Citrus Sinensis ID: 016670


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
MKEFFFYPFNYQKYILFFEKMRKNTSPVAQESDTMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTVTRRLHYHDPSWLGLAVPFSSSPSSSSSAAAAAAEEPLGLGVNERPGFLDEGAGLCDVFDGNWVWDDNYPLYRSSDCLFLDEGFRCLENGRPDNFYTKWRWQPKACNLPRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKGSLVFLFKDYNCTVEYYRSPFLVVQSRPPAKAPKEVRLTLKVDQLDWSSRKWRDADVLIFNTGHWWNFEKTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTYAPVHFRFSSTLFFSFCPKCPK
cccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHcccccccEEEcccccccccccEEEEEEcccEEEEEEEccccccccccccccccccEEEEccccccHHHHccccccEEEEEcccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccc
ccEEEEccccHHHHEHHHHHccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHcEEEEcccccccccccHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHcccccEEEEEcccccEccccEEEEEEEEccEEEEEEEccEEEEcccccccccccccEEEEEcHHHHccHHcccccEEEEEccEEEEccccEccccccccccEEcccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccc
mkefffypfnyQKYILFFEKMrkntspvaqesdtmtHLDFWKkfkrlnplepslgILGFILVAAIFIGCFFYldyrtvtrrlhyhdpswlglavpfssspsssssAAAAAaeeplglgvnerpgfldegaglcdvfdgnwvwddnyplyrssdclfldegfrclengrpdnfytkwrwqpkacnlprfDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAvtnkssiyevngepitkhkgsLVFLFKdynctveyyrspflvvqsrppakapkevRLTLKvdqldwssrkwrdaDVLIFNTGHWWNFEKTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTyapvhfrfsstlffsfcpkcpk
MKEFFFYPFNYQKYILFFEKMRKNTSPVAQESDTMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTVTRRLHYHDPSWLGLAVPFSSSPSSSSSAAAAAAEEPLGLGVNERPGFLDEGAGLCDVFDGNWVWDDNYPLYRSSDCLFLDEGFRCLENGRpdnfytkwrwqpkacnlpRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNgepitkhkgslVFLFKDYNCTVEYYRSPflvvqsrppakapkevrltlkvdqldwssrkwrdADVLIFntghwwnfekTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTYAPVHFRFSStlffsfcpkcpk
MKEFFFYPFNYQKYILFFEKMRKNTSPVAQESDTMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTVTRRLHYHDPSWLGLAVPFssspsssssaaaaaaEEPLGLGVNERPGFLDEGAGLCDVFDGNWVWDDNYPLYRSSDCLFLDEGFRCLENGRPDNFYTKWRWQPKACNLPRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKGSLVFLFKDYNCTVEYYRSPFLVVQSRPPAKAPKEVRLTLKVDQLDWSSRKWRDADVLIFNTGHWWNFEKTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTYAPVHFRFSSTLFFSFCPKCPK
***FFFYPFNYQKYILFFEKMR***********TMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTVTRRLHYHDPSWLGLAVP***********************VNERPGFLDEGAGLCDVFDGNWVWDDNYPLYRSSDCLFLDEGFRCLENGRPDNFYTKWRWQPKACNLPRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKGSLVFLFKDYNCTVEYYRSPFLVVQS********EVRLTLKVDQLDWSSRKWRDADVLIFNTGHWWNFEKTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTYAPVHFRFSSTLFFSFCP****
*KEFFFYPFNYQKYIL*************************KKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTVTR*****************************************************DVFDGNWVWDDNYPLYRSSDCLFLDEGFRCLENGRPDNFYTKWRWQPKACNLPRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKGSLVFLFKDYNCTVEYYRSPFLVVQSRPPAKAPKEVRLTLKVDQLDWSSRKWRDADVLIFNTGHWWNFEKTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTYAPVHFRFSSTLFF*FCP****
MKEFFFYPFNYQKYILFFEKMRKN*********TMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTVTRRLHYHDPSWLGLAVP*****************EPLGLGVNERPGFLDEGAGLCDVFDGNWVWDDNYPLYRSSDCLFLDEGFRCLENGRPDNFYTKWRWQPKACNLPRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKGSLVFLFKDYNCTVEYYRSPFLVVQSRPPAKAPKEVRLTLKVDQLDWSSRKWRDADVLIFNTGHWWNFEKTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTYAPVHFRFSSTLFFSFCPKCPK
MKEFFFYPFNYQKYILFFEKMR***********TMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTVTRR*************************************************GLCDVFDGNWVWDDNYPLYRSSDCLFLDEGFRCLENGRPDNFYTKWRWQPKACNLPRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKGSLVFLFKDYNCTVEYYRSPFLVVQSRPPAKAPKEVRLTLKVDQLDWSSRKWRDADVLIFNTGHWWNFEKTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTYAPVHFRFSSTLFFSFCPKC**
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKEFFFYPFNYQKYILFFEKMRKNTSPVAQESDTMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTVTRRLHYHDPSWLGLAVPFSSSPSSSSSAAAAAAEEPLGLGVNERPGFLDEGAGLCDVFDGNWVWDDNYPLYRSSDCLFLDEGFRCLENGRPDNFYTKWRWQPKACNLPRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKGSLVFLFKDYNCTVEYYRSPFLVVQSRPPAKAPKEVRLTLKVDQLDWSSRKWRDADVLIFNTGHWWNFEKTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTYAPVHFRFSSTLFFSFCPKCPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
255559482466 conserved hypothetical protein [Ricinus 0.877 0.725 0.675 1e-136
224066517 515 predicted protein [Populus trichocarpa] 0.862 0.644 0.599 1e-133
147772655463 hypothetical protein VITISV_010155 [Viti 0.841 0.699 0.65 1e-127
225436992460 PREDICTED: uncharacterized protein LOC10 0.833 0.697 0.649 1e-126
356570566461 PREDICTED: uncharacterized protein LOC10 0.870 0.726 0.618 1e-123
255552277453 conserved hypothetical protein [Ricinus 0.846 0.719 0.611 1e-121
224100341339 predicted protein [Populus trichocarpa] 0.862 0.979 0.611 1e-120
356503533459 PREDICTED: uncharacterized protein LOC10 0.870 0.729 0.594 1e-120
225432554446 PREDICTED: uncharacterized protein LOC10 0.849 0.733 0.6 1e-119
356572174452 PREDICTED: uncharacterized protein LOC10 0.849 0.723 0.584 1e-118
>gi|255559482|ref|XP_002520761.1| conserved hypothetical protein [Ricinus communis] gi|223540146|gb|EEF41723.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/348 (67%), Positives = 285/348 (81%), Gaps = 10/348 (2%)

Query: 23  KNTSPVAQESDTMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTVTRRL 82
            NTSP  Q+ DTMTH DF+KKFKRLNPLEPSLGILGF LVA +FIGCFFYLDYR+VT  +
Sbjct: 8   NNTSP--QDQDTMTHFDFFKKFKRLNPLEPSLGILGFFLVAILFIGCFFYLDYRSVTGGM 65

Query: 83  HYHDPSWLGLAVPFSSSPSSSSSAAAAAAEEPLGLGVNERPGFLDEGAGLCDVFDGNWVW 142
            +   SWLGL +    +PSSSSS++       LG   N RPGFLD+    CDVFDGNWVW
Sbjct: 66  PFRGFSWLGLGL---VTPSSSSSSSVVE----LG-SDNGRPGFLDKLGDGCDVFDGNWVW 117

Query: 143 DDNYPLYRSSDCLFLDEGFRCLENGRPDNFYTKWRWQPKACNLPRFDARNMLQKLRNRRL 202
           DD+YPLY+S +C F+D GFRCLENGRPD+FYTKWRWQP  C+LPRFD + ML++LRN RL
Sbjct: 118 DDSYPLYQSKNCSFIDSGFRCLENGRPDSFYTKWRWQPNHCDLPRFDPKLMLERLRNHRL 177

Query: 203 VFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKGSLVFLFKDYNCTVEYYRS 262
           VFVGDS+GRNQWESLLCMLA+A+ + SSIYEVNG PITKH+G L F+FKDYNCTVEYYR+
Sbjct: 178 VFVGDSVGRNQWESLLCMLATAIPDNSSIYEVNGSPITKHRGFLAFMFKDYNCTVEYYRA 237

Query: 263 PFLVVQSRPPAKAPKEVRLTLKVDQLDWSSRKWRDADVLIFNTGHWWNFEKTIREGCYFE 322
           PFL+ Q RPPA AP +V++TL++D+LDW+S +W +ADVLIFN+GHWWN+EKTIR GCYF+
Sbjct: 238 PFLLYQGRPPAGAPAKVKMTLRLDKLDWTSPQWINADVLIFNSGHWWNYEKTIRGGCYFQ 297

Query: 323 ERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTYAPVHFR 370
           E  E+K +M+VETA+ ++++TLI W+ S +N  KTQV FRTYAPVHFR
Sbjct: 298 EGEEVKMEMTVETAYRRSLQTLIDWMDSNINTSKTQVFFRTYAPVHFR 345




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066517|ref|XP_002302119.1| predicted protein [Populus trichocarpa] gi|222843845|gb|EEE81392.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147772655|emb|CAN62851.1| hypothetical protein VITISV_010155 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225436992|ref|XP_002272356.1| PREDICTED: uncharacterized protein LOC100249456 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356570566|ref|XP_003553456.1| PREDICTED: uncharacterized protein LOC100779356 [Glycine max] Back     alignment and taxonomy information
>gi|255552277|ref|XP_002517183.1| conserved hypothetical protein [Ricinus communis] gi|223543818|gb|EEF45346.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224100341|ref|XP_002311838.1| predicted protein [Populus trichocarpa] gi|222851658|gb|EEE89205.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356503533|ref|XP_003520562.1| PREDICTED: uncharacterized protein LOC100801125 [Glycine max] Back     alignment and taxonomy information
>gi|225432554|ref|XP_002280710.1| PREDICTED: uncharacterized protein LOC100261302 [Vitis vinifera] gi|297736996|emb|CBI26197.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356572174|ref|XP_003554245.1| PREDICTED: uncharacterized protein LOC100780433 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
TAIR|locus:2182157 464 TBL11 "TRICHOME BIREFRINGENCE- 0.867 0.719 0.565 6.3e-108
TAIR|locus:2080389 469 TBL10 "TRICHOME BIREFRINGENCE- 0.880 0.722 0.552 3.1e-106
TAIR|locus:2080767427 TBL8 "AT3G11570" [Arabidopsis 0.620 0.559 0.541 1.5e-74
TAIR|locus:2028533445 TBL7 "AT1G48880" [Arabidopsis 0.615 0.532 0.531 9.2e-68
TAIR|locus:2096094475 TBL6 "AT3G62390" [Arabidopsis 0.607 0.492 0.487 1.1e-62
TAIR|locus:2088659 556 TBL1 "AT3G12060" [Arabidopsis 0.612 0.424 0.447 7.3e-59
TAIR|locus:2149947485 TBL5 "AT5G20590" [Arabidopsis 0.615 0.488 0.460 1.9e-58
TAIR|locus:2036631541 TBL2 "AT1G60790" [Arabidopsis 0.612 0.436 0.427 9.6e-57
TAIR|locus:2170184 608 TBR [Arabidopsis thaliana (tax 0.612 0.388 0.438 2e-56
TAIR|locus:2155874 457 TBL4 "AT5G49340" [Arabidopsis 0.615 0.518 0.416 9.9e-55
TAIR|locus:2182157 TBL11 "TRICHOME BIREFRINGENCE-LIKE 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 199/352 (56%), Positives = 256/352 (72%)

Query:    21 MRKNTSPVAQESDTMTHLDFWKKFKRLNPL-EPSLGILGFILVAAIFIGCFFYLDYRTVT 79
             M KN S    E+  ++ +   K+FKRL  + EPSLG+LGF LV    +  FFYLDYRTV 
Sbjct:     1 MSKNPSQEEDEAMPISEVVI-KRFKRLRLVFEPSLGVLGFFLVGLCLVFSFFYLDYRTVA 59

Query:    80 RRLHYHDPSWLGLAVPFXXXXXXXXXXXXXXXEEPLGLGVNE-RPGFLDEGAGLCDVFDG 138
             +    HD S                       +E  G  VN  + GFL+E    CD+F+G
Sbjct:    60 KTKS-HDFS--------------DQSERFLWLKELDGFEVNNTKVGFLEESGNGCDLFNG 104

Query:   139 NWVWDDNYPLYRSSDCLFLDEGFRCLENGRPDNFYTKWRWQPKACNLPRFDARNMLQKLR 198
              WVWD++YPLY+S DC F+DEGFRC E GRPD FYTKWRWQP  C+LPRFDA+ ML+KLR
Sbjct:   105 KWVWDESYPLYQSKDCTFIDEGFRCTEFGRPDLFYTKWRWQPNHCDLPRFDAKLMLEKLR 164

Query:   199 NRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKGSLVFLFKDYNCTVE 258
             N+RLVFVGDSIGRNQWESLLCMLASA++NK+ +YEVN  PITKH G  VF F DYNCTVE
Sbjct:   165 NKRLVFVGDSIGRNQWESLLCMLASAISNKNLVYEVNNRPITKHMGFFVFRFHDYNCTVE 224

Query:   259 YYRSPFLVVQSRPPAKAPKEVRLTLKVDQLDWSSRKWRDADVLIFNTGHWWNFEKTIREG 318
             YYR+PFLV+QSRPP  +P++V+ TLK++ ++W++ KWRDAD+L+FNTGHWWN+EKTIR G
Sbjct:   225 YYRAPFLVLQSRPPEGSPEKVKTTLKLETMEWTADKWRDADILVFNTGHWWNYEKTIRGG 284

Query:   319 CYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRTYAPVHFR 370
             CYF+E  +++ +M +E A+ +A++T++ WI  +V+ +KTQV FRT+APVHFR
Sbjct:   285 CYFQEGEKVRMRMKIEHAYRRAMKTVMKWIQEEVDANKTQVFFRTFAPVHFR 336




GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2080389 TBL10 "TRICHOME BIREFRINGENCE-LIKE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080767 TBL8 "AT3G11570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028533 TBL7 "AT1G48880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096094 TBL6 "AT3G62390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149947 TBL5 "AT5G20590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036631 TBL2 "AT1G60790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170184 TBR [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155874 TBL4 "AT5G49340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 9e-68
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 2e-65
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 1e-26
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score =  214 bits (548), Expect = 9e-68
 Identities = 80/199 (40%), Positives = 110/199 (55%), Gaps = 15/199 (7%)

Query: 185 LPRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKG 244
           LPRFDA+  L++LR +R+VFVGDS+ RNQWESL+C+L+     K    E +G        
Sbjct: 1   LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDG-------R 53

Query: 245 SLVFLFKDYNCTVEYYRSPFLVVQSRPPAKAPKEVRLTLKVDQLD-WSSRKWRDADVLIF 303
              F FKDYN T+E+Y SPFLV          +E +  LK+D +D   S+ W  ADVL+F
Sbjct: 54  LFRFRFKDYNVTIEFYWSPFLVES-----DNAEEGKRVLKLDSIDEKWSKLWPGADVLVF 108

Query: 304 NTGHWWNFEKTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRT 363
           N+GHWW   K      Y ++     K+M    A+ KA+ET   W+   +   KT+V FRT
Sbjct: 109 NSGHWWLHRKVYIGWDYCQKSNY--KEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFRT 166

Query: 364 YAPVHFRFSSTLFFSFCPK 382
           ++PVHF          C +
Sbjct: 167 FSPVHFEGGEWNTGGSCYE 185


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 385
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 99.95
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 97.36
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=6.5e-87  Score=669.93  Aligned_cols=247  Identities=38%  Similarity=0.791  Sum_probs=224.4

Q ss_pred             CCCCCCCCCcCccceeeeCCCCCCcCCCCCC-CcccCcccccCCCCCCcCceeeeecCCCCCCCcCHHHHHHHhcCCcEE
Q 016670          125 FLDEGAGLCDVFDGNWVWDDNYPLYRSSDCL-FLDEGFRCLENGRPDNFYTKWRWQPKACNLPRFDARNMLQKLRNRRLV  203 (385)
Q Consensus       125 ~~~~~~~~CDlf~G~WV~D~s~PlY~~~~Cp-~I~~~~nC~~nGRPD~~Yl~WRWQP~gC~LPrFd~~~FLe~LRgKria  203 (385)
                      .++++.+.||+|+|+||+|+++|||++++|| ||+++|||++|||||++|++|||||++|+||||||.+||++|||||||
T Consensus        45 ~~~~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~  124 (387)
T PLN02629         45 SLQANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVM  124 (387)
T ss_pred             CCCCCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEE
Confidence            4566788999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             EEecchhHHHHHHHHHhhhhccCCCcceEeecCCccccccccEEEEEeeccEEEEEEeccceeecCCCCCCCCCceeEEE
Q 016670          204 FVGDSIGRNQWESLLCMLASAVTNKSSIYEVNGEPITKHKGSLVFLFKDYNCTVEYYRSPFLVVQSRPPAKAPKEVRLTL  283 (385)
Q Consensus       204 FVGDSl~RNq~eSLlCLL~~~~p~~~~~~~~~g~~~~k~~~~~~~~f~~yN~TV~fyWSPFLV~~~~~~~~~~~~~~~~l  283 (385)
                      ||||||+|||||||+|||++++|+..+..       .++.++.+|+|++||+||+||||||||+.+...      ..+.|
T Consensus       125 FVGDSL~RNQ~eSLvClL~~~~p~~~~~~-------~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~------~~~~l  191 (387)
T PLN02629        125 FVGDSLGRNQWESLICLISSSVPSTRTQM-------SRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQ------GKRVL  191 (387)
T ss_pred             EeccccchhHHHHHHHHhhccCCCCceee-------ecCCceEEEEeccCCEEEEEEecceEEeeecCC------CceeE
Confidence            99999999999999999999988643222       223345799999999999999999999865321      23579


Q ss_pred             eecccchhcccCCCccEEEEeccccccccccccceeeeccCCccccccCHHHHHHHHHHHHHHHHHhccCCCCceEEEEe
Q 016670          284 KVDQLDWSSRKWRDADVLIFNTGHWWNFEKTIREGCYFEERGELKKKMSVETAFEKAIETLIHWIGSQVNMDKTQVLFRT  363 (385)
Q Consensus       284 ~LD~id~~~~~w~~~DVLVfNtGhWw~~~k~~~~g~~f~~g~~v~~~m~~~~Ayr~ALrt~~~wi~~~~d~~kt~VFfRT  363 (385)
                      +||+++..+..|+++|||||||||||.+.+..+++++++.|..+.++|++.+||++||+||++||++++++.+++|||||
T Consensus       192 ~LD~id~~a~~w~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT  271 (387)
T PLN02629        192 KLEEISGNANAWRDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQS  271 (387)
T ss_pred             EecCcchhhhhhccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence            99999977889999999999999999999888888888889888899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcCCCCcCC--CCC
Q 016670          364 YAPVHFRFSSTLFFSFCP--KCP  384 (385)
Q Consensus       364 ~SP~HFegGdW~~~g~C~--~~~  384 (385)
                      +||+||+||+||+||+|.  +|.
T Consensus       272 ~SP~Hfe~g~Wn~gg~~~~~~C~  294 (387)
T PLN02629        272 ISPTHYNPSEWSAGASTTTKNCY  294 (387)
T ss_pred             cCcccccCCCcCCCCCCCCCCCc
Confidence            999999999999999884  463



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 86.72
d3bzwa1248 Uncharacterized protein BT2961 {Bacteroides thetai 85.88
d1pvva2163 Ornithine transcarbamoylase {Archaeon Pyrococcus f 83.83
d1otha2170 Ornithine transcarbamoylase {Human (Homo sapiens) 80.24
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein Lp3323
species: Lactobacillus plantarum [TaxId: 1590]
Probab=86.72  E-value=0.1  Score=42.53  Aligned_cols=15  Identities=33%  Similarity=0.554  Sum_probs=12.9

Q ss_pred             hcCCcEEEEecchhH
Q 016670          197 LRNRRLVFVGDSIGR  211 (385)
Q Consensus       197 LRgKriaFVGDSl~R  211 (385)
                      +..|||+|+|||++-
T Consensus         2 ~~~kri~~iGDSit~   16 (207)
T d3dc7a1           2 VSFKRPAWLGDSITA   16 (207)
T ss_dssp             BCCSSEEEEESTTTS
T ss_pred             CCCCEEEEEehHhhc
Confidence            457999999999984



>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure