Citrus Sinensis ID: 016703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKVSI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEEcccccccEEEEEcccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccccccccEEEEEEcccccccEEEEEcccccHHHcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHccccccHHHHHHHHHHHEccc
Coil and Loop (DISEMBL)
mdyqlsdssgtdddlppshhnrfqrgvrptgngrsavigsaslprmqndmATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRkasglqpgmpsipqpvhdpapsptvsasrkktktsqsvaslstgapspgmhpsvqpsssalrpgpppgskgkkpksfstglagrgqvanrgssgafpangpseaatynpligrkvwtrwpednhfyeavitdynpnegrhaLVYDINTADETWewvnlkeispedikwegdepgisrkggrpgpgrgtkkpltrgggvsgagrgrgtmkpkkgfpfsqngigkkplgdieILHTETLIKEVEKVFaanhpdptdvEKAKRVLKVSI
Flexible Loop (DISEMBL)
mdyqlsdssgtdddlppshhnrfqrgvrptgngRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRkelrvsdeehrellskvnaddiiLRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSasrkktktsqsvaslstgapspgmhPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNlkeispedikwegdepgisrkggrpgpgrgtkkpltrgggvsgagrgrgtmkpkkgfpfsqngigkkplGDIEILHTETLIKEVEKVfaanhpdptdvekakrVLKVSI
Low Complexity Region (SEG)
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRpgpppgskgkkpksFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISrkggrpgpgrgtkkpLTrgggvsgagrgrgTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKVSI
Disordered region (IsUnstruct)
*************************************************************YSSVLRAFKAQSDAITWEKESLITELRK***********LLSKVNADDIILRIREWR*********************************************************************************************************TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP*************************************************************PLGDIEILHTETLIKEVEKVFA********************
Disordered Region (DISOPRED)
*****************************************************IHSVEQDAYSSVLRAFKAQSD****E***LITELRKELRV*************************************************************************************************************************************PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE********************************************************************HTETLIKEVEK************EKAKRVLKVS*
Disordered Region (DISEMBL)
****************PSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQP***************************************************************TGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKVSI
Disordered Region (DISPRO)
*************DLPPSH********************SASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA*******************************************************************************************************TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPG**************************************************PLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKVSI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLxxxxxxxxxxxxxxxxxxxxxVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKVSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
224057174	399	predicted protein [Populus trichocarpa]	0.968	0.932	0.757	1e-158
297746393	446	unnamed protein product [Vitis vinifera]	0.986	0.849	0.723	1e-156
225435596	449	PREDICTED: uncharacterized protein LOC10	0.986	0.844	0.718	1e-155
255544742	402	conserved hypothetical protein [Ricinus	0.966	0.922	0.759	1e-151
30684221	397	Emsy N Terminus and plant Tudor-like dom	0.955	0.924	0.689	1e-140
7630058	414	putative protein [Arabidopsis thaliana]	0.955	0.886	0.689	1e-140
449502209	418	PREDICTED: uncharacterized protein LOC10	0.986	0.906	0.682	1e-139
449462597	418	PREDICTED: uncharacterized protein LOC10	0.986	0.906	0.679	1e-139
359487460	424	PREDICTED: uncharacterized protein LOC10	0.973	0.882	0.672	1e-138
297741224	433	unnamed protein product [Vitis vinifera]	0.973	0.863	0.657	1e-138

>gi|224057174|ref|XP_002299156.1| predicted protein [Populus trichocarpa] gi|222846414|gb|EEE83961.1| predicted protein [Populus trichocarpa]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/384 (75%), Positives = 321/384 (83%), Gaps = 12/384 (3%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+LSDSSGTDDDLPP+H NRFQ G R  GNGRSAV G+AS PR+ +DM TQIH++EQ+
Sbjct: 1   MDYELSDSSGTDDDLPPTHRNRFQSGARTAGNGRSAVGGAASQPRLHSDMETQIHNIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AY+SVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL++VNADD+I RIREWRKA
Sbjct: 61  AYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLARVNADDMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +G+QP MPS  QP HDP PSPTVS SRKK KTSQSVASLS   PSP +HPS+QPS+SALR
Sbjct: 121 NGIQPSMPSTAQPSHDPIPSPTVSGSRKKQKTSQSVASLSMVVPSPVLHPSMQPSTSALR 180

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPGS  KKPKS  STGL+ R Q ANRGSSG F  N          LIG+KVWTRWPE
Sbjct: 181 HGPPPGSGNKKPKSQRSTGLSSRAQAANRGSSGVFATND---------LIGKKVWTRWPE 231

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DNHFYEAVITDYNP EGRHALVYDINT DETWEWVNLKEISPEDI+WEG+EPG+ R+GGR
Sbjct: 232 DNHFYEAVITDYNPVEGRHALVYDINTGDETWEWVNLKEISPEDIRWEGEEPGLFRRGGR 291

Query: 300 PGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PGPGRG KK + RGG V  AGRGRGT K   KK FP  QNGIGKK +GDIEILHT TLIK
Sbjct: 292 PGPGRGNKKAIARGGAVVTAGRGRGTTKGQSKKDFPLIQNGIGKKAMGDIEILHTNTLIK 351

Query: 358 EVEKVFAANHPDPTDVEKAKRVLK 381
           EVEKVF A+HPDP ++EKAK+ L+
Sbjct: 352 EVEKVFGASHPDPLEIEKAKKALE 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746393|emb|CBI16449.3| unnamed protein product [Vitis vinifera]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/384 (72%), Positives = 312/384 (81%), Gaps = 5/384 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY LSDSSGTDDDLPPSH NRF RG R +GNGRS V+GSA  PRM  DM  QIH +EQ+
Sbjct: 1   MDYGLSDSSGTDDDLPPSHQNRFSRGGRASGNGRSGVLGSAPFPRMHGDMEAQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNADDII  IREWRK 
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIRSIREWRKG 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
            GLQ GM +  QPVH+  PSPTVSASRKK KTSQS+ASLS GAPSP +HP++QPSSSAL+
Sbjct: 121 GGLQHGMAA--QPVHESIPSPTVSASRKKQKTSQSIASLSLGAPSPALHPTMQPSSSALK 178

Query: 181 PGPPPGSKGKKPKSF-STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
             P P SK KK K + S GL GR Q+ANRGSSGAF  N  +E  TY+PLIG+KVWTRWPE
Sbjct: 179 HAPTPRSKSKKTKPYPSAGLTGRPQLANRGSSGAFVGNEAAEGTTYDPLIGKKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DNHFYEAVITDYNP EGRHALVYDINT +ETWEWVNLKEISPEDI+WEGDE G+SR+G R
Sbjct: 239 DNHFYEAVITDYNPVEGRHALVYDINTTNETWEWVNLKEISPEDIRWEGDESGMSRRGSR 298

Query: 300 PGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PGPGRG KK + RGG V+GAGRGRGT K   KK FP SQNG+ KK    +EI +T++LIK
Sbjct: 299 PGPGRGMKKSMARGGAVTGAGRGRGTPKGQSKKVFPPSQNGLEKKDDSSLEIYNTDSLIK 358

Query: 358 EVEKVFAANHPDPTDVEKAKRVLK 381
           EVE+V    +PD   + + K++LK
Sbjct: 359 EVERVVTTANPDSVQILEVKKMLK 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435596|ref|XP_002285615.1| PREDICTED: uncharacterized protein LOC100257061 [Vitis vinifera]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/387 (71%), Positives = 311/387 (80%), Gaps = 8/387 (2%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY LSDSSGTDDDLPPSH NRF RG R +GNGRS V+GSA  PRM  DM  QIH +EQ+
Sbjct: 1   MDYGLSDSSGTDDDLPPSHQNRFSRGGRASGNGRSGVLGSAPFPRMHGDMEAQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNADDII  IREWRK 
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIRSIREWRKG 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
            GLQ GM +  QPVH+  PSPTVSASRKK KTSQS+ASLS GAPSP +HP++QPSSSAL+
Sbjct: 121 GGLQHGMAA--QPVHESIPSPTVSASRKKQKTSQSIASLSLGAPSPALHPTMQPSSSALK 178

Query: 181 PGPPPGSKGKKPKSF----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTR 236
             P P SK KK K      S GL GR Q+ANRGSSGAF  N  +E  TY+PLIG+KVWTR
Sbjct: 179 HAPTPRSKSKKTKPSMQYPSAGLTGRPQLANRGSSGAFVGNEAAEGTTYDPLIGKKVWTR 238

Query: 237 WPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRK 296
           WPEDNHFYEAVITDYNP EGRHALVYDINT +ETWEWVNLKEISPEDI+WEGDE G+SR+
Sbjct: 239 WPEDNHFYEAVITDYNPVEGRHALVYDINTTNETWEWVNLKEISPEDIRWEGDESGMSRR 298

Query: 297 GGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTET 354
           G RPGPGRG KK + RGG V+GAGRGRGT K   KK FP SQNG+ KK    +EI +T++
Sbjct: 299 GSRPGPGRGMKKSMARGGAVTGAGRGRGTPKGQSKKVFPPSQNGLEKKDDSSLEIYNTDS 358

Query: 355 LIKEVEKVFAANHPDPTDVEKAKRVLK 381
           LIKEVE+V    +PD   + + K++LK
Sbjct: 359 LIKEVERVVTTANPDSVQILEVKKMLK 385

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544742|ref|XP_002513432.1| conserved hypothetical protein [Ricinus communis] gi|223547340|gb|EEF48835.1| conserved hypothetical protein [Ricinus communis]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/379 (75%), Positives = 324/379 (85%), Gaps = 8/379 (2%)

Query: 9   SGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRA 68
           +GTDDDLPPSH NRFQ GVRP GNGRS  +GS S+PR+ +DM TQIH++EQ+AY+SVLRA
Sbjct: 2   AGTDDDLPPSHRNRFQSGVRPAGNGRSTAVGSTSIPRLHSDMETQIHNIEQEAYTSVLRA 61

Query: 69  FKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMP 128
           FKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VN+DDII RIREWRK +GLQPGMP
Sbjct: 62  FKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNSDDIIRRIREWRKTNGLQPGMP 121

Query: 129 SIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSK 188
           S  QP HDP+PSPTVSAS KK KTSQSVASLS GAPSP + PS+QPSSSA R GPPPG +
Sbjct: 122 STAQPAHDPSPSPTVSASHKKQKTSQSVASLSMGAPSPAL-PSMQPSSSAFRRGPPPGPR 180

Query: 189 GKKPKSF----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFY 244
            KKPKS     S GL GR Q ANR SSGAF AN P+EA +Y+ LIGRKVWTRWPEDNHFY
Sbjct: 181 SKKPKSSMQYPSAGLTGRAQAANRSSSGAFAANEPAEATSYD-LIGRKVWTRWPEDNHFY 239

Query: 245 EAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGR 304
           EAVITDY P EGRHALVYDINTADETWEWVNLKEISPEDI+W+ ++ G+ R+GGRPGPGR
Sbjct: 240 EAVITDYKPAEGRHALVYDINTADETWEWVNLKEISPEDIRWKDEDQGVFRRGGRPGPGR 299

Query: 305 GTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKV 362
           G KK +  GGG+ GAGRGRGTMK   +K FP +QNGIG+K L DIEILHT+TLIKEVEKV
Sbjct: 300 GNKKSMAHGGGLGGAGRGRGTMKGQSRKEFPLAQNGIGRKALDDIEILHTDTLIKEVEKV 359

Query: 363 FAANHPDPTDVEKAKRVLK 381
           F+ANH DP ++EKAK+VL+
Sbjct: 360 FSANHADPMEIEKAKKVLQ 378

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684221|ref|NP_196806.2| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana] gi|332004459|gb|AED91842.1| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/387 (68%), Positives = 312/387 (80%), Gaps = 20/387 (5%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct: 1   MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct: 61  AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct: 121 NSLQ---SSVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query: 181 PGPPPGSKGKKPKSF-----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWT 235
            G PP     K         STG+AGR Q      +GA   N P E+ +Y+PL+GRKVWT
Sbjct: 177 RGGPPPGPKTKKPKTSMQYPSTGIAGRPQ------AGAL-TNEPGESGSYDPLVGRKVWT 229

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR 295
           +WP+DN +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGISR
Sbjct: 230 KWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISR 289

Query: 296 KGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTET 354
           KGG PG GRGTK  + RGG  S A GRGRG+M+ ++  P +QNGIGKK LG+IEILHTET
Sbjct: 290 KGGHPGQGRGTKT-MARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTET 346

Query: 355 LIKEVEKVFAANHPDPTDVEKAKRVLK 381
           L+KEVEKVF + +P+P +VEKAKRVL+
Sbjct: 347 LLKEVEKVFGSVNPNPAEVEKAKRVLR 373

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7630058|emb|CAB88266.1| putative protein [Arabidopsis thaliana]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/387 (68%), Positives = 312/387 (80%), Gaps = 20/387 (5%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct: 1   MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct: 61  AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct: 121 NSLQ---SSVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query: 181 PGPPPGSKGKKPKSF-----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWT 235
            G PP     K         STG+AGR Q      +GA   N P E+ +Y+PL+GRKVWT
Sbjct: 177 RGGPPPGPKTKKPKTSMQYPSTGIAGRPQ------AGAL-TNEPGESGSYDPLVGRKVWT 229

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR 295
           +WP+DN +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGISR
Sbjct: 230 KWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISR 289

Query: 296 KGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTET 354
           KGG PG GRGTK  + RGG  S A GRGRG+M+ ++  P +QNGIGKK LG+IEILHTET
Sbjct: 290 KGGHPGQGRGTKT-MARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTET 346

Query: 355 LIKEVEKVFAANHPDPTDVEKAKRVLK 381
           L+KEVEKVF + +P+P +VEKAKRVL+
Sbjct: 347 LLKEVEKVFGSVNPNPAEVEKAKRVLR 373

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502209|ref|XP_004161575.1| PREDICTED: uncharacterized protein LOC101228708 [Cucumis sativus]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 262/384 (68%), Positives = 295/384 (76%), Gaps = 5/384 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           M+Y+ SDSSGTDDDLPP H +RFQRG  P GNGRSA + S++LPRM  DM  QIH +EQ+
Sbjct: 1   MEYEPSDSSGTDDDLPPPHQSRFQRGGLPAGNGRSAPVNSSALPRMLGDMEMQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR+LLS+VNADD+I RIREWR A
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRKLLSRVNADDVIKRIREWRTA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +GLQPG  +  QP+ DP PSPT SASRKK KTSQ  ASLS GAP+P M  ++ PSSS LR
Sbjct: 121 NGLQPGKLNSDQPMADPVPSPTASASRKKQKTSQ--ASLSQGAPTPAMPTTIPPSSSTLR 178

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPG++  K KS   TG  G  QV NRGS GAF +N  +E   + PLIGRKVWTRWPE
Sbjct: 179 RGPPPGARTTKTKSAMHTGPTGSAQVNNRGSLGAFASNENAEGVNHEPLIGRKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DN FYEAVITDYN  EGRHALVYDINTA ETWEWVNLKEISPEDI+WE +     R G R
Sbjct: 239 DNSFYEAVITDYNHAEGRHALVYDINTAHETWEWVNLKEISPEDIRWEREVSAALRGGAR 298

Query: 300 PGPGRGTKKPLT--RGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PG GRG KK +T        G GRG    + ++  P SQNG  K+P GDIEILHT+TLIK
Sbjct: 299 PGHGRGNKKSMTRGGAVAAGGRGRGTTKGQSRRDLPVSQNGSRKQPTGDIEILHTDTLIK 358

Query: 358 EVEKVFAANHPDPTDVEKAKRVLK 381
           EVEKVF AN PDP ++EKAK+VLK
Sbjct: 359 EVEKVFGANQPDPMEIEKAKKVLK 382

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462597|ref|XP_004149027.1| PREDICTED: uncharacterized protein LOC101218087 [Cucumis sativus]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/384 (67%), Positives = 295/384 (76%), Gaps = 5/384 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           M+Y+ SDSSGTDDDLPP H +RFQRG  P GNGRSA + S++LPRM  DM  QIH +EQ+
Sbjct: 1   MEYEPSDSSGTDDDLPPPHQSRFQRGGLPAGNGRSAPVNSSALPRMLGDMEMQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR+LLS+VNADD+I RIREWR A
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRKLLSRVNADDVIKRIREWRTA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +GLQPG  +  QP+ DP PSPT SASRKK KTSQ  ASLS GAP+P M  ++ PSSS LR
Sbjct: 121 NGLQPGKLNSDQPMADPVPSPTASASRKKQKTSQ--ASLSQGAPTPAMPTTIPPSSSTLR 178

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPG++  K KS   TG  G  QV NRGS GAF +N  +E   + PLIGRKVWTRWPE
Sbjct: 179 RGPPPGARTTKTKSAMHTGPTGSAQVNNRGSLGAFASNENAEGVNHEPLIGRKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DN FYEAVITDYN  EGRHALVYDINTA ETWEWVNLKEISPEDI+WE +     R G R
Sbjct: 239 DNSFYEAVITDYNHAEGRHALVYDINTAHETWEWVNLKEISPEDIRWEREVSAALRGGAR 298

Query: 300 PGPGRGTKKPLT--RGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PG GRG +K +T        G GRG    + ++  P SQNG  K+P GDIEILHT+TLIK
Sbjct: 299 PGHGRGNRKSMTRGGAVAAGGRGRGTTKGQSRRDLPVSQNGSRKQPTGDIEILHTDTLIK 358

Query: 358 EVEKVFAANHPDPTDVEKAKRVLK 381
           EVEKVF AN PDP ++EKAK+VLK
Sbjct: 359 EVEKVFGANQPDPMEIEKAKKVLK 382

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487460|ref|XP_002273408.2| PREDICTED: uncharacterized protein LOC100263217 [Vitis vinifera]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/394 (67%), Positives = 303/394 (76%), Gaps = 20/394 (5%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRM--QNDMATQIHSVE 58
           MDY+  DSSGTDDDLPP H NR  RG R  GNGRSAV+GS    RM  + DM TQIH +E
Sbjct: 1   MDYEPFDSSGTDDDLPPPHQNRIPRGGRVAGNGRSAVVGSIPYSRMYGETDMETQIHQLE 60

Query: 59  QDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118
           Q+AYSSVLRAFKAQ+DAITWEKESLITELRKELR+S+EEHRELL +VNADD+I RIREWR
Sbjct: 61  QEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVNADDVIRRIREWR 120

Query: 119 KASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHP-----SVQ 173
           +A GLQPGM +  Q VHDP PSPTVSASRKK K +QS+ S S G PS   HP     S Q
Sbjct: 121 QAGGLQPGMLTTGQAVHDPIPSPTVSASRKKQKITQSIPSQSFGGPSQSFHPQAIAASNQ 180

Query: 174 PSSSALRPGPPPGSKGKKPKS----FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLI 229
           PSSSA + GP  G KGKK KS     S+G  GRGQVANRG       N P+EAAT++PLI
Sbjct: 181 PSSSAAKRGPILGPKGKKHKSSMQYASSGPTGRGQVANRG------VNEPAEAATFDPLI 234

Query: 230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGD 289
           GRKV TRWP+DN+FYEAVITDYNP EGRHALVYD+ +A+ETWEWVNL EISPEDI+W+G+
Sbjct: 235 GRKVRTRWPDDNNFYEAVITDYNPVEGRHALVYDMGSANETWEWVNLSEISPEDIQWDGE 294

Query: 290 EPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDI 347
           +PGISR+GG  G G G  + + R   V GAGRGRG  K   KK F  SQNGIGKK   DI
Sbjct: 295 DPGISRRGGYDGSGHGMNRAVGR-DSVQGAGRGRGLPKGQSKKDFLPSQNGIGKKAPDDI 353

Query: 348 EILHTETLIKEVEKVFAANHPDPTDVEKAKRVLK 381
           +ILHT+TLIKEVE+VF ANHPDP +++KAK+VLK
Sbjct: 354 QILHTDTLIKEVERVFTANHPDPLEIDKAKKVLK 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741224|emb|CBI32175.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/403 (65%), Positives = 303/403 (75%), Gaps = 29/403 (7%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRM--QNDMATQIHSVE 58
           MDY+  DSSGTDDDLPP H NR  RG R  GNGRSAV+GS    RM  + DM TQIH +E
Sbjct: 1   MDYEPFDSSGTDDDLPPPHQNRIPRGGRVAGNGRSAVVGSIPYSRMYGETDMETQIHQLE 60

Query: 59  QDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118
           Q+AYSSVLRAFKAQ+DAITWEKESLITELRKELR+S+EEHRELL +VNADD+I RIREWR
Sbjct: 61  QEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVNADDVIRRIREWR 120

Query: 119 KASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHP-----SVQ 173
           +A GLQPGM +  Q VHDP PSPTVSASRKK K +QS+ S S G PS   HP     S Q
Sbjct: 121 QAGGLQPGMLTTGQAVHDPIPSPTVSASRKKQKITQSIPSQSFGGPSQSFHPQAIAASNQ 180

Query: 174 PSSSALRPGPPPGSKGKKPKSF-------------STGLAGRGQVANRGSSGAFPANGPS 220
           PSSSA + GP  G KGKK KS              S+G  GRGQVANRG       N P+
Sbjct: 181 PSSSAAKRGPILGPKGKKHKSVLPGASSMKSMQYASSGPTGRGQVANRG------VNEPA 234

Query: 221 EAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS 280
           EAAT++PLIGRKV TRWP+DN+FYEAVITDYNP EGRHALVYD+ +A+ETWEWVNL EIS
Sbjct: 235 EAATFDPLIGRKVRTRWPDDNNFYEAVITDYNPVEGRHALVYDMGSANETWEWVNLSEIS 294

Query: 281 PEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNG 338
           PEDI+W+G++PGISR+GG  G G G  + + R   V GAGRGRG  K   KK F  SQNG
Sbjct: 295 PEDIQWDGEDPGISRRGGYDGSGHGMNRAVGR-DSVQGAGRGRGLPKGQSKKDFLPSQNG 353

Query: 339 IGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLK 381
           IGKK   DI+ILHT+TLIKEVE+VF ANHPDP +++KAK+VLK
Sbjct: 354 IGKKAPDDIQILHTDTLIKEVERVFTANHPDPLEIDKAKKVLK 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2182345	397	EML3 "AT5G13020" [Arabidopsis	0.971	0.939	0.627	1.7e-121
TAIR|locus:2050594	429	EML4 "AT2G44440" [Arabidopsis	0.453	0.405	0.557	5.7e-86
TAIR|locus:2099287	383	EML1 "AT3G12140" [Arabidopsis	0.291	0.292	0.657	6.3e-77
TAIR|locus:2170179	320	EML2 "AT5G06780" [Arabidopsis	0.192	0.231	0.683	6.5e-68
TAIR|locus:2095868	319	AT3G57970 "AT3G57970" [Arabido	0.161	0.194	0.353	2.2e-11
TAIR|locus:2095858	223	AT3G57960 "AT3G57960" [Arabido	0.223	0.385	0.287	5.4e-06
TAIR|locus:2147730	326	AT5G20030 [Arabidopsis thalian	0.171	0.202	0.388	3.4e-05

TAIR|locus:2182345 EML3 "AT5G13020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 239/381 (62%), Positives = 283/381 (74%)

Query:     1 MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
             MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct:     1 MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query:    61 AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
             AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct:    61 AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query:   121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
             + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct:   121 NSLQS---SVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query:   181 XXXXXXXXXXXXXXFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPED 240
                            S      G +A R  +GA   N P E+ +Y+PL+GRKVWT+WP+D
Sbjct:   177 RGGPPPGPKTKKPKTSMQYPSTG-IAGRPQAGAL-TNEPGESGSYDPLVGRKVWTKWPDD 234

Query:   241 NHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISXXXXXX 300
             N +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGIS      
Sbjct:   235 NQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISRKGGHP 294

Query:   301 XXXXXXXXXLTXXXXXXXXXXXXXTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVE 360
                                     +M+ ++  P +QNGIGKK LG+IEILHTETL+KEVE
Sbjct:   295 GQGRGTKTMARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTETLLKEVE 352

Query:   361 KVFAANHPDPTDVEKAKRVLK 381
             KVF + +P+P +VEKAKRVL+
Sbjct:   353 KVFGSVNPNPAEVEKAKRVLR 373

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2050594 EML4 "AT2G44440" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
 Identities = 102/183 (55%), Positives = 125/183 (68%)

Query:     1 MDYQLSDSSGTDDDLPPSHH----NRFQRGVRPTGNGRSAVIGSASLPRMQNDMAT---- 52
             MD + SDSSGTDDDLPPSH         RG R  GNGR   +   S P+M +D+A     
Sbjct:     1 MDCKSSDSSGTDDDLPPSHRVPRGGGGGRGGRVAGNGRPLNL-PPSYPKMYDDLAADMEA 59

Query:    53 QIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIIL 112
             QIH +E++AY SVLRAFKAQ DAI+WEKES+ITELRKEL +S+EEHRELL +VN+DD I 
Sbjct:    60 QIHQIEKEAYISVLRAFKAQGDAISWEKESVITELRKELSLSNEEHRELLGRVNSDDTIR 119

Query:   113 RIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSV 172
             RIREWR++ G+QP M +  Q VHD  PSP+VSAS K  K +Q + S    + SP  HP  
Sbjct:   120 RIREWRQSGGMQPSMRNAAQVVHDTLPSPSVSASMKTHKPNQPIPSQPFASSSPSFHPQA 179

Query:   173 QPS 175
              P+
Sbjct:   180 DPT 182

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099287 EML1 "AT3G12140" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 6.3e-77, Sum P(3) = 6.3e-77
 Identities = 75/114 (65%), Positives = 87/114 (76%)

Query:    50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 109
             M TQIH +EQ+AY++VLRAFKAQSDAI+WEKESLITELRKELRVSD+EHRELLS+VN DD
Sbjct:     1 METQIHQLEQEAYTAVLRAFKAQSDAISWEKESLITELRKELRVSDDEHRELLSRVNKDD 60

Query:   110 IILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGA 163
              I RIR+WR+    Q    +  QP  D  PSPT SA+RKK KT  S  + S GA
Sbjct:    61 TIQRIRDWRQGGASQITRHATIQPF-DVLPSPTFSAARKKQKTFPSY-NPSIGA 112

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2170179 EML2 "AT5G06780" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 6.5e-68, Sum P(3) = 6.5e-68
 Identities = 54/79 (68%), Positives = 65/79 (82%)

Query:   216 ANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVN 275
             AN P+EA     LIGRKVWT+WPEDN FYEAV+T YN NEGRHALVYDINT +ETWEWV+
Sbjct:   128 ANEPAEA-----LIGRKVWTKWPEDNSFYEAVVTQYNANEGRHALVYDINTVNETWEWVD 182

Query:   276 LKEISPEDIKWEGDEPGIS 294
             L EI  +DI+W+G+E G++
Sbjct:   183 LNEIPTKDIRWDGEEDGVT 201

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2095868 AT3G57970 "AT3G57970" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:   228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD--ETWEWVNLKEISPEDIK 285
             L+GR+V  + P+++ + E +IT Y+ N   H L+   +  D  +   WV+L+ +  ED+K
Sbjct:   201 LVGRRVHIQMPDEDEYIEFLITKYDANTETHHLLSAFSNKDYEDPCNWVDLRHVQAEDMK 260

Query:   286 W-EGD 289
             W EGD
Sbjct:   261 WPEGD 265

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095858 AT3G57960 "AT3G57960" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
 Identities = 27/94 (28%), Positives = 48/94 (51%)

Query:   205 VANRGSSGAFPANGPSEA-ATYNP--LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALV 261
             + N  +   F    P ++  + NP  LIG+ V  R P+   F E +I  Y+  +  H+L+
Sbjct:   114 LTNTATPSTFFVPKPVKSWGSVNPESLIGKWVSIRLPDKAKFTEYIIKAYDAEKEMHSLL 173

Query:   262 YDINTADET-----WEWVNLKEISPEDIKWEGDE 290
              + +   E      + W+++++ISP DI WEG +
Sbjct:   174 TETSNPMEVDCIDPFRWIDIRDISPNDIMWEGGQ 207

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2147730 AT5G20030 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query:    43 LPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL 102
             +PR  ++ A  +H +E DAY S +    A    ITWE+E+ IT LR +L +S+EEH   +
Sbjct:   255 VPRKGSE-AADVHRLELDAYRSSIERLHASGPIITWEQETWITNLRLKLNISNEEHLMQI 313

Query:   103 SKVNADD 109
               + +DD
Sbjct:   314 RNLISDD 320


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.129   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      384       342   0.00096  116 3  11 23  0.49    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  241 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.08u 0.10s 37.18t   Elapsed:  00:00:02
  Total cpu time:  37.08u 0.10s 37.18t   Elapsed:  00:00:02
  Start:  Mon May 20 22:11:32 2013   End:  Mon May 20 22:11:34 2013

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
pfam03735	74	pfam03735, ENT, ENT domain	2e-36
smart00743	59	smart00743, Agenet, Tudor-like domain present in p	3e-05

>gnl|CDD|146396 pfam03735, ENT, ENT domain

 Score =  126 bits (320), Expect = 2e-36
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 50  MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 109
           M  Q+H +E +AY++VLRAF+AQ DA++WEKE L+TELRKELR+SDEEHRELL +VN+D+
Sbjct: 1   MERQLHRLELEAYAAVLRAFRAQGDALSWEKEELLTELRKELRISDEEHRELLRRVNSDE 60

Query: 110 IILRIREWRKASG 122
            +L IRE R    
Sbjct: 61  RLLTIRENRSGGN 73

This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that is amplified in breast cancer and interacts with BRCA2. The N terminus of this protein is found to be similar to other vertebrate and plant proteins of unknown function. This domain has a completely conserved histidine residue that may be functionally important. Length = 74

>gnl|CDD|214798 smart00743, Agenet, Tudor-like domain present in plant sequences

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD--ETWEWVNLKEISPEDI 284
             G +V      ++ ++EAV+T     +G++ + Y   +     T +W +L+   P   
Sbjct: 4   KEGDRVEVFS--EDSWWEAVVTKVL-GDGKYLVEYKGESEPLELTVDWSDLRPHPPWVD 59

Domain in plant sequences with possible chromatin-associated functions. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
KOG4675	273	consensus Uncharacterized conserved protein, conta	100.0
PF03735	73	ENT: ENT domain; InterPro: IPR005491 This entry re	99.94
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	99.02
smart00743	61	Agenet Tudor-like domain present in plant sequence	98.21
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	97.08
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	96.55
PF09038	122	53-BP1_Tudor: Tumour suppressor p53-binding protei	96.39
PF06003	264	SMN: Survival motor neuron protein (SMN); InterPro	94.46
PLN00104	450	MYST -like histone acetyltransferase; Provisional	94.43
KOG3026	262	consensus Splicing factor SPF30 [RNA processing an	89.29
PF11717	55	Tudor-knot: RNA binding activity-knot of a chromod	88.95
KOG4675	273	consensus Uncharacterized conserved protein, conta	83.75

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]

Probab=100.00  E-value=7.7e-54  Score=409.18  Aligned_cols=264  Identities=42%  Similarity=0.685  Sum_probs=217.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHH-HhhhhcCC
Q 016703           45 RMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIR-EWRKASGL  123 (384)
Q Consensus        45 r~~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iR-e~r~~gg~  123 (384)
                      ..++||+.+||+||++||++||+||+||+++||||||++||+||++|+||+|||+++++++.+|+.|.+|| +|+..+..
T Consensus         3 ~s~~~~~~~~~~le~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~   82 (273)
T KOG4675|consen    3 FSRDEMEAQLHRLELEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKS   82 (273)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCch
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999 56655544


Q ss_pred             CCCCCCCCCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCC----CCC
Q 016703          124 QPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFS----TGL  199 (384)
Q Consensus       124 q~g~~~~~q~~hd~~psPt~~~srKkqKts~s~ps~~~g~psp~~~p~~qpsssa~k~g~~~~~k~kk~k~~~----~~~  199 (384)
                      |--.+ ......+..|+|+.+.++|+||+.++++++.+.+.+|++++.+++.            +.+.+++++    ..+
T Consensus        83 qe~~~-e~~~~~~i~p~~~~sta~kiqkn~~~~~a~~~~~~~ps~~~t~~~~------------~~~~a~pss~s~~~p~  149 (273)
T KOG4675|consen   83 QEWSG-EGRREWPIAPRPHPSTARKIQKNLLANKAIQHNAVLPSPIPTGPLT------------FNNTATPSSFSVPSPV  149 (273)
T ss_pred             hhhhh-hhhhccccCCCcCchhHHHhhccccchhhhhcccCCCCccccCCcc------------cCcccccccccCCCCC
Confidence            32111 1223467779999999999999999999999999999999877764            222222221    111


Q ss_pred             CCCcccccCCCCCCCCCCCCCCcccCCCcccceeeeecCCCCCceeEEEee-ccCCCCceeeEecCCCCCCceeeeeccc
Q 016703          200 AGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITD-YNPNEGRHALVYDINTADETWEWVNLKE  278 (384)
Q Consensus       200 ~g~~~~~~r~~~~~~~~~~~~~~~~~~~LVGrrVkv~WPdDn~wYeg~Itd-Yn~~tg~H~LvYD~g~~~EtwEwVdL~e  278 (384)
                      +.|+             .     ..+++|||++|+..|||++.|||++|++ |+...++|+|+||.++.+++|+||||++
T Consensus       150 ~~~~-------------n-----~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~  211 (273)
T KOG4675|consen  150 SSWG-------------N-----VPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLRE  211 (273)
T ss_pred             Cccc-------------c-----CCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCcccccccc
Confidence            1121             2     3346699999999999999999999999 5556679999999999999999999999


Q ss_pred             CCccCccccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016703          279 ISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKK  342 (384)
Q Consensus       279 ~spedI~W~~e~pgi~~~~~~~~~g~g~~~~~~~~g~~~~~grgrg~~k~~k~~~~~qng~~~~  342 (384)
                      |+||||+|+++++++..+.++.++|.|.++...+++.-  .+||+|..+ |+.+++.|||.+++
T Consensus       212 I~p~DIrw~g~~~~~~~~~~~~~~g~g~~~~t~~~~~~--~~~~~~~~~-~~~~~~~~ngg~~~  272 (273)
T KOG4675|consen  212 ISPEDIRWEGGDPGNPVAPNHSKPGTGTFNTTRRTQSP--GARGRGPRT-RTGIPKTQNGGGRK  272 (273)
T ss_pred             CCHHhccccCCCCCcccccCCCCCCcccccccCCccCc--cccCCCCcc-ccccccccCccccC
Confidence            99999999999999999999999999999998887733  235555544 78899999994443

>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin

Probab=99.94  E-value=3.9e-27  Score=188.25  Aligned_cols=72  Identities=57%  Similarity=0.932  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhhcC
Q 016703           50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG  122 (384)
Q Consensus        50 ~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~r~~gg  122 (384)
                      |+++||+||++||++||+||+||++ |||+||.|||+||++|+||||||++++++|.+|+.|++||+|+++++
T Consensus         1 ~~~~l~~LE~eAY~svl~Af~Aqg~-lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~~~   72 (73)
T PF03735_consen    1 MERQLHRLELEAYSSVLRAFRAQGP-LSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQGGN   72 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-SS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence            6799999999999999999999976 99999999999999999999999999999999999999999998875

Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=99.02  E-value=1.6e-10  Score=88.67  Aligned_cols=40  Identities=30%  Similarity=0.676  Sum_probs=34.2

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA  267 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~  267 (384)
                      -+|.+|++|||+++-||+|.|++||..+.+|.|.|+||+.
T Consensus         7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGte   46 (55)
T PF09465_consen    7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTE   46 (55)
T ss_dssp             -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-E
T ss_pred             cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCE
Confidence            3799999999999999999999999999999999999986

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=98.21  E-value=1.6e-06  Score=65.28  Aligned_cols=54  Identities=26%  Similarity=0.395  Sum_probs=48.6

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecC--CCCCCceeeeecccCCcc
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI--NTADETWEWVNLKEISPE  282 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~--g~~~EtwEwVdL~e~spe  282 (384)
                      .+|..|.++|++++.||+|+|+.++. ++++.|.|++  ...+|++++.+|+-+.+.
T Consensus         4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w   59 (61)
T smart00743        4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHPPW   59 (61)
T ss_pred             CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence            48999999999999999999999998 6789999999  778899999998887654

Domain in plant sequences with possible chromatin-associated functions.

>smart00333 TUDOR Tudor domain

Probab=97.08  E-value=0.00077  Score=49.50  Aligned_cols=46  Identities=26%  Similarity=0.367  Sum_probs=38.1

Q ss_pred             CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecC-CCCCCceeeeeccc
Q 016703          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTADETWEWVNLKE  278 (384)
Q Consensus       227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~-g~~~EtwEwVdL~e  278 (384)
                      .-+|..|.+.| +|+.||.|+|++++.. +...|.|.| |+.    |||...+
T Consensus         3 ~~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~----~~v~~~~   49 (57)
T smart00333        3 FKVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNE----EVVPPSD   49 (57)
T ss_pred             CCCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCcc----EEEeHHH
Confidence            35788999999 9999999999999998 889999999 544    4664433

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=96.55  E-value=0.0036  Score=44.54  Aligned_cols=37  Identities=19%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             cceeeeecCCCCCceeEEEeeccCCCCceeeEecC-CCC
Q 016703          230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA  267 (384)
Q Consensus       230 GrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~-g~~  267 (384)
                      |..|..+|++|+.||.|+|.++++ ++.-.|.|.| |+.
T Consensus         1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~   38 (48)
T cd04508           1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNT   38 (48)
T ss_pred             CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCc
Confidence            567889999999999999999998 6777888888 554

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix

Probab=96.39  E-value=0.0035  Score=55.43  Aligned_cols=41  Identities=20%  Similarity=0.589  Sum_probs=33.9

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCC
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA  267 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~  267 (384)
                      .+|||.+|-.+|-+++-||.|+|+. +...++..|.+|||..
T Consensus         2 ~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~   42 (122)
T PF09038_consen    2 SSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYE   42 (122)
T ss_dssp             --STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-E
T ss_pred             CcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCcc
Confidence            5799999999999888889999999 5778899999999974

The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins

Probab=94.46  E-value=0.045  Score=53.36  Aligned_cols=48  Identities=27%  Similarity=0.524  Sum_probs=38.3

Q ss_pred             ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccC
Q 016703          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (384)
Q Consensus       229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (384)
                      ||-+|+..|=+|..||+|+|+..+...+.-.|+|+.-.-.   |.|.|.+|
T Consensus        71 vGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~---e~v~l~dL  118 (264)
T PF06003_consen   71 VGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNE---EEVNLSDL  118 (264)
T ss_dssp             TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEE---EEEEGGGE
T ss_pred             CCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCe---Eeeehhhh
Confidence            9999999999999999999999999999888889875433   45555555

The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.

>PLN00104 MYST -like histone acetyltransferase; Provisional

Probab=94.43  E-value=0.28  Score=51.66  Aligned_cols=58  Identities=17%  Similarity=0.338  Sum_probs=44.9

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCC------CceeeEecCCCCCCce-eeeecccCCccCcccc
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNE------GRHALVYDINTADETW-EWVNLKEISPEDIKWE  287 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~t------g~H~LvYD~g~~~Etw-EwVdL~e~spedI~W~  287 (384)
                      -||-+|.++|..|..||+|.|.+.....      .+..|.|..-+..  | |||+...+....++..
T Consensus        55 ~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrR--lDEWV~~~rLdls~~e~~  119 (450)
T PLN00104         55 EVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRR--LDEWVKLEQLDLDTVETV  119 (450)
T ss_pred             ccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCcc--HhhccCHhhccccccccc
Confidence            4999999999999999999999998733      3678888765433  5 7998888855545443

>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]

Probab=89.29  E-value=0.33  Score=47.68  Aligned_cols=37  Identities=27%  Similarity=0.525  Sum_probs=32.9

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI  264 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~  264 (384)
                      -||.||...|+||..||++.|.+..+.++.-+|.++-
T Consensus        92 ~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~s  128 (262)
T KOG3026|consen   92 KVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFAS  128 (262)
T ss_pred             ccCCEEEEeecCCCceEEeehhhccCCCCceeEEEee
Confidence            3899999999999999999999999988877777653

>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F

Probab=88.95  E-value=0.75  Score=34.67  Aligned_cols=49  Identities=31%  Similarity=0.502  Sum_probs=37.2

Q ss_pred             ccceeeeecCCCCCceeEEEeeccCCCC--ceeeEecCCCCCCceeeeecccC
Q 016703          229 IGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEI  279 (384)
Q Consensus       229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg--~H~LvYD~g~~~EtwEwVdL~e~  279 (384)
                      ||-+|.++| .++.||+|.|.+-+...+  ...|.|.--+ .---|||+.+.|
T Consensus         3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~n-kR~DeWV~~~~i   53 (55)
T PF11717_consen    3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWN-KRLDEWVPESRI   53 (55)
T ss_dssp             TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTST-GCC-EEEETTTE
T ss_pred             cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCC-CCceeeecHHHc
Confidence            789999999 999999999999988664  5677787333 223389986654

...

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]

Probab=83.75  E-value=12  Score=37.46  Aligned_cols=38  Identities=8%  Similarity=-0.218  Sum_probs=31.7

Q ss_pred             CCCCCcccCCCcccceeeeecCCCCCceeEEEeeccCC
Q 016703          217 NGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPN  254 (384)
Q Consensus       217 ~~~~~~~~~~~LVGrrVkv~WPdDn~wYeg~ItdYn~~  254 (384)
                      ....+++.....+++.++..|+-|+++|...+.-||..
T Consensus       173 ~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~  210 (273)
T KOG4675|consen  173 RKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLR  210 (273)
T ss_pred             ccccccccccchhhhhhhhhcccccccccCCccccccc
Confidence            33556666677899999999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
2fmm_E	133	Protein EMSY; ENT domain, chromo shadow domain, EM	2e-36
1uz3_A	102	EMSY protein; chromatin regulator, chromatin regul	1e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1 Length = 133

 Score =  128 bits (323), Expect = 2e-36
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 11/133 (8%)

Query: 41  ASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRE 100
             L   +++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR 
Sbjct: 1   GPLDLSRDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRA 59

Query: 101 LLSKVNADDIILRIR----------EWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKT 150
            + +   D+ +  I           EW         +     P      +    A+    
Sbjct: 60  EVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQ 119

Query: 151 KTSQSVASLSTGA 163
             +       TG+
Sbjct: 120 HNASLPVPAETGS 132

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A Length = 102

 Score =  103 bits (259), Expect = 1e-27
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 47  QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVN 106
           +++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + +  
Sbjct: 15  RDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAV 73

Query: 107 ADDIILRIREWRKAS 121
            D+ +  I       
Sbjct: 74  NDERLTTIAHNMSGP 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 54/345 (15%), Positives = 93/345 (26%), Gaps = 114/345 (33%)

Query: 3   YQLSDSSGTDDDLPPSHHNRFQ---------RGVRPT---------GNGRSAVIGSASL- 43
            Q       +      + +R Q           +RP          G+G++ V     L 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 44  PRMQNDMATQIH--------SVE------QDAYSSVLRAFKAQSD---AITWEKESLITE 86
            ++Q  M  +I         S E      Q     +   + ++SD    I     S+  E
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 87  LRKELRVSDEEHRELLSKVNADDIILR-IREWR--KASGLQPGMPSIPQPVHDPAPSPTV 143
           LR+ L+   + +   L       ++L  ++  +   A  L                   +
Sbjct: 234 LRRLLK--SKPYENCL-------LVLLNVQNAKAWNAFNLS---------------CKIL 269

Query: 144 SASRKKTKTSQSVA-SLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGR 202
             +R K      V   LS    +   H S+   S  L       +  +        L  R
Sbjct: 270 LTTRFK-----QVTDFLSAATTT---HISLDHHSMTL-------TPDEVKSLLLKYLDCR 314

Query: 203 GQVANRGSSGAFPANGPSEAATYNPL----IGRKV------WTRWPEDN-----HFYEAV 247
                       P + P E  T NP     I   +      W  W   N        E+ 
Sbjct: 315 ------------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 248 ITDYNPNEGRH---ALV---YDINTADETWE--WVNLKEISPEDI 284
           +    P E R     L       +         W ++ +     +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
1uz3_A	102	EMSY protein; chromatin regulator, chromatin regul	99.93
2fmm_E	133	Protein EMSY; ENT domain, chromo shadow domain, EM	99.91
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	97.43
2l8d_A	66	Lamin-B receptor; DNA binding protein; NMR {Gallus	97.41
2dig_A	68	Lamin-B receptor; tudor domain, integral nuclear e	97.41
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	97.17
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	97.01
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	96.88
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	96.87
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	95.87
2g3r_A	123	Tumor suppressor P53-binding protein 1; tandem tud	96.71
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	96.7
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	96.69
2d9t_A	78	Tudor domain-containing protein 3; structural geno	96.44
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	96.43
1ssf_A	156	Transformation related protein 53 binding protein	96.17
2eqj_A	66	Metal-response element-binding transcription facto	96.03
1wgs_A	133	MYST histone acetyltransferase 1; tudor domain, MY	95.13
2m0o_A	79	PHD finger protein 1; tudor domain, H3K36ME3 bindi	94.17
3fdr_A	94	Tudor and KH domain-containing protein; TDRD2, str	94.11
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	93.63
2diq_A	110	Tudor and KH domain-containing protein; tudor doma	93.36
2eqk_A	85	Tudor domain-containing protein 4; structural geno	93.29
4hcz_A	58	PHD finger protein 1; protein-peptide complex, tud	93.19
2xk0_A	69	Polycomb protein PCL; transcription, aromatic CAGE	92.37
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	91.93
2eqm_A	88	PHD finger protein 20-like 1; structural genomics,	91.16
2e5q_A	63	PHD finger protein 19; tudor domain, isoform B, st	90.84
2wac_A	218	CG7008-PA; unknown function, tudor, beta-barrel, n	90.11
2rnz_A	94	Histone acetyltransferase ESA1; HAT, chromodomain,	89.33
3ntk_A	169	Maternal protein tudor; tudor domain, OB-fold, GER	88.14
2e5p_A	68	Protein PHF1, PHD finger protein 1; tudor domain,	87.28
2ro0_A	92	Histone acetyltransferase ESA1; HAT, chromodomain,	86.0
2lcc_A	76	AT-rich interactive domain-containing protein 4A;	81.52

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A

Probab=99.93  E-value=9.5e-26  Score=189.03  Aligned_cols=74  Identities=30%  Similarity=0.458  Sum_probs=70.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhhc
Q 016703           47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS  121 (384)
Q Consensus        47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~r~~g  121 (384)
                      .++++.+||+||++||++||+||+||++ ||||||+|||+||++||||||||+++|+++++|+.|++||++..+.
T Consensus        15 ~~e~~~~l~~LEleAY~svlrAf~AqG~-Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~   88 (102)
T 1uz3_A           15 RDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP   88 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence            3599999999999999999999999965 9999999999999999999999999999999999999999998765

>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1

Probab=99.91  E-value=2e-24  Score=188.05  Aligned_cols=73  Identities=30%  Similarity=0.462  Sum_probs=69.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhh
Q 016703           47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA  120 (384)
Q Consensus        47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~r~~  120 (384)
                      .++++.+||+||++||++||+||+||++ ||||||+|||+||++||||||||+++|+++.+|+.|++||++..+
T Consensus         7 ~~e~~~~lr~LEleAY~svl~Af~AqG~-LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g   79 (133)
T 2fmm_E            7 RDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSG   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcC
Confidence            4689999999999999999999999965 999999999999999999999999999999999999999998733

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.43  E-value=0.00019  Score=56.76  Aligned_cols=53  Identities=21%  Similarity=0.391  Sum_probs=45.1

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (384)
                      .--||..|..+|. |+.||.|+|++.+.. +...|.|+|+ -.|+....+|+-|++
T Consensus         9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~   61 (74)
T 2equ_A            9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPE   61 (74)
T ss_dssp             CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCG
T ss_pred             CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCCh
Confidence            4458999999999 999999999999976 7899999999 777777777777755

>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}

Probab=97.41  E-value=8.7e-05  Score=58.06  Aligned_cols=41  Identities=27%  Similarity=0.427  Sum_probs=37.4

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~  268 (384)
                      -||..|.-+||-|+.||++.|+++|..+-...|.|-+|+.+
T Consensus        11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e   51 (66)
T 2l8d_A           11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTEL   51 (66)
T ss_dssp             CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence            38889999999999999999999998888999999997654

>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=97.41  E-value=8.5e-05  Score=58.33  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=37.4

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~  268 (384)
                      -||..|.-+||-|+.||++.|+++|..+-...|.|-+|+.+
T Consensus        14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e   54 (68)
T 2dig_A           14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL   54 (68)
T ss_dssp             CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred             ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence            38889999999999999999999998888999999997654

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=97.17  E-value=0.00038  Score=51.87  Aligned_cols=53  Identities=23%  Similarity=0.280  Sum_probs=42.2

Q ss_pred             ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (384)
Q Consensus       229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (384)
                      +|..|...|.+|+.||.|+|++.+...+...|.|.|=.-.|.-..-||+.+++
T Consensus         6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~   58 (59)
T 1mhn_A            6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC   58 (59)
T ss_dssp             TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence            78899999999999999999999988889999998854444444445555544

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=97.01  E-value=0.00092  Score=50.68  Aligned_cols=51  Identities=25%  Similarity=0.411  Sum_probs=41.8

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccC
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (384)
                      ..-||..|...|.+|+.||.|+|++.+...+...|.|.+=.-.|   .|.+++|
T Consensus         8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e---~V~~~~L   58 (64)
T 4a4f_A            8 SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAE---VTPLLNL   58 (64)
T ss_dssp             CCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEE---EEEGGGE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEE---EEeHHHc
Confidence            45699999999999999999999999998889999999865453   4444444

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=96.88  E-value=0.001  Score=54.13  Aligned_cols=54  Identities=22%  Similarity=0.265  Sum_probs=43.7

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccC
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (384)
                      .--||-.|...|.+|+.||.|+|+..+...+...|.|.+=.-.|.-.+-+|+-+
T Consensus        10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~   63 (88)
T 1g5v_A           10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP   63 (88)
T ss_dssp             CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC
Confidence            345899999999999999999999999988899999988766655444444444

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=96.87  E-value=0.00084  Score=52.51  Aligned_cols=37  Identities=27%  Similarity=0.470  Sum_probs=34.1

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINT  266 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~  266 (384)
                      .||.+|..+| .|+.||+|+|++.+.+ +...|.|++|+
T Consensus         8 ~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~   44 (67)
T 3p8d_A            8 QINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGV   44 (67)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSC
T ss_pred             ccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCc
Confidence            5899999999 9999999999999998 67999999954

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=95.87  E-value=0.00018  Score=58.15  Aligned_cols=48  Identities=25%  Similarity=0.474  Sum_probs=38.2

Q ss_pred             ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccC
Q 016703          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (384)
Q Consensus       229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (384)
                      ||.+|..+|. |+.||.|+|++.+.. +...|+|++| ..|+..+-+|+-+
T Consensus         9 vGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DG-n~E~V~~s~LrPl   56 (81)
T 2ldm_A            9 INEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDG-VVQTVKHIHVKAF   56 (81)
Confidence            7999999999 999999999999854 5899999994 4545555555444

>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A

Probab=96.71  E-value=0.0011  Score=57.45  Aligned_cols=42  Identities=26%  Similarity=0.559  Sum_probs=37.5

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~  268 (384)
                      .++||.||..+|.++..||-|+|+. +...++..|.+|||+..
T Consensus         4 ~~~~G~rV~AkWsdn~~yYpG~V~~-~~~~~ky~V~FdDg~~~   45 (123)
T 2g3r_A            4 NSFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYEC   45 (123)
T ss_dssp             -CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEE
T ss_pred             ccccceEEEEEeccCCcCcccEEEE-eccCCeEEEEEcCCCee
Confidence            6799999999999888999999998 47889999999999755

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=96.70  E-value=0.0013  Score=51.84  Aligned_cols=56  Identities=21%  Similarity=0.198  Sum_probs=45.2

Q ss_pred             CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (384)
Q Consensus       227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe  282 (384)
                      --+|..|...|.+|+.||.|+|++.+...+...|.|.|=.-.|.-..-||+.|+++
T Consensus        18 ~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~   73 (77)
T 3pnw_C           18 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE   73 (77)
T ss_dssp             CCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred             CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence            45899999999999999999999999887888899988666766666677777665

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=96.69  E-value=0.0014  Score=53.59  Aligned_cols=39  Identities=26%  Similarity=0.422  Sum_probs=35.2

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCC
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINT  266 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~  266 (384)
                      .=.||.+|..+| .|..||.|+|++.+.. +...|.|++|+
T Consensus        21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~   59 (85)
T 3qii_A           21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGV   59 (85)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSC
T ss_pred             ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCC
Confidence            446999999999 9999999999999997 67999999954

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=96.44  E-value=0.0032  Score=49.59  Aligned_cols=57  Identities=19%  Similarity=0.198  Sum_probs=46.9

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe  282 (384)
                      ..-+|..|...|.+|+.||.|+|++.+...+...|.|-|=.-.|.-..-||+.|+++
T Consensus         9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~   65 (78)
T 2d9t_A            9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE   65 (78)
T ss_dssp             CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred             CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence            346899999999999999999999999877889999988666666666677777654

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=96.43  E-value=0.0027  Score=46.21  Aligned_cols=40  Identities=18%  Similarity=0.222  Sum_probs=33.0

Q ss_pred             ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (384)
Q Consensus       229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~  268 (384)
                      +|..+...|.+|+.||.|+|++.+...+...|.|.|=.-.
T Consensus         4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~   43 (54)
T 3s6w_A            4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY   43 (54)
T ss_dssp             TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe
Confidence            6888999999999999999999998878888999875444

>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1

Probab=96.17  E-value=0.0042  Score=55.66  Aligned_cols=42  Identities=26%  Similarity=0.519  Sum_probs=37.7

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~  268 (384)
                      .++||.||..+|.+++-||.|+|+.+ ...++..|.+|||...
T Consensus         8 ~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k   49 (156)
T 1ssf_A            8 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC   49 (156)
T ss_dssp             CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEE
T ss_pred             cchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCee
Confidence            67999999999999999999999996 6677899999999844

>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}

Probab=96.03  E-value=0.0055  Score=48.02  Aligned_cols=49  Identities=27%  Similarity=0.519  Sum_probs=42.6

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (384)
                      -||.-|..+| .|.-||+|+|+.-|..++.-.|.|.||+.-    ||..++|.+
T Consensus        15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~----w~~~kdi~~   63 (66)
T 2eqj_A           15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS----WVLWKDIQT   63 (66)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred             cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE----EEEeecccc
Confidence            4888999999 999999999999999999999999999654    777666643

>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3

Probab=95.13  E-value=0.098  Score=45.21  Aligned_cols=49  Identities=20%  Similarity=0.305  Sum_probs=38.2

Q ss_pred             cccceeeeecCCCCCceeEEEeeccC----CCCceeeEecCCCCCCce-eeeecccC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNP----NEGRHALVYDINTADETW-EWVNLKEI  279 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~----~tg~H~LvYD~g~~~Etw-EwVdL~e~  279 (384)
                      -||-+|.++|+ |+.||+|.|.+-..    ..-...|.|..=+  -+| |||....|
T Consensus        14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwN--kR~DEWV~~~ri   67 (133)
T 1wgs_A           14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFN--RRLDEWVDKNRL   67 (133)
T ss_dssp             CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTC--SSCCEEECTTTS
T ss_pred             CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcC--CCceeecChhhc
Confidence            49999999998 77999999998664    2347888888644  345 89987776

>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}

Probab=94.17  E-value=0.23  Score=40.09  Aligned_cols=49  Identities=24%  Similarity=0.416  Sum_probs=41.7

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (384)
                      .+|.-|-.+| .|.-||-|+|+.-|...+.-.|.|+|++.-    |+..++|.+
T Consensus        28 ~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~----W~~~kdi~~   76 (79)
T 2m0o_A           28 WEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP   76 (79)
T ss_dssp             CTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCEE----EEETTTBCC
T ss_pred             ccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCeE----EEEeecccc
Confidence            4788999999 678999999999999999999999999754    777776643

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1

Probab=94.11  E-value=0.043  Score=43.52  Aligned_cols=55  Identities=15%  Similarity=0.204  Sum_probs=40.5

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (384)
                      ..-+|.-|-+.|++|+.||.|.|++... ++.-.|.|-|=.-.|.-..-||+.+.+
T Consensus        27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~~lr~l~~   81 (94)
T 3fdr_A           27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRS   81 (94)
T ss_dssp             CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGGCEECCG
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHHHhhhcCH
Confidence            3458889999999999999999999974 456677776665554444445555554

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.63  E-value=0.21  Score=40.61  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             CCcccceeeeecC---CCCCceeEEEeeccCCCC--ceeeEecCCCCCCce-eeeecccCCccCccccCCCC
Q 016703          226 NPLIGRKVWTRWP---EDNHFYEAVITDYNPNEG--RHALVYDINTADETW-EWVNLKEISPEDIKWEGDEP  291 (384)
Q Consensus       226 ~~LVGrrVkv~WP---dDn~wYeg~ItdYn~~tg--~H~LvYD~g~~~Etw-EwVdL~e~spedI~W~~e~p  291 (384)
                      .-.||-+|.++++   .++.||+|.|.+.+...+  +..|.|..=+.  +| |||....|.-..++|...++
T Consensus         9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~Nk--RlDEWV~~~rl~~~~~~~p~~~~   78 (87)
T 2eko_A            9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNR--RLDEWVTHERLDLKKIQFPKKEA   78 (87)
T ss_dssp             SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCS--CCCEEECTTTBCGGGCCCCCCSC
T ss_pred             cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCc--ccccccCHhHcccccccCCCCCC
Confidence            3459999999997   689999999999887543  68888887654  45 89999998777788875433

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=93.36  E-value=0.059  Score=44.01  Aligned_cols=55  Identities=16%  Similarity=0.235  Sum_probs=41.4

Q ss_pred             CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (384)
Q Consensus       227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe  282 (384)
                      ..+|.-|-..|.+|+.||.|+|+..+.. +.-.|.|-|=.-.|.-.+-||+.+.++
T Consensus        33 ~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~~Lr~l~~~   87 (110)
T 2diq_A           33 VHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRALRSD   87 (110)
T ss_dssp             CCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGGGCEECCHH
T ss_pred             CCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehHHhhcCcHH
Confidence            4578889999999999999999999874 556677777665555555566666553

>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.29  E-value=0.056  Score=44.10  Aligned_cols=55  Identities=11%  Similarity=0.074  Sum_probs=45.1

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (384)
                      ..-+|.-|-+..+|+|.||.|.|..-+..+.-|-+.||.|+.+ +..|-.|+.+.+
T Consensus        21 ~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~-~V~~~~LR~L~~   75 (85)
T 2eqk_A           21 KWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVEL-VVNVDCLRKLEE   75 (85)
T ss_dssp             CCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEE-EEETTTEEECCH
T ss_pred             CccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEE-EEEccccccCCH
Confidence            4568889999999999999999999999999999999999754 444445555554

>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}

Probab=93.19  E-value=0.095  Score=40.12  Aligned_cols=48  Identities=21%  Similarity=0.359  Sum_probs=39.9

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS  280 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~s  280 (384)
                      .+|..|-.+|-| .-||-|+|...|...+...|.++|++.-    |+.+++|.
T Consensus         5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~----W~~~kdi~   52 (58)
T 4hcz_A            5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDIS   52 (58)
T ss_dssp             CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEE----EEEGGGEE
T ss_pred             ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeE----EEEhHHcc
Confidence            367889999976 8999999999999999999999999654    66555553

>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}

Probab=92.37  E-value=0.25  Score=39.02  Aligned_cols=38  Identities=16%  Similarity=0.331  Sum_probs=30.4

Q ss_pred             CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCC
Q 016703          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA  267 (384)
Q Consensus       227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~  267 (384)
                      =.+|.-|-++|=| ..||-|+|++  ..+..-.|.|+|++.
T Consensus        16 ~~~geDVL~rw~D-G~fYLGtIVd--~~~~~ClV~FeD~S~   53 (69)
T 2xk0_A           16 YALQEDVFIKCND-GRFYLGTIID--QTSDQYLIRFDDQSE   53 (69)
T ss_dssp             CCTTCEEEEECTT-SCEEEEEEEE--ECSSCEEEEETTCCE
T ss_pred             cccCCeEEEEecC-CCEEEEEEEe--cCCceEEEEecCCcc
Confidence            3489999999966 9999999976  446777888898864

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=91.93  E-value=0.16  Score=43.93  Aligned_cols=50  Identities=16%  Similarity=0.149  Sum_probs=36.4

Q ss_pred             CCcccceeeeecCCCC----CceeEEEeeccCCCCceeeEecCCCCCCce-eeeecccC
Q 016703          226 NPLIGRKVWTRWPEDN----HFYEAVITDYNPNEGRHALVYDINTADETW-EWVNLKEI  279 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn----~wYeg~ItdYn~~tg~H~LvYD~g~~~Etw-EwVdL~e~  279 (384)
                      +--+|.+|.+||-.++    .||.|+|+....  ..+.|.|+.=+  .+| |||.+..|
T Consensus        60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~--~~~~EiV~~~rl  114 (128)
T 3h8z_A           60 EITEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACD--ATYNEIVTLERL  114 (128)
T ss_dssp             CCCTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC------CEEECGGGE
T ss_pred             CCCCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCC--CCcceEEehhhe
Confidence            3459999999999887    899999999984  68899988744  244 78875554

>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A

Probab=91.16  E-value=0.82  Score=36.88  Aligned_cols=48  Identities=17%  Similarity=0.328  Sum_probs=38.7

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCce-eeeeccc
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETW-EWVNLKE  278 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~Etw-EwVdL~e  278 (384)
                      -||-||...-+. +.||+|+|+.-+....+-.|.||--+  .+| |||+.+.
T Consensus        21 ~vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~--~~yDeWv~~dS   69 (88)
T 2eqm_A           21 EIGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWS--HRYDEWIYWDS   69 (88)
T ss_dssp             CSSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSST--TTEEEEEETTS
T ss_pred             CCCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCC--CcccEEeeCCC
Confidence            489999888766 57999999998888888899999664  556 7998653

>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.84  E-value=0.28  Score=38.09  Aligned_cols=50  Identities=24%  Similarity=0.456  Sum_probs=40.8

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe  282 (384)
                      -+|.-|-.+| .|.-||-|+|+.-|.....-.|.|.|++.-    ||..++|.+-
T Consensus         9 ~eGqdVLarW-sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~~   58 (63)
T 2e5q_A            9 TEGQYVLCRW-TDGLYYLGKIKRVSSSKQSCLVTFEDNSKY----WVLWKDIQHA   58 (63)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEECCCCSTTSEEEEEETTSCEE----EEEGGGEECC
T ss_pred             ecCCEEEEEe-cCCCEEEEEEEEEecCCCEEEEEEccCcee----EEEeeccccc
Confidence            4788889999 568999999999999988899999998654    7766666443

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}

Probab=90.11  E-value=0.24  Score=43.55  Aligned_cols=54  Identities=22%  Similarity=0.303  Sum_probs=40.6

Q ss_pred             CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (384)
Q Consensus       227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe  282 (384)
                      .-+|..|-..|.+|+.||.|+|++...  +.-.|.|-|-...|...+-+|+.++++
T Consensus        52 ~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~l~~l~~~  105 (218)
T 2wac_A           52 PKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNRLAALPPA  105 (218)
T ss_dssp             CCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGGEEECCGG
T ss_pred             CCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHHcccCChh
Confidence            347888999999999999999999976  666777766555555555566666643

>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=89.33  E-value=2.3  Score=34.99  Aligned_cols=58  Identities=16%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCC--ceeeEecCCCCCCceeeeecccCCcc-CccccC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPE-DIKWEG  288 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg--~H~LvYD~g~~~EtwEwVdL~e~spe-dI~W~~  288 (384)
                      -||-+|.+++  ++.||+|.|.+-....+  +..|-|..-+.. --|||....|.-. +++|..
T Consensus        27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkR-lDEWV~~~RI~l~~~v~~p~   87 (94)
T 2rnz_A           27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK   87 (94)
T ss_dssp             CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCST-TCEEEETTTBCSSSCCCCCC
T ss_pred             cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHHHcccccCccCCC
Confidence            4999999996  88999999998776544  678888877543 1389999888544 488864

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*

Probab=88.14  E-value=0.32  Score=42.33  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=37.7

Q ss_pred             CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (384)
Q Consensus       227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe  282 (384)
                      .-+|.-+-..|++|+.||.|+|+..+... .-.|.|-|=.-.|.  +=+|+.+.++
T Consensus        48 ~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~--v~~lr~l~~~  100 (169)
T 3ntk_A           48 LKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV--TQQFRQLPEE  100 (169)
T ss_dssp             CCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE--ESCEECCCHH
T ss_pred             CCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE--hhhhhccCHH
Confidence            34778888999999999999999998854 66677754433333  2355666543

>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.28  E-value=0.54  Score=36.99  Aligned_cols=48  Identities=21%  Similarity=0.359  Sum_probs=39.7

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS  280 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~s  280 (384)
                      -+|.-|-.+|-| .-||-|+|+.-|...+.-.|.|.|++.-    |+..++|.
T Consensus        11 ~eGqdVLarWsD-GlfYlGtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~   58 (68)
T 2e5p_A           11 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDIS   58 (68)
T ss_dssp             CTTCEEEEECTT-SSEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEE
T ss_pred             ccCCEEEEEecC-CcEEEeEEEEEecCCcEEEEEEccCCee----eeeeeccc
Confidence            478889999966 9999999999999999999999998643    77655553

>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=86.00  E-value=1.1  Score=36.63  Aligned_cols=57  Identities=16%  Similarity=0.323  Sum_probs=44.7

Q ss_pred             cccceeeeecCCCCCceeEEEeeccCCCC--ceeeEecCCCCCCce-eeeecccCCcc-CccccC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETW-EWVNLKEISPE-DIKWEG  288 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg--~H~LvYD~g~~~Etw-EwVdL~e~spe-dI~W~~  288 (384)
                      -||-+|.+++  ++.||+|.|.+-+...+  ...|.|..=+.  +| |||....|.-. +++|..
T Consensus        25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~Nk--RlDEWV~~~rl~l~~~v~~p~   85 (92)
T 2ro0_A           25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNK--RLDEWITTDRINLDKEVLYPK   85 (92)
T ss_dssp             CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCT--TSCEEEEGGGEETTSCEEECC
T ss_pred             cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCc--ccccccCHhHcccccCccCCC
Confidence            4899999997  88999999998776543  68888887654  35 89998888544 477764

>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}

Probab=81.52  E-value=1.1  Score=35.17  Aligned_cols=50  Identities=28%  Similarity=0.451  Sum_probs=39.1

Q ss_pred             cccceeeeecCCC--CCceeEEEeeccCCCC--ceeeEecCCCCCCce-eeeecccC
Q 016703          228 LIGRKVWTRWPED--NHFYEAVITDYNPNEG--RHALVYDINTADETW-EWVNLKEI  279 (384)
Q Consensus       228 LVGrrVkv~WPdD--n~wYeg~ItdYn~~tg--~H~LvYD~g~~~Etw-EwVdL~e~  279 (384)
                      .||-+|.++|++.  ..||+|.|.+-+...+  +..|-|..=+.  +| |||....|
T Consensus         7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnk--r~DEWV~~~ri   61 (76)
T 2lcc_A            7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNV--RYDEWVKADRI   61 (76)
T ss_dssp             STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCC--SSCEEEEGGGE
T ss_pred             CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCC--CceEecChhhc
Confidence            4899999999953  7999999999887655  57888887544  34 89976554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1uz3a1	90	a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [T	2e-27
d1mhna_	59	b.34.9.1 (A:) Survival motor neuron protein 1, smn	6e-04
d2diqa1	97	b.34.9.1 (A:8-104) Tudor and KH domain-containing	0.002
d2d9ta1	60	b.34.9.1 (A:8-67) Tudor domain-containing protein	0.002

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All alpha proteins
fold: ENT-like
superfamily: ENT-like
family: Emsy N terminal (ENT) domain-like
domain: Emsy
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 48  NDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNA 107
           ++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + +   
Sbjct: 4   DECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVN 62

Query: 108 DDIILRIREWRKASG 122
           D+ +  I        
Sbjct: 63  DERLTTIAHNMSGPN 77

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 6e-04
 Identities = 13/54 (24%), Positives = 17/54 (31%)

Query: 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282
           +G K    W ED   Y A I   +       +VY      E     +L     E
Sbjct: 6   VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 220 SEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279
           S        +G  V    P +  +Y A +     N G   L +     +      +L+ +
Sbjct: 19  SVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRAL 77

Query: 280 SPE 282
             +
Sbjct: 78  RSD 80

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 232 KVW-------TRWPEDNHFYEAVITDYNPNEGRHALVYDI---NTADETWEWVNLKEISP 281
           KVW         + EDN FY A +   +   G  A+V      N   E     N+K +  
Sbjct: 1   KVWKPGDECFALYWEDNKFYRAEVEALHS-SGMTAVVKFTDYGNY--EEVLLSNIKPVQT 57

Query: 282 E 282
           E
Sbjct: 58  E 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1uz3a1	90	Emsy {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	96.88
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	96.65
d2diga1	55	Lamin-b receptor {Human (Homo sapiens) [TaxId: 960	96.5
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	94.5
d2g3ra1	53	p53-binding protein 1, 53BP1 {Human (Homo sapiens)	93.65
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	90.74
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	90.34

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: ENT-like
superfamily: ENT-like
family: Emsy N terminal (ENT) domain-like
domain: Emsy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.6e-25  Score=177.92  Aligned_cols=75  Identities=29%  Similarity=0.454  Sum_probs=70.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhhcC
Q 016703           47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG  122 (384)
Q Consensus        47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~r~~gg  122 (384)
                      .+++...||+||++||++||+||+||++ |||+||.|||+||++|+||||||+++|+++++|+.|++||++.++..
T Consensus         3 r~e~~~~lR~LEleAY~svl~Af~Aqg~-lsweke~lLt~LR~~L~IS~eeHr~elrr~~~De~l~~I~e~~~G~~   77 (90)
T d1uz3a1           3 RDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPN   77 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhccHHHHHHHHHHhcCCC
Confidence            3588999999999999999999999965 99999999999999999999999999999999999999999987653

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00041  Score=50.15  Aligned_cols=53  Identities=19%  Similarity=0.249  Sum_probs=40.4

Q ss_pred             ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (384)
Q Consensus       229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (384)
                      ||-.+...|++|+.||.|+|...+...+...|.|.|=...|.-.-=||+.|++
T Consensus         5 vG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lr~l~~   57 (60)
T d2d9ta1           5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQT   57 (60)
T ss_dssp             TTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEECCCCEEEEcHHHcCcCCC
Confidence            78899999999999999999999998888889998864443322224444444

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00088  Score=48.39  Aligned_cols=51  Identities=24%  Similarity=0.322  Sum_probs=40.5

Q ss_pred             ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccC
Q 016703          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (384)
Q Consensus       229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (384)
                      ||..+...|.+|+.||.|+|+..++.++.-.|.|.|-.-.|+-..-||+.+
T Consensus         6 vG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~fvDYGn~e~V~~~~l~~~   56 (59)
T d1mhna_           6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP   56 (59)
T ss_dssp             TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCT
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEeCCCEEEEEHHHCcCC
Confidence            789999999999999999999999888888899988765544443344333

>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Lamin-b receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00094  Score=48.52  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=37.7

Q ss_pred             ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (384)
Q Consensus       229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~  268 (384)
                      .|.-|+.+||-.+=|||-.|.+||..+-+..|.|.||+.-
T Consensus         8 ~Ge~vm~RwPgSsLyyev~vls~d~~~~~YtV~ykDGTel   47 (55)
T d2diga1           8 DGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL   47 (55)
T ss_dssp             SSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred             CCcEEEeecCCCceEEEEEEEeecCcceEEEEEecCCcee
Confidence            5778999999999999999999999999999999999865

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.50  E-value=0.064  Score=44.47  Aligned_cols=50  Identities=22%  Similarity=0.366  Sum_probs=37.7

Q ss_pred             cccceeeeecCCCCCceeEEEeecc--CCCC--ceeeEecCCCCCCce-eeeecccCC
Q 016703          228 LIGRKVWTRWPEDNHFYEAVITDYN--PNEG--RHALVYDINTADETW-EWVNLKEIS  280 (384)
Q Consensus       228 LVGrrVkv~WPdDn~wYeg~ItdYn--~~tg--~H~LvYD~g~~~Etw-EwVdL~e~s  280 (384)
                      -||-+|.++|+| +.||+|.|.+-.  ...+  +..|.|+.-+.  +| |||+...|.
T Consensus        14 ~vG~~~~v~~~d-g~~~~AkVl~~r~~~~~~~~~yyVHY~g~n~--r~DEWV~~~ri~   68 (133)
T d1wgsa_          14 EIGETYLCRRPD-STWHSAEVIQSRVNDQEGREEFYVHYVGFNR--RLDEWVDKNRLA   68 (133)
T ss_dssp             CTTSEEEEEETT-TEEEEEEEEEEEEETTTTEEEEEEECTTTCS--SCCEEECTTTSC
T ss_pred             ecCCEEEEEeCC-CCEeEEEEEEEEecccCCCeEEEEEccCCcc--ccceecCHHHcc
Confidence            499999999985 679999998753  3333  57788876653  35 799888774

>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: p53-binding protein 1, 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.029  Score=39.80  Aligned_cols=40  Identities=25%  Similarity=0.581  Sum_probs=36.2

Q ss_pred             CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCC
Q 016703          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA  267 (384)
Q Consensus       227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~  267 (384)
                      ++||-||-..|-...-||.|.|+. |...++.+|.+|||-+
T Consensus         1 sfvglrvvakwssn~yfysg~i~r-d~g~~r~rl~fdd~~e   40 (53)
T d2g3ra1           1 SFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYE   40 (53)
T ss_dssp             CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCE
T ss_pred             CceeEEEEEEeecCCEEEeeEEeh-hcCCceEEEEecCCcE
Confidence            579999999999999999999996 7778999999999953

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.14  Score=38.83  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=36.8

Q ss_pred             CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (384)
Q Consensus       226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe  282 (384)
                      ..-+|.-+-..|- |+.||.|+|++.+.. +.-.|.|=|=...|+-.+-||+.+.++
T Consensus        25 ~p~~G~~c~a~~~-D~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~   79 (90)
T d2hqxa1          25 APRRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPSTRLGTLSPA   79 (90)
T ss_dssp             CCCTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGGGEECCCGG
T ss_pred             CCCCCCEEEEEEc-CCCEEEEEEEEeCCC-CeEEEEEEeCCCCEEEEHHHeeECCHH
Confidence            3467888999994 899999999998754 345555544444444444455655543

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.1  Score=39.09  Aligned_cols=41  Identities=20%  Similarity=0.234  Sum_probs=31.6

Q ss_pred             CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (384)
Q Consensus       227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~  268 (384)
                      .-||..+-++|++|+.||.|+|...+.. +.-.|.|-|-...
T Consensus        26 ~~~G~~~~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~   66 (97)
T d2diqa1          26 VHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDN   66 (97)
T ss_dssp             CCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCE
T ss_pred             CCCCCEEEEEECCCCeEEEEEEEEECCC-CEEEEEEEeeCCE
Confidence            3478889999999999999999999753 5566666555444