
T ss_dssp HHHHHHH--CCSEEEEEESCCTHHHH--------HHHHTTCEEEEEE--CCGGGT-TCCCTTHHHHCC-TTCCEEEEESS
T ss_pred HHHHHHc--CCCeEEEeCCCcHHHHH--------HHHHcCCeEEEEe--CCcccc-cchhHHHHHhcc-CCCCEEEEeCC
Confidence 9888888 78999999887654321 2345566555444 432112 33 455555553 36888887766
Q ss_pred CCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcc-cCCCC--CCcEEEECCCccC--ccccEEEEE-EeCC
Q 016668 261 AYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPFK--YCDVVTTTTHKSL--RGPRGGMIF-FKKD 329 (385)
Q Consensus 261 ~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~p~~--gaDiv~~S~hK~l--~GprgG~I~-~~~~ 329 (385)
++| ...+ +++|.++|+++|+++++|++|.. +...+.. ...++ +.|+++.|+||++ +|.|.|+++ .++
T Consensus 156 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~- 233 (364)
T 1lc5_A 156 NNPTGLLPERPLLQAIADRCKSLNINLILDEAFID-FIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD- 233 (364)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG-GSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH-
T ss_pred CCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChh-hccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCH-
Confidence 665 5566 89999999999999999999853 3322211 11112 4578999999998 567889998 666
Q ss_pred CCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 330 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 330 ~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++.+.+.....+. +++....++...+++
T Consensus 234 -----~~~~~l~~~~~~~---~~~~~~~~~~~~~l~ 261 (364)
T 1lc5_A 234 -----AAMARMRRQQMPW---SVNALAALAGEVALQ 261 (364)
T ss_dssp -----HHHHHHHHHSCTT---CSCHHHHHHHHHGGG
T ss_pred -----HHHHHHHHhCCCC---CCCHHHHHHHHHHHh
Confidence 6777776544322 344444544444443
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=150.60 Aligned_cols=160 Identities=19% Similarity=0.229 Sum_probs=114.5
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
+++..++++ +++++++|.+. .+.+.||++|+..++.++++|||+|+++++.|++.... + ...+...|
T Consensus 54 ~~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~-~---~~~~~~~g 120 (412)
T 2cb1_A 54 KDPTAKALE----ERLKALEGALE-----AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGL-F---GQVLSLMG 120 (412)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHH-H---HHTTTTTT
T ss_pred CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHH-H---HHHHHHcC
Confidence 345444444 57889999874 46678899999999999999999999999877543210 0 00123456
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCccc
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~ 299 (385)
..+..++ +|++++++.+++ ++++|+++.+++ +...|+++|+++|+++|+++++|++|..+-. ..
T Consensus 121 ~~~~~~~---------~~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~----~~ 186 (412)
T 2cb1_A 121 VTVRYVD---------PEPEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGA----LC 186 (412)
T ss_dssp CEEEEEC---------SSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTT----SC
T ss_pred CEEEEEC---------CCHHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccc----cC
Confidence 5443332 248999999865 789998877665 4678999999999999999999999965511 12
Q ss_pred CCCC-CCcEEEECCCccCcccc---EEEEEEeC
Q 016668 300 DPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (385)
Q Consensus 300 ~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~ 328 (385)
.+++ ++|++++|+||++.||. ||+++.++
T Consensus 187 ~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~ 219 (412)
T 2cb1_A 187 RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRE 219 (412)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECC
T ss_pred CccccCCeEEEECCcccccCCCCcEEEEEEecc
Confidence 3344 78999999999997763 34444443
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=154.84 Aligned_cols=228 Identities=15% Similarity=0.160 Sum_probs=137.0
Q ss_pred CCcHHHHHHHhh-HhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceee--cCCcHHHHHHH--H
Q 016668 113 FTSRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQ--PLSGSPANFEV--Y 185 (385)
Q Consensus 113 ~~s~~V~~al~s-~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~--~~~~~~~~V~--~~sGs~A~~~a--~ 185 (385)
++++.|.+++.. .+......+|.. ..|.+ ++++.+.+++...+|. +.++ .+. +.+|+.|+..+ +
T Consensus 47 ~~~~~v~~a~~~~~~~~~~~~~y~~---~~g~~---~lr~~ia~~~~~~~~~~~~~~~---i~~~~t~g~~~a~~~~~~~ 117 (412)
T 1yaa_A 47 WVLPSVKAAEKLIHNDSSYNHEYLG---ITGLP---SLTSNAAKIIFGTQSDALQEDR---VISVQSLSGTGALHISAKF 117 (412)
T ss_dssp CCCHHHHHHHHHHHTCTTCCCCCCC---TTCCH---HHHHHHHHHHHCTTCHHHHTTC---EEEEEEEHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhhcCcccccCCCC---CCCcH---HHHHHHHHHHhcCCCCCCCcce---EEEEeccchHhHHHHHHHH
Confidence 578999999987 654222223422 12333 6666555555443442 3321 233 55667788887 3
Q ss_pred HHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcC-Cc-EEEEcCCCCC
Q 016668 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-PK-LIIAGASAYP 263 (385)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~-pk-lIi~~~s~~~ 263 (385)
..+++|||+|++.+|.|.++.. .+...|..+..++.. +++++.+|++++++.+++.+ ++ ++++..++||
T Consensus 118 ~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nP 188 (412)
T 1yaa_A 118 FSKFFPDKLVYLSKPTWANHMA--------IFENQGLKTATYPYW-ANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNP 188 (412)
T ss_dssp HHHHCTTCCEEEEESCCTTHHH--------HHHTTTCCEEEEECE-ETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTT
T ss_pred HHHhCCCCEEEEeCCCCccHHH--------HHHHcCceEEEEeee-cCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 4556899999999987765421 234556655555531 33356799999999987643 24 4454777765
Q ss_pred --CCC---CHHHHHHHHHHcCcEEEEeccccccccccC---cc-c-CCCC--CC----cEEEECCCccCc--cccEEEEE
Q 016668 264 --RDF---DYPRMRQIADAVGALLMMDMAHISGLVAAS---VV-A-DPFK--YC----DVVTTTTHKSLR--GPRGGMIF 325 (385)
Q Consensus 264 --~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g---~~-~-~p~~--ga----Div~~S~hK~l~--GprgG~I~ 325 (385)
... ++++|.++|+++|+++|+|++|. ++..++ .. + ..+. +. ++++.|+||++. |.|.|+++
T Consensus 189 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~ 267 (412)
T 1yaa_A 189 TGLDPTSEQWVQIVDAIASKNHIALFDTAYQ-GFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFH 267 (412)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEE
Confidence 344 36788999999999999999973 444332 11 1 0111 33 478999999983 67779988
Q ss_pred --E-----eCCCCchhH----HHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 326 --F-----KKDPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 326 --~-----~~~~~~~~~----~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
+ ++ + +.+.+........ ++++....++...+++.
T Consensus 268 ~~~~~~~~~~------~~~~~l~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~ 312 (412)
T 1yaa_A 268 LALTKQAQNK------TIKPAVTSQLAKIIRSEV-SNPPAYGAKIVAKLLET 312 (412)
T ss_dssp EECCSCTTHH------HHHHHHHHHHHHHHHTTT-SSCCHHHHHHHHHHHHS
T ss_pred EEecCCCCCH------HHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHhCC
Confidence 6 33 4 6666655322222 23344444455555543
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=152.36 Aligned_cols=227 Identities=16% Similarity=0.189 Sum_probs=146.8
Q ss_pred hhcccCChH-HHHHHHHHHHHhh-hccccccCC-------CCCcHHHHHHHhhHh-hccCCCCCCCCCCCCCcHHHHHHH
Q 016668 81 YSLGEADPE-VCEIITKEKERQF-KSLELIASE-------NFTSRAVMEAVGSCL-TNKYSEGLPGKRYYGGNEYIDELE 150 (385)
Q Consensus 81 ~~l~~~dp~-~~~~i~~e~~~~~-~~l~Liase-------n~~s~~V~~al~s~l-~~~y~~g~p~~r~~~G~~~~~~le 150 (385)
.++..++|. ++.+.++.+...+ .-|+|--++ .++++.|.+++. .+ ......+|+. ..|.+ +++
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~---~~G~~---~lr 78 (405)
T 3k7y_A 6 SSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLL---GNGTE---DFS 78 (405)
T ss_dssp GGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCT---TSSCH---HHH
T ss_pred hcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCC---CCCcH---HHH
Confidence 467777775 6776665444333 446665332 346889999876 33 2223334554 34665 777
Q ss_pred HHHHHHHHHHcCCCC-CCCcce-eecCCcHHHHHHHHHHhcc--CCCEEeecCCCCCccccCCccccccccccCcceEEE
Q 016668 151 TLCQKRALAAFNLDE-NKWGVN-VQPLSGSPANFEVYTAILK--PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (385)
Q Consensus 151 ~~~~~~la~lfg~~~-~~~~~~-V~~~sGs~A~~~a~~all~--pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (385)
+.+.+++.+..+... .++ ++ +++.+|+.|+..++.++++ | |+|++.+|.+.+|.. .+...|..+..
T Consensus 79 ~aia~~~~~~~~~~~~~~~-i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~--------~~~~~g~~~~~ 148 (405)
T 3k7y_A 79 TLTQNLIFGNNSKYIEDKK-ICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVN--------MIESRGFNLKY 148 (405)
T ss_dssp HHHHHHHHCSSCTTTTTTC-EEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHH--------HHHTTTCEEEE
T ss_pred HHHHHHHcCCCCccccccc-eEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHH--------HHHHcCCeEEE
Confidence 777777654444321 112 22 4455556799999988877 9 999999998766532 34567775554
Q ss_pred EeccccCCCCCCCHHHHHHHhhhc-CCcEEEEcCC-CCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcc-
Q 016668 227 MPYRLDESTGLVDYDMLEKTAILF-RPKLIIAGAS-AYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV- 298 (385)
Q Consensus 227 i~~~~~~~~~~iD~d~le~~i~~~-~pklIi~~~s-~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~- 298 (385)
+++. +++++.+|++++++.+++. ++++|+++++ +||+ .++ +++|.++|+++|+++++|++| .++..++..
T Consensus 149 v~~~-~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y-~~l~~~~~~~ 226 (405)
T 3k7y_A 149 INFF-DYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAY-QGFGHTNLEE 226 (405)
T ss_dssp ECCE-ETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESC-TTTSSSSTTG
T ss_pred Eecc-ccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCc-ccccCCCccc
Confidence 5431 3345789999999998653 4578888765 6773 443 678889999999999999996 566543210
Q ss_pred --c--CCC-C-CCc-EEEECCCccC--ccccEEEEEE
Q 016668 299 --A--DPF-K-YCD-VVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 299 --~--~p~-~-gaD-iv~~S~hK~l--~GprgG~I~~ 326 (385)
+ ..+ + +.. +++.|++|+| +|+|.|++++
T Consensus 227 ~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~ 263 (405)
T 3k7y_A 227 DVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHI 263 (405)
T ss_dssp GGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEE
T ss_pred chHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEE
Confidence 0 011 2 223 6789999997 6999999865
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=150.31 Aligned_cols=227 Identities=15% Similarity=0.174 Sum_probs=138.7
Q ss_pred cccCCh-HHHHHHHHHHHHhh-hccccccCC---C----CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHH
Q 016668 83 LGEADP-EVCEIITKEKERQF-KSLELIASE---N----FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLC 153 (385)
Q Consensus 83 l~~~dp-~~~~~i~~e~~~~~-~~l~Liase---n----~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~ 153 (385)
+...++ .++.+.+..+.... .-++|-..+ + ...+.+.+++...+.+....+|+. ..|.+ ++++.+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~g~~---~lr~~i 80 (401)
T 7aat_A 7 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP---IAGLA---DFTRAS 80 (401)
T ss_dssp CCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC---TTCCH---HHHHHH
T ss_pred CCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCC---CCCCH---HHHHHH
Confidence 444555 35555544333222 235554222 2 224578888776654333334543 23444 666655
Q ss_pred HHHHHHHcCCC--CCCCcce-eecCCcHHHHHHHHHHhc---cCCCEEeecCCCCCccccCCccccccccccCcceEEEE
Q 016668 154 QKRALAAFNLD--ENKWGVN-VQPLSGSPANFEVYTAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM 227 (385)
Q Consensus 154 ~~~la~lfg~~--~~~~~~~-V~~~sGs~A~~~a~~all---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i 227 (385)
++++.+.+|.+ .++ +. |++.+|++|+..++.++. +|||+|++.+|.|.+|.. .+...|..+..+
T Consensus 81 a~~~~~~~~~~~~~~~--i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~g~~~~~~ 150 (401)
T 7aat_A 81 AELALGENSEAFKSGR--YVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP--------IFRDAGLQLQAY 150 (401)
T ss_dssp HHHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH--------HHHHTTCEEEEE
T ss_pred HHHhcCCCccccccCc--eEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHH--------HHHHcCCeeEee
Confidence 55555544532 321 11 125566779998876664 999999999987765532 344567655555
Q ss_pred eccccCCCCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCc---
Q 016668 228 PYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV--- 297 (385)
Q Consensus 228 ~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~--- 297 (385)
++. +++++.+|++++++.++. .++++|+++.++||+ .. ++++|.++|+++|+++++|++| .++...+.
T Consensus 151 ~~~-~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay-~~~~~~~~~~~ 228 (401)
T 7aat_A 151 RYY-DPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAY-QGFASGDINRD 228 (401)
T ss_dssp ECE-ETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC-TTTTTSCHHHH
T ss_pred eee-ccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEcccc-ccccCCCcccc
Confidence 532 223578999988877754 256788888888764 33 4788999999999999999997 44443321
Q ss_pred ccC--CC-C--CCcEEEECCCccC--ccccEEEEEEe
Q 016668 298 VAD--PF-K--YCDVVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 298 ~~~--p~-~--gaDiv~~S~hK~l--~GprgG~I~~~ 327 (385)
..+ .+ + .-.+++.|+||++ +|+|.|+++..
T Consensus 229 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~ 265 (401)
T 7aat_A 229 AWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVI 265 (401)
T ss_dssp THHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEE
T ss_pred HHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEE
Confidence 000 01 1 2347899999997 68888998873
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=148.53 Aligned_cols=195 Identities=18% Similarity=0.159 Sum_probs=123.7
Q ss_pred cHHHHHHHhh-HhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcce-eecCCcHHHHHHHH--HHh
Q 016668 115 SRAVMEAVGS-CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVN-VQPLSGSPANFEVY--TAI 188 (385)
Q Consensus 115 s~~V~~al~s-~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~--~~~~~~~~-V~~~sGs~A~~~a~--~al 188 (385)
++.|++++.. .+.+....+|+. ..|.+ ++++..++++....+. +.+. ++ +.+.+|++|+..++ .++
T Consensus 46 ~~~v~~a~~~~~~~~~~~~~y~~---~~g~~---~lr~~la~~~~~~~~~~~~~~~--~~i~~t~g~~~a~~~~~~~~~~ 117 (397)
T 3fsl_A 46 LQAVAEAEARLNAQPHGASLYLP---MEGLN---CYRHAIAPLLFGADHPVLKQQR--VATIQTLGGSGALKVGADFLKR 117 (397)
T ss_dssp CHHHHHHHHHHHHSCCCCCCCCC---TTCCH---HHHHHHHHHHHCTTCHHHHTTC--EEEEEESHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhccCccccccCCC---CCchH---HHHHHHHHHHhcCCcccccccc--eEEEEcCCcHHHHHHHHHHHHh
Confidence 4899999987 665433334543 22443 5555444444333221 2210 13 34455567998884 567
Q ss_pred ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCC--C
Q 016668 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYP--R 264 (385)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~~--~ 264 (385)
++|||+|++.+|.|.++.. .+...|..+..+++. +++++.+|++++++.+++. ++++++++.++|| .
T Consensus 118 ~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~ 188 (397)
T 3fsl_A 118 YFPESGVWVSDPTWENHVA--------IFAGAGFEVSTYPWY-DEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGA 188 (397)
T ss_dssp HCTTCCEEEESSCCHHHHH--------HHHHTTCCEEEECCE-ETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCC
T ss_pred cCCCCeEEEeCCCchhHHH--------HHHHcCCceEEEeee-eccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCc
Confidence 8999999999987655421 334567655555532 2245789999999999742 4567777777765 3
Q ss_pred CC---CHHHHHHHHHHcCcEEEEeccccccccccC--cccC--CC-C--CCcEEEECCCccC--ccccEEEEEEe
Q 016668 265 DF---DYPRMRQIADAVGALLMMDMAHISGLVAAS--VVAD--PF-K--YCDVVTTTTHKSL--RGPRGGMIFFK 327 (385)
Q Consensus 265 ~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g--~~~~--p~-~--gaDiv~~S~hK~l--~GprgG~I~~~ 327 (385)
.. ++++|+++|+++|+++++|++| .++..++ ..+. .+ + ...+++.|++|++ +|.|.|+++..
T Consensus 189 ~~~~~~l~~l~~~~~~~~~~li~De~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~ 262 (397)
T 3fsl_A 189 DLTNDQWDAVIEILKARELIPFLDIAY-QGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVM 262 (397)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEESC-TTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCEEEEEecCc-hhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEe
Confidence 43 4668999999999999999998 4444331 1111 11 1 2347889999997 47888998763
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-16 Score=149.37 Aligned_cols=220 Identities=15% Similarity=0.126 Sum_probs=143.3
Q ss_pred hccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHH
Q 016668 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPA 180 (385)
Q Consensus 103 ~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A 180 (385)
.-+++-.++|+ +++.|.+++...+... .+||.. +. .++ ++++++++|++.+ ..+.+++|++|
T Consensus 27 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~----~~---~~l----~~~la~~~~~~~~---~i~~~~g~t~a 90 (361)
T 3ftb_A 27 ELLDYSSNINPLGIPKSFLNNIDEGIKNL--GVYPDV----NY---RRL----NKSIENYLKLKDI---GIVLGNGASEI 90 (361)
T ss_dssp -CEETTCCCCTTCSCHHHHTTHHHHHHGG--GSCCCT----TC---HHH----HHHHHHHHTCCSC---EEEEESSHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHHh--cCCCCc----cH---HHH----HHHHHHHhCCCcc---eEEEcCCHHHH
Confidence 34666655554 5899999998776542 245431 21 244 4567888898764 13444556679
Q ss_pred HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 181 NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 181 ~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
+..++.++ |+|++.++.|.++.. .+...|..+..++ +++ ++.+|++++++.+++ +|+|++..+
T Consensus 91 l~~~~~~~----d~vi~~~~~~~~~~~--------~~~~~g~~~~~~~--~~~-~~~~~~~~l~~~l~~--~~~v~i~~p 153 (361)
T 3ftb_A 91 IELSISLF----EKILIIVPSYAEYEI--------NAKKHGVSVVFSY--LDE-NMCIDYEDIISKIDD--VDSVIIGNP 153 (361)
T ss_dssp HHHHHTTC----SEEEEEESCCTHHHH--------HHHHTTCEEEEEE--CCT-TSCCCHHHHHHHTTT--CSEEEEETT
T ss_pred HHHHHHHc----CcEEEecCChHHHHH--------HHHHcCCeEEEee--cCc-ccCCCHHHHHHhccC--CCEEEEeCC
Confidence 98888877 999999886654321 3345576555444 542 356888999999865 899988777
Q ss_pred CCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC---C--CCcEEEECCCccC--ccccEEEEEEeC
Q 016668 261 AYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K--YCDVVTTTTHKSL--RGPRGGMIFFKK 328 (385)
Q Consensus 261 ~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~--gaDiv~~S~hK~l--~GprgG~I~~~~ 328 (385)
++| ...+ +++|+++|+++|+++++|++|. ++... .....+ . ...++++|+||++ +|.+.|++++.+
T Consensus 154 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~ 231 (361)
T 3ftb_A 154 NNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFI-EFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNN 231 (361)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSG-GGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESC
T ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcch-hhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCC
Confidence 765 3444 7778888889999999999984 33332 111221 1 2237789999997 567889988444
Q ss_pred CCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 329 DPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
+ ++.+.+.....+. +++....+++..+++
T Consensus 232 ~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 260 (361)
T 3ftb_A 232 K-----EIAAKIKAKQNPW---NINCFAEMAAINCLK 260 (361)
T ss_dssp H-----HHHHHHHTTSCTT---CSCHHHHHHHHHTSS
T ss_pred H-----HHHHHHHhhCCCC---CCCHHHHHHHHHHhc
Confidence 3 7888776654332 455566666555554
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-16 Score=155.35 Aligned_cols=240 Identities=15% Similarity=0.095 Sum_probs=147.3
Q ss_pred hccccccCCC--C-CcHHH--HHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHc-CCCCCCCcceeecCC
Q 016668 103 KSLELIASEN--F-TSRAV--MEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLS 176 (385)
Q Consensus 103 ~~l~Liasen--~-~s~~V--~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lf-g~~~~~~~~~V~~~s 176 (385)
.-+++-.+++ + .++.+ ++++...+......+|+. ..|.+ ++++.+++++.+.+ +++.+++...+++.+
T Consensus 48 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~---~~g~~---~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g 121 (430)
T 2x5f_A 48 TTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAP---PQGIE---ELRDLWQQKMLRDNPELSIDNMSRPIVTNA 121 (430)
T ss_dssp CSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCC---TTCCH---HHHHHHHHHHHHHCTTCCGGGBCCCEEESH
T ss_pred CcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCC---CCCCH---HHHHHHHHHHhccCcccCCCccceEEEcCC
Confidence 3456654444 1 35555 666655443211224443 12333 66665555554443 555431000234445
Q ss_pred cHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccccccccc-CcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCc
Q 016668 177 GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSG-TSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPK 253 (385)
Q Consensus 177 Gs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~-~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pk 253 (385)
|++|+..++.++++|||+|++.+|.|.++.. .+.. .|..+. .++++++++.+|++++++.++.. +++
T Consensus 122 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~~g~~~~--~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 191 (430)
T 2x5f_A 122 LTHGLSLVGDLFVNQDDTILLPEHNWGNYKL--------VFNTRNGANLQ--TYPIFDKDGHYTTDSLVEALQSYNKDKV 191 (430)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHTTTTCCEEE--EECCBCTTSCBCSHHHHHHHHHCCSSEE
T ss_pred chHHHHHHHHHHhCCCCEEEEcCCcCccHHH--------HHHHhcCCeEE--EEeccCccCCcCHHHHHHHHHhcCCCCE
Confidence 5679999999999999999999987765421 2334 566444 44455433679999999998652 578
Q ss_pred EEEEcCCCCC--CCCC---HHHHHHHHHH-----cCcEEEEeccccccccccCc-ccC---CC---CCC---cEEEECCC
Q 016668 254 LIIAGASAYP--RDFD---YPRMRQIADA-----VGALLMMDMAHISGLVAASV-VAD---PF---KYC---DVVTTTTH 313 (385)
Q Consensus 254 lIi~~~s~~~--~~~d---l~~I~~ia~~-----~ga~livD~ah~~Gli~~g~-~~~---p~---~ga---Div~~S~h 313 (385)
+|++..++|| ...+ +++|.++|++ +|+++|+|++|. ++...+. ++. .+ ... +++++|+|
T Consensus 192 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 270 (430)
T 2x5f_A 192 IMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYY-GLFYEDVYTQSLFTALTNLHSNAILPIRLDGAT 270 (430)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTT-TCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHH
T ss_pred EEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcc-cccCCcccchHHHHHHhhccCCcceEEEEEecc
Confidence 8888777765 4566 8899999999 999999999985 3433332 112 12 133 57799999
Q ss_pred ccC--ccccEEEEEE---eCCCCchhHHHHHHhhccCC---CccCCChHHHHHHHHHHHH
Q 016668 314 KSL--RGPRGGMIFF---KKDPVLGVELESAINNAVFP---GLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 314 K~l--~GprgG~I~~---~~~~~~~~~~~~~i~~~~fp---~~qg~p~~~~iaala~Al~ 365 (385)
|+| +|.|.|++++ ++ ++.+.+...... ....+++....+++..+++
T Consensus 271 K~~~~~G~riG~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 324 (430)
T 2x5f_A 271 KEFFAWGFRVGFMTFGTSDQ------TTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLK 324 (430)
T ss_dssp HHTTCGGGCCEEEEEBCCCH------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCeEEEEEecCCH------HHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHc
Confidence 998 5677899999 65 566666543221 0122345555556566665
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=148.98 Aligned_cols=218 Identities=18% Similarity=0.149 Sum_probs=138.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
.+|.+.+++...+.... +.+.. + ..+... ..++++++++|.+. .+.+++|++|+..++.+++.
T Consensus 56 ~~p~v~~a~~~~~~~~~---~~~~~-~-~~~~~~----~l~~~la~~~~~~~-----v~~~~gg~~a~~~al~~~~~~~~ 121 (406)
T 4adb_A 56 AHPELREALNEQASKFW---HTGNG-Y-TNEPVL----RLAKKLIDATFADR-----VFFCNSGAEANEAALKLARKFAH 121 (406)
T ss_dssp TCHHHHHHHHHHHTTCS---CCCTT-S-CCHHHH----HHHHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc---cccCC-c-CCHHHH----HHHHHHHhhCCCCe-----EEEeCcHHHHHHHHHHHHHHHHH
Confidence 47899999987765421 11111 2 233333 34567889998763 46677888999999998865
Q ss_pred ----CC-CEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCCCCCCCHHHHHHHhhhcCCc
Q 016668 191 ----PH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDESTGLVDYDMLEKTAILFRPK 253 (385)
Q Consensus 191 ----pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pk 253 (385)
+| |+|++.++.+.++... .....+ ..+..++ ..|+++|++.++. +++
T Consensus 122 ~~~~~g~~~vi~~~~~y~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~l~~~l~~-~~~ 185 (406)
T 4adb_A 122 DRYGSHKSGIVAFKNAFHGRTLF-------TVSAGGQPAYSQDFAPLPADIRHAA--------YNDINSASALIDD-STC 185 (406)
T ss_dssp HHTCTTCCEEEEETTCCCCSSHH-------HHHHSSCGGGTGGGCSCCSSEEEEC--------TTCHHHHHTTCST-TEE
T ss_pred hcCCCCCcEEEEECCCcCCCcHH-------HhhccCCccccccCCCCCCCceEeC--------CCcHHHHHHHhcC-CeE
Confidence 66 9999998876443210 011111 1112221 2489999998864 789
Q ss_pred EEEEcCCCCCC-------CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccEE
Q 016668 254 LIIAGASAYPR-------DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRGG 322 (385)
Q Consensus 254 lIi~~~s~~~~-------~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~GprgG 322 (385)
+|+++ +++|. ..++++|.++|+++|++||+|++|. |+...|... ..++ ..|+++ +||++ +|.++|
T Consensus 186 ~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~r~G 261 (406)
T 4adb_A 186 AVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDLLT--TAKALGGGFPVG 261 (406)
T ss_dssp EEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCE
T ss_pred EEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhHHHHhcCCCCCEEE--echhhcCCCCeE
Confidence 99988 55552 2368999999999999999999995 654333211 1112 457774 59998 456889
Q ss_pred EEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++++++ ++.+.+......... +++....++...+++.+..+++
T Consensus 262 ~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~ 304 (406)
T 4adb_A 262 ALLATE------ECARVMTVGTHGTTY-GGNPLASAVAGKVLELINTPEM 304 (406)
T ss_dssp EEEECH------HHHHTCCTTSSCCSS-TTCHHHHHHHHHHHHHHSSHHH
T ss_pred EEEEcH------HHHhhhccCCcCCCC-CCCHHHHHHHHHHHHHHHhcCH
Confidence 999887 677766554333333 3445556666667776644433
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=150.83 Aligned_cols=226 Identities=16% Similarity=0.209 Sum_probs=136.7
Q ss_pred hhcccCCh-HHHHHHHHHHHHhhh-cccccc-------CCCCCcHHHHHHHhhHh--hccCCCCCCCCCCCCCcHHHHHH
Q 016668 81 YSLGEADP-EVCEIITKEKERQFK-SLELIA-------SENFTSRAVMEAVGSCL--TNKYSEGLPGKRYYGGNEYIDEL 149 (385)
Q Consensus 81 ~~l~~~dp-~~~~~i~~e~~~~~~-~l~Lia-------sen~~s~~V~~al~s~l--~~~y~~g~p~~r~~~G~~~~~~l 149 (385)
.++...++ .++.+.++.+...+. .++|-. +...+.+.|.+++.... ......+|+. ..|.+ ++
T Consensus 26 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~---~~G~~---~l 99 (448)
T 3meb_A 26 SGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPP---VAGFP---LF 99 (448)
T ss_dssp TTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCC---TTCCH---HH
T ss_pred hcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCC---CcchH---HH
Confidence 45666666 466666554433332 255431 22335677777755443 1122233433 23443 55
Q ss_pred HHHHHHHHHHHcCCC-----CCCCcceeecCCcHHHHHH--HHHHhccCCCEEeecCCCCCccccCCccccccccc----
Q 016668 150 ETLCQKRALAAFNLD-----ENKWGVNVQPLSGSPANFE--VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS---- 218 (385)
Q Consensus 150 e~~~~~~la~lfg~~-----~~~~~~~V~~~sGs~A~~~--a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~---- 218 (385)
++.+++++ +|.+ .++. +.+++.+|+.|+.. .+.++++|||+|++++|.|.+|.. .+.
T Consensus 100 r~~ia~~l---~g~~~~~~~~~~i-~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~--------~~~~~~~ 167 (448)
T 3meb_A 100 LEAAQFLM---FGKDSKAAQEGRI-ASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYG--------IYDKVFN 167 (448)
T ss_dssp HHHHHHHH---HCTTCHHHHTTCE-EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHH--------HHHHHHC
T ss_pred HHHHHHHh---cCCCccccCcCcE-EEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHH--------HHHhhHH
Confidence 55433332 4876 3211 11226667788876 566778999999999997766532 234
Q ss_pred cCcceEEEEeccccCC-CCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccc
Q 016668 219 GTSIYFESMPYRLDES-TGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 219 ~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~--~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~ 290 (385)
..|..+..+++. +++ ++.+|++++++.++. .++++++++.++||+ ..+ +++|+++|+++|+++++|++| .
T Consensus 168 ~~G~~v~~~~~~-~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay-~ 245 (448)
T 3meb_A 168 KLKVPYKEYTYL-RKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAY-Q 245 (448)
T ss_dssp TTTSCCEEECCB-CTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-T
T ss_pred hCCCeEEEEecc-ccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccc-c
Confidence 566655544431 444 578999999999875 245677777777763 444 667999999999999999997 4
Q ss_pred cccccCc---cc--CCC-C-CCc-EEEECCCccC--ccccEEEE--EE
Q 016668 291 GLVAASV---VA--DPF-K-YCD-VVTTTTHKSL--RGPRGGMI--FF 326 (385)
Q Consensus 291 Gli~~g~---~~--~p~-~-gaD-iv~~S~hK~l--~GprgG~I--~~ 326 (385)
++..++. .. ..+ + +.+ +++.|+||+| +|+|.|++ ++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~ 293 (448)
T 3meb_A 246 GFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVH 293 (448)
T ss_dssp TTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEEC
T ss_pred cccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeee
Confidence 4443321 00 011 1 334 6799999987 57888887 55
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-16 Score=152.26 Aligned_cols=228 Identities=14% Similarity=0.160 Sum_probs=130.6
Q ss_pred hhhcccCChH-HHHHHHHHHHHhh-hccccccC---CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHH
Q 016668 80 DYSLGEADPE-VCEIITKEKERQF-KSLELIAS---ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (385)
Q Consensus 80 ~~~l~~~dp~-~~~~i~~e~~~~~-~~l~Lias---en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~ 154 (385)
..++...+|+ ++.+.++.+.... .-++|-.+ +...++.+.+++.... .....+|.. ..|.+ ++++.++
T Consensus 17 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~-~~~~~~y~~---~~g~~---~lr~~ia 89 (409)
T 4eu1_A 17 QGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQAT-LGTNMDYAP---VTGIA---SFVEEAQ 89 (409)
T ss_dssp ----------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCC-CCSCCCCCC---TTCCH---HHHHHHH
T ss_pred hhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcC-ccccccCCC---CCCcH---HHHHHHH
Confidence 3567777886 6777766554433 33555432 3344666777776541 222223332 22433 5665444
Q ss_pred HHHHHHcCCC-----CCCCcceeecCCcHHHHHHH---HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEE
Q 016668 155 KRALAAFNLD-----ENKWGVNVQPLSGSPANFEV---YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (385)
Q Consensus 155 ~~la~lfg~~-----~~~~~~~V~~~sGs~A~~~a---~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (385)
+++ +|.+ .+++ ..+++.+|+.|+..+ +.+++++||+|++.+|.|.++.. .+...|..+..
T Consensus 90 ~~~---~~~~~~~~~~~~i-~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~ 157 (409)
T 4eu1_A 90 KLC---FGPTCAALRDGRI-ASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHES--------IFAKAGMELTP 157 (409)
T ss_dssp HHH---HCSSCHHHHTTCE-EEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHH--------HHHHTTCEEEE
T ss_pred HHH---cCCCchhhccCce-eeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCCeEEE
Confidence 433 4655 2211 012356667677654 34557899999999987765532 34456765544
Q ss_pred EeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccCc--
Q 016668 227 MPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAASV-- 297 (385)
Q Consensus 227 i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~-- 297 (385)
+++. +++++.+|++++++.++.. ++++++++.++|| ...+ +++|.++|+++|+++|+|++| .++...+.
T Consensus 158 ~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y-~~~~~~~~~~ 235 (409)
T 4eu1_A 158 YSYY-DPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAY-QGFATGQLDY 235 (409)
T ss_dssp ECCE-ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC-TTTTTSCHHH
T ss_pred EEee-cCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc-cccccCCccc
Confidence 4432 2345689999999998642 3556676777776 3455 566999999999999999997 44444331
Q ss_pred -cc--CCC-C-CCc-EEEECCCccC--ccccEEEE--EEeC
Q 016668 298 -VA--DPF-K-YCD-VVTTTTHKSL--RGPRGGMI--FFKK 328 (385)
Q Consensus 298 -~~--~p~-~-gaD-iv~~S~hK~l--~GprgG~I--~~~~ 328 (385)
.. ..+ + ..+ +++.|++|++ +|.|.|++ +..+
T Consensus 236 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~ 276 (409)
T 4eu1_A 236 DAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTAS 276 (409)
T ss_dssp HTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSS
T ss_pred chHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCC
Confidence 01 011 2 233 6889999997 57788986 5544
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.9e-17 Score=156.20 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=141.6
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCC---cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCC-c-HH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG---NEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-G-SP 179 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G---~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~s-G-s~ 179 (385)
+.+.+++..+|+.|++++.+.+.+ +. .++...|.. .....++.+.+++++++++|++..+ +|.+++ + +.
T Consensus 5 ~~~~~g~~~~p~~v~~a~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~---~v~~~~g~gt~ 78 (360)
T 1w23_A 5 FNFNAGPSALPKPALERAQKELLN-FN--DTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDY---QILFLQGGASL 78 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSS-ST--TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTE---EEEEESSHHHH
T ss_pred EeecCCCcCCCHHHHHHHHHHhhh-hc--cccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCc---eEEEECCcchH
Confidence 556677778999999999877643 21 122111110 1222344445788999999996311 344444 3 67
Q ss_pred HHHHHHHHhccC---CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHH-HhhhcCCcEE
Q 016668 180 ANFEVYTAILKP---HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-TAILFRPKLI 255 (385)
Q Consensus 180 A~~~a~~all~p---GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~-~i~~~~pklI 255 (385)
|+..++.+++.+ ||.|++..+. |.+. ..+...| .+..++ ++++++.+|++++++ .++. ++|+|
T Consensus 79 al~~~~~~l~~~~~~g~~vi~~~~~---~~~~------~~~~~~g-~~~~v~--~~~~~~~~d~~~l~~~~i~~-~~k~v 145 (360)
T 1w23_A 79 QFTMLPMNLLTKGTIGNYVLTGSWS---EKAL------KEAKLLG-ETHIAA--STKANSYQSIPDFSEFQLNE-NDAYL 145 (360)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHH---HHHH------HHHHTTS-EEEEEE--ECGGGTSCSCCCGGGCCCCT-TEEEE
T ss_pred HHHHHHHHhcCCCCcccEEEecchh---HHHH------HHHHHhC-CeEEee--cccccCcCCccchHhhccCC-CCCEE
Confidence 999999999865 5666655432 2211 1233456 655555 443345689999988 7743 78999
Q ss_pred EEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccE-EEEEEeCCCCc
Q 016668 256 IAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVL 332 (385)
Q Consensus 256 i~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~ 332 (385)
+++.+++| ...+ +|++++|++|++|++|..|.. +.++...|++++|+||++. |.| |++++++
T Consensus 146 ~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~-----~~~~~~~di~~~s~sK~~~-~~G~G~~~~~~---- 210 (360)
T 1w23_A 146 HITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSR-----PLKVNQFGMIYAGAQKNLG-PSGVTVVIVKK---- 210 (360)
T ss_dssp EEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTTS-CTTCEEEEEEH----
T ss_pred EEeCCCCCcceecc-----cccccCCceEEEechhhcCCC-----CcCcccCCEEEEEcccccC-CCCcEEEEEcH----
Confidence 88765554 3444 333489999999999976532 1123333899999999884 656 9999887
Q ss_pred hhHHHHHHhhcc-----------CCCccCCChHHHHHHHHHHHHHhh
Q 016668 333 GVELESAINNAV-----------FPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 333 ~~~~~~~i~~~~-----------fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
++.+++.... .....++++...++++..+++.+.
T Consensus 211 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 255 (360)
T 1w23_A 211 --DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIK 255 (360)
T ss_dssp --HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH
T ss_pred --HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 4444433211 011235677777777777887654
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=149.60 Aligned_cols=218 Identities=12% Similarity=0.104 Sum_probs=128.9
Q ss_pred hhhcccCCh-HHHHHHHHHHHHh------hhccccccCCC--CCcHHHHHHHhhHhhccC----CCCCCCCCCCCCcHHH
Q 016668 80 DYSLGEADP-EVCEIITKEKERQ------FKSLELIASEN--FTSRAVMEAVGSCLTNKY----SEGLPGKRYYGGNEYI 146 (385)
Q Consensus 80 ~~~l~~~dp-~~~~~i~~e~~~~------~~~l~Liasen--~~s~~V~~al~s~l~~~y----~~g~p~~r~~~G~~~~ 146 (385)
+.++.++++ +.|..+.+..... ..-+++...++ .+++.|++++...+.... ..+|+. ..|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~---~~g~~-- 78 (400)
T 3asa_A 4 NPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGP---DFGLP-- 78 (400)
T ss_dssp CHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCC---TTCCH--
T ss_pred chhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCC---CCCCH--
Confidence 445555555 4454443333321 12345544433 468999999887764321 122321 11332
Q ss_pred HHHHHHHHHHHHHH--cC-CCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcc
Q 016668 147 DELETLCQKRALAA--FN-LDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (385)
Q Consensus 147 ~~le~~~~~~la~l--fg-~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (385)
++++ .++++ +| ++.+ +|.+++| ++++..+ ..+++|||+|++.+|.|.++.. .+...|.
T Consensus 79 -~lr~----~la~~l~~g~~~~~----~v~~~~G~~~al~~~-~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~ 140 (400)
T 3asa_A 79 -ALRQ----KLSEDFYRGFVDAK----EIFISDGAKVDLFRL-LSFFGPNQTVAIQDPSYPAYLD--------IARLTGA 140 (400)
T ss_dssp -HHHH----HHHHTTSTTSSCGG----GEEEESCHHHHHHHH-HHHHCSSCEEEEEESCCHHHHH--------HHHHTTC
T ss_pred -HHHH----HHHHHHHcCCCCHH----HEEEccChHHHHHHH-HHHcCCCCEEEECCCCcHHHHH--------HHHHcCC
Confidence 5554 45555 57 5543 3555555 5577764 4667999999999987655421 2344565
Q ss_pred e-EEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEecccccccccc
Q 016668 223 Y-FESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAA 295 (385)
Q Consensus 223 ~-~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~ 295 (385)
. +..++ ++++ ....|+++ + .++|+|+++.++|| ...+ +++|.++|+++|+++|+|++|. ++...
T Consensus 141 ~~~~~~~--~~~~~~~~~~l~~----~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~ 211 (400)
T 3asa_A 141 KEIIALP--CLQENAFFPEFPE----D--THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS-TFISD 211 (400)
T ss_dssp SEEEEEE--CCGGGTTCCCCCT----T--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGCCC
T ss_pred cceEecc--cchhcCcccChhh----c--cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhh-hhhcC
Confidence 4 55555 4322 22344321 1 36899988777765 4455 6778899999999999999985 34333
Q ss_pred CcccCCC---CC-Cc--EEEECCCccC--ccccEEEEEEeCC
Q 016668 296 SVVADPF---KY-CD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 296 g~~~~p~---~g-aD--iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
+..+.++ ++ .| +++.|+||+| +|.|.|+++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~ 253 (400)
T 3asa_A 212 PSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQE 253 (400)
T ss_dssp TTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTT
T ss_pred CCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChh
Confidence 3222122 22 34 7899999997 6778899999875
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=147.31 Aligned_cols=224 Identities=17% Similarity=0.108 Sum_probs=136.6
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--c
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--K 190 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--~ 190 (385)
++++.+.+++...+.. +..+ . +.| ..+ ..+.+++++++++|++.+ ..+.++||++|+..++.++. .
T Consensus 61 ~~~~~v~~a~~~~~~~-~~~~--~-~~~-~~~----~~~~l~~~la~~~~~~~~---~v~~~~gg~~a~~~al~~~~~~~ 128 (395)
T 1vef_A 61 HGNPEVVEAVKRQAET-LMAM--P-QTL-PTP----MRGEFYRTLTAILPPELN---RVFPVNSGTEANEAALKFARAHT 128 (395)
T ss_dssp BTCHHHHHHHHHHHHH-CCCC--C-TTS-CCH----HHHHHHHHHHHTSCTTEE---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-CCCC--c-ccc-CCH----HHHHHHHHHHHhcCCCcC---EEEEcCcHHHHHHHHHHHHHHHh
Confidence 4789999999887754 2211 1 122 223 333355678889987543 23556678889999998764 7
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEE---EEeccccCCC---CCCCHHHHHHHhhhcCCcEEEEcCCC--C
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE---SMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGASA--Y 262 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~---~i~~~~~~~~---~~iD~d~le~~i~~~~pklIi~~~s~--~ 262 (385)
+||+|++.++.+.+... ..+...|.... ..+ +..+. ...|++++++.++. ++++|++++++ +
T Consensus 129 ~~~~vi~~~~~y~~~~~-------~~~~~~g~~~~~~~~~p--~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t 198 (395)
T 1vef_A 129 GRKKFVAAMRGFSGRTM-------GSLSVTWEPKYREPFLP--LVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEG 198 (395)
T ss_dssp SCCEEEEETTCCCCSSH-------HHHHTCCCHHHHGGGCS--CSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTT
T ss_pred CCCeEEEEcCCcCCCch-------hhhhhcCCcccccccCC--CCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCC
Confidence 89999998876532211 01122232100 001 00000 02589999999864 68898887544 3
Q ss_pred CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccCcc-ccEEEEEEeCCCCchh
Q 016668 263 PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDPVLGV 334 (385)
Q Consensus 263 ~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l~G-prgG~I~~~~~~~~~~ 334 (385)
|...+ +++|.++|+++|++|++|++|. |+...|.. + ...+ +.|++ |+||+|.+ ++.|++++++
T Consensus 199 G~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~------ 269 (395)
T 1vef_A 199 GVRPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMRE------ 269 (395)
T ss_dssp TSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEH------
T ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehH------
Confidence 55567 9999999999999999999996 65332321 1 1122 46876 66999854 5779999887
Q ss_pred HHHHHHhhccCCCccCCChHHHHHHHHHHHHHhh
Q 016668 335 ELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 335 ~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
++.+.+........ .+++....++...+++.+.
T Consensus 270 ~~~~~l~~~~~~~~-~~~~~~~~~a~~~al~~~~ 302 (395)
T 1vef_A 270 EVARSMPKGGHGTT-FGGNPLAMAAGVAAIRYLE 302 (395)
T ss_dssp HHHHTSCTTSSCCS-STTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCcCCC-cCCCHHHHHHHHHHHHHHH
Confidence 56666654222221 2345555556666776553
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-16 Score=155.07 Aligned_cols=233 Identities=14% Similarity=0.047 Sum_probs=138.7
Q ss_pred hhhhhcccCChHHHHHHHHHHHHhhhccccccCCCC-----CcHHHHHHHhhHhh--c-cCCCCCCCCCCCCCcHHHHHH
Q 016668 78 FVDYSLGEADPEVCEIITKEKERQFKSLELIASENF-----TSRAVMEAVGSCLT--N-KYSEGLPGKRYYGGNEYIDEL 149 (385)
Q Consensus 78 ~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~-----~s~~V~~al~s~l~--~-~y~~g~p~~r~~~G~~~~~~l 149 (385)
..+.+|......++....+.+. +...++|-.+++. +++.+++++...+. . ....+|+. ..|.+ ++
T Consensus 9 ~~~~~l~~~~~~~~~~~~~l~~-~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~---~~G~~---~l 81 (422)
T 3d6k_A 9 YDAARLAQVREEVTAKYAELKA-KNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGG---LLGIA---DI 81 (422)
T ss_dssp ---------CHHHHHHHHHHHH-TTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCC---SSCCH---HH
T ss_pred CCHHHHHhhHHHHHHHHHHHhc-cCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCC---CCCCH---HH
Confidence 3456677778888877655433 2234666655552 34466666543311 1 11224443 22333 45
Q ss_pred HHHHHHHHHHHcCCCCCCCcceeecCCcH-HHH--HHHHHHhccC------------CCEEeecCCCCCccccCCccccc
Q 016668 150 ETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN--FEVYTAILKP------------HDRIMGLDLPHGGHLSHGFMTPK 214 (385)
Q Consensus 150 e~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~--~~a~~all~p------------GD~Vl~~~~~~ggh~s~~~~~~~ 214 (385)
++ .+++++|++.+ +|.+++|+ +++ ..++.++.++ ||+|++.+|.|.++..
T Consensus 82 r~----~ia~~~~~~~~----~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~------- 146 (422)
T 3d6k_A 82 RE----LWAEALGLPAD----LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFT------- 146 (422)
T ss_dssp HH----HHHHHHTCCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH-------
T ss_pred HH----HHHHHhCCChh----HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHH-------
Confidence 44 56677788764 45566665 476 4566777666 3479999887655421
Q ss_pred cccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEE-EcCCCCC--CCCCHH---HHHHHHH-HcCcEEEEecc
Q 016668 215 RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII-AGASAYP--RDFDYP---RMRQIAD-AVGALLMMDMA 287 (385)
Q Consensus 215 ~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi-~~~s~~~--~~~dl~---~I~~ia~-~~ga~livD~a 287 (385)
.+...|..+..++ +++ ++ +|++++++.++..++|+|+ +..++|| ...+.+ +|.++|+ ++|+++|+|++
T Consensus 147 -~~~~~g~~~~~v~--~~~-~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~ 221 (422)
T 3d6k_A 147 -ITEHFGFEMINVP--MTD-EG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNA 221 (422)
T ss_dssp -HHHHHTCEEEEEE--EET-TE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred -HHHHcCCEEEecC--CCC-CC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECC
Confidence 2345566554444 553 33 9999999998654688887 5666665 566655 7777777 89999999999
Q ss_pred ccc-cccccCcccCCC-------C--CCcEEEECCCcc-CccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 288 HIS-GLVAASVVADPF-------K--YCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 288 h~~-Gli~~g~~~~p~-------~--gaDiv~~S~hK~-l~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
|.. ++...+....++ + +.++++.|+||+ ++|+|.|++++++ ++.+.+...
T Consensus 222 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~------~l~~~l~~~ 282 (422)
T 3d6k_A 222 YALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSK------ENIEWYASH 282 (422)
T ss_dssp TTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCH------HHHHHHHHH
T ss_pred ccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCH------HHHHHHHHH
Confidence 863 443332111122 2 345889999996 4778999999986 576666543
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=148.36 Aligned_cols=194 Identities=15% Similarity=0.145 Sum_probs=122.0
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceee---cCCcHHHHHHHHHH
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQ---PLSGSPANFEVYTA 187 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg--~~~~~~~~~V~---~~sGs~A~~~a~~a 187 (385)
++++.+.+++...+.+....+|.. ..|.+ ++++...+++....+ ++.+ +|. +.+|+.|+..++.+
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~---~~g~~---~lr~~la~~~~~~~~~~~~~~----~v~~~~~~g~~~a~~~~~~~ 113 (396)
T 2q7w_A 44 PVLTSVKKAEQYLLENETTKNYLG---IDGIP---EFGRCTQELLFGKGSALINDK----RARTAQTPGGTGALRVAADF 113 (396)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCC---TTCCH---HHHHHHHHHHHCTTCHHHHTT----CEEEEEESHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHhhcCcccccCCCC---CCCCH---HHHHHHHHHHhcCCCCccccc----cEEEEecccchhhHHHHHHH
Confidence 467999999987664322223422 12333 566544444322212 1232 233 66677899988876
Q ss_pred h--ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCC
Q 016668 188 I--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYP 263 (385)
Q Consensus 188 l--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~~ 263 (385)
+ ++|||+|++.+|.|.++.. .+...|..+..+++... +++.+|++++++.+++. +++++++..++||
T Consensus 114 ~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~np 184 (396)
T 2q7w_A 114 LAKNTSVKRVWVSNPSWPNHKS--------VFNSAGLEVREYAYYDA-ENHTLDFDALINSLNEAQAGDVVLFHGCCHNP 184 (396)
T ss_dssp HHHHSCCCEEEEEESCCTHHHH--------HHHHTTCEEEEEECEET-TTTEECHHHHHHHHTTCCTTCEEEEECSSCTT
T ss_pred HHHhCCCCEEEEcCCCchhHHH--------HHHHcCCceEEEecccC-CCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 5 5799999999987755421 23455665554443211 35679999999998653 2467777777766
Q ss_pred --CCC---CHHHHHHHHHHcCcEEEEeccccccccccC--ccc--CCCC--C-CcEEEECCCccC--ccccEEEEEE
Q 016668 264 --RDF---DYPRMRQIADAVGALLMMDMAHISGLVAAS--VVA--DPFK--Y-CDVVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 264 --~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g--~~~--~p~~--g-aDiv~~S~hK~l--~GprgG~I~~ 326 (385)
... ++++|.++|+++|+++++|++|. ++..++ ... ..+. + .++++.|+||++ +|.|.|++++
T Consensus 185 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~ 260 (396)
T 2q7w_A 185 TGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ-GFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTL 260 (396)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEE
Confidence 344 46789999999999999999974 333321 111 1121 2 237899999997 4778899987
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=150.19 Aligned_cols=227 Identities=12% Similarity=0.040 Sum_probs=135.4
Q ss_pred hhcccCChHHHHHHHHHHHHh--hhccccccCC-------CCCcHHHHHHHhhHhhcc-CCCCCCCCCCCCCcHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQ--FKSLELIASE-------NFTSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELE 150 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~--~~~l~Liase-------n~~s~~V~~al~s~l~~~-y~~g~p~~r~~~G~~~~~~le 150 (385)
+++..+++..+..+.+..... ...++|-.++ ..+++.|.+++...+.+. ...+|.. ..|.+ +++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~---~~g~~---~lr 80 (412)
T 1ajs_A 7 AEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLP---ILGLA---EFR 80 (412)
T ss_dssp TTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCC---TTCCH---HHH
T ss_pred hhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCC---CCCCH---HHH
Confidence 445566665444343332221 1335554333 245799999998765221 1223422 12333 566
Q ss_pred HHHHHHHHHHcCC--CCCCCcceee--cCCcHHHHHHHH--HHhccCC-----CEEeecCCCCCccccCCcccccccccc
Q 016668 151 TLCQKRALAAFNL--DENKWGVNVQ--PLSGSPANFEVY--TAILKPH-----DRIMGLDLPHGGHLSHGFMTPKRRVSG 219 (385)
Q Consensus 151 ~~~~~~la~lfg~--~~~~~~~~V~--~~sGs~A~~~a~--~all~pG-----D~Vl~~~~~~ggh~s~~~~~~~~~~~~ 219 (385)
+...+++...+|. +.++ .+. +.+|+.|+..++ ..+++|| |+|++.+|.|.++.. .+..
T Consensus 81 ~~la~~~~~~~~~~~~~~~---v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~--------~~~~ 149 (412)
T 1ajs_A 81 TCASRLALGDDSPALQEKR---VGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG--------VFTT 149 (412)
T ss_dssp HHHHHHHHCTTCHHHHTTC---EEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH--------HHHH
T ss_pred HHHHHHHhcCCCCccCCCc---EEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHH--------HHHH
Confidence 5444443322222 3321 233 556778999885 3557899 999999987765421 2345
Q ss_pred Ccce-EEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCC--CCC---CHHHHHHHHHHcCcEEEEecccccc
Q 016668 220 TSIY-FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYP--RDF---DYPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 220 ~g~~-~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~~--~~~---dl~~I~~ia~~~ga~livD~ah~~G 291 (385)
.|.. +..+++.. ++++.+|++++++.+++. ++++|++..++|| ... ++++|+++|+++|++||+|++| .+
T Consensus 150 ~g~~~~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y-~~ 227 (412)
T 1ajs_A 150 AGFKDIRSYRYWD-TEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAY-QG 227 (412)
T ss_dssp TTCSCEEEEECEE-TTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TT
T ss_pred cCCceeEEEeeec-CCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccc-cc
Confidence 5665 55555321 135679999999998754 4457777777776 333 4678999999999999999997 34
Q ss_pred ccccC---ccc--CCCC-CCc--EEEECCCccC--ccccEEEEEE
Q 016668 292 LVAAS---VVA--DPFK-YCD--VVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 292 li~~g---~~~--~p~~-gaD--iv~~S~hK~l--~GprgG~I~~ 326 (385)
+...+ ... ..+. ..| +++.|+||++ .|.|.|++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~ 272 (412)
T 1ajs_A 228 FASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTV 272 (412)
T ss_dssp TTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEE
T ss_pred ccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEE
Confidence 44332 111 1121 223 7899999987 3677899998
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-15 Score=144.22 Aligned_cols=221 Identities=11% Similarity=0.023 Sum_probs=139.1
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccC--
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP-- 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~p-- 191 (385)
.+|.|.+++...+.. +..+ ... + ..+...+ .++++++++|.+. .+.++||++|+..++..+..+
T Consensus 53 ~~p~v~~a~~~~~~~-~~~~--~~~-~-~~~~~~~----l~~~la~~~g~~~-----v~~~~~gt~a~~~al~~~~~~~~ 118 (392)
T 3ruy_A 53 RHPKIINALIDQANR-VTLT--SRA-F-HSDQLGP----WYEKVAKLTNKEM-----VLPMNTGAEAVETAIKTARRWAY 118 (392)
T ss_dssp TCHHHHHHHHHHHTT-CSCC--CTT-S-EETTHHH----HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cccc--ccc-c-CCHHHHH----HHHHHHHhcCCCE-----EEEeCcHHHHHHHHHHHHHHhhh
Confidence 578999998877643 3221 111 1 2232333 4557888998443 466778899999999877654
Q ss_pred --------CCEEeecCCCCCccccCCccccccccccCcc----------eEEEEeccccCCCCCCCHHHHHHHhhhcCCc
Q 016668 192 --------HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI----------YFESMPYRLDESTGLVDYDMLEKTAILFRPK 253 (385)
Q Consensus 192 --------GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~----------~~~~i~~~~~~~~~~iD~d~le~~i~~~~pk 253 (385)
||+|++.++.|.|.... .....+. ......++ ..|+++|++.++ .+++
T Consensus 119 ~~~~~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~-~~~~ 184 (392)
T 3ruy_A 119 DVKKVEANRAEIIVCEDNFHGRTMG-------AVSMSSNEEYKRGFGPMLPGIIVIP------YGDLEALKAAIT-PNTA 184 (392)
T ss_dssp HTSCCCTTCCEEEEETTCCCCSSHH-------HHHTCSCTTTTTTCCSCCSSEEEEC------TTCHHHHHHHCC-TTEE
T ss_pred hccCCCCCCcEEEEEcCCcCCCCHh-------hhhccCChhhccccCCCCCCCeeeC------cccHHHHHHHhc-cCeE
Confidence 78999998876443210 0001000 00111111 238999999996 4789
Q ss_pred EEEEcCCCCC--CCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCcc--ccEE
Q 016668 254 LIIAGASAYP--RDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG--PRGG 322 (385)
Q Consensus 254 lIi~~~s~~~--~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~G--prgG 322 (385)
+|++.+++++ ...+ +++|.++|+++|++|++|++|. |+...|... ...+ ..|++++| |+++| .++|
T Consensus 185 ~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G 261 (392)
T 3ruy_A 185 AFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT-GLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPIS 261 (392)
T ss_dssp EEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCE
T ss_pred EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-CCCccccchhhhccCCCCCEEEEc--hhhhCChhhhE
Confidence 9999777654 5566 9999999999999999999994 554333211 1112 46777664 99977 7899
Q ss_pred EEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++++++ ++.+.+........+ +++...+++...+++.+..++.
T Consensus 262 ~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~ 304 (392)
T 3ruy_A 262 CAAANR------DILGVFEPGSHGSTF-GGNPLACAVSIAALEVLEEEKL 304 (392)
T ss_dssp EEEECH------HHHTTCCTTSSCCSS-TTCHHHHHHHHHHHHHHHHTTH
T ss_pred EEEECH------HHHhhhccCCcCCCC-CCCHHHHHHHHHHHHHHHhhhH
Confidence 999987 566666544333333 4555666666777776543333
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=154.18 Aligned_cols=214 Identities=14% Similarity=0.056 Sum_probs=135.0
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccC---CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCCCCCcceeecCC-cHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKY---SEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLS-GSP 179 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y---~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg-~~~~~~~~~V~~~s-Gs~ 179 (385)
-.++.++.+ |..+.+++...+.... ..+|+. ..|.+ ++++.+++++.+.+| .+.+ . .+|.+++ +++
T Consensus 94 p~~~~~~~~-P~~~~~~~~~~l~~~~~~~~~~Y~~---~~G~~---~lr~~ia~~~~~~~gG~~~~-~-~~i~~t~G~~~ 164 (498)
T 3ihj_A 94 PNLLDSPSF-PEDAKKRARRILQACGGNSLGSYSA---SQGVN---CIREDVAAYITRRDGGVPAD-P-DNIYLTTGASD 164 (498)
T ss_dssp GGGGGCSSS-CHHHHHHHHHHHHHC-------------CCSCH---HHHHHHHHHHHHHTTTCCCC-G-GGEEEESSHHH
T ss_pred ccccCcccC-CHHHHHHHHHHHHhccCCCCCCCCC---CCCHH---HHHHHHHHHHHHhcCCCCCC-c-ccEEEcCCHHH
Confidence 344444444 4555555555554321 123443 23544 677777788888885 5321 1 1344444 556
Q ss_pred HHHHHHHHhccCCC----EEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhc----
Q 016668 180 ANFEVYTAILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILF---- 250 (385)
Q Consensus 180 A~~~a~~all~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~---- 250 (385)
|+..++.+++++|| +|++.+|.|.++.. .+...|.. .++|+++++ ++.+|+++|++.+++.
T Consensus 165 ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~--------~~~~~g~~--~v~~~~~~~~~~~~d~~~le~~l~~~~~~~ 234 (498)
T 3ihj_A 165 GISTILKILVSGGGKSRTGVMIPIPQYPLYSA--------VISELDAI--QVNYYLDEENCWALNVNELRRAVQEAKDHC 234 (498)
T ss_dssp HHHHHHHHHCCCCGGGSEEEEEEESCCTHHHH--------HHHHTTCE--EEEEECBGGGTTBCCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHcCCCCCCCCEEEEeCCCchhHHH--------HHHHcCCE--EEEeeccccccCCCCHHHHHHHHHhhhccC
Confidence 99999999999986 99999987755421 34456664 444445544 4589999999998763
Q ss_pred CCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCc-ccCCCC------------CCc-EEEEC
Q 016668 251 RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV-VADPFK------------YCD-VVTTT 311 (385)
Q Consensus 251 ~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~~p~~------------gaD-iv~~S 311 (385)
++|+|++..++||+ .. ++++|+++|+++|++|++|++|. .+++.+. ...++. ... +++.|
T Consensus 235 ~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S 313 (498)
T 3ihj_A 235 DPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ-DNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHS 313 (498)
T ss_dssp EEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc-ccccCCCCCcCCHHHHHHHhcccccCceeEEEEec
Confidence 47888887777763 33 37789999999999999999984 4443321 111221 112 57889
Q ss_pred CCccC---ccccEEEEEE--eCCCCchhHHHHHHhhc
Q 016668 312 THKSL---RGPRGGMIFF--KKDPVLGVELESAINNA 343 (385)
Q Consensus 312 ~hK~l---~GprgG~I~~--~~~~~~~~~~~~~i~~~ 343 (385)
+||++ +|.|+|+++. .++ ++.+.+...
T Consensus 314 ~SK~~~G~~G~R~G~~~~~~~~~-----~l~~~l~~~ 345 (498)
T 3ihj_A 314 TSKGYMGECGYRGGYMEVINLHP-----EIKGQLVKL 345 (498)
T ss_dssp SSSSTTCCSSSCCEEEEEESCCH-----HHHHHHHHH
T ss_pred cccccccCcccceEEEEEecCCH-----HHHHHHHHH
Confidence 99998 5889999984 232 566666543
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-14 Score=142.54 Aligned_cols=242 Identities=15% Similarity=0.047 Sum_probs=140.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc---c
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---K 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---~ 190 (385)
.+|.|++++...+..... ++..+| ..+...+ .+++++++++.+.+ -.+++++|++|+..++.++. +
T Consensus 60 ~~p~v~~a~~~~~~~~~~--~~~~~~--~~~~~~~----l~~~la~~~~~~~~---~v~~~~ggtea~~~ai~~~~~~~~ 128 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSH--VMFGGI--THAPAIE----LCRKLVAMTPQPLE---CVFLADSGSVAVEVAMKMALQYWQ 128 (429)
T ss_dssp SCHHHHHHHHHHHHHCSC--CCCSSE--ECHHHHH----HHHHHHHHSCTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--cccccc--CCHHHHH----HHHHHHHhCCCCCC---EEEEeCCHHHHHHHHHHHHHHHhc
Confidence 589999999887754321 211111 1222222 34468899987653 13556678889999987653 3
Q ss_pred ----CCCEEeecCCCCCccccCCc-ccc-----ccccccCcceEEEEecccc---CCCCCCCHHHHHHHhhh--cCCcEE
Q 016668 191 ----PHDRIMGLDLPHGGHLSHGF-MTP-----KRRVSGTSIYFESMPYRLD---ESTGLVDYDMLEKTAIL--FRPKLI 255 (385)
Q Consensus 191 ----pGD~Vl~~~~~~ggh~s~~~-~~~-----~~~~~~~g~~~~~i~~~~~---~~~~~iD~d~le~~i~~--~~pklI 255 (385)
|||+|++.++.+.+...... ... ..........+..++++.+ ...+.+|+++|++.+++ .++++|
T Consensus 129 ~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 208 (429)
T 1s0a_A 129 AKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAV 208 (429)
T ss_dssp HHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEE
T ss_pred ccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEE
Confidence 79999999876543211000 000 0000000012344454321 11235899999998864 356778
Q ss_pred EEcCC-CC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccCcc--ccEEE
Q 016668 256 IAGAS-AY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLRG--PRGGM 323 (385)
Q Consensus 256 i~~~s-~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l~G--prgG~ 323 (385)
++++. ++ |...+ +++|+++|+++|++||+|++|. |+...|.. . ..++ ..|+++ ++|+|.| .+.|+
T Consensus 209 i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~g~~g~~~~~~~~~~~~d~~t--~sK~l~~G~~~iG~ 285 (429)
T 1s0a_A 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-GFGRTGKLFACEHAEIAPDILC--LGKALTGGTMTLSA 285 (429)
T ss_dssp EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSSSCCEE
T ss_pred EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCcccchHHHhhhcCCCCCEEE--ecccccCCCccceE
Confidence 87765 44 43444 9999999999999999999994 43222221 1 1122 467775 5599865 57799
Q ss_pred EEEeCCCCchhHHHHHHhhcc---C-CCccCCChHHHHHHHHHHHHHhhCchHHHH
Q 016668 324 IFFKKDPVLGVELESAINNAV---F-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 375 (385)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~~~---f-p~~qg~p~~~~iaala~Al~e~~~~~~~~y 375 (385)
+++++ ++.+.+.... + ....-+++...+++..++++.+.++++.++
T Consensus 286 ~~~~~------~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~ 335 (429)
T 1s0a_A 286 TLTTR------EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQ 335 (429)
T ss_dssp EEECH------HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHH
T ss_pred EEeCH------HHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 99877 5777775431 1 111123455666676778877666555433
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-15 Score=151.15 Aligned_cols=194 Identities=14% Similarity=0.097 Sum_probs=128.2
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCCCCCcceeecCC-cHHHHHHHHHH----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN--LDENKWGVNVQPLS-GSPANFEVYTA---- 187 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg--~~~~~~~~~V~~~s-Gs~A~~~a~~a---- 187 (385)
++.+++++...+.. .+|+.. ..|.+ ++++.+++++.+.++ ...... .+|.+++ |++|+..++.+
T Consensus 117 ~~~~v~a~~~~~~~---~~y~~~--~~g~~---~lr~~ia~~l~~~~~~~~~~~~~-~~i~~t~G~t~al~~~~~~l~~~ 187 (533)
T 3f6t_A 117 RDKVVAEWVNGAVA---NNYPVP--DRCLV---NTEKIINYFLQELSYKDANLAEQ-TDLFPTEGGTAAIVYAFHSLAEN 187 (533)
T ss_dssp HHHHHHHHHHHHHT---CSCCSS--SSCCH---HHHHHHHHHHHHHHTTTCCCGGG-EEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHh---CCCCCC--cccHH---HHHHHHHHHHHHhcCCCCCCCCc-ceEEEECCHHHHHHHHHHHhhhh
Confidence 56666666555432 133311 12444 677777777766633 332111 1344555 55699999888
Q ss_pred -hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecccc-CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--
Q 016668 188 -ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLD-ESTGLVDYDMLEKTAILFRPKLIIAGASAYP-- 263 (385)
Q Consensus 188 -ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~-~~~~~iD~d~le~~i~~~~pklIi~~~s~~~-- 263 (385)
+++|||+|++.+|.|.++.. .+...|..+..++++.+ .+++.+|+++|++.++. ++|+|++..++||
T Consensus 188 ~l~~~gd~Viv~~p~~~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~k~v~l~~p~NPtG 258 (533)
T 3f6t_A 188 HLLKKGDKIAINEPIFTPYLR--------IPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP-SIKALIVVNPTNPTS 258 (533)
T ss_dssp TSSCTTCEEEEESSCCHHHHT--------SGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT-TEEEEEEESSCTTTC
T ss_pred hccCCcCEEEEcCCCcHHHHH--------HHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC-CCeEEEEeCCCCCCc
Confidence 78999999999998765532 23455666666664432 23568999999999864 7899888777765
Q ss_pred CCCCH---HHHHHHHH-HcCcEEEEeccccccccccCcccCCCC---CCcEEEECCCccC--ccccEEEEEEeCC
Q 016668 264 RDFDY---PRMRQIAD-AVGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 264 ~~~dl---~~I~~ia~-~~ga~livD~ah~~Gli~~g~~~~p~~---gaDiv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
...+. ++|.++|+ ++|+++|+|++|. ++.... +.... +.++++.|+||++ +|+|.|+++++++
T Consensus 259 ~~~~~~~l~~l~~la~~~~~~~li~De~y~-~~~~~~--~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~ 330 (533)
T 3f6t_A 259 KEFDTNALNAIKQAVEKNPKLMIISDEVYG-AFVPNF--KSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEK 330 (533)
T ss_dssp BCCCHHHHHHHHHHHHHCTTCEEEEECTTG-GGSTTC--CCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESS
T ss_pred cccCHHHHHHHHHHHHhCCCCEEEEcCCcc-ccccCc--cCHhhcCCCCEEEEecCcccCCCcccceEEEEECcH
Confidence 45554 47888888 6899999999985 444321 11111 2348899999997 6888999999886
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.3e-15 Score=147.29 Aligned_cols=221 Identities=14% Similarity=0.100 Sum_probs=135.3
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
.+|.|.+++...+.. +.. .... + ..+...++ ++++++++|.+. .++++||++|+..++.++.
T Consensus 93 ~~p~v~~Ai~~~~~~-~~~--~~~~-~-~~~~~~~l----~~~la~~~g~~~-----v~~~~sGseA~~~al~~~~~~~~ 158 (439)
T 2oat_A 93 CHPKIVNALKSQVDK-LTL--TSRA-F-YNNVLGEY----EEYITKLFNYHK-----VLPMNTGVEAGETACKLARKWGY 158 (439)
T ss_dssp TCHHHHHHHHHHHTT-CSC--CCTT-S-EESSHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cCc--ccCc-c-CCHHHHHH----HHHHHHhcCCCE-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 689999999887643 221 1111 2 12222333 456778888543 3567789999999998764
Q ss_pred -----cCC-CEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCCCCCCCHHHHHHHhhhcC
Q 016668 190 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDESTGLVDYDMLEKTAILFR 251 (385)
Q Consensus 190 -----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~~~~iD~d~le~~i~~~~ 251 (385)
+|| |+|++.++.+.|... ..+...| ..+..++ . .|+++|++.++..+
T Consensus 159 ~~~g~~~g~~~vi~~~~~yhg~~~-------~~~~~~g~~~~~~~~~p~~~~v~~~~--~------~d~~~le~~l~~~~ 223 (439)
T 2oat_A 159 TVKGIQKYKAKIVFAAGNFWGRTL-------SAISSSTDPTSYDGFGPFMPGFDIIP--Y------NDLPALERALQDPN 223 (439)
T ss_dssp HTTCCCTTCCEEEEETTCCCCSSH-------HHHTTCCCHHHHTTSCSCCTTEEEEC--S------SCHHHHHHHTTSTT
T ss_pred hccCCCCCCCeEEEEcCCCCCCCH-------hHhhcCCChhcccCCCCCCCCeEEeC--C------CCHHHHHHHhCCCC
Confidence 467 899998876533211 0111222 1222222 1 38999999985336
Q ss_pred CcEEEEcCCC--CCCCC----CHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCcc--cc
Q 016668 252 PKLIIAGASA--YPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG--PR 320 (385)
Q Consensus 252 pklIi~~~s~--~~~~~----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~G--pr 320 (385)
+++|++++.+ .|... ++++|+++|+++|++||+|++| .|+...|... ..+. ..|++ |++|+|.| .+
T Consensus 224 ~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~ 300 (439)
T 2oat_A 224 VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYP 300 (439)
T ss_dssp EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSC
T ss_pred EEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCcchhHHHhCCCCcEE--EecccccCCCCC
Confidence 7788886542 23333 7999999999999999999999 5654333211 1122 46876 66799854 58
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 321 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
+|++++++ ++.+.+.........+ .+....++...+++.+.++++.
T Consensus 301 ~G~v~~~~------~~~~~l~~~~~~~t~~-~~~~~~aaa~aal~~~~~~~~~ 346 (439)
T 2oat_A 301 VSAVLCDD------DIMLTIKPGEHGSTYG-GNPLGCRVAIAALEVLEEENLA 346 (439)
T ss_dssp CEEEEECH------HHHTTSCTTSSCCSST-TCHHHHHHHHHHHHHHHHTTHH
T ss_pred eEEEEECH------HHHhccCCCCcccCCC-cCHHHHHHHHHHHHHHhhhhHH
Confidence 99999987 5666554432223333 3344455555677766544443
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=154.84 Aligned_cols=192 Identities=9% Similarity=0.029 Sum_probs=130.5
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccC----CCEEeecCCCCCccccCCcccccccc
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP----HDRIMGLDLPHGGHLSHGFMTPKRRV 217 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~p----GD~Vl~~~~~~ggh~s~~~~~~~~~~ 217 (385)
|.+..-.+|+....|+.+++|++.. . ..++++++|.++.++..+.+++ ||.|+++.- .|.|. .+.+
T Consensus 92 ~~~~~~~~e~~~~~~~~~~lGlp~~-~-~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~---aHkSv-----~kAl 161 (450)
T 3bc8_A 92 GSSLLNKITNSLVLNVIKLAGVHSV-A-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI---DQKSC-----FKSM 161 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTC-C-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECC---CCHHH-----HHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCC-c-eEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECC---cHHHH-----HHHH
Confidence 3444557888889999999999864 2 2244455554545455555443 899988754 44432 1456
Q ss_pred ccCcceEEEEeccccCCCCCCCHHHHHHHhhhcC---CcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccc
Q 016668 218 SGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR---PKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGL 292 (385)
Q Consensus 218 ~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~---pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gl 292 (385)
.+.|.....++...+++.+.+|++.|++++++++ +-+|++..+.++ ...|+++|+++|+++|+++++|+||+..+
T Consensus 162 ~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 162 VTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp HHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred HHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhh
Confidence 7788876666544444567899999999997643 234555566666 57899999999999999999999997654
Q ss_pred cccCccc-CCC--CCCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHhhccCCCcc
Q 016668 293 VAASVVA-DPF--KYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQ 349 (385)
Q Consensus 293 i~~g~~~-~p~--~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~~~~fp~~q 349 (385)
.....++ ..+ +++|+++.|+|||+..|-+ ++++.+++ ++.+++.. .+++.+
T Consensus 242 ~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~-----~~~~~~~~-~~~g~~ 296 (450)
T 3bc8_A 242 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE-----PFIQDISK-MYPGRA 296 (450)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH-----HHHHHHHH-HSCSCB
T ss_pred hhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCH-----HHHHHHHH-HhhcCC
Confidence 3321122 334 4799999999999988854 66666654 55566643 455544
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-15 Score=146.10 Aligned_cols=191 Identities=17% Similarity=0.228 Sum_probs=121.3
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC--CCCCCcceee---cCCcHHHHHHHHHH
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNL--DENKWGVNVQ---PLSGSPANFEVYTA 187 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~--~~~~~~~~V~---~~sGs~A~~~a~~a 187 (385)
++++.|.+++...+.+....+|+. ..|.+ ++++..++++. +. +.+ +|. +.+|+.|+..++.+
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~---~~g~~---~lr~~la~~~~---~~~~~~~----~v~~~~~~g~~~a~~~~~~~ 110 (394)
T 2ay1_A 44 PIMRAVHAAEQRMLETETTKTYAG---LSGEP---EFQKAMGELIL---GDGLKSE----TTATLATVGGTGALRQALEL 110 (394)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCC---SSCCH---HHHHHHHHHHH---GGGCCGG----GEEEEEEEHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhcCCcccCCCCC---CCCcH---HHHHHHHHHHh---CCCCCcc----cEEEEecCCchhHHHHHHHH
Confidence 457999999987664322234433 12333 55554433332 43 332 233 56677899999887
Q ss_pred hc--cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCC
Q 016668 188 IL--KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYP 263 (385)
Q Consensus 188 ll--~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~~ 263 (385)
+. .|||+|++.+|.|.++.. .+...|..+..++++.. +++.+|++++++.+++. +++++++..++||
T Consensus 111 ~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~np 181 (394)
T 2ay1_A 111 ARMANPDLRVFVSDPTWPNHVS--------IMNFMGLPVQTYRYFDA-ETRGVDFEGMKADLAAAKKGDMVLLHGCCHNP 181 (394)
T ss_dssp HHHHCTTCCEEEEESCCHHHHH--------HHHHHTCCEEEEECEET-TTTEECHHHHHHHHHTCCTTCEEEEESSSCTT
T ss_pred HHhcCCCCEEEEcCCCChhHHH--------HHHHcCCceEEEecccc-cCCccCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 74 499999999887655321 23345665555553211 35679999999998653 2456676777766
Q ss_pred --CCC---CHHHHHHHHHHcCcEEEEeccccccccccC---ccc-CCCC--CCc-EEEECCCccC--ccccEEEEEE
Q 016668 264 --RDF---DYPRMRQIADAVGALLMMDMAHISGLVAAS---VVA-DPFK--YCD-VVTTTTHKSL--RGPRGGMIFF 326 (385)
Q Consensus 264 --~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g---~~~-~p~~--gaD-iv~~S~hK~l--~GprgG~I~~ 326 (385)
... ++++|.++|+++|+++|+|++|. ++..++ ..+ ..+. +.| +++.|+||++ +|.|.|++++
T Consensus 182 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~ 257 (394)
T 2ay1_A 182 TGANLTLDQWAEIASILEKTGALPLIDLAYQ-GFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLA 257 (394)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEEECCT-TSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEecCcc-ccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEE
Confidence 344 36788999999999999999984 333221 101 1122 334 6789999998 4778899987
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=149.18 Aligned_cols=226 Identities=16% Similarity=0.220 Sum_probs=134.6
Q ss_pred HHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc----C
Q 016668 116 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK----P 191 (385)
Q Consensus 116 ~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~----p 191 (385)
+.|.+++...+.... . .|...+...+++ +++++++|.+. .++++||++|+..++.++++ |
T Consensus 55 ~~v~~a~~~~~~~~~-~------~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~ggt~A~~~al~~~~~~~~~~ 118 (467)
T 1ax4_A 55 NAMSDHQWAAMITGD-E------AYAGSRNYYDLK----DKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKE 118 (467)
T ss_dssp CCEEHHHHHHHHTCC-C------CSSSCHHHHHHH----HHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcc-c------ccccCccHHHHH----HHHHHHcCCCc-----EEEcCCcHHHHHHHHHHHHHhhccC
Confidence 566666655543211 1 133334444554 46788888753 35667789999999999988 9
Q ss_pred CCE---EeecCCCCCccccCCccccccccccCcceEEEEecc--ccC-----CCCCCCHHHHHHHhhhc---CCcEEEEc
Q 016668 192 HDR---IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR--LDE-----STGLVDYDMLEKTAILF---RPKLIIAG 258 (385)
Q Consensus 192 GD~---Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~--~~~-----~~~~iD~d~le~~i~~~---~pklIi~~ 258 (385)
||+ |++..+.++... ..+...|..+...+.. ++. .++.+|+++|++.+++. ++++|+++
T Consensus 119 Gd~~~~viv~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~ 190 (467)
T 1ax4_A 119 GKAKNPVFISNFHFDTTA--------AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVST 190 (467)
T ss_dssp TCCSSCEEEESSCCHHHH--------HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEE
T ss_pred CCccceEEEeccccchhh--------HHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEe
Confidence 998 887632111111 1233445433322211 111 14579999999999752 57899887
Q ss_pred CCCCCC---CC---CHHHHHHHHHHcCcEEEEeccccc-ccc--------ccCcccCCC-----CCCcEEEECCCccCcc
Q 016668 259 ASAYPR---DF---DYPRMRQIADAVGALLMMDMAHIS-GLV--------AASVVADPF-----KYCDVVTTTTHKSLRG 318 (385)
Q Consensus 259 ~s~~~~---~~---dl~~I~~ia~~~ga~livD~ah~~-Gli--------~~g~~~~p~-----~gaDiv~~S~hK~l~G 318 (385)
+++++. .. ++++|+++|+++|++||+|++|.. |.. ..+.....+ .++|++++|+||++..
T Consensus 191 ~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~ 270 (467)
T 1ax4_A 191 VTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL 270 (467)
T ss_dssp SSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCC
T ss_pred ccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCC
Confidence 766543 33 478999999999999999999765 221 112100001 2478899999999865
Q ss_pred ccEEEEEEeCCCCchhHHHHHHhhcc--CCC--ccCCChHHHHHHHHHHHHHhhC
Q 016668 319 PRGGMIFFKKDPVLGVELESAINNAV--FPG--LQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 319 prgG~I~~~~~~~~~~~~~~~i~~~~--fp~--~qg~p~~~~iaala~Al~e~~~ 369 (385)
|.||+++++++. ++.+++.... +.+ ..++.....+++++.+++++..
T Consensus 271 ~~Gg~~~~~d~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 321 (467)
T 1ax4_A 271 NIGGLVAIRDNE----EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE 321 (467)
T ss_dssp SSCEEEEESSCH----HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC
T ss_pred CcceEEEeCCHH----HHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh
Confidence 668888887320 1333332111 111 2234444556666667776654
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=149.60 Aligned_cols=231 Identities=13% Similarity=0.043 Sum_probs=143.5
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccccCCCC-----CcHHHHHHHh--hHhhcc-CCCCCCCCCCCCCcHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELIASENF-----TSRAVMEAVG--SCLTNK-YSEGLPGKRYYGGNEYIDELETL 152 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~-----~s~~V~~al~--s~l~~~-y~~g~p~~r~~~G~~~~~~le~~ 152 (385)
.+++++.+.++..+.+...+ ...++|-.+..- +++.+++++. ..+.+. ...+||+. ..|.+ +++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~--~~g~~---~lr-- 76 (423)
T 3ez1_A 5 EASRPALDLARQAYEAFKAR-GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGG--VAGLP---SAR-- 76 (423)
T ss_dssp -CCHHHHHHHHHHHHHHHHH-TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSC--TTCCH---HHH--
T ss_pred HHHHHHHHHHHHHHHHhhcC-CceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCC--CCChH---HHH--
Confidence 35666777888777665443 244566533222 4556777764 332211 11234221 12333 444
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCc-HHHHH--HHHHHhcc--C---------CCEEeecCCCCCccccCCccccccccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSG-SPANF--EVYTAILK--P---------HDRIMGLDLPHGGHLSHGFMTPKRRVS 218 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~--~a~~all~--p---------GD~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (385)
+.++++++++.+ +|.+++| ++|+. .++.++++ | ||+|++.+|.|.++.. .+.
T Consensus 77 --~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~ 142 (423)
T 3ez1_A 77 --ALFAGYLDVKAE----NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL--------LLQ 142 (423)
T ss_dssp --HHHHHHTTSCGG----GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH--------HHH
T ss_pred --HHHHHHhCCChh----hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH--------HHH
Confidence 457788898864 3455555 56887 78888888 8 5999999987654421 234
Q ss_pred cCcceEEEEeccccCCCCCCCHHHHHHHhh-hcCCcEEEEc-CCCCC--CCCCHH---HHHHHH-HHcCcEEEEeccccc
Q 016668 219 GTSIYFESMPYRLDESTGLVDYDMLEKTAI-LFRPKLIIAG-ASAYP--RDFDYP---RMRQIA-DAVGALLMMDMAHIS 290 (385)
Q Consensus 219 ~~g~~~~~i~~~~~~~~~~iD~d~le~~i~-~~~pklIi~~-~s~~~--~~~dl~---~I~~ia-~~~ga~livD~ah~~ 290 (385)
..|..+..++ ++++ .+|+++|++.++ ..++|+|++. .++|| ...+.+ +|.++| +++|+++|+|++|..
T Consensus 143 ~~g~~~~~v~--~~~~--g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~ 218 (423)
T 3ez1_A 143 TLGFELLTVD--MQSD--GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV 218 (423)
T ss_dssp HHTCEEEEEE--EETT--EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSS
T ss_pred HcCCEEEecc--CCCC--CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcch
Confidence 5566544444 5532 399999999985 3468888754 45555 556655 888888 899999999999853
Q ss_pred ccccc-Cc--ccCCC------C--CCcEEEECCCcc-CccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 291 GLVAA-SV--VADPF------K--YCDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 291 Gli~~-g~--~~~p~------~--gaDiv~~S~hK~-l~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
..... +. ..+.+ + +.++++.|+||+ ++|+|.|+++.++ ++.+.+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~------~~~~~~~~~ 277 (423)
T 3ez1_A 219 HHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE------DNIRWLSKY 277 (423)
T ss_dssp CBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH------HHHHHHHHH
T ss_pred hhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH------HHHHHHHHH
Confidence 22222 11 11111 1 345889999996 4788999999987 566666544
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=144.44 Aligned_cols=222 Identities=13% Similarity=0.081 Sum_probs=131.1
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
.+|.|.+++...+.. +. +.. +.+ ..+...+ .++++++++|.+. .++++||++|+..++.++.
T Consensus 82 ~~p~v~~ai~~~~~~-~~--~~~-~~~-~~~~~~~----l~~~la~~~g~~~-----v~~~~sGseA~~~al~~a~~~~~ 147 (433)
T 1z7d_A 82 CHPNILNAMINQAKN-LT--ICS-RAF-FSVPLGI----CERYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY 147 (433)
T ss_dssp TCHHHHHHHHHHHTT-CS--CCC-TTS-EEHHHHH----HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-CC--Ccc-CCc-CCHHHHH----HHHHHHhhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 679999999887643 22 111 112 2332333 3456788888543 3567789999999988753
Q ss_pred -----cCC-CEEeecCCCCCccccCCccccccccccCcce----------EEEEeccccCCCCCCCHHHHHHHhhhcCCc
Q 016668 190 -----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY----------FESMPYRLDESTGLVDYDMLEKTAILFRPK 253 (385)
Q Consensus 190 -----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~----------~~~i~~~~~~~~~~iD~d~le~~i~~~~pk 253 (385)
+|| |+|++.++.+.|.... .+...+.. ..+..++ ..|+++|++.++..+++
T Consensus 148 ~~~g~~~gr~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~p~~~~v~~~~------~~d~~~le~~l~~~~~~ 214 (433)
T 1z7d_A 148 EVKKIPENMAKIVVCKNNFSGRTLG-------CISASTTKKCTSNFGPFAPQFSKVP------YDDLEALEEELKDPNVC 214 (433)
T ss_dssp HTSCCCTTCCEEEEETTC---------------------------------CEEEEC------TTCHHHHHHHHTSTTEE
T ss_pred hccCCCCCCCeEEEEeCCcCCcchh-------hhcccCCccccccCCCCCCCeEEeC------CCCHHHHHHHhCCCCEE
Confidence 478 9999998765432110 11122210 0111211 14899999998434678
Q ss_pred EEEEcCCC--CCCCC----CHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-c-ccEE
Q 016668 254 LIIAGASA--YPRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-G-PRGG 322 (385)
Q Consensus 254 lIi~~~s~--~~~~~----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-G-prgG 322 (385)
+|++++.+ .|... ++++|+++|+++|++||+|++|. |+...|... ..+. ..|++ |++|+|. | .++|
T Consensus 215 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G 291 (433)
T 1z7d_A 215 AFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPIS 291 (433)
T ss_dssp EEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCE
T ss_pred EEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeE
Confidence 88887542 23332 79999999999999999999994 654333211 1122 46876 5679985 4 5889
Q ss_pred EEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++++++ ++.+.+......... +.+....++...+|+.+.++++
T Consensus 292 ~v~~~~------~~~~~l~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~ 334 (433)
T 1z7d_A 292 AVLAND------DIMLVIKPGEHGSTY-GGNPLAASICVEALNVLINEKL 334 (433)
T ss_dssp EEEECH------HHHTTCCTTCCCCTT-TTCHHHHHHHHHHHHHHHHTTH
T ss_pred EEEECH------HHHhhhccccccccC-CCCHHHHHHHHHHHHHHHhccH
Confidence 999987 566655443222223 2344455555557766544444
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-15 Score=142.85 Aligned_cols=214 Identities=15% Similarity=0.091 Sum_probs=137.6
Q ss_pred cccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC---CCCCCCcceeecCC-cH
Q 016668 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN---LDENKWGVNVQPLS-GS 178 (385)
Q Consensus 105 l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg---~~~~~~~~~V~~~s-Gs 178 (385)
++|...++ .+++.|.+++...+......+|+.. +. .+++ +.++++++ ++.+ +|.+++ |+
T Consensus 22 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----~~---~~lr----~~la~~~~~~~~~~~----~v~~~~G~~ 86 (335)
T 1uu1_A 22 TYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDS----PD---EELI----EKILSYLDTDFLSKN----NVSVGNGAD 86 (335)
T ss_dssp EEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCS----SC---HHHH----HHHHHHHTCSSCCGG----GEEEESSHH
T ss_pred eECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC----ch---HHHH----HHHHHHcCCCCCCHH----HEEEcCChH
Confidence 55655555 3589999998876632222344431 22 2444 45777888 6653 344455 56
Q ss_pred HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 016668 179 PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (385)
Q Consensus 179 ~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~ 258 (385)
+|+..++.++ ||+|++. |.|.++.. .+...|..+ +.++++ +++.+|++++ .++|+|++.
T Consensus 87 ~al~~~~~~~---gd~Vl~~-p~y~~~~~--------~~~~~g~~~--~~v~~~-~~~~~d~~~l------~~~~~v~l~ 145 (335)
T 1uu1_A 87 EIIYVMMLMF---DRSVFFP-PTYSCYRI--------FAKAVGAKF--LEVPLT-KDLRIPEVNV------GEGDVVFIP 145 (335)
T ss_dssp HHHHHHHHHS---SEEEECS-SSCHHHHH--------HHHHHTCEE--EECCCC-TTSCCCCCCC------CTTEEEEEE
T ss_pred HHHHHHHHHh---CCcEEEC-CCcHHHHH--------HHHHcCCeE--EEeccC-CCCCCCHHHc------CCCCEEEEe
Confidence 7998888887 9999998 87655421 233456544 444454 2456787766 268999877
Q ss_pred CCCCC--CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccC--ccccEEEEEEeCCCCc
Q 016668 259 ASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDPVL 332 (385)
Q Consensus 259 ~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l--~GprgG~I~~~~~~~~ 332 (385)
.++|| ...+.+++.++++.+| ++++|++|. ++.... ....++ +.+++++|+||++ +|.|.|++++++
T Consensus 146 ~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~-~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~---- 218 (335)
T 1uu1_A 146 NPNNPTGHVFEREEIERILKTGA-FVALDEAYY-EFHGES-YVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE---- 218 (335)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTH-HHHCCC-CGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECH----
T ss_pred CCCCCCCCCCCHHHHHHHHHhCC-EEEEECcch-hhcchh-HHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCH----
Confidence 66665 6789999999999999 999999985 332211 111122 3568999999997 577889999976
Q ss_pred hhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 333 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
++.+.+.....+. +++....++...+++.
T Consensus 219 --~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~ 247 (335)
T 1uu1_A 219 --KFIDAYNRVRLPF---NVSYVSQMFAKVALDH 247 (335)
T ss_dssp --HHHHHHHHHSCTT---CSCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHhcCCC---CcCHHHHHHHHHHhCC
Confidence 6777776544332 4555556666666654
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=151.51 Aligned_cols=190 Identities=16% Similarity=0.193 Sum_probs=118.4
Q ss_pred HHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccC----
Q 016668 116 RAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP---- 191 (385)
Q Consensus 116 ~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~p---- 191 (385)
+.|++++...+.. |. ..|+..+...+++ +++++++|.+. .++++|||+|+..++.+++++
T Consensus 53 ~~v~~a~~~~l~~----~~---~~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~~gt~A~~~al~~~~~~~~~~ 116 (467)
T 2oqx_A 53 GAVTQSMQAAMMR----GD---EAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQE 116 (467)
T ss_dssp SCCCHHHHHHTTS----CC---CCSSSCHHHHHHH----HHHHHHHCCSE-----EEEEC--CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc----Cc---ceeccCchhHHHH----HHHHHHhCcCc-----EEEcCCcHHHHHHHHHHHhcccccc
Confidence 7788887766532 11 1233344444554 46788888754 356778899999999999988
Q ss_pred -C----CEEeecCCCCCccccCCccccccccccCcceEEEE----ecccc---CCCCCCCHHHHHHHhhh---cCCcEEE
Q 016668 192 -H----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM----PYRLD---ESTGLVDYDMLEKTAIL---FRPKLII 256 (385)
Q Consensus 192 -G----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i----~~~~~---~~~~~iD~d~le~~i~~---~~pklIi 256 (385)
| |+|++. ..|+. ++. ......+...... +++.+ +.++.+|+++|++.+++ .++++|+
T Consensus 117 ~G~~~~d~Ii~~-~~h~~--t~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi 188 (467)
T 2oqx_A 117 KGLDRSKMVAFS-NYFFD--TTQ-----GHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIV 188 (467)
T ss_dssp HCCCTTTCEEEE-SSCCH--HHH-----HHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEE
T ss_pred CCCCccceEEec-ccccc--cch-----hhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEE
Confidence 9 997765 33321 000 0011122211111 11111 13467899999999974 3688998
Q ss_pred EcCCCCC---CCC---CHHHHHHHHHHcCcEEEEeccccc-cc--------cccCcccCCC-----CCCcEEEECCCccC
Q 016668 257 AGASAYP---RDF---DYPRMRQIADAVGALLMMDMAHIS-GL--------VAASVVADPF-----KYCDVVTTTTHKSL 316 (385)
Q Consensus 257 ~~~s~~~---~~~---dl~~I~~ia~~~ga~livD~ah~~-Gl--------i~~g~~~~p~-----~gaDiv~~S~hK~l 316 (385)
+++++++ ... ++++|+++|+++|++||+|++|.. +. ...|.....+ .++|++++|+||++
T Consensus 189 ~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~ 268 (467)
T 2oqx_A 189 ATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDA 268 (467)
T ss_dssp EESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTT
T ss_pred EeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEeccccc
Confidence 8776654 333 478999999999999999998866 33 1222211111 24788899999999
Q ss_pred ccccEEEEEEeCC
Q 016668 317 RGPRGGMIFFKKD 329 (385)
Q Consensus 317 ~GprgG~I~~~~~ 329 (385)
..|.||+++++++
T Consensus 269 g~~~Gg~~~~~~~ 281 (467)
T 2oqx_A 269 MVPMGGLLCMKDD 281 (467)
T ss_dssp CCSSCEEEEECSG
T ss_pred CCCCceEEEecCh
Confidence 7677888888763
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.2e-16 Score=154.37 Aligned_cols=212 Identities=13% Similarity=0.077 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccC----CCEEeecCCCCCccccCCccccccccccCcce
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKP----HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY 223 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~p----GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~ 223 (385)
.-+.++.+|++.+ |++.. + ..+.+.++|.++++++++.+++ ||+|+++.- .|.|. .+.+.+.|..
T Consensus 117 ltn~l~ld~L~~~-G~~~~-~-~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn---~HKSv-----~kAliL~Gl~ 185 (501)
T 3hl2_A 117 ITNSLVLDIIKLA-GVHTV-A-NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI---DQKSC-----FKSMITAGFE 185 (501)
T ss_dssp HHHHHHHHHHHHT-TCTTC-C-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECC---CCHHH-----HHHHHHTTCE
T ss_pred HHHHHHHHHHHHc-CCCCC-C-cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecc---hHHHH-----HHHHHHcCCe
Confidence 3445666777776 99863 2 2333444455888888887774 499999764 45442 1356788887
Q ss_pred EEEEeccccCCCCCCCHHHHHHHhhhcCCc--EEE-EcCCCC-C-CCCCHHHHHHHHHHcCcEEEEeccccccccccCcc
Q 016668 224 FESMPYRLDESTGLVDYDMLEKTAILFRPK--LII-AGASAY-P-RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 224 ~~~i~~~~~~~~~~iD~d~le~~i~~~~pk--lIi-~~~s~~-~-~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~ 298 (385)
..+++..++++...+|+++++++++++.++ +++ ...+.| | ...|+++|+++|+++|+++++|+||+..+.+...+
T Consensus 186 Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~l 265 (501)
T 3hl2_A 186 PVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHL 265 (501)
T ss_dssp EEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHH
T ss_pred EEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhh
Confidence 777765555455689999999999875433 333 344455 4 44799999999999999999999998765432222
Q ss_pred c-CCCC-C-CcEEEECCCccCccccEE-EEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 299 A-DPFK-Y-CDVVTTTTHKSLRGPRGG-MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 299 ~-~p~~-g-aDiv~~S~hK~l~GprgG-~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
+ +.++ | +|+++.|+||++..|-|| +++.+++ ++.+++. ..+|+.+++. ..+.+-.+++.+-...|++
T Consensus 266 p~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~-----e~l~~~~-~~yPGr~S~S---psldl~~tLL~lGr~Gy~~ 336 (501)
T 3hl2_A 266 IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND-----SFIQEIS-KMYPGRASAS---PSLDVLITLLSLGSNGYKK 336 (501)
T ss_dssp HHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHH-HTSCSCBCSH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcEEEecccccceeecCceEEEeCCH-----HHHHHHH-HhCCCCCCCc---HHHHHHHHHHHHHHHHHHH
Confidence 2 3344 6 999999999999888655 5556665 6777763 4677766421 1222333444444444444
Q ss_pred HHHHH
Q 016668 375 YQNKS 379 (385)
Q Consensus 375 y~~~v 379 (385)
..++-
T Consensus 337 ll~e~ 341 (501)
T 3hl2_A 337 LLKER 341 (501)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=144.36 Aligned_cols=219 Identities=16% Similarity=0.134 Sum_probs=134.5
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
.+|.|.+++...+.. +.. .... + ..+ +....++++++++|.+. .++++||++|+..++.++.+
T Consensus 74 ~~p~v~~ai~~~~~~-~~~--~~~~-~-~~~----~~~~l~~~la~~~g~~~-----v~~~~ggteA~~~al~~~~~~~~ 139 (420)
T 2pb2_A 74 CHPALVEALKSQGET-LWH--TSNV-F-TNE----PALRLGRKLIDATFAER-----VLFMNSGTEANETAFKLARHYAC 139 (420)
T ss_dssp TCHHHHHHHHHHHTT-CCC--CCTT-S-CCH----HHHHHHHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccc--ccCc-c-CCH----HHHHHHHHHHhhCCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 479999999877643 322 1111 2 223 33334567888888543 35667889999999998865
Q ss_pred ----CCC-EEeecCCCCCccccCCccccccccccCcce------------EEEEeccccCCCCCCCHHHHHHHhhhcCCc
Q 016668 191 ----PHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIY------------FESMPYRLDESTGLVDYDMLEKTAILFRPK 253 (385)
Q Consensus 191 ----pGD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~------------~~~i~~~~~~~~~~iD~d~le~~i~~~~pk 253 (385)
+|+ +|++.++.+.+... . .+...|.. +..++ ..|+++|++.+++ +++
T Consensus 140 ~~~~~g~~~vi~~~~~yh~~~~-~------~~~~~g~~~~~~~~~p~~~~~~~~~--------~~d~~~le~~i~~-~~~ 203 (420)
T 2pb2_A 140 VRHSPFKTKIIAFHNAFHGRSL-F------TVSVGGQPKYSDGFGPKPADIIHVP--------FNDLHAVKAVMDD-HTC 203 (420)
T ss_dssp HHTCTTCCEEEEETTCCCCSSH-H------HHHHSSCHHHHTTSSSCCSCEEEEC--------TTCHHHHHHHCCT-TEE
T ss_pred hccCCCCCEEEEEeCCcCCcCH-H------HHHhcCCccccccCCCCCCCeEEec--------CCCHHHHHHHhcc-Cce
Confidence 784 89998876533211 0 11122211 22222 1389999999864 789
Q ss_pred EEEEcCCCCC--C----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccEEE
Q 016668 254 LIIAGASAYP--R----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGM 323 (385)
Q Consensus 254 lIi~~~s~~~--~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-GprgG~ 323 (385)
+|++++++++ . ..++++|+++|+++|++||+|++| .|+...|... ..++ ..|++ |++|+|. |.+.|+
T Consensus 204 ~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~-~g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~iG~ 280 (420)
T 2pb2_A 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQ-CGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPVSA 280 (420)
T ss_dssp EEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEE
T ss_pred EEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCC-cCcccCCcHHHHHhcCCCCCeE--EecccccCCCceEE
Confidence 9988765432 1 246899999999999999999999 5764434211 1122 46877 4579984 567888
Q ss_pred EEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 324 IFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 324 I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+++++ ++.+.+......... +.+....++...+|+.+..+++
T Consensus 281 ~~~~~------~l~~~l~~~~~~~t~-~~~~~~~aa~~a~L~~~~~~~~ 322 (420)
T 2pb2_A 281 MLTTQ------EIASAFHVGSHGSTY-GGNPLACAVAGAAFDIINTPEV 322 (420)
T ss_dssp EEECH------HHHTTCC----CCEE-CCCHHHHHHHHHHHHHHSSHHH
T ss_pred EEEhH------HHHHhhcCCCcCccc-CcCHHHHHHHHHHHHHHHhccH
Confidence 88876 555555432122222 2344555555667776655444
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=144.27 Aligned_cols=181 Identities=13% Similarity=0.033 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCC-----EEeec-CCCCCccccCCcccccccc-cc
Q 016668 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD-----RIMGL-DLPHGGHLSHGFMTPKRRV-SG 219 (385)
Q Consensus 147 ~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD-----~Vl~~-~~~~ggh~s~~~~~~~~~~-~~ 219 (385)
.++++.+++++.+.+|...+ ..-.+.+++|++|+..++.++++||| +|+++ +|.|.++..... .. ..
T Consensus 78 ~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~-----~~~~~ 151 (417)
T 3g7q_A 78 TALLNALAVLLRETLGWDIE-PQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGL-----EDDLF 151 (417)
T ss_dssp HHHHHHHHHHHHHHHCCCCC-GGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC----------CCE
T ss_pred HHHHHHHHHHHHHHhCCCCC-cccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhcc-----chhhh
Confidence 37777777777777775431 11234445566799999999999988 89987 777655432110 00 01
Q ss_pred CcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEecccccccc-
Q 016668 220 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLV- 293 (385)
Q Consensus 220 ~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli- 293 (385)
.+....+.+++.+..++.+|+++++ +. .++++|++..++|| ...+ +++|.++|+++|+++|+|++|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~l~--~~-~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~ 228 (417)
T 3g7q_A 152 VSARPNIELLPEGQFKYHVDFEHLH--IG-EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPG 228 (417)
T ss_dssp EECCCEEEEEGGGEEEEECCGGGCC--CC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTC
T ss_pred ccccCcccccCCcccccccCHHHhc--cc-cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccc
Confidence 1122233333222113468888887 43 36888888777765 4566 88999999999999999999853211
Q ss_pred --ccCcccCCCCCCcEEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 294 --AASVVADPFKYCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 294 --~~g~~~~p~~gaDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
..+..+ ...+.++++.|+||++ +|.|.|++++++ ++.+.+...
T Consensus 229 ~~~~~~~~-~~~~~~i~~~s~sK~~~~G~r~G~~~~~~------~~~~~~~~~ 274 (417)
T 3g7q_A 229 IIFSEARP-LWNPNIILCMSLSKLGLPGSRCGIIIAND------KTITAIANM 274 (417)
T ss_dssp CBCSCCCC-CCCTTEEEEEESGGGTCTTSCCEEEECCH------HHHHHHHHH
T ss_pred cccccccc-CCCCCEEEEEechhccCCCcceEEEEeCH------HHHHHHHHh
Confidence 111111 0124568899999964 667889998876 576666543
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=144.44 Aligned_cols=228 Identities=15% Similarity=0.153 Sum_probs=144.8
Q ss_pred cccCCh-HHHHHHHHHHHHhhhccccccC-------CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHH
Q 016668 83 LGEADP-EVCEIITKEKERQFKSLELIAS-------ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (385)
Q Consensus 83 l~~~dp-~~~~~i~~e~~~~~~~l~Lias-------en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~ 154 (385)
+...+| .++.+.++-+......++|--+ ..+..+.|++|....+.+....+|.. ..|.+ ++.+.++
T Consensus 24 v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p---~~G~p---~lr~aia 97 (420)
T 4h51_A 24 IQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLP---ISGYQ---PFIDEAV 97 (420)
T ss_dssp CCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCC---TTCCH---HHHHHHH
T ss_pred CCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCC---cCChH---HHHHHHH
Confidence 555555 5677665543322234666522 23456899999876666555556765 45766 6766554
Q ss_pred HHHHHHcCCCCC-CCcceeecCCcHHHHHHHHHH----hccCCCEEeecCCCCCccccCCccccccccccCcce-EEEEe
Q 016668 155 KRALAAFNLDEN-KWGVNVQPLSGSPANFEVYTA----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMP 228 (385)
Q Consensus 155 ~~la~lfg~~~~-~~~~~V~~~sGs~A~~~a~~a----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~i~ 228 (385)
++ +||-... +....+++.+||.|+..++.. +++|||+|++++|.++.|.. .+...|.. +...+
T Consensus 98 ~~---~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~--------i~~~aG~~~V~~~~ 166 (420)
T 4h51_A 98 KI---IYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYG--------VVKAAGWKNICTYA 166 (420)
T ss_dssp HH---HHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHH--------HHHHTTCCCEEEEE
T ss_pred HH---hcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHH--------HHHHcCCeEEEeec
Confidence 43 3454321 111345667788777655543 46899999999998766532 33456654 33333
Q ss_pred ccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCCC-----CCHHHHHHHHHHcCcEEEEeccccccccccCcccCC
Q 016668 229 YRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPRD-----FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP 301 (385)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~~~~-----~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p 301 (385)
+ .++++..+|.+.+.+.++.. +.++++.+.++||+- .++++|.++|+++++++++|+++ .|+..++....+
T Consensus 167 ~-~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y-~~~~~~~~~~~~ 244 (420)
T 4h51_A 167 Y-YDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAY-QGYASGSLDTDA 244 (420)
T ss_dssp C-EEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTTTTSCHHHHT
T ss_pred c-ccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhh-hhhccCCcccch
Confidence 3 34456678999988877543 345677777888742 24789999999999999999996 677654422111
Q ss_pred C------C-CCc-EEEECCCccC--ccccEEEEEEeCC
Q 016668 302 F------K-YCD-VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 302 ~------~-gaD-iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
+ + +.. +++.|++|++ +|+|.|++.+..+
T Consensus 245 ~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~ 282 (420)
T 4h51_A 245 YAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLK 282 (420)
T ss_dssp HHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred HHHHhHHhhCceEEEEeccccccccccCceEEEEeccc
Confidence 1 1 222 6789999985 8999999988776
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-14 Score=138.36 Aligned_cols=222 Identities=16% Similarity=0.150 Sum_probs=131.2
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHH---hc-
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA---IL- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~a---ll- 189 (385)
+++.+++++...+... +.+..+| ..+...++ ++++++++|++ + ..+.+++|++|+..++.+ +.
T Consensus 45 ~~~~v~~a~~~~~~~~---~~~~~~y--~~~~~~~l----~~~la~~~g~~-~---~v~~~~g~t~a~~~~~~~~~~~~~ 111 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKL---LHVSNLY--ENPWQEEL----AHKLVKHFWTE-G---KVFFANSGTESVEAAIKLARKYWR 111 (375)
T ss_dssp SCHHHHHHHHHHHHHC---SCCCTTB--CCHHHHHH----HHHHHHTSSSC-E---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc---cccCccc--CCHHHHHH----HHHHHhhcCCC-C---eEEEeCchHHHHHHHHHHHHHHhc
Confidence 6899999998776532 1222223 12323333 45788889983 2 135566778899988865 35
Q ss_pred --cCC-CEEeecCCCCCccccCCccccccccccCcce-----EEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 190 --KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----FESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 190 --~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
+|| |+|++.++.+.++...............+.. +..++ .+|+++|++.+++ ++++|++++++
T Consensus 112 ~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~l~~~l~~-~~~~v~~~~~~ 182 (375)
T 2eh6_A 112 DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAK--------LNDIDSVYKLLDE-ETAGIIIEVIQ 182 (375)
T ss_dssp HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEEC--------TTCHHHHHTTCCT-TEEEEEECSEE
T ss_pred cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCC--------CchHHHHHHHhcC-CeEEEEEeCcc
Confidence 789 9999999875443210000000000000100 11111 2589999998864 78999987765
Q ss_pred CC--CCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccEEEEEEeCCCC
Q 016668 262 YP--RDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPV 331 (385)
Q Consensus 262 ~~--~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-GprgG~I~~~~~~~ 331 (385)
++ ...+ +++|.++|+++|+++++|++|. |+...+... ..+. ..|++++| |++. |++.|++++++
T Consensus 183 ~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~--- 256 (375)
T 2eh6_A 183 GEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-GIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILARE--- 256 (375)
T ss_dssp TTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEH---
T ss_pred CCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcH---
Confidence 54 4446 9999999999999999999996 443222111 1112 37888655 9884 45679998887
Q ss_pred chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHh
Q 016668 332 LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 332 ~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~ 367 (385)
++.+++.........+.+.....++ ..+|+..
T Consensus 257 ---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 288 (375)
T 2eh6_A 257 ---EVAQSFTPGSHGSTFGGNPLACRAG-TVVVDEV 288 (375)
T ss_dssp ---HHHTTCCTTSCCCSSTTCHHHHHHH-HHHHHHH
T ss_pred ---HHHhhhcCCCCCCCCCCCHHHHHHH-HHHHHHH
Confidence 5666665432223334433333333 4456544
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=143.55 Aligned_cols=166 Identities=13% Similarity=-0.010 Sum_probs=114.1
Q ss_pred HHHHHHcCCCCCCCcceeecCCcH-HHH--HHHHHHhcc--C----------CCEEeecCCCCCccccCCcccccccccc
Q 016668 155 KRALAAFNLDENKWGVNVQPLSGS-PAN--FEVYTAILK--P----------HDRIMGLDLPHGGHLSHGFMTPKRRVSG 219 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sGs-~A~--~~a~~all~--p----------GD~Vl~~~~~~ggh~s~~~~~~~~~~~~ 219 (385)
+.++++++++.+ +|.+++|+ +++ ..++.++++ | ||+|++.+|.|.++.. .+..
T Consensus 85 ~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~--------~~~~ 152 (427)
T 3ppl_A 85 QIWADLLGVPVE----QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS--------ITER 152 (427)
T ss_dssp HHHHHHHTSCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH--------HHHH
T ss_pred HHHHHHhCCCcc----eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH--------HHHH
Confidence 356777788764 45556554 587 378888877 7 9999999987655422 3445
Q ss_pred CcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCC--CCCCHH---HHHHHH-HHcCcEEEEeccccccc
Q 016668 220 TSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG-ASAYP--RDFDYP---RMRQIA-DAVGALLMMDMAHISGL 292 (385)
Q Consensus 220 ~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~-~s~~~--~~~dl~---~I~~ia-~~~ga~livD~ah~~Gl 292 (385)
.|..+..++ +++ ++ +|+++|++.++..++|+|++. .++|| ...+.+ +|.++| +++|+++|+|++|. ++
T Consensus 153 ~g~~~~~v~--~~~-~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~-~~ 227 (427)
T 3ppl_A 153 FGFEMISVP--MNE-DG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYA-VH 227 (427)
T ss_dssp TTCEEEEEE--EET-TE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTT-TC
T ss_pred cCCEEEEeC--CCC-CC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCc-cc
Confidence 676554444 553 34 999999999854578888865 44555 566665 888888 99999999999974 43
Q ss_pred cccCcccCC---C-------C-CCcEEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 293 VAASVVADP---F-------K-YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 293 i~~g~~~~p---~-------~-gaDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
.+.+....+ + . +.++++.|+||++ +|.|.|++++++ ++.+.+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~------~l~~~~~~~ 284 (427)
T 3ppl_A 228 TLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA------ENRKWYTGH 284 (427)
T ss_dssp BSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH------HHHHHHHHH
T ss_pred ccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH------HHHHHHHHH
Confidence 333321111 1 1 3458899999985 678999999887 566666543
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=142.38 Aligned_cols=232 Identities=15% Similarity=0.012 Sum_probs=136.5
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHH---Hhcc
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT---AILK 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~---all~ 190 (385)
.++.|++++...+.. +. +....++ ..+...+ .++.++++++.+..+ -.+++++|++|+..++. ++.+
T Consensus 58 ~~~~v~~a~~~~~~~-~~--~~~~~~~-~~~~~~~----l~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~a~~~~~ 127 (426)
T 1sff_A 58 LHPKVVAAVEAQLKK-LS--HTCFQVL-AYEPYLE----LCEIMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAATK 127 (426)
T ss_dssp TCHHHHHHHHHHTTT-CS--CCCTTTE-ECHHHHH----HHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh-CC--Ccccccc-CCHHHHH----HHHHHHHhCCccccc--EEEEeCchHHHHHHHHHHHHHhhC
Confidence 689999999877643 22 1111121 2232333 445688888322211 23555667789999987 6778
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcc-------------eEEEEeccccC--CCCCCCHHHHHHHhhh----cC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-------------YFESMPYRLDE--STGLVDYDMLEKTAIL----FR 251 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-------------~~~~i~~~~~~--~~~~iD~d~le~~i~~----~~ 251 (385)
+| +|++.++.+.+.... .+...|. .+..++++.+. .++.+|+++|++.++. .+
T Consensus 128 ~~-~vi~~~p~y~~~~~~-------~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 199 (426)
T 1sff_A 128 RS-GTIAFSGAYHGRTHY-------TLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPED 199 (426)
T ss_dssp CC-EEEEETTCCCCSSHH-------HHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGG
T ss_pred CC-eEEEECCCcCCCchH-------hhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCc
Confidence 87 788888765332110 1111221 13445543211 1234799999998863 35
Q ss_pred CcEEEEcC--CCCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccE
Q 016668 252 PKLIIAGA--SAYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRG 321 (385)
Q Consensus 252 pklIi~~~--s~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-Gprg 321 (385)
+++|++.+ ++.|...+ +++|.++|+++|++||+|++|. |+...|... ...+ ..|++ |++|+|. |.|.
T Consensus 200 ~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~~~Glri 276 (426)
T 1sff_A 200 IAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSIAGGFPL 276 (426)
T ss_dssp EEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGGGTSSCC
T ss_pred eEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccccCCCce
Confidence 77888754 23454556 9999999999999999999996 664433211 1112 35665 6679984 4566
Q ss_pred EEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
|++++++ ++.+.+......... +.+....++...+|+.+...++.
T Consensus 277 G~~~~~~------~~~~~l~~~~~~~~~-~~~~~~~~a~~aal~~~~~~~~~ 321 (426)
T 1sff_A 277 AGVTGRA------EVMDAVAPGGLGGTY-AGNPIACVAALEVLKVFEQENLL 321 (426)
T ss_dssp EEEEEEH------HHHTTSCTTSBCCSS-SSCHHHHHHHHHHHHHHHHTTHH
T ss_pred EEEEEcH------HHHhhhccCCcCcCC-CCCHHHHHHHHHHHHHHHhcCHH
Confidence 9999987 566655432222222 34555566666677765444443
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-14 Score=148.68 Aligned_cols=196 Identities=14% Similarity=0.109 Sum_probs=124.3
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC--CCCCcceeecCCcH-HHHHHHHHH--
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD--ENKWGVNVQPLSGS-PANFEVYTA-- 187 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~--~~~~~~~V~~~sGs-~A~~~a~~a-- 187 (385)
++++.+.+++...+.. .+||.. .++.+ ..+.+++.++.+.++.. .... .+|.+++|+ +|+..++.+
T Consensus 116 ~~~~~~~~al~~~~~~---~~Y~~~--~g~~~---lr~~ia~~~~~~~~~~~~~~~~~-~~I~~t~G~~eal~~~~~~l~ 186 (546)
T 2zy4_A 116 LDPAAFLHEMVDGILG---CNYPVP--PRMLN---ISEKIVRQYIIREMGADAIPSES-VNLFAVEGGTAAMAYIFESLK 186 (546)
T ss_dssp CCHHHHHHHHHHHHHT---CSCCSS--SSCCH---HHHHHHHHHHHHHTTCTTSCGGG-EEEEEEEHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhhhc---CCCCCC--cCCHH---HHHHHHHHHHHHhccCCCCCCCc-ceEEEECCHHHHHHHHHHHhh
Confidence 4566777777655531 345542 11222 23344555566665431 1001 256666665 588888877
Q ss_pred ---hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC-CCCCHHHHHHHhhhcCCcEEEEcCCCCC
Q 016668 188 ---ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST-GLVDYDMLEKTAILFRPKLIIAGASAYP 263 (385)
Q Consensus 188 ---ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~iD~d~le~~i~~~~pklIi~~~s~~~ 263 (385)
+++|||+|++.+|.|.++.. .+.+.+...++++++.++++ +.+|+++|++.+. .++|+|+++.++||
T Consensus 187 ~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~v~l~~p~NP 257 (546)
T 2zy4_A 187 LNGLLKAGDKVAIGMPVFTPYIE--------IPELAQYALEEVAINADPSLNWQYPDSELDKLKD-PAIKIFFCVNPSNP 257 (546)
T ss_dssp HTTSSCTTCEEEEEESCCHHHHH--------HHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-TTEEEEEEESSCSS
T ss_pred hhhcCCCCCEEEEeCCCCccHHH--------HHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-CCCeEEEEECCCCC
Confidence 57999999999997765432 11122222344444455433 4799999988764 37899988888876
Q ss_pred C--CCC---HHHHHHHH--HHcCcEEEEeccccccccccCcccCCCC---CCcEEEECCCccC--ccccEEEEEEeCC
Q 016668 264 R--DFD---YPRMRQIA--DAVGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 264 ~--~~d---l~~I~~ia--~~~ga~livD~ah~~Gli~~g~~~~p~~---gaDiv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
+ ..+ +++|.++| +++|++||+|++|. ++... .++.+. +.++++.|++|++ +|.|.|+++++++
T Consensus 258 tG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~-~~~~~--~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~ 332 (546)
T 2zy4_A 258 PSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG-TFADD--FQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQ 332 (546)
T ss_dssp SCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG-GGSTT--CCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESS
T ss_pred CCccCCHHHHHHHHHHHHhccCCcEEEEeCcch-hhccc--CcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCH
Confidence 3 444 67788888 78999999999985 33321 122111 3458899999997 6889999999885
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=142.21 Aligned_cols=218 Identities=15% Similarity=0.098 Sum_probs=134.6
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
.++.+.+++...+.. +.. ... .| ..+..++ .++++++++|.+. .+.++||++|+..++.++..
T Consensus 57 ~~~~v~~a~~~~~~~-~~~--~~~-~~-~~~~~~~----l~~~la~~~g~~~-----v~~~~gg~~a~~~al~~~~~~~~ 122 (397)
T 2ord_A 57 SHPRLVEAIKDQAEK-LIH--CSN-LF-WNRPQME----LAELLSKNTFGGK-----VFFANTGTEANEAAIKIARKYGK 122 (397)
T ss_dssp TCHHHHHHHHHHHHH-CSC--CCT-TS-EEHHHHH----HHHHHHHTTTSCE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccc--Ccc-cc-CCHHHHH----HHHHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 479999999887654 322 111 12 2333333 4557888888543 35677889999999988764
Q ss_pred ---C-CCEEeecCCCCCccccCCccccccccccCcce------------EEEEeccccCCCCCCCHHHHHHHhhhcCCcE
Q 016668 191 ---P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY------------FESMPYRLDESTGLVDYDMLEKTAILFRPKL 254 (385)
Q Consensus 191 ---p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~------------~~~i~~~~~~~~~~iD~d~le~~i~~~~pkl 254 (385)
| +|+|++.++.+.+... ..+...|.. +..++ . .|+++|++.+++ ++++
T Consensus 123 ~~~~~~~~vi~~~~~yh~~~~-------~~~~~~g~~~~~~~~~p~~~~~~~~~--~------~d~~~l~~~l~~-~~~~ 186 (397)
T 2ord_A 123 KKSEKKYRILSAHNSFHGRTL-------GSLTATGQPKYQKPFEPLVPGFEYFE--F------NNVEDLRRKMSE-DVCA 186 (397)
T ss_dssp HHCTTCCEEEEEBTCCCCSSH-------HHHHHSBCHHHHGGGCSCCTTEEEEC--T------TCHHHHHHHCCT-TEEE
T ss_pred cCCCCCceEEEEcCCcCCCch-------hhhhccCChhhccccCCCCCCeeEec--C------CCHHHHHHHhhc-CeEE
Confidence 5 4788888775532211 011223321 22222 1 389999999864 7899
Q ss_pred EEEcCCCCC--C----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccEEEE
Q 016668 255 IIAGASAYP--R----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMI 324 (385)
Q Consensus 255 Ii~~~s~~~--~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-GprgG~I 324 (385)
|+++++++| . ..++++|.++|+++|++|++|++|. |+...|... ..++ ..|++ |++|+|. |.+.|++
T Consensus 187 v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~ 263 (397)
T 2ord_A 187 VFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAV 263 (397)
T ss_dssp EEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEE
T ss_pred EEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCccchhhhhhCCCCCee--eeccccCCCcCeEEE
Confidence 999877665 3 2368999999999999999999995 665433211 1112 36876 5579985 5678999
Q ss_pred EEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 325 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+++++ +. .+......... +++....++...+|+.+..++.
T Consensus 264 ~~~~~------~~-~l~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~ 303 (397)
T 2ord_A 264 IVNER------AN-VLEPGDHGTTF-GGNPLACRAGVTVIKELTKEGF 303 (397)
T ss_dssp EECST------TC-CCCTTSSCCSS-TTCHHHHHHHHHHHHHHTSTTH
T ss_pred EEchH------hc-ccCCCCcCCCC-CCCHHHHHHHHHHHHHHHhCCH
Confidence 88874 33 33321111112 3455566666667776654333
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-14 Score=140.82 Aligned_cols=233 Identities=17% Similarity=0.082 Sum_probs=137.8
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc--
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK-- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G-~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~-- 190 (385)
.+|.|.+++...+.+ +. + .++..+ .+ +....+++++++++.+.+ ..++++||++|+..++.++..
T Consensus 67 ~~~~v~~a~~~~~~~-~~--~--~~~~~~~~~----~~~~l~~~la~~~~~~~~---~v~~~~ggsea~~~al~~~~~~~ 134 (449)
T 3a8u_X 67 TRKEIQEAVAKQLST-LD--Y--SPGFQYGHP----LSFQLAEKITDLTPGNLN---HVFFTDSGSECALTAVKMVRAYW 134 (449)
T ss_dssp SCHHHHHHHHHHTTT-CS--C--CCSSSCCCH----HHHHHHHHHHTTSSTTEE---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-CC--C--ccccccCCH----HHHHHHHHHHHhCCCCCC---EEEEcCcHHHHHHHHHHHHHHHH
Confidence 379999999877643 21 1 111112 23 222345678888876543 235567788999999988764
Q ss_pred ------CCCEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCC-C-CCCC--------HHH
Q 016668 191 ------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDES-T-GLVD--------YDM 242 (385)
Q Consensus 191 ------pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~-~-~~iD--------~d~ 242 (385)
+||+|++.++.+.+.... .+...| ..+..++++.... . ..+| +++
T Consensus 135 ~~~g~~~~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~ 207 (449)
T 3a8u_X 135 RLKGQATKTKMIGRARGYHGVNIA-------GTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207 (449)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHH-------HHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCcCCCChh-------hhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHH
Confidence 789999988765432110 111111 1234444322100 0 0146 999
Q ss_pred HHHHhhh---cCCcEEEEcCCC--CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEE
Q 016668 243 LEKTAIL---FRPKLIIAGASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTT 310 (385)
Q Consensus 243 le~~i~~---~~pklIi~~~s~--~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~ 310 (385)
|++.+++ .++++|++++.+ .|...+ +++|+++|+++|++||+|++|. |+...|.. . ..+. ..|++
T Consensus 208 le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~di~-- 284 (449)
T 3a8u_X 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVIT-GFGRTGSMFGADSFGVTPDLM-- 284 (449)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--
T ss_pred HHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccCcchhhhhcCCCCCEE--
Confidence 9998864 246778776543 355567 9999999999999999999994 33222211 1 1112 35776
Q ss_pred CCCccCcc--ccEEEEEEeCCCCchhHHHHHHhhcc--------CCCccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 311 TTHKSLRG--PRGGMIFFKKDPVLGVELESAINNAV--------FPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 311 S~hK~l~G--prgG~I~~~~~~~~~~~~~~~i~~~~--------fp~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
|++|+|.| .+.|++++++ ++.+.+.... ..+..-+.+...+++...+++.+.++++.+
T Consensus 285 s~sK~l~~G~~~~G~~~~~~------~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~ 352 (449)
T 3a8u_X 285 CIAKQVTNGAIPMGAVIAST------EIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQ 352 (449)
T ss_dssp EECGGGGTTSSCCEEEEEEH------HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHH
T ss_pred EEcccccCCCCceEEEEECH------HHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHH
Confidence 55699965 6788888887 6777776531 111122344555666666777655444433
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=9e-14 Score=138.92 Aligned_cols=226 Identities=15% Similarity=0.082 Sum_probs=131.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc--C
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--P 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--p 191 (385)
.+|.|.+++...+......+|+. + .....+++++++++ +.+ -.++++|||+|+..++..+.. +
T Consensus 72 ~~p~v~~a~~~~~~~~~~~~~~~-------~----~~~~l~~~la~~~~-~~~---~v~~~~sGsea~~~ai~~a~~~~~ 136 (434)
T 3l44_A 72 AHPHITKAITTAAENGVLYGTPT-------A----LEVKFAKMLKEAMP-ALD---KVRFVNSGTEAVMTTIRVARAYTG 136 (434)
T ss_dssp TCHHHHHHHHHHHHHCSCCSSCC-------H----HHHHHHHHHHHHCT-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCcCCCCCC-------H----HHHHHHHHHHHhCC-CCC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 48999999887775432222222 2 22223456888886 332 245667899999999987754 7
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCC-------------CCHHHHHHHhhh--cCCcEEE
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDMLEKTAIL--FRPKLII 256 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~-------------iD~d~le~~i~~--~~pklIi 256 (385)
+|+|++.++.+.|+... .+...|.......++. ..+. .|+++|++.+++ .++++|+
T Consensus 137 ~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 207 (434)
T 3l44_A 137 RTKIMKFAGCYHGHSDL-------VLVAAGSGPSTLGTPD--SAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAIL 207 (434)
T ss_dssp CCEEEEETTCCCCSSGG-------GGBC-------CCCBS--STTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEE
T ss_pred CCEEEEEcCccCCCcHH-------HHhhcCCcccccCCCC--cCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEE
Confidence 89999988765332110 1112221111111000 0111 289999998864 2456777
Q ss_pred EcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccEEEEEE
Q 016668 257 AGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRGGMIFF 326 (385)
Q Consensus 257 ~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~GprgG~I~~ 326 (385)
+++.+. +...+ +++|+++|+++|++||+|++| .|+ ..|... ..+. ..|+++ ++|++ +|++.|++++
T Consensus 208 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~-~g~-~~g~~~~~~~~~~~~di~t--~sK~~~~G~~iG~~~~ 283 (434)
T 3l44_A 208 VEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVI-TAF-RFMYGGAQDLLGVTPDLTA--LGKVIGGGLPIGAYGG 283 (434)
T ss_dssp ECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTT-TTT-TSSSSCHHHHHTCCCSEEE--EEGGGGTTSSCEEEEE
T ss_pred EcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cce-eccccHHHHHcCCCCCeee--hhhhhcCCcCeeeEEE
Confidence 765432 33444 999999999999999999998 455 333211 1112 346654 55988 5568898888
Q ss_pred eCCCCchhHHHHHHhhc--cCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 327 KKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 327 ~~~~~~~~~~~~~i~~~--~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
++ ++.+.+... .+.+...+.+....++..++++.+.++++.
T Consensus 284 ~~------~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~ 326 (434)
T 3l44_A 284 KK------EIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLY 326 (434)
T ss_dssp CH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHH
T ss_pred cH------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHH
Confidence 77 576666542 122222234555555656677766555553
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-14 Score=138.00 Aligned_cols=228 Identities=13% Similarity=0.102 Sum_probs=133.3
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
.+|.|.+++...+.. ...++. ++ ..+ ..+..++++++++|.+. .++++||++|+..++.++.
T Consensus 53 ~~p~v~~a~~~~~~~-~~~~~~--~~--~~~----~~~~l~~~la~~~~~~~-----v~~~~gg~ea~~~al~~~~~~~~ 118 (395)
T 3nx3_A 53 NHAKFNAKIKAQVDK-LLHTSN--LY--YNE----NIAAAAKNLAKASALER-----VFFTNSGTESIEGAMKTARKYAF 118 (395)
T ss_dssp SCHHHHHHHHHHHTT-CSCCCT--TS--BCH----HHHHHHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cccccc--cc--CCH----HHHHHHHHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 479999999877643 222221 11 233 33334567888888432 4667788999999988775
Q ss_pred ---cCCCEEeecCCCCCccccCCc-ccc---c-cccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 190 ---KPHDRIMGLDLPHGGHLSHGF-MTP---K-RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 190 ---~pGD~Vl~~~~~~ggh~s~~~-~~~---~-~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
.+||+|++.++.+.|...... ... . ......+..+..++ ..|+++|++.++. ++++|++.+++
T Consensus 119 ~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~l~~~l~~-~~~~v~~~~~~ 189 (395)
T 3nx3_A 119 NKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAK--------YNDISSVEKLVNE-KTCAIILESVQ 189 (395)
T ss_dssp HTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEEC--------TTCHHHHHTTCCT-TEEEEEEESEE
T ss_pred ccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeC--------CCCHHHHHHhccC-CeEEEEEeCcc
Confidence 458999999887643321000 000 0 00000111122222 2389999998864 67888876543
Q ss_pred C--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEECCCccC-ccccEEEEEEeCCCC
Q 016668 262 Y--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKDPV 331 (385)
Q Consensus 262 ~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~~~ 331 (385)
+ +...+ +++|+++|+++|++||+|++|. |+...|.. ....+ ..|++++ +|++ .|++.|++++++
T Consensus 190 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~d~~t~--sK~~~~G~~~G~~~~~~--- 263 (395)
T 3nx3_A 190 GEGGINPANKDFYKALRKLCDEKDILLIADEIQC-GMGRSGKFFAYEHAQILPDIMTS--AKALGCGLSVGAFVINQ--- 263 (395)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE--CGGGTTTSCCEEEEECH---
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCcCCcchhHHhcCCCCCEEEe--cccccCCCceEEEEEch---
Confidence 2 23334 8999999999999999999984 44322221 11122 3566654 5987 456889999887
Q ss_pred chhHH-HHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 332 LGVEL-ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 332 ~~~~~-~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
++ .+.+........++ .+....++...+++.+..+++.+
T Consensus 264 ---~~~~~~~~~~~~~~~~~-~~~~~~~aa~aal~~~~~~~~~~ 303 (395)
T 3nx3_A 264 ---KVASNSLEAGDHGSTYG-GNPLVCAGVNAVFEIFKEEKILE 303 (395)
T ss_dssp ---HHHHHHSCTTCCSSCBS-CCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ---hhhhhhcCCcccCCCCC-CCHHHHHHHHHHHHHHHhhHHHH
Confidence 56 66665443333333 34444555555776554444433
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-14 Score=138.90 Aligned_cols=230 Identities=15% Similarity=0.088 Sum_probs=133.4
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
.+|.|.+++...+... . .|.. ..|.. ++....+++++++++....+ ..++++||++|+..++.++ ..+
T Consensus 60 ~~p~v~~a~~~~~~~~-~-~~~~---~~~~~---~~~~~l~~~la~~~~~~~~~--~v~~~~ggsea~~~al~~~~~~~~ 129 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANP-A-GATI---LSASN---APAVTLAERLLASFPGEGTH--KIWFGHSGSDANEAAYRAIVKATG 129 (439)
T ss_dssp SCHHHHHHHHHHHHSC-S-CSCS---SSSEE---HHHHHHHHHHHHTTTCTTTE--EEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhc-c-Cccc---cccCC---HHHHHHHHHHHHhCCCCCCC--EEEEeCCHHHHHHHHHHHHHHHhC
Confidence 5899999998776542 2 2221 11222 34444566888988654311 2466778899999999876 446
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceE------------EEEeccccCCCCCC-----CHHHHHHHhh---hcC
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF------------ESMPYRLDESTGLV-----DYDMLEKTAI---LFR 251 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~------------~~i~~~~~~~~~~i-----D~d~le~~i~---~~~ 251 (385)
+++|++.++.+.|... . .+...+... ....++.+ ..+.. |+++|++.++ ..+
T Consensus 130 ~~~vi~~~~~yhg~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~~~ 201 (439)
T 3dxv_A 130 RSGVIAFAGAYHGCTV-----G--SMAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTEKLAAVPAGS 201 (439)
T ss_dssp CCEEEEETTCCCCSSH-----H--HHCC-------------CEEEECCCCSSS-CBTTBTTSHHHHHHHHHHHHTSCTTC
T ss_pred CCEEEEECCCCCCCcH-----H--HHhhcCCCchhhccccCCCCCCcEEcCCC-cccccccHHHHHHHHHHHHHhcCCCC
Confidence 7788887765422211 0 111222110 01111111 11111 7999999984 335
Q ss_pred CcEEEEcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCc-cc-CCCC-CCcEEEECCCccC-ccccE
Q 016668 252 PKLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASV-VA-DPFK-YCDVVTTTTHKSL-RGPRG 321 (385)
Q Consensus 252 pklIi~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~-~~-~p~~-gaDiv~~S~hK~l-~Gprg 321 (385)
+++|+++++++ +...+ +++|+++|+++|++||+|++|. |+...|. .. ..++ ..|++ |++|++ .|++.
T Consensus 202 ~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~ri 278 (439)
T 3dxv_A 202 IGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPL 278 (439)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCC
T ss_pred EEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhcCCCCCEE--EEcchhcCCcce
Confidence 67888876543 34455 9999999999999999999995 5533332 11 1122 35666 667998 45788
Q ss_pred EEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
|++++++ ++.+.+......... .+....++...+++.+..+++
T Consensus 279 G~~~~~~------~~~~~~~~~~~~~t~--~~~~~~~aa~aal~~~~~~~~ 321 (439)
T 3dxv_A 279 SAVIAPA------EILDCASAFAMQTLH--GNPISAAAGLAVLETIDRDDL 321 (439)
T ss_dssp EEEEEEH------HHHTSCSSSSCCTTT--TCHHHHHHHHHHHHHHHHTTH
T ss_pred EEEEECH------HHHhhhcCCCcCCCc--ccHHHHHHHHHHHHHHHhcCH
Confidence 9999987 566666543222222 334444444556665544444
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=136.14 Aligned_cols=231 Identities=12% Similarity=0.053 Sum_probs=130.6
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----- 189 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all----- 189 (385)
+|.|.+++...+.+ ....++. ++ -. ......+++++++++.+.+ -.++++||++|+..++.+++
T Consensus 47 ~p~v~~a~~~~~~~-~~~~~~~-~~--~~----~~~~~l~~~la~~~~~~~~---~v~~~~gg~ea~~~al~~~~~~~~~ 115 (430)
T 3i4j_A 47 RAEVGERMAAQAAR-LPFVHGS-QF--SS----DVLEEYAGRLARFVGLPTF---RFWAVSGGSEATESAVKLARQYHVE 115 (430)
T ss_dssp CHHHHHHHHHHHHH-CCCCCTT-TC--EE----HHHHHHHHHHHHHTTCTTC---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh-ccccccc-cc--CC----HHHHHHHHHHHHhCCCCCC---EEEEeCcHHHHHHHHHHHHHHHHHh
Confidence 78999998877653 2211111 11 12 2333455678899987654 13556678899999998886
Q ss_pred ---cCCCEEeecCCCCCccccCCccccccccccCcc--------------eEEEEeccccCCCCCCCHHHHHHHhhh---
Q 016668 190 ---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI--------------YFESMPYRLDESTGLVDYDMLEKTAIL--- 249 (385)
Q Consensus 190 ---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~--------------~~~~i~~~~~~~~~~iD~d~le~~i~~--- 249 (385)
.+||+|++.++.+.|+... .....+. .+..++++-....+..|+++|++.++.
T Consensus 116 ~g~~~~~~vi~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 188 (430)
T 3i4j_A 116 RGEPGRFKVITRVPSYHGASLG-------SLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGP 188 (430)
T ss_dssp TTCTTCCEEEEETTC--------------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCG
T ss_pred cCCCCCcEEEEEeCCcCCCCcc-------cccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCC
Confidence 4578999988865443210 0111111 111122110000022467899998864
Q ss_pred cCCcEEEEcCCCC-C--CCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCC-C-CCcEEEECCCccCc-
Q 016668 250 FRPKLIIAGASAY-P--RDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPF-K-YCDVVTTTTHKSLR- 317 (385)
Q Consensus 250 ~~pklIi~~~s~~-~--~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~-~-gaDiv~~S~hK~l~- 317 (385)
.++++|++++.+. + ...+ +++|+++|+++|++||+|++|. |+...|... ..+ + ..|+++ ++|+|.
T Consensus 189 ~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~~~~g~~~~~~~~~~~~~di~t--~sK~l~~ 265 (430)
T 3i4j_A 189 ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMS-GMGRCGSPLALSRWSGVTPDIAV--LGKGLAA 265 (430)
T ss_dssp GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTTCCCSEEE--ECGGGTT
T ss_pred CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhhhhcCCCCcEEE--EcccccC
Confidence 3456777765443 1 2233 8999999999999999999984 543333211 112 2 346665 459984
Q ss_pred c-ccEEEEEEeCCCCchhHHHHHHhhc----cCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 318 G-PRGGMIFFKKDPVLGVELESAINNA----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 318 G-prgG~I~~~~~~~~~~~~~~~i~~~----~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
| +|.|++++++ ++.+.+... ...... +.+....++..++|+.+..+++.
T Consensus 266 G~~r~G~~~~~~------~i~~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~ 319 (430)
T 3i4j_A 266 GYAPLAGLLAAP------QVYETVMGGSGAFMHGFTY-AGHPVSVAAGLSVLDIVEREDLT 319 (430)
T ss_dssp TSSCCEEEEECH------HHHHHHHHTTCBCCCCCTT-TTCHHHHHHHHHHHHHHHHTTHH
T ss_pred CccccEEEEECH------HHHHHHhccCCcccccCCC-CCCHHHHHHHHHHHHHHHcccHH
Confidence 5 7779999977 677777653 111222 33444455555577655444443
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=144.70 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcceE
Q 016668 147 DELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYF 224 (385)
Q Consensus 147 ~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~ 224 (385)
.++.+.+++++++++|++.+ ++.+++| +.++.+++.++ +++||+|+++++.|.++.. .+ ...+...|..+
T Consensus 107 ~~~~~~~~~~la~~~g~~~~----~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~-~~---~~~a~~~G~~v 178 (438)
T 1wyu_A 107 LQATFEYQTMIAELAGLEIA----NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRA-VL---RAYLEAVGAKL 178 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSEE----CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHH-HH---HHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCcc----ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHH-HH---HHHHHHCCCEE
Confidence 35566678899999999863 4444554 43545555553 6899999999886644321 00 00113367655
Q ss_pred EEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEEecc-ccccccccCcccCCC
Q 016668 225 ESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMA-HISGLVAASVVADPF 302 (385)
Q Consensus 225 ~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~~~~dl~~I~~ia~~~ga~livD~a-h~~Gli~~g~~~~p~ 302 (385)
..++ . +++.+|+++ +++ ++++|++..++ +|...|+++|.++|+++|+++++|.. +..|.. ..+-
T Consensus 179 ~~v~--~--~~~~~d~~~----i~~-~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~-----~~~~ 244 (438)
T 1wyu_A 179 LTLP--L--EGGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVL-----KPPG 244 (438)
T ss_dssp EEEC--C--BTTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTB-----CCHH
T ss_pred EEEc--C--cCCccCHHH----hCC-CeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhccCc-----CCCc
Confidence 5544 3 246777766 443 68888887663 35677999999999999999997754 544432 2222
Q ss_pred C-CCcEEEECCCc-----cCccccEEEEEEeCC
Q 016668 303 K-YCDVVTTTTHK-----SLRGPRGGMIFFKKD 329 (385)
Q Consensus 303 ~-gaDiv~~S~hK-----~l~GprgG~I~~~~~ 329 (385)
+ ++|++++|.|| ++.||++|+++++++
T Consensus 245 ~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~ 277 (438)
T 1wyu_A 245 AYGADIAVGDGQSLGLPMGFGGPHFGFLATKKA 277 (438)
T ss_dssp HHTCSEEEEECTTTTCCCGGGCSCCEEEEECGG
T ss_pred cCCCCEEEECCcccCCCccCCCCCeeEEEEcHH
Confidence 2 78999999777 678998899999874
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.8e-13 Score=133.04 Aligned_cols=238 Identities=13% Similarity=0.001 Sum_probs=135.3
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc----
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL---- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all---- 189 (385)
.+|.|.+++...+.. ... .+. ....+ .....+++++++++.+.+ .++++||++|+..++..+.
T Consensus 66 ~~p~v~~A~~~~~~~-~~~-~~~---~~~~~----~~~~la~~l~~~~~~~~~----v~~~~ggseA~~~al~~~~~~~~ 132 (452)
T 3n5m_A 66 GRKELAEAAYKQLQT-LSY-FPM---SQSHE----PAIKLAEKLNEWLGGEYV----IFFSNSGSEANETAFKIARQYYA 132 (452)
T ss_dssp CCHHHHHHHHHHHTT-CCC-CCT---TSEEH----HHHHHHHHHHHHHTSCEE----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cCC-ccc---ccCCH----HHHHHHHHHHHhCCCCce----EEEeCchHHHHHHHHHHHHHHHH
Confidence 379999999877643 211 111 11223 333455678888887652 3566788999999998887
Q ss_pred -c---CCCEEeecCCCCCccccCCc-ccccccc----ccCcceEEEEeccccCCCCCCC---------HHHHHHHhh---
Q 016668 190 -K---PHDRIMGLDLPHGGHLSHGF-MTPKRRV----SGTSIYFESMPYRLDESTGLVD---------YDMLEKTAI--- 248 (385)
Q Consensus 190 -~---pGD~Vl~~~~~~ggh~s~~~-~~~~~~~----~~~g~~~~~i~~~~~~~~~~iD---------~d~le~~i~--- 248 (385)
+ ++|+|++.++.+.|+..... .+..... .-....+..++.+.......-| +++|++.++
T Consensus 133 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 212 (452)
T 3n5m_A 133 QKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL 212 (452)
T ss_dssp TTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred hcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence 5 88999999886644310000 0000000 0000112223321110000112 899999886
Q ss_pred hcCCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccC-cc
Q 016668 249 LFRPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSL-RG 318 (385)
Q Consensus 249 ~~~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l-~G 318 (385)
..++++|+++++ +.|...+ +++|+++|+++|++||+|++|. |+...|.. . ...+ ..|+++ ++|++ .|
T Consensus 213 ~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G 289 (452)
T 3n5m_A 213 SETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVIC-GFGRTGKAFGFMNYDVKPDIIT--MAKGITSA 289 (452)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEE--ECGGGGTT
T ss_pred CCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcccccchhhhcCCCCCEEe--ecccccCC
Confidence 235678888765 3343444 9999999999999999999984 54333321 1 1112 356665 45987 46
Q ss_pred -ccEEEEEEeCCCCchhHHHHHHhh----cc-CCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 319 -PRGGMIFFKKDPVLGVELESAINN----AV-FPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 319 -prgG~I~~~~~~~~~~~~~~~i~~----~~-fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
++.|++++++ ++.+.+.. .. ..+...+.+....++..++|+.+..+++.
T Consensus 290 ~~~ig~~~~~~------~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 344 (452)
T 3n5m_A 290 YLPLSATAVKR------EIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLI 344 (452)
T ss_dssp SSCCEEEEEEH------HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred CcceEEEEECH------HHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence 6779999987 67777643 11 11222233444455545577755444443
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=134.12 Aligned_cols=215 Identities=12% Similarity=0.091 Sum_probs=140.1
Q ss_pred hccccccCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeec-CCcHH
Q 016668 103 KSLELIASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSP 179 (385)
Q Consensus 103 ~~l~Liasen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~-~sGs~ 179 (385)
.-+++-.+++. +++.|++++...+.. ..+|+... + .++ ++++++++|++.+ +|.+ ++|++
T Consensus 16 ~~id~~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~~---~----~~l----r~~la~~~~~~~~----~i~~t~g~~~ 78 (350)
T 3fkd_A 16 EIVNFSTTVWTDGDKDHLEKHLVENLNC--IRHYPEPD---A----GTL----RQMLAKRNSVDNN----AILVTNGPTA 78 (350)
T ss_dssp CCEECSCCSCCCSCCHHHHHHHHHTGGG--GGSCCCTT---C----HHH----HHHHHHHTTCCGG----GEEEESHHHH
T ss_pred cEEEccCCCCCCCCCHHHHHHHHHhHhH--HhcCCCCc---H----HHH----HHHHHHHhCcCHH----HEEEcCCHHH
Confidence 34566545444 489999999877632 22455421 2 134 4578889998764 3444 44566
Q ss_pred HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc-cCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 016668 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL-DESTGLVDYDMLEKTAILFRPKLIIAG 258 (385)
Q Consensus 180 A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~-~~~~~~iD~d~le~~i~~~~pklIi~~ 258 (385)
|+..++.++. ||+|++.+|.|.++. ..+...|..+..++ + ++ .+.+++ .++|+|++.
T Consensus 79 al~~~~~~l~--gd~Vi~~~p~~~~~~--------~~~~~~g~~~~~v~--~~~~-~~~~~~---------~~~~~v~i~ 136 (350)
T 3fkd_A 79 AFYQIAQAFR--GSRSLIAIPSFAEYE--------DACRMYEHEVCFYP--SNED-IGEADF---------SNMDFCWLC 136 (350)
T ss_dssp HHHHHHHHTT--TCEEEEEESCCHHHH--------HHHHHTTCEEEEEE--TTSC-GGGSCC---------TTCSEEEEE
T ss_pred HHHHHHHHHC--CCEEEEeCCCcHHHH--------HHHHHcCCeEEEEe--cCCc-cccCcc---------CCCCEEEEe
Confidence 9998888887 999999988765432 13445676555444 4 32 123333 368998887
Q ss_pred CCCCC--CCCCHHHHHHHHHHcC-cEEEEeccccccccccCccc-CCCC--CCcEEEECCCccC--ccccEEEEEEeCCC
Q 016668 259 ASAYP--RDFDYPRMRQIADAVG-ALLMMDMAHISGLVAASVVA-DPFK--YCDVVTTTTHKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 259 ~s~~~--~~~dl~~I~~ia~~~g-a~livD~ah~~Gli~~g~~~-~p~~--gaDiv~~S~hK~l--~GprgG~I~~~~~~ 330 (385)
.++|| ...+.+++.++++.++ .+|++|++|. ++...+... ..++ +.++++.|+||++ +|.|.|++++++
T Consensus 137 ~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~-- 213 (350)
T 3fkd_A 137 NPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYV-SFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANK-- 213 (350)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTT-TSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCH--
T ss_pred CCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchh-hhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCH--
Confidence 77765 6789999999999886 7999999984 444333211 1222 3448899999986 577889999965
Q ss_pred CchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 331 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 331 ~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
++.+++.....+ .+++....++...+++.
T Consensus 214 ----~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 242 (350)
T 3fkd_A 214 ----DFMKRVAAFSTP---WAVNALAIEAAKFILIH 242 (350)
T ss_dssp ----HHHHHHHTTCCT---TCSCHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHhCCC---CCCCHHHHHHHHHHHhC
Confidence 688877765433 24555556666666654
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.1e-13 Score=132.59 Aligned_cols=224 Identities=16% Similarity=0.087 Sum_probs=133.3
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
.+|.|.+++...+..-. .|. + -. ......+++++++++ +.+ ..++++||++|+..++... ...
T Consensus 69 ~~p~v~~a~~~~~~~~~--~~~----~-~~----~~~~~la~~l~~~~~-~~~---~v~~~~ggsea~~~al~~a~~~~~ 133 (427)
T 3fq8_A 69 AHPEVIEALKVAMEKGT--SFG----A-PC----ALENVLAEMVNDAVP-SIE---MVRFVNSGTEACMAVLRIMRAYTG 133 (427)
T ss_dssp TCHHHHHHHHHHHTTCS--CCS----S-CC----HHHHHHHHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCC--CcC----C-CC----HHHHHHHHHHHHhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 48999999987764321 111 1 12 333345567888887 332 2456678899999988543 234
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEE-----------------EEeccccCCCCCCCHHHHHHHhhhc--CC
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFE-----------------SMPYRLDESTGLVDYDMLEKTAILF--RP 252 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~-----------------~i~~~~~~~~~~iD~d~le~~i~~~--~p 252 (385)
+|+|++.++.+.|.... .....+.... +..++. -|+++|++.+++. ++
T Consensus 134 ~~~vi~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~ 200 (427)
T 3fq8_A 134 RDKIIKFEGCYHGHADM-------FLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY------NDLEAVKALFAENPGEI 200 (427)
T ss_dssp CCEEEEEETCCCCSCGG-------GCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET------TCHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCcCCCCHH-------HHHhcCCcccccCCCCCCCCCCcccCceeecCC------CCHHHHHHHHHhCCCCE
Confidence 57888887765332111 0011111000 111111 1899999998763 56
Q ss_pred cEEEEcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccEE
Q 016668 253 KLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRGG 322 (385)
Q Consensus 253 klIi~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~GprgG 322 (385)
++|++++.++ +...+ +++|+++|+++|++||+|++|. |+ ..|... ..+. ..|++++ +|+| +|.+.|
T Consensus 201 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~t~--sK~~~~G~~~G 276 (427)
T 3fq8_A 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFGVTPDLTTL--GKIIGGGLPVG 276 (427)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTTCCCSEEEE--CGGGGTTSSCE
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcCCCCChhhh--hhhhhCCcceE
Confidence 7888876432 34555 9999999999999999999985 66 333211 1122 3576655 4998 467889
Q ss_pred EEEEeCCCCchhHHHHHHhhc--cCCCccCCChHHHHHHHHHHHHHhhCchHHHH
Q 016668 323 MIFFKKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 375 (385)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~~~--~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y 375 (385)
++++++ ++.+.+... .+.+..-+.+....++...+++.+..+++.++
T Consensus 277 ~~~~~~------~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~ 325 (427)
T 3fq8_A 277 AYGGKR------EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEY 325 (427)
T ss_dssp EEEECH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHH
T ss_pred EEEEcH------HHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHH
Confidence 998877 576666532 11111113355666666677877655555433
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-13 Score=133.84 Aligned_cols=236 Identities=12% Similarity=-0.005 Sum_probs=134.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--cC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--~p 191 (385)
.+|.|.+++...+... .. ....| ..+ .....+++++++++.+.+ ..++++||++|+..++..+. ..
T Consensus 60 ~~p~v~~a~~~~~~~~-~~--~~~~~--~~~----~~~~l~~~la~~~~~~~~---~v~~~~gg~ea~~~a~~~~~~~~~ 127 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKL-DH--LFSEM--LSR----PVVDLATRLANITPPGLD---RALLLSTGAESNEAAIRMAKLVTG 127 (433)
T ss_dssp TCHHHHHHHHHHHHHC-CC--CCTTC--CCH----HHHHHHHHHHHHSCTTCC---EEEEESCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC-cc--ccccc--CCH----HHHHHHHHHHHhCCCCcC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 4799999998776532 11 11111 122 222344568889987653 23556678899999988653 34
Q ss_pred CCEEeecCCCCCccccC-------CccccccccccCcceEEEEeccccCC---------CCCCCHHHHHHHhhh---cCC
Q 016668 192 HDRIMGLDLPHGGHLSH-------GFMTPKRRVSGTSIYFESMPYRLDES---------TGLVDYDMLEKTAIL---FRP 252 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~-------~~~~~~~~~~~~g~~~~~i~~~~~~~---------~~~iD~d~le~~i~~---~~p 252 (385)
+|+|++.++.+.|.... .+.... .....| +..++++.... .+.+|+++|++.+++ .++
T Consensus 128 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 204 (433)
T 1zod_A 128 KYEIVGFAQSWHGMTGAAASATYSAGRKGV-GPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNL 204 (433)
T ss_dssp CCEEEEETTCCCCSSHHHHHTCCSSCCSSS-CCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCE
T ss_pred CCeEEEECCCcCCCChhHHhhcCCcccccc-CCCCCC--ceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCe
Confidence 68999988765332110 000000 000112 33444321100 012479999998864 356
Q ss_pred cEEEEcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccEE
Q 016668 253 KLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGG 322 (385)
Q Consensus 253 klIi~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-GprgG 322 (385)
++|++++.++ |...+ +++|+++|+++|++||+|++|. |+...|... ..+. ..|++ |++|+|. |.+.|
T Consensus 205 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig 281 (433)
T 1zod_A 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLA 281 (433)
T ss_dssp EEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCE
T ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcCchHhHHhhcCCCCCEE--EecccccCCCCee
Confidence 7888765432 43334 9999999999999999999985 443223211 0011 34665 5669984 56779
Q ss_pred EEEEeCCCCchhHHHHHHhhccCC--CccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 323 MIFFKKDPVLGVELESAINNAVFP--GLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 323 ~I~~~~~~~~~~~~~~~i~~~~fp--~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
++++++ ++.+.+....+. ...+ .+....++...+++.+.++++.+
T Consensus 282 ~~~~~~------~~~~~~~~~~~~~~~t~~-~~~~~~~a~~aal~~~~~~~~~~ 328 (433)
T 1zod_A 282 AIVTSA------AIEERAHELGYLFYTTHV-SDPLPAAVGLRVLDVVQRDGLVA 328 (433)
T ss_dssp EEEECH------HHHHHHHHTTCCCCCTTT-TCHHHHHHHHHHHHHHHHTTHHH
T ss_pred EEEEhH------HHHHhhccCCCCCCCCCC-cCHHHHHHHHHHHHHHHhCCHHH
Confidence 999987 677777653222 2232 34445555556776655445533
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-13 Score=135.15 Aligned_cols=226 Identities=18% Similarity=0.134 Sum_probs=131.6
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCCCCCcceeecCCcHHHHHHHHHHh--cc
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg-~~~~~~~~~V~~~sGs~A~~~a~~al--l~ 190 (385)
.+|.|.+++...+.+....++ ..+ +....+++++++++ .+. .++++||++|+..++.+. +.
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~-------~~~----~~~~l~~~la~~~~~~~~-----v~~~~sgseA~~~al~~ar~~~ 136 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGA-------PGE----AEVLLAEKILGYVKRGGM-----IRFVNSGTEATMTAIRLARGYT 136 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSS-------CCH----HHHHHHHHHHHHHCTTCE-----EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------CCH----HHHHHHHHHHHhCCCCCE-----EEEeCCHHHHHHHHHHHHHHhh
Confidence 589999999888754211111 122 33335567888884 322 356778899999998872 44
Q ss_pred CCCEEeecCCCCCccccCCccccc-cc------cccCcce----EEEEeccccCCCCCCCHHHHHHHhhh--cCCcEEEE
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPK-RR------VSGTSIY----FESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIA 257 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~-~~------~~~~g~~----~~~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~ 257 (385)
++|+|++.++.+.|+.... .... .. ....|.. ...++++ ..|+++|++.+++ .++++|++
T Consensus 137 ~~~~vi~~~~~yhg~~~~~-~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ 209 (434)
T 2epj_A 137 GRDLILKFDGCYHGSHDAV-LVAAGSAAAHYGVPTSAGVPEAVARLTLVTP------YNDVEALERVFAEYGDRIAGVIV 209 (434)
T ss_dssp CCCEEEEEETCCCCSSGGG-SEECC------CEESSTTCCHHHHTTEEEEE------TTCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCeEEEEcCCcCCCCHHH-HHhcCCCccccCCCCCCCCCCcccCceEecC------CCCHHHHHHHHHhCCCCEEEEEE
Confidence 5678888877654321100 0000 00 0001210 0111211 1389999998864 25678888
Q ss_pred cCCC--CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccEEEEEEe
Q 016668 258 GASA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFK 327 (385)
Q Consensus 258 ~~s~--~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-GprgG~I~~~ 327 (385)
++.+ .|...+ +++|+++|+++|++||+|++|+ |+. .|... ..+. ..|++ |++|+|. |.++|+++++
T Consensus 210 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~-~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~ 285 (434)
T 2epj_A 210 EPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFR-LGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGS 285 (434)
T ss_dssp CSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTT-SSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEEC
T ss_pred eCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-cee-CCcchhhHHhCCCCCee--eecchhcCCcceeeeeec
Confidence 6543 355667 9999999999999999999996 662 22110 1112 45775 5569985 4588999998
Q ss_pred CCCCchhHHHHHHhh-c-cCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 328 KDPVLGVELESAINN-A-VFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 328 ~~~~~~~~~~~~i~~-~-~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+ ++.+.+.. . .+.+..-+.+...+++...+|+.+.++++
T Consensus 286 ~------~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~ 326 (434)
T 2epj_A 286 R------EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPV 326 (434)
T ss_dssp H------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCH
T ss_pred H------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCH
Confidence 7 56666544 1 11111113445556666667776544444
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-14 Score=139.22 Aligned_cols=227 Identities=10% Similarity=-0.028 Sum_probs=136.0
Q ss_pred hccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceee-cCCcHHHH
Q 016668 103 KSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQ-PLSGSPAN 181 (385)
Q Consensus 103 ~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~-~~sGs~A~ 181 (385)
..+++.+++..+|+.|++++.... +. ..++. .+ +... .++.+.+++++++++|++..+ ..++ +.+|++|+
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~-~~-~~~~~-~~---~~~~-~~~~~~~~~~la~~~g~~~~~--~i~~~t~g~t~al 110 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTA-AA-LFGTS-HR---QAPV-KNLVGRVRSGLAELFSLPDGY--EVILGNGGATAFW 110 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTT-TT-TTTSC-TT---SHHH-HHHHHHHHHHHHHHTTCCTTC--EEEEEETCHHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcC-CC-ccCcC-cC---CHHH-HHHHHHHHHHHHHHhCCCCCc--eEEEeCCchhHHH
Confidence 456777888889999999987521 00 00100 11 2222 344455788999999997421 1233 56778899
Q ss_pred HHHHHHhccCC-CEEeecCCCCCccccCCccccccccccC--cceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 016668 182 FEVYTAILKPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGT--SIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG 258 (385)
Q Consensus 182 ~~a~~all~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~--g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~ 258 (385)
..++.++++|| |.| ....|+. ... ...... |..+..++ ++ +...+|. .+. .++|+|++.
T Consensus 111 ~~~~~~l~~~gv~~v--~~~~~~~----~~~---~~~~~~~~g~~~~~v~--~~-~g~~~~~-----~i~-~~~~~v~~~ 172 (398)
T 2fyf_A 111 DAAAFGLIDKRSLHL--TYGEFSA----KFA---SAVSKNPFVGEPIIIT--SD-PGSAPEP-----QTD-PSVDVIAWA 172 (398)
T ss_dssp HHHHHHTCSSCEEEE--ECSHHHH----HHH---HHHHHCTTSCCCEEEE--CC-TTCCCCC-----CCC-TTCSEEEEE
T ss_pred HHHHHHhcCCCeEEE--eCCHHHH----HHH---HHHHHhCCCCceEEEe--cC-CCCCCCc-----ccc-CCCCEEEEe
Confidence 99999999998 544 2222211 000 011222 44445555 33 2223332 133 378998876
Q ss_pred CCCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccc-cEEEEEEeCCCCchhH
Q 016668 259 ASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP-RGGMIFFKKDPVLGVE 335 (385)
Q Consensus 259 ~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gp-rgG~I~~~~~~~~~~~ 335 (385)
.+++ |...|+++|.++ +|+++++|++|..|.. +.+++.+|++++|+||++.++ +.|++++++ +
T Consensus 173 ~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~-----~~~~~~~di~~~s~sK~~~~~gg~g~l~~~~------~ 238 (398)
T 2fyf_A 173 HNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGL-----PVDIAETDAYYFAPQKNFASDGGLWLAIMSP------A 238 (398)
T ss_dssp SEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTS-----CCCGGGCSEEEECTTSTTCSCSSEEEEEECH------H
T ss_pred CcCCCcceecchHHhhhh---cCCeEEEEeccccCCc-----ccCcccCcEEEEecCcccCCCCceEEEEECH------H
Confidence 5544 566788888777 8999999999965532 222335799999999998665 458888877 4
Q ss_pred HHHHHhhc---------cC-----------CCccCCChHHHHHHHHHHHHHhhCc
Q 016668 336 LESAINNA---------VF-----------PGLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 336 ~~~~i~~~---------~f-----------p~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
+.+++... .+ ....++++...++++..+++.+.+.
T Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~ 293 (398)
T 2fyf_A 239 ALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGN 293 (398)
T ss_dssp HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 55554221 00 1223567777777888888765443
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-12 Score=130.68 Aligned_cols=240 Identities=13% Similarity=0.016 Sum_probs=135.0
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
.+|.|.+++...+.+. ...+.. ..+.. +.....+++++++++.+.+ -.++++||++|+..++.++.+
T Consensus 68 ~~p~v~~A~~~~~~~~-~~~~~~---~~~~~---~~~~~la~~l~~~~~~~~~---~v~~~~gGseA~~~al~~~~~~~~ 137 (460)
T 3gju_A 68 GRQKIADAIATQAKNL-AYYHAY---VGHGT---EASITLAKMIIDRAPKGMS---RVYFGLSGSDANETNIKLIWYYNN 137 (460)
T ss_dssp CCHHHHHHHHHHHHHH-SCCCCC---TTCCC---HHHHHHHHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cccccc---cccCC---HHHHHHHHHHHhhCCCCcC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 3789999988776542 111221 11211 2333455678888876553 235567789999999988864
Q ss_pred -----CCCEEeecCCCCCccccCC----ccccc-cccccCcceEEEEeccc--cCCCCCCC--------HHHHHHHhhh-
Q 016668 191 -----PHDRIMGLDLPHGGHLSHG----FMTPK-RRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL- 249 (385)
Q Consensus 191 -----pGD~Vl~~~~~~ggh~s~~----~~~~~-~~~~~~g~~~~~i~~~~--~~~~~~iD--------~d~le~~i~~- 249 (385)
++|+|++.++.+.|+.... ..... .........+..++++. ..++...| +++|++.++.
T Consensus 138 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~ 217 (460)
T 3gju_A 138 VLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE 217 (460)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc
Confidence 5689999887653321100 00000 00001111233444222 10111123 6889888863
Q ss_pred --cCCcEEEEcCCCCC--CCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCcc
Q 016668 250 --FRPKLIIAGASAYP--RDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG 318 (385)
Q Consensus 250 --~~pklIi~~~s~~~--~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~G 318 (385)
.++++|++++.+++ ...+ +++|+++|+++|++||+|++|. |+...|... ..++ ..|++++ +|+|.|
T Consensus 218 ~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~--sK~l~g 294 (460)
T 3gju_A 218 GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT-GFGRLGTMFGSDHYGIKPDLITI--AKGLTS 294 (460)
T ss_dssp CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEE--CGGGTT
T ss_pred CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeee--ehhhcC
Confidence 35678888764432 2233 8999999999999999999984 543323211 0111 3467654 599966
Q ss_pred --ccEEEEEEeCCCCchhHHHHHHhhc------cCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 319 --PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 319 --prgG~I~~~~~~~~~~~~~~~i~~~------~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.|++++++ ++.+.+... ...+..-+.+....++..++|+.+..+++
T Consensus 295 G~~~lg~v~~~~------~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 350 (460)
T 3gju_A 295 AYAPLSGVIVAD------RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDL 350 (460)
T ss_dssp TSSCCEEEEEEH------HHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTH
T ss_pred CCCCeEEEEECH------HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 7889999988 677777521 11122223344455555567776544444
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-12 Score=127.95 Aligned_cols=231 Identities=16% Similarity=0.165 Sum_probs=130.5
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--cC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--~p 191 (385)
.+|.|.+++...+.+....+|+ ++ .....+++++++++ ..+ ..++++||++|+..++.... .+
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~~-------~~----~~~~la~~l~~~~~-~~~---~v~~~~sGsea~~~al~~a~~~~~ 134 (429)
T 4e77_A 70 NHPAIRQAVIEAVERGLSFGAP-------TE----MEVKMAQLVTDLVP-TMD---MVRMVNSGTEATMSAIRLARGYTG 134 (429)
T ss_dssp TCHHHHHHHHHHHTTCSCCSSC-------CH----HHHHHHHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCcccCCC-------CH----HHHHHHHHHHhhCC-CCC---EEEEeCcHHHHHHHHHHHHHHhhC
Confidence 4899999998877543221222 22 22234557888886 332 24567789999999987543 46
Q ss_pred CCEEeecCCCCCccccCCccc-cccc-----cccCcce----EEEEeccccCCCCCCCHHHHHHHhhhc--CCcEEEEcC
Q 016668 192 HDRIMGLDLPHGGHLSHGFMT-PKRR-----VSGTSIY----FESMPYRLDESTGLVDYDMLEKTAILF--RPKLIIAGA 259 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~-~~~~-----~~~~g~~----~~~i~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~ 259 (385)
+++|++.++.+.|........ .... ....+.. .....++ ..|+++|++.+++. ++++|++++
T Consensus 135 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep 208 (429)
T 4e77_A 135 RDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCT------YNDLASVRQAFEQYPQEVACIIVEP 208 (429)
T ss_dssp CCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEEC------TTCHHHHHHHHHHSTTTEEEEEECS
T ss_pred CCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecC------CCCHHHHHHHHHhcCCCEEEEEECC
Confidence 778888776543321100000 0000 0000000 0001110 23899999998753 456777764
Q ss_pred CC--CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccEEEEEEeCC
Q 016668 260 SA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRGGMIFFKKD 329 (385)
Q Consensus 260 s~--~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~GprgG~I~~~~~ 329 (385)
.+ .+...+ +++|+++|+++|++||+|++|. |+ ..|... ..+. ..|++ |++|++ .|++.|++++++
T Consensus 209 ~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~-r~g~~~~~~~~~~~pdi~--t~sK~~~~G~~~G~~~~~~- 283 (429)
T 4e77_A 209 VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF-RVALAGAQDYYHVIPDLT--CLGKIIGGGMPVGAFGGRR- 283 (429)
T ss_dssp SBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT-TTBTTCHHHHTTCCCSEE--EEEGGGGTTSCCEEEEECH-
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-ccCcchHHHhcCCCCCee--eecccccCCCCeEEEEECH-
Confidence 42 233444 9999999999999999999985 65 322211 1122 34775 556998 466889998877
Q ss_pred CCchhHHHHHHhhc--cCCCccCCChHHHHHHHHHHHHHhhCchHHHH
Q 016668 330 PVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 375 (385)
Q Consensus 330 ~~~~~~~~~~i~~~--~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y 375 (385)
++.+.+... .+.+..-+.+...+++...+|+.+..+++.++
T Consensus 284 -----~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 326 (429)
T 4e77_A 284 -----EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYET 326 (429)
T ss_dssp -----HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHH
T ss_pred -----HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 566665432 11222223555666666678877655555433
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.1e-13 Score=134.37 Aligned_cols=239 Identities=12% Similarity=0.021 Sum_probs=136.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
.+|.|.+++...+.. ......+ ++ -.+ .....+++++++++.+.+ ..++++||++|+..++..+.+
T Consensus 92 ~~p~v~~A~~~~~~~-~~~~~~~-~~--~~~----~~~~L~e~la~~~~~~~~---~v~~~~sGseA~~~Alk~a~~~~~ 160 (457)
T 3tfu_A 92 GHPALDQALTTQLRV-MNHVMFG-GL--THE----PAARLAKLLVDITPAGLD---TVFFSDSGSVSVEVAAKMALQYWR 160 (457)
T ss_dssp TCHHHHHHHHHHHHH-CSCCCSS-SE--ECH----HHHHHHHHHHHHSSTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccCcccc-cc--CCH----HHHHHHHHHHHhCCCCcC---EEEEeCcHHHHHHHHHHHHHHHHH
Confidence 489999999887754 2211111 11 122 223345678999976543 245667889999999988765
Q ss_pred ----CCC-EEeecCCCCCccccCC-cccc----c-cccccCcceEEEEeccccCCCCCCCHHHHHHHhhh--cCCcEEEE
Q 016668 191 ----PHD-RIMGLDLPHGGHLSHG-FMTP----K-RRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIA 257 (385)
Q Consensus 191 ----pGD-~Vl~~~~~~ggh~s~~-~~~~----~-~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~ 257 (385)
+|+ +|++.++.+.|..... ..+. . .........+..++++.+ .....|+++|++.+++ .++++|++
T Consensus 161 ~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~d~~~le~~l~~~~~~~aavi~ 239 (457)
T 3tfu_A 161 GRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR-DYDPAYSAAFEAQLAQHAGELAAVVV 239 (457)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS-SCCHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred hcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc-ccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 665 8888776543321000 0000 0 000000011233333222 1123588999998863 35678888
Q ss_pred cC-CCC--CCCC----CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC---C-CCcEEEECCCccCcc--ccEEEE
Q 016668 258 GA-SAY--PRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---K-YCDVVTTTTHKSLRG--PRGGMI 324 (385)
Q Consensus 258 ~~-s~~--~~~~----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~-gaDiv~~S~hK~l~G--prgG~I 324 (385)
++ .++ +... .+++|+++|+++|++||+|++| .|+...|.. ..+ . ..|++ |++|.|.| ++.|++
T Consensus 240 ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~gr~G~~-~a~~~~~~~pdii--t~sK~l~gG~~~lG~v 315 (457)
T 3tfu_A 240 EPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIA-TGFGRTGAL-FAADHAGVSPDIM--CVGKALTGGYLSLAAT 315 (457)
T ss_dssp CSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSS-STHHHHTCCCSEE--EECGGGGTTSSCCEEE
T ss_pred eCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCc-cCCccccch-hHhHhcCCCceEE--EEChhhhCCCcceEEE
Confidence 76 333 3332 2899999999999999999997 454333321 111 1 45777 55699976 688999
Q ss_pred EEeCCCCchhHHHHHHhhc---c-CCCccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 325 FFKKDPVLGVELESAINNA---V-FPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~~---~-fp~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
++++ ++.+.+... . ..+..-+.+....++..++|+.+.++++.+
T Consensus 316 ~~~~------~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~ 363 (457)
T 3tfu_A 316 LCTA------DVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRT 363 (457)
T ss_dssp EEEH------HHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred EEcH------HHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 9988 677777421 1 111111334445555555777666665543
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.2e-13 Score=132.12 Aligned_cols=230 Identities=16% Similarity=0.093 Sum_probs=128.2
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceeecCCcHHHHHHHHHHhcc-CC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVYTAILK-PH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~-~~~~~~~V~~~sGs~A~~~a~~all~-pG 192 (385)
+|.|.+++...+... .. +...+| ..+.. ...++++++++|.+ .+ -.+++++|++|+..++.++.. +|
T Consensus 61 ~p~v~~a~~~~~~~~-~~-~~~~~~--~~~~~----~~l~~~la~~~~~~~~~---~v~~~~gg~ea~~~ai~~~~~~~~ 129 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKL-AH-AAANDF--YNIPQ----LELAKKLVTYSPGNFQK---KVFFSNSGTEAIEASIKVVKNTGR 129 (419)
T ss_dssp CHHHHHHHHHHHTTS-CC-CSCSCS--CCHHH----HHHHHHHHHHSSCSSCE---EEEEESSHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHhhC-cc-cccccc--CCHHH----HHHHHHHHHhCCCCcCC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 799999998877432 11 111112 12222 22345788999986 42 134456678899999987654 49
Q ss_pred CEEeecCCCCCccccCCc-cc----ccc-ccccCcceEEEEeccccCCC--CC-----------CCHHHHH-HHhhh---
Q 016668 193 DRIMGLDLPHGGHLSHGF-MT----PKR-RVSGTSIYFESMPYRLDEST--GL-----------VDYDMLE-KTAIL--- 249 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~-~~----~~~-~~~~~g~~~~~i~~~~~~~~--~~-----------iD~d~le-~~i~~--- 249 (385)
|+|++.+|.+.|...... .. ... ........+..++++-+... +. +|+++|+ +.+++
T Consensus 130 ~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~ 209 (419)
T 2eo5_A 130 KYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVP 209 (419)
T ss_dssp CEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccC
Confidence 999999986533211000 00 000 00001112344443211000 11 4788999 88864
Q ss_pred -cCCcEEEEcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc-c-CCCC-CCcEEEECCCccCc-c
Q 016668 250 -FRPKLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV-A-DPFK-YCDVVTTTTHKSLR-G 318 (385)
Q Consensus 250 -~~pklIi~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~-~p~~-gaDiv~~S~hK~l~-G 318 (385)
.++++|++++.++ |...+ +++|+++|+++|++||+|++|. |+...|.. . ..+. ..|++ |++|+|. |
T Consensus 210 ~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G 286 (419)
T 2eo5_A 210 PEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM-GLGRTGKLFAIENFNTVPDVI--TLAKALGGG 286 (419)
T ss_dssp GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCcchhhHHhcCCCCCEE--EecccccCC
Confidence 3556788765433 43444 9999999999999999999984 44333321 1 1112 45666 5669985 4
Q ss_pred -ccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHh
Q 016668 319 -PRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 319 -prgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~ 367 (385)
.+.|+++++++ +. .+ .....+.. +.+...++|...+|+.+
T Consensus 287 ~~riG~~~~~~~------~~-~~-~~~~~~t~-~~n~~~~~aa~aal~~~ 327 (419)
T 2eo5_A 287 IMPIGATIFRKD------LD-FK-PGMHSNTF-GGNALACAIGSKVIDIV 327 (419)
T ss_dssp TSCCEEEEEEGG------GC-CC-------CC-CCCHHHHHHHHHHHHHH
T ss_pred ccceEEEEEchH------hh-cC-CcccCCCC-CCCHHHHHHHHHHHHHH
Confidence 67799999874 33 33 21112222 23445556666677654
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-13 Score=132.08 Aligned_cols=220 Identities=15% Similarity=0.092 Sum_probs=127.6
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc--C
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--P 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--p 191 (385)
.+|.|.+++...+.+....+|+ .+...+ .+++++++++ ..+ ..++++||++|+..++..+.. +
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~~-------~~~~~~----l~~~la~~~~-~~~---~v~~~~~Gsea~~~ai~~a~~~~~ 134 (429)
T 3k28_A 70 ANDRVVEALKAVAERGTSFGAP-------TEIENK----LAKLVIERVP-SIE---IVRMVNSGTEATMSALRLARGYTG 134 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSC-------CHHHHH----HHHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhCcCcCCC-------CHHHHH----HHHHHHHhCC-CCC---EEEEeCChHHHHHHHHHHHHHhhC
Confidence 4899999998777543221222 222223 3456788885 232 245667899999999987754 7
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCC-------------CCHHHHHHHhhh--cCCcEEE
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL-------------VDYDMLEKTAIL--FRPKLII 256 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~-------------iD~d~le~~i~~--~~pklIi 256 (385)
+|+|++.++.+.|+... .+...|.......++. ..+. -|++++++.++. .++++|+
T Consensus 135 ~~~vi~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 205 (429)
T 3k28_A 135 RNKILKFIGCYHGHGDS-------LLIKAGSGVATLGLPD--SPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVI 205 (429)
T ss_dssp CCEEEEEETCCCCSCGG-------GCSSCCTTC-----CC--CTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEE
T ss_pred CCEEEEECCCcCCCcHH-------HHHhcCCcccccCCCC--cCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEE
Confidence 78999887755332110 1111221111111100 0111 289999998864 2456777
Q ss_pred EcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccEEEEEE
Q 016668 257 AGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRGGMIFF 326 (385)
Q Consensus 257 ~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~GprgG~I~~ 326 (385)
+++.+. +...+ +++|+++|+++|++||+|++| .|+ ..|... ..++ ..|+++ ++|+| .|++.|++++
T Consensus 206 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~-~g~-~~g~~~~~~~~~~~~di~t--~sK~~~~G~~iG~~~~ 281 (429)
T 3k28_A 206 VEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVM-TGF-RVAYNCGQGYYGVTPDLTC--LGKVIGGGLPVGAYGG 281 (429)
T ss_dssp ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTT-TSSTTHHHHHHTCCCSEEE--ECGGGGTTSCCEEEEE
T ss_pred EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-ccc-ccCcchHHHHhCCCCceeh--hhhhhcCCCCeEEEEE
Confidence 765432 33445 999999999999999999998 565 333211 1112 346665 56998 4578899998
Q ss_pred eCCCCchhHHHHHHhhc--cCCCccCCChHHHHHHHHHHHHHh
Q 016668 327 KKDPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHA 367 (385)
Q Consensus 327 ~~~~~~~~~~~~~i~~~--~fp~~qg~p~~~~iaala~Al~e~ 367 (385)
++ ++.+.+... .+.+...+.+....++..++++.+
T Consensus 282 ~~------~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~ 318 (429)
T 3k28_A 282 KA------EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQL 318 (429)
T ss_dssp CH------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTC
T ss_pred cH------HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHH
Confidence 87 576666432 122222234455555555577644
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=132.25 Aligned_cols=238 Identities=11% Similarity=-0.014 Sum_probs=134.4
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
.+|.|.+++...+.+. ...++..++ .. +.....+++++++++.+.+ -.++++||++|+..++..+.+
T Consensus 67 ~~p~v~~A~~~~~~~~-~~~~~~~~~--~~----~~~~~la~~l~~~~~~~~~---~v~~~~ggseA~~~al~~~~~~~~ 136 (459)
T 4a6r_A 67 GRKDFAEAARRQMEEL-PFYNTFFKT--TH----PAVVELSSLLAEVTPAGFD---RVFYTNSGSESVDTMIRMVRRYWD 136 (459)
T ss_dssp CCHHHHHHHHHHHHHC-SCCCTTSSS--CC----HHHHHHHHHHHHHSCTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-ccccccccc--CC----HHHHHHHHHHHHhCCCCCC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 3799999998777542 112222111 12 3333456688899987653 235567788999999998875
Q ss_pred -----CCCEEeecCCCCCccccCC----ccccc-cccccCcceEEEEeccc--cCCCCCCC--------HHHHHHHhhh-
Q 016668 191 -----PHDRIMGLDLPHGGHLSHG----FMTPK-RRVSGTSIYFESMPYRL--DESTGLVD--------YDMLEKTAIL- 249 (385)
Q Consensus 191 -----pGD~Vl~~~~~~ggh~s~~----~~~~~-~~~~~~g~~~~~i~~~~--~~~~~~iD--------~d~le~~i~~- 249 (385)
++|+|++.++.+.|+.... ..... .........+..++++. ..... .| +++|++.++.
T Consensus 137 ~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~ 215 (459)
T 4a6r_A 137 VQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI 215 (459)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc
Confidence 5799999887654331000 00000 00000111223343222 10111 45 7889988863
Q ss_pred --cCCcEEEEcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCcc
Q 016668 250 --FRPKLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG 318 (385)
Q Consensus 250 --~~pklIi~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~G 318 (385)
.++++|++++.+. +...+ +++|+++|+++|++||+|++|. |+...|... ..++ ..|++++ +|+|.|
T Consensus 216 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~pdi~t~--sK~l~g 292 (459)
T 4a6r_A 216 GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC-GFGRTGEWFGHQHFGFQPDLFTA--AKGLSS 292 (459)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEE--CGGGGT
T ss_pred CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeeh--hhhhcC
Confidence 3456777765432 23333 8999999999999999999984 543333211 0112 3577765 599865
Q ss_pred --ccEEEEEEeCCCCchhHHHHHHhhc---cCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 319 --PRGGMIFFKKDPVLGVELESAINNA---VFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 319 --prgG~I~~~~~~~~~~~~~~~i~~~---~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.|++++++ ++.+.+... ......+ .+....++...+|+.+..+++
T Consensus 293 g~~~lg~v~~~~------~i~~~~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~~~~ 344 (459)
T 4a6r_A 293 GYLPIGAVFVGK------RVAEGLIAGGDFNHGFTYS-GHPVCAAVAHANVAALRDEGI 344 (459)
T ss_dssp TSSCCEEEEECH------HHHHHHHHHCTTHHHHHHC-SCHHHHHHHHHHHHHHHHTCH
T ss_pred CCCCccceeeCH------HHHHHhhcCCCcccCCCCC-CCHHHHHHHHHHHHHHhcchH
Confidence 7889999887 677766521 1111222 333444444557775544444
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-12 Score=130.91 Aligned_cols=224 Identities=15% Similarity=0.067 Sum_probs=128.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHH--hccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA--ILKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~a--ll~p 191 (385)
.+|.|.+++...+.... .+. + -. +++...+++++++++ +.+ ..++++||++|+..++.. .+.+
T Consensus 69 ~~p~v~~a~~~~~~~~~--~~~---~--~~----~~~~~l~~~l~~~~~-~~~---~v~~~~~g~ea~~~al~~ar~~~~ 133 (424)
T 2e7u_A 69 AHPKVLARVRETLERGL--TFG---A--PS----PLEVALAKKVKRAYP-FVD---LVRFVNSGTEATMSALRLARGYTG 133 (424)
T ss_dssp TCHHHHHHHHHHHHTCS--CCS---S--CC----HHHHHHHHHHHHHCT-TCC---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCC--CCC---C--CC----HHHHHHHHHHHHhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 58999999988775421 111 1 11 333445567888885 332 135567789999998885 2345
Q ss_pred CCEEeecCCCCCccccCCcc-cccc--c---cccCcce----EEEEeccccCCCCCCCHHHHHHHhhh--cCCcEEEEcC
Q 016668 192 HDRIMGLDLPHGGHLSHGFM-TPKR--R---VSGTSIY----FESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGA 259 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~-~~~~--~---~~~~g~~----~~~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~ 259 (385)
+|+|++.++.+.|+...... .... . ....|.. ...+.++ ..|+++|++.+++ .++++|++++
T Consensus 134 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep 207 (424)
T 2e7u_A 134 RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLE------YNDPEGLREVLKRRGEEIAAIIFEP 207 (424)
T ss_dssp CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEEC------TTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCC------CCCHHHHHHHHHhCCCCEEEEEEeC
Confidence 57888888765442110000 0000 0 0011110 0111211 1489999998864 3567788765
Q ss_pred CC--CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccEEEEEEeCC
Q 016668 260 SA--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKD 329 (385)
Q Consensus 260 s~--~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-GprgG~I~~~~~ 329 (385)
.+ .|...+ +++|+++ +++|++||+|++|. |+. .|... ..+. ..|++ |++|+|. |.++|++++++
T Consensus 208 ~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~-~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~- 281 (424)
T 2e7u_A 208 VVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFR-LAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRR- 281 (424)
T ss_dssp SBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTT-SSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECH-
T ss_pred CCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccc-cchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcH-
Confidence 33 355566 9999999 99999999999996 663 22210 1112 35765 6679985 46889999987
Q ss_pred CCchhHHHHHHhh-c-cCCCccCCChHHHHHHHHHHHHHhhC
Q 016668 330 PVLGVELESAINN-A-VFPGLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 330 ~~~~~~~~~~i~~-~-~fp~~qg~p~~~~iaala~Al~e~~~ 369 (385)
++.+.+.. . .+.+..-+.+....++...+++.+.+
T Consensus 282 -----~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 318 (424)
T 2e7u_A 282 -----EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE 318 (424)
T ss_dssp -----HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 56666654 1 11111213344555555567765543
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-12 Score=129.82 Aligned_cols=229 Identities=12% Similarity=-0.010 Sum_probs=129.0
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
.+|.|.+++...+.. ....++. ....+ .....+++++++++.+.+ -.++++||++|+..++.++.+
T Consensus 61 ~~p~v~~A~~~~~~~-~~~~~~~---~~~~~----~~~~la~~l~~~~~~~~~---~v~~~~sGseA~~~al~~~~~~~~ 129 (448)
T 3dod_A 61 RKKELDDAIKKQLGK-IAHSTLL---GMTNV----PATQLAETLIDISPKKLT---RVFYSDSGAEAMEIALKMAFQYWK 129 (448)
T ss_dssp SCHHHHHHHHHHHTT-CSCCCCS---SSEEH----HHHHHHHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccCcccc---ccCCH----HHHHHHHHHHHhCCCCCC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 479999999877643 2211111 11223 333355678888865542 245667889999999988865
Q ss_pred -CC----CEEeecCCCCCccccCCccccccccccCcc------------eEEEEeccccCCCC-----------CCCHHH
Q 016668 191 -PH----DRIMGLDLPHGGHLSHGFMTPKRRVSGTSI------------YFESMPYRLDESTG-----------LVDYDM 242 (385)
Q Consensus 191 -pG----D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~------------~~~~i~~~~~~~~~-----------~iD~d~ 242 (385)
+| |+|++.++.+.|+... .+...+. .+..++++ +.. ..|+++
T Consensus 130 ~~G~~~~~~vi~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~ 199 (448)
T 3dod_A 130 NIGKPEKQKFIAMKNGYHGDTIG-------AVSVGSIELFHHVYGPLMFESYKAPIP---YVYRSESGDPDECRDQCLRE 199 (448)
T ss_dssp HTTCTTCCEEEEEC------------------------------------CEEECCC---CCTTSSSCCHHHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCCCccHH-------HHHhcCCccccccccCCCCCceEeCCC---ccccCCccchhhhhHHHHHH
Confidence 55 9999998765332110 1111111 11222211 111 125899
Q ss_pred HHHHhh--hcCCcEEEEcCCC-C--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEE
Q 016668 243 LEKTAI--LFRPKLIIAGASA-Y--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTT 310 (385)
Q Consensus 243 le~~i~--~~~pklIi~~~s~-~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~ 310 (385)
|++.++ ..++++|++++.+ + +...+ +++|+++|+++|++||+|++|. |+...|... ..++ ..|++++
T Consensus 200 le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t~ 278 (448)
T 3dod_A 200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT-GFGRTGKMFACEHENVQPDLMAA 278 (448)
T ss_dssp HHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE
T ss_pred HHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccchhhhhhcCCCCCEEEe
Confidence 999886 2346778877643 2 22222 8999999999999999999984 543333211 1112 3566654
Q ss_pred CCCccC-cc-ccEEEEEEeCCCCchhHHHHHHhhc------cCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 311 TTHKSL-RG-PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 311 S~hK~l-~G-prgG~I~~~~~~~~~~~~~~~i~~~------~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+|+| .| .+.|++++++ ++.+.+... ...+...+.+....++...+|+.+..+++
T Consensus 279 --sK~l~~G~~~ig~v~~~~------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 340 (448)
T 3dod_A 279 --GKGITGGYLPIAVTFATE------DIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENI 340 (448)
T ss_dssp --CGGGGTTSSCCEEEEEEH------HHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTH
T ss_pred --cccccCCcCceEEEEECH------HHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccH
Confidence 5998 45 3889999987 677776540 11122223344555555567776544444
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-13 Score=133.86 Aligned_cols=226 Identities=13% Similarity=0.092 Sum_probs=128.5
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHH---hcc
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA---ILK 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~a---ll~ 190 (385)
.+|.|.+++...+.... .+ ++. .++++..+++++++++ +.+ ..++++||++|+..++.+ +.+
T Consensus 74 ~~~~v~~a~~~~~~~~~--~~------~~~---~~~~~~la~~l~~~~~-~~~---~v~~~~gg~eA~~~al~~ar~~~~ 138 (453)
T 2cy8_A 74 GHPRVNAAIAEALSHGV--QY------AAS---HPLEVRWAERIVAAFP-SIR---KLRFTGSGTETTLLALRVARAFTG 138 (453)
T ss_dssp TCHHHHHHHHHHHTTTC--SS------CSS---CHHHHHHHHHHHHHCT-TCS---EEEEESCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCC--CC------CCC---CHHHHHHHHHHHhhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 68999999988775421 11 111 2566667788888886 332 235667888999999887 555
Q ss_pred CCCEEeecCCCCCccccCCccccccc----cccCcceE----EEEeccccCCCCCCCHHHHHHHhhh--cCCcEEEEcCC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRR----VSGTSIYF----ESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGAS 260 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~----~~~~g~~~----~~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~s 260 (385)
+|+|++.++.|.|+..... ..... ....|... ....++ ..|+++|++.+++ .++++|++++.
T Consensus 139 -~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep~ 210 (453)
T 2cy8_A 139 -RRMILRFEGHYHGWHDFSA-SGYNSHFDGQPAPGVLPETTANTLLIR------PDDIEGMREVFANHGSDIAAFIAEPV 210 (453)
T ss_dssp -CCEEEEECC-----------------------------CGGGEEEEC------TTCHHHHHHHHHHHGGGEEEEEECSS
T ss_pred -CCEEEEEcCCcCCCchhhH-hhcCCccCCCcCCCCCccccCceeecC------CCCHHHHHHHHHhcCCCEEEEEECCC
Confidence 4678777765533211000 00000 00011100 011111 1489999998864 25678887654
Q ss_pred C--CCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cccEEEEEEeCCC
Q 016668 261 A--YPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDP 330 (385)
Q Consensus 261 ~--~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-GprgG~I~~~~~~ 330 (385)
. .|...+ +++|+++|+++|++||+|++|. |+ ..|... ..+. ..|++ |++|+|. |+++|++++++
T Consensus 211 ~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~-- 284 (453)
T 2cy8_A 211 GSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGRE-- 284 (453)
T ss_dssp EHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECH--
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechH--
Confidence 3 244556 9999999999999999999995 76 323211 1112 35766 5669995 57899999987
Q ss_pred CchhHHHHHHhh---c-cCCCccCCChHHHHHHHHHHHHH-hhCchHH
Q 016668 331 VLGVELESAINN---A-VFPGLQGGPHNHTIGGLAVCLKH-AQSPEFK 373 (385)
Q Consensus 331 ~~~~~~~~~i~~---~-~fp~~qg~p~~~~iaala~Al~e-~~~~~~~ 373 (385)
++.+.+.. . .+.+..-+.++...++...+|+. + .+++.
T Consensus 285 ----~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~~~ 327 (453)
T 2cy8_A 285 ----DVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDDVC 327 (453)
T ss_dssp ----HHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HTTHH
T ss_pred ----HHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhhHH
Confidence 56665543 1 11111123445555666667776 5 34443
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-12 Score=128.57 Aligned_cols=243 Identities=11% Similarity=-0.017 Sum_probs=138.1
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
.+|.|.+++...+.. ...+++. .+ ..+ .....+++++++++.+.+ -.++++||++|+..++..+.+
T Consensus 71 ~~p~v~~A~~~~l~~-~~~~~~~-~~--~~~----~~~~la~~l~~~~~~~~~---~v~~~~sGseA~~~Aik~a~~~~~ 139 (476)
T 3i5t_A 71 GRREIVDAMAHQAMV-LPYASPW-YM--ATS----PAARLAEKIATLTPGDLN---RIFFTTGGSTAVDSALRFSEFYNN 139 (476)
T ss_dssp CCHHHHHHHHHHHHH-CCCCCTT-TC--BCH----HHHHHHHHHHTTSSTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccCcccC-cc--CCH----HHHHHHHHHHhcCCCCcC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 489999999887653 3323321 11 223 333455678888865543 135667899999999988763
Q ss_pred -----CCCEEeecCCCCCccccCCc-cccccc----cccCcceEEEEeccccCCCCCCC--------HHHHHHHhhh---
Q 016668 191 -----PHDRIMGLDLPHGGHLSHGF-MTPKRR----VSGTSIYFESMPYRLDESTGLVD--------YDMLEKTAIL--- 249 (385)
Q Consensus 191 -----pGD~Vl~~~~~~ggh~s~~~-~~~~~~----~~~~g~~~~~i~~~~~~~~~~iD--------~d~le~~i~~--- 249 (385)
.+++|++.++.+.|+..-.. .+.... .......+..++++........| +++|++.++.
T Consensus 140 ~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 219 (476)
T 3i5t_A 140 VLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP 219 (476)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG
T ss_pred hcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 36789988876533210000 000000 00001112333332211111122 7889988863
Q ss_pred cCCcEEEEcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--C-CCC-CCcEEEECCCccCcc-
Q 016668 250 FRPKLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--D-PFK-YCDVVTTTTHKSLRG- 318 (385)
Q Consensus 250 ~~pklIi~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~-p~~-gaDiv~~S~hK~l~G- 318 (385)
.++++|+++++.. +...+ +++|+++|+++|++||+|++|. |+...|... . .+. ..|++++| |+|.|
T Consensus 220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G 296 (476)
T 3i5t_A 220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT-GFGRCGEWFASEKVFGVVPDIITFA--KGVTSG 296 (476)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTT
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccCceeeecccCCCcchhhhh--hhhcCC
Confidence 3467888876533 22233 8999999999999999999984 553333221 1 222 45777654 99854
Q ss_pred -ccEEEEEEeCCCCchhHHHHHHhhc------cCCCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 319 -PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 319 -prgG~I~~~~~~~~~~~~~~~i~~~------~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
++.|++++++ ++.+.+... ...+..-+.++...+|..++|+.+.++++.++.
T Consensus 297 ~~plg~v~~~~------~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~ 355 (476)
T 3i5t_A 297 YVPLGGLAISE------AVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQA 355 (476)
T ss_dssp SSCCEEEEECH------HHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CcCeEEEEECH------HHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6888999877 677777543 122222233445555556678766555554433
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-12 Score=129.46 Aligned_cols=232 Identities=14% Similarity=0.040 Sum_probs=134.4
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
.+|.|.+++...+.. ....+...++ ..+ .....+++++++++.+.+ -.++++||++||..++..+.+
T Consensus 72 ~~p~v~~A~~~~~~~-~~~~~~~~~~--~~~----~~~~lae~l~~~~~~~~~---~v~~~~sGseA~~~aik~a~~~~~ 141 (472)
T 3hmu_A 72 GRDELAEVAARQMRE-LPYYNTFFKT--THV----PAIALAQKLAELAPGDLN---HVFFAGGGSEANDTNIRMVRTYWQ 141 (472)
T ss_dssp CCHHHHHHHHHHHHH-CSCCCSSSSE--ECH----HHHHHHHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cccccccccc--CCH----HHHHHHHHHHHhCCCCCC---EEEEeCCHHHHHHHHHHHHHHHHH
Confidence 379999999887754 2212222111 123 333345678888876543 235567889999999988865
Q ss_pred -----CCCEEeecCCCCCccccCCccccccccccCc-----------ceEEEEeccc--cCCCCCCC--------HHHHH
Q 016668 191 -----PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS-----------IYFESMPYRL--DESTGLVD--------YDMLE 244 (385)
Q Consensus 191 -----pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-----------~~~~~i~~~~--~~~~~~iD--------~d~le 244 (385)
++++|++.++.+.|+. .. .....+ ..+..++++. ....+ .| +++|+
T Consensus 142 ~~g~~~~~~ii~~~~~yHg~t-----~~--~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le 213 (472)
T 3hmu_A 142 NKGQPEKTVIISRKNAYHGST-----VA--SSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELE 213 (472)
T ss_dssp HTTCTTCCEEEEETTCCCCSS-----HH--HHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEEcCcCCCcc-----HH--hhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHH
Confidence 5789998887653321 00 111111 0233344222 10011 34 78888
Q ss_pred HHhhh---cCCcEEEEcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECC
Q 016668 245 KTAIL---FRPKLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTT 312 (385)
Q Consensus 245 ~~i~~---~~pklIi~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~ 312 (385)
+.+++ .++++|++++.+. +...+ +++|+++|+++|++||+|++| .|+...|... ..+. ..|++++|
T Consensus 214 ~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~-~gfgr~G~~~a~~~~~v~pdi~t~s- 291 (472)
T 3hmu_A 214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVI-CGFGRTGNWFGTQTMGIRPHIMTIA- 291 (472)
T ss_dssp HHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSCHHHHHTCCCSEEEEC-
T ss_pred HHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc-cCCcccCccchhHHhCCCCceeeec-
Confidence 88863 3456788865432 23344 899999999999999999998 4543333211 1112 35777654
Q ss_pred CccCcc--ccEEEEEEeCCCCchhHHHHHHhhccC-CCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 313 HKSLRG--PRGGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 313 hK~l~G--prgG~I~~~~~~~~~~~~~~~i~~~~f-p~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
|+|.| ++.|++++++ ++.+.++...+ .+..-+.+....+|..++|+.+.++++
T Consensus 292 -K~l~gg~~plG~v~~~~------~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~ 347 (472)
T 3hmu_A 292 -KGLSSGYAPIGGSIVCD------EVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENI 347 (472)
T ss_dssp -GGGTTTSSCCEEEEEEH------HHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTH
T ss_pred -hhhhcCCcceEEEEECH------HHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHH
Confidence 99965 7889999987 67777743221 121222334445554557776544444
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-11 Score=125.38 Aligned_cols=239 Identities=13% Similarity=0.038 Sum_probs=129.7
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc--C
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--P 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--p 191 (385)
.+|.|.+++...+..- .. +....+ -. +.....+++++++++.+..+ ..++++||++|+..++..+.. .
T Consensus 78 ~~p~v~~A~~~~~~~~-~~-~~~~~~--~~----~~~~~la~~l~~~~~~~~~~--~v~~~~sGseA~~~Alk~a~~~~g 147 (451)
T 3oks_A 78 SAPKVVEAVRSQVGDF-TH-TCFMVT--PY----EGYVAVCEQLNRLTPVRGDK--RSALFNSGSEAVENAVKIARSHTH 147 (451)
T ss_dssp TCHHHHHHHHHHHTTC-SC-CTTTTS--CC----HHHHHHHHHHHHHSSCCSSE--EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhc-cc-ccCCcc--CC----HHHHHHHHHHHHhCCcCCCC--EEEEeCcHHHHHHHHHHHHHHhcC
Confidence 3799999998776432 11 111111 12 23334556788888754211 245667899999999977653 4
Q ss_pred CCEEeecCCCCCccccCCc-cc----cc-cccccCcceEEEEeccc---------cCCC-CCCCHHHHHHHhhh----cC
Q 016668 192 HDRIMGLDLPHGGHLSHGF-MT----PK-RRVSGTSIYFESMPYRL---------DEST-GLVDYDMLEKTAIL----FR 251 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~-~~----~~-~~~~~~g~~~~~i~~~~---------~~~~-~~iD~d~le~~i~~----~~ 251 (385)
+|+|++.++.+.|+..... .+ .. .........+..++++. +.+. ...+++.+++.++. .+
T Consensus 148 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (451)
T 3oks_A 148 KPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADN 227 (451)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGG
T ss_pred CCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCC
Confidence 5889988876543311000 00 00 00000111234444431 1000 01234555454432 34
Q ss_pred CcEEEEcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-ccccE
Q 016668 252 PKLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RGPRG 321 (385)
Q Consensus 252 pklIi~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~Gprg 321 (385)
+++|++++.+. +...+ +++|+++|++||++||+|++|. |+...|... ..++ ..|++ |++|+| .|++.
T Consensus 228 ~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~i 304 (451)
T 3oks_A 228 LAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-GFARTGAMFACEHEGIDPDLI--VTAKGIAGGLPL 304 (451)
T ss_dssp EEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSC
T ss_pred EEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCccccchhhhhcCCCCCee--eehhhhhCCcce
Confidence 56777765321 22333 8999999999999999999984 553333211 1112 35676 455998 56788
Q ss_pred EEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 322 G~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
|++++++ ++.+.+.........++ +....++...+|+.+..+++
T Consensus 305 G~v~~~~------~~~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~~~~ 348 (451)
T 3oks_A 305 SAVTGRA------EIMDSPHVSGLGGTYGG-NPIACAAALATIETIESEGL 348 (451)
T ss_dssp EEEEEEH------HHHTCSCTTSBCCSSSS-CHHHHHHHHHHHHHHHHTTH
T ss_pred EEEEECH------HHHhhhcCCCcCCCCCC-CHHHHHHHHHHHHHHhhhhH
Confidence 9999887 57666654333333333 33444444456765544444
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-12 Score=127.92 Aligned_cols=238 Identities=16% Similarity=0.049 Sum_probs=129.4
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--cC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--~p 191 (385)
.+|.|.+++...+..- . .+....+ -. +.....+++++++++.+..+ ..++++||++|+..++..+. ..
T Consensus 81 ~~p~v~~A~~~~~~~~-~-~~~~~~~--~~----~~~~~la~~l~~~~~~~~~~--~v~~~~sGseA~~~alk~a~~~~g 150 (453)
T 4ffc_A 81 SHPAVAAAIADQATHF-T-HTCFMVT--PY----EQYVQVAELLNALTPGDHDK--RTALFNSGAEAVENAIKVARLATG 150 (453)
T ss_dssp TCHHHHHHHHHHHHHC-S-CCTTTTS--CC----HHHHHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhc-c-ccccCcC--CC----HHHHHHHHHHHHhCCCCCCc--EEEEeCcHHHHHHHHHHHHHHhcC
Confidence 4899999998776542 1 1221111 12 33334566788998754211 24566788999999997664 35
Q ss_pred CCEEeecCCCCCccccCCc-cc----cc-cccccCcceEEEEeccccC-CCCCCC--------HHHHHHHhhhcCCcEEE
Q 016668 192 HDRIMGLDLPHGGHLSHGF-MT----PK-RRVSGTSIYFESMPYRLDE-STGLVD--------YDMLEKTAILFRPKLII 256 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~-~~----~~-~~~~~~g~~~~~i~~~~~~-~~~~iD--------~d~le~~i~~~~pklIi 256 (385)
+|+|++.++.+.|+..... .+ .. .........+..++++... +....+ .+.|++.+...++.+|+
T Consensus 151 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi 230 (453)
T 4ffc_A 151 RPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAII 230 (453)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred CCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6899988876543311000 00 00 0000011123444443211 011122 35566655433455666
Q ss_pred EcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----CCcEEEECCCccC-ccccEEEEE
Q 016668 257 AGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSL-RGPRGGMIF 325 (385)
Q Consensus 257 ~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~----gaDiv~~S~hK~l-~GprgG~I~ 325 (385)
+++.+. +...+ +++|+++|+++|++||+|++| .|+...|.. ..++ ..|+++ ++|++ .|++.|+++
T Consensus 231 ~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~-~g~g~~g~~-~a~~~~~~~pdi~t--~sK~~~~G~~~G~~~ 306 (453)
T 4ffc_A 231 IEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQ-TGFARTGAW-FASEHEGIVPDIVT--MAKGIAGGMPLSAVT 306 (453)
T ss_dssp ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSS-STHHHHTCCCSEEE--ECGGGGTTSSCEEEE
T ss_pred EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCc-cCCCccccc-chhhhcCCCcchHh--hhhhhcCCcCeEEEE
Confidence 654321 22333 899999999999999999998 454333321 1111 346665 45998 467889999
Q ss_pred EeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 326 FKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 326 ~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+++ ++.+.+.........+++ ....++...+|+.+..+++
T Consensus 307 ~~~------~i~~~~~~~~~~~t~~~~-~~~~aaa~aal~~~~~~~~ 346 (453)
T 4ffc_A 307 GRA------ELMDAVYAGGLGGTYGGN-PVTCAAAVAALGVMRELDL 346 (453)
T ss_dssp EEH------HHHTTSCTTSSCCSSSSC-HHHHHHHHHHHHHHHHTTH
T ss_pred ECH------HHHhhhcccCcCCCCCcC-HHHHHHHHHHHHHhhhhhH
Confidence 887 576666544333333333 3444444456765544444
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=129.49 Aligned_cols=228 Identities=10% Similarity=0.004 Sum_probs=126.5
Q ss_pred CcHHHH-H-HHhh---HhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCCCCCcceeecCCcHHHHHHHHHH
Q 016668 114 TSRAVM-E-AVGS---CLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFN-LDENKWGVNVQPLSGSPANFEVYTA 187 (385)
Q Consensus 114 ~s~~V~-~-al~s---~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg-~~~~~~~~~V~~~sGs~A~~~a~~a 187 (385)
.+|.|. + ++.. .+.. ... +. .++ ..+...+ .+++++++++ .+.+ -.+++.||++|+..++..
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~-~~~-~~-~~~--~~~~~~~----la~~la~~~~~~~~~---~v~~~~~gseA~~~aik~ 138 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAAL-NKP-SN-SDV--YSVAMAR----FVETFARVLGDPALP---HLFFVEGGALAVENALKA 138 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHT-CCC-CT-TTC--CCHHHHH----HHHHHHHHHCCTTCC---EEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh-cCC-CC-ccc--CCHHHHH----HHHHHHHhcCCCCCC---EEEEeCchHHHHHHHHHH
Confidence 478999 8 8887 5432 211 11 112 2232223 3456888886 3332 235567789999999875
Q ss_pred hc---c----------C-CCEEeecCCCCCccccCCccccccccccCcc-----------eEEEEeccccC--CC-----
Q 016668 188 IL---K----------P-HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI-----------YFESMPYRLDE--ST----- 235 (385)
Q Consensus 188 ll---~----------p-GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~-----------~~~~i~~~~~~--~~----- 235 (385)
+. + | ||+|++.++.+.|+... .+...+. ......++.+. ..
T Consensus 139 a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 211 (449)
T 2cjg_A 139 AFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGY-------TLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMA 211 (449)
T ss_dssp HHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTT-------GGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHH
T ss_pred HHHHhcccccccccccCCCCEEEEECCCcCCcccc-------hhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccc
Confidence 43 2 2 99999999866443211 0111110 00122222321 00
Q ss_pred --CCCCHHHHHHHhhh--cCCcEEEEcCCCC--CCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC
Q 016668 236 --GLVDYDMLEKTAIL--FRPKLIIAGASAY--PRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK 303 (385)
Q Consensus 236 --~~iD~d~le~~i~~--~~pklIi~~~s~~--~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~ 303 (385)
...|+++|++.+++ .++++|++++.++ |...+ +++|+++|+++|++||+|++|. |+...|... ..++
T Consensus 212 ~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~ 290 (449)
T 2cjg_A 212 ALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-GCGLTGTAWAYQQLD 290 (449)
T ss_dssp HHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSTHHHHT
T ss_pred hhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-CCCccCcceeecccC
Confidence 02466778888853 3567888876433 43445 9999999999999999999995 554333211 1112
Q ss_pred -CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHh-----hccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 304 -YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN-----NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 304 -gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~-----~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
..|+++ ++|+| +.|++++++ ++.+.+. ........ +.+....+|...+|+.+.++++.
T Consensus 291 ~~~di~t--~sK~l---~iG~~~~~~------~~~~~l~~~~~~~~~~~~t~-~~n~~~~~aa~aal~~~~~~~~~ 354 (449)
T 2cjg_A 291 VAPDIVA--FGKKT---QVCGVMAGR------RVDEVADNVFAVPSRLNSTW-GGNLTDMVRARRILEVIEAEGLF 354 (449)
T ss_dssp CCCSEEE--ECGGG---SSEEEEECG------GGGGSTTCTTTSTTSSCCSS-SSCHHHHHHHHHHHHHHHHHTHH
T ss_pred CCceEEE--ecCcc---cEEEEEECH------HHhhhhhhcccCCcccccCC-CCCHHHHHHHHHHHHHHHhccHH
Confidence 457765 45998 467777776 3444321 11111222 33445555556678765544443
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=121.81 Aligned_cols=183 Identities=14% Similarity=0.022 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCC----EEeecCCCCCccccCCccccccccccCcc
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (385)
++++.+++++. ..|.+... ..+|.+++|+ +|+..++.++++||| +|++.+|.|.++.. .+...|.
T Consensus 72 ~lr~aia~~~~-~~g~~~~~-~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~--------~~~~~g~ 141 (391)
T 3bwn_A 72 ELEDAIKDLHG-VVGNAATE-DRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVE--------ETTYVRS 141 (391)
T ss_dssp HHHHHHHHHHH-HHCSBCCS-SSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHH--------HHHTTCB
T ss_pred HHHHHHHHHHH-hcCCCCCC-CCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHH--------HHHHcCC
Confidence 67776666655 44554211 0146666765 599999999999999 99999997765432 2345565
Q ss_pred eEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCC
Q 016668 223 YFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF 302 (385)
Q Consensus 223 ~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~ 302 (385)
.+..++ +|.+. ++ ..++|+|+++.++||+-.-+++|++.++++++++|+|++|+.+ . ..++
T Consensus 142 ~~~~~~--~d~~~--l~---------~~~~k~v~l~~p~NPtG~~~~~l~~~~~~~~~~ii~De~y~~~-----~-~~~l 202 (391)
T 3bwn_A 142 GMYKWE--GDAWG--FD---------KKGPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWP-----H-YTPI 202 (391)
T ss_dssp TTEEEE--EESTT--CC---------CCSCEEEEEESSCTTTCCCCCCCC-----CCCEEEEECTTCST-----T-TSCC
T ss_pred eEEEec--CCHHH--cC---------CCCCEEEEECCCCCCCchhHHHHHHHhhcCCCEEEEeCCCCCC-----C-CCcc
Confidence 444444 44321 22 1368999888888774322335544222334999999998631 1 1223
Q ss_pred C---CCcEEEECCCccC--ccccEEEEEE-eCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 303 K---YCDVVTTTTHKSL--RGPRGGMIFF-KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 303 ~---gaDiv~~S~hK~l--~GprgG~I~~-~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
. +.+++++|+||++ +|+|.|++++ ++ ++.+.+........ .+++.....+.+.+++.
T Consensus 203 ~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~------~l~~~l~~~~~~~~-~~~~~~~q~a~~~~l~~ 265 (391)
T 3bwn_A 203 TRRQDHDIMLFTFSKITGHAGSRIGWALVKDK------EVAKKMVEYIIVNS-IGVSKESQVRTAKILNV 265 (391)
T ss_dssp CCCBCCSEEEEEHHHHHSCGGGCEEEEEECCH------HHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEechhhcCCCccceEEEEecCH------HHHHHHHHHhcccc-cCCCHHHHHHHHHHHhC
Confidence 2 4568999999996 6889999997 54 56666654322111 23444444455556654
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=124.60 Aligned_cols=179 Identities=13% Similarity=0.042 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCcceeecCCc-HHHHHHHHHHh--------ccCCCEEeecCCCCCccccCCcccccc
Q 016668 147 DELETLCQKRALAAFN--LDENKWGVNVQPLSG-SPANFEVYTAI--------LKPHDRIMGLDLPHGGHLSHGFMTPKR 215 (385)
Q Consensus 147 ~~le~~~~~~la~lfg--~~~~~~~~~V~~~sG-s~A~~~a~~al--------l~pGD~Vl~~~~~~ggh~s~~~~~~~~ 215 (385)
.++++.+++++.+..+ ++.+ +|.+++| ++|+..++.++ ++|||+|++.+|.|.++..
T Consensus 103 ~~lr~aia~~~~~~~~~~~~~~----~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~-------- 170 (427)
T 2hox_A 103 FELEKTIKELHEVVGNAAAKDR----YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE-------- 170 (427)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTC----EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCcCCCCC----EEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH--------
Confidence 3788777777766544 3332 4555555 56999999999 9999999999987754421
Q ss_pred ccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccccccc
Q 016668 216 RVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHISGLV 293 (385)
Q Consensus 216 ~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~Gli 293 (385)
.+...|..+. .+ .+|+++|++.++. ++|+|+++.++|| ...+ + +++ ++..++|++++-.
T Consensus 171 ~~~~~g~~~~--~~-------~~d~~~l~~~~~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~-- 231 (427)
T 2hox_A 171 QTKYFDKKGY--VW-------AGNAANYVNVSNP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWP-- 231 (427)
T ss_dssp HHHHSCBTTE--EE-------EEEGGGGTTCSCG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCST--
T ss_pred HHHHcCCeee--ee-------cCCHHHHHHhhcC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCC--
Confidence 2334454322 22 2566777777754 6899888777776 3455 3 333 5678899876421
Q ss_pred ccCcccC--CCC-CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHH
Q 016668 294 AASVVAD--PFK-YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKH 366 (385)
Q Consensus 294 ~~g~~~~--p~~-gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e 366 (385)
.++ .+. +.+++++|+||++ +|.|.|+++++++ ++.+++.........+.+...+.+ .+.+|+.
T Consensus 232 ----~~s~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~-----~l~~~l~~~~~~~~~~~~~~~q~a-~~~~L~~ 299 (427)
T 2hox_A 232 ----HYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDE-----SVYNNLLNYMTKNTEGTPRETQLR-SLKVLKE 299 (427)
T ss_dssp ----TTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCH-----HHHHHHHHHHHHHTSSCCHHHHHH-HHHHHHH
T ss_pred ----CCCccccCCCceEEEEeChhcCCCCCceEEEEEECCH-----HHHHHHHHHHHhcCCCCCHHHHHH-HHHHhhc
Confidence 111 122 4679999999987 6788999999643 677776654333223334443443 3445554
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-12 Score=133.43 Aligned_cols=220 Identities=17% Similarity=0.099 Sum_probs=127.0
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHc-CCCCCCCcceeecCCcHHHHHHHHHHh--cc
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAF-NLDENKWGVNVQPLSGSPANFEVYTAI--LK 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lf-g~~~~~~~~~V~~~sGs~A~~~a~~al--l~ 190 (385)
.+|.|.+++...+......+|+ + +.+...++++++++ +.+. .++++||++|+..++..+ ..
T Consensus 117 ~~p~V~~Av~~q~~~~~~~~~~-------~----~~~~~Lae~L~~~~p~~~~-----v~~~nSGseA~~~Aik~ar~~t 180 (465)
T 2yky_A 117 SHPVIRAAVERALAVGLNLSTQ-------T----ENEALFAEAVCDRFPSIDL-----VRFTNSGTEANLMALATATAIT 180 (465)
Confidence 3799999988766542111111 1 22333445677888 4433 356778999999998765 34
Q ss_pred CCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh--cCCcEEEEcCC--CCCCCC
Q 016668 191 PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGAS--AYPRDF 266 (385)
Q Consensus 191 pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~s--~~~~~~ 266 (385)
.+|+|++.+..+.|+.. +... .....|.....+.++ ..|+++|++.++. .++++|++++. +.+...
T Consensus 181 gr~~ii~~~~~yHG~~~-~~~s---g~~~~g~~~~~~~~~------~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~ 250 (465)
T 2yky_A 181 GRKTVLAFDGGYHGGLL-NFAS---GHAPTNAPYHVVLGV------YNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVP 250 (465)
Confidence 56999988865533211 1000 000112100122222 2478899988863 36788888653 234333
Q ss_pred C----HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----CCcEEEECCCccCc-cccEEEEEEeCCCCchhHHH
Q 016668 267 D----YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELE 337 (385)
Q Consensus 267 d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~----gaDiv~~S~hK~l~-GprgG~I~~~~~~~~~~~~~ 337 (385)
+ +++|+++|+++|++||+|++|. + .. +. ...++ ..|++ |++|++. |.+.|++++++ ++.
T Consensus 251 ~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~-g~-~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~------~i~ 318 (465)
T 2yky_A 251 AERAFLDLLRAEASRCGALLIFDEVMT-S-RL-SG-GGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRR------DLM 318 (465)
Confidence 3 8999999999999999999997 4 22 21 11122 24655 6779984 46779999888 465
Q ss_pred HHHhh---c-cCC-CccCCChHHHHHHHHHHHHHhhCchH
Q 016668 338 SAINN---A-VFP-GLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 338 ~~i~~---~-~fp-~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+.+.. . .+. +..+ .++...++..++|+.+.++++
T Consensus 319 ~~l~~~~~g~~~~~~T~~-~npla~aAa~aaL~~l~~~~~ 357 (465)
T 2yky_A 319 ERFDPARDGAFAHAGTFN-NNILTMSAGHAALTQIYTRQA 357 (465)
Confidence 65544 1 122 2222 233344444456766655444
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-10 Score=113.39 Aligned_cols=225 Identities=20% Similarity=0.140 Sum_probs=126.7
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc--cCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--KPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--~pG 192 (385)
+|.|.+|+...+..-...+. -++ ++....+++++++.--. ...+++|||+||..++.... ...
T Consensus 105 hp~v~~Av~~q~~~~~~~~~-------~~~----~~~~lae~l~~~~p~~~----~v~f~~SGsEA~e~AiklAr~~tgr 169 (454)
T 4ao9_A 105 APEIRDAVIEAMQGGINLTG-------HNL----LEGRLARLICERFPQIE----QLRFTNSGTEANLMALTAALHFTGR 169 (454)
T ss_dssp CHHHHHHHHHHHHTCSCCCS-------EES----SHHHHHHHHHHHSTTCS----EEEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhcCCCccC-------CcH----HHHHHHHHHHHhCCCCC----EEEEeCchHHHHHHHHHHHHhcccC
Confidence 79999998877754222111 112 22233456777775322 13556899999999987653 345
Q ss_pred CEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCC--cEEEEcCC--CCCCCCC-
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRP--KLIIAGAS--AYPRDFD- 267 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~p--klIi~~~s--~~~~~~d- 267 (385)
++|+..+-.|.|+.. +. .. ...-....+....++ .-|.+.+++.++++.+ .+||+.+. +.+...+
T Consensus 170 ~~ii~~~~~yHG~t~-~~-~~--~~~~~~~~~~~~~~p------~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~ 239 (454)
T 4ao9_A 170 RKIVVFSGGYHGGVL-GF-GA--RPSPTTVPFDFLVLP------YNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQ 239 (454)
T ss_dssp CEEEEETTCBCSTTC-BB-SS--SBCTTSCCSEEEEEC------TTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECC
T ss_pred CeEEEEeCCcCCccc-cc-cc--cccCccCCCCcccCC------CchHHHHHHHHhhcCCceEEEEeccccCCCCccCCc
Confidence 678877644322211 10 00 000011111222222 2488999999876444 45676542 2333333
Q ss_pred ---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccCc-cccEEEEEEeCCCCchhHHHHHHhh
Q 016668 268 ---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLR-GPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 268 ---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~-GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+++|+++|+++|++||+|+.|+ |-...+....-+. ..|+++.+ |.+. |...|.+.+++ ++.+.++.
T Consensus 240 ~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~------ei~~~~~~ 310 (454)
T 4ao9_A 240 PDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRA------DVMALFDP 310 (454)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECH------HHHGGGCT
T ss_pred hhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHH------HHHHHHhh
Confidence 8999999999999999999996 6432221111112 35887655 8874 44567777877 67776653
Q ss_pred ccCCCccC---CChHHHHHHHHHHHHHhhCchHH
Q 016668 343 AVFPGLQG---GPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 343 ~~fp~~qg---~p~~~~iaala~Al~e~~~~~~~ 373 (385)
..-+..++ +-++..++|-.++|+.+.++++.
T Consensus 311 ~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~ 344 (454)
T 4ao9_A 311 RTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAA 344 (454)
T ss_dssp TTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHH
T ss_pred ccCCccccCCCCCCHHHHHHHHHHHHHHhccChh
Confidence 32222222 23344555555678888777653
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-10 Score=116.23 Aligned_cols=228 Identities=14% Similarity=0.118 Sum_probs=124.6
Q ss_pred CcHHHHHHHhhHhhcc-CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc---
Q 016668 114 TSRAVMEAVGSCLTNK-YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~-y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--- 189 (385)
.+|.|.+++...+... +..+ + . + |+....++++.++++++++++...+ -.+++.||++||..++..+.
T Consensus 80 ~~p~v~~A~~~~~~~~~~~~~-~--~-~-~~~~~~~l~~~la~~l~~~~~~~~~---~v~f~~sGseA~~~Aik~a~~~~ 151 (472)
T 1ohv_A 80 SHPALVKLVQQPQNVSTFINR-P--A-L-GILPPENFVEKLRESLLSVAPKGMS---QLITMACGSCSNENAFKTIFMWY 151 (472)
T ss_dssp TCHHHHHHHHCGGGHHHHHCC-C--C-T-TTSCBTTHHHHHHHTGGGGCCTTCC---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccccc-c--c-c-ccccHHHHHHHHHHHHHHhCCCCcC---EEEEeCCchhHHHHHHHHHHHHh
Confidence 4899999998764321 1111 0 1 1 1111125665555566666644332 23567889999999998763
Q ss_pred ----c------------------CC---CEEeecCCCCCccccCCccccccccccCcce-----------EEEEecccc-
Q 016668 190 ----K------------------PH---DRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-----------FESMPYRLD- 232 (385)
Q Consensus 190 ----~------------------pG---D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-----------~~~i~~~~~- 232 (385)
+ || |+|++.++.+.|+.. . .+...|.. +..++++..
T Consensus 152 ~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~-----~--~~~~~g~~~~~~~~~~~~~~~~~~~p~~~ 224 (472)
T 1ohv_A 152 RSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTM-----G--CLATTHSKAIHKIDIPSFDWPIAPFPRLK 224 (472)
T ss_dssp HHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSH-----H--HHHHCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred hhhccCcccccccccccccccccccCCCCeEEEECCCcccccH-----H--HHhcCCCccccccCCCCCCCcccCCCccc
Confidence 1 56 899998865533211 0 11111110 011122110
Q ss_pred -C--CC-------CCCCHHHHHHHhhhc-----CCcEEEEcCC--CCCCCCC----HHHHHHHHHHcCcEEEEecccccc
Q 016668 233 -E--ST-------GLVDYDMLEKTAILF-----RPKLIIAGAS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISG 291 (385)
Q Consensus 233 -~--~~-------~~iD~d~le~~i~~~-----~pklIi~~~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~G 291 (385)
+ .. ...|+++|++.+++. ++++|++++. ..|...+ +++|+++|+++|++||+|++|. |
T Consensus 225 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g 303 (472)
T 1ohv_A 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-G 303 (472)
T ss_dssp SSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred CccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc-C
Confidence 0 00 023688999988652 6788888653 2455556 9999999999999999999995 5
Q ss_pred ccccCcccCCCC--C----CcEEEECCCcc-CccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHH
Q 016668 292 LVAASVVADPFK--Y----CDVVTTTTHKS-LRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCL 364 (385)
Q Consensus 292 li~~g~~~~p~~--g----aDiv~~S~hK~-l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al 364 (385)
+...|... .++ + .|++++ +|+ +. ||+++ ++ ++. .+......+..+ .+...+++..++|
T Consensus 304 ~g~~g~~~-~~~~~gv~~~~Di~t~--sK~~l~---GG~~~-~~------~~~-~~~~~~~~~T~~-~~~~~~aaa~aal 368 (472)
T 1ohv_A 304 GGSTGKFW-AHEHWGLDDPADVMTF--SKKMMT---GGFFH-KE------EFR-PNAPYRIFNTWL-GDPSKNLLLAEVI 368 (472)
T ss_dssp TTTTSSSS-GGGGGCCSSCCSEEEE--CGGGSS---EEEEE-CG------GGS-CSSSSSSCCSSS-SCHHHHHHHHHHH
T ss_pred CCCCCCch-hccccCCCCCCCEEEE--cccccc---CCccC-ch------hhc-ccccccccCccC-ccHHHHHHHHHHH
Confidence 43333211 111 2 677654 498 54 47766 43 331 111111122222 3445555556677
Q ss_pred HHhhCchH
Q 016668 365 KHAQSPEF 372 (385)
Q Consensus 365 ~e~~~~~~ 372 (385)
+.+.++++
T Consensus 369 ~~~~~~~~ 376 (472)
T 1ohv_A 369 NIIKREDL 376 (472)
T ss_dssp HHHHHTTH
T ss_pred HHHHhCCH
Confidence 76654444
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.6e-07 Score=91.23 Aligned_cols=238 Identities=16% Similarity=0.105 Sum_probs=123.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
-+|.|.+|+...+.. ..+... +..-++ .+....+++.+++..+..+ ..++++|||+|+..++... ...
T Consensus 81 ~~p~v~~Ai~~q~~~-~~~~~~---~~~~~~----~~~~lae~L~~~~p~~~~~--~v~f~~sGsEA~e~AlklAr~~t~ 150 (456)
T 4atq_A 81 SDPAVVAAVQEAAAH-FTHTCF---MVTPYE----GYVAVTEQLNRLTPGDHAK--RTVLFNSGAEAVENAVKVARLATG 150 (456)
T ss_dssp TCHHHHHHHHHHHHH-CSCCTT---TTSCCH----HHHHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhh-ccCccc---CccCcH----HHHHHHHHHHHhCCCCCCc--EEEEeCChHHHHHHHHHHHhhhhc
Confidence 378888888776543 221111 111122 1112345677887644211 2345689999999998654 345
Q ss_pred CCEEeecCCCCCccccCCccccc------c---cccc--CcceEEEEeccc--cCCC-CCCCHHHHHHHhh-------hc
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPK------R---RVSG--TSIYFESMPYRL--DEST-GLVDYDMLEKTAI-------LF 250 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~------~---~~~~--~g~~~~~i~~~~--~~~~-~~iD~d~le~~i~-------~~ 250 (385)
.++|+...-.| ||..... . .... ....+..+|++. .... ...+.+.+++.++ ..
T Consensus 151 r~~ii~~~~~y-----HG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 225 (456)
T 4atq_A 151 RDAVVAFDHAY-----HGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGD 225 (456)
T ss_dssp CCEEEEETTCC-----CCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred CCeEEEEeccc-----CCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCC
Confidence 67888776433 2221000 0 0000 011123334322 1111 1233444433332 22
Q ss_pred CCcEEEEcCC--CCC----CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-ccc
Q 016668 251 RPKLIIAGAS--AYP----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GPR 320 (385)
Q Consensus 251 ~pklIi~~~s--~~~----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-Gpr 320 (385)
+...||+.+. ..+ ...-+++|+++|++||++||+|+.+ .|+.-.|... ..+. ..|+++++ |.+. |..
T Consensus 226 ~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~-tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P 302 (456)
T 4atq_A 226 QVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQ-SGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLP 302 (456)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSS
T ss_pred ceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccc-cccCCccccccccccCCCCchhhhh--hcccCcCC
Confidence 3456777642 122 2234899999999999999999998 4542223211 1122 46898876 8874 345
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 321 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
.|.+++++ ++.+.+.......+.++ |+...++..++|+.+.++++.+.+
T Consensus 303 ~~av~~~~------~i~~~~~~~~~~~Tf~g-npla~aaala~L~~i~~~~l~~~~ 351 (456)
T 4atq_A 303 LSAITGRA------DLLDAVHPGGLGGTYGG-NPVACAAALAAIDTMEQHDLNGRA 351 (456)
T ss_dssp CEEEEEEH------HHHTTSCTTSSCCSSSS-CHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred ceeeEecH------HHHhcccccCCCCCCCC-ChHHHHhhHHHHHHHhhccHHHHH
Confidence 56677777 56655544333334433 444555555578777766664433
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=81.71 Aligned_cols=235 Identities=15% Similarity=0.108 Sum_probs=121.3
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGG-NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL--- 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G-~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all--- 189 (385)
-.|.|.+++...+..-.. +. .+++. ++ .+....+++.++...+.+ -..+..|||+|+..++....
T Consensus 84 ~~p~v~~Ai~~q~~~l~~--~~--~~~~~~~~----~~~~lAe~L~~~~p~~~~---~v~f~~sGsEA~e~AiKlAr~~~ 152 (473)
T 4e3q_A 84 DHKGLIDAAKAQYERFPG--YH--AFFGRMSD----QTVMLSEKLVEVSPFDSG---RVFYTNSGSEANDTMVKMLWFLH 152 (473)
T ss_dssp CCHHHHHHHHHHHHHCCC--CC--CCTTEEEH----HHHHHHHHHHHHSSCSSC---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--cc--ccccccCH----HHHHHHHHHHhhCCCCcc---EEEEeCchHHHHHHHHHHHHHHH
Confidence 379999998877654211 10 11111 22 122245678888765432 13456789999999987542
Q ss_pred ----cCC-CEEeecCCCCCccccCCccccccccccCc-----------ceEEEEecc----ccCCCCCC-------CHHH
Q 016668 190 ----KPH-DRIMGLDLPHGGHLSHGFMTPKRRVSGTS-----------IYFESMPYR----LDESTGLV-------DYDM 242 (385)
Q Consensus 190 ----~pG-D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g-----------~~~~~i~~~----~~~~~~~i-------D~d~ 242 (385)
+++ .+|+...-.| ||.... .++..+ -.+..++++ .. +.+.. ..++
T Consensus 153 ~~~g~~~r~~ii~~~~~y-----HG~t~~--a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~ 224 (473)
T 4e3q_A 153 AAEGKPQKRKILTRWNAY-----HGVTAV--SASMTGKPYNSVFGLPLPGFVHLTCPHYWRYG-EEGETEEQFVARLARE 224 (473)
T ss_dssp HHTTCTTCCEEEEETTCC-----CCSSHH--HHHHSCCGGGGGGTCSCTTEEEECCCCHHHHS-CTTCCHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEeeceE-----CCCccc--cccccccccccccCCCCCcccccCCCcccccc-cccchhhHHHHHHHHH
Confidence 233 4677665332 332100 001111 011222221 11 11111 1244
Q ss_pred HHHHhhhcC---CcEEEEcCC--CCC----CCCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEE
Q 016668 243 LEKTAILFR---PKLIIAGAS--AYP----RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTT 310 (385)
Q Consensus 243 le~~i~~~~---pklIi~~~s--~~~----~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~ 310 (385)
+++.+.... ...||+.+. ..+ ...-+++|+++|+++|++||.|+.+ .|+.-.|... .-++ ..|+++.
T Consensus 225 l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~-tGfGRtG~~fa~e~~gv~PDi~t~ 303 (473)
T 4e3q_A 225 LEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVI-CGFGRTGNTWGCVTYDFTPDAIIS 303 (473)
T ss_dssp HHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTT-TSSSTTSSSCHHHHTTCCCSEEEE
T ss_pred HHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCcc-ccCCcccchhHHHhcCCCCChHHh
Confidence 555554322 345666542 122 2233899999999999999999998 4542222211 1122 4688876
Q ss_pred CCCccCc-c-ccEEEEEEeCCCCchhHHHHHHhhc------cCCCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 311 TTHKSLR-G-PRGGMIFFKKDPVLGVELESAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 311 S~hK~l~-G-prgG~I~~~~~~~~~~~~~~~i~~~------~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
+ |.+. | ...|.+++++ ++.+.+... .+.+..-+-|+...|+..++|+.+.++++.+..
T Consensus 304 ~--K~l~gG~~Pl~av~~~~------~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~ 369 (473)
T 4e3q_A 304 S--KNLTAGFFPMGAVILGP------ELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENV 369 (473)
T ss_dssp C--GGGGTTSSCCEEEEECH------HHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred c--ccccCCCCCcccccccH------HHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHH
Confidence 5 9884 4 4667777777 566655432 112222223445555555578777776664433
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-05 Score=85.75 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=71.4
Q ss_pred HHHHHHhhh-------cCCcEEEEcCC--CC-CCCC----CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC---
Q 016668 241 DMLEKTAIL-------FRPKLIIAGAS--AY-PRDF----DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--- 303 (385)
Q Consensus 241 d~le~~i~~-------~~pklIi~~~s--~~-~~~~----dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--- 303 (385)
++|++.+++ .++.+||+.+. .. +... -+++|+++|++||++||+|++| .|+.-.|... ..+
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~-tGfGRtG~~f-a~e~~g 654 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVF-TGFWRLGVET-TTELLG 654 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTT-TTTTTTSBSS-THHHHS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCc-cccccCCCch-hhHhcC
Confidence 567777752 23457777653 22 2222 2899999999999999999997 4543333221 111
Q ss_pred -CCcEEEECCCccCcc--ccEEEEEEeCCCCchhHHHHHHhhc-----cCCCccCCChHHHHHHHHHHHHHhhCch
Q 016668 304 -YCDVVTTTTHKSLRG--PRGGMIFFKKDPVLGVELESAINNA-----VFPGLQGGPHNHTIGGLAVCLKHAQSPE 371 (385)
Q Consensus 304 -gaDiv~~S~hK~l~G--prgG~I~~~~~~~~~~~~~~~i~~~-----~fp~~qg~p~~~~iaala~Al~e~~~~~ 371 (385)
..|++| +.|.|.| .+.|++++++ ++.+.+... .+.+..-+.++...|+..++|+.+.+++
T Consensus 655 v~PDiit--lsK~L~gG~~Plgav~~~~------~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~ 722 (831)
T 4a0g_A 655 CKPDIAC--FAKLLTGGMVPLAVTLATD------AVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPE 722 (831)
T ss_dssp SCCSEEE--ECGGGGTTSSCCEEEEECH------HHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTT
T ss_pred CCCcEEE--EecccccCccCcEEEEECH------HHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhH
Confidence 357775 5699965 3668888887 576666432 1122222334455555555777665544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 385 | ||||
| d1rv3a_ | 470 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Rab | 1e-119 | |
| d2a7va1 | 463 | c.67.1.4 (A:26-488) Serine hydroxymethyltransferas | 1e-116 | |
| d1dfoa_ | 416 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Esc | 1e-111 | |
| d1kl1a_ | 405 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Bac | 1e-111 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 3e-31 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 8e-29 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 3e-25 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 2e-21 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 2e-04 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 4e-04 |
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 470 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 351 bits (902), Expect = e-119
Identities = 198/311 (63%), Positives = 234/311 (75%), Gaps = 9/311 (2%)
Query: 77 SFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPG 136
+ L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS G PG
Sbjct: 6 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPG 65
Query: 137 KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIM 196
+RYYGG E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIM
Sbjct: 66 QRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIM 125
Query: 197 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLII 256
GLDLP GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLII
Sbjct: 126 GLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII 185
Query: 257 AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSL 316
AG S Y R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+L
Sbjct: 186 AGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTL 245
Query: 317 RGPRGGMIFFKKD---------PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHA 367
RG R GMIF+++ + LES IN+AVFPGLQGGPHNH I G+AV LK A
Sbjct: 246 RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA 305
Query: 368 QSPEFKVYQNK 378
+PEFK YQ +
Sbjct: 306 MTPEFKEYQRQ 316
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 463 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Score = 344 bits (883), Expect = e-116
Identities = 193/309 (62%), Positives = 236/309 (76%), Gaps = 9/309 (2%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 7 SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 66
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E +DE+E LCQ+RAL AF+LD +WGVNVQP SGSPAN VYTA+L+PHDRIMGLDLP
Sbjct: 67 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 126
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HG+M+ +R+S TSI+FESMPY+L+ TGL+DY+ L TA LFRP+LIIAG SA
Sbjct: 127 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 186
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R DY RMR++ D V A L+ DMAHISGLVAA V+ PFK+ D+VTTTTHK+LRG R
Sbjct: 187 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 246
Query: 322 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372
G+IF++K DP G E+ E IN AVFP LQGGPHNH I +AV LK A +P F
Sbjct: 247 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF 306
Query: 373 KVYQNKSAC 381
+ Y +
Sbjct: 307 REYSLQVLK 315
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} Length = 416 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Score = 329 bits (845), Expect = e-111
Identities = 150/301 (49%), Positives = 196/301 (65%), Gaps = 13/301 (4%)
Query: 80 DYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRY 139
+ ++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRY
Sbjct: 4 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 63
Query: 140 YGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLD 199
YGG EY+D +E L RA F NVQP SGS ANF VYTA+L+P D ++G++
Sbjct: 64 YGGCEYVDIVEQLAIDRAKELFGA----DYANVQPHSGSQANFAVYTALLEPGDTVLGMN 119
Query: 200 LPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA 259
L HGGHL+HG V+ + + +PY +D TG +DY LEK A +PK+II G
Sbjct: 120 LAHGGHLTHG-----SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGF 173
Query: 260 SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGP 319
SAY D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GP
Sbjct: 174 SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP 233
Query: 320 RGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379
RGG+I K + +N+AVFPG QGGP H I G AV LK A PEFK YQ +
Sbjct: 234 RGGLILAKGGSEELYK---KLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQV 290
Query: 380 A 380
A
Sbjct: 291 A 291
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 328 bits (842), Expect = e-111
Identities = 144/299 (48%), Positives = 190/299 (63%), Gaps = 15/299 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGA----EHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHGSP-----VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSAC 381
MI ++ I+ A+FPG+QGGP H I AV A +FK Y +
Sbjct: 235 MILCQEQ------FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVD 287
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 121 bits (304), Expect = 3e-31
Identities = 43/317 (13%), Positives = 78/317 (24%), Gaps = 44/317 (13%)
Query: 102 FKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGN-------EYIDELETLC- 153
FKSL+ S G K+ G ++G L L
Sbjct: 4 FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63
Query: 154 --------QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGH 205
+K A +N D+ S AN V +A++ D ++ H
Sbjct: 64 HEGPAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSV 119
Query: 206 LSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK----------LI 255
+ R + D + + A P+ +
Sbjct: 120 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAV 179
Query: 256 IAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA----------DPFKYC 305
I + ++ + + + + D A + ++ P
Sbjct: 180 IQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPG 239
Query: 306 DVVTTTTHKSLRGPRGGMIFFKKD----PVLGVELESAINNAVFPGLQGGPHNHTIGGLA 361
+V + HK G KKD L NN+ + P L
Sbjct: 240 IIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD 299
Query: 362 VCLKHAQSPEFKVYQNK 378
V + + +
Sbjct: 300 VNAAMQEGEAGRKLWHD 316
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 114 bits (286), Expect = 8e-29
Identities = 44/324 (13%), Positives = 91/324 (28%), Gaps = 56/324 (17%)
Query: 92 EIITKEKERQFKSLELIASEN---FTSRAVM------EAVGSCLTNKYSEGLPGKRYYGG 142
E + + + + + N S V G+ + + + G + G
Sbjct: 13 EPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSG 72
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTAILKPHDRIMGLDL 200
+ L ++ +G + G A ++K ++ GLD
Sbjct: 73 SRSYYALA-----ESVKNI------FGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 201 PHGGHLSHGFMTPKR---RVSGTS-----IYFESMPYRLDESTGLVDYDMLEKTAILFRP 252
S+ F + +++G + I + G D + LE+ P
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181
Query: 253 KLII---------AGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAA-------- 295
+ + + M IA ++MD A +
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241
Query: 296 ------SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQ 349
+ + +KY D++ + K P GG++ K D V + +
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVY---TECRTLCVVQE 298
Query: 350 GGPHNHTIGGLAVCLKHAQSPEFK 373
G P + G A+ +
Sbjct: 299 GFPTYGGLEGGAMERLAVGLYDGM 322
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 104 bits (259), Expect = 3e-25
Identities = 37/279 (13%), Positives = 77/279 (27%), Gaps = 43/279 (15%)
Query: 122 VGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPAN 181
+ ++++ + G Y G+ +L+ +A FN D + G A
Sbjct: 53 TNAMSDHQWAAMITGDEAYAGSRNYYDLK----DKAKELFNYDYI-----IPAHQGRGAE 103
Query: 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM------PYRLDEST 235
++ +LK + P H T + D+
Sbjct: 104 NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWK 163
Query: 236 GLVDYDMLEKTA---------ILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDM 286
G D L++ + + + + +IA G ++MD
Sbjct: 164 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 223
Query: 287 AHISGLVA--------------ASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVL 332
A V+ D +KY D +T + K GG++ + + +
Sbjct: 224 ARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEI 283
Query: 333 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPE 371
+ ++G + G + E
Sbjct: 284 FT-----LARQRCVPMEGFVTYGGLAGRDMAAMVQGLEE 317
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 93.3 bits (231), Expect = 2e-21
Identities = 37/277 (13%), Positives = 72/277 (25%), Gaps = 45/277 (16%)
Query: 130 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVN--VQPLSGSPANFEVYTA 187
++ + G Y G+E LE + + +G V G A +
Sbjct: 61 WAGMMIGDEAYAGSENFYHLE-----KTVKEL------FGFKHIVPTHQGRGAENLLSQL 109
Query: 188 ILKPHDRIMG---LDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLE 244
+KP + G +G G +D + L
Sbjct: 110 AIKPGQYVAGNMYFTTTRFHQEKNGA-----TFVDIVRDEAHDASLNLPFKGDIDLNKLA 164
Query: 245 K---------TAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHIS----- 290
A + + + + ++A G + D
Sbjct: 165 TLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYF 224
Query: 291 ---------GLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341
+ +V + F Y D T + K GG + D + + +
Sbjct: 225 IKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCM-NDEEMFSAAKELVV 283
Query: 342 NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNK 378
GG + +A+ L+ A E+ ++ K
Sbjct: 284 VYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVK 320
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 42/227 (18%), Positives = 73/227 (32%), Gaps = 23/227 (10%)
Query: 109 ASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDEN 166
S+ T + + +A+ ++ G YG + I+ELE R A
Sbjct: 5 RSDTVTKPTEEMRKAM--------AQAEVGDDVYGEDPTINELE-----RLAAET---FG 48
Query: 167 KWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226
K P SG+ N A + D ++ H G M V + ++
Sbjct: 49 KEAALFVP-SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN 107
Query: 227 MPYRLDESTGLVDYDMLE--KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMM 284
D+ + + +T+++ + + IA G + +
Sbjct: 108 GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 167
Query: 285 DMAHISGLVAASVV--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKD 329
D A I AS V + Y D V K L P G ++ +D
Sbjct: 168 DGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRD 214
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 39.9 bits (92), Expect = 4e-04
Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 17/209 (8%)
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G + L + L+ + P+S + +A K + + +
Sbjct: 107 GASIMYALTNKILESFFKQLGLNVHAIAT---PISTGMSISLCLSAARKKYGSNVVI--- 160
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEK-----TAILFRPKLII 256
+ SH G ++ + LD V + +E + RP ++
Sbjct: 161 -YPYASHKSPIKAVSFVGMNMRL--VETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS 217
Query: 257 AGASAYPRD-FDYPRMRQIADAVGALLMMDMAHISGLVAAS--VVADPFKYCDVVTTTTH 313
PR+ D + +I + +++ A+ + D V +++
Sbjct: 218 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSD 277
Query: 314 KSLRGPRGGMIFFKKDPVLGVELESAINN 342
K+L P GG + + D E+ +
Sbjct: 278 KNLLTPIGGGLVYSTDAEFIKEISLSYPG 306
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 385 | |||
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 100.0 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 100.0 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 100.0 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.87 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.87 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.85 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.84 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.82 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.82 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.81 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.8 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.8 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.8 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.8 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.79 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.78 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.78 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.77 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.76 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.76 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.75 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.75 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.75 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.75 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.74 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.74 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.74 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.74 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.73 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.73 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.73 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.73 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.72 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.72 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.72 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.71 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.71 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.69 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.69 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.68 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.68 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.68 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.67 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.67 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.67 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.66 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.66 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.64 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.64 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.63 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.63 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.62 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.62 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.62 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.62 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.61 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.61 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.61 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.58 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.57 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.56 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.56 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.55 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.54 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.51 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.49 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.49 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.44 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.44 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.32 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.31 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.11 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.1 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.09 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.06 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 98.93 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 98.84 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 98.72 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 98.7 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.66 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.52 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 98.43 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.32 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 97.9 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 97.29 |
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=3.3e-74 Score=575.30 Aligned_cols=305 Identities=62% Similarity=1.036 Sum_probs=252.1
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
...+|++.|||++++|++|.+||+++|+||||||++|+.|+++++|.|+++|+|||||.|||+|++++|+||.+|.++++
T Consensus 4 ~~~~L~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~ 83 (463)
T d2a7va1 4 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRAL 83 (463)
T ss_dssp SCCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHH
T ss_pred ccCchhhhCHHHHHHHHHHHHHHhcCeeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCC
Q 016668 159 AAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLV 238 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~i 238 (385)
++||+++++|+|+|++.||+.||++++.+|++|||+||.+++.+|||++|++.+....++..|..++.++|+++++++.|
T Consensus 84 ~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~I 163 (463)
T d2a7va1 84 EAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI 163 (463)
T ss_dssp HHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSB
T ss_pred HHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcC
Confidence 99999999999999999999999999999999999999999999999999986655567888999999999999889999
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCcc
Q 016668 239 DYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRG 318 (385)
Q Consensus 239 D~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~G 318 (385)
|+|++++++++++||+|++|.|.|++.+|++++++||+++|++|++|++|.+||+++|.+|+|++++||+++||||||+|
T Consensus 164 Dyd~~~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrG 243 (463)
T d2a7va1 164 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRG 243 (463)
T ss_dssp CHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCS
T ss_pred cHHHHHHHHhhcCCceEEecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeCCCC---------chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 319 PRGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 319 prgG~I~~~~~~~---------~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
||||+|+++++.. ..+++.++|++++||++||+||+|.|||+|+||+|+++++|++|++||++|.
T Consensus 244 PrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NA 317 (463)
T d2a7va1 244 ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNA 317 (463)
T ss_dssp CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 9999999998521 1236899999999999999999999999999999999999999999999984
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=7.8e-74 Score=574.22 Aligned_cols=309 Identities=64% Similarity=1.044 Sum_probs=294.2
Q ss_pred CcchhhhhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHH
Q 016668 75 GSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQ 154 (385)
Q Consensus 75 ~~~~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~ 154 (385)
.+.++++.|++.|||++++|++|.+||+.+|+||||||++|+.|+++++|+|+|+|+|||||.|||+|++++|++|.+|.
T Consensus 4 ~~~~~~~~l~~~D~ei~~~i~~e~~rq~~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~ 83 (470)
T d1rv3a_ 4 HEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQ 83 (470)
T ss_dssp HHHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHH
T ss_pred hHHHHhhhHhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHH
Confidence 36678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC
Q 016668 155 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (385)
++++++||++++.|+++|++.||+.||++++.+|++|||+||.+++.+|||++||+++....++..+..++.++|+++++
T Consensus 84 ~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~ 163 (470)
T d1rv3a_ 84 KRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD 163 (470)
T ss_dssp HHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT
T ss_pred HHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecc
Confidence 99999999998789999999999999999999999999999999999999999998765556777788899999999999
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCc
Q 016668 235 TGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHK 314 (385)
Q Consensus 235 ~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK 314 (385)
++.||+|+++++++.++||+|++|.|.|++.+|++++++||+++|++|++|+||.+||+++|.+|+||+++||+|+||||
T Consensus 164 ~~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHK 243 (470)
T d1rv3a_ 164 TGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHK 243 (470)
T ss_dssp TCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSG
T ss_pred cCcccHHHHHHHHHhhCcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccEEEEEEeCCCC---------chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 315 SLRGPRGGMIFFKKDPV---------LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 315 ~l~GprgG~I~~~~~~~---------~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
||+|||||+|+++++.. ..+++.++|++++||++||+||+|.|||+|+||+|+++++|++|++||++|.
T Consensus 244 tlrGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NA 321 (470)
T d1rv3a_ 244 TLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANC 321 (470)
T ss_dssp GGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred hccCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999998521 2346999999999999999999999999999999999999999999999984
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=9.8e-73 Score=556.29 Aligned_cols=288 Identities=50% Similarity=0.842 Sum_probs=278.7
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~l 160 (385)
+.|++.|||++++|++|+.||+++|+||||||++||.|+++++|.|+|+|+|||||.|||+|++++|++|.+|.++++++
T Consensus 2 ~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~l 81 (405)
T d1kl1a_ 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQL 81 (405)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHcCceEeccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCH
Q 016668 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (385)
Q Consensus 161 fg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~ 240 (385)
||+++ ++|++.||+.||++++.+|++|||+||.+++.+|||++|+. +....|..++.+.|++|++++.||+
T Consensus 82 F~a~~----anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~-----~~~~~g~~~~~~~y~~d~~~~~ID~ 152 (405)
T d1kl1a_ 82 FGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDY 152 (405)
T ss_dssp HCCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECBCTTTCSBCH
T ss_pred hCCCc----ceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCc-----cccccceEEEEEEeccchhcccccH
Confidence 99987 69999999999999999999999999999999999999996 5567788889999999988999999
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCcccc
Q 016668 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR 320 (385)
Q Consensus 241 d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gpr 320 (385)
|+++++++.++||+|++|.|.|++.+|++++++||+++|++|++|+||.+||+++|.+|+|++++|++|+||||||+|||
T Consensus 153 d~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPr 232 (405)
T d1kl1a_ 153 DDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPR 232 (405)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCS
T ss_pred HHHHHHHHhhCcceEEecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 321 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
||+|++++ ++.++|++++||++||+||+|.|||+|+||+|+++++|++|++||++|.
T Consensus 233 gg~I~~~~------~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NA 289 (405)
T d1kl1a_ 233 GGMILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNA 289 (405)
T ss_dssp CEEEEECH------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CceEEecc------hhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 99999987 7999999999999999999999999999999999999999999999985
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-71 Score=548.12 Aligned_cols=290 Identities=53% Similarity=0.828 Sum_probs=277.7
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~l 160 (385)
.+|++.|||++++|++|..||+++|+||||||++|+.|+++++|.|+|+|+|||||.|||+|++++|++|.+|.++++++
T Consensus 5 ~~l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~l 84 (416)
T d1dfoa_ 5 MNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKEL 84 (416)
T ss_dssp CCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCHHHHHHHHHHHHHHHcCceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCH
Q 016668 161 FNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY 240 (385)
Q Consensus 161 fg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~ 240 (385)
||+++ ++|++.||+.||++++.+|++|||+||.+++.+|||++|++ .++..|..++.++|++++ ++.||+
T Consensus 85 F~a~~----anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~-----~~~~~g~~~~~~~y~~d~-~~~IDy 154 (416)
T d1dfoa_ 85 FGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGS-----PVNFSGKLYNIVPYGIDA-TGHIDY 154 (416)
T ss_dssp HTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTC-----TTSHHHHHSEEEEECBCS-SSSBCH
T ss_pred hCCCc----ceeecccCccHHHHHHHHhcCCCCeeeeccccccccccccc-----cccccCceEEEEecccCC-ccCccH
Confidence 99977 69999999999999999999999999999999999999996 567788889999999984 788999
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCcccc
Q 016668 241 DMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPR 320 (385)
Q Consensus 241 d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~Gpr 320 (385)
|++++++++++||+|+++.|.|++.+|++++++||+++|++|++|+||.+||+++|.+|+|++++|++++||||||+|||
T Consensus 155 d~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPr 234 (416)
T d1dfoa_ 155 ADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPR 234 (416)
T ss_dssp HHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCS
T ss_pred HHHHHHHHHhccceEEecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHHHHhccc
Q 016668 321 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKSACKP 383 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~~v~~~~ 383 (385)
||+|+++++. .++.++|++++||++||+||+|.|||+|+||+|+++++|++|++||++|.
T Consensus 235 ggiI~~~~~~---~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA 294 (416)
T d1dfoa_ 235 GGLILAKGGS---EELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNA 294 (416)
T ss_dssp CEEEEESSCC---HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred ceEEEeccch---HhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999998542 17889999999999999999999999999999999999999999999985
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=3.3e-22 Score=192.44 Aligned_cols=195 Identities=12% Similarity=0.113 Sum_probs=135.0
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHH-----HHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYID-----ELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~-----~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
..+.+++++++++.+ |..||+..++..+.. .+ .+.+..++++++++|.+. + +++.+|++||+++
T Consensus 10 ~~~~l~~~a~~a~~~-----~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~A~~~g~e~----~-~~t~g~t~a~~~~ 78 (364)
T d2e7ja1 10 TGGKLTEEARQALLE-----WGDGYSVCDFCTTGR-LDEIKTPPIHDFIHNQLPKFLGCDV----A-RVTNGAREAKFAV 78 (364)
T ss_dssp HTCCCCHHHHHHHHH-----C---------------------CCHHHHHHTHHHHHTTSSE----E-EEESSHHHHHHHH
T ss_pred cCCcCCHHHHHHHHH-----HhcCCchhccccccc-cccccChHHHHHHHHHHHHHhCcCE----E-EEECcHHHHHHHH
Confidence 466788999999874 445665544322211 11 133445678999999976 2 4567788999999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc----CCcEEEEcCC
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF----RPKLIIAGAS 260 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~----~pklIi~~~s 260 (385)
+.++++|||+|++++++|.+.. ..+...|..+..++.. +..++.+|++++++.+++. ++++|++..+
T Consensus 79 ~~al~~~gd~Vi~~~~~h~s~~--------~~~~~~g~~v~~v~~~-~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~ 149 (364)
T d2e7ja1 79 MHSLAKKDAWVVMDENCHYSSY--------VAAERAGLNIALVPKT-DYPDYAITPENFAQTIEETKKRGEVVLALITYP 149 (364)
T ss_dssp HHHHCCTTCEEEEETTCCHHHH--------HHHHHTTCEEEEECCC-CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred HHHHhCCCcEEEeecccccccc--------hHHHhccceEEEeeec-cccccccCHHHHHhhhhhhcccCCceEEEeecC
Confidence 9999999999999987664332 1345678777766642 2235689999999998653 2357766655
Q ss_pred CC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCcccc-EEEEEEeCC
Q 016668 261 AY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPR-GGMIFFKKD 329 (385)
Q Consensus 261 ~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gpr-gG~I~~~~~ 329 (385)
++ |...|+++|.++|+++|+++++|++|+.|.. +..+. ++|++++|+||+|.+|. +|+++.+++
T Consensus 150 ~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~-----~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~ 218 (364)
T d2e7ja1 150 DGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM-----PVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 218 (364)
T ss_dssp CTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTB-----CCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred CCCCceeecchhheeccccccchhhccccchhhhh-----hhcccccccceeeeccccccCCCCCEEEEEECHH
Confidence 44 5778999999999999999999999976643 22222 79999999999997764 588888875
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=3.8e-21 Score=188.01 Aligned_cols=238 Identities=16% Similarity=0.114 Sum_probs=167.8
Q ss_pred hhhhcccCChHHHHHHHHHHH-Hhhhccccc-----cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKE-RQFKSLELI-----ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETL 152 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~-~~~~~l~Li-----asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~ 152 (385)
++++++++.|...-.+.+..+ .+..|.++| .++..+|+.|++++...+.+. ..+|+. ..|.+ +|++.
T Consensus 4 ~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~-~~~Y~~---~~G~~---~lR~~ 76 (382)
T d1b5pa_ 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQG-KTKYAP---PAGIP---ELREA 76 (382)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCC---TTCCH---HHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcC-CcCCCC---CCCCH---HHHHH
Confidence 577888888776655544433 334665555 344567899999998877543 235655 23555 78777
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
+++++.+.+|.+.+ + .+|..++|+ .|+..++.++++|||.|++.+|.|.++.. .+...|..+..++ .
T Consensus 77 ia~~~~~~~~~~~~-~-~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~--------~~~~~g~~~~~v~--~ 144 (382)
T d1b5pa_ 77 LAEKFRRENGLSVT-P-EETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPE--------MVRFAGGVVVEVE--T 144 (382)
T ss_dssp HHHHHHHTTCCCCC-G-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTCEEEEEE--C
T ss_pred HHhhhhhhcccccc-c-ccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHH--------HHHHhcCeEEEEe--c
Confidence 88888888877542 1 245566664 69999999999999999999997765532 3445676544444 3
Q ss_pred cCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-C
Q 016668 232 DES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-Y 304 (385)
Q Consensus 232 ~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-g 304 (385)
+++ +..+|++++++.++. ++++++++.++||+ .+ ++++|.++|+++|++||+|++| ..+.+.+....+.. .
T Consensus 145 ~~~~~~~~d~~~l~~~~~~-~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~ 222 (382)
T d1b5pa_ 145 LPEEGFVPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIY-EHLLYEGEHFSPGRVA 222 (382)
T ss_dssp CGGGTTCCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBSSSCCCCGGGTC
T ss_pred ccccccCCCHHHHHHhCCC-CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccc-cceecCCCCCCHHHcC
Confidence 333 458999999998854 68888888888873 33 4788999999999999999997 56666554444433 2
Q ss_pred Cc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhc
Q 016668 305 CD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 305 aD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~ 343 (385)
.| +++.|++|+| +|+|.||+++++ ++.+.+...
T Consensus 223 ~~~~i~~~s~SK~~~~~GlR~G~~~~~~------~~i~~~~~~ 259 (382)
T d1b5pa_ 223 PEHTLTVNGAAKAFAMTGWRIGYACGPK------EVIKAMASV 259 (382)
T ss_dssp TTTEEEEEESTTTTTCGGGCCEEEECCH------HHHHHHHHH
T ss_pred CCCEEEEecchhhccCcHhheEEEEECH------HHHHHHHHH
Confidence 22 7789999996 689999999987 565555443
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.1e-20 Score=186.43 Aligned_cols=237 Identities=18% Similarity=0.208 Sum_probs=167.8
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~a 187 (385)
++..++|+.|++++...+.+.| ++|++ .+..|.+..+.+|+ +++.+++++|+...+ ..+++.++|+|+..++.+
T Consensus 29 a~~~~~p~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~~~e~-~R~~ia~~l~~~~~~--~i~~~~~~T~~~~~~~~~ 103 (405)
T d1jf9a_ 29 AASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKMEN-VRKRASLFINARSAE--ELVFVRGTTEGINLVANS 103 (405)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHHHH-HHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhcc--CCCccchhHHHHHHHHHHHH-HHHHHHHHcCCCCcc--cccccCcHHHHHHHHHhc
Confidence 5667889999999998887765 35542 23334444455654 799999999976521 234455667788877765
Q ss_pred h----ccCCCEEeecCCCCCccccCCccccccc-cccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC--
Q 016668 188 I----LKPHDRIMGLDLPHGGHLSHGFMTPKRR-VSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS-- 260 (385)
Q Consensus 188 l----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~-~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s-- 260 (385)
+ +++||+|++.+.+|.+... ++.. ....|..+..++ ++ .++.+|++.+++++.+ ++++|++...
T Consensus 104 ~~~~~~~~g~~il~~~~e~~s~~~-----~~~~~a~~~g~~v~~~~--~~-~~g~~~~~~~~~~i~~-~t~lv~~~~v~~ 174 (405)
T d1jf9a_ 104 WGNSNVRAGDNIIISQMEHHANIV-----PWQMLCARVGAELRVIP--LN-PDGTLQLETLPTLFDE-KTRLLAITHVSN 174 (405)
T ss_dssp HHHHHCCTTCEEEEETTCCGGGTH-----HHHHHHHHHTCEEEEEC--BC-TTSCBCGGGHHHHCCT-TEEEEEEESBCT
T ss_pred ccccccCCCCEEEEEeCcccchHH-----HHHHHHHHcCcEEEEEC--CC-CCCcCCHHHHHHhccC-CcEEEEEecCCC
Confidence 2 6899999999988765432 1111 234566666665 55 3678999999998865 7889887643
Q ss_pred CCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 261 ~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
.+|...|+++|.++||++|+++++|++|+.|.+ +..+. ++|++++|+|||+ ||+| |+++.+++ +.
T Consensus 175 ~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~-----~id~~~~~~D~~~~s~hK~~-Gp~G~g~l~v~~~------~~ 242 (405)
T d1jf9a_ 175 VLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-----PVDVQALDCDFYVFSGHKLY-GPTGIGILYVKEA------LL 242 (405)
T ss_dssp TTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEEGGGTT-SCSSCEEEEECHH------HH
T ss_pred cccccCchHHhhhHHHHcCCeeecccceecccc-----ccchhhcCCceeeccccccc-cCCCceeeeechh------hh
Confidence 357899999999999999999999999988754 22222 8999999999996 8987 88888763 33
Q ss_pred HHHhhcc---------------------CCCccCCChHHHHHHHHHHHHHhhCch
Q 016668 338 SAINNAV---------------------FPGLQGGPHNHTIGGLAVCLKHAQSPE 371 (385)
Q Consensus 338 ~~i~~~~---------------------fp~~qg~p~~~~iaala~Al~e~~~~~ 371 (385)
+++.... .-...|+++...++++..|++.....+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g 297 (405)
T d1jf9a_ 243 QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALG 297 (405)
T ss_dssp TTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred cccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhC
Confidence 3221100 001247889999999999998654433
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.9e-20 Score=181.72 Aligned_cols=234 Identities=16% Similarity=0.193 Sum_probs=163.0
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCC-CcHHHHHHHHHHHHHHHHHcCCCCCCCcceeec-CCcHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG-GNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPANFEVYT 186 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~-G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~-~sGs~A~~~a~~ 186 (385)
++..+.++.|++++...+.+....|+|.+..+. |....+.++ .+++.+++++|++++ +|.+ .++|+++..++.
T Consensus 9 aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~-~~R~~iA~~lg~~~~----~I~~~~~~t~~l~~~~~ 83 (391)
T d1p3wa_ 9 SATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVD-IARNQIADLVGADPR----EIVFTSGATESDNLAIK 83 (391)
T ss_dssp TTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHH-HHHHHHHHHHTCCGG----GEEEESSHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHH-HHHHHHHHHcCCCCC----cEEEECCHHHHHHHHHh
Confidence 456788999999999887655555666544332 333333444 578999999999985 3444 455668777776
Q ss_pred Hh----ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-
Q 016668 187 AI----LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA- 261 (385)
Q Consensus 187 al----l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~- 261 (385)
++ +++||+|++.+++|+++... +..+...|..+..++ .+ +++.+|++++++.+++ ++|+|++..++
T Consensus 84 ~~~~~~~~~gd~Vv~~~~~~~s~~~~-----~~~~~~~G~~v~~v~--~~-~~~~~d~~~~~~~i~~-~T~lv~is~~~n 154 (391)
T d1p3wa_ 84 GAANFYQKKGKHIITSKTEHKAVLDT-----CRQLEREGFEVTYLA--PQ-RNGIIDLKELEAAMRD-DTILVSIMHVNN 154 (391)
T ss_dssp HHHHHHGGGCCEEEEETTSCHHHHHH-----HHHHHHTTCEEEEEC--CC-TTSCCCHHHHHHHCCT-TEEEEECCSBCT
T ss_pred hhhhhhcCCCCEEEEeccccchHHHH-----HHHHHHcCCEEEEeC--CC-CCCeEcHHHHHHhCCC-CcEEEEEECCCC
Confidence 54 68999999999887654321 112334576666555 44 4578999999999965 78999887655
Q ss_pred -CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 262 -YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 262 -~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
+|...|+++|.++|+++|+++++|++|+.|.. +-.+. ++|++++|+||++ ||.| |+++.+++..
T Consensus 155 ~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~-----~~d~~~~~~D~~~~s~~k~~-g~~g~g~~~~~~~~~------ 222 (391)
T d1p3wa_ 155 EIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL-----PIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRKPR------ 222 (391)
T ss_dssp TTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTB-----CCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBTTB------
T ss_pred CCeeECCHHHHHHHhccCCcEEEEeeccccCCc-----cccchhcccccccccccccc-CCCceEEEEEecchh------
Confidence 46789999999999999999999999988754 22233 7899999999996 6665 8888877521
Q ss_pred HHHhhc------cCCCccCCChHHHHHHHHHHHHHhh
Q 016668 338 SAINNA------VFPGLQGGPHNHTIGGLAVCLKHAQ 368 (385)
Q Consensus 338 ~~i~~~------~fp~~qg~p~~~~iaala~Al~e~~ 368 (385)
...... ......+.+.....++++.++....
T Consensus 223 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~ 259 (391)
T d1p3wa_ 223 VRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK 259 (391)
T ss_dssp CCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHH
T ss_pred cccCCcccCCccccCcccCcchhhhhhhhhhhhhHHH
Confidence 111100 1112345567777778877776543
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.82 E-value=1.1e-19 Score=178.16 Aligned_cols=238 Identities=14% Similarity=0.130 Sum_probs=161.4
Q ss_pred hhhhcccCChHHHHHHHHHHHHhh-hccccc-----cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQF-KSLELI-----ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETL 152 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~-~~l~Li-----asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~ 152 (385)
++++++.+.|..+-.+.+..++.+ .+.++| .++..+|+.+++++...+.+.. .+|+. ..|.+ ++++.
T Consensus 3 ~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~-~~Y~~---~~G~~---~lR~a 75 (388)
T d1j32a_ 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGK-TRYGP---AAGEP---RLREA 75 (388)
T ss_dssp CCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCC---TTCCH---HHHHH
T ss_pred hhhHhhcCCcCHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCCH---HHHHH
Confidence 356677777775443433333333 555555 3455678999999988775433 34544 23555 67777
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
..+++.+.+|.... + -+|..++|+ +|+..++.++++|||+|++.+|.|.++.. .+...|.....++...
T Consensus 76 ia~~~~~~~g~~~~-~-~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~~~~~v~~~~~~ 145 (388)
T d1j32a_ 76 IAQKLQRDNGLCYG-A-DNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEGTPVILPTTV 145 (388)
T ss_dssp HHHHHHHHHCCCCC-G-GGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTCEEEEECCCG
T ss_pred HHHHHHHhcccCCC-C-ceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHH--------HHHHhcCeEEEEeccc
Confidence 88899898887642 1 256667775 69999999999999999999997765432 2344555444444322
Q ss_pred cCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC---
Q 016668 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--- 303 (385)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--- 303 (385)
+ +++.+|++++++.++. ++|+++++.|+||+ .. ++++|.++|+++|++||+|++| ..+...+..+.++.
T Consensus 146 ~-~~~~~d~~~l~~~~~~-~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y-~~~~~~~~~~~s~~~~~ 222 (388)
T d1j32a_ 146 E-TQFKVSPEQIRQAITP-KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIY-EKILYDDAQHLSIGAAS 222 (388)
T ss_dssp G-GTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCCCGGGSC
T ss_pred c-cccCCCHHHHHHhCCC-CCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhh-hcccccCCCCCCHHHhC
Confidence 2 3457999999998865 67888888888874 34 3778889999999999999997 44444432222221
Q ss_pred -C---CcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 304 -Y---CDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 304 -g---aDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
. -.+++.|++|+| +|.|.||+++++ ++.+.+..
T Consensus 223 ~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~------~~~~~~~~ 261 (388)
T d1j32a_ 223 PEAYERSVVCSGFAKTYAMTGWRVGFLAGPV------PLVKAATK 261 (388)
T ss_dssp HHHHHTEEEEEESTTTTTCTTTCCEEEECCH------HHHHHHHH
T ss_pred cccccceeEecCChhhhhcchhHeEEEEECH------HHHHHHHH
Confidence 1 127899999996 789999999987 56665543
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=3.6e-19 Score=173.52 Aligned_cols=239 Identities=12% Similarity=0.038 Sum_probs=158.8
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhccccccC--CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 016668 80 DYSLGEADPEVCEIITKEKERQFKSLELIAS--ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRA 157 (385)
Q Consensus 80 ~~~l~~~dp~~~~~i~~e~~~~~~~l~Lias--en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~l 157 (385)
+++++.+.+.-...+-+.....++-|+|-.+ +..+|+.|++++.+.+.+.. .+|+. ..|.+ ++++..++++
T Consensus 3 s~~~~~~~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~-~~Y~~---~~G~~---~lr~aia~~~ 75 (388)
T d1gdea_ 3 SDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGL-THYGP---NIGLL---ELREAIAEKL 75 (388)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTC-CSCCC---TTCCH---HHHHHHHHHH
T ss_pred hhhhhhCCccHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCc-cCCCC---CcCCH---HHHHHHHHHH
Confidence 4555555554333333322323345666533 44678999999988876532 35654 23554 7777777788
Q ss_pred HHHcCCCCCCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-C
Q 016668 158 LAAFNLDENKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-T 235 (385)
Q Consensus 158 a~lfg~~~~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~ 235 (385)
.+..+...... .+|.+++| +.++..++.++++|||+|++.+|.|.++.. .+...|..+..++ ++++ +
T Consensus 76 ~~~~~~~~~~~-~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~~~~~--~~~~~~ 144 (388)
T d1gdea_ 76 KKQNGIEADPK-TEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGGKPVEVP--TYEEDE 144 (388)
T ss_dssp HHHHCCCCCTT-TSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTCEEEEEE--CCGGGT
T ss_pred HhhccccCCCh-heeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHcCCEEEEee--cccccC
Confidence 77766533211 24555555 469999999999999999999997765432 3345666554444 4333 4
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CC-Cc
Q 016668 236 GLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KY-CD 306 (385)
Q Consensus 236 ~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~g-aD 306 (385)
+.+|+++|++.+++ ++|+++++.++||+ .. ++++|.++|+++|++||+|++| ..+...+....++ .. .|
T Consensus 145 ~~~d~~~l~~~~~~-~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y-~~~~~~~~~~~~~~~~~~~~~ 222 (388)
T d1gdea_ 145 FRLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVY-EHFIYDDARHYSIASLDGMFE 222 (388)
T ss_dssp TCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBCTTCCCCCGGGSTTCGG
T ss_pred CCCCHHHHHHhCcc-CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCC-hhhhhccCCCCChhhccCCCC
Confidence 58999999998865 78899888888773 33 4788999999999999999997 4454443222121 22 23
Q ss_pred --EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhcc
Q 016668 307 --VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAV 344 (385)
Q Consensus 307 --iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~ 344 (385)
+++.|++|++ +|.|.|++++++ ++.+.+....
T Consensus 223 ~~i~~~S~SK~~~~~GlR~G~ii~~~------~~~~~~~~~~ 258 (388)
T d1gdea_ 223 RTITVNGFSKTFAMTGWRLGFVAAPS------WIIERMVKFQ 258 (388)
T ss_dssp GEEEEEESTTTTTCGGGCCEEEECCH------HHHHHHHHHH
T ss_pred eEEEEeCChhhccCccccEEEEEeec------cchhhhhhcc
Confidence 7889999986 789999999987 5555554443
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.81 E-value=5.4e-19 Score=174.43 Aligned_cols=236 Identities=18% Similarity=0.152 Sum_probs=164.7
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~a 187 (385)
++..++|+.|++++...+.+.+ ++|++ .+..|.+..+.+|+ +++.+++++|++..+ ..+.+.+++.++..+..+
T Consensus 29 a~~~~~p~~v~~~~~~~~~~~~--~n~~s~~~~~~~~~~~~~e~-aR~~ia~llga~~~~--~i~~~~~tt~~~n~~~~~ 103 (408)
T d1t3ia_ 29 AATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYEA-VRNKVAKFINARSPR--EIVYTRNATEAINLVAYS 103 (408)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHHH-HHHHHHHHTTCSCGG--GEEEESSHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHH-HHHHHHHHhCCCCcc--cEEeecchHHHHHHHHhh
Confidence 6677889999999998887765 44543 23445555566665 799999999998532 233344445577776655
Q ss_pred ----hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC--CC
Q 016668 188 ----ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SA 261 (385)
Q Consensus 188 ----ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~--s~ 261 (385)
-+++||+|++.+.+|.+... .+. ......|..+..++ .+ .++..|.+.+++.+.+ ++++|++.. +.
T Consensus 104 ~~~~~~~~g~~il~s~~e~~s~~~-~~~---~~~~~~g~~v~~~~--~~-~~~~~~~~~l~~~~~~-~t~lv~i~~~~~~ 175 (408)
T d1t3ia_ 104 WGMNNLKAGDEIITTVMEHHSNLV-PWQ---MVAAKTGAVLKFVQ--LD-EQESFDLEHFKTLLSE-KTKLVTVVHISNT 175 (408)
T ss_dssp THHHHCCTTCEEEEETTCCGGGTH-HHH---HHHHHHCCEEEEEC--BC-TTSSBCHHHHHHHCCT-TEEEEEEESBCTT
T ss_pred ccccccCCCCEEEeecccchhhhh-hhh---hhhhccCceEeeee--cc-ccccccHHHhhhccCC-CceEEEEeccccc
Confidence 36899999999887765432 110 12234466556655 33 3578899999999865 789888754 34
Q ss_pred CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHH
Q 016668 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELES 338 (385)
Q Consensus 262 ~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~ 338 (385)
+|...|+++|.++|+++|+++++|++|+.|.+ +-.+. ++|++++|+|||+ ||+| |+++.++ ++..
T Consensus 176 tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~-----~id~~~~~~D~~~~s~hK~~-gp~G~g~l~v~~------~~~~ 243 (408)
T d1t3ia_ 176 LGCVNPAEEIAQLAHQAGAKVLVDACQSAPHY-----PLDVQLIDCDWLVASGHKMC-APTGIGFLYGKE------EILE 243 (408)
T ss_dssp TCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECH------HHHH
T ss_pred ccccCcHHHHhhhhhccCceeeeccceecccc-----cccccccCCceEEecccccc-CCCCccccccch------hhhh
Confidence 67889999999999999999999999988864 22233 8999999999984 7887 7888777 4443
Q ss_pred HHhhccC--------------------CCccCCChHHHHHHHHHHHHHhhC
Q 016668 339 AINNAVF--------------------PGLQGGPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 339 ~i~~~~f--------------------p~~qg~p~~~~iaala~Al~e~~~ 369 (385)
....... -...|+++...++++..|++.+..
T Consensus 244 ~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~ 294 (408)
T d1t3ia_ 244 AMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTD 294 (408)
T ss_dssp HSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3211000 012578899999999999975543
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.5e-19 Score=173.20 Aligned_cols=235 Identities=15% Similarity=0.093 Sum_probs=161.4
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+-+.|++..+++.|+++|.... .+.| +.++.+ +-+.++++++++||++.+ + ..+++.|||.|+.++
T Consensus 21 ~l~~pGP~~~~~~Vl~am~~~~--------i~HR---s~~f~~-i~~ea~~~l~~llg~~~~-~-~ii~~gsgT~a~~~~ 86 (388)
T d1h0ca_ 21 LLLGPGPSNLPPRIMAAGGLQM--------IGSM---SKDMYQ-IMDEIKEGIQYVFQTRNP-L-TLVISGSGHCALEAA 86 (388)
T ss_dssp EECSSSCCCCCHHHHHHHTCCC--------CCTT---SHHHHH-HHHHHHHHHHHHHTCCCS-E-EEEESSCHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhCcCC--------CCCC---CHHHHH-HHHHHHHHHHHHhCCCCC-c-EEEEcCcHHHHHHHH
Confidence 5577899999999999986322 1222 334444 545589999999999863 2 334556788899999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC--CCC
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SAY 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~--s~~ 262 (385)
+.+++++||++++... +|.+..+. ......+. ....+..+ ....+|.+++++.+...+++++.+.. +.+
T Consensus 87 i~~l~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~t 157 (388)
T d1h0ca_ 87 LVNVLEPGDSFLVGAN---GIWGQRAV---DIGERIGA--RVHPMTKD-PGGHYTLQEVEEGLAQHKPVLLFLTHGESST 157 (388)
T ss_dssp HHHHCCSSCCEEECBS---SHHHHHHH---HHHHHHC----CBCCBCC-TTCCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred HHHhhccCCceeeecc---cceeeeec---cccccccc--cccccccC-CccccchHHHHHHhccCCcceEEEeeeeecc
Confidence 9999999999998875 33332211 11122222 23333333 34578999998888777899887754 346
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~ 339 (385)
+...|+++|.++|+++|+++++|++|++|.. +..++ ++|++++|.||++.||.| |+++.++ +..+.
T Consensus 158 G~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~-----~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~------~~~~~ 226 (388)
T d1h0ca_ 158 GVLQPLDGFGELCHRYKCLLLVDSVASLGGT-----PLYMDRQGIDILYSGSQKALNAPPGTSLISFSD------KAKKK 226 (388)
T ss_dssp TEECCCTTHHHHHHTTTCEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCTTCEEEEECH------HHHHH
T ss_pred ccccCHHHHHHHhhcccccceeccccccccc-----cccccccccceecccccccccCCCceEEEeecH------HHHHh
Confidence 7788999999999999999999999988754 33344 899999999999999988 4555554 22222
Q ss_pred Hh------------------hc----cCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 340 IN------------------NA----VFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 340 i~------------------~~----~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
+. .. ......++|....+.++..+++.....+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~ 282 (388)
T d1h0ca_ 227 MYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLE 282 (388)
T ss_dssp HTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccc
Confidence 21 11 111234568888999999999877655443
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=2.7e-19 Score=173.27 Aligned_cols=192 Identities=14% Similarity=0.127 Sum_probs=142.4
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccC
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKP 191 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~p 191 (385)
..+++-++++...+...+ +...+.++++|+ +++++||.++ .+.++|||.|+.+++.++ ++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~---------~~~G~~v~~~E~----~la~~~g~~~-----ai~~~sgt~Al~~al~al~~~~ 70 (376)
T d1mdoa_ 9 AMGAEELAAVKTVLDSGW---------ITTGPKNQELEA----AFCRLTGNQY-----AVAVSSATAGMHIALMALGIGE 70 (376)
T ss_dssp CCCHHHHHHHHHHHHHTC---------CSSSHHHHHHHH----HHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHhcCC---------CcCCHHHHHHHH----HHHHHHCcCe-----EEEeCCHHHHHHHHHHHhCCCC
Confidence 345555666666655332 112256677775 6899999987 377899999999999999 999
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHH
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM 271 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I 271 (385)
||+|++++.++.+... .+...|. .++.++++++++.+|+++|++.+++ ++|+|++. +.+|...|+++|
T Consensus 71 gdeVi~~~~~~~~~~~--------ai~~~g~--~pv~~d~~~~~~~~d~~~l~~~i~~-~tkaIi~~-h~~G~~~~~~~i 138 (376)
T d1mdoa_ 71 GDEVITPSMTWVSTLN--------MIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV-HYAGAPADLDAI 138 (376)
T ss_dssp TCEEEEESSSCHHHHH--------HHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB-CGGGCCCCHHHH
T ss_pred CCEEEEeccccccccc--------chhcccc--ceeeecccccccCCCHHHHHHhcCC-CCeEEEEe-CCCCCccchhHH
Confidence 9999999876544322 4456676 4556668878889999999999975 68888763 347788899999
Q ss_pred HHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEEC--CCccCccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 272 RQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTT--THKSLRGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 272 ~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S--~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.++|+++|++||.|+||+.|....+.... ..|+.++| .+|.++++.||+|+++++ ++.+++..
T Consensus 139 ~~i~~~~~i~vIeD~a~a~g~~~~~~~~g---~~g~~~~Sf~~~K~l~~g~GG~i~t~~~-----~l~~~~~~ 203 (376)
T d1mdoa_ 139 YALGERYGIPVIEDAAHATGTSYKGRHIG---ARGTAIFSFHAIKNITCAEGGIVVTDNP-----QFADKLRS 203 (376)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTEETT---SSSEEEEECCTTSSSCSSSCEEEEESCH-----HHHHHHHH
T ss_pred HHHHHhcCceEEeccchhccCeeCCeecc---cccCccccCCCcCCCCCCCCCEEEEech-----hHHHHHHh
Confidence 99999999999999999988655443222 12334445 459998889999999987 66665543
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.8e-18 Score=167.09 Aligned_cols=203 Identities=12% Similarity=0.073 Sum_probs=146.1
Q ss_pred ccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc-HHHHHHHHH
Q 016668 108 IASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG-SPANFEVYT 186 (385)
Q Consensus 108 iasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG-s~A~~~a~~ 186 (385)
-.++-++|+.+++++.+.+.+.. .+|+. ..|. ++++.+++++.+.+|.+.+ + .+|..++| ++|+..++.
T Consensus 7 ~~~df~~p~~i~eal~~~~~~~~-~~Y~~---~~g~----~lr~~ia~~~~~~~g~~~~-~-~~i~it~G~~~~l~~~~~ 76 (361)
T d1d2fa_ 7 SDMDFATAPCIIEALNQRLMHGV-FGYSR---WKND----EFLAAIAHWFSTQHYTAID-S-QTVVYGPSVIYMVSELIR 76 (361)
T ss_dssp SSCSSCCCHHHHHHHHHHHTTCC-CCCCC---SCCH----HHHHHHHHHHHHHSCCCCC-G-GGEEEESCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhCCC-CCCCC---CCCH----HHHHHHHHHHHHHhCCCCC-c-ceEEEeCCHHHHHHHHhh
Confidence 35677788999999998775432 25654 3342 4666777889999998642 2 24555555 469999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR-- 264 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~-- 264 (385)
++++|||+|++++|.|+++.. .+...|..+..+++....+++.+|++++++.+...++|+|++..++||+
T Consensus 77 ~l~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~ 148 (361)
T d1d2fa_ 77 QWSETGEGVVIHTPAYDAFYK--------AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGK 148 (361)
T ss_dssp HSSCTTCEEEEEESCCHHHHH--------HHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCC
T ss_pred hccccccccccccccccchhH--------HHHhhcceEEeecccccccccccccccchhhcccCCceeEEeccccccccc
Confidence 999999999999997765432 2345566555555444434457999999999877678999988888873
Q ss_pred C---CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC---CCc-EEEECCCccC--ccccEEEEEEeCC
Q 016668 265 D---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCD-VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 265 ~---~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~---gaD-iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
. .++++|.++|+++|++||+|++| .++.+.+..+.++. ..+ +++.|++|++ +|+|.|+++....
T Consensus 149 ~~s~~~~~~i~~~~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~ 221 (361)
T d1d2fa_ 149 VWTCDELEIMADLCERHGVRVISDEIH-MDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENS 221 (361)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTT-TTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSH
T ss_pred ccchhhhhhhhhhhhhhheeeeecccc-cccccccccccccccccccccccccccccccccccccceeeecchh
Confidence 2 34889999999999999999997 56665554443332 223 6788999865 7899999887663
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.80 E-value=3.1e-19 Score=173.41 Aligned_cols=238 Identities=17% Similarity=0.155 Sum_probs=158.1
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
++..++|..|++++...+.+....+.- .+.......++.+.+++.+++++|+++++ .+++.+||+|+..++.++
T Consensus 14 ~~~~~~p~~v~ea~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~~~~~~---i~~~~g~t~a~~~~~~~l 87 (381)
T d1elua_ 14 GGQGILPTVALEAITAMYGYLQENGPF---SIAANQHIQQLIAQLRQALAETFNVDPNT---ITITDNVTTGCDIVLWGL 87 (381)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHCSS---SHHHHHHHHHHHHHHHHHHHHHTTSCGGG---EEEESSHHHHHHHHHHHS
T ss_pred CcccCCCHHHHHHHHHHHHHhhcCCCc---cchhhHHHHHHHHHHHHHHHHHhCCCccc---EEEECChHHHhhhcchhh
Confidence 667788999999998877543322211 11222344455556889999999998753 244556678999999998
Q ss_pred -ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCC-HHHHHHHhhhcCCcEEEEcCCC--CCC
Q 016668 189 -LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD-YDMLEKTAILFRPKLIIAGASA--YPR 264 (385)
Q Consensus 189 -l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD-~d~le~~i~~~~pklIi~~~s~--~~~ 264 (385)
+++||+|++.+.+|++... .+. ......|..+..++.+. .....| .+.+++.+.. +++++++...+ +|.
T Consensus 88 ~~~~g~~i~~~~~~~~s~~~-~~~---~~~~~~g~~~~~v~~~~--~~~~~~~~~~l~~~i~~-~t~~v~i~~~~n~tG~ 160 (381)
T d1elua_ 88 DWHQGDEILLTDCEHPGIIA-IVQ---AIAARFGITYRFFPVAA--TLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQ 160 (381)
T ss_dssp CCCTTCEEEEETTCCHHHHH-HHH---HHHHHHCCEEEEECCGG--GSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCC
T ss_pred hhcCCceEEEeccccceeee-ccc---ccccccccccccccccc--ccccchHHHHHHhhhcc-cccccccccccccccc
Confidence 7999999999987754321 110 11233466555555332 222233 4556666644 68888876654 467
Q ss_pred CCCHHHHHHHHHHc----CcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHH
Q 016668 265 DFDYPRMRQIADAV----GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELE 337 (385)
Q Consensus 265 ~~dl~~I~~ia~~~----ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~ 337 (385)
..|+++|.++|+++ |+++++|++|+.|.. +..++ ++|++++|+||++.||.| |+++.+++ ..
T Consensus 161 ~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~-----~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~------~~ 229 (381)
T d1elua_ 161 VLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-----PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD------CL 229 (381)
T ss_dssp BCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTB-----CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT------TG
T ss_pred cchhhHHHHHHhhcccccccccccccccccccc-----cccccccccccccccccccccccchhhHHHhhHH------HH
Confidence 89999999999985 699999999987643 33333 799999999999999987 88888775 22
Q ss_pred HHHhhcc---------------------CCCccCCChHHHHHHHHHHHHHhhCc
Q 016668 338 SAINNAV---------------------FPGLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 338 ~~i~~~~---------------------fp~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
+++.... .....|+++...+.++..|++.....
T Consensus 230 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~ 283 (381)
T d1elua_ 230 GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQ 283 (381)
T ss_dssp GGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHh
Confidence 2221000 01134578888888888888766543
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.79 E-value=2.5e-19 Score=179.12 Aligned_cols=217 Identities=15% Similarity=0.066 Sum_probs=140.6
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
++++++++||++. .+++++||+ +|.+++.++++|||+|++...+|.+....+ ..+.+....+.+.++
T Consensus 71 ae~~~A~~~ga~~-----a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~-------~~l~~~~~~~~~~~~ 138 (462)
T d1c4ka2 71 AEKHAARVYNADK-----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSA-------LAMAGGRPVYLQTNR 138 (462)
T ss_dssp HHHHHHHHTTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH-------TTTTCCEEEEECEEE
T ss_pred HHHHHHHHhCCCe-----EEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHH-------HHHhcCCceeeeccc
Confidence 4567899999987 356778865 778889999999999999988765433211 112233334444344
Q ss_pred cCCC-------CCCCHHHHHHHhhh--------cCCc-EEEEc-CCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccc
Q 016668 232 DEST-------GLVDYDMLEKTAIL--------FRPK-LIIAG-ASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVA 294 (385)
Q Consensus 232 ~~~~-------~~iD~d~le~~i~~--------~~pk-lIi~~-~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~ 294 (385)
++.. ..+|.+.+++.+.. .+++ ++++. ++.+|...|+++|+++|+++|++|++|+||+.|..+
T Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~ 218 (462)
T d1c4ka2 139 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQF 218 (462)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGS
T ss_pred ccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccc
Confidence 4322 13455555443321 1343 44444 445678889999999999999999999999988776
Q ss_pred cCcccCCC----------CCCcEEEECCCccCccccEEEEEEeCC-CC---chhHHHHHHhhccCCCccCCChHHHHHHH
Q 016668 295 ASVVADPF----------KYCDVVTTTTHKSLRGPRGGMIFFKKD-PV---LGVELESAINNAVFPGLQGGPHNHTIGGL 360 (385)
Q Consensus 295 ~g~~~~p~----------~gaDiv~~S~hK~l~GprgG~I~~~~~-~~---~~~~~~~~i~~~~fp~~qg~p~~~~iaal 360 (385)
.+..+... .++|++++|+||+++++.+|.++..++ .+ ..+.-.+.+.+.......++|+...++++
T Consensus 219 ~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl 298 (462)
T d1c4ka2 219 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAAL 298 (462)
T ss_dssp SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred cCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHH
Confidence 54333211 156999999999998887766655444 11 00011233444444445678999999999
Q ss_pred HHHHHHhhCchHHHHHHHHhc
Q 016668 361 AVCLKHAQSPEFKVYQNKSAC 381 (385)
Q Consensus 361 a~Al~e~~~~~~~~y~~~v~~ 381 (385)
.+|...+..+..+++.++.++
T Consensus 299 ~~a~~~~~~~~g~~l~~~~~~ 319 (462)
T d1c4ka2 299 DVNAAMQEGEAGRKLWHDLLI 319 (462)
T ss_dssp HHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 999987765545555554443
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.78 E-value=3.9e-18 Score=168.05 Aligned_cols=240 Identities=18% Similarity=0.165 Sum_probs=170.2
Q ss_pred ccCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHH
Q 016668 108 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (385)
Q Consensus 108 iasen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G~-~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~ 182 (385)
.+|++|+ +|.++++....+. +|.-|..++|...|+ +..+++|+ ++++++|.+. .+.++||..||.
T Consensus 50 FsSndYLGL~~~p~v~~a~~~al~-~yG~gs~~Sr~~~G~~~~h~~LE~----~lA~~~g~e~-----all~~sG~~An~ 119 (396)
T d2bwna1 50 WCGNDYLGMGQHPVVLAAMHEALE-AVGAGSGGTRNISGTTAYHRRLEA----EIAGLHQKEA-----ALVFSSAYNAND 119 (396)
T ss_dssp CSCSCTTSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTBCCBHHHHHHHH----HHHHHTTCSE-----EEEESCHHHHHH
T ss_pred EEcccccCcCCCHHHHHHHHHHHH-HhCCCccccccccCCchHHHHHHH----HHHHHhCCCc-----eeeeecchHHHH
Confidence 4889997 8999999887764 677788888887776 45566665 6899999986 477899999999
Q ss_pred HHHHHh--ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc---CCcEEEE
Q 016668 183 EVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIA 257 (385)
Q Consensus 183 ~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~---~pklIi~ 257 (385)
.++.++ .++||.|+.....|.+. . ..+.+.+..+. .|+ +.|+++++++++.. ++++|++
T Consensus 120 ~~i~~l~~~~~~d~i~~D~~~Hasi------~--~g~~ls~a~~~--~f~------Hnd~~~l~~l~~~~~~~~~~~iv~ 183 (396)
T d2bwna1 120 ATLSTLRVLFPGLIIYSDSLNHASM------I--EGIKRNAGPKR--IFR------HNDVAHLRELIAADDPAAPKLIAF 183 (396)
T ss_dssp HHHHHHHHHSTTCEEEEETTCCHHH------H--HHHHHSCCCEE--EEC------TTCHHHHHHHHHHSCTTSCEEEEE
T ss_pred HHHHHHhcccCCCceeehhhhhhcc------c--hhhhccccCce--Eee------cchHHHhhhHHhhhcccCceeEEE
Confidence 999988 57899888776544221 1 13345555433 333 34777777776532 3456776
Q ss_pred cC--CCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCc---c--cCCCCCCcEEEECCCccCccccEEEEEEeCCC
Q 016668 258 GA--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV---V--ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDP 330 (385)
Q Consensus 258 ~~--s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~---~--~~p~~gaDiv~~S~hK~l~GprgG~I~~~~~~ 330 (385)
+. |..|...|+++|.++|++||++|++|+||+.|...... . .......|++++|+.|.| |-.||+|++++
T Consensus 184 egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~-g~~Gg~v~~~~-- 260 (396)
T d2bwna1 184 ESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY-GVFGGYIAASA-- 260 (396)
T ss_dssp ESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTT-CSCCEEEEECH--
T ss_pred EeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccc-cccccccchhH--
Confidence 53 34567789999999999999999999999999875321 1 111125689999999997 56789999988
Q ss_pred CchhHHHHHHhhccCCCccC-CChHHHHHHHHHHHHHhhCchHHHHHHHHh
Q 016668 331 VLGVELESAINNAVFPGLQG-GPHNHTIGGLAVCLKHAQSPEFKVYQNKSA 380 (385)
Q Consensus 331 ~~~~~~~~~i~~~~fp~~qg-~p~~~~iaala~Al~e~~~~~~~~y~~~v~ 380 (385)
++.+.+.....+.+.+ ++.+..+++...+++.+..++.++.+++..
T Consensus 261 ----~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~ 307 (396)
T d2bwna1 261 ----RMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQ 307 (396)
T ss_dssp ----HHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred ----HHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 6777776544343333 445667777777787777666665555443
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=2.5e-18 Score=166.93 Aligned_cols=235 Identities=16% Similarity=0.132 Sum_probs=160.4
Q ss_pred cccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC-CCCCcceeecCCcHHHHHHHH
Q 016668 107 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLD-ENKWGVNVQPLSGSPANFEVY 185 (385)
Q Consensus 107 Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~-~~~~~~~V~~~sGs~A~~~a~ 185 (385)
+.|.+..+++.|++||.... .+.| +.++.+ +-+.+++.++++++.. .+++.+.+++.|||.|+.+++
T Consensus 7 ~~PGP~~v~~~V~~Am~~~~--------~~hr---~~~f~~-~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~ 74 (382)
T d2bkwa1 7 LIPGPIILSGAVQKALDVPS--------LGHT---SPEFVS-IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFA 74 (382)
T ss_dssp CSSSSCCCCHHHHHTTSCCC--------CCTT---SHHHHH-HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHH
T ss_pred cCCCCCCCCHHHHHHhCccc--------CCCC---cHHHHH-HHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHH
Confidence 56888899999999975321 1211 234433 4444778888999862 222335566778899999999
Q ss_pred HHhc---cCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC--C
Q 016668 186 TAIL---KPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--S 260 (385)
Q Consensus 186 ~all---~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~--s 260 (385)
.+++ +|||+|++... ++.++.+. ......+..+..+. ..+....++.+.+++.+...+++++++.. +
T Consensus 75 ~~l~~~~~~gd~vlv~~~---~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (382)
T d2bkwa1 75 SNFILSKAPNKNVLVVST---GTFSDRFA---DCLRSYGAQVDVVR--PLKIGESVPLELITEKLSQNSYGAVTVTHVDT 146 (382)
T ss_dssp HHHSCTTCSCCEEEEECS---SHHHHHHH---HHHHHTTCEEEEEC--CSSTTSCCCHHHHHHHHHHSCCSEEEEESEET
T ss_pred HHHHHhcCCCCceEEEEe---chhhhhhh---hhcccccccccccc--ccCCCCccchhHHHHHhhhccchheeeeeccc
Confidence 9986 68999999764 33332211 12234454444333 22234468899999888777888887643 4
Q ss_pred CCCCCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhH
Q 016668 261 AYPRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVE 335 (385)
Q Consensus 261 ~~~~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~ 335 (385)
.++...|++++.++|+++ ++++++|++|++|.. |-.++ ++|++++|.||+|.||.| |+++.+++
T Consensus 147 ~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~-----pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~------ 215 (382)
T d2bkwa1 147 STAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE-----EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSR------ 215 (382)
T ss_dssp TTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHH------
T ss_pred cccccccchhhhhhccccccceeeeeecccccccc-----cccccccCeeEEeecccccCcCCCchhhhhccHH------
Confidence 467788999999998876 599999999988753 33444 899999999999999998 78888764
Q ss_pred HHHHH-----------------------hhc--cCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 336 LESAI-----------------------NNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 336 ~~~~i-----------------------~~~--~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
+.+++ ... ......++|+.+.++++..||+++.+++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~ 277 (382)
T d2bkwa1 216 FMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGL 277 (382)
T ss_dssp HHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhh
Confidence 22221 110 11123457999999999999998876554
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.77 E-value=1.1e-18 Score=175.26 Aligned_cols=218 Identities=17% Similarity=0.165 Sum_probs=151.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcccccc
Q 016668 136 GKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKR 215 (385)
Q Consensus 136 ~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~ 215 (385)
|...|+|++.+.+||+ +++++||.++ .+.++||+.||..++.++++|||+|+....-+. +..|
T Consensus 67 GDd~Y~~dpt~~~lE~----~~a~l~G~e~-----al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~~-~~~~------- 129 (456)
T d1c7ga_ 67 GDEAYAGSENFYHLEK----TVKELFGFKH-----IVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTT-TRFH------- 129 (456)
T ss_dssp CCCCSSSCHHHHHHHH----HHHHHHCCSE-----EEEESSHHHHHHHHHHHHCCTTEEEEESSCCHH-HHHH-------
T ss_pred cchhccCCchHHHHHH----HHHHHhCCCe-----EEECCCHHHHHHHHHHHhcCCCCeEecCcchHH-HHHH-------
Confidence 4446889999999987 5788999998 377899999999999999999999997543111 0011
Q ss_pred ccccCcceEEEEec-------cccCCCCCCCHHHHHHHhhhcCC---cEEEEcCCCC---CCCC---CHHHHHHHHHHcC
Q 016668 216 RVSGTSIYFESMPY-------RLDESTGLVDYDMLEKTAILFRP---KLIIAGASAY---PRDF---DYPRMRQIADAVG 279 (385)
Q Consensus 216 ~~~~~g~~~~~i~~-------~~~~~~~~iD~d~le~~i~~~~p---klIi~~~s~~---~~~~---dl~~I~~ia~~~g 279 (385)
+...|.....+.. ..++.++.+|+++|++.+++..+ .++++..+++ +... ++++|.++|+++|
T Consensus 130 -i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~ 208 (456)
T d1c7ga_ 130 -QEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYG 208 (456)
T ss_dssp -HHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred -HHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcC
Confidence 1122322111111 11234578999999999976432 3666665543 2333 5788899999999
Q ss_pred cEEEEeccccccccc-c-----Cccc--------CCCCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhc--
Q 016668 280 ALLMMDMAHISGLVA-A-----SVVA--------DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNA-- 343 (385)
Q Consensus 280 a~livD~ah~~Gli~-~-----g~~~--------~p~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~-- 343 (385)
+.++.|++|..|... . +... ..+..+|++++|+||.+.++.||+++++++ ++.+++...
T Consensus 209 ~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~-----~l~~~~r~~~~ 283 (456)
T d1c7ga_ 209 IKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE-----EMFSAAKELVV 283 (456)
T ss_dssp CCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCH-----HHHHHHHHHHH
T ss_pred CEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCH-----HHHHHHHHhcc
Confidence 999999999765321 0 0000 112368999999999999999999999886 666655432
Q ss_pred --cCCCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 344 --VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 344 --~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
.....+++.....+.++++.+.+....++.+|+
T Consensus 284 ~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r 318 (456)
T d1c7ga_ 284 VYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHR 318 (456)
T ss_dssp HHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHH
Confidence 233446778888999999999998887765444
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=3.8e-18 Score=165.42 Aligned_cols=200 Identities=18% Similarity=0.216 Sum_probs=145.8
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHH-
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTA- 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~a- 187 (385)
++..++++.|++++...+.+.+ ++|++.+..+....+.+++ +++++++++|+++++ .++..++|+++..++.+
T Consensus 8 a~~~~~p~~v~ea~~~~~~~~~--~np~~~~~~~~~~~~~~~~-aR~~ia~l~~~~~~~---i~~~~~~T~~l~~~~~~~ 81 (376)
T d1eg5a_ 8 NATTRVDDRVLEEMIVFYREKY--GNPNSAHGMGIEANLHMEK-AREKVAKVLGVSPSE---IFFTSCATESINWILKTV 81 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHTCC--CCTTCSSHHHHHHHHHHHH-HHHHHHHHHTSCGGG---EEEESCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHcC--CCCccccHHHHHHHHHHHH-HHHHHHHHcCCCCCc---EEEECCHHHHHHhhhhcc
Confidence 6678889999999999988765 5777655555554555554 799999999999752 23344556787777653
Q ss_pred ---hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC--C
Q 016668 188 ---ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA--Y 262 (385)
Q Consensus 188 ---ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~--~ 262 (385)
.+++||.|++....++.+.. .++.+...|..+..+| ++ +++.+|++++++.+++ ++++|++...+ +
T Consensus 82 ~~~~~~~g~~v~~~~~~~~~~~~-----~~~~~~~~g~~v~~vp--~~-~~~~id~~~l~~~i~~-~t~lv~is~v~~~t 152 (376)
T d1eg5a_ 82 AETFEKRKRTIITTPIEHKAVLE-----TMKYLSMKGFKVKYVP--VD-SRGVVKLEELEKLVDE-DTFLVSIMAANNEV 152 (376)
T ss_dssp HHHTTTTCCEEEECTTSCHHHHH-----HHHHHHHTTCEEEECC--BC-TTSCBCHHHHHHHCCT-TEEEEEEESBCTTT
T ss_pred cccccccCcccccccccchhhHH-----HHHHHHhcCCEEEEEc--CC-CCCeECHHHHHHhcCC-CceEEEEECCcccc
Confidence 36788898888765543321 1123445576555555 55 4689999999999975 78999887654 4
Q ss_pred CCCCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCC
Q 016668 263 PRDFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~ 329 (385)
+...|++++.++++.+ |+++++|++|+.|.+ +..+. ++|++++|+|||+ ||+| |+++.+++
T Consensus 153 G~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~-----~~d~~~~~~D~~~~s~~K~~-gp~G~~~l~~~~~ 218 (376)
T d1eg5a_ 153 GTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI-----PFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKG 218 (376)
T ss_dssp CBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-----CCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTT
T ss_pred ceeeeehhhhhhhhhcccCceeEEEeeeccccc-----cccccccCccceecccceee-cCCCceeEEeccC
Confidence 5678999999998655 999999999988765 22333 7899999999995 7887 77777664
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=7.5e-19 Score=176.12 Aligned_cols=230 Identities=17% Similarity=0.189 Sum_probs=157.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
...+.+.|+|++.+++||+ +++++||.++ .+++.||+.||..++.+++++||.+++.+..+..+.+|.+..
T Consensus 63 ~~~gd~~Y~~~~~~~~le~----~~a~l~G~~~-----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~ 133 (467)
T d2v1pa1 63 MMRGDEAFSGSRSYYALAE----SVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133 (467)
T ss_dssp TTSCCCCSSSCHHHHHHHH----HHHHHTCCSE-----EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCH
T ss_pred ccccchhhcCCchHHHHHH----HHHHHHCCCE-----EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccc
Confidence 3456667889999998886 5789999987 377899999999999999999999999888777777766543
Q ss_pred cc-cccccCcceEEEEeccc-------cCCCCCCCHHHHHHHhhhcC---CcEEEEcCCCC---CCC---CCHHHHHHHH
Q 016668 213 PK-RRVSGTSIYFESMPYRL-------DESTGLVDYDMLEKTAILFR---PKLIIAGASAY---PRD---FDYPRMRQIA 275 (385)
Q Consensus 213 ~~-~~~~~~g~~~~~i~~~~-------~~~~~~iD~d~le~~i~~~~---pklIi~~~s~~---~~~---~dl~~I~~ia 275 (385)
.. ..+...|..+..++.+. ...++.+|++++++.++..+ +++|++...++ +.. .++++|++||
T Consensus 134 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia 213 (467)
T d2v1pa1 134 TTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIA 213 (467)
T ss_dssp HHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHH
T ss_pred ccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHH
Confidence 32 23455666554443221 12246799999999987543 34566544322 222 3688999999
Q ss_pred HHcCcEEEEeccccccccccCc------cc--------CCCCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 276 DAVGALLMMDMAHISGLVAASV------VA--------DPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 276 ~~~ga~livD~ah~~Gli~~g~------~~--------~p~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
++||++|++|++|..|....+. .. ..+..+|++++|+||.+.+|.||+++++++.+. .......
T Consensus 214 ~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~--~~~~~~~ 291 (467)
T d2v1pa1 214 KKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFF--DVYTECR 291 (467)
T ss_dssp HHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGH--HHHHHHH
T ss_pred HHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhh--hHHHhhc
Confidence 9999999999999766432211 00 112257999999999999999999999886320 1111111
Q ss_pred ----hccCCCccCCChHHHHHHHHHHHHHhhCchHH
Q 016668 342 ----NAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373 (385)
Q Consensus 342 ----~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~ 373 (385)
........++.....+++++..+.+...+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 327 (467)
T d2v1pa1 292 TLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWL 327 (467)
T ss_dssp HHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHH
Confidence 11112234456667777778788777766553
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.75 E-value=3.1e-18 Score=168.09 Aligned_cols=229 Identities=16% Similarity=0.076 Sum_probs=151.4
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccc---cC-----CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELI---AS-----ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETL 152 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Li---as-----en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~ 152 (385)
+++..+.-.+.+++...++-+..|.++| .+ +-.+|+.+++++...+.+. ..+|+. ..|.+ +|++.
T Consensus 6 ~r~~~~~~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~-~~~Y~~---~~G~~---~LR~a 78 (395)
T d1xi9a_ 6 KRALSVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEG-HNYYGD---SEGLP---ELRKA 78 (395)
T ss_dssp HHHHTCCC-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTT-CCSCCC---TTCCH---HHHHH
T ss_pred hccccCcHHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC---CCCCH---HHHHH
Confidence 4444444444444433222223454444 22 3457899999998877542 235655 34655 78888
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
+++++.+.+|.+.+. .+|.+++|+ .++..++.+++++||+|++.+|.|..+.. .+...|..+..+++..
T Consensus 79 ia~~~~~~~g~~~~~--~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~--------~~~~~g~~~v~v~~~~ 148 (395)
T d1xi9a_ 79 IVEREKRKNGVDITP--DDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTG--------LVKFYGGKPVEYRTIE 148 (395)
T ss_dssp HHHHHHHHHCCCCCG--GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHTTCEEEEEEEEG
T ss_pred HHHhhhhcccccccc--cccccccccchhhhhhhhhhcCCCCEEEEcCCccccchh--------hhhhcCCEEEEEeccc
Confidence 888999999987532 256666655 59999999999999999999997755432 3456676554444322
Q ss_pred cCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC---
Q 016668 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--- 303 (385)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--- 303 (385)
.+++.+|++++++.+.+ ++|+|+++.|+||+ .. .+++|.++|+++|++++.|+++ ..+.+.+....+..
T Consensus 149 -~~~~~~d~~~~~~~~~~-~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~ 225 (395)
T d1xi9a_ 149 -EEDWQPDIDDIRKKITD-RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIY-DLMTYEGEHISPGSLTK 225 (395)
T ss_dssp -GGTSEECHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTT-TTCBSSSCCCCHHHHCS
T ss_pred -cccccchHHHHHHhhcc-cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccc-ccccccccccchhhcCC
Confidence 23568999999998864 78898888888874 33 3688999999999999999986 44555443333322
Q ss_pred CCc-EEEECCCccC--ccccEEEEEEeCC
Q 016668 304 YCD-VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 304 gaD-iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
... +++.|++|++ +|+|.|++++...
T Consensus 226 ~~~vi~~~S~SK~~~~~GlRvG~~~~~~~ 254 (395)
T d1xi9a_ 226 DVPVIVMNGLSKVYFATGWRLGYMYFVDP 254 (395)
T ss_dssp SSCEEEEEESTTTTCCGGGCCEEEEEECT
T ss_pred CCCEEEEeCcchhcccchhhcEeeEecCH
Confidence 223 6789999986 6999999876543
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=7.6e-18 Score=166.26 Aligned_cols=229 Identities=21% Similarity=0.236 Sum_probs=157.0
Q ss_pred cCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHH
Q 016668 109 ASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFE 183 (385)
Q Consensus 109 asen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G~-~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~ 183 (385)
+|++|+ +|.|+++....+ ++|..++.++|...|+ +...++|+ .+++++|.+. .+.++||+.||..
T Consensus 51 ~s~dYLGl~~hp~v~~a~~~a~-~~~g~~~~~sr~~~g~~~~~~~lE~----~lA~~~g~e~-----al~~~SG~~An~~ 120 (401)
T d1fc4a_ 51 CANNYLGLANHPDLIAAAKAGM-DSHGFGMASVRFICGTQDSHKELEQ----KLAAFLGMED-----AILYSSCFDANGG 120 (401)
T ss_dssp CCSCTTSCTTCHHHHHHHHHHH-HHHCSCCCSCHHHHCCBHHHHHHHH----HHHHHHTCSE-----EEEESCHHHHHHT
T ss_pred EccccccccCCHHHHHHHHHHH-HHhCCCcccceeeccCcHHHHHHHH----HHHHhhcCCc-----eEEecchhhhhHH
Confidence 677774 799999988776 5666677777766665 34445554 6889999986 4678999999999
Q ss_pred HHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEEEEc
Q 016668 184 VYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLIIAG 258 (385)
Q Consensus 184 a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklIi~~ 258 (385)
++.++.+++|.|+.....|.++. ..+...+..+. .++ ..|+++++++++.. +..+|+++
T Consensus 121 ~i~~l~~~~d~i~~d~~~h~s~~--------~G~~~~~a~~~--~~~------~~d~~~le~~~~~~~~~~~~~~liv~e 184 (401)
T d1fc4a_ 121 LFETLLGAEDAIISDALNHASII--------DGVRLCKAKRY--RYA------NNDMQELEARLKEAREAGARHVLIATD 184 (401)
T ss_dssp THHHHCCTTCEEEEETTCCHHHH--------HHHHTSCSEEE--EEC------TTCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred HHHHhcCCCcEEEeCCcchHHHH--------ccccccCceEE--EEc------CCChHHHHHHHHHhhhcccCceEEEEc
Confidence 99999999999998776554332 12334444333 222 35777777665321 22466665
Q ss_pred C--CCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccC---c--ccCCCCCCcEEEECCCccCccccEEEEEEeCCCC
Q 016668 259 A--SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS---V--VADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPV 331 (385)
Q Consensus 259 ~--s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g---~--~~~p~~gaDiv~~S~hK~l~GprgG~I~~~~~~~ 331 (385)
. +..+...|+++|+++|+++|++|++|++|+.|..... . .....+..|++++|++|.|.|+.||++++++
T Consensus 185 gv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~--- 261 (401)
T d1fc4a_ 185 GVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARK--- 261 (401)
T ss_dssp SEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECH---
T ss_pred CCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCH---
Confidence 3 3345567899999999999999999999998876531 1 1122236799999999999999999999988
Q ss_pred chhHHHHHHhhccCCCccC-CChHHHHHHHHHHHHHhhC
Q 016668 332 LGVELESAINNAVFPGLQG-GPHNHTIGGLAVCLKHAQS 369 (385)
Q Consensus 332 ~~~~~~~~i~~~~fp~~qg-~p~~~~iaala~Al~e~~~ 369 (385)
++.+.+.....+.+.+ ++.+...++...+++.+..
T Consensus 262 ---~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~ 297 (401)
T d1fc4a_ 262 ---EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA 297 (401)
T ss_dssp ---HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccccc
Confidence 6777765443222222 3444555555566665543
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=3.8e-18 Score=163.81 Aligned_cols=239 Identities=15% Similarity=0.024 Sum_probs=149.1
Q ss_pred ccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHH
Q 016668 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (385)
Q Consensus 106 ~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~ 185 (385)
-+.|.+..+++.|++++.....++ .+.... ++.+.+++++++++|+++++. +.+++.|||.++..++
T Consensus 3 l~~pGP~~~~~~V~~A~~~~~~~~-----------~~~~~~-~~~~~~r~~l~~l~~~~~~~~-~i~~t~s~T~~~~~~~ 69 (361)
T d1m32a_ 3 LLTPGPLTTSRTVKEAMLFDSCTW-----------DDDYNI-GVVEQIRQQLTALATASEGYT-SVLLQGSGSYAVEAVL 69 (361)
T ss_dssp ECSSSSCCCCHHHHHTTCCCCCTT-----------SHHHHT-TTHHHHHHHHHHHHCSSSSEE-EEEEESCHHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHhhhhccCC-----------CcHHHH-HHHHHHHHHHHHHhCCCCCCE-EEEECCCHHHHHHHHH
Confidence 356888889999999875332111 122222 334458899999999987431 3345567889999999
Q ss_pred HHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCH--HHHHHHhhhcCCcEEEEcC--CC
Q 016668 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDY--DMLEKTAILFRPKLIIAGA--SA 261 (385)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~--d~le~~i~~~~pklIi~~~--s~ 261 (385)
.++..++|++++....+.+...+ ......+....... .. .....+. +...... ..+++++.+.. +.
T Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~ 139 (361)
T d1m32a_ 70 GSALGPQDKVLIVSNGAYGARMV------EMAGLMGIAHHAYD--CG-EVARPDVQAIDAILNA-DPTISHIAMVHSETT 139 (361)
T ss_dssp HHSCCTTCCEEEEESSHHHHHHH------HHHHHHTCCEEEEE--CC-TTSCCCHHHHHHHHHH-CTTCCEEEEESEETT
T ss_pred HHhhhhccccceeeehhhhhhHH------HHhhhhhccccccc--cc-ccCCccchhhHHHHHh-ccCccceEEEeeecc
Confidence 99999998888776432211111 01112222223322 11 1223333 3333333 23678876654 34
Q ss_pred CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCC-------
Q 016668 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPV------- 331 (385)
Q Consensus 262 ~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~------- 331 (385)
++...|+++|.++|+++|+++++|++|++|.. +-.++ ++|++++|.||++.||.| |+++.+++..
T Consensus 140 tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~-----~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~ 214 (361)
T d1m32a_ 140 TGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI-----PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHS 214 (361)
T ss_dssp TTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCC
T ss_pred cccchhhhhhhhhhcccceeeEeecccccCcc-----cccccccccceEEeeecccccCCCCceEEEechhhhhhhcccc
Confidence 67889999999999999999999999988854 22333 899999999999999988 7787776410
Q ss_pred ----chhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 332 ----LGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 332 ----~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
..................+++....+.++..++.+...+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~ 259 (361)
T d1m32a_ 215 RSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGG 259 (361)
T ss_dssp SCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTH
T ss_pred ccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcc
Confidence 00011111111112223456788888888888887765544
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.75 E-value=2.7e-17 Score=162.24 Aligned_cols=257 Identities=12% Similarity=0.052 Sum_probs=172.6
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhccccc--cCCCCCcHHHHHHHhhHhhccC--CCCCCCCCCCCCcHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELI--ASENFTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQ 154 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Li--asen~~s~~V~~al~s~l~~~y--~~g~p~~r~~~G~~~~~~le~~~~ 154 (385)
+.++++.+++.++..+.+... +.+-|+|- .++..+|+.+++++...+.+.. ..+|+. ..|.+ ++++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~---~~G~~---~lReaiA 76 (418)
T d2r5ea1 4 LPKRYQGSTKSVWVEYIQLAA-QYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTR---GFGHP---RLVQALS 76 (418)
T ss_dssp CCGGGTTCCCCHHHHHHHHHH-HHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCC---TTCCH---HHHHHHH
T ss_pred hhhhhcCCCCCHHHHHHHHhc-CCCCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCC---CCCCH---HHHHHHH
Confidence 568899999999977765433 33446665 3444568899999987765331 234554 33655 7888888
Q ss_pred HHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC
Q 016668 155 KRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (385)
+++.+.+|.+.. +..+|..++|+ +|+..++.++++|||.|++++|.|.++.. .+...|.....+++..+.
T Consensus 77 ~~~~~~~g~~~~-p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~--------~~~~~g~~~~~v~~~~~~ 147 (418)
T d2r5ea1 77 KLYSQLVDRTIN-PMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP--------MVKAAGGIPRFIPLKPNK 147 (418)
T ss_dssp HHHHHHHTSCCC-TTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEESC
T ss_pred HHHHHHhCCCCC-ccceEEEcCCCchhhhhhhhhccccccceeccccccchhhH--------HHHHcCCeEEEEEecccc
Confidence 899999998742 11246677776 59999999999999999999987655422 334566655555543321
Q ss_pred C-------CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcc-cC
Q 016668 234 S-------TGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVV-AD 300 (385)
Q Consensus 234 ~-------~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~ 300 (385)
. ...+|.+++++.... ++++++++.++||+ ..+ +++|+++|+++|+++|.|+++ ..+...+.. ++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y-~~~~~~~~~~~s 225 (418)
T d2r5ea1 148 TGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVY-EHMVFEPFEHIR 225 (418)
T ss_dssp CSSCEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCCC
T ss_pred cccchhhhhhhhhHHHHhhhhhc-cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccch-hhhccCCCcccc
Confidence 1 135788888887643 78899888888873 333 677889999999999999997 444444322 22
Q ss_pred C--CCCC-c--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHH
Q 016668 301 P--FKYC-D--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGG 359 (385)
Q Consensus 301 p--~~ga-D--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaa 359 (385)
. +... + +++.|++|++ +|+|.|++++++ ++.+.+.........+.+...+.++
T Consensus 226 ~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~------~~i~~~~~~~~~~~~~~~~~~q~a~ 285 (418)
T d2r5ea1 226 ICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE------ALLKNLQMVHQNCVYTCATPIQEAI 285 (418)
T ss_dssp GGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCH------HHHHHHHHHHTTTTCSCCHHHHHHH
T ss_pred ccccccccceeeeeecCCccccCCCcccccccccc------hhhhhhhhcccccccccccchhhhc
Confidence 1 1121 2 6788999996 889999999987 5766665544333344444444433
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.74 E-value=7.1e-18 Score=164.13 Aligned_cols=185 Identities=21% Similarity=0.134 Sum_probs=123.4
Q ss_pred HHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccC
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE 233 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (385)
++...+.|+.+..+ ..+.+.+|++|+++++.+|.++||.|++++ ..+|.++. ..+...|.+ ++. .+
T Consensus 56 ~~~~~~~~~~~~~e--~~~~~~~~~~a~~~~l~al~~~~~vi~~~~--~~~~~~~~-----~~~~l~g~~--~v~--~~- 121 (366)
T d2aeua1 56 NEYGLKHLGGDEND--KCVGFNRTSSAILATILALKPKKVIHYLPE--LPGHPSIE-----RSCKIVNAK--YFE--SD- 121 (366)
T ss_dssp HHHHHHHHTCCTTE--EEEEESSHHHHHHHHHHHHCCSEEEEECSS--SSCCTHHH-----HHHHHTTCE--EEE--ES-
T ss_pred HHHHHHHccCCCcc--EEEEeCCHHHHHHHHHHHhCCCCEEEEecC--CCcchhHH-----HHHHhcCCe--EEC--CC-
Confidence 34456677776542 235556777899999998764444444433 12333321 244566764 222 22
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCC---CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEE
Q 016668 234 STGLVDYDMLEKTAILFRPKLIIAGASAYPRD---FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVT 309 (385)
Q Consensus 234 ~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~---~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~ 309 (385)
|++++++.+++ ++|+|+++.++|+.. .|+++|+++|+++|+++++|++|..++......+.+.+ ++|+++
T Consensus 122 -----d~e~l~~~i~~-~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~ 195 (366)
T d2aeua1 122 -----KVGEILNKIDK-DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVV 195 (366)
T ss_dssp -----CHHHHHTTCCT-TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEE
T ss_pred -----CHHHHHHhcCC-CceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEE
Confidence 89999999865 789999988777644 36899999999999999999999766543333334444 899999
Q ss_pred ECCCccCccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 310 TTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 310 ~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
+|+||+++||++|++++++ ++.+++......... ++......++..+|+
T Consensus 196 ~S~sK~~~g~~~G~i~~~~------~~i~~~~~~~~~~g~-~~~~~~~~a~~~aL~ 244 (366)
T d2aeua1 196 TSTDKLMEGPRGGLLAGKK------ELVDKIYIEGTKFGL-EAQPPLLAGIYRALK 244 (366)
T ss_dssp EETTSSSSSCSCEEEEEEH------HHHHHHHHHHHTTTC-BCCHHHHHHHHHHHH
T ss_pred ecccccccccceeEEEecH------HHHHHHHHHHhcccc-cCCHHHHHHHHHHHH
Confidence 9999999999999999998 677777554332222 223333444444554
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.74 E-value=1.8e-17 Score=162.21 Aligned_cols=210 Identities=16% Similarity=0.169 Sum_probs=145.4
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHH
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTA 187 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~a 187 (385)
.++-++|+.|++++...+.+. ..||+. |.+ +|++.+++++.+.+|.+.+. -+|..++|+ +|+..++.+
T Consensus 40 ~pdf~~p~~v~~al~~~~~~~-~~~Y~~-----g~~---~Lr~aia~~~~~~~g~~~~~--~~I~vt~G~~~al~~~~~~ 108 (394)
T d1c7na_ 40 DMEFKNPPELIEGLKKYLDET-VLGYTG-----PTE---EYKKTVKKWMKDRHQWDIQT--DWIINTAGVVPAVFNAVRE 108 (394)
T ss_dssp SCSSCCCHHHHHHHHHHHHHC-CCSSBC-----CCH---HHHHHHHHHHHHHHCCCCCG--GGEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhCC-CcCCCC-----CCH---HHHHHHHHHHHHhcCCCCCC--cceEeeccchhhhhhhhcc
Confidence 345577999999998877543 235543 544 78888999999999986432 256666665 599999999
Q ss_pred hccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--C
Q 016668 188 ILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--D 265 (385)
Q Consensus 188 ll~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~ 265 (385)
+++|||+|++.+|.+.++.. .....|.....++....+..+.+|.+.++..+...++|+|++++++||+ .
T Consensus 109 ~~~pgd~vi~~~p~~~~~~~--------~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v 180 (394)
T d1c7na_ 109 FTKPGDGVIIITPVYYPFFM--------AIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRV 180 (394)
T ss_dssp HCCTTCEEEECSSCCTHHHH--------HHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBC
T ss_pred ccccccccccccCcccchhh--------HHhhhhhcccccccccccccccchhhhhhhhhccccceEEEeccccccccee
Confidence 99999999999886654322 2334554333333222222346899999888765568899999888874 3
Q ss_pred C---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----C---CcEEEECCCccC--ccccEEEEEEeCCCCch
Q 016668 266 F---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----Y---CDVVTTTTHKSL--RGPRGGMIFFKKDPVLG 333 (385)
Q Consensus 266 ~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~----g---aDiv~~S~hK~l--~GprgG~I~~~~~~~~~ 333 (385)
. ++++|+++|++++++||+|++| ..+++.+....+.. . .-+++.|++|++ +|+|.|++++.+.
T Consensus 181 ~s~~~l~~l~~~a~~~~~~ii~De~Y-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~---- 255 (394)
T d1c7na_ 181 WKKDELQKIKDIVLKSDLMLWSDEIH-FDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNP---- 255 (394)
T ss_dssp CCHHHHHHHHHHHHHSSCEEEEECTT-TTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCH----
T ss_pred ccHHHhhhhhccccccceeEeccccc-cccccCCccccchhhhhcccccceeecccccccccccccccccccccCh----
Confidence 3 3678899999999999999997 56665543222211 1 126789999985 7899887777764
Q ss_pred hHHHHHHhhc
Q 016668 334 VELESAINNA 343 (385)
Q Consensus 334 ~~~~~~i~~~ 343 (385)
++.+.+...
T Consensus 256 -~i~~~~~~~ 264 (394)
T d1c7na_ 256 -DIRERFTKS 264 (394)
T ss_dssp -HHHHHHHHH
T ss_pred -hhhhhhhhh
Confidence 566655443
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=2.3e-17 Score=159.86 Aligned_cols=231 Identities=14% Similarity=0.100 Sum_probs=158.7
Q ss_pred cccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHH
Q 016668 107 LIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (385)
Q Consensus 107 Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~ 186 (385)
++|.+..+++.|+++|.....++ .+.++. ++-+.+++.++++|+.+++ +.+++.|||.|+.+++.
T Consensus 4 ~~PGP~~v~~~V~~am~~~~~~h-----------r~~~f~-~i~~~~~~~l~~ll~~~~~---~i~~~gsgT~a~e~~~~ 68 (348)
T d1iuga_ 4 LTPGPVRLHPKALEALARPQLHH-----------RTEAAR-EVFLKARGLLREAFRTEGE---VLILTGSGTLAMEALVK 68 (348)
T ss_dssp CSSSSCCCCHHHHHHHHSCCCCT-----------TSHHHH-HHHHHHHHHHHHHHTCSSE---EEEEESCHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHhcCCCCCC-----------CCHHHH-HHHHHHHHHHHHHhCCCCC---EEEEeCchHHHHHHHHH
Confidence 67889999999999987543221 133444 4555589999999998764 56677888999999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEc--CCCCCC
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAG--ASAYPR 264 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~--~s~~~~ 264 (385)
.+++|||+|++..- |+++..+. ..+...+..++...++. ...++++++ ...+++.+++. .++++.
T Consensus 69 nl~~~g~~vlv~~~---G~f~~~~~---~~a~~~~~~~~~~~~~~---g~~~~~~~~----~~~~~~~v~~~h~eTstG~ 135 (348)
T d1iuga_ 69 NLFAPGERVLVPVY---GKFSERFY---EIALEAGLVVERLDYPY---GDTPRPEDV----AKEGYAGLLLVHSETSTGA 135 (348)
T ss_dssp HHCCTTCEEEEEEC---SHHHHHHH---HHHHHTTCEEEEEECCT---TCCCCTTTS----CCSSCSEEEEESEETTTTE
T ss_pred hcccccccceeecc---hHHHHHHH---HHHHhcCcccccccccC---CCccccccc----cccCCCeeEEEecchhhhh
Confidence 99999999998753 55443321 23345566555555432 223443332 23467777653 355778
Q ss_pred CCCHHHHHHHHHHc--CcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCC-------c
Q 016668 265 DFDYPRMRQIADAV--GALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPV-------L 332 (385)
Q Consensus 265 ~~dl~~I~~ia~~~--ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~-------~ 332 (385)
..|+++|.++|+++ ++++++|+.++.|.. +-+++ ++|++++|.||+|.||.| |+++.+++.+ .
T Consensus 136 ~~~i~~i~~~~~~~~~~~l~~vDavss~g~~-----~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~ 210 (348)
T d1iuga_ 136 LADLPALARAFKEKNPEGLVGADMVTSLLVG-----EVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGY 210 (348)
T ss_dssp ECCHHHHHHHHHHHCTTCEEEEECTTTBTTB-----CCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSS
T ss_pred hccHHHHHHHHHhhhccceeechhhhccccc-----ccccccccCCEEEeccccceecCCceeeeeechHHHhhhccccc
Confidence 89999999999987 489999998876643 33454 799999999999999998 8888876411 1
Q ss_pred hhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCc
Q 016668 333 GVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSP 370 (385)
Q Consensus 333 ~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~ 370 (385)
+.++...++.........+|..+.+.|+..||+++..+
T Consensus 211 ~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~ 248 (348)
T d1iuga_ 211 YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR 248 (348)
T ss_dssp TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH
Confidence 11333333222222233478999999999999988654
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=2.1e-17 Score=159.89 Aligned_cols=224 Identities=16% Similarity=0.123 Sum_probs=151.1
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhccccc--cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELI--ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKR 156 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Li--asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~ 156 (385)
++.+...+++.+|..+..- .++..-|+|- .++..+++.+++++...+... .+|+. ..|.+ ++++ .
T Consensus 3 ~~~~~~~~~~~~~~~~~~l-a~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~--~~Y~~---~~G~~---elr~----a 69 (368)
T d1v2da_ 3 LHPRTEAAKESIFPRMSGL-AQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQ--DQYAP---PAGLP---ALRE----A 69 (368)
T ss_dssp CCGGGGGC---CHHHHHHH-HHHHTCEECCCCSCSSCCCHHHHHHHHHHTTTS--CSCCC---TTCCH---HHHH----H
T ss_pred CChhhhhcCCCHHHHHHHH-hccCCCEEecCCCCCCCCCHHHHHHHHHHhhcc--cCCCC---CcCCH---HHHH----H
Confidence 4567788888999877643 3333445663 445668899999998876532 35665 23544 4544 5
Q ss_pred HHHHcCCCCCCCcceeecCC-cHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCC
Q 016668 157 ALAAFNLDENKWGVNVQPLS-GSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDEST 235 (385)
Q Consensus 157 la~lfg~~~~~~~~~V~~~s-Gs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 235 (385)
++++++++.+ +|.+++ +++|+..++.+++++||.|++.+|.+..+.. .....|..+...+++...++
T Consensus 70 iA~~~~~~~~----~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~~~~ 137 (368)
T d1v2da_ 70 LAEEFAVEPE----SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGAKARLVRLDLTPEG 137 (368)
T ss_dssp HHHHHTSCGG----GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEEETTE
T ss_pred HHhhcccCCc----ceeeccchHHHHHHHhhccccccccccccCCcchhhhh--------HHHhcCCccceecccccccc
Confidence 6778899875 445555 5569999999999999999999986654322 33456666666665554455
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCCC---CCcE
Q 016668 236 GLVDYDMLEKTAILFRPKLIIAGASAYPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCDV 307 (385)
Q Consensus 236 ~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~---gaDi 307 (385)
+.+|++++++.+++ ++++|++..++||+ ..+ +++|+++|+++|++++.|+++... ......+.... ...+
T Consensus 138 ~~~d~~~l~~~~~~-~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (368)
T d1v2da_ 138 FRLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDEL-YYGERPRRLREFAPERTF 215 (368)
T ss_dssp EECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BSSSCCCCHHHHCTTTEE
T ss_pred ccCCHHHHHHhhcc-CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhh-cccccccccccccccccc
Confidence 68999999998865 67888888888773 444 788999999999999999987433 22221111111 2235
Q ss_pred EEECCCcc--CccccEEEEEEeCC
Q 016668 308 VTTTTHKS--LRGPRGGMIFFKKD 329 (385)
Q Consensus 308 v~~S~hK~--l~GprgG~I~~~~~ 329 (385)
++.|++|. ++|.|.|+++.+++
T Consensus 216 ~~~~~sk~~~~~G~R~g~~~~~~~ 239 (368)
T d1v2da_ 216 TVGSAGKRLEATGYRVGWIVGPKE 239 (368)
T ss_dssp EEEEHHHHTTCGGGCCEEEECCTT
T ss_pred eeeccccccccccccccccccccc
Confidence 66677765 47889999998885
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=1.7e-17 Score=162.83 Aligned_cols=168 Identities=20% Similarity=0.269 Sum_probs=129.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|.+.|. ||++.+.||+ +++++.|.+. .+.+.||+.|+.+++.+++++||+|++.+..|||... ..
T Consensus 50 ~~~Y~R~--~nPT~~~LE~----~la~LEg~~~-----a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~--l~- 115 (392)
T d1gc0a_ 50 GHFYSRI--SNPTLNLLEA----RMASLEGGEA-----GLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFA--FL- 115 (392)
T ss_dssp ---------CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHH--HH-
T ss_pred CceecCC--CChHHHHHHH----HHHHHhCCcc-----eeehhhHHHHHHHHHHhhccCCCeeecccccchhhhh--hh-
Confidence 4555554 8999998887 5889999876 3678999999999999999999999999988876422 11
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
...+...|..+..+ | .-|++++++.+++ ++|+|++..+.|| ...|+++|+++||++|+++++|++.+.
T Consensus 116 -~~~~~~~Gi~~~~~----d----~~d~~~~~~ai~~-~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~at 185 (392)
T d1gc0a_ 116 -HHGIGEFGVKLRHV----D----MADLQALEAAMTP-ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCT 185 (392)
T ss_dssp -HHTGGGGTCEEEEE----C----TTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTH
T ss_pred -hhhhccCCcccccC----C----ccCHHHHHHhCCC-CCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccC
Confidence 01234456544332 2 2488999999975 7899999998887 578999999999999999999999865
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCccc---cEEEEEEeCC
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGP---RGGMIFFKKD 329 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gp---rgG~I~~~~~ 329 (385)
++. ..|++ |+|+++.|++|.+.|. -+|.++++++
T Consensus 186 P~~-----~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~ 223 (392)
T d1gc0a_ 186 PYL-----QRPLELGADLVVHSATKYLSGHGDITAGIVVGSQA 223 (392)
T ss_dssp HHH-----CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHH
T ss_pred ccc-----cChHHhCCCEEEEecceeecCCcccccccccchhH
Confidence 543 47888 9999999999999885 3688888873
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.73 E-value=5e-17 Score=159.12 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=136.2
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHD 193 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pGD 193 (385)
..+-++++.+.+.... .++.+.+.+.++|+ ++++++|.++ .|.+.|||.|+.+++.++ ++|||
T Consensus 12 ~~~~~~~~~~~l~~g~-------~~~~~g~~v~~fE~----~~a~~~g~~~-----~v~~~SGt~Al~lal~~l~~~~gd 75 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQ-------WWRMGGDEVNSFER----EFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPGT 75 (384)
T ss_dssp CHHHHHHHHHHHHTSC-------CBTTTCSHHHHHHH----HHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTTC
T ss_pred CHHHHHHHHHHHHcCC-------eeecCCHHHHHHHH----HHHHHHCcCe-----EEEeCCHHHHHHHHHHHcCCCCCC
Confidence 4444566666664321 01223356677775 6899999998 378899999999999998 89999
Q ss_pred EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHH
Q 016668 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQ 273 (385)
Q Consensus 194 ~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ 273 (385)
+|++++..+.+.. ..+...|. +++..+++++++.+|++.+++.+.. ++|+|++ .+.++...|+++|.+
T Consensus 76 eVi~p~~t~~a~~--------~ai~~~g~--~p~~~d~~~~~~~~d~~~~~~~i~~-~tk~i~~-~~~~g~~~d~~~i~~ 143 (384)
T d1b9ha_ 76 EVIVPAFTFISSS--------QAAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIMP-VHMAGLMADMDALAK 143 (384)
T ss_dssp EEEEESSSCTHHH--------HHHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECC-BCGGGCCCCHHHHHH
T ss_pred EEEEecccccccc--------cccccccc--ccccccccccccccchhhhcccccc-ccccccc-ccccccccccccchh
Confidence 9999887554321 13456676 4455567777889999999998865 6777654 344677889999999
Q ss_pred HHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECC--CccCccccEEEEEEeCC
Q 016668 274 IADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTT--HKSLRGPRGGMIFFKKD 329 (385)
Q Consensus 274 ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~--hK~l~GprgG~I~~~~~ 329 (385)
+|+++|++||.|+||+.|....|..... ..|+.++|+ +|.+.+..||+|+++++
T Consensus 144 ~~~~~~i~lieD~a~a~ga~~~g~~~g~--~g~~~~~Sf~~~K~i~~g~GG~i~t~~~ 199 (384)
T d1b9ha_ 144 ISADTGVPLLQDAAHAHGARWQGKRVGE--LDSIATFSFQNGKLMTAGEGGAVVFPDG 199 (384)
T ss_dssp HHHHHTCCBCEECTTCTTCEETTEEGGG--SSSCEEEECCTTSSSCSSSCEEEEECTT
T ss_pred hhhhhhhhhhhhhceecccccCCEecCc--ccccceecccccccccccccchhhhhhH
Confidence 9999999999999999887665543221 346555555 69898889999999887
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.2e-16 Score=156.72 Aligned_cols=239 Identities=17% Similarity=0.150 Sum_probs=165.1
Q ss_pred ccCCCCC----cHHHHHHHhhHhhccCCCCCCCCCCCCCc-HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHH
Q 016668 108 IASENFT----SRAVMEAVGSCLTNKYSEGLPGKRYYGGN-EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182 (385)
Q Consensus 108 iasen~~----s~~V~~al~s~l~~~y~~g~p~~r~~~G~-~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~ 182 (385)
++|.+|. +|.|+++....+ .+|..|..++|...|+ +...++|+ ++++++|.+. .+.++||+.||.
T Consensus 43 f~s~dYLGl~~~p~v~~a~~~a~-~~~G~~~~~sr~~~g~~~~~~~lE~----~LA~~~g~e~-----al~~~SG~~an~ 112 (383)
T d1bs0a_ 43 FSSNDYLGLSHHPQIIRAWQQGA-EQFGIGSGGSGHVSGYSVVHQALEE----ELAEWLGYSR-----ALLFISGFAANQ 112 (383)
T ss_dssp CSCCCTTSGGGCHHHHHHHHHHH-HHHCSCCCSBTTTTCCCHHHHHHHH----HHHHHHTCSE-----EEEESCHHHHHH
T ss_pred EEcccccccCCCHHHHHHHHHHH-HHhCCCCCccccccCcchHHHHHHH----HHHHhcCCCc-----eEEecccchhhH
Confidence 3677775 889999988776 4677788888877776 45566665 6889999886 477899999999
Q ss_pred HHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcC--CcEEEEcC-
Q 016668 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR--PKLIIAGA- 259 (385)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~--pklIi~~~- 259 (385)
.++.++.+++|.|+.....|.+.. ..+...+.. .+.++ ..|++++++.+...+ .++|+++.
T Consensus 113 ~~i~al~~~~d~v~~d~~~h~si~--------~g~~~~~~~--~~~~~------hnd~~~le~~l~~~~~~~~~vv~e~v 176 (383)
T d1bs0a_ 113 AVIAAMMAKEDRIAADRLSHASLL--------EAASLSPSQ--LRRFA------HNDVTHLARLLASPCPGQQMVVTEGV 176 (383)
T ss_dssp HHHHHHCCTTCEEEEETTCCHHHH--------HHHHTSSSE--EEEEC------TTCHHHHHHHHHSCCSSCEEEEEESB
T ss_pred HHHHhhcCCCceEEeeccccHHHh--------hccccCCCc--ceEec------chHHHHHHHHhcccCCCceEEEecCC
Confidence 999999999999998775443221 123344443 33433 468999999886543 34666654
Q ss_pred -CCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEECCCccCccccEEEEEEeCCCCchhH
Q 016668 260 -SAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVE 335 (385)
Q Consensus 260 -s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~ 335 (385)
+..|...|+++|.++|++||++|++|++|+.|....... ..... ..|+++.|+.|.+ |..||+++++. +
T Consensus 177 ~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~-g~~Gg~v~~~~------~ 249 (383)
T d1bs0a_ 177 FSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF-GVSGAAVLCSS------T 249 (383)
T ss_dssp CTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT-SSCCEEEEECH------H
T ss_pred CCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccc-cccccccccch------h
Confidence 335778899999999999999999999999887643211 11112 3467888999986 56788888887 5
Q ss_pred HHHHHhhccCCCccC-CChHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016668 336 LESAINNAVFPGLQG-GPHNHTIGGLAVCLKHAQSPEFKVYQNKS 379 (385)
Q Consensus 336 ~~~~i~~~~fp~~qg-~p~~~~iaala~Al~e~~~~~~~~y~~~v 379 (385)
+.+.+.....+...+ ++.+..+++...+++.+...+...-+++.
T Consensus 250 ~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l 294 (383)
T d1bs0a_ 250 VADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKL 294 (383)
T ss_dssp HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 677665443333332 44555666666677666655544443333
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.73 E-value=6.8e-17 Score=158.77 Aligned_cols=199 Identities=18% Similarity=0.135 Sum_probs=142.7
Q ss_pred CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCc-----ceeecCCcH-HHHHHHHH
Q 016668 113 FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWG-----VNVQPLSGS-PANFEVYT 186 (385)
Q Consensus 113 ~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~-----~~V~~~sGs-~A~~~a~~ 186 (385)
.+++.+++++...+......+|+. ..|.+ +|++.+++++.+.|+.... ++ .+|..++|+ .|+..++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~LReaia~~~~~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~~ 119 (412)
T d1bw0a_ 47 LTSAAQIKKLKEAIDSQECNGYFP---TVGSP---EAREAVATWWRNSFVHKEE-LKSTIVKDNVVLCSGGSHGILMAIT 119 (412)
T ss_dssp CCCHHHHHHHHHHHHTTCSSSCCC---TTCCH---HHHHHHHHHHHHHHCCSTT-TGGGCCGGGEEEESHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhCCCCCCCCC---CcCCH---HHHHHHHHHHHHhcCcccc-cCCCCCCCeEEEecccccchhhhhh
Confidence 456788888877666555556765 34665 7888888899988754321 11 156667766 59999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-CCCCCHHHHHHHhhhcCCcEEEEcCCCCCC-
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES-TGLVDYDMLEKTAILFRPKLIIAGASAYPR- 264 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~~~~pklIi~~~s~~~~- 264 (385)
++++|||+|++.+|.|.++.. .+...|..+..++ ++++ ++.+|++++++.... ++++++++.++||+
T Consensus 120 ~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~G~~~~~v~--~~~~~~~~~~~~~l~~~~~~-~~~~~~l~np~NPtG 188 (412)
T d1bw0a_ 120 AICDAGDYALVPQPGFPHYET--------VCKAYGIGMHFYN--CRPENDWEADLDEIRRLKDD-KTKLLIVTNPSNPCG 188 (412)
T ss_dssp HHCCTTCEEEEEESCCTHHHH--------HHHHTTCEEEEEE--EEGGGTTEECHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred hhhccccceeeeeccchhhhh--------hhhccCccccccc--cccccccchhhHHHHhhhhc-ccccccccccccccc
Confidence 999999999999998766532 3456777655555 4332 457999999988754 67888888888773
Q ss_pred -CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC-------CCCc--EEEECCCccC--ccccEEEEEEeCC
Q 016668 265 -DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-------KYCD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 265 -~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~-------~gaD--iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
.. ++++|.++|++++++||+|+++ .++.+.+..+.+. +..+ +++.|++|++ +|+|.|++++.++
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~vi~De~Y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~ 267 (412)
T d1bw0a_ 189 SNFSRKHVEDIVRLAEELRLPLFSDEIY-AGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDP 267 (412)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCEEEECTT-TTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECT
T ss_pred ccchhhhccccccccccCCeeeechhhH-HHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccch
Confidence 33 4788999999999999999997 6777665433221 1112 5678999986 7899999999875
Q ss_pred C
Q 016668 330 P 330 (385)
Q Consensus 330 ~ 330 (385)
.
T Consensus 268 ~ 268 (412)
T d1bw0a_ 268 H 268 (412)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.72 E-value=1e-16 Score=155.39 Aligned_cols=234 Identities=14% Similarity=0.064 Sum_probs=159.9
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+-++|+...+++.|++||..... +. .+.++.+.+ +.+++.+++++|++..+ +.+++.|||.++.++
T Consensus 19 ~l~~PGP~~~~~~V~~Am~~~~~--------~h---r~~ef~~i~-~~~r~~L~~ll~~~~~~--~i~~~gsgT~a~ea~ 84 (388)
T d2ch1a1 19 IMMGPGPSNCSKRVLTAMTNTVL--------SN---FHAELFRTM-DEVKDGLRYIFQTENRA--TMCVSGSAHAGMEAM 84 (388)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCCC--------CT---TCHHHHHHH-HHHHHHHHHHHTCCCSC--EEEESSCHHHHHHHH
T ss_pred eeeeCCCCCCCHHHHHHhCcCCC--------CC---CCHHHHHHH-HHHHHHHHHHhCCCCCe--EEEEcCcHHHHHHHH
Confidence 56789999999999999753321 21 144555544 45899999999997531 334455678899999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC--CCC
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SAY 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~--s~~ 262 (385)
+.+++.+||+++++.. |+.++.+. ......+.....+.. . +....|.+.+++.....+++++.+.. +.+
T Consensus 85 ~~~l~~~~~~vl~~~~---g~~~~~~~---~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~t 155 (388)
T d2ch1a1 85 LSNLLEEGDRVLIAVN---GIWAERAV---EMSERYGADVRTIEG--P-PDRPFSLETLARAIELHQPKCLFLTHGDSSS 155 (388)
T ss_dssp HHHHCCTTCEEEEEES---SHHHHHHH---HHHHHTTCEEEEEEC--C-TTSCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred HHHhcccccccccccc---ccccccch---hhhhhhccccccccc--c-cccccchhhhhhhhccCCcceeeeeeccccc
Confidence 9999999999998764 44433221 122334444444442 2 23467888888877767889887643 446
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA 339 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~ 339 (385)
+...|+++|.++|+++|+++++|++++.|.. +..++ ++|++++|.||++.||.| |+++.+++ ..+.
T Consensus 156 G~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~-----pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~------~~~~ 224 (388)
T d2ch1a1 156 GLLQPLEGVGQICHQHDCLLIVDAVASLCGV-----PFYMDKWEIDAVYTGAQKVLGAPPGITPISISPK------ALDV 224 (388)
T ss_dssp TEECCCTTHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHH------HHHH
T ss_pred ccccchhhhcchhccccceeeeeeeeccccc-----ccchhccCceEEEEccccccCCCCeEEEEeccHH------HHHh
Confidence 7788999999999999999999999987743 33344 789999999999999988 56655542 2221
Q ss_pred Hh------------------hc----cCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 340 IN------------------NA----VFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 340 i~------------------~~----~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
.. .. ......+.+..+.+.++..+++.+.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~ 279 (388)
T d2ch1a1 225 IRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGL 279 (388)
T ss_dssp HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred hhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhh
Confidence 11 10 11223456788888898888887654443
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=6.1e-17 Score=156.89 Aligned_cols=200 Identities=16% Similarity=0.108 Sum_probs=138.8
Q ss_pred CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCC-cHHHHHHHHHHh
Q 016668 110 SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLS-GSPANFEVYTAI 188 (385)
Q Consensus 110 sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~s-Gs~A~~~a~~al 188 (385)
++..+|+.+++++...+.+.. .+|+. ..|.+ ++++...+++.+.+|.+.+. .++.+++ +++|+..++.++
T Consensus 38 p~~~~p~~i~~~~~~~~~~~~-~~Y~~---~~G~~---~lR~aia~~~~~~~~~~~~~--~~i~~t~G~~~al~~~~~~l 108 (375)
T d1o4sa_ 38 PDFPTPEPVVEEAVRFLQKGE-VKYTD---PRGIY---ELREGIAKRIGERYKKDISP--DQVVVTNGAKQALFNAFMAL 108 (375)
T ss_dssp CSSCCCHHHHHHHHHHHTTCC-CCCCC---TTCCH---HHHHHHHHHHHHHHTCCCCG--GGEEEESHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCC-cCCCC---CcCCH---HHHHHHHhhhhhcccccccc--ccccccCcHHHHHHHHHHHH
Confidence 344578999999988765432 35655 23555 78888888999888876532 2444455 456999999999
Q ss_pred ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC
Q 016668 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF 266 (385)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~ 266 (385)
++|||+|++++|.+..+.. .....+.....++...+ +.+.+|.+.++..... ++++++++.|+||+ ..
T Consensus 109 ~~~gd~vlv~~P~y~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~nP~NPTG~~~ 178 (375)
T d1o4sa_ 109 LDPGDEVIVFSPVWVSYIP--------QIILAGGTVNVVETFMS-KNFQPSLEEVEGLLVG-KTKAVLINSPNNPTGVVY 178 (375)
T ss_dssp CCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECCGG-GTTCCCHHHHHHTCCT-TEEEEEEESSCTTTCCCC
T ss_pred hCCCCEEEEccCccccchh--------hhhcccccccccccccc-ccccchhHHHHHhhcc-CccEEEEeCCCCCccCCC
Confidence 9999999999987654432 22344554444443222 3458899998887654 67888888888874 22
Q ss_pred ---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC---CCCc--EEEECCCccC--ccccEEEEEEeCC
Q 016668 267 ---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 267 ---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~gaD--iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
.+++|.++|++++++|+.|+.+. .+...+....++ +..+ +++.|++|++ +|+|.|++++.++
T Consensus 179 s~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~ 250 (375)
T d1o4sa_ 179 RREFLEGLVRLAKKRNFYIISDEVYD-SLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEK 250 (375)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTT-TSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred CHHHHHHHHHhHHHcCCceehHhhhc-cccccccccccccccCCCCCEEEEeechhhccCCcccccccccccc
Confidence 47888999999999999999763 443332222211 1223 6789999986 6899999999883
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.72 E-value=6.6e-17 Score=158.68 Aligned_cols=169 Identities=22% Similarity=0.275 Sum_probs=132.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcc
Q 016668 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (385)
Q Consensus 132 ~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (385)
.||.+.|. ||+..+.||+ +++++.|.+. .+.+.||+.|+.+++.++++|||+|++.+.-||+... ..
T Consensus 53 ~~~~Y~R~--~nPT~~~LE~----~la~LEgg~~-----a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~--~~ 119 (397)
T d1y4ia1 53 SGYIYTRL--GNPTTDALEK----KLAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHA--FL 119 (397)
T ss_dssp SSSCCCTT--SCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHH--HH
T ss_pred CCceeeCC--CCHHHHHHHH----HHHHHhCCcc-----ceeehHHHHHHHHHHhhccCCCCeeeeecccccccch--hh
Confidence 35666665 8999998887 5888999876 3678899999999999999999999999887766422 11
Q ss_pred ccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccc
Q 016668 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHI 289 (385)
Q Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~ 289 (385)
. ..+...|..+..+ | .-|.+.+++.+++ ++|+|++..+.|| ...|+++|+++|+++|+++++|++.+
T Consensus 120 ~--~~l~~~Gi~~~~v----d----~~d~~~~~~~i~~-~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~a 188 (397)
T d1y4ia1 120 S--HSMPKFGINVRFV----D----AGKPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFM 188 (397)
T ss_dssp H--THHHHTTCEEEEE----C----TTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred h--cccCCCceEeecc----C----CCCHHHHHHhcCC-CCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCccc
Confidence 0 1233456544432 2 2378999999965 7899999998888 57899999999999999999999864
Q ss_pred ccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCC
Q 016668 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (385)
Q Consensus 290 ~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~ 329 (385)
.. ....|++ |+|+++.|+.|.+.|.. ||.++++++
T Consensus 189 tP-----~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~ 227 (397)
T d1y4ia1 189 SP-----YCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQE 227 (397)
T ss_dssp CT-----TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH
T ss_pred Cc-----ccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHH
Confidence 43 3457888 99999999999998854 688888874
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=8.1e-17 Score=158.89 Aligned_cols=257 Identities=11% Similarity=0.033 Sum_probs=169.6
Q ss_pred hhhhcccCChHHHHHHHHHHHHhhhccccc--cCCCCCcHHHHHHHhhHhhccC-CCCCCCCCCCCCcHHHHHHHHHHHH
Q 016668 79 VDYSLGEADPEVCEIITKEKERQFKSLELI--ASENFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQK 155 (385)
Q Consensus 79 ~~~~l~~~dp~~~~~i~~e~~~~~~~l~Li--asen~~s~~V~~al~s~l~~~y-~~g~p~~r~~~G~~~~~~le~~~~~ 155 (385)
.++||+.+|+..+..+.+. ....+-|+|- .++..+|+.+++++...+.+.. ..+|+. ..|.+ ++++..++
T Consensus 3 ~~~r~~~~~~~~~~~~~~~-~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~---~~G~~---~LReaia~ 75 (418)
T d1w7la_ 3 QARRLDGIDYNPWVEFVKL-ASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTK---TFGYP---PLTKILAS 75 (418)
T ss_dssp SCGGGTTCCCCTHHHHHHH-HHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCC---TTCCH---HHHHHHHH
T ss_pred cCccccCCCCCHHHHHHHH-hCCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCC---CcCCH---HHHHHHHH
Confidence 4678888888777544332 1122334554 4456678999999987775432 234554 23555 78887888
Q ss_pred HHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccc---
Q 016668 156 RALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL--- 231 (385)
Q Consensus 156 ~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~--- 231 (385)
++.+.+|.+.+. ..+|..++|+ +|+..++.++++|||.|++.+|.+..+.. .+...|.....+++..
T Consensus 76 ~~~~~~g~~~~~-~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~--------~~~~~g~~~v~~~~~~~~~ 146 (418)
T d1w7la_ 76 FFGELLGQEIDP-LRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP--------MTMMAGGRPVFVSLKPGPI 146 (418)
T ss_dssp HHHHHHTCCCCH-HHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEECC-
T ss_pred HHHHHhCCCCCc-ccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHH--------HHHHcCCEeeccccccccc
Confidence 999999987521 1256677776 59999999999999999999987655432 2334555433333221
Q ss_pred ------cCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccC
Q 016668 232 ------DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (385)
Q Consensus 232 ------~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~ 300 (385)
+.++..+|.+++...... ++++|++..++||+ .. ++++|.++|+++++++|.|+++ .++.+.+..+.
T Consensus 147 ~~~~~~~~~~~~~d~~~~~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y-~~l~~~~~~~~ 224 (418)
T d1w7la_ 147 QNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVY-QWMVYDGHQHI 224 (418)
T ss_dssp --CCSEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCC
T ss_pred cccccccccCcccchhhhhccccc-cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhh-HHhhcCCCCCC
Confidence 112346788888876644 56788888888773 33 4788999999999999999996 66666553222
Q ss_pred CC---C-CCc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHH
Q 016668 301 PF---K-YCD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGG 359 (385)
Q Consensus 301 p~---~-gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaa 359 (385)
++ . ..| +++.|++|++ +|.|.|++++++ ++.+++.........+.++..+.++
T Consensus 225 ~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~------~~~~~l~~~~~~~~~~~~~~~q~~~ 285 (418)
T d1w7la_ 225 SIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD------HIMKHLRTVHQNSVFHCPTQSQAAV 285 (418)
T ss_dssp CGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCH------HHHHHHHHHHHTTTSCCCHHHHHHH
T ss_pred CHHHccccccccceecccCccccCCCCcccccccch------hhhhhhccccccccccccchhhHHH
Confidence 22 2 233 6799999985 788999999987 5666665544333344455544443
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.71 E-value=1.7e-16 Score=152.90 Aligned_cols=196 Identities=11% Similarity=0.087 Sum_probs=135.3
Q ss_pred cccccCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHH
Q 016668 105 LELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEV 184 (385)
Q Consensus 105 l~Liasen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a 184 (385)
+-+.|+...+++.|+++|.....+ +.+.++.+.+++ +++.+++++|++..+ +.+++.|||.++.++
T Consensus 20 ~l~~PGP~~v~~~Vl~am~~~~~~-----------hr~~ef~~i~~~-~r~~l~~ll~~~~~~--~i~~~g~gT~~~~~~ 85 (377)
T d1vjoa_ 20 LLLGPGPSNAHPSVLQAMNVSPVG-----------HLDPAFLALMDE-IQSLLRYVWQTENPL--TIAVSGTGTAAMEAT 85 (377)
T ss_dssp EECSSSCCCCCHHHHHHHSSCCCC-----------TTSHHHHHHHHH-HHHHHHHHHTCCCSC--EEEESSCHHHHHHHH
T ss_pred eeecCCCCCCCHHHHHHhCcCCCC-----------CCCHHHHHHHHH-HHHHHHHHhCCCCCe--EEEEcCcHHHHHHHH
Confidence 456688999999999998532211 125566655555 789999999997642 334445678899999
Q ss_pred HHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcC--CCC
Q 016668 185 YTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGA--SAY 262 (385)
Q Consensus 185 ~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~--s~~ 262 (385)
+..++.+||++++....+ .+..+. ......+.....+. .. .+...+.+..+......+++++.+.. +.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~t 156 (377)
T d1vjoa_ 86 IANAVEPGDVVLIGVAGY---FGNRLV---DMAGRYGADVRTIS--KP-WGEVFSLEELRTALETHRPAILALVHAETST 156 (377)
T ss_dssp HHHHCCTTCEEEEEESSH---HHHHHH---HHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred HHhccccccccceeeech---hhhhhh---hhhhhhcccccccc--cC-CCCcccchhhhhhhhcCcceeeeeeeeeccc
Confidence 999999999999887533 222111 11223333333332 22 23456666666655555788876643 346
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeC
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~ 328 (385)
+...|+++|.++||++|+++++|++|+.|.. +.+++ ++|++++|.||++.||.| |+++.++
T Consensus 157 g~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~-----~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~ 220 (377)
T d1vjoa_ 157 GARQPLEGVGELCREFGTLLLVDTVTSLGGV-----PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSS 220 (377)
T ss_dssp TEECCCTTHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECH
T ss_pred eeeechhhhhhhhhhccceEEEecchhhhhh-----hhcccccccceeeecccccccCCCEEEEecchh
Confidence 7788999999999999999999999987754 33444 789999999999999887 4444444
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=2.8e-16 Score=153.05 Aligned_cols=257 Identities=12% Similarity=0.137 Sum_probs=170.6
Q ss_pred hhcccCChHHHHHHHHHHHHhhhccccc--cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 016668 81 YSLGEADPEVCEIITKEKERQFKSLELI--ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRAL 158 (385)
Q Consensus 81 ~~l~~~dp~~~~~i~~e~~~~~~~l~Li--asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la 158 (385)
++|..+...+|..+.+.. +..+.|+|- .++..+|+.+++++...+.+. ..+|+. ..|.+ +|++..++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~a-~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~-~~~Y~~---~~G~~---~LReaia~~~~ 77 (382)
T d1u08a_ 6 SKLPQLGTTIFTQMSALA-QQHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAP---MTGVQ---ALREAIAQKTE 77 (382)
T ss_dssp CSCCCCCCCHHHHHHHHH-HHTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCC---TTCCH---HHHHHHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHh-ccCCCEEccCCCCCCCCCHHHHHHHHHHHhcC-CCCCCC---CcCCH---HHHHHHHHHHH
Confidence 456666677787666653 233556666 456678899999998877543 346654 34665 78888889999
Q ss_pred HHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCC
Q 016668 159 AAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGL 237 (385)
Q Consensus 159 ~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ 237 (385)
+.+|.+.. ...+|.+++|+ +|+..++.+++++||.|++.+|.+..+.. .....|..+..++ ++.+.+.
T Consensus 78 ~~~g~~~~-~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~~~~--~~~~~~~ 146 (382)
T d1u08a_ 78 RLYGYQPD-ADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGGIVKRMA--LQPPHFR 146 (382)
T ss_dssp HHHSCCCC-TTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEE--CCTTTCC
T ss_pred HHhCCCCC-CCceEEeccchHHHHHHHHhhcccccceEEEecccccchhh--------hhhhccccceecc--ccccccc
Confidence 99998642 11246666766 59999999999999999999986644322 2345565444444 5555678
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCccc-CCCC---CCc--
Q 016668 238 VDYDMLEKTAILFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA-DPFK---YCD-- 306 (385)
Q Consensus 238 iD~d~le~~i~~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~-~p~~---gaD-- 306 (385)
+|++++++...+ ++|+|++..++||+ .. ++++|.++|++++.+++.|+.+.. +...+..+ .+.. ..|
T Consensus 147 ~d~~~l~~~~~~-~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~-~~~~~~~~~~~~~~~~~~~~~ 224 (382)
T d1u08a_ 147 VDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEH-INFSQQGHASVLAHPQLRERA 224 (382)
T ss_dssp CCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTT-CBCCSSCCCCGGGSHHHHTTE
T ss_pred CCHHHHhhhhcc-CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhh-ccccccccccccccccccCcE
Confidence 999999998865 78899888888773 33 367788889999999999987633 23222211 2111 122
Q ss_pred EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 307 VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 307 iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
++..|++|++ +|+|.||+++++ ++.+.+.........+.+...+. +++.+++
T Consensus 225 i~~~s~SK~~~~pG~RiG~~v~~~------~~~~~~~~~~~~~~~~~~~~~q~-a~~~~l~ 278 (382)
T d1u08a_ 225 VAVSSFGKTYHMTGWKVGYCVAPA------PISAEIRKVHQYLTFSVNTPAQL-ALADMLR 278 (382)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCH------HHHHHHHHHHHHHTSSCCHHHHH-HHHHHHH
T ss_pred EEEeeccccccCCcccchhhhccc------hhHHHHHhhhccccccccccccc-ccccccc
Confidence 7889999986 789999999887 45555543322222333444444 4445554
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.8e-16 Score=155.03 Aligned_cols=168 Identities=23% Similarity=0.260 Sum_probs=129.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|.+.|. ||++...||+ +++++.|.+. .+.+.||..|+..++.+++++||+|++.+.-||+.... +.
T Consensus 41 ~~~Y~R~--~nPt~~~le~----~la~LEgg~~-----a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~--~~ 107 (384)
T d1cs1a_ 41 AHDYSRR--GNPTRDVVQR----ALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRL--FD 107 (384)
T ss_dssp SCSBTTT--CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH--HH
T ss_pred CCcccCC--CCHHHHHHHH----HHHHHhCCCc-----eEEecChHHHHHHHHhhcccccceecccccccchhhhh--hh
Confidence 4555554 8999998887 6888999876 46789999999999999999999999998777654221 00
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
..+...|.. ... ++ ..|.+++++.+.. ++|+|++..+.|| ...|+++|+++|+++|+++++|++...
T Consensus 108 --~~~~~~g~~--~~~--~d----~~d~~~~~~~~~~-~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~at 176 (384)
T d1cs1a_ 108 --SLAKRGCYR--VLF--VD----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLS 176 (384)
T ss_dssp --HHHTTTSCE--EEE--EC----TTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTC
T ss_pred --hhhcccccc--ccc--cc----CCCHHHHHhhccc-cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccC
Confidence 122333432 223 22 2578999988865 8999999998888 578999999999999999999999754
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCC
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~ 329 (385)
.+ ...|++ |+||++.|+.|++.|.. +|.++++++
T Consensus 177 P~-----~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~ 214 (384)
T d1cs1a_ 177 PA-----LQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP 214 (384)
T ss_dssp TT-----TCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSH
T ss_pred cc-----cccccccCCCEEEEccccccccCCCcccccccCCch
Confidence 43 457888 99999999999998864 588888775
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.68 E-value=2e-16 Score=155.04 Aligned_cols=224 Identities=13% Similarity=0.159 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHhh-hccccccC----C---CCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016668 89 EVCEIITKEKERQF-KSLELIAS----E---NFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (385)
Q Consensus 89 ~~~~~i~~e~~~~~-~~l~Lias----e---n~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~l 160 (385)
.++.++++-+...+ +.|+|--+ + .+..+.|++++.....+..+.+|+. ..|.+ +|++++++++.+.
T Consensus 14 ~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~---~~G~~---~lr~aia~~~~~~ 87 (401)
T d7aata_ 14 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLP---IAGLA---DFTRASAELALGE 87 (401)
T ss_dssp HHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCC---TTCCH---HHHHHHHHHHHCT
T ss_pred hHHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC---CCCCH---HHHHHHHHHHhcc
Confidence 36777766444322 44776633 2 2456899999887776655556765 35766 7888777777766
Q ss_pred cCCCCCCCcceeecCC--cH----HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC
Q 016668 161 FNLDENKWGVNVQPLS--GS----PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (385)
Q Consensus 161 fg~~~~~~~~~V~~~s--Gs----~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (385)
++..... ..+.++. ++ .++..++.++++|||+|++++|.+.+|.. .+...|..+..+++. +++
T Consensus 88 ~~~~~~~--~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~--------~~~~~g~~~~~~~~~-~~~ 156 (401)
T d7aata_ 88 NSEAFKS--GRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP--------IFRDAGLQLQAYRYY-DPK 156 (401)
T ss_dssp TCHHHHT--TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH--------HHHHTTCEEEEEECE-ETT
T ss_pred CCcccCc--CceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhh--------HHHHcCCeEEEEecc-ccc
Confidence 6543211 1222222 22 25666677889999999999998766532 345778766656643 234
Q ss_pred CCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC-----
Q 016668 235 TGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF----- 302 (385)
Q Consensus 235 ~~~iD~d~le~~i~~--~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~----- 302 (385)
++.+|++.+.+.+.. .++++++++.++||+ .. .+++|.++|++++++++.|+++ .++.+++..+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~~~ 235 (401)
T d7aata_ 157 TCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAY-QGFASGDINRDAWALRHF 235 (401)
T ss_dssp TTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC-TTTTTSCHHHHTHHHHHH
T ss_pred cccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccc-hhhhcCCcccchhhhhhh
Confidence 567899998877743 356788888888874 33 4788999999999999999996 5666554322111
Q ss_pred C--CCc-EEEECCCccC--ccccEEEEEEeCCC
Q 016668 303 K--YCD-VVTTTTHKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 303 ~--gaD-iv~~S~hK~l--~GprgG~I~~~~~~ 330 (385)
. ... +++.|++|++ +|+|.|++++..+.
T Consensus 236 ~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~ 268 (401)
T d7aata_ 236 IEQGIDVVLSQSYAKNMGLYGERAGAFTVICRD 268 (401)
T ss_dssp HHTTCCCEEEEECTTTSCCGGGCEEEEEEECSS
T ss_pred hhhhcccceeEeccccceeeccccceeecchHH
Confidence 1 222 6778888886 89999999998863
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.68 E-value=1.6e-16 Score=155.26 Aligned_cols=175 Identities=21% Similarity=0.242 Sum_probs=131.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|.+.|. ||++.+.||+ +++.+.|.+. .+.+.||+.|+. ++.+++++||+|++.+..||+....-
T Consensus 40 ~~~Y~R~--~nPt~~~le~----~la~LE~~~~-----a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~--- 104 (380)
T d1ibja_ 40 PYDYTRS--GNPTRDALES----LLAKLDKADR-----AFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLL--- 104 (380)
T ss_dssp SCSBTTT--CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHH---
T ss_pred CceeeCC--CChHHHHHHH----HHHHHcCCce-----EEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchh---
Confidence 4555554 8999988886 6889999876 367899999986 56789999999999998887653210
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEeccccc
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHIS 290 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~~ 290 (385)
.......|..+..+ + ..|.+++++.+++ ++|+|+++.+.|| ...|+++|+++|+++|+++++|++.+.
T Consensus 105 -~~~~~~~gi~~~~~----d----~~~~~~~~~ai~~-~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~at 174 (380)
T d1ibja_ 105 -SQVVPRSGVVVKRV----N----TTKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 174 (380)
T ss_dssp -HHTSGGGTCEEEEE----C----TTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTC
T ss_pred -hhhhcccccccccc----C----cchHHHHHHHhcc-CccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccc
Confidence 01223345543322 2 2478999998865 7899999998887 578999999999999999999999754
Q ss_pred cccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhh
Q 016668 291 GLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 291 Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.+ ...|++ |+|+++.|+.|.+.|.. +|.++.+++ ++.+++..
T Consensus 175 P~-----~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~-----~~~~~~~~ 220 (380)
T d1ibja_ 175 PV-----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----KLAKEVYF 220 (380)
T ss_dssp TT-----TCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSH-----HHHHHHHH
T ss_pred cc-----cccccccCCCEEEecccceeccccCccccccccchh-----hHHHHHHh
Confidence 33 357888 89999999999998853 588777765 55555543
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.68 E-value=9.8e-17 Score=158.68 Aligned_cols=182 Identities=14% Similarity=0.130 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCCCEEeecCCCCCccccCCccccccccccCcce
Q 016668 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY 223 (385)
Q Consensus 146 ~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~ 223 (385)
...++.....++.+++|.+.. ..+.+.+|+.++.+++.++ ..++++|+++...|.+.. +.+...|..
T Consensus 111 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~--------k~~~~~g~~ 179 (434)
T d2z67a1 111 MYALTNKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI--------KAVSFVGMN 179 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH--------HHHHHTTCE
T ss_pred HHHHHHHHHHHHHHhcCCCcc---eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHH--------HHHHHhCCc
Confidence 446666667788999999874 3344455556777777776 348999999876543221 345567776
Q ss_pred EEEEeccccCCCCCCCHHHHHHHhhhc----CCcEEEEcCCCC--CCCCCHHHHHHHHHHcCcEEEEeccccccccccCc
Q 016668 224 FESMPYRLDESTGLVDYDMLEKTAILF----RPKLIIAGASAY--PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASV 297 (385)
Q Consensus 224 ~~~i~~~~~~~~~~iD~d~le~~i~~~----~pklIi~~~s~~--~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~ 297 (385)
...++...+.+++.+|+++|++.++++ ++.+|++..+++ +...|+++|+++|+++|+++++|+||+.++...+.
T Consensus 180 ~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~ 259 (434)
T d2z67a1 180 MRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLE 259 (434)
T ss_dssp EEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred ceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccc
Confidence 666654445566789999999999652 355666665554 46778999999999999999999999765533221
Q ss_pred -ccCCCC-CCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHhhc
Q 016668 298 -VADPFK-YCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNA 343 (385)
Q Consensus 298 -~~~p~~-gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~~~ 343 (385)
...+.+ ++|++++|+||++.+|.| |+++.+++ ++.+++...
T Consensus 260 ~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~-----~~~~~~~~~ 303 (434)
T d2z67a1 260 KLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA-----EFIKEISLS 303 (434)
T ss_dssp HHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCH-----HHHHHHHTT
T ss_pred cccccccCCcceEEEcCccccccCCCccccccCcH-----HHHHHHHhh
Confidence 223334 899999999999988877 56666664 677777654
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.67 E-value=1.1e-16 Score=159.92 Aligned_cols=227 Identities=18% Similarity=0.166 Sum_probs=146.6
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccc
Q 016668 135 PGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPK 214 (385)
Q Consensus 135 p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~ 214 (385)
.|.++|+|++.+++||+ +++++||.+. .++++|||.||..++.+++++||+++..+..+..+..|+.-. .
T Consensus 66 ~gd~~y~~~~~~~~le~----~~a~l~g~~~-----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~-~ 135 (465)
T d1ax4a_ 66 TGDEAYAGSRNYYDLKD----KAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTT-A 135 (465)
T ss_dssp TCCCCSSSCHHHHHHHH----HHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHH-H
T ss_pred hhhhhhccChHHHHHHH----HHHHHHCCCE-----EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhh-H
Confidence 34556888998888886 5788999986 377899999999999999999888766655432222222100 0
Q ss_pred cccccCcceEEEEe-------ccccCCCCCCCHHHHHHHhhhcCC---cEEEEcCCCC---CCC---CCHHHHHHHHHHc
Q 016668 215 RRVSGTSIYFESMP-------YRLDESTGLVDYDMLEKTAILFRP---KLIIAGASAY---PRD---FDYPRMRQIADAV 278 (385)
Q Consensus 215 ~~~~~~g~~~~~i~-------~~~~~~~~~iD~d~le~~i~~~~p---klIi~~~s~~---~~~---~dl~~I~~ia~~~ 278 (385)
..+...|....... ...++.++.+|++++++++++..+ .++++..+++ +.. .++++|+++|++|
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~ 215 (465)
T d1ax4a_ 136 AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH 215 (465)
T ss_dssp HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHc
Confidence 11223343222211 122344678999999999975433 3455544432 222 3578999999999
Q ss_pred CcEEEEeccccccccccCc--c------------cCCCCCCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHH----
Q 016668 279 GALLMMDMAHISGLVAASV--V------------ADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAI---- 340 (385)
Q Consensus 279 ga~livD~ah~~Gli~~g~--~------------~~p~~gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i---- 340 (385)
|++|++|++|..|....+. . +..+..+|++++|+||.+.+|.+|+++++++. .+....
T Consensus 216 g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~----~~~~~~~~~~ 291 (465)
T d1ax4a_ 216 GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNE----EIFTLARQRC 291 (465)
T ss_dssp TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCH----HHHHHHHHHH
T ss_pred CCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchH----HHHHhhhccc
Confidence 9999999999765432110 0 01112478999999999999999999998762 222222
Q ss_pred hhccCCCccCCChHHHHHHHHHHHHHhhCchHHHH
Q 016668 341 NNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 375 (385)
Q Consensus 341 ~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y 375 (385)
.........++.....+++++..+.+...+++.++
T Consensus 292 ~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~ 326 (465)
T d1ax4a_ 292 VPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHY 326 (465)
T ss_dssp HHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHH
Confidence 12223334556667777888888888777766433
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.67 E-value=9.7e-16 Score=150.41 Aligned_cols=169 Identities=19% Similarity=0.145 Sum_probs=127.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcc
Q 016668 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (385)
Q Consensus 132 ~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (385)
.+|.+.|. ||++.+.||+ +++++.|.+. .+.+.||+.|+.+++.+++++||+|++.+.-||+.... +
T Consensus 57 ~~~~Y~R~--~nPt~~~LE~----~la~LEgg~~-----a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l--~ 123 (398)
T d1qgna_ 57 ASFEYGRY--GNPTTVVLEE----KISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIF--I 123 (398)
T ss_dssp CCCCBGGG--CCHHHHHHHH----HHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHH--H
T ss_pred CCceecCC--CChHHHHHHH----HHHHHhCCce-----EEEecCcchHHHHHHhhcccccccccccccccchhhhh--h
Confidence 46777665 8999998887 6888999876 36789999999999999999999999998877664221 0
Q ss_pred ccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccc
Q 016668 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHI 289 (385)
Q Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~ 289 (385)
.......|..+. .+ + ..|.++.++.+...++|+|++..+.|| ...|+++|+++|+++|+++++|++.+
T Consensus 124 --~~~~~~~gi~~~--~~--~----~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~a 193 (398)
T d1qgna_ 124 --ETILPKMGITAT--VI--D----PADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFA 193 (398)
T ss_dssp --HHTGGGGTCEEE--EE--C----SSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred --cccccccccccc--cc--c----ccchhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceee
Confidence 012234454333 22 1 134555555444457899999999888 57899999999999999999999864
Q ss_pred ccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeC
Q 016668 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (385)
Q Consensus 290 ~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~ 328 (385)
.. ....|++ |+||++.|+.|.+.|.. ||.+..++
T Consensus 194 tP-----~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~ 231 (398)
T d1qgna_ 194 TP-----LNQKALALGADLVLHSATKFLGGHNDVLAGCISGPL 231 (398)
T ss_dssp CT-----TTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH
T ss_pred cc-----ccCCchhhCCCEEEEechhhcCcccceeehhhcchh
Confidence 43 3457888 89999999999998863 57766655
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.5e-15 Score=151.85 Aligned_cols=276 Identities=10% Similarity=0.043 Sum_probs=173.2
Q ss_pred ccCCh-HHHHHHHHHHHHhh-hcccccc-CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016668 84 GEADP-EVCEIITKEKERQF-KSLELIA-SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (385)
Q Consensus 84 ~~~dp-~~~~~i~~e~~~~~-~~l~Lia-sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~l 160 (385)
+..++ .++++|.+|...-- -.++|.. ..++++|.+.+.+...+...+.. +.-.+...++|+.+.+|++++
T Consensus 33 ~~~~~~~~~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~N~~~-------~~~~P~~~~lE~~~v~~la~L 105 (450)
T d1pmma_ 33 HEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWID-------KEEYPQSAAIDLRCVNMVADL 105 (450)
T ss_dssp SCCCHHHHHHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTCBTTC-------TTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHhcCCCC-------cccCccHHHHHHHHHHHHHHH
Confidence 44555 47888887653221 1234431 25677899999988776544321 112255668999999999999
Q ss_pred cCCCCCCC--cceeecCCcHHHHHHHHHHhc-----------cCCCE-EeecCCCCCccccCCccccccccccCcceEEE
Q 016668 161 FNLDENKW--GVNVQPLSGSPANFEVYTAIL-----------KPHDR-IMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES 226 (385)
Q Consensus 161 fg~~~~~~--~~~V~~~sGs~A~~~a~~all-----------~pGD~-Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~ 226 (385)
||++.... ..-+.+++||+||+.++.+.- ++++. ++++.. .|.+. .+.+...|.++..
T Consensus 106 ~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~---~H~s~-----~Kaa~~~gi~~~~ 177 (450)
T d1pmma_ 106 WHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP---VQICW-----HKFARYWDVELRE 177 (450)
T ss_dssp TTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESS---CCHHH-----HHHHHHTTCEEEE
T ss_pred hCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecc---cHHHH-----HHHHHHcCCCceE
Confidence 99864221 124567788889998876641 23343 444432 34332 1455777876665
Q ss_pred EeccccCCCCCCCHHHHHHHhhhcCCcEEEEc--CCCCCCCCCHHHHHHHH------HHcCcEEEEeccccccccc-c-C
Q 016668 227 MPYRLDESTGLVDYDMLEKTAILFRPKLIIAG--ASAYPRDFDYPRMRQIA------DAVGALLMMDMAHISGLVA-A-S 296 (385)
Q Consensus 227 i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~--~s~~~~~~dl~~I~~ia------~~~ga~livD~ah~~Gli~-~-g 296 (385)
++ ++++++.+|+++|++++++ ++.+|++. .+.++...|+++|.++| +++|+|+++|+|++.+... . .
T Consensus 178 v~--~~~~~~~~d~~~L~~~i~~-~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~ 254 (450)
T d1pmma_ 178 IP--MRPGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP 254 (450)
T ss_dssp CC--CBTTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT
T ss_pred ee--ecCCCCcCcHHHHHHHhhh-CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeech
Confidence 55 6666789999999999975 56666643 34456677888777774 5689999999998644321 1 1
Q ss_pred cccCC--CCCCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHH-Hh-------h-ccCCCccCCChHHHHHHHHHHH
Q 016668 297 VVADP--FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESA-IN-------N-AVFPGLQGGPHNHTIGGLAVCL 364 (385)
Q Consensus 297 ~~~~p--~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~-i~-------~-~~fp~~qg~p~~~~iaala~Al 364 (385)
..... ++++|.+++|+||++.+|.| |+++++++. +... .. . .....+.++-....+.++-.++
T Consensus 255 ~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~-----~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l 329 (450)
T d1pmma_ 255 DIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE-----ALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEF 329 (450)
T ss_dssp TCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGG-----GSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHH
T ss_pred hhhhhhcccceeEeecChhhccCCCCCeeEEEecChh-----hhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHH
Confidence 11112 23799999999999988977 888888752 1111 00 0 0112233333344555556667
Q ss_pred HHhhCchHHHHHHHHhcc
Q 016668 365 KHAQSPEFKVYQNKSACK 382 (385)
Q Consensus 365 ~e~~~~~~~~y~~~v~~~ 382 (385)
+..-..+|+++.++.+++
T Consensus 330 ~~~G~~G~~~~~~~~~~l 347 (450)
T d1pmma_ 330 LRLGREGYTKVQNASYQV 347 (450)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 767667777777776654
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.66 E-value=1.9e-15 Score=146.41 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCCCEEeecCCCCCccccCCccccccccccCcc
Q 016668 144 EYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSI 222 (385)
Q Consensus 144 ~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~ 222 (385)
+.++++|+ .++++||.++ .+.+.|||.|+.+++.++ +++||+|++++.++.+.. ..+...|.
T Consensus 21 ~~~~~fE~----~~~~~~~~~~-----~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~--------~~~~~~g~ 83 (374)
T d1o69a_ 21 EFVNRFEQ----SVKDYSKSEN-----ALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV--------APICYLKA 83 (374)
T ss_dssp HHHHHHHH----HHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT--------HHHHHTTC
T ss_pred HHHHHHHH----HHHHHHCcCe-----EEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhH--------HHHhhccc
Confidence 56778886 5788999987 478899999999999999 999999999886554322 23456676
Q ss_pred eEEEEeccccCCCCCCCHHHHH--HHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccC
Q 016668 223 YFESMPYRLDESTGLVDYDMLE--KTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (385)
Q Consensus 223 ~~~~i~~~~~~~~~~iD~d~le--~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~ 300 (385)
.++.++++++....+.+..+ .... .++++|++. ..++...|+++|.++|+++|+.||.|+||+.|....|..
T Consensus 84 --~pv~~Di~~~~~~~~~~~~~~~~~~~-~~~~aii~~-~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~-- 157 (374)
T d1o69a_ 84 --KPVFIDCDETYNIDVDLLKLAIKECE-KKPKALILT-HLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKA-- 157 (374)
T ss_dssp --EEEEECBCTTSSBCHHHHHHHHHHCS-SCCCEEEEE-CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE--
T ss_pred --eeEecccccccccccccccccchhcc-ccccccccc-ccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCee--
Confidence 45566676544444544433 3332 357777664 346778899999999999999999999999887655432
Q ss_pred CCC-CCcEEEECCC--ccCccccEEEEEEeCCCCchhHHHHHHh
Q 016668 301 PFK-YCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 301 p~~-gaDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
+. ..|+.++|+| |.+....||+++++++ ++.+++.
T Consensus 158 -~G~~gd~~~fSf~~~K~l~tgeGG~i~tnn~-----~~~~~~~ 195 (374)
T d1o69a_ 158 -LGTFGEFGVYSYNGNKIITTSGGGMLIGKNK-----EKIEKAR 195 (374)
T ss_dssp -TTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHH
T ss_pred -cCCCCceEEEeccCccccccccceeehhhhH-----HHHHhhc
Confidence 22 4699999998 8887778999999887 6666553
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=2.1e-16 Score=153.87 Aligned_cols=203 Identities=18% Similarity=0.124 Sum_probs=137.6
Q ss_pred ccccc--CCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHH
Q 016668 105 LELIA--SENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PAN 181 (385)
Q Consensus 105 l~Lia--sen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~ 181 (385)
|+|-. ++..+|+.+++++.+.. ....+|+. ..|.+ +|++.+++++.+.+|.+.+ + -+|..++|+ +++
T Consensus 31 i~l~~G~p~~~~p~~~~~al~~~~--~~~~~Y~~---~~G~~---~LR~aia~~~~~~~g~~~~-~-~~I~it~G~~~~l 100 (389)
T d2gb3a1 31 HHLNIGQPDLKTPEVFFERIYENK--PEVVYYSH---SAGIW---ELREAFASYYKRRQRVDVK-P-ENVLVTNGGSEAI 100 (389)
T ss_dssp EECSSCCCCSCCCTHHHHHHHHTC--CSSCCCCC---TTCCH---HHHHHHHHHHHHTSCCCCC-G-GGEEEESHHHHHH
T ss_pred EECCCCCCCCCCCHHHHHHHHhcC--CCCCCCCC---CcCCH---HHHHHHHHHHHHhcCCCcc-c-ceEEecccccccc
Confidence 45543 33446888999987543 23445665 23555 7888888899998887642 2 256667766 599
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.+++++||.|++.+|.+..+.. .....|.....++ .+.+.+..+.+.+.....+ ++++++++.++
T Consensus 101 ~~~~~~l~~~gd~V~i~~P~y~~~~~--------~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~l~nP~ 169 (389)
T d2gb3a1 101 LFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGVKLIPVT--RRMEEGFAIPQNLESFINE-RTKGIVLSNPC 169 (389)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTCEEEEEE--CCGGGTSCCCTTGGGGCCT-TEEEEEEESSC
T ss_pred cccccccccCCCeEEEeCCCCccccc--------cccccCccccccc--cccccccchhhhhhhhccc-CccEEEeCCCC
Confidence 99999999999999999987654321 2334555433343 4333444554555555543 67899888888
Q ss_pred CCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC---CCcEEEECCCccC--ccccEEEEEEeCC
Q 016668 262 YPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 262 ~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~---gaDiv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
||+ .. ++++|.++|+++|+++|.|+++ ..+...+..++... .-.+++.|++|.+ +|+|.|+++++++
T Consensus 170 NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y-~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~ 246 (389)
T d2gb3a1 170 NPTGVVYGKDEMRYLVEIAERHGLFLIVDEVY-SEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE 246 (389)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred ccccccchHHHHHHHHhhcccCCEEEEEeccc-cccccccccccccccccccccccccccccccCcccceeeeeccch
Confidence 873 23 4789999999999999999987 55665554333332 2236788998886 7889999999774
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=2.8e-16 Score=155.63 Aligned_cols=199 Identities=7% Similarity=-0.037 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHh---ccCCCEEeecCCCCCccccCCccccccccccCc
Q 016668 146 IDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAI---LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS 221 (385)
Q Consensus 146 ~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~al---l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g 221 (385)
..++|....+++++++|.+... ..+.+++||. ++.+++.++ ..++|.|+++...|.+.. +.+...|
T Consensus 92 ~~~le~~~~~~~~~l~g~~~~~--~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~--------~a~~~~g 161 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVHSVA--SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF--------KSMVTAG 161 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH--------HHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCccc--CccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHH--------HHHHHcC
Confidence 4578888889999999998642 2344556664 555555554 457789998876543221 3556778
Q ss_pred ceEEEEeccccCCCCCCCHHHHHHHhhhc---CCcEEEEcCCC--CCCCCCHHHHHHHHHHcCcEEEEeccccccccccC
Q 016668 222 IYFESMPYRLDESTGLVDYDMLEKTAILF---RPKLIIAGASA--YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAAS 296 (385)
Q Consensus 222 ~~~~~i~~~~~~~~~~iD~d~le~~i~~~---~pklIi~~~s~--~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g 296 (385)
.....+....+.+++.+|+++|++.+++. ++.+|++..++ ++...|+++|+++|+++|+++++|+||+.++.+..
T Consensus 162 ~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~ 241 (445)
T d3bc8a1 162 FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCM 241 (445)
T ss_dssp CEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHH
T ss_pred CeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhcc
Confidence 76666654344467899999999998653 34566665544 46778999999999999999999999976654321
Q ss_pred cc-cCC--CCCCcEEEECCCccCccccE-EEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHH
Q 016668 297 VV-ADP--FKYCDVVTTTTHKSLRGPRG-GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGG 359 (385)
Q Consensus 297 ~~-~~p--~~gaDiv~~S~hK~l~Gprg-G~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaa 359 (385)
.. +.. +.++|++++|+||++.+|.| |+++.++. ++.+++.........+++.....++
T Consensus 242 ~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (445)
T d3bc8a1 242 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE-----PFIQDISKMYPGRASASPSLDVLIT 303 (445)
T ss_dssp HHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH-----HHHHHHHHHSCSCBCSHHHHHHHHH
T ss_pred ccchhccCcCCcceEEecCccccccCCCCceeeeCCh-----HHHHHHHHHHhhcccCcchHHHHHH
Confidence 11 111 23689999999999988876 56666664 6666666543333333344444443
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.64 E-value=1.1e-15 Score=149.40 Aligned_cols=239 Identities=18% Similarity=0.119 Sum_probs=143.3
Q ss_pred CcchhhhhcccCChHHHHHHHHHHHHhhhccccc----cCCCCCcHHHHHHHhhHhhccC--CCCCCCCCCCCCcHHHHH
Q 016668 75 GSSFVDYSLGEADPEVCEIITKEKERQFKSLELI----ASENFTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDE 148 (385)
Q Consensus 75 ~~~~~~~~l~~~dp~~~~~i~~e~~~~~~~l~Li----asen~~s~~V~~al~s~l~~~y--~~g~p~~r~~~G~~~~~~ 148 (385)
++.+++++.+++-+.....+.+ .....+-|+|- +++.++.+.+.+++...+...- ..+|+. ..|.+ +
T Consensus 3 ~~~~~~~~~~~~~~s~ire~~~-~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~ 75 (403)
T d1wsta1 3 FDSFFSEKAMLMKASEVRELLK-LVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGT---TKGFT---P 75 (403)
T ss_dssp GGGGCCHHHHHCCCHHHHHHHH-HHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCC---SSCCH---H
T ss_pred HHHHHHHHHhcCCCcHHHHHHH-HhCCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCC---CcCCH---H
Confidence 3456666666665533321111 01112334543 1233445566666666543221 113444 23555 7
Q ss_pred HHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEE
Q 016668 149 LETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM 227 (385)
Q Consensus 149 le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i 227 (385)
+++..++++.+.+|.+.+. .+|.+++|+ +++..++.++++|||+|++.+|.+..+.. .+...|..+..+
T Consensus 76 lR~aia~~l~~~~g~~~~~--~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~--------~~~~~g~~~~~v 145 (403)
T d1wsta1 76 LRLALARWMEKRYDIPMSK--VEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQ--------AFKYYDPEFISI 145 (403)
T ss_dssp HHHHHHHHHHHHHCCCCTT--CEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCh--HHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhH--------HHhhccccceeE
Confidence 8888889999988876422 256677766 59999999999999999999987655432 234566655555
Q ss_pred eccccCCCCCCCHHHHH----HHhhhc--CCcEEEEcCCCCC--CCCC---HHHHHHHHHHcCcEEEEeccccccccccC
Q 016668 228 PYRLDESTGLVDYDMLE----KTAILF--RPKLIIAGASAYP--RDFD---YPRMRQIADAVGALLMMDMAHISGLVAAS 296 (385)
Q Consensus 228 ~~~~~~~~~~iD~d~le----~~i~~~--~pklIi~~~s~~~--~~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g 296 (385)
+ .+++. .|...+. +..... ...++++..++|| ...+ +++|.++|+++|++||+|++| ..+...+
T Consensus 146 ~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y-~~l~~~~ 220 (403)
T d1wsta1 146 P--LDDKG--MRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPY-SELRYSG 220 (403)
T ss_dssp E--EETTE--ECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT-TTCBCSS
T ss_pred e--ecccC--CccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccch-hheecCC
Confidence 4 43222 2222222 222121 2234555666776 3333 678889999999999999997 5565555
Q ss_pred cccCCCC-----CCcEEEECCCccC-ccccEEEEEEeCCCCchhHHHHHHh
Q 016668 297 VVADPFK-----YCDVVTTTTHKSL-RGPRGGMIFFKKDPVLGVELESAIN 341 (385)
Q Consensus 297 ~~~~p~~-----gaDiv~~S~hK~l-~GprgG~I~~~~~~~~~~~~~~~i~ 341 (385)
....++. +--+++.|++|++ +|.|.|++++++ ++.+.+.
T Consensus 221 ~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~------~~i~~~~ 265 (403)
T d1wsta1 221 EPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHP------HLIRKME 265 (403)
T ss_dssp CCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECH------HHHHHHH
T ss_pred CCCCcccccCCCCcEEEEccccceecCcccccccccch------HHHHHHH
Confidence 4333332 2237889999997 678999999987 4555444
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=2.1e-15 Score=147.81 Aligned_cols=173 Identities=17% Similarity=0.106 Sum_probs=130.0
Q ss_pred ccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCcccc
Q 016668 128 NKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLS 207 (385)
Q Consensus 128 ~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s 207 (385)
++...+|-+.|. ||++.+.+|+ +++++-|.+. .+.+.||+.|+.+++.+++++||+|++.+.-||+...
T Consensus 44 ~~~~~~~~Y~R~--~nPt~~~le~----~la~LEg~~~-----a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~ 112 (391)
T d1cl1a_ 44 NRANGELFYGRR--GTLTHFSLQQ----AMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQD 112 (391)
T ss_dssp TTTTTCCCCTTT--CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHH
T ss_pred CCccCceEeECC--CChhHHHHHH----HHHHHhCCcc-----EEEeccccceeeehhhcccCCCCeEEEecccccchhh
Confidence 333333556664 8999998887 6888999876 3678899999999999999999999999988876422
Q ss_pred CCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHc--CcEEE
Q 016668 208 HGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAV--GALLM 283 (385)
Q Consensus 208 ~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~--ga~li 283 (385)
.. .+.+...|..+. .+ | ..|.+++++.+++ ++|+|++..+.+| ...|+++|+++|+++ |++++
T Consensus 113 --l~--~~~l~~~Gi~~~--~~--d----~~d~~~~~~~i~~-~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~v 179 (391)
T d1cl1a_ 113 --FC--SKILSKLGVTTS--WF--D----PLIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIM 179 (391)
T ss_dssp --HH--HHTGGGGTCEEE--EE--C----TTCGGGGGGTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEE
T ss_pred --hh--hhcccccccccc--cc--c----Ccccccccccccc-ccceeeecccCcccccccccHHHHHHHHhccCCcEEE
Confidence 11 012234454333 32 2 1366788887764 7899999988887 578999999999775 99999
Q ss_pred EeccccccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCC
Q 016668 284 MDMAHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (385)
Q Consensus 284 vD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~ 329 (385)
+|++.+.. ....|++ |+|+++.|+.|++.|.. ||.++.+++
T Consensus 180 VDnT~atP-----~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~ 224 (391)
T d1cl1a_ 180 IDNTWAAG-----VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR 224 (391)
T ss_dssp EECTTTTT-----TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT
T ss_pred Eeccccch-----hhhcccccccceEEeecchhccccccccccceecccc
Confidence 99987543 3457888 89999999999998864 588877774
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.63 E-value=1.5e-15 Score=149.28 Aligned_cols=231 Identities=14% Similarity=0.087 Sum_probs=144.0
Q ss_pred cccCCh-HHHHHHHHHHHHhh-hccccccC----C---CCCcHHHHHHHhhHhhccC-CCCCCCCCCCCCcHHHHHHHHH
Q 016668 83 LGEADP-EVCEIITKEKERQF-KSLELIAS----E---NFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETL 152 (385)
Q Consensus 83 l~~~dp-~~~~~i~~e~~~~~-~~l~Lias----e---n~~s~~V~~al~s~l~~~y-~~g~p~~r~~~G~~~~~~le~~ 152 (385)
+...+| .+|.++++-+.... +-|+|--+ + .+..+.|++++.....+.. .++|+. ..|.+ +|+++
T Consensus 9 ~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p---~~G~p---~lrea 82 (412)
T d1ajsa_ 9 VPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLP---ILGLA---EFRTC 82 (412)
T ss_dssp CCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCC---TTCCH---HHHHH
T ss_pred CCcCCCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCC---CCCCH---HHHHH
Confidence 666655 67887766543222 34666533 2 2346889998765544332 345655 35766 78877
Q ss_pred HHHHHHHHcCCC--CCCCcceeecCCcHHHHHHHHH-------HhccCCCEEeecCCCCCccccCCccccccccccCcce
Q 016668 153 CQKRALAAFNLD--ENKWGVNVQPLSGSPANFEVYT-------AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY 223 (385)
Q Consensus 153 ~~~~la~lfg~~--~~~~~~~V~~~sGs~A~~~a~~-------all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~ 223 (385)
+++++.+..+.+ .+ ..+.+++.+++.++..+.. ++++|||+|++++|.+++|.. .+...|..
T Consensus 83 ia~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~--------~~~~~G~~ 153 (412)
T d1ajsa_ 83 ASRLALGDDSPALQEK-RVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG--------VFTTAGFK 153 (412)
T ss_dssp HHHHHHCTTCHHHHTT-CEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH--------HHHHTTCS
T ss_pred HHHHHhccCCcccccc-cceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHH--------HHHHcCCe
Confidence 777666555432 22 1133444445444444333 337999999999997766532 34556654
Q ss_pred E-EEEeccccCCCCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEecccccccccc
Q 016668 224 F-ESMPYRLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAA 295 (385)
Q Consensus 224 ~-~~i~~~~~~~~~~iD~d~le~~i~~--~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~ 295 (385)
. .+.++ .+++.+.+|++.+++.+.. .++++++++.++||+ .+ .+++|+++|+++|+++++|++| .++.+.
T Consensus 154 ~v~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y-~~l~~~ 231 (412)
T d1ajsa_ 154 DIRSYRY-WDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAY-QGFASG 231 (412)
T ss_dssp CEEEEEC-EETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTTTTS
T ss_pred EEEeecc-cccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhh-hhhhcC
Confidence 3 22332 2334557899888776543 356788888888873 44 3789999999999999999997 566654
Q ss_pred CcccCCC------CC--CcEEEECCCccC--ccccEEEEEEeCCC
Q 016668 296 SVVADPF------KY--CDVVTTTTHKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 296 g~~~~p~------~g--aDiv~~S~hK~l--~GprgG~I~~~~~~ 330 (385)
+....++ +. ..+++.|++|++ +|+|.|++++....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~ 276 (412)
T d1ajsa_ 232 NLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKE 276 (412)
T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSS
T ss_pred CcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhH
Confidence 4211111 12 236778888885 78999999998763
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.62 E-value=2.2e-15 Score=149.03 Aligned_cols=185 Identities=14% Similarity=0.060 Sum_probs=124.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCC-CCCcceeecCCc-HHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccc
Q 016668 141 GGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSG-SPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS 218 (385)
Q Consensus 141 ~G~~~~~~le~~~~~~la~lfg~~~-~~~~~~V~~~sG-s~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (385)
.|.+ +|++..++++.+.+|..- -++ .+|..++| ++|+..++.++++|||+|++++|.|.++.. .+.
T Consensus 83 ~G~~---~LR~aiA~~l~~~~~~~~~~~~-e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~ 150 (428)
T d1iaya_ 83 HGLP---EFRKAIAKFMEKTRGGRVRFDP-ERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR--------DLR 150 (428)
T ss_dssp TCCH---HHHHHHHHHHHHHTTTCSCCCT-TSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH--------HTT
T ss_pred cchH---HHHHHHHHHHHHHhCCCCCCCh-hhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHH--------HHH
Confidence 3555 788888889999987431 011 13555665 569999999999999999999997765432 122
Q ss_pred -cCcceEEEEeccccCC-CCCCCHHHHHHHhh-----hcCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEec
Q 016668 219 -GTSIYFESMPYRLDES-TGLVDYDMLEKTAI-----LFRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDM 286 (385)
Q Consensus 219 -~~g~~~~~i~~~~~~~-~~~iD~d~le~~i~-----~~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ 286 (385)
..|.. +++++.+++ ++.+|++++++.++ ..++++|+++.++||+ .. ++++|.++|+++|++||+|+
T Consensus 151 ~~~g~~--~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De 228 (428)
T d1iaya_ 151 WRTGVQ--LIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDE 228 (428)
T ss_dssp TTTCCE--EEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HhcCCe--EEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecc
Confidence 23554 444445533 45899998876542 1245678888787763 33 37889999999999999999
Q ss_pred cccccccccCcccCCC-----------CCCc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccC
Q 016668 287 AHISGLVAASVVADPF-----------KYCD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVF 345 (385)
Q Consensus 287 ah~~Gli~~g~~~~p~-----------~gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~f 345 (385)
+| ..+++.+..+.++ ...| +++.|++|++ +|.|.|++++.++ ++.+.+.....
T Consensus 229 ~Y-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~-----~l~~~~~~~~~ 296 (428)
T d1iaya_ 229 IY-AATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND-----DVVNCARKMSS 296 (428)
T ss_dssp TT-GGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH-----HHHHHHHHHHT
T ss_pred cc-cccccCcccccccccccchhhccccccceEEEEecCCCcccCCCccccccccccc-----chhhhhhhhhc
Confidence 97 4555443211111 1122 6789999986 7899999998765 56666655433
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1.8e-15 Score=147.82 Aligned_cols=232 Identities=16% Similarity=0.119 Sum_probs=140.2
Q ss_pred hcccCCh-HHHHHHHHHHHHhh-hccccccC-------CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHH
Q 016668 82 SLGEADP-EVCEIITKEKERQF-KSLELIAS-------ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETL 152 (385)
Q Consensus 82 ~l~~~dp-~~~~~i~~e~~~~~-~~l~Lias-------en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~ 152 (385)
++...|| .++.++++-++..+ +.|+|--+ ..++.+.|++|+...+.+...++|+. ..|.+ +|++.
T Consensus 4 ~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p---~~G~~---~lR~a 77 (396)
T d2q7wa1 4 NITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLG---IDGIP---EFGRC 77 (396)
T ss_dssp TCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC---TTCCH---HHHHH
T ss_pred ccccCCCChHHHHHHHHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC---CcCCH---HHHHH
Confidence 3455555 46776655444333 44777633 23456899999887766665556765 34666 78877
Q ss_pred HHHHHHHHcCCCCC-CCcceeecCCcHHH--HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEec
Q 016668 153 CQKRALAAFNLDEN-KWGVNVQPLSGSPA--NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPY 229 (385)
Q Consensus 153 ~~~~la~lfg~~~~-~~~~~V~~~sGs~A--~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~ 229 (385)
+++++.+..+.... +....+.+.+|+.+ +...+...+++||.|++++|.+.+|.. .+...|..+..+++
T Consensus 78 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~--------~~~~~g~~~~~~~~ 149 (396)
T d2q7wa1 78 TQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS--------VFNSAGLEVREYAY 149 (396)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH--------HHHHTTCEEEEEEC
T ss_pred HHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchH--------HHHHcCCeeEeccc
Confidence 77777766654221 11022333444433 333445558999999999997765533 34567776555554
Q ss_pred cccCCCCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccC-C
Q 016668 230 RLDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD-P 301 (385)
Q Consensus 230 ~~~~~~~~iD~d~le~~i~~--~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~-p 301 (385)
..+ +++..+.+++++.... .+++++++++++||+ .. .+++|.++|+++++++|+|++| .++.+++.... .
T Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y-~~l~~~~~~~~~~ 227 (396)
T d2q7wa1 150 YDA-ENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAY-QGFARGLEEDAEG 227 (396)
T ss_dssp EET-TTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTSSSCHHHHTHH
T ss_pred ccc-cccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccc-cccccCCccCchH
Confidence 332 3456777777766533 245677888888874 33 3778999999999999999997 67765542111 1
Q ss_pred C---C--C-CcEEEECCCccC--ccccEEEEEEeCC
Q 016668 302 F---K--Y-CDVVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 302 ~---~--g-aDiv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
+ . + -.+++.|++|++ +|+|.|++.+...
T Consensus 228 ~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~ 263 (396)
T d2q7wa1 228 LRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAA 263 (396)
T ss_dssp HHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECS
T ss_pred hhhhhhhcccccccccccccccccCCCccccccchh
Confidence 1 1 2 226778889985 7999999999886
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=2.6e-15 Score=148.29 Aligned_cols=171 Identities=19% Similarity=0.125 Sum_probs=127.7
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcc
Q 016668 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (385)
Q Consensus 132 ~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (385)
.||.+.|. ||++.+.||+ +++++-|.+. .+.+.||..|+.+++.+++++||+|++.+.-|||... .+
T Consensus 48 ~~~~YsR~--~nPT~~~LE~----~la~LE~~~~-----a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~--l~ 114 (421)
T d2ctza1 48 FGNIYSRI--MNPTVDVLEK----RLAALEGGKA-----ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFN--QF 114 (421)
T ss_dssp GGGSCBTT--BCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHH--HH
T ss_pred CCceecCC--CCHHHHHHHH----HHHHHhCCCe-----EEEecChHHHHHHHHHhhcccccceeecCCcCCchhH--HH
Confidence 35666664 8999999887 5888999876 3678999999999999999999999999988776422 11
Q ss_pred ccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHHcCcEEEEecccc
Q 016668 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADAVGALLMMDMAHI 289 (385)
Q Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~~ga~livD~ah~ 289 (385)
. ..+...|.. ...++. .-+.+..++.++. ++|+|++..+.|| ...|+++|+++||++|+++++|++.+
T Consensus 115 ~--~~~~~~gi~--~~~~d~-----~~~~~~~~~~~~~-~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a 184 (421)
T d2ctza1 115 K--VTLKRLGIE--VRFTSR-----EERPEEFLALTDE-KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFG 184 (421)
T ss_dssp H--THHHHTTCE--EEECCT-----TCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGG
T ss_pred H--HHHhhcccc--ceeccc-----ccCcchhccccCC-CceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccc
Confidence 0 122344543 333221 1234555665643 7899999999888 56899999999999999999999864
Q ss_pred ccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCC
Q 016668 290 SGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKD 329 (385)
Q Consensus 290 ~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~ 329 (385)
.. +....|++ |+||++.|+.|.+.|.. ||.|+.+++
T Consensus 185 ~t----P~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~ 224 (421)
T d2ctza1 185 MG----GYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGN 224 (421)
T ss_dssp GG----GTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSC
T ss_pred cc----ceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCc
Confidence 21 22346888 99999999999998864 588887765
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.62 E-value=2.6e-15 Score=148.64 Aligned_cols=174 Identities=17% Similarity=0.119 Sum_probs=120.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCC-CCCcceeecCCcH-HHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccc
Q 016668 141 GGNEYIDELETLCQKRALAAFNLDE-NKWGVNVQPLSGS-PANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVS 218 (385)
Q Consensus 141 ~G~~~~~~le~~~~~~la~lfg~~~-~~~~~~V~~~sGs-~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (385)
.|.+ +|++..++++.+.+|..- -++ -+|..++|+ +|+..++.++++|||+|++++|.|+++.. .+.
T Consensus 84 ~G~~---~LR~aiA~~l~~~~~~~~~~~p-e~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~--------~~~ 151 (431)
T d1m7ya_ 84 HGLP---AFKKAMVDFMAEIRGNKVTFDP-NHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLK 151 (431)
T ss_dssp TCCH---HHHHHHHHHHHHHTTTSSCCCG-GGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTT
T ss_pred cCcH---HHHHHHHHHHHHHhCCCCCCCc-ceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHH
Confidence 3555 788888889999987321 011 256666765 69999999999999999999987755432 122
Q ss_pred -cCcceEEEEeccccCCC-CCCCHHHHHHHhhh-----cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEec
Q 016668 219 -GTSIYFESMPYRLDEST-GLVDYDMLEKTAIL-----FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDM 286 (385)
Q Consensus 219 -~~g~~~~~i~~~~~~~~-~~iD~d~le~~i~~-----~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ 286 (385)
..|. +.+++++++++ +.+|++.+++.+.+ .++++|+++.++||+ .. ++++|.++|+++|++||+|+
T Consensus 152 ~~~g~--~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De 229 (431)
T d1m7ya_ 152 WRTGV--EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDE 229 (431)
T ss_dssp TTTCC--EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HhcCc--eeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecc
Confidence 2344 45555555444 47999999877643 245678888888773 33 47889999999999999999
Q ss_pred cccccccccCc-ccCCC-----------C-CCc--EEEECCCccC--ccccEEEEEEeCC
Q 016668 287 AHISGLVAASV-VADPF-----------K-YCD--VVTTTTHKSL--RGPRGGMIFFKKD 329 (385)
Q Consensus 287 ah~~Gli~~g~-~~~p~-----------~-gaD--iv~~S~hK~l--~GprgG~I~~~~~ 329 (385)
+| ..+.+.+. +.+.. . ..+ +++.|++|.+ +|.|.|+++++++
T Consensus 230 ~Y-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~ 288 (431)
T d1m7ya_ 230 IY-SGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDD 288 (431)
T ss_dssp TT-GGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCH
T ss_pred cc-cccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchh
Confidence 97 44554332 11110 0 112 6789999997 6889999999874
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.61 E-value=1e-14 Score=143.00 Aligned_cols=168 Identities=21% Similarity=0.242 Sum_probs=128.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCcc
Q 016668 132 EGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFM 211 (385)
Q Consensus 132 ~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~ 211 (385)
.||-+.|. ||++.+.||+ +++++.|.+. .+.+.||+.|+..++.+++++||+|++.+.-||+... .+
T Consensus 49 ~~~~YsR~--~nPT~~~le~----~la~LEg~~~-----a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~--~~ 115 (394)
T d1e5ea_ 49 SGYIYTRL--GNPTVSNLEG----KIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHA--LF 115 (394)
T ss_dssp CSCCBTTT--CCHHHHHHHH----HHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHH--HH
T ss_pred CCceecCC--CCHHHHHHHH----HHHHHhCCcc-----eeeeccchHHHHHHHHhhcccccccccccceeehhhH--hH
Confidence 35666665 8999999887 5888999886 3678899999999999999999999999877766422 11
Q ss_pred ccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHHH-cCcEEEEeccc
Q 016668 212 TPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIADA-VGALLMMDMAH 288 (385)
Q Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~~-~ga~livD~ah 288 (385)
. ......|..+..+. .-|.+++++.+++ ++|+|++..+.+| ...|++++.+++++ +|+++++|++.
T Consensus 116 ~--~~~~~~gi~~~~~d--------~~d~~~~~~~i~~-~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~ 184 (394)
T d1e5ea_ 116 E--HALTKFGIQVDFIN--------TAIPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTF 184 (394)
T ss_dssp H--THHHHTTCEEEEEC--------TTSTTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTT
T ss_pred H--HHhhccceeeeccC--------CCCHHHHHHhhcc-cccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcc
Confidence 0 12334555443322 2366789998865 7899999988887 46799999887764 68999999986
Q ss_pred cccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeC
Q 016668 289 ISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKK 328 (385)
Q Consensus 289 ~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~ 328 (385)
+.. ....|++ |+||++.|+.|++.|.. +|.+++++
T Consensus 185 atP-----~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~ 223 (394)
T d1e5ea_ 185 CSP-----MITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKA 223 (394)
T ss_dssp TCT-----TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred cCc-----ccCCchhcCCCEEEechhhhcCCCcccccccccchh
Confidence 443 3457888 89999999999998864 58888877
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=2.9e-15 Score=147.35 Aligned_cols=219 Identities=18% Similarity=0.135 Sum_probs=140.2
Q ss_pred CCCcHHHHHHHhhHhhccC--CCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHh
Q 016668 112 NFTSRAVMEAVGSCLTNKY--SEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI 188 (385)
Q Consensus 112 n~~s~~V~~al~s~l~~~y--~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~al 188 (385)
.++.+.+.+++...+.... ..+|+. ..|.+ +|++..++++.+.+|.+..+. -+|.+++|+ +|+..++.++
T Consensus 52 ~~P~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~---~LR~aia~~~~~~~g~~~~~~-~~I~it~G~~~al~~~~~~~ 124 (420)
T d1vp4a_ 52 TFPRKELAEIAKEIIEKEYHYTLQYST---TEGDP---VLKQQILKLLERMYGITGLDE-DNLIFTVGSQQALDLIGKLF 124 (420)
T ss_dssp GSCHHHHHHHHHHHHHHSHHHHTSCCC---TTCCH---HHHHHHHHHHHHHHCCCSCCG-GGEEEEEHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCccccCCCC---CcCCH---HHHHHHHHHHHHHhCCCCCCH-HHeEeccchhhhHHHHHHhh
Confidence 3445555666555443221 123544 24665 788888889999998763122 356677776 5999999999
Q ss_pred ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh-------cCCc-EEEEcCC
Q 016668 189 LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL-------FRPK-LIIAGAS 260 (385)
Q Consensus 189 l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~-------~~pk-lIi~~~s 260 (385)
++|||+|++++|.+..+.. .+...|..+..++ .++ ..+|++.++....+ .+++ +++++.+
T Consensus 125 ~~~Gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p 192 (420)
T d1vp4a_ 125 LDDESYCVLDDPAYLGAIN--------AFRQYLANFVVVP--LED--DGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNF 192 (420)
T ss_dssp CCTTCEEEEEESCCHHHHH--------HHHTTTCEEEEEE--EET--TEECHHHHHHHHHHHHHTTCGGGEEEEEEECSS
T ss_pred hccccccccccccccchhH--------HHHHHhhhccccc--ccc--cccccchhhhhhhhhHHHhhccccceeeEecCC
Confidence 9999999999987654422 2345676555555 442 34777777654321 1233 4556677
Q ss_pred CCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC---CCc--EEEECCCccC-ccccEEEEEEeCC
Q 016668 261 AYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK---YCD--VVTTTTHKSL-RGPRGGMIFFKKD 329 (385)
Q Consensus 261 ~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~---gaD--iv~~S~hK~l-~GprgG~I~~~~~ 329 (385)
+||+ .. ++++|.++|+++++++|+|+++ ..+.+.+....+.. ..+ ++.+|++|++ +|+|.|++++++
T Consensus 193 ~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y-~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~~- 270 (420)
T d1vp4a_ 193 HNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPY-GALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSK- 270 (420)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSS-TTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCH-
T ss_pred CCccchhhhhhhhhhhhhhhhcccccccccchh-hhccccCcccccccccccccceeEEeccccccccccccccccccc-
Confidence 7774 22 4789999999999999999986 56665543322221 223 6778889985 889999999987
Q ss_pred CCchhHHHHHHhhccCCCccCCChHHH
Q 016668 330 PVLGVELESAINNAVFPGLQGGPHNHT 356 (385)
Q Consensus 330 ~~~~~~~~~~i~~~~fp~~qg~p~~~~ 356 (385)
++.+.+.+.......+.+...+
T Consensus 271 -----~~i~~l~~~~~~~~~~~~~~~q 292 (420)
T d1vp4a_ 271 -----EFIRKIVQAKQSADLCSPAITH 292 (420)
T ss_dssp -----HHHHHHHHHHHHHHSSCCHHHH
T ss_pred -----hhhhhhhhhhhhccccCchhhh
Confidence 5767665543333333444443
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.61 E-value=1.3e-14 Score=140.60 Aligned_cols=190 Identities=14% Similarity=0.115 Sum_probs=135.7
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh-ccCCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI-LKPHD 193 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al-l~pGD 193 (385)
.++-++++.+.+...+ +...+.++++|+ +++++||.++ .|.++|||.|+.+++.++ +++||
T Consensus 11 ~~~~~~~v~~~l~~~~---------~~~G~~v~~fE~----~~~~~~g~k~-----ai~~~Sgt~Al~~al~al~~~~~~ 72 (371)
T d2fnua1 11 DKEDKKAVLEVLNSKQ---------LTQGKRSLLFEE----ALCEFLGVKH-----ALVFNSATSALLTLYRNFSEFSAD 72 (371)
T ss_dssp CHHHHHHHHHHHTSSC---------CSSSHHHHHHHH----HHHHHHTCSE-----EEEESCHHHHHHHHHHHSSCCCTT
T ss_pred CHHHHHHHHHHHcCCC---------ccCCHHHHHHHH----HHHHHHCcCe-----EEEEecHHHHHHHHHHHhcccCCC
Confidence 4555666666664322 222366778886 5889999998 377899999999999998 66655
Q ss_pred --EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHH
Q 016668 194 --RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRM 271 (385)
Q Consensus 194 --~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I 271 (385)
+|+++..++.+.+ ..+...|. +++.+++++++ .++.+++++.+.. ++++|++. +.+|...|+++|
T Consensus 73 ~~eVi~p~~t~~a~~--------~ai~~~G~--~pv~vDi~~~~-~~~~~~~~~~~~~-~t~avi~v-h~~G~~~~~~~i 139 (371)
T d2fnua1 73 RNEIITTPISFVATA--------NMLLESGY--TPVFAGIKNDG-NIDELALEKLINE-RTKAIVSV-DYAGKSVEVESV 139 (371)
T ss_dssp SCEEEECSSSCTHHH--------HHHHHTTC--EEEECCBCTTS-SBCGGGSGGGCCT-TEEEEEEE-CGGGCCCCHHHH
T ss_pred CCeeecccccccccc--------eeeeccCc--ccccccccccc-cccchhhhhhccc-hhhccccc-cccccccccccc
Confidence 7999876443221 24456676 56666777655 4566778777754 67877653 457888899999
Q ss_pred HHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCC--ccCccccEEEEEEeCCCCchhHHHHHHhh
Q 016668 272 RQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH--KSLRGPRGGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 272 ~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~h--K~l~GprgG~I~~~~~~~~~~~~~~~i~~ 342 (385)
.++|+++|++||.|+||+.|....+.... ...|+.++|+| |.+.+..||+|+++++ ++.+++..
T Consensus 140 ~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G--~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~-----~~~~~~~~ 205 (371)
T d2fnua1 140 QKLCKKHSLSFLSDSSHALGSEYQNKKVG--GFALASVFSFHAIKPITTAEGGAVVTNDS-----ELHEKMKL 205 (371)
T ss_dssp HHHHHHHTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCSSCEEEEESCH-----HHHHHHHH
T ss_pred cccccccchhhccchhhccCceeccccCC--ccccccccccccccccccccceEEEeech-----hhhhhccc
Confidence 99999999999999999988654443211 14577777775 9898788999999987 67776654
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=1e-14 Score=142.02 Aligned_cols=231 Identities=16% Similarity=0.201 Sum_probs=148.4
Q ss_pred hcccCCh-HHHHHHHHHHHHhh-hccccccC-------CCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHH
Q 016668 82 SLGEADP-EVCEIITKEKERQF-KSLELIAS-------ENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETL 152 (385)
Q Consensus 82 ~l~~~dp-~~~~~i~~e~~~~~-~~l~Lias-------en~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~ 152 (385)
.|+..+| .+++++.+-+..-. +.|+|--+ ..++.|.|++|+...+.+...++|.. ..|.+ +|+++
T Consensus 4 ~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p---~~G~~---~lr~a 77 (394)
T d2ay1a_ 4 NLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAG---LSGEP---EFQKA 77 (394)
T ss_dssp GCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC---SSCCH---HHHHH
T ss_pred CCCCCCCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC---CCCCH---HHHHH
Confidence 3555554 47887766543222 44666533 23456899999887776655556665 34766 78877
Q ss_pred HHHHHHHHcCCCCCCCcceeecCCcHHH--HHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEecc
Q 016668 153 CQKRALAAFNLDENKWGVNVQPLSGSPA--NFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYR 230 (385)
Q Consensus 153 ~~~~la~lfg~~~~~~~~~V~~~sGs~A--~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~ 230 (385)
+.+++.+..+.... . ..+++++|+.+ +.+.+..+++|||.|++++|.++.|.. .+...|..+..+++.
T Consensus 78 ia~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~--------~~~~~g~~~v~~~~~ 147 (394)
T d2ay1a_ 78 MGELILGDGLKSET-T-ATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS--------IMNFMGLPVQTYRYF 147 (394)
T ss_dssp HHHHHHGGGCCGGG-E-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH--------HHHHHTCCEEEEECE
T ss_pred HHHHHhcccccccc-c-cceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHH--------HHHHcCCEEEEeccc
Confidence 77777665554431 1 34556666544 445556678999999999987655432 345667655555543
Q ss_pred ccCCCCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCC-
Q 016668 231 LDESTGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPF- 302 (385)
Q Consensus 231 ~~~~~~~iD~d~le~~i~~--~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~- 302 (385)
- ++++..+.+++++.... .++++++++.++||+ .. .+++|.++|++++++++.|++| .++.+++....++
T Consensus 148 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y-~~l~~~~~~~~~~~ 225 (394)
T d2ay1a_ 148 D-AETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAY-QGFGDGLEEDAAGT 225 (394)
T ss_dssp E-TTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECC-TTSSSCHHHHHHHH
T ss_pred c-hhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccc-hhhcccccccchhh
Confidence 2 23456677777666543 234566777788873 33 3788999999999999999996 6776554321111
Q ss_pred -----CCCc-EEEECCCccC--ccccEEEEEEeCCC
Q 016668 303 -----KYCD-VVTTTTHKSL--RGPRGGMIFFKKDP 330 (385)
Q Consensus 303 -----~gaD-iv~~S~hK~l--~GprgG~I~~~~~~ 330 (385)
.... +++.|++|++ +|+|.|++.+....
T Consensus 226 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~ 261 (394)
T d2ay1a_ 226 RLIASRIPEVLIAASCSKNFGIYRERTGCLLALCAD 261 (394)
T ss_dssp HHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSS
T ss_pred hhhhhhcccccccccccccccCCcccccchhhchhH
Confidence 1223 5677888875 78999999998863
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=9.6e-15 Score=143.14 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=127.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccc
Q 016668 133 GLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMT 212 (385)
Q Consensus 133 g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~ 212 (385)
+|-+.|. |+++.+.+|+ +++++.|.+. .+.+.||+.|+. ++..++++||+|++.+..||+... .+.
T Consensus 46 ~y~YsR~--gnPT~~~lE~----~la~LE~~~~-----a~~~sSGmaAi~-~~l~~l~~gd~iv~~~~~yg~t~~--~~~ 111 (393)
T d1n8pa_ 46 TYEYSRS--QNPNRENLER----AVAALENAQY-----GLAFSSGSATTA-TILQSLPQGSHAVSIGDVYGGTHR--YFT 111 (393)
T ss_dssp SCCBTTT--CCHHHHHHHH----HHHHHTTCSE-----EEEESCHHHHHH-HHHHTSCSSCEEEEESSCCHHHHH--HHH
T ss_pred CeeeeCC--CChHHHHHHH----HHHHHhCCce-----EEEecCchhHHH-hhhhcccCCCeeeeeeeecccchh--hhh
Confidence 3555554 8999998887 5888999876 367899998886 456778999999999887765321 110
Q ss_pred cccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHHH----HcCcEEEEec
Q 016668 213 PKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIAD----AVGALLMMDM 286 (385)
Q Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia~----~~ga~livD~ 286 (385)
..+...|..+..+ + .|.+++++.++. ++|+|++..+.|| ...|+++|+++|+ ++|+++++|+
T Consensus 112 --~~l~~~gi~~~~~----~-----~~~~~~~~~i~~-~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDn 179 (393)
T d1n8pa_ 112 --KVANAHGVETSFT----N-----DLLNDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179 (393)
T ss_dssp --HTSTTTCSCCEEE----S-----SHHHHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEEC
T ss_pred --hhhhcccceeEEe----e-----cchHHHHHHhhh-hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEec
Confidence 1223445432221 1 345788888865 7899999998888 5789999999999 6789999999
Q ss_pred cccccccccCcccCCCC-CCcEEEECCCccCcccc---EEEEEEeCCCCchhHHHHHHhh
Q 016668 287 AHISGLVAASVVADPFK-YCDVVTTTTHKSLRGPR---GGMIFFKKDPVLGVELESAINN 342 (385)
Q Consensus 287 ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l~Gpr---gG~I~~~~~~~~~~~~~~~i~~ 342 (385)
+.+..+ ...|++ |+||++.|+.|++.|.. +|.|+.+++ ++.+++..
T Consensus 180 T~atP~-----~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~-----~~~~~l~~ 229 (393)
T d1n8pa_ 180 TFLSPY-----ISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNK-----PLYERLQF 229 (393)
T ss_dssp TTTHHH-----HCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH-----HHHHHHHH
T ss_pred CccCcc-----cCCchhhCCCEEEEccccccCCCCccccceeeecch-----hHHHHHHH
Confidence 865433 347888 89999999999998853 587777764 56665543
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.56 E-value=1.4e-14 Score=139.15 Aligned_cols=152 Identities=16% Similarity=0.216 Sum_probs=116.3
Q ss_pred HHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC
Q 016668 155 KRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES 234 (385)
Q Consensus 155 ~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (385)
++++++.|.+. .+.+.||+.|+..++.++++|||+|++.+.-|||... .+. ..+...|..+..+ |
T Consensus 5 ~~la~Leg~~~-----a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~--~~~--~~l~~~gi~~~~~----d-- 69 (331)
T d1pffa_ 5 GKIAKLEHAEA-----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHA--LFE--HQLRKFGVEVDFI----D-- 69 (331)
T ss_dssp HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHH--HHH--THHHHTTCEEEEE----C--
T ss_pred HHHHHHhCCCe-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHH--HHH--HHHHhcCeEEEEe----c--
Confidence 47889999886 3678999999999999999999999999887876422 110 1233456544432 2
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEcCCCCC--CCCCHHHHHHHH-HHcCcEEEEeccccccccccCcccCCCC-CCcEEEE
Q 016668 235 TGLVDYDMLEKTAILFRPKLIIAGASAYP--RDFDYPRMRQIA-DAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTT 310 (385)
Q Consensus 235 ~~~iD~d~le~~i~~~~pklIi~~~s~~~--~~~dl~~I~~ia-~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~ 310 (385)
.-|++.+++.+++ ++|+|++..+.+| ...|++++++++ +++|+++++|++....+ ...|++ |+|+++.
T Consensus 70 --~~d~~~~~~~i~~-~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~-----~~~pl~~GaDiVv~ 141 (331)
T d1pffa_ 70 --MAVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPI-----LTNPLDLGVDIVVH 141 (331)
T ss_dssp --TTSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHH-----HCCGGGGTCSEEEE
T ss_pred --ccchhhHhhhccc-ccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccc-----cccccccCCCEEEe
Confidence 2377889998865 7899999888777 567999999885 67899999999875443 346888 8999999
Q ss_pred CCCccCccc---cEEEEEEeCC
Q 016668 311 TTHKSLRGP---RGGMIFFKKD 329 (385)
Q Consensus 311 S~hK~l~Gp---rgG~I~~~~~ 329 (385)
|+.|++.|. -||.++.+++
T Consensus 142 S~TKy~~Gh~d~~~G~v~~~~~ 163 (331)
T d1pffa_ 142 SATKYINGHTDVVAGLVCSRAD 163 (331)
T ss_dssp ETTTTTSSSSSCCCEEEEECHH
T ss_pred cchhhcCCCCcccccccccccc
Confidence 999999885 3588888763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.56 E-value=3.4e-14 Score=139.71 Aligned_cols=235 Identities=15% Similarity=0.172 Sum_probs=145.3
Q ss_pred hhcccCCh-HHHHHHHHHHHHhh-hccccccC----CC---CCcHHHHHHHhhHhhc-cCCCCCCCCCCCCCcHHHHHHH
Q 016668 81 YSLGEADP-EVCEIITKEKERQF-KSLELIAS----EN---FTSRAVMEAVGSCLTN-KYSEGLPGKRYYGGNEYIDELE 150 (385)
Q Consensus 81 ~~l~~~dp-~~~~~i~~e~~~~~-~~l~Lias----en---~~s~~V~~al~s~l~~-~y~~g~p~~r~~~G~~~~~~le 150 (385)
.++...+| .++.+.++-++..+ +.|+|--+ ++ ++.+.|+++......+ ...++|+. ..|.+ +++
T Consensus 6 ~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p---~~G~~---~lr 79 (412)
T d1yaaa_ 6 NNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLG---ITGLP---SLT 79 (412)
T ss_dssp TTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCC---TTCCH---HHH
T ss_pred hcCCcCCCChHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCC---CCCCH---HHH
Confidence 34666666 46666654333222 34666522 22 3458899886644332 23345665 34666 777
Q ss_pred HHHHHHHHHHcCCCC-CCCcceeecCCcHHHH--HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEE
Q 016668 151 TLCQKRALAAFNLDE-NKWGVNVQPLSGSPAN--FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESM 227 (385)
Q Consensus 151 ~~~~~~la~lfg~~~-~~~~~~V~~~sGs~A~--~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i 227 (385)
+++++++.+..+... .+.-+.+.+.+|..+. ...+..++.|||.|++++|.+..|.. .+...|..+..+
T Consensus 80 ~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~--------~~~~~g~~~~~~ 151 (412)
T d1yaaa_ 80 SNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA--------IFENQGLKTATY 151 (412)
T ss_dssp HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH--------HHHTTTCCEEEE
T ss_pred HHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHH--------HHHHcCCceecc
Confidence 777776665555321 1110111112222222 22334568899999999997765532 345667766666
Q ss_pred eccccCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcccC
Q 016668 228 PYRLDESTGLVDYDMLEKTAILF--RPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD 300 (385)
Q Consensus 228 ~~~~~~~~~~iD~d~le~~i~~~--~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~ 300 (385)
++.- ++++.+|.+.+++.+... ++++|+++.++||+ .. .+++|.++|+++++++++|+++ .++.+.+....
T Consensus 152 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y-~~l~~~~~~~~ 229 (412)
T d1yaaa_ 152 PYWA-NETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAY-QGFATGDLDKD 229 (412)
T ss_dssp ECEE-TTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESC-TTTSSSCHHHH
T ss_pred cccc-cccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeeccee-eecccCCcccc
Confidence 6532 245678888888777542 34577888888874 33 3789999999999999999996 67776543221
Q ss_pred C---------CCCCc--EEEECCCccC--ccccEEEEEEeCCCC
Q 016668 301 P---------FKYCD--VVTTTTHKSL--RGPRGGMIFFKKDPV 331 (385)
Q Consensus 301 p---------~~gaD--iv~~S~hK~l--~GprgG~I~~~~~~~ 331 (385)
+ .+..+ +++.|++|++ +|+|.|++++..+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~ 273 (412)
T d1yaaa_ 230 AYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQ 273 (412)
T ss_dssp THHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSC
T ss_pred hhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhh
Confidence 1 12222 7889999986 799999999988744
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=3.5e-15 Score=145.90 Aligned_cols=248 Identities=15% Similarity=0.095 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHhh-hccccccC----C---CCCcHHHHHHHhhHhhccC-CCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016668 90 VCEIITKEKERQF-KSLELIAS----E---NFTSRAVMEAVGSCLTNKY-SEGLPGKRYYGGNEYIDELETLCQKRALAA 160 (385)
Q Consensus 90 ~~~~i~~e~~~~~-~~l~Lias----e---n~~s~~V~~al~s~l~~~y-~~g~p~~r~~~G~~~~~~le~~~~~~la~l 160 (385)
++.++++-+...+ +.|+|--+ + .+..+.|.+|......+.. ..+|+. ..|.+ +|++..++++.+.
T Consensus 13 i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p---~~G~~---~lR~aia~~~~~~ 86 (397)
T d3tata_ 13 ILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLP---MEGLN---CYRHAIAPLLFGA 86 (397)
T ss_dssp TTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCC---TTCCH---HHHHHHHHHHTCS
T ss_pred HHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCC---cccCH---HHHHHHHHHHhhc
Confidence 5666665443333 33666532 1 2346889998764433221 223444 34665 7887766666655
Q ss_pred cCCCCCCCcceeecCCc-HH----HHHHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCC-
Q 016668 161 FNLDENKWGVNVQPLSG-SP----ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDES- 234 (385)
Q Consensus 161 fg~~~~~~~~~V~~~sG-s~----A~~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~- 234 (385)
.+.... . -+|..+.| +. ++.+++.++++|||+|++++|.+.+|.. .+...|..+..++ ++.+
T Consensus 87 ~~~~~~-~-~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~--------~~~~~G~~~~~v~--~~~~~ 154 (397)
T d3tata_ 87 DHPVLK-Q-QRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA--------IFAGAGFEVSTYP--WYDEA 154 (397)
T ss_dssp SCHHHH-T-TCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHH--------HHHTTTCCCEECC--CCCTT
T ss_pred cCCcCC-c-CcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHH--------HHHHcCCEEEEEe--cchhh
Confidence 554311 0 12333222 21 4555666778999999999997766532 3456676554444 5433
Q ss_pred CCCCCHHHHHHHhhh--cCCcEEEEcCCCCCC--CC---CHHHHHHHHHHcCcEEEEeccccccccccCcc-cCCC----
Q 016668 235 TGLVDYDMLEKTAIL--FRPKLIIAGASAYPR--DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVV-ADPF---- 302 (385)
Q Consensus 235 ~~~iD~d~le~~i~~--~~pklIi~~~s~~~~--~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~-~~p~---- 302 (385)
.+.+|.+++.+.+.. .++++++++.++||+ .. .+++|.++|++++++++.|+++ .++.+++.. +...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y-~~l~~~~~~~~~~~~~~~ 233 (397)
T d3tata_ 155 TNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAY-QGFGAGMEEDAYAIRAIA 233 (397)
T ss_dssp TSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSC-TTSSSCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhh-hhhccCCcccchhhhhhh
Confidence 457888888777643 245678888888873 33 3778999999999999999996 666654321 1111
Q ss_pred C-CCc-EEEECCCccC--ccccEEEEEEeCCCC-chhHHHHHHhhccCCCccCCChHHH
Q 016668 303 K-YCD-VVTTTTHKSL--RGPRGGMIFFKKDPV-LGVELESAINNAVFPGLQGGPHNHT 356 (385)
Q Consensus 303 ~-gaD-iv~~S~hK~l--~GprgG~I~~~~~~~-~~~~~~~~i~~~~fp~~qg~p~~~~ 356 (385)
. +-. +++.|++|++ +|+|.|++.+....+ ....+...+.........+.+...+
T Consensus 234 ~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 292 (397)
T d3tata_ 234 SAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGA 292 (397)
T ss_dssp TTTCCCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHH
T ss_pred hcCCceEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHH
Confidence 1 222 6789999985 799999999888643 1222333333333333344444443
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.54 E-value=3.1e-15 Score=145.50 Aligned_cols=197 Identities=15% Similarity=0.149 Sum_probs=128.7
Q ss_pred cCCCCCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh
Q 016668 109 ASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI 188 (385)
Q Consensus 109 asen~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al 188 (385)
++..++|+.|++++...+.+.+.. +..+...+.... ++.+.+++++++++|+++++ .+++.++|+++..++...
T Consensus 34 as~g~~p~~v~~a~~~~l~~~~~~--~~~~~~~~~~~~-~~~e~~R~~iA~llga~~~e---i~~~~~~T~~~~~~~~~~ 107 (404)
T d1qz9a_ 34 NSLGARPVAALARAQAVIAEEWGN--GLIRSWNSAGWR-DLSERLGNRLATLIGARDGE---VVVTDTTSINLFKVLSAA 107 (404)
T ss_dssp TTSCCCBTTHHHHHHHHHHTCCCC--CGGGHHHHTSGG-GHHHHHHHHHHTTTTCCTTS---EEECSCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhcc--cCcccccchhHH-HHHHHHHHHHHHHhCCCCCc---EEEecCchHHHHHHhhhh
Confidence 677788999999999888765532 221111111112 33445899999999999864 345566777877665422
Q ss_pred ------ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC--
Q 016668 189 ------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS-- 260 (385)
Q Consensus 189 ------l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s-- 260 (385)
..+||.|++.+..+..... .....+..+..+.... ++.++.+.+++.+.+ ++++|++...
T Consensus 108 ~~~~~~~~~~~~vi~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~-~T~lV~i~~v~~ 175 (404)
T d1qz9a_ 108 LRVQATRSPERRVIVTETSNFPTDL--------YIAEGLADMLQQGYTL---RLVDSPEELPQAIDQ-DTAVVMLTHVNY 175 (404)
T ss_dssp HHHHHHHSTTCCEEEEETTSCHHHH--------HHHHHHHHHHCSSCEE---EEESSGGGHHHHCST-TEEEEEEESBCT
T ss_pred hhhhcccCCCcEEEEeccccchHHH--------HHHhhhheeeeeceec---cccccchhHHHhcCC-CceEEEEecccc
Confidence 4689999887654322110 0011111111111111 245677888888865 7899887654
Q ss_pred CCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE--EEEEEeC
Q 016668 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG--GMIFFKK 328 (385)
Q Consensus 261 ~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg--G~I~~~~ 328 (385)
.+|...|+++|+++|+++|+++++|.+|+.|.+ +..++ ++|++++|.||++.+|.| |+++.++
T Consensus 176 ~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~ 242 (404)
T d1qz9a_ 176 KTGYMHDMQALTALSHECGALAIWDLAHSAGAV-----PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSP 242 (404)
T ss_dssp TTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECT
T ss_pred cccceecHHHHhccccccccceeEEeecccccc-----ccccccccceEEEEechhhcccCCceEEEEEech
Confidence 357889999999999999999999999988754 22333 899999999999865543 4555444
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=1.8e-13 Score=127.43 Aligned_cols=195 Identities=22% Similarity=0.195 Sum_probs=124.4
Q ss_pred cCCCC--CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHH
Q 016668 109 ASENF--TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYT 186 (385)
Q Consensus 109 asen~--~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~ 186 (385)
.+||. ++|+|++|+.+. ..|...|+..+.+.+||+ ++++++|.+. .+.++|||.||..++.
T Consensus 5 ~~~~~t~p~p~v~~A~~~a--------~~g~~~yg~~p~~~~le~----~lA~~~G~~~-----~~~~~sGt~A~~~al~ 67 (343)
T d1m6sa_ 5 RSDTVTKPTEEMRKAMAQA--------EVGDDVYGEDPTINELER----LAAETFGKEA-----ALFVPSGTMGNQVSIM 67 (343)
T ss_dssp SCGGGCCCCHHHHHHHHTC--------CCCCGGGTCCHHHHHHHH----HHHHHTTCSE-----EEEESCHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHhh--------hcCCcccCCCHHHHHHHH----HHHHHHCCCe-----EEEeCCHHHHHHHHHH
Confidence 34553 689999998643 122334666787778875 6889999875 4678899999999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcC-----CcEEEE-cCC
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIA-GAS 260 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~-----pklIi~-~~s 260 (385)
++.++||.+++..+.+.++..+. ......+..+..++ . +.+..|++.+++.+...+ +..+++ ...
T Consensus 68 a~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 138 (343)
T d1m6sa_ 68 AHTQRGDEVILEADSHIFWYEVG-----AMAVLSGVMPHPVP--G--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTH 138 (343)
T ss_dssp HHCCTTCEEEEETTCHHHHSSTT-----HHHHHTCCEEEEEC--E--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSB
T ss_pred HHhccCCceeccccccceeeecc-----cccccccceeeccc--c--ccCccCHHHHHHhhhhhhccccccccccccccc
Confidence 99999999999887653332211 01122233222222 2 356789999998885421 233333 323
Q ss_pred CCC--CCC---CHHHHHHHHHHcCcEEEEeccccccccccCcccC--CCCCCcEEEECCCccCccccEEEEEEeCC
Q 016668 261 AYP--RDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVAD--PFKYCDVVTTTTHKSLRGPRGGMIFFKKD 329 (385)
Q Consensus 261 ~~~--~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~--p~~gaDiv~~S~hK~l~GprgG~I~~~~~ 329 (385)
+++ ... ++++|+++|+++|+++++|++|..+......... .....+..+++.+|...|..+|.+....+
T Consensus 139 ~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (343)
T d1m6sa_ 139 NRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRD 214 (343)
T ss_dssp TTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHH
T ss_pred ccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHH
Confidence 222 233 4678888889999999999998654332211110 01144567777777788888887777763
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.49 E-value=7.5e-13 Score=132.84 Aligned_cols=177 Identities=18% Similarity=0.129 Sum_probs=122.1
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCC------CcceeecCCcHHHHHHHHHHhcc----------CC--------C-EEe
Q 016668 142 GNEYIDELETLCQKRALAAFNLDENK------WGVNVQPLSGSPANFEVYTAILK----------PH--------D-RIM 196 (385)
Q Consensus 142 G~~~~~~le~~~~~~la~lfg~~~~~------~~~~V~~~sGs~A~~~a~~all~----------pG--------D-~Vl 196 (385)
-.+...++|+.+.+|++++||.+... .+--+++++||.||+.++.+.-+ +| + .|+
T Consensus 107 ~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~ 186 (476)
T d1js3a_ 107 ASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY 186 (476)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEE
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEE
Confidence 34666789999999999999996421 11245677889999988754321 11 1 244
Q ss_pred ecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcC-----CcEEEE--cCCCCCCCCCHH
Q 016668 197 GLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFR-----PKLIIA--GASAYPRDFDYP 269 (385)
Q Consensus 197 ~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~-----pklIi~--~~s~~~~~~dl~ 269 (385)
+.+. +|.|. .+.+...|..+..++ +| +++.+|+++|++.+++.+ |-+|+. |.+.++...|++
T Consensus 187 ~s~~---~H~Si-----~ka~~~lGl~~~~v~--~d-~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~ 255 (476)
T d1js3a_ 187 ASDQ---AHSSV-----ERAGLIGGVKLKAIP--SD-GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLL 255 (476)
T ss_dssp EETT---CCHHH-----HHHHHHHTCEEEEEC--CC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH
T ss_pred eccc---ccHHH-----HHHHHhcCceEEEec--cC-CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHH
Confidence 4442 44432 134566787666555 55 468999999999996532 334443 445677888999
Q ss_pred HHHHHHHHcCcEEEEeccccccccccCcccCCC---CCCcEEEECCCccCccccE-EEEEEeCC
Q 016668 270 RMRQIADAVGALLMMDMAHISGLVAASVVADPF---KYCDVVTTTTHKSLRGPRG-GMIFFKKD 329 (385)
Q Consensus 270 ~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~---~gaDiv~~S~hK~l~Gprg-G~I~~~~~ 329 (385)
+|+++|+++|+|+++|+|++............+ +.+|.++.++||++..|-+ |++++++.
T Consensus 256 ~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~ 319 (476)
T d1js3a_ 256 EVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR 319 (476)
T ss_dssp HHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCH
T ss_pred HHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccch
Confidence 999999999999999999865444333222222 3689999999999988865 77777764
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2.1e-13 Score=130.84 Aligned_cols=169 Identities=13% Similarity=0.084 Sum_probs=114.9
Q ss_pred HHHHHHHcCCCCCCCcceeecCCcHH-HHHHHHHHhccCCC-EEeecCCCCCccccCCccccccccccCcceEEEEeccc
Q 016668 154 QKRALAAFNLDENKWGVNVQPLSGSP-ANFEVYTAILKPHD-RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL 231 (385)
Q Consensus 154 ~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~~all~pGD-~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~ 231 (385)
++++++++|++++ +|..++|+. |+..++.++++||| .|++++|.+..+.. .....|..+. .++.
T Consensus 62 r~~ia~~~gv~pe----~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~--------~~~~~g~~v~--~~~~ 127 (354)
T d1fg7a_ 62 IENYAQYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSV--------SAETIGVECR--TVPT 127 (354)
T ss_dssp HHHHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHH--------HHHHHTCEEE--ECCC
T ss_pred HHHHHHHhCCChH----HeeeccCchHHHHHHHHHhhccccccccccccccccchh--------hhhccCceee--cccc
Confidence 4568889999985 566777764 99999999999999 58888886654421 2345566444 4444
Q ss_pred cCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCC--CCCH---HHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CC
Q 016668 232 DESTGLVDYDMLEKTAILFRPKLIIAGASAYPR--DFDY---PRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YC 305 (385)
Q Consensus 232 ~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~--~~dl---~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-ga 305 (385)
+ +++.+|++++++.+. ++|+|+++++++|. ..+- +.+.+.++ .+.++++|++++ .+......+.... .-
T Consensus 128 ~-~~~~~d~~~l~~~~~--~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~-~f~~~~~~~~~~~~~~ 202 (354)
T d1fg7a_ 128 L-DNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYI-EFCPQASLAGWLAEYP 202 (354)
T ss_dssp C-TTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTG-GGSGGGCSGGGTTTCT
T ss_pred c-cccccchhhhhhccc--ccceeeccCCCccceeEeeeccccccccccc-ccccccccccch-hhccccccchhhcccc
Confidence 4 467899999988763 68999998888763 3443 44444443 577788888764 3333222222222 22
Q ss_pred -cEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCC
Q 016668 306 -DVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPG 347 (385)
Q Consensus 306 -Div~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~ 347 (385)
-+++.|++|++ +|.|.|++++++ ++.+.+.+...+.
T Consensus 203 ~~iv~~S~SK~~~laGlRiGy~i~~~------~~i~~l~~~~~~~ 241 (354)
T d1fg7a_ 203 HLAILRTLSKAFALAGLRCGFTLANE------EVINLLMKVIAPY 241 (354)
T ss_dssp TEEEEEESSSTTCCGGGCCEEEEECH------HHHHHHHHHSCSS
T ss_pred cceEEeCCccccCCCccccccccccc------hhhhhhhhhcCcc
Confidence 36789999986 789999999987 6777776654443
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.44 E-value=5.7e-13 Score=127.62 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=123.2
Q ss_pred cccccCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HH
Q 016668 105 LELIASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-AN 181 (385)
Q Consensus 105 l~Liasen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~ 181 (385)
|+|-.++| .+|+.+++++.+.+.+ ...||.. |.. +|++ .+++++|++.+ +|.+++|+. ++
T Consensus 25 idls~~~np~~~p~~~~~a~~~~~~~--~~~Yp~~----~~~---~Lr~----aia~~~~v~~~----~I~~~~g~~~~~ 87 (355)
T d1lc5a_ 25 LDFSANINPLGMPVSVKRALIDNLDC--IERYPDA----DYF---HLHQ----ALARHHQVPAS----WILAGNGETESI 87 (355)
T ss_dssp EECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCCT----TCH---HHHH----HHHHHHTSCGG----GEEEESSHHHHH
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHH--hccCCCC----ChH---HHHH----HHHHHhCCCHH----HEEecccHHHHH
Confidence 45544434 3589999998876532 2346542 222 4544 57788899874 577788876 55
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
..++.++.++++. +..|.+..+.. .....+..+..++++.+ +.+.+| +++++.+.. ++|+|+++.|+
T Consensus 88 ~~~~~~~~~~~~~--v~~p~~~~~~~--------~~~~~~~~~~~v~~~~~-~~~~~~-~~~~~~~~~-~~~~v~l~nP~ 154 (355)
T d1lc5a_ 88 FTVASGLKPRRAM--IVTPGFAEYGR--------ALAQSGCEIRRWSLREA-DGWQLT-DAILEALTP-DLDCLFLCTPN 154 (355)
T ss_dssp HHHHHHHCCSEEE--EEESCCTHHHH--------HHHHTTCEEEEEECCGG-GTTCCC-TTHHHHCCT-TCCEEEEESSC
T ss_pred HHHHhhhcccccc--ccCCccceecc--------ccccccccceeeeeecc-CCccce-eeeeecccc-ccceeeeeccc
Confidence 5544444333333 33444432211 22344555566664432 234555 455555544 78999988888
Q ss_pred CCC--CCC---HHHHHHHHHHcCcEEEEeccccccccccCcccCCC-C--CCcEEEECCCccC--ccccEEEEEEeCCCC
Q 016668 262 YPR--DFD---YPRMRQIADAVGALLMMDMAHISGLVAASVVADPF-K--YCDVVTTTTHKSL--RGPRGGMIFFKKDPV 331 (385)
Q Consensus 262 ~~~--~~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~-~--gaDiv~~S~hK~l--~GprgG~I~~~~~~~ 331 (385)
+|+ ..+ +++|.++|+++++++++|+++. .+...+....++ . .-.+++.|++|++ +|.|.|+++++++
T Consensus 155 NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~-- 231 (355)
T d1lc5a_ 155 NPTGLLPERPLLQAIADRCKSLNINLILDEAFI-DFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD-- 231 (355)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH--
T ss_pred Ccccccchhhhhhhhhhhcccccccccccccee-eeeeecccccccccccccceeecccccccccccccccceeccch--
Confidence 774 333 6788889999999999999974 333332211111 2 2237899999985 7899999998874
Q ss_pred chhHHHHHHhhcc
Q 016668 332 LGVELESAINNAV 344 (385)
Q Consensus 332 ~~~~~~~~i~~~~ 344 (385)
.+.+.++...
T Consensus 232 ---~~~~~~~~~~ 241 (355)
T d1lc5a_ 232 ---AAMARMRRQQ 241 (355)
T ss_dssp ---HHHHHHHHHS
T ss_pred ---hhhHHHHhhc
Confidence 4555565443
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.44 E-value=1.1e-12 Score=121.70 Aligned_cols=196 Identities=14% Similarity=0.070 Sum_probs=119.0
Q ss_pred ccCCCCC--cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHH
Q 016668 108 IASENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY 185 (385)
Q Consensus 108 iasen~~--s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~ 185 (385)
++|+|+. +|+|++|+.....+. ..+ |+..+ +.+.++++++++||.+.+ .++++|||.||..++
T Consensus 7 f~s~n~~g~~P~v~~A~~~a~~~~----~~~---~~~~~----~~~~l~~~la~~~g~~~~----v~f~~sGt~An~~a~ 71 (345)
T d1v72a1 7 FSSDNIAGASPEVAQALVKHSSGQ----AGP---YGTDE----LTAQVKRKFCEIFERDVE----VFLVPTGTAANALCL 71 (345)
T ss_dssp CSCGGGCCCCHHHHHHHHHTTSSC----CCS---TTCSH----HHHHHHHHHHHHHTSCCE----EEEESCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHhccC----ccc---cCCCH----HHHHHHHHHHHHHCCCcE----EEECCchHHHHHHHH
Confidence 3678885 999999997543211 111 33344 333456789999998762 456689999999999
Q ss_pred HHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhc-----CCcEE--EEc
Q 016668 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILF-----RPKLI--IAG 258 (385)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~-----~pklI--i~~ 258 (385)
.+++++++.+++....|..|..... .....+..+..++. ...+.+|++.+++.+... .+..+ ...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (345)
T d1v72a1 72 SAMTPPWGNIYCHPASHINNDECGA-----PEFFSNGAKLMTVD---GPAAKLDIVRLRERTREKVGDVHTTQPACVSIT 143 (345)
T ss_dssp HTSCCTTEEEEECTTSHHHHSSTTH-----HHHHTTSCEEEECC---CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEE
T ss_pred HHHHhcCCccccccccceeeechhh-----HHHhcCcccccccc---cccccccHHHhhhhhcccccccccccceeeeee
Confidence 9999999999887765544332211 12233443333321 134679999999988642 23332 222
Q ss_pred CCC-CCC---CCCHHHHHHHHHHcCcEEEEeccccccccccCcccCC-CC---CCcEEEECCCccCccccEEEEEE
Q 016668 259 ASA-YPR---DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADP-FK---YCDVVTTTTHKSLRGPRGGMIFF 326 (385)
Q Consensus 259 ~s~-~~~---~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p-~~---gaDiv~~S~hK~l~GprgG~I~~ 326 (385)
..+ .+. ..+++++.++|+++|+++++|++|..+.......... .. ..+..+.+.+|...+..++.+..
T Consensus 144 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (345)
T d1v72a1 144 QATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLF 219 (345)
T ss_dssp SSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEES
T ss_pred ccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccc
Confidence 222 222 2357888899999999999999986554432211111 11 34466777777654444444333
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.32 E-value=5.2e-13 Score=127.93 Aligned_cols=202 Identities=12% Similarity=0.055 Sum_probs=126.0
Q ss_pred ccccCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc--HHHHH
Q 016668 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG--SPANF 182 (385)
Q Consensus 106 ~Liasen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG--s~A~~ 182 (385)
+..|++..+|+.|+++|...+.+.+..|.... -.+-+.++.+ +-+.+++.++++||++.+ + .|.+++| +.++.
T Consensus 6 ~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~-~~~~~r~~l~~l~~~~~~-~--~i~~~~gs~t~~~e 81 (361)
T d2c0ra1 6 NFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEA-VHNEAQARLLALLGNPTG-Y--KVLFIQGGASTQFA 81 (361)
T ss_dssp ECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHH-HHHHHHHHHHHHTTCCSS-E--EEEEESSHHHHHHH
T ss_pred ccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHH-HHHHHHHHHHHHhCCCCC-C--EEEEECCCchHHHH
Confidence 34578888999999999987766432222110 0011344444 445589999999999763 2 3334333 34667
Q ss_pred HHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC
Q 016668 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262 (385)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~ 262 (385)
++...++.+||++++..- |+..+.+. ......|..+..+..+. ...+|++++++.+... +.+.+.. .+
T Consensus 82 a~~~~l~~~~~~~l~~~~---g~~~~~~~---~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~v~~-~t 149 (361)
T d2c0ra1 82 MIPMNFLKEGQTANYVMT---GSWASKAL---KEAKLIGDTHVAASSEA---SNYMTLPKLQEIQLQD--NAAYLHL-TS 149 (361)
T ss_dssp HHHHHHCCTTCEEEEEEC---SHHHHHHH---HHHHHHSCEEEEEECGG---GTTCSCCCGGGCCCCT--TEEEEEE-ES
T ss_pred HHHhccccCCCceEEEee---chhhhhhh---hhhhhcCceeeeecccc---ccccchhhhhhhcccC--cceEEEE-ec
Confidence 777788999999987652 33333221 12344566555555333 3467777777766432 3333321 23
Q ss_pred CCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCcEEEECCCccCccccEEEEEEeC
Q 016668 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKK 328 (385)
Q Consensus 263 ~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaDiv~~S~hK~l~GprgG~I~~~~ 328 (385)
+...++++|.++|+++|+++++|++++.|.. +-+++..|+.+.|+||.+..|.++.++...
T Consensus 150 g~~~~~~~i~~~~~~~~al~~vDavss~g~~-----~id~~~~di~~~s~~k~~~~~~~~~~~~~~ 210 (361)
T d2c0ra1 150 NETIEGAQFKAFPDTGSVPLIGDMSSDILSR-----PFDLNQFGLVYAGAQKNLGPSGVTVVIVRE 210 (361)
T ss_dssp EETTTTEECSSCCCCTTSCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTTCCSSCEEEEEEG
T ss_pred ccceecceEEEeeccCCceEEEEeecccccc-----ccccccceeEEEecccccccccCcEEEEEh
Confidence 4455677888999999999999999976632 333446788888899988655554444443
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=2.4e-11 Score=115.43 Aligned_cols=195 Identities=17% Similarity=0.132 Sum_probs=119.6
Q ss_pred cCCC--CCcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH-HHHHHH
Q 016668 109 ASEN--FTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP-ANFEVY 185 (385)
Q Consensus 109 asen--~~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~-A~~~a~ 185 (385)
-.|| .+|+.+.+++...+.......||. .|.+ +|++..++++.+ -+++.+ +|.+++|+. ++.+
T Consensus 26 ~~enp~~~p~~i~~~~~~~~~~~~~~~yp~----~g~~---~Lr~aia~~~~~-~~v~~d----~I~it~G~~~~l~~-- 91 (334)
T d2f8ja1 26 LNENPFPFPEDLVDEVFRRLNSDALRIYYD----SPDE---ELIEKILSYLDT-DFLSKN----NVSVGNGADEIIYV-- 91 (334)
T ss_dssp SCCCSSCCCHHHHHHHHHHCCTTGGGSCCC----SSCH---HHHHHHHHHHTC-SSCCGG----GEEEEEHHHHHHHH--
T ss_pred CCCCCCCCCHHHHHHHHHHhhcchhcCCCC----CCcH---HHHHHHHHHhcc-cCCCcc----eEEecCcchhHHHH--
Confidence 4455 568889998877765433334544 2444 566544433322 123332 577788875 5543
Q ss_pred HHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCC--
Q 016668 186 TAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYP-- 263 (385)
Q Consensus 186 ~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~-- 263 (385)
++++||+|++.+|.|.++.. .+...|..+ ++++++++....+ .. ..++++++++.++||
T Consensus 92 --l~~~~d~v~i~~P~y~~~~~--------~~~~~g~~~--v~v~~~~~~~~~~------~~-~~~~~~l~l~nP~NPtG 152 (334)
T d2f8ja1 92 --MMLMFDRSVFFPPTYSCYRI--------FAKAVGAKF--LEVPLTKDLRIPE------VN-VGEGDVVFIPNPNNPTG 152 (334)
T ss_dssp --HHHHSSEEEECSSCCHHHHH--------HHHHHTCCE--EECCCCTTSCCCC------CC-CCTTEEEEEESSCTTTC
T ss_pred --Hhhhcccccccccccccccc--------chhccCCcc--ccccccccccccc------cc-cccceEEEecccccccc
Confidence 45678999999987765432 334567644 4444554332221 12 236889988888876
Q ss_pred CCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCCCCc--EEEECCCccC--ccccEEEEEEeCCCCchhHHHHH
Q 016668 264 RDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCD--VVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESA 339 (385)
Q Consensus 264 ~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~gaD--iv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~ 339 (385)
...+.++|.+++ ++++++++|++++- ......... ....| +++.|++|++ +|+|.|++++++ ++.++
T Consensus 153 ~~~s~~~l~~~~-~~~~~ii~Dd~~~~-~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~------~~i~~ 223 (334)
T d2f8ja1 153 HVFEREEIERIL-KTGAFVALDEAYYE-FHGESYVDF-LKKYENLAVIRTFSKAFSLAAQRVGYVVASE------KFIDA 223 (334)
T ss_dssp CCCCHHHHHHHH-TTTCEEEEECTTGG-GTCCCCGGG-GGTCSSEEEEEESTTTSSCTTTCEEEEEECH------HHHHH
T ss_pred eeecHHHhhccc-cceeEEeecccchh-hcccccccc-cccCceEEEEecCccccchhhhhhhhcccch------HHHHH
Confidence 466777887764 57899999998743 222211111 11223 7889999985 788999999987 67777
Q ss_pred HhhccC
Q 016668 340 INNAVF 345 (385)
Q Consensus 340 i~~~~f 345 (385)
+.....
T Consensus 224 l~~~~~ 229 (334)
T d2f8ja1 224 YNRVRL 229 (334)
T ss_dssp HHHHSC
T ss_pred HHHhhc
Confidence 766543
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.11 E-value=8.4e-11 Score=116.01 Aligned_cols=181 Identities=14% Similarity=0.048 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcceeecCCcH-HHHHHHHHHh--------ccCCCEEeecCCCCCccccCCccccccccc
Q 016668 148 ELETLCQKRALAAFNLDENKWGVNVQPLSGS-PANFEVYTAI--------LKPHDRIMGLDLPHGGHLSHGFMTPKRRVS 218 (385)
Q Consensus 148 ~le~~~~~~la~lfg~~~~~~~~~V~~~sGs-~A~~~a~~al--------l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~ 218 (385)
+|++.+++.....-|+..++. .|.+++|+ +++.+++.+| ++|||+|+++.|.|..+.. .+.
T Consensus 104 ~L~~~i~~lh~~~gna~t~~~--~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~--------~~~ 173 (425)
T d2hoxa1 104 ELEKTIKELHEVVGNAAAKDR--YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE--------QTK 173 (425)
T ss_dssp HHHHHHHHHHHHHTCBCCTTC--EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH--------HHH
T ss_pred HHHHHHHHHHhhhCCCCCCCC--EEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHH--------HHH
Confidence 677766554433334333222 46677775 5999999998 5799999999987655422 122
Q ss_pred cCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcc
Q 016668 219 GTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVV 298 (385)
Q Consensus 219 ~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~ 298 (385)
+.+.... . +.+|.+.+++.++. +++++++++|+||+-. +. -+-.+++.+|+|+++. +..+
T Consensus 174 ~~~~~~~--~-------~~~D~~~~~~~~~~-~~~ii~l~sPnNPtG~-l~----~~v~~~~~~I~DEaY~-~~~f---- 233 (425)
T d2hoxa1 174 YFDKKGY--V-------WAGNAANYVNVSNP-EQYIEMVTSPNNPEGL-LR----HAVIKGCKSIYDMVYY-WPHY---- 233 (425)
T ss_dssp HSCBTTE--E-------EEEEGGGGTTCSCG-GGEEEEEESSCTTTCC-CC----CCSSTTCEEEEECTTC-STTT----
T ss_pred HcCCCCC--c-------cCCCHHHHHhhCCC-CceEEEEECCCCCCcc-hh----hhhhhCCEEEEecccc-Cccc----
Confidence 3332111 1 23455666665544 7899999999998532 10 0223589999999973 2111
Q ss_pred cCCCC---CCcEEEECCCccC--ccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHH
Q 016668 299 ADPFK---YCDVVTTTTHKSL--RGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLK 365 (385)
Q Consensus 299 ~~p~~---gaDiv~~S~hK~l--~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~ 365 (385)
.++. .-+|++.|++|++ +|+|.|+++++++ ++.+++.........+.+...++++++ +|+
T Consensus 234 -~~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~-----~i~~~~~~~~~~~~~~vs~~~Q~aa~~-aL~ 298 (425)
T d2hoxa1 234 -TPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDE-----SVYNNLLNYMTKNTEGTPRETQLRSLK-VLK 298 (425)
T ss_dssp -SCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCH-----HHHHHHHHHHHHHTSSCCHHHHHHHHH-HHH
T ss_pred -cchhhhcCCeEEEEeCHHhccCcchheeeEEeCCH-----HHHHHHHHhhccCcccCCHHHHHHHHH-Hhh
Confidence 2222 2358999999996 8999999888775 666666544332233445555655543 444
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.10 E-value=1e-09 Score=99.69 Aligned_cols=194 Identities=11% Similarity=0.133 Sum_probs=110.0
Q ss_pred CCCCC--cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeec-CCcHHHHHHHHH
Q 016668 110 SENFT--SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQP-LSGSPANFEVYT 186 (385)
Q Consensus 110 sen~~--s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~-~sGs~A~~~a~~ 186 (385)
+||.. +|.|++|+....... ..|| +-. ++.+.+++++++++|++.+ +|++ ++||+||..++.
T Consensus 6 nd~~~g~~P~v~eAl~~~~~~~-~~~y------~~~----~~~~~lr~~ia~~~g~~~~----~v~~tsggtean~~a~~ 70 (340)
T d1svva_ 6 NDYSVGMHPKILDLMARDNMTQ-HAGY------GQD----SHCAKAARLIGELLERPDA----DVHFISGGTQTNLIACS 70 (340)
T ss_dssp CSCSSCCCHHHHHHHHHHTTCC-CCST------TCS----HHHHHHHHHHHHHHTCTTS----EEEEESCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhhcC-CCCC------CCC----HHHHHHHHHHHHHhCCCcc----eEEEcCCHHHHHHHHHH
Confidence 44443 799999998654322 2222 222 3334467789999999874 4555 567889999999
Q ss_pred HhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhh----cCC--cEEEEcCC
Q 016668 187 AILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAIL----FRP--KLIIAGAS 260 (385)
Q Consensus 187 all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~----~~p--klIi~~~s 260 (385)
++.+++|+++...+.+.++..... ............+ .....+.+........ ..+ +++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (340)
T d1svva_ 71 LALRPWEAVIATQLGHISTHETGA-----IEATGHKVVTAPC-----PDGKLRVADIESALHENRSEHMVIPKLVYISNT 140 (340)
T ss_dssp HHCCTTEEEEEETTSHHHHSSTTH-----HHHTTCCEEEECC-----TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS
T ss_pred HHhhhccccccccccceeeeeccc-----ccccceeeeeccc-----ccccccchhHHHHhhhhhcccCCcceeeeeccc
Confidence 999999999988765543322211 1111111111111 1223343433333221 112 23333333
Q ss_pred C-CCCCC---CHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC----CCcEEEECCCccCccccEEEEEEeC
Q 016668 261 A-YPRDF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK----YCDVVTTTTHKSLRGPRGGMIFFKK 328 (385)
Q Consensus 261 ~-~~~~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~----gaDiv~~S~hK~l~GprgG~I~~~~ 328 (385)
+ .+... ++..+.++|+++|+++++|.++..+....+....... ..++...+..|...++.+++.....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
T d1svva_ 141 TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILND 216 (340)
T ss_dssp CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSG
T ss_pred ccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccch
Confidence 3 34443 3566789999999999999998765544332221111 2346777777876666665555443
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.09 E-value=2e-11 Score=116.04 Aligned_cols=199 Identities=9% Similarity=-0.056 Sum_probs=115.4
Q ss_pred ccccCCCCCcHHHHHHHhhHhhccCCCCCCC--CCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHH--HH
Q 016668 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPG--KRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSP--AN 181 (385)
Q Consensus 106 ~Liasen~~s~~V~~al~s~l~~~y~~g~p~--~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~--A~ 181 (385)
+..|++..+|++|++++...+.+.+..| .+ ...+.+.++. ++-+.+++.++++||++.+ ..|.+++||. ++
T Consensus 6 nF~pGP~~~p~~V~~a~~~~~~~~~~~~-~~~~~~sHRs~~~~-~~~~~~r~~l~~l~~~~~~---~~i~~~~gt~~~~~ 80 (360)
T d1w23a_ 6 NFNAGPSALPKPALERAQKELLNFNDTQ-MSVMELSHRSQSYE-EVHEQAQNLLRELLQIPND---YQILFLQGGASLQF 80 (360)
T ss_dssp ECCSSSCCCCHHHHHHHHHTSSSSTTSS-SCGGGSCTTSHHHH-HHHHHHHHHHHHHHTCCTT---EEEEEESSHHHHHH
T ss_pred EeCCCCcCCCHHHHHHHHHHHHhhcccC-ccccccCcCCHHHH-HHHHHHHHHHHHHhCCCCC---CEEEEeCCcHHHHH
Confidence 3457788889999999998775533211 11 0111233444 4545589999999999864 3566666654 44
Q ss_pred HHHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 016668 182 FEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261 (385)
Q Consensus 182 ~~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~ 261 (385)
.++...+.+++|.+++... |+....+ ...+...+........... ...+++++++... ..+...+. ..
T Consensus 81 ~~~~~~~~~~~~~v~~~~~---g~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~-~~ 148 (360)
T d1w23a_ 81 TMLPMNLLTKGTIGNYVLT---GSWSEKA---LKEAKLLGETHIAASTKAN---SYQSIPDFSEFQL--NENDAYLH-IT 148 (360)
T ss_dssp HHHHHHHCCTTCEEEEEEC---SHHHHHH---HHHHHTTSEEEEEEECGGG---TSCSCCCGGGCCC--CTTEEEEE-EE
T ss_pred HHHHhhhcccCcccceeec---cchhhhh---HHHHHHhhhcceeeccccc---cccchhhhhhccc--ccccceeE-ec
Confidence 4455566788898887752 3332221 1123344444443333221 2233334443332 23333332 23
Q ss_pred CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccEEEEEEe
Q 016668 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRGGMIFFK 327 (385)
Q Consensus 262 ~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~GprgG~I~~~ 327 (385)
++...|+++|.++|+++|+++++|++++.|.. +-+++ ++|+..++.||+++ |.+|+++.+
T Consensus 149 tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~-----~id~~~~~vd~~~~~~~k~~~-~~~~~~~~~ 210 (360)
T d1w23a_ 149 SNNTIYGTQYQNFPEINHAPLIADMSSDILSR-----PLKVNQFGMIYAGAQKNLGPS-GVTVVIVKK 210 (360)
T ss_dssp SEETTTTEECSSCCCCCSSCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTTSCT-TCEEEEEEH
T ss_pred CCccccceeeeeccccceeeEEeecccccccc-----ccccccccceEEeeccccccC-CcceeeEec
Confidence 45667889999999999999999999987643 22333 56666666667543 334444433
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=3e-11 Score=114.05 Aligned_cols=200 Identities=11% Similarity=-0.006 Sum_probs=114.2
Q ss_pred ccccCCCCCcHHHHHHHhhHhhccCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCc--HHHHH
Q 016668 106 ELIASENFTSRAVMEAVGSCLTNKYSEGLPGK-RYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSG--SPANF 182 (385)
Q Consensus 106 ~Liasen~~s~~V~~al~s~l~~~y~~g~p~~-r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sG--s~A~~ 182 (385)
|..|++..+|++|++++...+.+.+..+..-. ..+-+.++. ++-+.+++.++++||++.+ ..|.+++| +.++.
T Consensus 4 nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~-~l~~~~r~~l~~l~~~~~~---~~v~~~~gs~t~~~~ 79 (360)
T d1bjna_ 4 NFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFI-QVAEEAEKDFRDLLNVPSN---YKVLFCHGGGRGQFA 79 (360)
T ss_dssp ECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHH-HHHHHHHHHHHHHHTCCTT---EEEEEESSHHHHHHH
T ss_pred EeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHH-HHHHHHHHHHHHHhCCCCC---CEEEEECCchHHHHh
Confidence 45678888999999999988765432221100 011234444 4444589999999999764 23444433 33666
Q ss_pred HHHHHhccCCCEEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEE--cCC
Q 016668 183 EVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIA--GAS 260 (385)
Q Consensus 183 ~a~~all~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~--~~s 260 (385)
++...+..++|.+++..- ++....+. ......+.......... ....|.+++++.+.. +++++.+ ..+
T Consensus 80 a~~~~~~~~~~~v~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~v~v~~~~~ 149 (360)
T d1bjna_ 80 AVPLNILGDKTTADYVDA---GYWAASAI---KEAKKYCTPNVFDAKVT---VDGLRAVKPMREWQL-SDNAAYMHYCPN 149 (360)
T ss_dssp HHHHHHCTTCCEEEEEES---SHHHHHHH---HHHTTTSEEEEEECEEE---ETTEEEECCGGGCCC-CSSCSCEEECSE
T ss_pred hhhhcccccccccceecc---cchhhhhH---HHHhhcCccceeecccc---CCCcchhhhhhhhcc-CCceeEEEeccc
Confidence 666677888998888752 22111110 11233343322222221 233444445554433 5555433 333
Q ss_pred CCCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC--CCcEEEECCCccCccccE-EEEEEeC
Q 016668 261 AYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK--YCDVVTTTTHKSLRGPRG-GMIFFKK 328 (385)
Q Consensus 261 ~~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~--gaDiv~~S~hK~l~Gprg-G~I~~~~ 328 (385)
.++...+++.+ .++.+++++++|.+++.+- .+++ .+|+.++|+||++.+|.| ++++..+
T Consensus 150 ~t~~~~~~~~i--~~~~~~~~v~vDa~~~~~~-------~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~ 211 (360)
T d1bjna_ 150 ETIDGIAIDET--PDFGADVVVAADFSSTILS-------RPIDVSRYGVIYAGAQKNIGPAGLTIVIVRED 211 (360)
T ss_dssp ETTTTEECCCC--CCCCTTCCEEEECTTTTTS-------SCCCGGGCSEEEEETTTTTSSTTCEEEEEEGG
T ss_pred ccccCccccce--ecccccceeeeeeeccccc-------eeeeeccceeEEEEcccccccCCCceeEeeeh
Confidence 34444444444 3567899999999865432 2343 789999999999977766 4444443
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=98.93 E-value=2.9e-08 Score=97.37 Aligned_cols=230 Identities=17% Similarity=0.097 Sum_probs=127.0
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
-+|.|.+++...+.+ ... . ..... .+..+.+.+.++++-.. ...+..||++|+..++... ...
T Consensus 69 ~hp~i~~ai~~~~~~-~~~--~----~~~~~----~~~~la~~~~~~~~~~~----~v~f~~sGseA~e~Alk~ar~~t~ 133 (427)
T d2gsaa_ 69 AHPEVIEALKVAMEK-GTS--F----GAPCA----LENVLAEMVNDAVPSIE----MVRFVNSGTEACMAVLRLMRAYTG 133 (427)
T ss_dssp TCHHHHHHHHHHHTT-CSC--C----SSCCH----HHHHHHHHHHHHSTTCS----EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHh-cCc--c----ccchh----HHHHHHHHHHhhCCccc----cccccCCcHHHHHHHHHHHHHhcC
Confidence 378888888777643 211 1 11222 23334456677765433 2346679999999998754 345
Q ss_pred CCEEeecCCCCCccccCCccccccccccCcceEEE--Ee------ccccCC---CCCCCHHHHHHHhhhc--CCcEEEEc
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFES--MP------YRLDES---TGLVDYDMLEKTAILF--RPKLIIAG 258 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~--i~------~~~~~~---~~~iD~d~le~~i~~~--~pklIi~~ 258 (385)
.++|+..+-.| ||.... .+...|..... .| .....+ ....|++.+++++++. +...||+.
T Consensus 134 r~~ii~~~~~y-----HG~t~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~E 206 (427)
T d2gsaa_ 134 RDKIIKFEGCY-----HGHADM--FLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILE 206 (427)
T ss_dssp CCEEEEETTCC-----CCSCGG--GCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEEC
T ss_pred CCeEEEEeccc-----ccCcce--eeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEc
Confidence 66788765433 332110 11111100000 00 000000 0146899999999753 23467776
Q ss_pred CC--CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCcc-ccEEEEEEeC
Q 016668 259 AS--AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKK 328 (385)
Q Consensus 259 ~s--~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~G-prgG~I~~~~ 328 (385)
+. ..|...+ +++|+++|+++|++||+|+.| .|+. .|... .-++ ..|+++.+ |.+.| -..|.+++++
T Consensus 207 pi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~r-~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~~ 282 (427)
T d2gsaa_ 207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVM-TGFR-IAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKR 282 (427)
T ss_dssp SSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTT-TBTT-TBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEECH
T ss_pred CCcCCCCCccCCHHHHHHHHHHHHHhceeeeecccc-ccce-ecccchHHhcCCCHHHHhhh--hccCCCcceeeeeehH
Confidence 42 1233333 899999999999999999998 5653 23211 1122 46888877 77743 3445566766
Q ss_pred CCCchhHHHHHHhhc--cCCCccCCChHHHHHHHHHHHHHhhCchHHHH
Q 016668 329 DPVLGVELESAINNA--VFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVY 375 (385)
Q Consensus 329 ~~~~~~~~~~~i~~~--~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y 375 (385)
++.+.+... .+.+..-+.++..+++..++|+.+.+++..+.
T Consensus 283 ------~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~ 325 (427)
T d2gsaa_ 283 ------EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEY 325 (427)
T ss_dssp ------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHH
T ss_pred ------HHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhh
Confidence 566655431 22222224555666666678888887776433
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.3e-08 Score=96.30 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=126.9
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc---
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK--- 190 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~--- 190 (385)
-+|.|.+|+.+.+.+ ... ....++ ++...+ +.+.+.++.+.+. .....|||+|+..++.....
T Consensus 58 ~~p~i~~Av~~q~~~-~~~--~~~~~~--~~~~~~----~~~~~~~~~~~~~-----v~~~~sGseA~e~Aik~ar~~~~ 123 (404)
T d2byla1 58 CHPKIVNALKSQVDK-LTL--TSRAFY--NNVLGE----YEEYITKLFNYHK-----VLPMNTGVEAGETACKLARKWGY 123 (404)
T ss_dssp TCHHHHHHHHHHHTT-CCC--CCTTEE--ESSHHH----HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh-CCC--cccccc--cchHHH----HHHhhhhcccccc-----cccccCccccchhHHHHHHHHhh
Confidence 478899998877643 221 111111 121222 3446777777754 35678999999999865421
Q ss_pred -------CCCEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCCCCCCCHHHHHHHhhhcC
Q 016668 191 -------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDESTGLVDYDMLEKTAILFR 251 (385)
Q Consensus 191 -------pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~~~~iD~d~le~~i~~~~ 251 (385)
.+.+|+...-.+ |+... ..+...+ ..+..++ ..|++++++.+...+
T Consensus 124 ~~~~~~~~~~~i~~~~~~~-----hg~t~--~~~~~~~~~~~~~~~~p~~~~~~~~p--------~~d~~~l~~~l~~~~ 188 (404)
T d2byla1 124 TVKGIQKYKAKIVFAAGNF-----WGRTL--SAISSSTDPTSYDGFGPFMPGFDIIP--------YNDLPALERALQDPN 188 (404)
T ss_dssp HTTCCCTTCCEEEEETTCC-----CCCSH--HHHTTCCCHHHHTTSCSCCTTEEEEC--------TTCHHHHHHHHTSTT
T ss_pred hccccccccccccccCCCc-----ccccc--ceeccCCCcccccCCCCCCCCeeEec--------ccCHHHHHHhcCCCC
Confidence 233566544221 22100 0001100 0011222 358899999986545
Q ss_pred CcEEEEcCC--CCCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCcc--cc
Q 016668 252 PKLIIAGAS--AYPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG--PR 320 (385)
Q Consensus 252 pklIi~~~s--~~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~G--pr 320 (385)
.-.|++.+. ..+. ..-+++|+++|+++|++||+|+.+ .|+.-.|... .-++ ..|+++.+ |.+.| ..
T Consensus 189 iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~-tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p 265 (404)
T d2byla1 189 VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIVLLG--KALSGGLYP 265 (404)
T ss_dssp EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSC
T ss_pred eEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccc-cccccccccchhhhcCCCCCEEEEC--chhhCCCcc
Confidence 556777642 1222 222899999999999999999998 5552223211 1122 35888655 99854 46
Q ss_pred EEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 321 GGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 321 gG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
.|.+++++ ++.+.+......+++++ ++...|+..++|+.+.++++.+..+
T Consensus 266 ~~av~~~~------~i~~~~~~~~~~~T~~g-npl~~aaa~a~L~~i~~~~l~~~~~ 315 (404)
T d2byla1 266 VSAVLCDD------DIMLTIKPGEHFSTYGG-NPLGCRVAIAALEVLEEENLAENAD 315 (404)
T ss_dssp CEEEEECH------HHHTTSCTTSSCCSSTT-CHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ceeeeech------hhhhccCCCCCCcCCCc-CHHHHHHHHHHHHHHHhcCchhhhh
Confidence 77788877 56665554433333433 4555666566888887766644443
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=98.72 E-value=2.7e-07 Score=89.13 Aligned_cols=220 Identities=17% Similarity=0.157 Sum_probs=118.1
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
.|.|.+++...+.+... .+. .+ .++...+ ..+++.+....... ...++.||++|+..++... ....
T Consensus 55 hp~v~~a~~~~~~~~~~--~~~--~~-~~~~~~~----la~~l~~~~~~~~~---~v~f~~sGseA~e~Aik~Ar~~t~r 122 (387)
T d1vefa1 55 NPEVVEAVKRQAETLMA--MPQ--TL-PTPMRGE----FYRTLTAILPPELN---RVFPVNSGTEANEAALKFARAHTGR 122 (387)
T ss_dssp CHHHHHHHHHHHHHCCC--CCT--TS-CCHHHHH----HHHHHHHTSCTTEE---EEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHhhcc--ccc--cc-CCchHHH----HHHHhhhhccccce---eeccccCchHHHHHHHHHHHhhccc
Confidence 68888888777654321 121 11 2232222 22334444333221 2356789999999998754 3445
Q ss_pred CEEeecCCCCCccccCCccccccccccCc------------ceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPKRRVSGTS------------IYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~~~~~~~g------------~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
.+|+...-.| ||+... .....+ ..+..+| ..|.+.|++.+.+ +.-.|++.+.
T Consensus 123 ~~ii~~~~~y-----HG~t~~--~~~~s~~~~~~~~~~p~~~~~~~~p--------~~d~~~l~~~~~~-~iAavi~EPi 186 (387)
T d1vefa1 123 KKFVAAMRGF-----SGRTMG--SLSVTWEPKYREPFLPLVEPVEFIP--------YNDVEALKRAVDE-ETAAVILEPV 186 (387)
T ss_dssp CEEEEETTCC-----CCSSHH--HHHTCCCHHHHGGGCSCSSCEEEEC--------TTCHHHHHHHCCT-TEEEEEECSE
T ss_pred ceecccccCC-----CCCccc--eEeccCCccccCCCCCCCCCceEeC--------CCCHHHHHHhcCC-CeEEEEEECC
Confidence 6777766433 222100 011111 0112222 2478999998864 5667777542
Q ss_pred --CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCcc-ccEEEEEEeCCC
Q 016668 261 --AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLRG-PRGGMIFFKKDP 330 (385)
Q Consensus 261 --~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~G-prgG~I~~~~~~ 330 (385)
..+...+ +++|+++|+++|+++|.|+.+ .|+.-.|... .-++ ..|+++.+ |.+.| -..+.++.++
T Consensus 187 ~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~-tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~~~-- 261 (387)
T d1vefa1 187 QGEGGVRPATPEFLRAAREITQEKGALLILDEIQ-TGMGRTGKRFAFEHFGIVPDILTLA--KALGGGVPLGVAVMRE-- 261 (387)
T ss_dssp ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEH--
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCceEEecccc-cccCccCCCcccccCCcCCceeeec--ccCCCCccccccccce--
Confidence 2232222 899999999999999999998 4542222211 1112 46888877 88843 3334455555
Q ss_pred CchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchH
Q 016668 331 VLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372 (385)
Q Consensus 331 ~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~ 372 (385)
++.+.+.......++++ ++-..++-.+.|+.+.++++
T Consensus 262 ----~~~~~~~~~~~g~T~~g-nPla~aaa~a~L~~l~~~~~ 298 (387)
T d1vefa1 262 ----EVARSMPKGGHGTTFGG-NPLAMAAGVAAIRYLERTRL 298 (387)
T ss_dssp ----HHHHTSCTTSSCCSSTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred ----eeeeccccCCccccCCC-Ccchhhhcccchhhcccccc
Confidence 34444433333333332 44555555557887766665
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=98.70 E-value=3.5e-07 Score=88.77 Aligned_cols=231 Identities=13% Similarity=0.064 Sum_probs=119.9
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhcc----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILK---- 190 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all~---- 190 (385)
+|.|.+|+.+.+.+ ....+. .. ....... +.+.+.++.+.+. ..+..||+.|+..++.....
T Consensus 57 ~p~v~~Ai~~q~~~-~~~~~~---~~-~~~~~~~----~~~~~~~~~~~~~-----v~~~~sgs~a~~~a~k~ar~~~~~ 122 (404)
T d1z7da1 57 HPNILNAMINQAKN-LTICSR---AF-FSVPLGI----CERYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGYE 122 (404)
T ss_dssp CHHHHHHHHHHHTT-CSCCCT---TS-EEHHHHH----HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh-CCCccc---cc-chHHHHH----HHHhhhhccccce-----eeeeccccchHHHHHHHHHHHHhh
Confidence 68888888776643 221111 11 1232233 3445677777654 35678999999887754321
Q ss_pred ------CCCEEeecCCCCCccccCCccccccccccCcce-EEEEeccccCCC---CCCCHHHHHHHhhhcCCcEEEEcCC
Q 016668 191 ------PHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIY-FESMPYRLDEST---GLVDYDMLEKTAILFRPKLIIAGAS 260 (385)
Q Consensus 191 ------pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~-~~~i~~~~~~~~---~~iD~d~le~~i~~~~pklIi~~~s 260 (385)
...+++...-.+ |+.... .....+.. +.....+..+.. ..-+.+.++..+...+.-.||+.+-
T Consensus 123 ~~~~~~~~~~~~~~~~~~-----hg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi 195 (404)
T d1z7da1 123 VKKIPENMAKIVVCKNNF-----SGRTLG--CISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPI 195 (404)
T ss_dssp TSCCCTTCCEEEEETTC---------------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECSS
T ss_pred cccccccccccccccccC-----CCCccc--ccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEEE
Confidence 122455443211 221100 00111100 000000000000 1236677777765545567777642
Q ss_pred --CCCCCCC----HHHHHHHHHHcCcEEEEeccccccccccCcc--cCCCC-CCcEEEECCCccCcc--ccEEEEEEeCC
Q 016668 261 --AYPRDFD----YPRMRQIADAVGALLMMDMAHISGLVAASVV--ADPFK-YCDVVTTTTHKSLRG--PRGGMIFFKKD 329 (385)
Q Consensus 261 --~~~~~~d----l~~I~~ia~~~ga~livD~ah~~Gli~~g~~--~~p~~-gaDiv~~S~hK~l~G--prgG~I~~~~~ 329 (385)
..+...+ +++|+++|+++|++||+|+.| .|+.-.|.. ..-++ ..|+++.+ |.+.| ...|.+++++
T Consensus 196 ~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~-tGfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~- 271 (404)
T d1z7da1 196 QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQ-TGLGRTGKLLCVHHYNVKPDVILLG--KALSGGHYPISAVLAND- 271 (404)
T ss_dssp BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECH-
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCc-cCCCcccccccccccCCCCCEEEEc--ccccCCCCCcccccchH-
Confidence 1222222 899999999999999999999 465322321 11222 46888665 99853 5778888887
Q ss_pred CCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHH
Q 016668 330 PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQ 376 (385)
Q Consensus 330 ~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~ 376 (385)
++.+.++......++++ ++...++-...|+.+.++++.+..
T Consensus 272 -----~i~~~~~~~~~~~T~~g-npl~~aaa~a~L~~~~~~~~~~~~ 312 (404)
T d1z7da1 272 -----DIMLVIKPGEHGSTYGG-NPLAASICVEALNVLINEKLCENA 312 (404)
T ss_dssp -----HHHTTCCTTCCCCTTTT-CHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred -----HHHccCCCCCcCcCCCC-Ccchhhhhhhhhhhhhcchhhhhh
Confidence 57666655544444443 444444545567766666554333
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=1.2e-06 Score=85.47 Aligned_cols=239 Identities=14% Similarity=-0.025 Sum_probs=122.0
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccC
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKP 191 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~p 191 (385)
-+|.|.+++...+.. +....+.. ..++ .+....+++.+++.-+..+ ......|||+|+..++... ...
T Consensus 57 ~~p~i~~ai~~q~~~-~~~~~~~~---~~~~----~~~~la~~l~~~~p~~~~~--~v~f~~sGseA~e~Alk~ar~~t~ 126 (425)
T d1sffa_ 57 LHPKVVAAVEAQLKK-LSHTCFQV---LAYE----PYLELCEIMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAATK 126 (425)
T ss_dssp TCHHHHHHHHHHTTT-CSCCCTTT---EECH----HHHHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhh-cCCccccc---ccCc----HHHHHHHHHHhhhhhcccc--eeeeeccccchhhhHHHHhhhhhc
Confidence 378999998876543 32221111 1122 2222455677887543211 2345688999999988654 334
Q ss_pred CCEEeecCCCCCccccCCcccccc-----------ccccCcceEEEEeccccCCCCCC--CHHHHHHHhh----hcCCcE
Q 016668 192 HDRIMGLDLPHGGHLSHGFMTPKR-----------RVSGTSIYFESMPYRLDESTGLV--DYDMLEKTAI----LFRPKL 254 (385)
Q Consensus 192 GD~Vl~~~~~~ggh~s~~~~~~~~-----------~~~~~g~~~~~i~~~~~~~~~~i--D~d~le~~i~----~~~pkl 254 (385)
..+|+...-.| ||+..... ............+++........ .....++... ..+...
T Consensus 127 r~~ii~~~~~y-----HG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaa 201 (425)
T d1sffa_ 127 RSGTIAFSGAY-----HGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAA 201 (425)
T ss_dssp CCEEEEETTCC-----CCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred ccceEeecCCC-----cCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEE
Confidence 56777765332 22210000 00000111112222221111110 0111112111 122446
Q ss_pred EEEcCC--CCCC-CC---CHHHHHHHHHHcCcEEEEeccccccccccCc--ccCCCC-CCcEEEECCCccCc-cccEEEE
Q 016668 255 IIAGAS--AYPR-DF---DYPRMRQIADAVGALLMMDMAHISGLVAASV--VADPFK-YCDVVTTTTHKSLR-GPRGGMI 324 (385)
Q Consensus 255 Ii~~~s--~~~~-~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~--~~~p~~-gaDiv~~S~hK~l~-GprgG~I 324 (385)
|++.+. +.+. .. -+++|+++|+++|++||+|+.++ |+.-.|. ...-++ ..|+++.+ |.+. |...|.+
T Consensus 202 vi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-G~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P~~av 278 (425)
T d1sffa_ 202 IVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFPLAGV 278 (425)
T ss_dssp EEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSCCEEE
T ss_pred EEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccc-cCCCcchhhHHHhcCCCccceecc--cccCCCcceEEE
Confidence 777642 2222 22 38999999999999999999985 5322222 112233 56888865 9984 4456777
Q ss_pred EEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 325 FFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
++++ ++.+.+.......+++ .++..++|...+|+.+.++++.+..+
T Consensus 279 ~~~~------~i~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~i~~~~~~~~~~ 324 (425)
T d1sffa_ 279 TGRA------EVMDAVAPGGLGGTYA-GNPIACVAALEVLKVFEQENLLQKAN 324 (425)
T ss_dssp EEEH------HHHTTSCTTSBCCSSS-SCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred EEcH------HHHHhhCCCCCCCCCC-cCHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 7877 5665554443333343 34455566566888887777644433
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=1.3e-05 Score=78.10 Aligned_cols=238 Identities=16% Similarity=0.078 Sum_probs=125.0
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHhc-----
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL----- 189 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~all----- 189 (385)
+|.|.+++...+.. ......+ .+ .++ ...++ .+++.+......+ ...+.+||++|+..++....
T Consensus 61 ~p~i~~Ai~~q~~~-~~~~~~~-~~--~~~---~~~~l-~~~l~~~~~~~~~---~v~f~~sGseA~e~A~k~ar~~~~~ 129 (429)
T d1s0aa_ 61 HPQLNAAMKSQIDA-MSHVMFG-GI--THA---PAIEL-CRKLVAMTPQPLE---CVFLADSGSVAVEVAMKMALQYWQA 129 (429)
T ss_dssp CHHHHHHHHHHHHH-CSCCCCS-SE--ECH---HHHHH-HHHHHHHSCTTCC---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh-cCCcccC-Cc--cch---HHHHH-HHHHHhhhccCcc---eeeeccccccchhhhhhhhhheeec
Confidence 78888888876643 2221111 11 122 22222 3456666655432 24567899999998876442
Q ss_pred --cCCCEEeecCCCCCccccCCccccc----------cc-cccCcceEEEEeccccCCCCCC---CHHHHHHHhhhc--C
Q 016668 190 --KPHDRIMGLDLPHGGHLSHGFMTPK----------RR-VSGTSIYFESMPYRLDESTGLV---DYDMLEKTAILF--R 251 (385)
Q Consensus 190 --~pGD~Vl~~~~~~ggh~s~~~~~~~----------~~-~~~~g~~~~~i~~~~~~~~~~i---D~d~le~~i~~~--~ 251 (385)
.++.+|+...-.+ ||..... .. ...........+.......... +.+++++.+... +
T Consensus 130 ~g~~~~~ii~~~~~y-----HG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (429)
T d1s0aa_ 130 KGEARQRFLTFRNGY-----HGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHE 204 (429)
T ss_dssp HTCCCCEEEEETTCC-----CCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTT
T ss_pred ccccccEEEEecCCc-----cccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCc
Confidence 2345788776433 2211000 00 0000001112222121112223 445555554432 3
Q ss_pred CcEEEEcCC--CCC-C-CC---CHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccC-cc-c
Q 016668 252 PKLIIAGAS--AYP-R-DF---DYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSL-RG-P 319 (385)
Q Consensus 252 pklIi~~~s--~~~-~-~~---dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l-~G-p 319 (385)
...|++.+. ..+ . .. -+++|+++|+++|++||+|+.+ .|+.-.|... ..++ ..|+++.+ |.+ .| .
T Consensus 205 iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~-tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~ 281 (429)
T d1s0aa_ 205 IAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIA-TGFGRTGKLFACEHAEIAPDILCLG--KALTGGTM 281 (429)
T ss_dssp EEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSS
T ss_pred cceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcc-ccccccccccccccceecccccccc--cccccccc
Confidence 456677642 222 1 11 2899999999999999999998 4542222211 1122 46888877 888 44 5
Q ss_pred cEEEEEEeCCCCchhHHHHHHhhcc----CCCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 320 RGGMIFFKKDPVLGVELESAINNAV----FPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 320 rgG~I~~~~~~~~~~~~~~~i~~~~----fp~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
..+.+++++ ++.+.+.... +.+.+-+.++..+++....|+.+.++++.+-++
T Consensus 282 p~~av~~~~------~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~ 337 (429)
T d1s0aa_ 282 TLSATLTTR------EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVA 337 (429)
T ss_dssp CCEEEEECH------HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cccchhhHH------HHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhh
Confidence 667778877 5777664321 111122345566666677888888877654433
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=98.43 E-value=7e-06 Score=79.90 Aligned_cols=235 Identities=12% Similarity=0.042 Sum_probs=116.1
Q ss_pred cHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCC
Q 016668 115 SRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPH 192 (385)
Q Consensus 115 s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pG 192 (385)
+|.|.+++.+.+.. ..+...+ + .. + ...+ ..+++.+++.-..+ ...+.+|||+|+..++... ....
T Consensus 59 ~p~v~~ai~~q~~~-~~~~~~~--~-~~-~---~~~~-la~~L~~~~~~~~~---~v~f~~sGseA~e~Alk~Ar~~t~r 126 (431)
T d1zoda1 59 HPEIVSVIGEYAGK-LDHLFSE--M-LS-R---PVVD-LATRLANITPPGLD---RALLLSTGAESNEAAIRMAKLVTGK 126 (431)
T ss_dssp CHHHHHHHHHHHHH-CCCCCTT--C-CC-H---HHHH-HHHHHHHHSCTTCC---EEEEESCHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhh-ccccccc--c-cc-H---HHHH-HHHHHHHhCCcccc---eeeecccccchHHHHHHHHHHhcCC
Confidence 68888888877653 3222111 1 11 2 2222 34456676632222 2356789999999998754 3456
Q ss_pred CEEeecCCCCCccccCCccccc---------c--ccccCcceEEEEecccc--CCC----CCCCHHH---HHHHhhhc--
Q 016668 193 DRIMGLDLPHGGHLSHGFMTPK---------R--RVSGTSIYFESMPYRLD--EST----GLVDYDM---LEKTAILF-- 250 (385)
Q Consensus 193 D~Vl~~~~~~ggh~s~~~~~~~---------~--~~~~~g~~~~~i~~~~~--~~~----~~iD~d~---le~~i~~~-- 250 (385)
++|+..+-.+ ||..... . .....+ ...++++.. +.. ...+.++ +...+...
T Consensus 127 ~~i~~~~~~y-----HG~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (431)
T d1zoda1 127 YEIVGFAQSW-----HGMTGAAASATYSAGRKGVGPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSS 199 (431)
T ss_dssp CEEEEETTCC-----CCSSHHHHHTCCSSCCSSSCCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCC
T ss_pred cceeeccccc-----ccccchhhcccccccccccCCcccC--ceeeeeecccccccccccchhhhhhHHHHHHHHHHhcc
Confidence 7777665332 2210000 0 000111 122222111 110 0122333 33333221
Q ss_pred -CCcEEEEcCC--CCCC----CCCHHHHHHHHHHcCcEEEEeccccccccccCccc--CCCC-CCcEEEECCCccCc-cc
Q 016668 251 -RPKLIIAGAS--AYPR----DFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA--DPFK-YCDVVTTTTHKSLR-GP 319 (385)
Q Consensus 251 -~pklIi~~~s--~~~~----~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~p~~-gaDiv~~S~hK~l~-Gp 319 (385)
+...|++.+. +.+. ..-+++|+++|+++|++||.|+.++ |+.-.|... .-+. ..|+++.+ |.+. |.
T Consensus 200 ~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~t-G~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~ 276 (431)
T d1zoda1 200 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTMFACQRDGVTPDILTLS--KTLGAGL 276 (431)
T ss_dssp SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTS
T ss_pred ccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccc-cccccccccccccCCCCcchhccc--ccccccc
Confidence 2345666542 1222 2238999999999999999999985 542222211 1112 46888876 8873 43
Q ss_pred cEEEEEEeCCCCchhHHHHHHhhccC-CCccCCChHHHHHHHHHHHHHhhCchHHHHHH
Q 016668 320 RGGMIFFKKDPVLGVELESAINNAVF-PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQN 377 (385)
Q Consensus 320 rgG~I~~~~~~~~~~~~~~~i~~~~f-p~~qg~p~~~~iaala~Al~e~~~~~~~~y~~ 377 (385)
..+.+++.+ ++.+......+ .+..-+.++...++...+++.+.+++..+...
T Consensus 277 p~~av~~~~------~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~ 329 (431)
T d1zoda1 277 PLAAIVTSA------AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARAN 329 (431)
T ss_dssp SCEEEEECH------HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ccceeeeee------cchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHH
Confidence 334455555 34444433322 22222345555556566777776666544433
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.32 E-value=2.2e-06 Score=83.88 Aligned_cols=157 Identities=17% Similarity=0.101 Sum_probs=100.3
Q ss_pred HHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHHHHh--ccCCCEEeecCCCCCccccCCccccccccccCcceEEEEe
Q 016668 151 TLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAI--LKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMP 228 (385)
Q Consensus 151 ~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~~al--l~pGD~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~ 228 (385)
-..+++++++.|.+. ++.++..|++|...++... ....+++++....|... |+. . ...+...|.++..++
T Consensus 111 ~e~q~~l~eltGmd~----~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~--~~v-~-~t~a~~~g~~vv~v~ 182 (437)
T d1wyua1 111 FEYQTMIAELAGLEI----ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEY--RAV-L-RAYLEAVGAKLLTLP 182 (437)
T ss_dssp HHHHHHHHHHHTSSE----ECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHH--HHH-H-HHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhhCCCc----cccCchHHHHHHHHHHHHHHhhhcccccccccccChHH--hhh-h-hhhcccceeeEEeee
Confidence 346789999999997 6889999998766655443 34567788766544322 221 1 012334565444443
Q ss_pred ccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCCCCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCc
Q 016668 229 YRLDESTGLVDYDMLEKTAILFRPKLIIAGASA-YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCD 306 (385)
Q Consensus 229 ~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~-~~~~~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaD 306 (385)
.+ ++..+.++ +.+ ++..|++.+|+ +|...|+++|.+++++.|+++++|..- ..+ +....|-+ |+|
T Consensus 183 --~~--~~~~~~~~----~~~-~~Aavmi~~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad~-~al---~~l~~Pg~~GaD 249 (437)
T d1wyua1 183 --LE--GGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADP-LSL---GVLKPPGAYGAD 249 (437)
T ss_dssp --CB--TTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCT-TGG---GTBCCHHHHTCS
T ss_pred --cc--cccchhhh----hcc-ceeEEEEccccccccccchHHHHHHhhhccceEEeeech-hhh---hccccccccccc
Confidence 43 22222222 222 45666666665 566779999999999999998888653 222 12234555 999
Q ss_pred EEEECCCccC------ccccEEEEEEeCC
Q 016668 307 VVTTTTHKSL------RGPRGGMIFFKKD 329 (385)
Q Consensus 307 iv~~S~hK~l------~GprgG~I~~~~~ 329 (385)
|++++ ||+| +||.+|++.++++
T Consensus 250 i~~g~-~q~fg~p~g~GGP~~G~~a~~~~ 277 (437)
T d1wyua1 250 IAVGD-GQSLGLPMGFGGPHFGFLATKKA 277 (437)
T ss_dssp EEEEE-CTTTTCCCGGGCSCCEEEEECGG
T ss_pred eEeec-cceeccccCCCcCccccccccch
Confidence 99888 6654 6677799999885
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.90 E-value=6.6e-05 Score=73.55 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=63.9
Q ss_pred HHHHHHHhhh-----cCCcEEEEcCCC--CCCC-CC---HHHHHHHHHHcCcEEEEeccccccccccCccc--C--CCC-
Q 016668 240 YDMLEKTAIL-----FRPKLIIAGASA--YPRD-FD---YPRMRQIADAVGALLMMDMAHISGLVAASVVA--D--PFK- 303 (385)
Q Consensus 240 ~d~le~~i~~-----~~pklIi~~~s~--~~~~-~d---l~~I~~ia~~~ga~livD~ah~~Gli~~g~~~--~--p~~- 303 (385)
++++++.+.. .+.-+|++.+.. .+.. .+ +++|+++|+++|++||+|+.+ .|+.-.|... . .++
T Consensus 232 ~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~-tG~gRtG~~~~~e~~gi~~ 310 (461)
T d1ohwa_ 232 LEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQ-TGGGSTGKFWAHEHWGLDD 310 (461)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTT-TCSSTTSSSSGGGGGCCSS
T ss_pred HHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccc-ccccccccccccccccccc
Confidence 4556655432 233467776432 1221 22 899999999999999999998 4543233211 1 112
Q ss_pred CCcEEEECCCccCccccEEEEEEeCCCCchhHHHHHHhhccCCCccCCChHHHHHHHHHHHHHhhCchHHH
Q 016668 304 YCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKV 374 (385)
Q Consensus 304 gaDiv~~S~hK~l~GprgG~I~~~~~~~~~~~~~~~i~~~~fp~~qg~p~~~~iaala~Al~e~~~~~~~~ 374 (385)
..|+++.+ |.+.| |++..... +... .......++++ ++...++...+|+.+.++++.+
T Consensus 311 ~PDiv~~g--K~l~~---g~~~~~~~------~~~~-~~~~~~~T~~g-~p~~~aaa~a~l~~i~~~~l~~ 368 (461)
T d1ohwa_ 311 PADVMTFS--KKMMT---GGFFHKEE------FRPN-APYRIFNTWLG-DPSKNLLLAEVINIIKREDLLS 368 (461)
T ss_dssp CCSEEEEC--GGGSS---EEEEECGG------GSCS-STTSSCCSCSS-CHHHHHHHHHHHHHHHHTTHHH
T ss_pred Cchhhhhh--hcccc---cccccccc------cccc-ccccccccccc-ccccchhhcccchhhhhhhHHH
Confidence 36888665 87643 44444331 1111 11112222322 3345555555777776666533
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| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=97.29 E-value=0.0011 Score=64.86 Aligned_cols=193 Identities=15% Similarity=0.137 Sum_probs=108.2
Q ss_pred CcHHHHHHHhhHhhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCcceeecCCcHHHHHHHH-HHh---c
Q 016668 114 TSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVY-TAI---L 189 (385)
Q Consensus 114 ~s~~V~~al~s~l~~~y~~g~p~~r~~~G~~~~~~le~~~~~~la~lfg~~~~~~~~~V~~~sGs~A~~~a~-~al---l 189 (385)
-.|.|.+.+.+.++ .|. -|......+|. .+.|- +.+..++++.|.|. +|.....|++|...++ ++. -
T Consensus 77 y~P~v~~~~~~~~T-aYT-PYQPaEiSQG~--LQalf-EfQtmi~eLTGMdv----aNaS~yDGatA~aeA~~ma~r~~~ 147 (471)
T d1wyub1 77 YNPKLHEEAARLFA-DLH-PYQDPRTAQGA--LRLMW-ELGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHE 147 (471)
T ss_dssp CCCHHHHHHHHTTS-SCC-TTSCGGGCHHH--HHHHH-HHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHh-ccC-CCCCHHHHHHH--HHHHH-HHHHHHHHHhCCCc----cccccchHHHHHHHHHHHHHHHhh
Confidence 35677777765432 221 23221122332 22222 25678999999997 5888888877554433 222 1
Q ss_pred cCCC----EEeecCCCCCccccCCccccccccccCcceEEEEeccccCCCCCCCHHHHHHHhhhcCCcEEEEcCCCC-CC
Q 016668 190 KPHD----RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY-PR 264 (385)
Q Consensus 190 ~pGD----~Vl~~~~~~ggh~s~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~iD~d~le~~i~~~~pklIi~~~s~~-~~ 264 (385)
+.|. .++...+.+..... ......+. +.+..+.+ +.+..|.+.+...... ....+++..+++ +.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~-~~a~v~v~~p~~~g~ 216 (471)
T d1wyub1 148 DRGEGRTRRVVLVPDSAHGSNP-------ATASMAGY--QVREIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNTLGL 216 (471)
T ss_dssp HTTCTTTCCEEEEETTSCTHHH-------HHHHHTTC--EEEEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCTTSC
T ss_pred hcccccccccccCCccccccee-------eeeecccc--eeeccccc-ccccccchhhhhhhhc-cccceeeccCCCccc
Confidence 2222 22222222211100 01122333 33333233 3568899998887754 455666665554 43
Q ss_pred C-CCHHHHHHHHHHcCcEEEEeccccccccccCcccCCCC-CCcEEEECCCccC------ccccEEEEEEeCC
Q 016668 265 D-FDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFK-YCDVVTTTTHKSL------RGPRGGMIFFKKD 329 (385)
Q Consensus 265 ~-~dl~~I~~ia~~~ga~livD~ah~~Gli~~g~~~~p~~-gaDiv~~S~hK~l------~GprgG~I~~~~~ 329 (385)
. .+.+++.+++++.|+.+++|.+....+. +.. .|-+ ++|+++...|++| +||..|++.++++
T Consensus 217 ~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~--~l~-~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~ 286 (471)
T d1wyub1 217 FERRILEISRLCKEAGVQLYYDGANLNAIM--GWA-RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH 286 (471)
T ss_dssp CCTTHHHHHHHHHHHTCEEEEEGGGGGGTT--TTC-CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG
T ss_pred ccchhhhhHHHHHhccccccccccchhhhh--hcc-ccCcccccccccccccccccccccccccccceeehhh
Confidence 3 3588999999999999999976532221 111 1222 7888888888875 4566688888885
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