Citrus Sinensis ID: 016710

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccccHHHHHHHHHHHcccEEEEEEEccccccccccccEEcccccEEEEccEEEccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEcccccccEEEEEccccccEEEEEEccccEEEEEEEccEEEEEEEccccccccccccccccEEEEEEEcccccHHHHHHHccccccccEEEEccccccEEEEEccccEEEEEEccccccEEEEEEcccEEEEEEEEEEEEEEcccccccccEEEEEcccccHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccEccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEcccEEEEEEEEEEcccccccccHcHcEEEEEEEEccHHHHHHHHHcccHHHEEEEEEccccEEEEEccccEEEEEEEEcccccEEEEEEcccEEEEEEEcccccccEEEcccccEEEHEEEccccccccccccHccccHHHHHHHHHcccccEEEEEccccEEEEEEEcccEEEEEEEccccEEEEEcccccccccccHEHHHccEEEEEcccccccHHHEccccccccEEcccc
Coil and Loop (DISEMBL)
meslshidrisnlpepilHHILSFLPFTQTVQTRVLSRTWKRAWHTFsvlkfdsdfFHQVFledsndgseaGKQKLREIFNYIKETLRIRHNEMIRLMNfslfvpgdsleiclpyidQCIFYALGCNVKELSLellgnprfnlpeiilcsNSIEILTLAglklesprsvklssLTKLFLMRVDATDLVLQSLLIGcplieylslqlcpglknlelsgltklnkfevcdAEELQRLCIIAQdvqevsiqgplpfqckfnlaSCKFLKYLRFALTHIKDewlcnqiskfpllESLLIagcddlksinissrslklleiYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAItfskshllfqtensssewyTEHFNFLQCSIVFPRW
Flexible Loop (DISEMBL)
MESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDsndgseagkqKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAglklesprsVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLqcsivfprw
Low Complexity Region (SEG)
MESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Disordered region (IsUnstruct)
**********SNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLE***********KLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVF***
Disordered Region (DISOPRED)
****SHI*RISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Disordered Region (DISEMBL)
MESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Disordered Region (DISPRO)
******IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFL*DSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQCSIVFPRW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q1PE04	258	F-box/LRR-repeat protein	yes	no	0.562	0.837	0.286	5e-16
Q9LV26	456	Putative F-box/LRR-repeat	no	no	0.531	0.447	0.285	7e-15
Q9FX89	385	Putative F-box protein At	no	no	0.502	0.501	0.311	1e-14
Q501G5	307	F-box protein At5g03100 O	no	no	0.492	0.615	0.284	2e-11
Q84W80	481	F-box/LRR-repeat protein	no	no	0.526	0.419	0.309	2e-11
Q9LYZ2	469	Putative F-box/LRR-repeat	no	no	0.557	0.456	0.257	3e-11
Q9LX51	520	F-box/LRR-repeat protein	no	no	0.460	0.340	0.311	1e-10
Q8H1R7	419	F-box/FBD/LRR-repeat prot	no	no	0.671	0.615	0.275	1e-10
Q6NKX3	448	F-box/FBD/LRR-repeat prot	no	no	0.471	0.404	0.315	1e-10
Q9FZ70	416	F-box/FBD/LRR-repeat prot	no	no	0.471	0.435	0.303	1e-10

>sp|Q1PE04|FBL25_ARATH F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana GN=FBL25 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 8   DRISNLPEPILHHILSFLPFTQ-TVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 66
           D ISNLP+ ILHHILSF+P T   ++T VLS+ W+  W     L F+        +  + 
Sbjct: 28  DSISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTL 87

Query: 67  DGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 126
               A K                       + +F L     S      ++   I +A+  
Sbjct: 88  ASYTASK-----------------------ITSFHLCT---SYSYEAGHVHSSIEFAMSH 121

Query: 127 NVKELSLELLGNPRFN-LPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDAT 185
           NV  LSL     P  N  P+    S+S++ + L    L     V  +SL  L L R + +
Sbjct: 122 NVDNLSLAFSSFPPCNKFPDFFYTSSSLKRVELRSASLTPSCIVSWTSLRDLSLTRCNLS 181

Query: 186 DLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV----CDAEELQRLCIIAQD 241
           D     +L GCP++E LSL+ C  LK L+LS   +L + E+    C  E +Q + I+A  
Sbjct: 182 DKSFLKILSGCPILESLSLKFCESLKYLDLSKSLRLTRLEIERRSCFREPMQSMQIVAPH 241

Query: 242 VQEVSIQG 249
           +  + ++ 
Sbjct: 242 IHYLRLRD 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 82.0 bits (201), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 34/238 (14%)

Query: 7   IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 66
           +D IS+LP+ IL HILSF+P    + T +LS+ W+  W     L F+       F++++ 
Sbjct: 30  VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89

Query: 67  DGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 126
               A K                       +M F L     SL   +P+++  I +A+  
Sbjct: 90  TRYTASK-----------------------MMRFHLHT---SLINNVPHLESWIKFAMSR 123

Query: 127 NVKELSLELLGN--PRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDA 184
           NV  LSL+L      +F  P+    ++S++ LT+    L+   ++    L KL+L     
Sbjct: 124 NVDHLSLDLWNQVANKFKFPDFFHINSSLKQLTVV---LDFSDTMIAICLKKLYLSTCLL 180

Query: 185 TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV-CD--AEELQRLCIIA 239
           +D  + ++L GCP++E L+L  C GL+ L+LS   +L   E+ C+    EL  + I+A
Sbjct: 181 SDESMANILFGCPILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAMQIVA 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FX89|FB50_ARATH Putative F-box protein At1g49610 OS=Arabidopsis thaliana GN=At1g49610 PE=4 SV=2

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 32/225 (14%)

Query: 4   LSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLE 63
           L  +D IS+LP+ IL   LS +P    ++T VLS+ W+  W     L FD  +   V   
Sbjct: 22  LEDVDSISSLPDVILQENLSLIPTKFAIRTSVLSKRWRHVWSETPSLDFDDCYKLDV--- 78

Query: 64  DSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYA 123
                            ++I +TL +      ++M F L++      I LPYID  I +A
Sbjct: 79  -----------------DFIDKTLALYRAR--KIMTFDLWITNG---INLPYIDGWIKFA 116

Query: 124 LGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPR-SVKLSSLTKLFLMR 181
           +  NV+ L L       +++P+ +  ++S++ L L     E +PR SV  SSLTKL L  
Sbjct: 117 MSRNVENLFLS-FDFRLYDVPDYLYINSSVKQLVLGTESSELNPRCSVSWSSLTKLSLF- 174

Query: 182 VDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 226
              +D  +  +L GCP+IE L+L  C  L  L+L+    L   E+
Sbjct: 175 ---SDESIAKILSGCPIIESLTLHFCDQLMVLDLTKSPSLKILEI 216

Arabidopsis thaliana (taxid: 3702)

>sp|Q501G5|FB250_ARATH F-box protein At5g03100 OS=Arabidopsis thaliana GN=At5g03100 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 36/225 (16%)

Query: 7   IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWH---TFSVL--KFDSDFFHQVF 61
           +D IS+LP+ ILHHIL+  P    ++T VLS+ WK  W+   + S++  + D D  ++  
Sbjct: 8   VDFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVDPDSLNKTL 67

Query: 62  LEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIF 121
              S                              ++ +F + +  D   + +P ID  I 
Sbjct: 68  SSYSTP----------------------------KIKSFDVTISRD---VTVPEIDTWIN 96

Query: 122 YALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMR 181
            AL    + +SL    + RF     I  S     LTL    L     V  SSL  L L R
Sbjct: 97  LALSRKAENVSLRFTSHYRFRDTFFINSSLKQLSLTLVYCILNPKCVVSWSSLRNLSLNR 156

Query: 182 VDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 226
              +D  +  +L GC L+E L+L LC  L +L+LS    L + E+
Sbjct: 157 CKVSDDSIAKILTGCSLLESLTLNLCDRLNDLDLSKSLSLRRLEI 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 111/239 (46%), Gaps = 37/239 (15%)

Query: 8   DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 67
           D IS LP+ IL  ILS+LP    ++T VLSR W+  W         SD +   F  D  D
Sbjct: 37  DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVW---------SDTWSLSFHRDRPD 87

Query: 68  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPY----IDQCIFYA 123
                        N I +  R       ++M+F +     +  I  P     ID  I +A
Sbjct: 88  AP---------CINRILDRYR-----APKMMSFRICSCCRAACISRPDTHADIDSWINFA 133

Query: 124 LGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLA-GLKLE----SPR-SVKLSSLTKL 177
           +  NV+ LSL  L   ++++PE +  ++S++ L L  G K +    +P+ SV  +SL  L
Sbjct: 134 MSRNVENLSL-YLDEDKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNL 192

Query: 178 FLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV---CDAEELQ 233
            L   + +D  +  +L GCP++E L L  C  LK L+LS   +L   E+   C  E  Q
Sbjct: 193 SLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEITRRCRMEPTQ 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 31/245 (12%)

Query: 7   IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 66
           +D IS+LP+ +L HI S++P    ++T VLS+ W+  W     L F+       +L+ S 
Sbjct: 27  VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFE-------WLKVS- 78

Query: 67  DGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 126
                 K   + + +Y    ++  H                S E    +++  I +A+  
Sbjct: 79  -----PKLINKTLASYTASKIKSFH-----------LCTRYSYEADTHHVNSSIEFAMSH 122

Query: 127 NVKELSLELLG-NPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDAT 185
           NV +LSL     +P +N  +    ++S++ + L  + L     V  +SL  L L     +
Sbjct: 123 NVDDLSLAFRRCSPFYNFDDCFYTNSSLKRVELRYVDLMPRCMVSWTSLKNLSLTDCTMS 182

Query: 186 DLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEV 245
           D     +L GCP++E LSL+ C  LK L LS   +L + E+      +R+  I   +  +
Sbjct: 183 DESFLEILSGCPILESLSLKFCMSLKYLNLSKSLRLTRLEI------ERISYIRAPMLSM 236

Query: 246 SIQGP 250
            I  P
Sbjct: 237 QIVAP 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 92/209 (44%), Gaps = 32/209 (15%)

Query: 8   DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 67
           DRIS+LP P++ HILSFLP  +   T VLS+ W+  +   + L FD          D  D
Sbjct: 7   DRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDD--------SDYQD 58

Query: 68  GSEAGKQKL-REIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 126
           G      +L R    ++   L ++ N  +    FSL     + ++ L  +   I   LG 
Sbjct: 59  GKPKSDVELSRSFMEFVDRVLALQGNGSVN--KFSLEC--SNYDVDLARVTGWILNVLGR 114

Query: 127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLS------SLTKLFLM 180
            V EL L +L  P   LP  I  S      TL  LKL     + L+       L KL  +
Sbjct: 115 GVSELDLSILEYP---LPSEIFVSK-----TLVRLKLGPANDLTLTLDRKDVFLPKLKTL 166

Query: 181 RVDATDLVLQS-----LLIGCPLIEYLSL 204
            +D  D+  +      LL GCP++E L L
Sbjct: 167 YIDCVDVQERGFGFVKLLSGCPVLEELVL 195

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 43/301 (14%)

Query: 7   IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 66
           +DRIS L + +L  ILSF+P    V T +LS+ W+  W   S L++D D +H        
Sbjct: 1   MDRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYD-DSYH-------- 51

Query: 67  DGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 126
                G  K    F Y   +L   +  +I+ ++ +L     +++I L      I +AL  
Sbjct: 52  ----TGDYKSFSQFVY--RSLLSNNAPVIKHLHLNLGPDCPAIDIGL-----WIGFALTR 100

Query: 127 NVKELSLELL---GNPRFNLPEIILCSNSIEILTLAG-LKLESPRSVKLSSLTKLFLMRV 182
            +++L + +     +  F+LP  +  S+++E L L   + L+ P SV L SL  L L  V
Sbjct: 101 RLRQLKINIRTSSNDASFSLPSSLYTSDTLETLRLINFVLLDVPSSVCLPSLKVLHLKTV 160

Query: 183 D-ATDLVLQSLLIGCPLIEYLSLQ------------LCPGLKNLEL--SGLTKLNKFEVC 227
           D   D  L SLL GCP +E L ++            + P L+ L +      + +++ V 
Sbjct: 161 DYEDDASLPSLLFGCPNLEELFVERHDQDLEMDVTFVVPSLRRLSMIDKNYGQCDRY-VI 219

Query: 228 DAEELQRLCIIAQDVQEVSIQGPLP--FQCKFNLASCKFLKYLRFALTHIKDEWLCNQIS 285
           D   L+ L I    V +V     +P   +   ++      K+LR ALT ++   LC  +S
Sbjct: 220 DVPSLKYLNITDDAVYDVRQIENMPELVEAHVDITQGVTHKFLR-ALTSVRQLSLCLSLS 278

Query: 286 K 286
           +
Sbjct: 279 E 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKX3|FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana GN=At2g04230 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 19/200 (9%)

Query: 8   DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 67
           DRIS+LP+ +L  ILS LP    + T VLS+ W+  W     LKFDS+ F+ VF +D+ D
Sbjct: 13  DRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSN-FNPVFDDDNID 71

Query: 68  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCN 127
            +   +         + +TL +    ++  ++ S     D L + +      I  A    
Sbjct: 72  PTMFSEN--------VYKTLSLHKAPVLESLHLSFEGRTDCLHVGI-----WIATAFARG 118

Query: 128 VKELSLELL--GNPRFNLPEIILCSN-SIEILTLA-GLKLESPRSVKLSSLTKLFLMRVD 183
           V++L L+     +    LP ++   N S+EIL L   + L+ P  V L SL KL+L +V 
Sbjct: 119 VRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPSRVCLKSLRKLYLDQVH 178

Query: 184 ATD-LVLQSLLIGCPLIEYL 202
             D   + +LL GCP ++ L
Sbjct: 179 FKDEESVCNLLCGCPSLQDL 198

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 17/198 (8%)

Query: 8   DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 67
           D IS+LP+ I+ +IL+ L     ++T VLS  W+  W T + L FD     +  +  SND
Sbjct: 6   DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFD-----EKCVSPSND 60

Query: 68  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCN 127
                   +R I   +     + H   I     S      S + C P IDQ + +     
Sbjct: 61  RCVVETNLVRFITGVL-----LLHQGPIHKFQLS-----TSFKQCRPDIDQWLLFLSRNG 110

Query: 128 VKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVK-LSSLTKLFLMRVDATD 186
           +KEL L+ LG   F +P  +     +  L L   + + P+  K  S L  L L ++    
Sbjct: 111 IKELVLK-LGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAP 169

Query: 187 LVLQSLLIGCPLIEYLSL 204
            V++SL+ GCPL+E+LSL
Sbjct: 170 EVIESLISGCPLLEFLSL 187

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.908	0.744	0.336	3e-41
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.908	0.744	0.336	4e-41
224124628	524	f-box family protein [Populus trichocarp	0.875	0.641	0.285	4e-35
224121624	528	predicted protein [Populus trichocarpa]	0.843	0.613	0.305	9e-31
357454743	761	Agglutinin alpha chain [Medicago truncat	0.854	0.431	0.291	1e-30
357454739	607	F-box/FBD/LRR-repeat protein [Medicago t	0.869	0.550	0.294	3e-26
356557323	833	PREDICTED: uncharacterized protein LOC10	0.864	0.398	0.280	6e-26
147833276	521	hypothetical protein VITISV_011919 [Viti	0.828	0.610	0.329	4e-25
224119688	563	f-box family protein [Populus trichocarp	0.838	0.571	0.309	6e-25
255590973	337	conserved hypothetical protein [Ricinus	0.671	0.765	0.307	1e-24

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 193/377 (51%), Gaps = 28/377 (7%)

Query: 7   IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 66
           +D IS LP+PIL HILSFL   Q +QT +LS+ W   W TF   +FD +FFH        
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFH-------- 52

Query: 67  DGSEAGKQKLR-EIFNYIKETLRIRHNEMIRLMNFSL---FVPGDSLEICLPYIDQCIFY 122
              E+  Q  R  + N++++TL+    ++  L  F L   F   +S+ +    +D+ I Y
Sbjct: 53  --IESKLQNKRFHLINFVEQTLK----QLKCLRKFKLHTDFPEPNSMVV----VDRWIDY 102

Query: 123 ALGCNVKELSLELL--GNPRFNLPEIILCSNSIEILTLAGLKL-ESPRSVKLSSLTKLFL 179
            L   V+EL + +      R+NLP+ +  + S+ +LT+   KL  S    KL S+  + L
Sbjct: 103 VLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSL 162

Query: 180 MRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIA 239
           + V A D  ++ L+  CP I+++ L  C GL+NL L    +L   EV +   L      A
Sbjct: 163 LGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNSGLYEFGTKA 222

Query: 240 QDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 298
            ++Q    +G   FQ C  N++SCK LK L+ ++  I D+W     S+FPLLE L ++ C
Sbjct: 223 MNLQAFEFRGQ--FQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYC 280

Query: 299 DDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLF 358
             L+S+ ISS  LK   +  C  +  V I    LS  ++SGDVISF L A   S++ +  
Sbjct: 281 HMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGDVISFSLNAPALSQADIEL 340

Query: 359 QTENSSSEWYTEHFNFL 375
                 + W  +   FL
Sbjct: 341 SPRIFDNPWVVKQIEFL 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 194/377 (51%), Gaps = 28/377 (7%)

Query: 7   IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 66
           +D IS LP+PIL HILSFL   Q +QT +LS+ W   W TF   +FD +FFH        
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFH-------- 52

Query: 67  DGSEAGKQKLR-EIFNYIKETLRIRHNEMIRLMNFSL---FVPGDSLEICLPYIDQCIFY 122
              E+  Q  R  + N++++TL+    ++  L  F L   F   +S+ +    +D+ I Y
Sbjct: 53  --IESKLQNKRFHLINFVEQTLK----QLKCLRKFKLHTDFPEPNSMVV----VDRWIDY 102

Query: 123 ALGCNVKELSLELL--GNPRFNLPEIILCSNSIEILTLAGLKL-ESPRSVKLSSLTKLFL 179
            L   V+EL + +      R+NLP+ +  + S+ +LT+   KL  S    KL S+  + L
Sbjct: 103 VLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSL 162

Query: 180 MRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIA 239
           + V A D  ++ L+  CP I+++ L  C GL++L L    +L   EV +   L      A
Sbjct: 163 LGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNSGLYEFGTKA 222

Query: 240 QDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 298
            ++Q    +G   FQ C  N++SCK LK L+ ++  I D+W     S+FPLLE L ++ C
Sbjct: 223 MNLQAFEFRGQ--FQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYC 280

Query: 299 DDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLGAITFSKSHLLF 358
             L+S+ ISS  LK   +  C  +  V I A  LS  ++SGDVISF L A   S++ +  
Sbjct: 281 HMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGDVISFSLNAPALSQADIEL 340

Query: 359 QTENSSSEWYTEHFNFL 375
                 + W  +   FL
Sbjct: 341 SPRIFDNPWVVKQIEFL 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124628|ref|XP_002319379.1| f-box family protein [Populus trichocarpa] gi|222857755|gb|EEE95302.1| f-box family protein [Populus trichocarpa]

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 190/389 (48%), Gaps = 53/389 (13%)

Query: 4   LSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLE 63
           +  +D IS LP+PI+ HI+S LP+    +  +LS+ +  AW +F ++  D        LE
Sbjct: 16  IQEVDLISELPDPIIQHIMSSLPYKDAARMSILSKRFASAWTSFPIIFLDETLNMGSCLE 75

Query: 64  DSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSL-FVPGDSLEICLPYIDQCIFY 122
            +      GKQKL    +Y+   L  R  + + L  FS  F   +S E     I+  I Y
Sbjct: 76  LT------GKQKLNSFLSYVGAFLSRRRLD-VSLEKFSFCFCLNNSSEQPNGGIENAICY 128

Query: 123 ALGCNVKELSLELLGN-----PRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKL 177
           A+  NVKEL L+ +G        ++LP  +L + S+ +L+L G  LE P           
Sbjct: 129 AIENNVKELELDFVGKSFKCMAHYSLPMKVLSAQSVMVLSLKGFMLEPP----------- 177

Query: 178 FLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLT-KLNKFEVCDAEELQRLC 236
                       Q+L++  P I+ L L+ C G++ L +S  T K+   E C  + L+++ 
Sbjct: 178 ------------QNLVLDFPFIKELRLEKCKGMQTLSVSSQTLKIVVLESC--QRLEKVE 223

Query: 237 IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA 296
           I A +++  S  G     C  ++ +CK L+YL      I DEW+ +++++F  LE   + 
Sbjct: 224 IDASNLESFSFGGGANSSCSVDITACKSLEYLSLKNAEITDEWIKHEVAQFLRLEVFKVV 283

Query: 297 GCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQL--------GA 348
           GC  L++ ++S+ +LK +E+ DC  L +++I + SL+ F Y G ++  Q+          
Sbjct: 284 GCRLLENFHVSNANLKTVELSDCSNLQKIEIYSRSLNTFVYGGQLMPSQVFIYSPSFHAK 343

Query: 349 ITFSKSHLLFQTENSSSEWYTEHFNFLQC 377
           ++ S  H L        +W++   +FL C
Sbjct: 344 VSLSVDHPL------PHDWFSSFRDFLSC 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 182/367 (49%), Gaps = 43/367 (11%)

Query: 7   IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFD--------SDFFH 58
           +D IS  P+ +LHHILSFLP    ++T +LS+ WK    T+ +L F         SD  +
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 59  QVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQ 118
                 S + S+  +Q L +  NY+  ++         +  F LF+    LE+   ++D+
Sbjct: 61  ------SENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLELS-SHLDK 113

Query: 119 CIFYALGCNVKEL--SLELLGNPRF----NLPEIILCSNSIEILTLAG--LKLESPRSVK 170
            +   +    KE+   ++L G   F    ++P+ I  + S+ +L L G  +KLE    +K
Sbjct: 114 WVQKVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEESFCIK 173

Query: 171 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE 230
           L SL KL L  V   D +L+ ++  CPL+E +SL+ C GLK +++  L +L KFE+    
Sbjct: 174 LHSLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEI--YS 231

Query: 231 ELQRLCIIAQDVQEVSIQGPL--PFQCKFNLAS---------CKFLKYLRFALTHIKDEW 279
            L +        + V I+ P    F C F + S         C+ LK L  + + + +  
Sbjct: 232 HLSK-------PESVEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELL 284

Query: 280 LCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSG 339
           L + + KF +LESL +  C  LK + ISS  LK LEI+ C  +++++I   +L   KY G
Sbjct: 285 LQDLVPKFHVLESLRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCG 344

Query: 340 DVISFQL 346
            V+   L
Sbjct: 345 SVVPVSL 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 178/343 (51%), Gaps = 15/343 (4%)

Query: 7   IDRISNLPEPILHHILSFLPFTQ-TVQTRVLSRTWKRAWHTFSVLKF-DSDFFHQVFLED 64
           +DRIS LP+ +++HILSFL  T+  ++T+ LS+ W+  W +++ L F +  F   +  ED
Sbjct: 41  VDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYEQKFAAGIGPED 100

Query: 65  SNDGSEAGKQKLRE-IFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYA 123
            ++     +Q + + +  Y+   L+I+   ++ +M+F L           P +D  +  A
Sbjct: 101 GSNKENLFRQHVADSLHTYLANNLQIQ-KLLLHMMSFDL--------TDAPLVDSWLTSA 151

Query: 124 LGCNVKELSLELLGNP--RFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMR 181
           +  +++E+ L++      R+ LPE++L S ++  L L+G  L    ++ L  L KL+L +
Sbjct: 152 VSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCILRRCGNIMLPRLQKLYLRK 211

Query: 182 VDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQD 241
           V   + ++ +L+  CP IE L    C GLK L +     L++ E+ +  +L+   I A +
Sbjct: 212 VHLGEQIVTNLISCCPSIEDLRFVQCSGLKFLYIH-CDSLSRLEIHNCNQLKTAYIFAPN 270

Query: 242 VQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL 301
           +      G     CK NL  C  LK L      +  ++  NQ +KFPLLE L +   D +
Sbjct: 271 LDTFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQFNKFPLLEKLDLCIADKM 330

Query: 302 KSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISF 344
           KSI I +R L+ + +  C +L  V+I A  L  F+  G+ + +
Sbjct: 331 KSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKGETMPY 373

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454739|ref|XP_003597650.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355486698|gb|AES67901.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 182/350 (52%), Gaps = 16/350 (4%)

Query: 1   MESLSHIDRISNLPEPILHHILSFL-PFTQTVQTRVLSRTWKRAWHTFSVLKF-DSDFFH 58
           ++S+  +DRIS LP  ++HHILSFL      ++TR LS+ W+  W +F+ L F +  F  
Sbjct: 65  VQSVESVDRISELPNHVIHHILSFLRNVKDAIRTRSLSKRWRTMWFSFAALMFYEQKFVA 124

Query: 59  QVFLEDSNDGSEAGKQKLRE-IFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYID 117
            +  ED ++     +Q + + +  Y+    +I H  ++ + +F L           P +D
Sbjct: 125 GIGPEDGSNKENLFRQHVADSLHTYLANNAQI-HKFLLHMTSFDL--------TDAPLVD 175

Query: 118 QCIFYALGCNVKELSLEL--LGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLT 175
             +  A+  ++KE+ L++    +  + LPE++L S ++  L L+G  L+S  ++ L  L 
Sbjct: 176 SWLTSAVSQDIKEIDLQVGFKDSKLYTLPEVVLSSETLTGLRLSGCILQSFSNIMLPRLQ 235

Query: 176 KLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRL 235
           KL+L ++  ++L+L SL+  CP IE L L  C GLK L +   + L++ ++ +  +L+++
Sbjct: 236 KLYLRKIHLSELILLSLISRCPSIEDLRLIQCSGLKFLCILHPS-LSRVDIHNCNQLKKV 294

Query: 236 CIIAQDVQEVSIQGPLPFQCKFNLASCK-FLKYLRFALTHIKDEWLCNQISKFPLLESLL 294
            IIA ++      G     CK  L  C   LK L      +  ++  NQ S+F LLE L 
Sbjct: 295 DIIAPNLDTFWFCGKKSTPCKVGLQGCNDSLKNLTIEHPLVSRDFCKNQFSRFSLLEKLD 354

Query: 295 IAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISF 344
           +   D  KS  I +RSL+ + +    +L   +I A  L  F+  G+ +S+
Sbjct: 355 LCIFDKTKSFTIFNRSLQRIALKGGKKLTYAQIHAPKLVSFELKGENMSY 404

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 172/342 (50%), Gaps = 10/342 (2%)

Query: 7   IDRISNLPEPILHHILSFL-PFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDS 65
           +DRIS  P+ ++HHILS L      ++T VLS+ W+  W+++SVL FD   F        
Sbjct: 159 VDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAKI---- 214

Query: 66  NDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALG 125
             G E    K     +Y+  +L   + + +++    L +    L    P ++  +  A+ 
Sbjct: 215 --GHEDSSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLELWLNIAIY 272

Query: 126 CNVKELSLEL-LGNPR-FNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVD 183
            N+KEL L + + N   + LP+ +  S ++  + L+G KL +  ++KL  L KL+L ++ 
Sbjct: 273 RNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGTCNNIKLPYLQKLYLRKIP 332

Query: 184 ATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQ 243
             +  +Q+L+  C  +E L +  C GLK+L +S L +L + E+    +L+++ I A ++ 
Sbjct: 333 LVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIHHCIQLKKVEISAPNLD 392

Query: 244 EVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL-K 302
                G     CK +L  C  LK L      +  ++  NQ S FPLLE L ++  ++  +
Sbjct: 393 TFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQFSNFPLLEKLDLSMSNNKSR 452

Query: 303 SINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISF 344
            I IS+  L+   +  C +L  V + A +L  F+  G+ + +
Sbjct: 453 FIIISNPHLEKFTLKGCKKLGIVLVEAPNLLSFECKGETMPW 494

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 163/340 (47%), Gaps = 22/340 (6%)

Query: 8   DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 67
           DRIS+LP+ IL  IL  LP     ++ +LS+ W++   +         F    FLE    
Sbjct: 6   DRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKL--SPFSSLSLLMFQCPDFLESCRK 63

Query: 68  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCN 127
            ++          N I  +LR+R  + + L    L +  D +E     ID  I  AL   
Sbjct: 64  NTDVS-----SFINAIDSSLRLRPKD-VNLARLRLHLDLDDIE-SESLIDSWIDAALERK 116

Query: 128 VKELSLELLGNPR-----FNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRV 182
           VKEL L L   PR     + LP  I  + +I +L+L   +LE    + L +L KL L ++
Sbjct: 117 VKELDLYL--RPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEICGDIDLPALRKLCLRQI 174

Query: 183 DATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDV 242
              +  ++ L+  CPLIE L +  C GL+ L +SGL  L++ EV     L+R+ I A  +
Sbjct: 175 RCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVICCYNLRRIEIDAPSL 234

Query: 243 QEVSIQ-GPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL 301
           Q +    G LP  C   L  C+FL+ L     HI +++L N  S FP LE L I     L
Sbjct: 235 QHLVYHCGRLP--CDMVLTPCEFLRELILHDPHITNDFLQNLDSGFPNLERLEIDST-RL 291

Query: 302 KSINISSRSLKLLE--IYDCLRLVEVKIAASSLSIFKYSG 339
           + I IS   LK LE  +    +  ++KI A +L  F YSG
Sbjct: 292 QRIEISHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSG 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 169/339 (49%), Gaps = 17/339 (5%)

Query: 8   DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 67
           DRIS LP+ +LH+ILS+L     V+  VLS+TW R   +F V    SDF   V L     
Sbjct: 35  DRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPV----SDFSEDVLLLGKRY 90

Query: 68  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICL-PYIDQCIFYALGC 126
             +  K K     ++++++L  +H+   R   F L +  DS +  L    D  +  A  C
Sbjct: 91  EIQDWKNKF---IDFVQDSLLAQHHHNTRSHKFRLSMDLDSYDPQLTSRADHLLELATKC 147

Query: 127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAG-LKLESPR-SVKLSSLTKLFLMRVDA 184
            V E  L       + LP  +L +  I +L L G  KL  PR ++   SL  L LM V  
Sbjct: 148 GVYEFDLNFQNISHYCLPRALLSAEEITVLRLNGNYKLSLPRDAINWPSLRVLSLMNVRV 207

Query: 185 TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEE-LQRLCIIAQDVQ 243
            + +LQ+L+ GCPLIE L+L  C G+K++ +SG  KL + EV + +  L+R+ I    ++
Sbjct: 208 DEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKEVEVNEGDSVLERMEIHVPSLR 267

Query: 244 EVS-IQGPLPFQCKFNLASCKFLKYLR---FALTHIKDEWLCNQISKFPLLESL-LIAGC 298
                 G +      ++  C+ L+ L+   + +T +  +   + I++FP L+ L L    
Sbjct: 268 TFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQVFQDLIAQFPALKVLALNCYA 327

Query: 299 DDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKY 337
             +  I IS+  L+ L+++    L +V I + SL  FK+
Sbjct: 328 TSVSRIKISNPQLEKLQLWSSA-LTKVTITSPSLHSFKH 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590973|ref|XP_002535407.1| conserved hypothetical protein [Ricinus communis] gi|223523200|gb|EEF26976.1| conserved hypothetical protein [Ricinus communis]

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 143/270 (52%), Gaps = 12/270 (4%)

Query: 7   IDRISNLPEPILHHILSFLPFTQ-TVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDS 65
           ID IS LP  ++HHILS L   +   +T +LS+ W+  W ++ +L FD   F +   +  
Sbjct: 69  IDLISQLPNHVIHHILSLLRCKKDAARTSILSKRWRAIWASYLILDFDQRKFQKQEKKVR 128

Query: 66  NDGSEAGKQKLREIFN-------YIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQ 118
              S++ K+K  EI         +++ TLR    +   +  F L +   ++E+   ++DQ
Sbjct: 129 RLSSKSKKRKEVEINKKNEMFRAFVENTLRTHIEQDSGIQKFKLHLTSYNVELS-AHVDQ 187

Query: 119 CIFYALGCNVKELSLELLGNPR--FNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTK 176
            I +A   N+K+L L +       +NLP+ +  +++I  L ++G KL +   +KLS+L K
Sbjct: 188 WIGFATTNNIKDLDLYIPSKKDRCYNLPQTVFAASTITALRISGCKLRTCIDIKLSNLQK 247

Query: 177 LFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLC 236
           L   ++     ++Q+L++ CPLI+ L L  C GLK L LS   KL + ++     L+ + 
Sbjct: 248 LCFAKLRVDGQMIQNLMLSCPLIDDLRLIYCTGLKTLLLSS-NKLYRVDIHFCHGLKNVE 306

Query: 237 IIAQDVQEVSIQGPLPFQCKFNLASCKFLK 266
           +++ ++Q     G    +CK NLA CK LK
Sbjct: 307 VLSPNLQTFWYHGKKSTRCKINLAMCKDLK 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2151246	258	AT5G02920 "AT5G02920" [Arabido	0.348	0.519	0.302	2.6e-18
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.617	0.519	0.272	4.2e-16
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.471	0.435	0.313	5.5e-12
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.296	0.25	0.294	6.4e-12
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.471	0.404	0.32	2.3e-11
TAIR|locus:2088882	465	AT3G28410 "AT3G28410" [Arabido	0.296	0.245	0.294	3.2e-11
TAIR|locus:2136834	419	AT4G26340 "AT4G26340" [Arabido	0.721	0.661	0.269	7.6e-11
TAIR|locus:2081157	520	AT3G59200 "AT3G59200" [Arabido	0.489	0.361	0.317	1.2e-10
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.778	0.652	0.259	7.4e-10
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.5	0.420	0.289	1.5e-09

TAIR|locus:2151246 AT5G02920 "AT5G02920" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
 Identities = 42/139 (30%), Positives = 69/139 (49%)

Query:   115 YIDQCIFYALGCNVKELSLELLGNPRFN-LPEIILCSNSIEILTLAGLKLESPRSVKLSS 173
             ++   I +A+  NV  LSL     P  N  P+    S+S++ + L    L     V  +S
Sbjct:   110 HVHSSIEFAMSHNVDNLSLAFSSFPPCNKFPDFFYTSSSLKRVELRSASLTPSCIVSWTS 169

Query:   174 LTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV----CDA 229
             L  L L R + +D     +L GCP++E LSL+ C  LK L+LS   +L + E+    C  
Sbjct:   170 LRDLSLTRCNLSDKSFLKILSGCPILESLSLKFCESLKYLDLSKSLRLTRLEIERRSCFR 229

Query:   230 EELQRLCIIAQDVQEVSIQ 248
             E +Q + I+A  +  + ++
Sbjct:   230 EPMQSMQIVAPHIHYLRLR 248

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
 Identities = 74/272 (27%), Positives = 134/272 (49%)

Query:    82 YIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNP-- 139
             +I ETL  R+    ++M F L     SL   +P+++  I +A+  NV  LSL+L      
Sbjct:    84 FIDETLT-RYTAS-KMMRFHLHT---SLINNVPHLESWIKFAMSRNVDHLSLDLWNQVAN 138

Query:   140 RFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLI 199
             +F  P+    ++S++ LT+    L+   ++    L KL+L     +D  + ++L GCP++
Sbjct:   139 KFKFPDFFHINSSLKQLTVV---LDFSDTMIAICLKKLYLSTCLLSDESMANILFGCPIL 195

Query:   200 EYLSLQLCPGLKNLELSGLTKLNKFEV-CD--AEELQRLCIIAQDVQEVSIQGP-LPFQC 255
             E L+L  C GL+ L+LS   +L   E+ C+    EL  + I+A     + ++   LP  C
Sbjct:   196 ESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAMQIVAPHTHCLRLRNSKLP--C 253

Query:   256 KF-NLASCKFLKYL----RFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRS 310
                +++S K  K       F+ T IK ++L  Q++   +LE L      +++ + +    
Sbjct:   254 SLVDVSSLKEAKLNICIDSFSKT-IKADFL--QVTLLKMLEKL-----HNVEKLTLGGNF 305

Query:   311 LKLLEIYDCLR-----LVEVKIAASSLSIFKY 337
             L++L + + LR     + +VK       IF+Y
Sbjct:   306 LQILSVAE-LRGVPFPMFKVKDLTLETVIFQY 336

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 5.5e-12, P = 5.5e-12
 Identities = 62/198 (31%), Positives = 94/198 (47%)

Query:     8 DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 67
             D IS+LP+ I+ +IL+ L     ++T VLS  W+  W T + L FD     +  +  SND
Sbjct:     6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFD-----EKCVSPSND 60

Query:    68 GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCN 127
                     +R    +I   L + H   I    F L     S + C P IDQ + +     
Sbjct:    61 RCVVETNLVR----FITGVLLL-HQGPIH--KFQL---STSFKQCRPDIDQWLLFLSRNG 110

Query:   128 VKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVK-LSSLTKLFLMRVDATD 186
             +KEL L+L G   F +P  +     +  L L   + + P+  K  S L  L L ++    
Sbjct:   111 IKELVLKL-GEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAP 169

Query:   187 LVLQSLLIGCPLIEYLSL 204
              V++SL+ GCPL+E+LSL
Sbjct:   170 EVIESLISGCPLLEFLSL 187

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
 Identities = 35/119 (29%), Positives = 61/119 (51%)

Query:   113 LPYIDQCIFYALGCNVKELSL---ELLGNPRFNLPEIILCSNSIEIL--TLAGLKLESPR 167
             +P +D  I +AL  NV+ LS+   +   +  +  P+I   S+S+++L  TL    +    
Sbjct:   104 VPQVDSWIEFALSRNVQNLSVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTC 163

Query:   168 SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 226
             +V   SL  L L      D  + ++L GCP++E L+L  C  L+ L+LS    L + ++
Sbjct:   164 TVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDI 222

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
 Identities = 64/200 (32%), Positives = 100/200 (50%)

Query:     8 DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSND 67
             DRIS+LP+ +L  ILS LP    + T VLS+ W+  W     LKFDS+F + VF +D+ D
Sbjct:    13 DRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNF-NPVFDDDNID 71

Query:    68 GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCN 127
              +   +         + +TL +    ++  ++ S     D    CL ++   I  A    
Sbjct:    72 PTMFSEN--------VYKTLSLHKAPVLESLHLSFEGRTD----CL-HVGIWIATAFARG 118

Query:   128 VKELSLELL--GNPRFNLPEIILCSN-SIEILTL-AGLKLESPRSVKLSSLTKLFLMRVD 183
             V++L L+     +    LP ++   N S+EIL L   + L+ P  V L SL KL+L +V 
Sbjct:   119 VRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPSRVCLKSLRKLYLDQVH 178

Query:   184 ATDLV-LQSLLIGCPLIEYL 202
               D   + +LL GCP ++ L
Sbjct:   179 FKDEESVCNLLCGCPSLQDL 198

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 35/119 (29%), Positives = 59/119 (49%)

Query:   113 LPYIDQCIFYALGCNVKELSL---ELLGNPRFNLPEIILCSNSIEIL--TLAGLKLESPR 167
             +P +D  I +AL  NV+ LS+   +      +  P+I   S+S++ L  TL    +    
Sbjct:   105 VPQVDSWIEFALSRNVQNLSVFVRDFTYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTC 164

Query:   168 SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 226
             +V   SL  L L      D  + ++L GCP++E L+L  C  L+ L+LS    L + ++
Sbjct:   165 AVSWKSLRNLTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDI 223

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136834 AT4G26340 "AT4G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 7.6e-11, P = 7.6e-11
 Identities = 87/323 (26%), Positives = 148/323 (45%)

Query:     7 IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSN 66
             +DRIS L + +L  ILSF+P    V T +LS+ W+  W   S L++D D +H        
Sbjct:     1 MDRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYD-DSYH-------- 51

Query:    67 DGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGC 126
                  G  K    F Y   +L   +  +I+ ++ +L     +++I L      I +AL  
Sbjct:    52 ----TGDYKSFSQFVY--RSLLSNNAPVIKHLHLNLGPDCPAIDIGL-----WIGFALTR 100

Query:   127 NVKELSLELL---GNPRFNLPEIILCSNSIEILTLAG-LKLESPRSVKLSSLTKLFLMRV 182
              +++L + +     +  F+LP  +  S+++E L L   + L+ P SV L SL  L L  V
Sbjct:   101 RLRQLKINIRTSSNDASFSLPSSLYTSDTLETLRLINFVLLDVPSSVCLPSLKVLHLKTV 160

Query:   183 D-ATDLVLQSLLIGCPLIEYLSLQ------------LCPGLKNLEL--SGLTKLNKFEVC 227
             D   D  L SLL GCP +E L ++            + P L+ L +      + +++ V 
Sbjct:   161 DYEDDASLPSLLFGCPNLEELFVERHDQDLEMDVTFVVPSLRRLSMIDKNYGQCDRY-VI 219

Query:   228 DAEELQRLCIIAQDVQEV-SIQG-PLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQIS 285
             D   L+ L I    V +V  I+  P   +   ++      K+LR ALT ++   LC  +S
Sbjct:   220 DVPSLKYLNITDDAVYDVRQIENMPELVEAHVDITQGVTHKFLR-ALTSVRQLSLCLSLS 278

Query:   286 KFPLLESLLIAGCDDLKSINISS 308
             +      ++ +    L  +N+S+
Sbjct:   279 EVMCPSGIIFS---QLVHLNLST 298

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081157 AT3G59200 "AT3G59200" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 67/211 (31%), Positives = 95/211 (45%)

Query:     1 MESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQV 60
             M+ +S  DRIS+LP P++ HILSFLP  +   T VLS+ W+  +   + L FD       
Sbjct:     1 MDFVSR-DRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDS----- 54

Query:    61 FLEDSNDGSEAGKQKL-REIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQC 119
                D  DG      +L R    ++   L ++ N  +    FSL     + ++ L  +   
Sbjct:    55 ---DYQDGKPKSDVELSRSFMEFVDRVLALQGNGSVN--KFSLEC--SNYDVDLARVTGW 107

Query:   120 IFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLA---GLKLESPRS-VKLSSLT 175
             I   LG  V EL L +L  P   LP  I  S ++  L L     L L   R  V L  L 
Sbjct:   108 ILNVLGRGVSELDLSILEYP---LPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLK 164

Query:   176 KLFLMRVDATD--LVLQSLLIGCPLIEYLSL 204
              L++  VD  +       LL GCP++E L L
Sbjct:   165 TLYIDCVDVQERGFGFVKLLSGCPVLEELVL 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.4e-10, P = 7.4e-10
 Identities = 85/328 (25%), Positives = 139/328 (42%)

Query:     7 IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFH--QVFLED 64
             +D ISNLPE +L  +L +LP    V++ VLS  W+  W            FH    F  D
Sbjct:    17 VDWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLSYCDFHVRNTFSYD 76

Query:    65 SNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSL-EICLPYIDQCIFYA 123
              N         LR + +++        N    L +F L        E  L  I + I   
Sbjct:    77 HNTF-------LRFVDSFMG------FNSQSCLQSFRLEYDSSGYGEPKLALIRRWINSV 123

Query:   124 LGCNVKELSL--ELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMR 181
             +   VK L +  +   N  F +P  +    ++  LTL GL L SP+ V L SL +L L  
Sbjct:   124 VSRKVKYLGVLDDSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKFVSLPSLKELHLSI 183

Query:   182 VDATD-LVLQSLLIGCPLIEYLSLQ--LCPGLKNLELSGLTKLNKFEVCDAEE-LQRLCI 237
             V   D + L++L+  CP++E L++    C   +   +   + L+   V D +E L    +
Sbjct:   184 VKFADHMALETLISQCPVLENLNINRSFCDDFEFTCVRSQSLLSFTHVADTDEMLNEDLV 243

Query:   238 IAQDVQEVSIQGPLPFQ-CKF---NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESL 293
             +A D  ++        +   F   +LAS              K  +  N ++K  ++   
Sbjct:   244 VAIDAPKLKYLRLSDHRIASFILNDLASLVEADIDTVFNLICKKMFNPNDLNKRNMIRDF 303

Query:   294 LIAGCDDLKSINISSRSLKLLEIYDCLR 321
             L+ G   +K++ I+S +L++  IYD  R
Sbjct:   304 LV-GISSIKTLIIASSTLEV--IYDYSR 328

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
 Identities = 60/207 (28%), Positives = 93/207 (44%)

Query:     1 MESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKF-DSDFFHQ 59
             M+S   +D  S LP+ ++ HILS LP  +   T VL++ W+  +     L F DSDF H 
Sbjct:     1 MDS-EKMDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHP 59

Query:    60 VFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQC 119
                +   DG       LR   +++   L ++    I+   FSL V      +    +D+ 
Sbjct:    60 QEGKREKDGI------LRSFMDFVDRVLALQGASPIK--KFSLNV---KTGVDPDRVDRW 108

Query:   120 IFYALGCNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLES-PRSVKLSSLTKL 177
             I   L   V  L+L +     ++LP EI +    +E+ T  G+ L      + L  L  L
Sbjct:   109 ICNVLQRGVSHLALFMDFEEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPMLKTL 168

Query:   178 FLMRVDATDLVLQSLLIGCPLIEYLSL 204
              L  V+      Q+LL  CP++E L L
Sbjct:   169 VLESVEFGRGQFQTLLPACPVLEELML 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
pfam00646	48	pfam00646, F-box, F-box domain	4e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 8  DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDS 54
            + +LP+ +L  ILS L     ++  ++S+ W+    +  + K   
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.79
KOG4341	483	consensus F-box protein containing LRR [General fu	99.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.28
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.17
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.16
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.92
KOG4341	483	consensus F-box protein containing LRR [General fu	98.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.81
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.68
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.46
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.44
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.41
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.41
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.36
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.24
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.23
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.18
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.31
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.11
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.04
PRK15386	426	type III secretion protein GogB; Provisional	96.95
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.7
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.53
PRK15386	426	type III secretion protein GogB; Provisional	96.52
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.51
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.49
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.17
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.14
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.99
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.3
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.01
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.75
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.52
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	93.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.85
PLN03150	623	hypothetical protein; Provisional	93.8
PLN03150	623	hypothetical protein; Provisional	93.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.63
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.71
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.36
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.36
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	89.05
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	88.01
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	86.91
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.65
PF13013	109	F-box-like_2: F-box-like domain	83.66
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	83.02
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.75

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=5.4e-21  Score=165.79  Aligned_cols=278  Identities=22%  Similarity=0.270  Sum_probs=182.9

Q ss_pred             cCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhcc---cceeeeccccccccccCCCCCcchhhhhhhhhHHHHHHHH
Q 016710           10 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT---FSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKET   86 (384)
Q Consensus        10 is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   86 (384)
                      +..|||||++.||+.|+.+++.+++.|||||.++-+.   |..++...+...+                     +...++
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p---------------------~~l~~l  156 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP---------------------DVLGRL  156 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh---------------------hHHHHH
Confidence            5689999999999999999999999999999975432   1222222222221                     222333


Q ss_pred             HhcccCCcccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCC
Q 016710           87 LRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESP  166 (384)
Q Consensus        87 l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~  166 (384)
                      +.      +++..+++-....   .+ +.+... ...++.++|.++|+........+...+..|..|+.|+|.|..+..+
T Consensus       157 ~~------rgV~v~Rlar~~~---~~-prlae~-~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~  225 (419)
T KOG2120|consen  157 LS------RGVIVFRLARSFM---DQ-PRLAEH-FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP  225 (419)
T ss_pred             Hh------CCeEEEEcchhhh---cC-chhhhh-hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH
Confidence            21      3455555432111   11 211111 1234568999999876666677777788899999999999888744


Q ss_pred             Cc---cCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCcee---ecCC-CCCCceEEecccc-ccceeee
Q 016710          167 RS---VKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNL---ELSG-LTKLNKFEVCDAE-ELQRLCI  237 (384)
Q Consensus       167 ~~---~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~---~i~~-~~~L~~L~l~~~~-~l~~~~~  237 (384)
                      ..   +.=.+|+.|+++.+.- +..++..++++|..|.+|+|+.|...+..   .+.+ -++|+.|.+++|. ++..   
T Consensus       226 I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~---  302 (419)
T KOG2120|consen  226 IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK---  302 (419)
T ss_pred             HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh---
Confidence            32   2457899999999877 88889999999999999999998655321   1111 2466666666654 1110   


Q ss_pred             cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccE
Q 016710          238 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKL  313 (384)
Q Consensus       238 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~  313 (384)
                                     .....-...||+|.+|+|+.+....+.....+.+|+.|++|.++.|..+..-    ....|.|.+
T Consensus       303 ---------------sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y  367 (419)
T KOG2120|consen  303 ---------------SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY  367 (419)
T ss_pred             ---------------hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence                           0111224568999999998876443466777788999999999999877432    234589999


Q ss_pred             Eeccccccce--e-ecccCCCCceeEE
Q 016710          314 LEIYDCLRLV--E-VKIAASSLSIFKY  337 (384)
Q Consensus       314 L~l~~c~~l~--~-~~~~~~~L~~L~l  337 (384)
                      |++.+|..-.  + +..-+|+|+.-..
T Consensus       368 Ldv~g~vsdt~mel~~e~~~~lkin~q  394 (419)
T KOG2120|consen  368 LDVFGCVSDTTMELLKEMLSHLKINCQ  394 (419)
T ss_pred             EEeccccCchHHHHHHHhCccccccce
Confidence            9999886543  2 2245777654433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.68  E-value=9.1e-19  Score=158.48  Aligned_cols=163  Identities=24%  Similarity=0.345  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHhcCCCccceeehhhhhhhhhhh------hcccceeeeccccccccccCCCCCcchhhhhhhhhHHHHHHH
Q 016710           12 NLPEPILHHILSFLPFTQTVQTRVLSRTWKRA------WHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKE   85 (384)
Q Consensus        12 ~LPdeil~~I~s~L~~~~~~~~~~vskrW~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   85 (384)
                      .||.|++.+|||+|+.+.++|++++|+.|..+      |+.+...++..+.-.+                      .|..
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~----------------------VV~~  131 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGG----------------------VVEN  131 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCc----------------------ceeh
Confidence            49999999999999999999999999999865      3332222111110000                      0111


Q ss_pred             HHhcccCCcccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeC-CCCCcccCccccCCCCccEEEecCeeec
Q 016710           86 TLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELL-GNPRFNLPEIILCSNSIEILTLAGLKLE  164 (384)
Q Consensus        86 ~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~-~~~~~~lp~~l~~~~~L~~L~L~~~~l~  164 (384)
                       +..|.+                                 ..++++.+..+ +.....+-.....|+++++|.+.+|..-
T Consensus       132 -~~~Rcg---------------------------------g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i  177 (483)
T KOG4341|consen  132 -MISRCG---------------------------------GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI  177 (483)
T ss_pred             -Hhhhhc---------------------------------cccccccccccccCCcchhhHHhhhCCchhhhhhhcceec
Confidence             112222                                 33444444332 1223333334445677777766666422


Q ss_pred             CC-----CccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCcee----ecCCCCCCceEEecccc
Q 016710          165 SP-----RSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNL----ELSGLTKLNKFEVCDAE  230 (384)
Q Consensus       165 ~~-----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~----~i~~~~~L~~L~l~~~~  230 (384)
                      ..     -+..|++|+.|+|..|.. ++..++.+..+||+|++|+++.|+.++.-    ...++..++.+...+|.
T Consensus       178 Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~  253 (483)
T KOG4341|consen  178 TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL  253 (483)
T ss_pred             cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence            11     112567777777777554 66666667777777777777777655331    11234455566555665

>PLN03210 Resistant to P

Probab=99.28  E-value=2.7e-11  Score=130.49  Aligned_cols=193  Identities=21%  Similarity=0.231  Sum_probs=98.7

Q ss_pred             ccCCCCccEEEecCee-ec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecC-CCCCCce
Q 016710          147 ILCSNSIEILTLAGLK-LE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELS-GLTKLNK  223 (384)
Q Consensus       147 l~~~~~L~~L~L~~~~-l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~-~~~~L~~  223 (384)
                      +..+++|+.|+|+++. +. .+....+++|++|+|.+|..- ..+...+..+++|+.|++.+|..++.+... .+++|+.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~  708 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR  708 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence            3344555555555432 11 222234555666665555421 111222344566666666666555433221 3456666


Q ss_pred             EEeccccccceeeecCCceeEEEEeCcccccceecc------------------------------ccCccCcEEEeecc
Q 016710          224 FEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNL------------------------------ASCKFLKYLRFALT  273 (384)
Q Consensus       224 L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~------------------------------~~~~~L~~L~L~~~  273 (384)
                      |.+++|..+..+....++|+.|.++++.....+..+                              ..+++|+.|++.++
T Consensus       709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            777666544444333456666666554422211110                              11245666666555


Q ss_pred             ccchHHHHHHhccCCCcceEeeccccccccccc--CCCcccEEeccccccceeecccCCCCceeEEeccc
Q 016710          274 HIKDEWLCNQISKFPLLESLLIAGCDDLKSINI--SSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDV  341 (384)
Q Consensus       274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~  341 (384)
                      ..... +...+.++++|+.|+|++|..++.+..  ..++|++|++++|..+..++....+|+.|+++++.
T Consensus       789 ~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~  857 (1153)
T PLN03210        789 PSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG  857 (1153)
T ss_pred             CCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC
Confidence            42211 233456778888888888876665443  34678888888776665544444445555554443

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.17  E-value=9.3e-11  Score=125.23  Aligned_cols=215  Identities=14%  Similarity=0.093  Sum_probs=100.6

Q ss_pred             CCCcEEEEEeCCCCCcccCcccc-CCCCccEEEecCeeecC-CCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          126 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLES-PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      +.++.|++..+.. ...+|..++ .+++|++|+++++.+.. .....+++|++|+|+++.+.... ...+..+++|+.|+
T Consensus        93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~  170 (968)
T PLN00113         93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI-PNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccC-ChHHhcCCCCCEEE
Confidence            5666666643221 124555544 56667777776665431 11224566666666666552211 12234556666666


Q ss_pred             eeeCCCCce--eecCCCCCCceEEecccccc---ceeeecCCceeEEEE------------------------eCcccc-
Q 016710          204 LQLCPGLKN--LELSGLTKLNKFEVCDAEEL---QRLCIIAQDVQEVSI------------------------QGPLPF-  253 (384)
Q Consensus       204 L~~c~~~~~--~~i~~~~~L~~L~l~~~~~l---~~~~~~~p~L~~L~l------------------------~~~~~~-  253 (384)
                      +.+|.....  ..+..+++|+.|++.+|...   +......++|+.|++                        +++... 
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  250 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG  250 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence            665542211  12233455555555554311   111112344444444                        443311 


Q ss_pred             cceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccccceee---cc
Q 016710          254 QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV---KI  327 (384)
Q Consensus       254 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~~~---~~  327 (384)
                      ..+..+..+++|+.|++.++.+.+. +...+..+++|+.|++++|....   ......++|++|++.++.-...+   ..
T Consensus       251 ~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        251 PIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             ccChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence            1222334445555555555443321 11223345556666665543211   11223456666666654322222   24


Q ss_pred             cCCCCceeEEeccccc
Q 016710          328 AASSLSIFKYSGDVIS  343 (384)
Q Consensus       328 ~~~~L~~L~l~~~~~~  343 (384)
                      .+++|++|++.+|.+.
T Consensus       330 ~l~~L~~L~L~~n~l~  345 (968)
T PLN00113        330 SLPRLQVLQLWSNKFS  345 (968)
T ss_pred             cCCCCCEEECcCCCCc
Confidence            5777777777777653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.16  E-value=1.1e-10  Score=124.55  Aligned_cols=213  Identities=18%  Similarity=0.130  Sum_probs=105.6

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  202 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  202 (384)
                      +++++|++..+.. ...+|..+..+++|++|++++|.+.  .+.. ..+++|++|+|++|.+.... ...+..+++|+.|
T Consensus       140 ~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L  217 (968)
T PLN00113        140 PNLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWI  217 (968)
T ss_pred             CCCCEEECcCCcc-cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEE
Confidence            4555555543221 2245555666777777777776543  2322 25677777777776652211 1224456677777


Q ss_pred             EeeeCCCCcee--ecCCCCCCceEEeccccc---cceeeecCCceeEEEEeCcccc-cceeccccCccCcEEEeeccccc
Q 016710          203 SLQLCPGLKNL--ELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHIK  276 (384)
Q Consensus       203 ~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~---l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~  276 (384)
                      .+.+|......  .+..+++|+.|++.+|..   +.......++|++|++.++... ..+..+..+++|++|++++|.+.
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            77666433211  234556777777776641   1111124556677766655421 12223445566666666655543


Q ss_pred             hHHHHHHhccCCCcceEeecccccccc---cccCCCcccEEeccccccceeec---ccCCCCceeEEeccc
Q 016710          277 DEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDV  341 (384)
Q Consensus       277 ~~~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~  341 (384)
                      .. +...+.++++|+.|+++++.....   .....++|+.|++.++.-...++   ..+++|+.|++++|.
T Consensus       298 ~~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        298 GE-IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             cC-CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            22 233344556666666655442211   11233555555555443211111   234445555554443

>PLN03210 Resistant to P

Probab=98.98  E-value=1.2e-09  Score=117.72  Aligned_cols=209  Identities=18%  Similarity=0.249  Sum_probs=116.2

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CCCcc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  202 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  202 (384)
                      .+++.+++..+. ....+|. +..+++|+.|+|++|...  .|... .+++|+.|++++|..-. .+.. ...++.|+.|
T Consensus       634 ~~Lk~L~Ls~~~-~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~-~i~l~sL~~L  709 (1153)
T PLN03210        634 TGLRNIDLRGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPT-GINLKSLYRL  709 (1153)
T ss_pred             CCCCEEECCCCC-CcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCC-cCCCCCCCEE
Confidence            577777775432 1344453 556788888888876432  33333 57788888887764300 0100 0146677777


Q ss_pred             EeeeCCCCceeecCCCCCCceEEecccc--ccce------------------------------eeecCCceeEEEEeCc
Q 016710          203 SLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQR------------------------------LCIIAQDVQEVSIQGP  250 (384)
Q Consensus       203 ~L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~------------------------------~~~~~p~L~~L~l~~~  250 (384)
                      .+.+|..+...... .++|+.|++.++.  .++.                              .....++|+.|.++++
T Consensus       710 ~Lsgc~~L~~~p~~-~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        710 NLSGCSRLKSFPDI-STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             eCCCCCCccccccc-cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            77777544322111 1244444444332  0000                              0012356777777665


Q ss_pred             c-cccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc-----------------------c
Q 016710          251 L-PFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN-----------------------I  306 (384)
Q Consensus       251 ~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~-----------------------~  306 (384)
                      . ....+..+..+++|+.|++.+|..... +... .++++|+.|++++|..+..+.                       .
T Consensus       789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~~-~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~  866 (1153)
T PLN03210        789 PSLVELPSSIQNLHKLEHLEIENCINLET-LPTG-INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIE  866 (1153)
T ss_pred             CCccccChhhhCCCCCCEEECCCCCCcCe-eCCC-CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHh
Confidence            4 222344466788888888877642111 1111 146777888887776543221                       2


Q ss_pred             CCCcccEEeccccccceeec---ccCCCCceeEEeccc
Q 016710          307 SSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDV  341 (384)
Q Consensus       307 ~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~  341 (384)
                      .+++|+.|++.+|..+..++   ..+++|+.+++++|.
T Consensus       867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            34678888888888777554   346777777887774

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=2e-10  Score=105.50  Aligned_cols=198  Identities=12%  Similarity=0.070  Sum_probs=141.3

Q ss_pred             CCCCccEEEecCeeecCCC----ccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCC---ceeecCCCCC
Q 016710          149 CSNSIEILTLAGLKLESPR----SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGL---KNLELSGLTK  220 (384)
Q Consensus       149 ~~~~L~~L~L~~~~l~~~~----~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~---~~~~i~~~~~  220 (384)
                      ..+.|++..|.++.+..+.    ...||+++.|+|+.+-+ ....+..+++.+|+|+.|+++.+...   .......+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4678888888888776333    22699999999999998 77788899999999999999987544   2222235689


Q ss_pred             CceEEecccc----ccceeeecCCceeEEEEeCcccc-cceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEee
Q 016710          221 LNKFEVCDAE----ELQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLI  295 (384)
Q Consensus       221 L~~L~l~~~~----~l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l  295 (384)
                      |+.|.++.|.    .+..+...+|+|+.|.+.++... .......-+..|+.|+|+++.+.+..-......+|+|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            9999999997    55666778999999999887411 111123336789999999988766554556778999999999


Q ss_pred             ccccc--cc--c-----cccCCCcccEEeccccc--cceee--cccCCCCceeEEeccccccce
Q 016710          296 AGCDD--LK--S-----INISSRSLKLLEIYDCL--RLVEV--KIAASSLSIFKYSGDVISFQL  346 (384)
Q Consensus       296 ~~c~~--l~--~-----~~~~~~~L~~L~l~~c~--~l~~~--~~~~~~L~~L~l~~~~~~~~~  346 (384)
                      +.|..  +.  .     ....+++|++|.+....  .+.++  ....++|..|.+.++.++.++
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence            88651  11  1     12345899999987432  23322  245777788877777664444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.81  E-value=3.1e-10  Score=103.65  Aligned_cols=219  Identities=17%  Similarity=0.156  Sum_probs=156.0

Q ss_pred             HhCCCcEEEEEeCCCCC-cccCccccCCCCccEEEecCeeecC-----CCccCCCCCCeEEeeeeec-ChHHHHHHHcCC
Q 016710          124 LGCNVKELSLELLGNPR-FNLPEIILCSNSIEILTLAGLKLES-----PRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGC  196 (384)
Q Consensus       124 ~~~~l~~L~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~~~l~~-----~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~  196 (384)
                      ..+.++.+.+..|.... ..+......|++|++|++++|..-.     +....+..++.+.+.+|.- .++.+...-..|
T Consensus       188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~  267 (483)
T KOG4341|consen  188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC  267 (483)
T ss_pred             hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence            34677888776543222 2233234468889999988885431     1122567788887788766 777777777788


Q ss_pred             CCccEEEeeeCCCCceee---cC-CCCCCceEEecccccccee-----eecCCceeEEEEeCcc---cccceeccccCcc
Q 016710          197 PLIEYLSLQLCPGLKNLE---LS-GLTKLNKFEVCDAEELQRL-----CIIAQDVQEVSIQGPL---PFQCKFNLASCKF  264 (384)
Q Consensus       197 p~Le~L~L~~c~~~~~~~---i~-~~~~L~~L~l~~~~~l~~~-----~~~~p~L~~L~l~~~~---~~~~~~~~~~~~~  264 (384)
                      +-+-++++..|..++...   +. .+..|+.|+.++|..+...     ..++++|+.+.+.++.   ...+...-.+++.
T Consensus       268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~  347 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH  347 (483)
T ss_pred             hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence            888888888887665433   22 4678899999999854443     3478999999998876   1222222346899


Q ss_pred             CcEEEeeccc-cchHHHHHHhccCCCcceEeecccccccccc--------cCCCcccEEecccccccee----ecccCCC
Q 016710          265 LKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSIN--------ISSRSLKLLEIYDCLRLVE----VKIAASS  331 (384)
Q Consensus       265 L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~--------~~~~~L~~L~l~~c~~l~~----~~~~~~~  331 (384)
                      |+.+++..+. .++..+..+..+||.|+.|.++.|..++..+        .....|+.|++++|..+++    ....|++
T Consensus       348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~  427 (483)
T KOG4341|consen  348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN  427 (483)
T ss_pred             hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence            9999998877 4455688899999999999999998775442        2346899999999998873    3467999


Q ss_pred             CceeEEecccc
Q 016710          332 LSIFKYSGDVI  342 (384)
Q Consensus       332 L~~L~l~~~~~  342 (384)
                      |+.+++.++..
T Consensus       428 Leri~l~~~q~  438 (483)
T KOG4341|consen  428 LERIELIDCQD  438 (483)
T ss_pred             cceeeeechhh
Confidence            99999999864

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.81  E-value=1.1e-09  Score=104.06  Aligned_cols=241  Identities=21%  Similarity=0.225  Sum_probs=135.7

Q ss_pred             CCCcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec-CC-Ccc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE-SP-RSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~-~~-~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      .++++|+|....  ...+... ..++.+|..|+|+.+++. .| ..+ .+|.|+.|+|..+.+....... +.+.|.|+.
T Consensus       173 ~ni~~L~La~N~--It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt-FqgL~Sl~n  249 (873)
T KOG4194|consen  173 VNIKKLNLASNR--ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT-FQGLPSLQN  249 (873)
T ss_pred             CCceEEeecccc--ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh-hcCchhhhh
Confidence            477788775433  2222222 224568888888887766 22 333 4888888888888762211111 455666666


Q ss_pred             EEeeeCCCCc--e-----------e-------------ecCCCCCCceEEeccccccceeee----cCCceeEEEEeCcc
Q 016710          202 LSLQLCPGLK--N-----------L-------------ELSGLTKLNKFEVCDAEELQRLCI----IAQDVQEVSIQGPL  251 (384)
Q Consensus       202 L~L~~c~~~~--~-----------~-------------~i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~  251 (384)
                      |.|..++..+  .           +             ..-++..|+.|+++.. .+..+++    .+++|+.|+++.+.
T Consensus       250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNR  328 (873)
T ss_pred             hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccc
Confidence            6665543221  0           0             1113456666666654 2334433    46777777776655


Q ss_pred             cccce-eccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc---cccc---cccCCCcccEEecccccccee
Q 016710          252 PFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD---DLKS---INISSRSLKLLEIYDCLRLVE  324 (384)
Q Consensus       252 ~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~---~l~~---~~~~~~~L~~L~l~~c~~l~~  324 (384)
                      ..... -.+..+..|+.|.|+.|.++. .-...+.++.+|++|+++...   -++.   .....++|+.|++.+. .+..
T Consensus       329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~  406 (873)
T KOG4194|consen  329 ITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKS  406 (873)
T ss_pred             cccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeee
Confidence            32221 234446677777777765542 223455677889999887743   1122   2223588999999863 3444


Q ss_pred             ec----ccCCCCceeEEecccc-ccceEEEEee-ccCcceeecc----CCcchhhhhc
Q 016710          325 VK----IAASSLSIFKYSGDVI-SFQLGAITFS-KSHLLFQTEN----SSSEWYTEHF  372 (384)
Q Consensus       325 ~~----~~~~~L~~L~l~~~~~-~~~~~~l~~~-~~~~~~~~~~----~~~~~~~~~~  372 (384)
                      ++    .+.++||.|++.+|.+ +-|..++.-. -+++-+-+..    |.--|-.+..
T Consensus       407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl  464 (873)
T KOG4194|consen  407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWL  464 (873)
T ss_pred             cchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHH
Confidence            44    5799999999999986 5555443211 1133333322    4566665554

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.81  E-value=1.4e-09  Score=70.28  Aligned_cols=36  Identities=33%  Similarity=0.630  Sum_probs=31.3

Q ss_pred             cCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhc
Q 016710           10 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWH   45 (384)
Q Consensus        10 is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~   45 (384)
                      |+.||+||+.+||+||+.+|+++++.|||+|+++..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999998653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.79  E-value=1.4e-09  Score=101.00  Aligned_cols=154  Identities=20%  Similarity=0.094  Sum_probs=79.1

Q ss_pred             cccCCCCccEEEecCeeec--CCCc-cCC---CCCCeEEeeeeecChHHHHH---HHcCC-CCccEEEeeeCCCCce---
Q 016710          146 IILCSNSIEILTLAGLKLE--SPRS-VKL---SSLTKLFLMRVDATDLVLQS---LLIGC-PLIEYLSLQLCPGLKN---  212 (384)
Q Consensus       146 ~l~~~~~L~~L~L~~~~l~--~~~~-~~~---~~L~~L~L~~~~~~~~~l~~---l~~~~-p~Le~L~L~~c~~~~~---  212 (384)
                      .+..+++|++|++++|.+.  .+.. ..+   ++|+.|+++++.+++.....   .+..+ ++|++|.+.+|.....   
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            3444667777777776553  1111 112   44777777777774433332   23344 7777777777753310   


Q ss_pred             -e--ecCCCCCCceEEecccccc----ceee---ecCCceeEEEEeCccccc-----ceeccccCccCcEEEeeccccch
Q 016710          213 -L--ELSGLTKLNKFEVCDAEEL----QRLC---IIAQDVQEVSIQGPLPFQ-----CKFNLASCKFLKYLRFALTHIKD  277 (384)
Q Consensus       213 -~--~i~~~~~L~~L~l~~~~~l----~~~~---~~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~  277 (384)
                       +  .+..+++|+.|++.+|.-.    ..+.   ...++|++|+++++....     ....+..+++|++|+++++.+++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence             0  1223456777777666410    1111   122456666665544211     11123445666666666666665


Q ss_pred             HHHHHHhccC----CCcceEeecccc
Q 016710          278 EWLCNQISKF----PLLESLLIAGCD  299 (384)
Q Consensus       278 ~~~~~l~~~~----p~L~~L~l~~c~  299 (384)
                      ..+..+...+    +.|++|++++|.
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCC
Confidence            4444443332    566666666664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.78  E-value=1.7e-09  Score=100.54  Aligned_cols=219  Identities=21%  Similarity=0.099  Sum_probs=145.2

Q ss_pred             CCCcEEEEEeCCCCC---cccCccccCCCCccEEEecCeeecC-CC--------ccCCCCCCeEEeeeeecCh---HHHH
Q 016710          126 CNVKELSLELLGNPR---FNLPEIILCSNSIEILTLAGLKLES-PR--------SVKLSSLTKLFLMRVDATD---LVLQ  190 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~l~~-~~--------~~~~~~L~~L~L~~~~~~~---~~l~  190 (384)
                      .+++++++..+....   ..++..+...++|++|+++++.+.. +.        ...+++|+.|+++++.+..   ..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            459999997655422   3455556668889999998875541 11        1147799999999998842   3344


Q ss_pred             HHHcCCCCccEEEeeeCCCCc-ee-----ecCCC-CCCceEEecccccc----cee---eecCCceeEEEEeCccccc--
Q 016710          191 SLLIGCPLIEYLSLQLCPGLK-NL-----ELSGL-TKLNKFEVCDAEEL----QRL---CIIAQDVQEVSIQGPLPFQ--  254 (384)
Q Consensus       191 ~l~~~~p~Le~L~L~~c~~~~-~~-----~i~~~-~~L~~L~l~~~~~l----~~~---~~~~p~L~~L~l~~~~~~~--  254 (384)
                      .+... +.|++|++.+|.... ..     .+..+ ++|+.|++.+|.-.    ..+   ...+++|+.|++.++....  
T Consensus       103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            44455 779999999986441 00     12344 79999999999611    111   1245689999998876321  


Q ss_pred             ---ceeccccCccCcEEEeeccccchHH---HHHHhccCCCcceEeeccccccc----cccc----CCCcccEEeccccc
Q 016710          255 ---CKFNLASCKFLKYLRFALTHIKDEW---LCNQISKFPLLESLLIAGCDDLK----SINI----SSRSLKLLEIYDCL  320 (384)
Q Consensus       255 ---~~~~~~~~~~L~~L~L~~~~~~~~~---~~~l~~~~p~L~~L~l~~c~~l~----~~~~----~~~~L~~L~l~~c~  320 (384)
                         ....+..+++|++|++.++.+++..   +...+..+++|+.|++++|.--.    .+..    ..++|++|.+.+|.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence               1112345679999999998877554   34456778999999999976221    1222    23799999999874


Q ss_pred             cc----e---eecccCCCCceeEEeccccccc
Q 016710          321 RL----V---EVKIAASSLSIFKYSGDVISFQ  345 (384)
Q Consensus       321 ~l----~---~~~~~~~~L~~L~l~~~~~~~~  345 (384)
                      --    .   ......++|+.+++++|.++.+
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            21    1   2234468899999999987544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.9e-09  Score=94.65  Aligned_cols=80  Identities=19%  Similarity=0.219  Sum_probs=62.5

Q ss_pred             CccCcEEEeeccc--cchHHHHHHhccCCCcceEeecccccccc----cccCCCcccEEeccccccce--eec--ccCCC
Q 016710          262 CKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKS----INISSRSLKLLEIYDCLRLV--EVK--IAASS  331 (384)
Q Consensus       262 ~~~L~~L~L~~~~--~~~~~~~~l~~~~p~L~~L~l~~c~~l~~----~~~~~~~L~~L~l~~c~~l~--~~~--~~~~~  331 (384)
                      -++|+.|+|+++.  +....+.-+...||+|.+||+++|..++.    ....++.|++|.++.|-++.  .+.  ...|+
T Consensus       285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps  364 (419)
T KOG2120|consen  285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPS  364 (419)
T ss_pred             chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcc
Confidence            3678888887754  44455667788999999999999987754    23356899999999998887  222  56999


Q ss_pred             CceeEEeccc
Q 016710          332 LSIFKYSGDV  341 (384)
Q Consensus       332 L~~L~l~~~~  341 (384)
                      |.+|++.|+-
T Consensus       365 l~yLdv~g~v  374 (419)
T KOG2120|consen  365 LVYLDVFGCV  374 (419)
T ss_pred             eEEEEecccc
Confidence            9999998873

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.46  E-value=3.3e-09  Score=101.70  Aligned_cols=166  Identities=17%  Similarity=0.222  Sum_probs=83.5

Q ss_pred             CCcEEEEEeCCCCCcccCcccc-CCCCccEEEecCeeec--CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          127 NVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       127 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      +.-+|+|+  .+...++|..++ .+..|-.|+|+++.+.  +|....+.+|++|.|+++......+.+ +.+...|+.|.
T Consensus       127 n~iVLNLS--~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLh  203 (1255)
T KOG0444|consen  127 NSIVLNLS--YNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLH  203 (1255)
T ss_pred             CcEEEEcc--cCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhh
Confidence            44444443  334556666554 3555666666666665  333336777777777777655444444 22334455555


Q ss_pred             eeeCCCC-ce--eecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchH
Q 016710          204 LQLCPGL-KN--LELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDE  278 (384)
Q Consensus       204 L~~c~~~-~~--~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  278 (384)
                      +++.... ..  .++.++.+|+.++++...  .++.-.-..++|+.|.++++.........+.-.+|++|+++.++++. 
T Consensus       204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-  282 (1255)
T KOG0444|consen  204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-  282 (1255)
T ss_pred             cccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-
Confidence            5543221 11  123344566666666442  12222234566777777766544333333334556666665555431 


Q ss_pred             HHHHHhccCCCcceEeecc
Q 016710          279 WLCNQISKFPLLESLLIAG  297 (384)
Q Consensus       279 ~~~~l~~~~p~L~~L~l~~  297 (384)
                       +...+-.++.|++|.+.+
T Consensus       283 -LP~avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  283 -LPDAVCKLTKLTKLYANN  300 (1255)
T ss_pred             -chHHHhhhHHHHHHHhcc
Confidence             233333445555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=3.3e-08  Score=91.13  Aligned_cols=150  Identities=19%  Similarity=0.153  Sum_probs=94.3

Q ss_pred             cCCCCccEEEecCeeecCCCc----cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCc--eeecCCCCCC
Q 016710          148 LCSNSIEILTLAGLKLESPRS----VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK--NLELSGLTKL  221 (384)
Q Consensus       148 ~~~~~L~~L~L~~~~l~~~~~----~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~--~~~i~~~~~L  221 (384)
                      ..+|+|++|+|+.+.+..+..    ..++.||+|.|+.|.++...+.+++..||.|+.|.+..+....  .....-+..|
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            346888888888776663322    2688888889988888888888888889999999988875331  1111223488


Q ss_pred             ceEEecccc--ccceee--ecCCceeEEEEeCcccccce-------eccccCccCcEEEeeccccchHHHHHHhccCCCc
Q 016710          222 NKFEVCDAE--ELQRLC--IIAQDVQEVSIQGPLPFQCK-------FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLL  290 (384)
Q Consensus       222 ~~L~l~~~~--~l~~~~--~~~p~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L  290 (384)
                      +.|++++..  ......  ...|+|+.|.+..+......       -....+++|++|.+..|.+.+.....-+...++|
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl  328 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL  328 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence            888888775  222222  25667777776655422211       1123467777777777766544334444556666


Q ss_pred             ceEeecc
Q 016710          291 ESLLIAG  297 (384)
Q Consensus       291 ~~L~l~~  297 (384)
                      ++|.+..
T Consensus       329 k~l~~~~  335 (505)
T KOG3207|consen  329 KHLRITL  335 (505)
T ss_pred             hhhhccc
Confidence            6666543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.41  E-value=2e-09  Score=103.09  Aligned_cols=211  Identities=15%  Similarity=0.047  Sum_probs=143.2

Q ss_pred             CcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecC---CCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          128 VKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES---PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       128 l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      +-.|+|  ..+....+|..+..+.+|+.|.|+++.+..   ....++.+|.+|++++...+...+..-+....+|.++++
T Consensus       152 LLfLDL--S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl  229 (1255)
T KOG0444|consen  152 LLFLDL--SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL  229 (1255)
T ss_pred             Hhhhcc--ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence            334444  345578899999999999999999987662   233356778888888876655555555667788999999


Q ss_pred             eeCCCCce-eecCCCCCCceEEeccccccceeee---cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHH
Q 016710          205 QLCPGLKN-LELSGLTKLNKFEVCDAEELQRLCI---IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWL  280 (384)
Q Consensus       205 ~~c~~~~~-~~i~~~~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  280 (384)
                      +.+.-... ..+-.+++|++|.+++.. +..+..   .-.+|++|.++.+.....+..+.+++.|+.|.+.+++++-+.+
T Consensus       230 S~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  230 SENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             cccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCC
Confidence            86532211 112246899999999874 333332   3358899999888755556567778899999888888776666


Q ss_pred             HHHhccCCCcceEeecccc--cccccccCCCcccEEeccccccce--eecccCCCCceeEEeccc
Q 016710          281 CNQISKFPLLESLLIAGCD--DLKSINISSRSLKLLEIYDCLRLV--EVKIAASSLSIFKYSGDV  341 (384)
Q Consensus       281 ~~l~~~~p~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~L~~L~l~~~~  341 (384)
                      ..=++.+.+|+.+..++..  .+..-.+.|++|+.|.++...-+.  +-..-+|.|+.|++..|+
T Consensus       309 PSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  309 PSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCc
Confidence            6666667777777776643  223333457888888887543222  333557888888887775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.41  E-value=7.4e-08  Score=91.90  Aligned_cols=211  Identities=17%  Similarity=0.141  Sum_probs=100.3

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CC--CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP--RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  202 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  202 (384)
                      ++++++.+..  +....+|.......+|+.|.|.++.+. +.  ....+|.|++|+|+.+.++.-.... +..-+++++|
T Consensus       102 ~nLq~v~l~~--N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s-fp~~~ni~~L  178 (873)
T KOG4194|consen  102 PNLQEVNLNK--NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPS-FPAKVNIKKL  178 (873)
T ss_pred             Ccceeeeecc--chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCC-CCCCCCceEE
Confidence            5666666542  234455555444556666666665554 11  1124566666666665542111111 2223456666


Q ss_pred             EeeeCCCC--ceeecCCCCCCceEEecccc--ccceeee-cCCceeEEEEeCcccccc-eeccc----------------
Q 016710          203 SLQLCPGL--KNLELSGLTKLNKFEVCDAE--ELQRLCI-IAQDVQEVSIQGPLPFQC-KFNLA----------------  260 (384)
Q Consensus       203 ~L~~c~~~--~~~~i~~~~~L~~L~l~~~~--~l~~~~~-~~p~L~~L~l~~~~~~~~-~~~~~----------------  260 (384)
                      +|.++...  +.-...++.+|..|.++...  .++.... ..|+|+.|++..+..... ...+.                
T Consensus       179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~  258 (873)
T KOG4194|consen  179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS  258 (873)
T ss_pred             eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence            66655322  11223344455555555443  2222222 255566666555432111 11222                


Q ss_pred             --------cCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccccc----CCCcccEEeccccccceeec--
Q 016710          261 --------SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINI----SSRSLKLLEIYDCLRLVEVK--  326 (384)
Q Consensus       261 --------~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~----~~~~L~~L~l~~c~~l~~~~--  326 (384)
                              .+.++++|+|..|.+.... .+.+.++..|+.|+++... +..+..    -+++|+.|++++. .+..+.  
T Consensus       259 kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N-~i~~l~~~  335 (873)
T KOG4194|consen  259 KLDDGAFYGLEKMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSN-RITRLDEG  335 (873)
T ss_pred             cccCcceeeecccceeecccchhhhhh-cccccccchhhhhccchhh-hheeecchhhhcccceeEecccc-ccccCChh
Confidence                    3445555555444433211 3344555666666666532 222222    2367777777643 222222  


Q ss_pred             --ccCCCCceeEEecccc
Q 016710          327 --IAASSLSIFKYSGDVI  342 (384)
Q Consensus       327 --~~~~~L~~L~l~~~~~  342 (384)
                        ..+..|++|.+++|.+
T Consensus       336 sf~~L~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  336 SFRVLSQLEELNLSHNSI  353 (873)
T ss_pred             HHHHHHHhhhhcccccch
Confidence              3466778888888766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.37  E-value=2.4e-06  Score=87.08  Aligned_cols=197  Identities=20%  Similarity=0.129  Sum_probs=94.2

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      .+-..|++...  ...++|..+.  ++|+.|.+.++.+. .|.  ..++|++|++++|.++.  +   ....++|+.|++
T Consensus       201 ~~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--L---P~lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGES--GLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--L---PVLPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCC--CCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--c---cCcccccceeec
Confidence            34455555433  3446676553  46777777776655 222  25777888887776521  1   112356666666


Q ss_pred             eeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceec----------------cccC-ccCcE
Q 016710          205 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFN----------------LASC-KFLKY  267 (384)
Q Consensus       205 ~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~----------------~~~~-~~L~~  267 (384)
                      .++... .+.. ..++|+.|.+.++. +..+....|+|+.|+++++.....+..                ++.+ ++|+.
T Consensus       270 s~N~L~-~Lp~-lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~  346 (788)
T PRK15387        270 FSNPLT-HLPA-LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQE  346 (788)
T ss_pred             cCCchh-hhhh-chhhcCEEECcCCc-cccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccce
Confidence            655321 1110 11245555555542 222222334555555554432111100                1111 24556


Q ss_pred             EEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEeccccccceeecccCCCCceeEEeccccc
Q 016710          268 LRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       268 L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~  343 (384)
                      |++++|.++.     +....++|+.|+++++. +..+.....+|+.|+++++ .+..++...++|+.|++++|.++
T Consensus       347 LdLS~N~Ls~-----LP~lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~Ls  415 (788)
T PRK15387        347 LSVSDNQLAS-----LPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLT  415 (788)
T ss_pred             EecCCCccCC-----CCCCCcccceehhhccc-cccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCcCC
Confidence            6665555432     11122355555555432 2222222346677777653 33344444456777777776653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.36  E-value=1.2e-06  Score=89.36  Aligned_cols=201  Identities=21%  Similarity=0.183  Sum_probs=91.1

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecCh-H--------------HH
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATD-L--------------VL  189 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~-~--------------~l  189 (384)
                      .+++.|.+..  +....+|..   .++|++|+++++.+. .|.  ..++|+.|++.++.+.. .              .+
T Consensus       222 ~~L~~L~L~~--N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~L  294 (788)
T PRK15387        222 AHITTLVIPD--NNLTSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL  294 (788)
T ss_pred             cCCCEEEccC--CcCCCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccCCchhhhhhchhhcCEEECcCCcc
Confidence            4677777653  334455542   477888888887665 221  24566677666664411 0              00


Q ss_pred             HHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEE
Q 016710          190 QSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLR  269 (384)
Q Consensus       190 ~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  269 (384)
                      ..+....|.|+.|+++++... .+.. ..++|+.|.+.++. +..+....++|+.|+++++.....+.   ..++|+.|+
T Consensus       295 t~LP~~p~~L~~LdLS~N~L~-~Lp~-lp~~L~~L~Ls~N~-L~~LP~lp~~Lq~LdLS~N~Ls~LP~---lp~~L~~L~  368 (788)
T PRK15387        295 TSLPVLPPGLQELSVSDNQLA-SLPA-LPSELCKLWAYNNQ-LTSLPTLPSGLQELSVSDNQLASLPT---LPSELYKLW  368 (788)
T ss_pred             ccccccccccceeECCCCccc-cCCC-CcccccccccccCc-cccccccccccceEecCCCccCCCCC---CCcccceeh
Confidence            011112245666666555222 1110 11245555555442 11222122366777776654322211   123444444


Q ss_pred             eeccccchHHHHH-----------------HhccCCCcceEeecccccccccccCCCcccEEeccccccceeec---ccC
Q 016710          270 FALTHIKDEWLCN-----------------QISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVK---IAA  329 (384)
Q Consensus       270 L~~~~~~~~~~~~-----------------l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~~~---~~~  329 (384)
                      +.++.++.  +..                 +....++|+.|+++++. +..+.....+|+.|++.+. .+..++   ..+
T Consensus       369 Ls~N~L~~--LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~sl~~L  444 (788)
T PRK15387        369 AYNNRLTS--LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESLIHL  444 (788)
T ss_pred             hhcccccc--CcccccccceEEecCCcccCCCCcccCCCEEEccCCc-CCCCCcchhhhhhhhhccC-cccccChHHhhc
Confidence            44443321  111                 11112344555554443 2222222234555555432 223333   347


Q ss_pred             CCCceeEEeccccc
Q 016710          330 SSLSIFKYSGDVIS  343 (384)
Q Consensus       330 ~~L~~L~l~~~~~~  343 (384)
                      ++|+.|++++|+++
T Consensus       445 ~~L~~LdLs~N~Ls  458 (788)
T PRK15387        445 SSETTVNLEGNPLS  458 (788)
T ss_pred             cCCCeEECCCCCCC
Confidence            77888888888764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.31  E-value=8.9e-08  Score=62.14  Aligned_cols=37  Identities=30%  Similarity=0.631  Sum_probs=31.3

Q ss_pred             cCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhcc
Q 016710           10 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT   46 (384)
Q Consensus        10 is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~~   46 (384)
                      |++||+|++.+||++|+.+|+++++.|||+|+++..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999987654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.24  E-value=3.3e-06  Score=86.39  Aligned_cols=199  Identities=16%  Similarity=0.169  Sum_probs=86.4

Q ss_pred             CCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEee
Q 016710          127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ  205 (384)
Q Consensus       127 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~  205 (384)
                      +..+|+++.  .....+|..+  .++|+.|+|+++.+. .+.. .+++|++|++++|.+..  +...  -.+.|+.|.|+
T Consensus       179 ~~~~L~L~~--~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKI--LGLTTIPACI--PEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTS--IPAT--LPDTIQEMELS  249 (754)
T ss_pred             CceEEEeCC--CCcCcCCccc--ccCCcEEEecCCCCCcCChh-hccCCCEEECCCCcccc--CChh--hhccccEEECc
Confidence            445555533  2344555543  246777777776554 2221 23567777777665521  1100  12356666666


Q ss_pred             eCCCCceeecCCCCCCceEEeccccccceeee-cCCceeEEEEeCcccccceecc-------------------ccCccC
Q 016710          206 LCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQCKFNL-------------------ASCKFL  265 (384)
Q Consensus       206 ~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~-------------------~~~~~L  265 (384)
                      +|... .+...-.++|+.|+++.+. +..+.. ..++|+.|+++++.....+..+                   ...++|
T Consensus       250 ~N~L~-~LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL  327 (754)
T PRK15370        250 INRIT-ELPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGL  327 (754)
T ss_pred             CCccC-cCChhHhCCCCEEECcCCc-cCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccc
Confidence            65322 1111111255566555432 222221 1235555555554321111100                   012455


Q ss_pred             cEEEeeccccchHHHHHHhccCCCcceEeecccccccccccC-CCcccEEeccccccceeeccc-CCCCceeEEecccc
Q 016710          266 KYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINIS-SRSLKLLEIYDCLRLVEVKIA-ASSLSIFKYSGDVI  342 (384)
Q Consensus       266 ~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~-~~~L~~L~l~~c~~l~~~~~~-~~~L~~L~l~~~~~  342 (384)
                      +.|++.+|.++.  +...+  +++|+.|+++++. +..+... .++|++|+|+++ .+..++.. .+.|+.|++++|.+
T Consensus       328 ~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N-~Lt~LP~~l~~sL~~LdLs~N~L  400 (754)
T PRK15370        328 KTLEAGENALTS--LPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRN-ALTNLPENLPAALQIMQASRNNL  400 (754)
T ss_pred             eeccccCCcccc--CChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCC-cCCCCCHhHHHHHHHHhhccCCc
Confidence            555555554332  11111  2456666666553 2222211 245666666654 23333322 12466666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.23  E-value=1.7e-06  Score=88.54  Aligned_cols=200  Identities=17%  Similarity=0.124  Sum_probs=108.3

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      ..++.|++...  ....+|..+.  ++|+.|++++|.+. .|.. ..++|+.|+|++|.+..  +...+  ...|+.|++
T Consensus       199 ~~L~~L~Ls~N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNN--ELKSLPENLQ--GNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITE--LPERL--PSALQSLDL  269 (754)
T ss_pred             cCCcEEEecCC--CCCcCChhhc--cCCCEEECCCCccccCChh-hhccccEEECcCCccCc--CChhH--hCCCCEEEC
Confidence            35666666432  3445665443  46777777776554 2211 13456666666665521  00001  124555555


Q ss_pred             eeCCCCceeecCCCCCCceEEecccc--------------------ccceee-ecCCceeEEEEeCcccccceeccccCc
Q 016710          205 QLCPGLKNLELSGLTKLNKFEVCDAE--------------------ELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCK  263 (384)
Q Consensus       205 ~~c~~~~~~~i~~~~~L~~L~l~~~~--------------------~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~  263 (384)
                      +++. +..+.-.-.++|+.|+++++.                    .+..+. ...++|+.|.++++.....+..+  .+
T Consensus       270 s~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~  346 (754)
T PRK15370        270 FHNK-ISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PP  346 (754)
T ss_pred             cCCc-cCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cC
Confidence            5432 211111111245555555442                    111111 12356777777766533222222  37


Q ss_pred             cCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCC-CcccEEeccccccceeec-------ccCCCCcee
Q 016710          264 FLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISS-RSLKLLEIYDCLRLVEVK-------IAASSLSIF  335 (384)
Q Consensus       264 ~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~-~~L~~L~l~~c~~l~~~~-------~~~~~L~~L  335 (384)
                      +|+.|++++|.++.  +...+  .++|+.|++++|. +..+.... ..|+.|++.++. +..++       ..+|.+..|
T Consensus       347 sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L  420 (754)
T PRK15370        347 ELQVLDVSKNQITV--LPETL--PPTITTLDVSRNA-LTNLPENLPAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRI  420 (754)
T ss_pred             cccEEECCCCCCCc--CChhh--cCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCC-cccCchhHHHHhhcCCCccEE
Confidence            99999999988652  12212  3689999999986 43333222 478999988653 33332       346889999


Q ss_pred             EEeccccc
Q 016710          336 KYSGDVIS  343 (384)
Q Consensus       336 ~l~~~~~~  343 (384)
                      .+.+|+++
T Consensus       421 ~L~~Npls  428 (754)
T PRK15370        421 IVEYNPFS  428 (754)
T ss_pred             EeeCCCcc
Confidence            99999875

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.23  E-value=4.3e-07  Score=56.62  Aligned_cols=34  Identities=38%  Similarity=0.648  Sum_probs=31.5

Q ss_pred             CCHHHHHHHhcCCCccceeehhhhhhhhhhhhcc
Q 016710           13 LPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT   46 (384)
Q Consensus        13 LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~~   46 (384)
                      ||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.18  E-value=7.8e-07  Score=80.06  Aligned_cols=174  Identities=21%  Similarity=0.166  Sum_probs=111.4

Q ss_pred             CCCCCCeEEeeeeec---ChHHHHHHHcCCCCccEEEeeeCCCCc---------------eeecCCCCCCceEEecccc-
Q 016710          170 KLSSLTKLFLMRVDA---TDLVLQSLLIGCPLIEYLSLQLCPGLK---------------NLELSGLTKLNKFEVCDAE-  230 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~L~~c~~~~---------------~~~i~~~~~L~~L~l~~~~-  230 (384)
                      .+|.|++|+|+++.+   ....+..++++|..|+.|.|.+|..-.               .-.+.+-|.|+.+...... 
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            455666666666666   345677778888888888888885321               1123344688888777664 


Q ss_pred             -ccc-----eeeecCCceeEEEEeCcccccce-----eccccCccCcEEEeeccccchH---HHHHHhccCCCcceEeec
Q 016710          231 -ELQ-----RLCIIAQDVQEVSIQGPLPFQCK-----FNLASCKFLKYLRFALTHIKDE---WLCNQISKFPLLESLLIA  296 (384)
Q Consensus       231 -~l~-----~~~~~~p~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~L~~~~~~~~---~~~~l~~~~p~L~~L~l~  296 (384)
                       +..     ...-..|+|+.+++..+.+.+-.     ..+..|++|+.|+|..|.++..   .+...+..+|+|+.|.++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence             111     11124578888888766532211     1356689999999988887754   344556777889999999


Q ss_pred             ccccc--------cccccCCCcccEEeccccccc-------eeecccCCCCceeEEeccccc
Q 016710          297 GCDDL--------KSINISSRSLKLLEIYDCLRL-------VEVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       297 ~c~~l--------~~~~~~~~~L~~L~l~~c~~l-------~~~~~~~~~L~~L~l~~~~~~  343 (384)
                      +|-.-        ..+....|+|+.|.+.++.--       .......|.|..|.+++|...
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            88622        223445689999998754311       111134888999999998764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.18  E-value=2.2e-07  Score=91.31  Aligned_cols=211  Identities=24%  Similarity=0.235  Sum_probs=126.6

Q ss_pred             hCCCcEEEEEeCCC-CCcccCccccCCCCccEEEecCe-eec-------CCCccCCCCCCeEEeeeee-cChHHHHHHHc
Q 016710          125 GCNVKELSLELLGN-PRFNLPEIILCSNSIEILTLAGL-KLE-------SPRSVKLSSLTKLFLMRVD-ATDLVLQSLLI  194 (384)
Q Consensus       125 ~~~l~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~-~l~-------~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~  194 (384)
                      .+.++.+.+..+.. ....+-.....|++|+.|.++++ ...       ......+++|+.|++.++. +++..+..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            37788887765432 22224445567999999999873 211       1122257999999999998 58889999888


Q ss_pred             CCCCccEEEeeeCCCCceee----cCCCCCCceEEecccccc-----ceeeecCCceeEEEEeCccc-------------
Q 016710          195 GCPLIEYLSLQLCPGLKNLE----LSGLTKLNKFEVCDAEEL-----QRLCIIAQDVQEVSIQGPLP-------------  252 (384)
Q Consensus       195 ~~p~Le~L~L~~c~~~~~~~----i~~~~~L~~L~l~~~~~l-----~~~~~~~p~L~~L~l~~~~~-------------  252 (384)
                      .||+|+.|.+.+|..++...    ...+++|++|++.+|..+     ..+...+|+++.|.+.+...             
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence            89999999988888653222    135788999999999743     23334577777766544321             


Q ss_pred             -----ccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEecccccccee--e
Q 016710          253 -----FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVE--V  325 (384)
Q Consensus       253 -----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~--~  325 (384)
                           .........|++++.+.+..+...+......+.+||+|. ..+..+      ...+.+++.|.+..|.....  +
T Consensus       347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~------~~~~~~l~~L~l~~~~~~t~~~l  419 (482)
T KOG1947|consen  347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR------LCRSDSLRVLNLSDCRLVTDKGL  419 (482)
T ss_pred             ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH------hccCCccceEecccCccccccch
Confidence                 001112334556666665555433333344455555552 222111      11112267777777765541  1


Q ss_pred             c---ccCCCCceeEEecccc
Q 016710          326 K---IAASSLSIFKYSGDVI  342 (384)
Q Consensus       326 ~---~~~~~L~~L~l~~~~~  342 (384)
                      .   ..+.+++.+.+.++..
T Consensus       420 ~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  420 RCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             HHHhhhhhccccCCccCccc
Confidence            1   1267777777777654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.00  E-value=2.3e-06  Score=77.11  Aligned_cols=104  Identities=16%  Similarity=0.132  Sum_probs=51.0

Q ss_pred             CCcEEEEEeCCCCC---cccCccccCCCCccEEEecCeeecCCC----------------ccCCCCCCeEEeeeeec---
Q 016710          127 NVKELSLELLGNPR---FNLPEIILCSNSIEILTLAGLKLESPR----------------SVKLSSLTKLFLMRVDA---  184 (384)
Q Consensus       127 ~l~~L~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~l~~~~----------------~~~~~~L~~L~L~~~~~---  184 (384)
                      .++.++|+....++   ..+-..+.+|.+|++|.|.+|-+.+..                ..+-+.|+++...+++.   
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            56666664422222   122233445666666666665443110                11345666666666666   


Q ss_pred             ChHHHHHHHcCCCCccEEEeeeCCCCc-ee-----ecCCCCCCceEEecccc
Q 016710          185 TDLVLQSLLIGCPLIEYLSLQLCPGLK-NL-----ELSGLTKLNKFEVCDAE  230 (384)
Q Consensus       185 ~~~~l~~l~~~~p~Le~L~L~~c~~~~-~~-----~i~~~~~L~~L~l~~~~  230 (384)
                      +...+...+..+|.|+++++.++.... ..     ....||+|+.|++.+..
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt  224 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT  224 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence            223444555566666666666653321 11     12245566666666553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.98  E-value=5.2e-07  Score=90.49  Aligned_cols=121  Identities=18%  Similarity=0.262  Sum_probs=75.2

Q ss_pred             CCCCCCceEEecccc--ccceee-ecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcce
Q 016710          216 SGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLES  292 (384)
Q Consensus       216 ~~~~~L~~L~l~~~~--~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~  292 (384)
                      .+.++||.|.+++..  .++.-. ...+.|+.|.++|+.....+..+..++.|+.|...+|.+.-  +. -+.++|.|+.
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKV  456 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee--ch-hhhhcCcceE
Confidence            356799999999873  222222 24567888889998755445556678888888887776432  12 3456788888


Q ss_pred             Eeeccccccccccc----CCCcccEEeccccccce---eecccCCCCceeEEecc
Q 016710          293 LLIAGCDDLKSINI----SSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGD  340 (384)
Q Consensus       293 L~l~~c~~l~~~~~----~~~~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~~  340 (384)
                      +|++ |.++.....    +.|+||+|++++...+.   +....+.++..+++.-+
T Consensus       457 lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  457 LDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             Eecc-cchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            8887 444443322    23788888888655332   23344555555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.96  E-value=5.3e-06  Score=69.42  Aligned_cols=125  Identities=19%  Similarity=0.082  Sum_probs=38.8

Q ss_pred             CCCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710          150 SNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  226 (384)
Q Consensus       150 ~~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l  226 (384)
                      +.++++|+|.++.+. ..... .+.+|+.|+|++|.+ .-+.    +..++.|+.|.++++.-..               
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~---------------   78 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISS---------------   78 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S---------------
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCc---------------
Confidence            445677777776665 22222 466677777777665 2222    2335556666665542211               


Q ss_pred             ccccccce-eeecCCceeEEEEeCccccc--ceeccccCccCcEEEeeccccchH--HHHHHhccCCCcceEeeccc
Q 016710          227 CDAEELQR-LCIIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFALTHIKDE--WLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       227 ~~~~~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~p~L~~L~l~~c  298 (384)
                           +.. +...+|+|+.|.++++....  ....+..+|+|+.|++.+|++...  .-..++..+|+|+.||-...
T Consensus        79 -----i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   79 -----ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             ------CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             -----cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence                 100 11134556666665544221  112355678888888887775532  23456677888888876553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.89  E-value=1.6e-06  Score=85.31  Aligned_cols=163  Identities=21%  Similarity=0.209  Sum_probs=102.0

Q ss_pred             CCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeC-CCCce------eecCCCCCCceEEecccccccee-----e
Q 016710          170 KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLC-PGLKN------LELSGLTKLNKFEVCDAEELQRL-----C  236 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c-~~~~~------~~i~~~~~L~~L~l~~~~~l~~~-----~  236 (384)
                      .+++|+.|.+..+.. ++..+..+...||+|++|.+.+| .....      .....+++|+.|++..|..+...     .
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            478888888888866 66667788888888888888873 22211      11234678888888888633333     2


Q ss_pred             ecCCceeEEEEeCccc-c--cceeccccCccCcEEEeeccc-cchHHHHHHhccCCCcceEeecccc---cccc------
Q 016710          237 IIAQDVQEVSIQGPLP-F--QCKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCD---DLKS------  303 (384)
Q Consensus       237 ~~~p~L~~L~l~~~~~-~--~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~---~l~~------  303 (384)
                      ..||+|+.|.+.++.. .  ........|++|++|++.++. +++..+..+...||+|+.|.+..+.   .++.      
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~  345 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL  345 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence            3478888888665552 1  122234568888888888776 4466677777778887777655543   2321      


Q ss_pred             -----------cccCCCcccEEeccccccc----eeecccCCCC
Q 016710          304 -----------INISSRSLKLLEIYDCLRL----VEVKIAASSL  332 (384)
Q Consensus       304 -----------~~~~~~~L~~L~l~~c~~l----~~~~~~~~~L  332 (384)
                                 ....+++|+.+.|..|...    ..+..+||+|
T Consensus       346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence                       1223467777777655411    1233567777

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.81  E-value=7e-06  Score=68.69  Aligned_cols=78  Identities=18%  Similarity=0.132  Sum_probs=24.4

Q ss_pred             cCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc-----cccccccCCCcccEEecccccc-----ce-eecccC
Q 016710          261 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD-----DLKSINISSRSLKLLEIYDCLR-----LV-EVKIAA  329 (384)
Q Consensus       261 ~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~-----~l~~~~~~~~~L~~L~l~~c~~-----l~-~~~~~~  329 (384)
                      .++.|+.|++.+|.++.-. ..+...+|+|+.|.+++..     .+..+ ..+|+|++|++.+..-     .. .+...+
T Consensus        62 ~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l  139 (175)
T PF14580_consen   62 GLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKL  139 (175)
T ss_dssp             --TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred             ChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence            3455555555555543211 1122335556666555432     11111 1345666666653221     11 233457


Q ss_pred             CCCceeEEecc
Q 016710          330 SSLSIFKYSGD  340 (384)
Q Consensus       330 ~~L~~L~l~~~  340 (384)
                      |+|+.|+-...
T Consensus       140 P~Lk~LD~~~V  150 (175)
T PF14580_consen  140 PSLKVLDGQDV  150 (175)
T ss_dssp             TT-SEETTEET
T ss_pred             ChhheeCCEEc
Confidence            77777765443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=1.3e-05  Score=70.88  Aligned_cols=178  Identities=17%  Similarity=0.076  Sum_probs=125.8

Q ss_pred             CCCcEEEEEeCCCCCc-ccCccccCCCCccEEEecCeeecCCCc---cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRF-NLPEIILCSNSIEILTLAGLKLESPRS---VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~l~~~~~---~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      .++++++|.-....+. ++...+..+|.|+.|+|+.+.+..+..   ....+|++|.|.+...+.+....++...|.+.+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            5788888853222222 233444568999999999988774322   367899999999999888899999999999999


Q ss_pred             EEeeeCCC----CceeecC-CCCCCceEEecccc-----ccceeeecCCceeEEEEeCcccccc--eeccccCccCcEEE
Q 016710          202 LSLQLCPG----LKNLELS-GLTKLNKFEVCDAE-----ELQRLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLR  269 (384)
Q Consensus       202 L~L~~c~~----~~~~~i~-~~~~L~~L~l~~~~-----~l~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~  269 (384)
                      |.++.+..    ...-.+. -.|.++.|...+|.     +...+.--.|++.++.+..+.....  .-....+|.+-.|.
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            98887621    1111122 12578888888887     2333334578899888876652221  12244578888899


Q ss_pred             eeccccchHHHHHHhccCCCcceEeecccccccc
Q 016710          270 FALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS  303 (384)
Q Consensus       270 L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~  303 (384)
                      |+.+.+...+-...+.+||.|.-|.+...+-.+.
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            9888888777777889999999999998775544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.75  E-value=1.2e-05  Score=81.65  Aligned_cols=101  Identities=13%  Similarity=0.135  Sum_probs=47.0

Q ss_pred             CCccEEEeeeCCCCc-ee--ec-CCCCCCceEEecccc----ccceeeecCCceeEEEEeCcccccceeccccCccCcEE
Q 016710          197 PLIEYLSLQLCPGLK-NL--EL-SGLTKLNKFEVCDAE----ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYL  268 (384)
Q Consensus       197 p~Le~L~L~~c~~~~-~~--~i-~~~~~L~~L~l~~~~----~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L  268 (384)
                      .+|+.|++++-.... .+  .+ ..+|+|++|.+.+-.    .+..+....|||.+|+++++..... ..++.+++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            356666665532221 11  11 135666666666533    2223333556666666666542221 123445555555


Q ss_pred             EeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          269 RFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       269 ~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      .+.+-.+....-..-+.++.+|+.||||.-
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            555544443221222234566666666553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.74  E-value=1.1e-05  Score=81.84  Aligned_cols=147  Identities=16%  Similarity=0.123  Sum_probs=93.8

Q ss_pred             CCccEEEecCeeec---CC--CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEE
Q 016710          151 NSIEILTLAGLKLE---SP--RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE  225 (384)
Q Consensus       151 ~~L~~L~L~~~~l~---~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~  225 (384)
                      .+|++|+++|....   ++  .+.-||+|++|.+.+..+....+..+..++|+|..|+++++......-++.+.+|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            67888888884332   22  22358999999999998855557888889999999999987433223345566777777


Q ss_pred             ecccccccee----eecCCceeEEEEeCcccccce-e------ccccCccCcEEEeeccccchHHHHHHhccCCCcceEe
Q 016710          226 VCDAEELQRL----CIIAQDVQEVSIQGPLPFQCK-F------NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL  294 (384)
Q Consensus       226 l~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~-~------~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~  294 (384)
                      +.+-+-....    .....+|+.|+++........ +      .-..+|+|+.|+.++.+++.+.+..++..=|+|+...
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            6654311100    124567777777765421111 0      1223678888888877777776666666666666665


Q ss_pred             ecc
Q 016710          295 IAG  297 (384)
Q Consensus       295 l~~  297 (384)
                      +-+
T Consensus       282 ~~~  284 (699)
T KOG3665|consen  282 ALD  284 (699)
T ss_pred             hhh
Confidence            544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.58  E-value=1.5e-06  Score=70.64  Aligned_cols=56  Identities=14%  Similarity=0.077  Sum_probs=25.8

Q ss_pred             ceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          241 DVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       241 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      .|+.|.++++.....+..++.+.+|+.|.+..+++.  .+..-++.+..|++|+|.+.
T Consensus       128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccc
Confidence            344444444443334444555555555555554421  11222333455555555553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.31  E-value=9.1e-05  Score=65.77  Aligned_cols=189  Identities=13%  Similarity=0.104  Sum_probs=107.5

Q ss_pred             cCCCCccEEEecCeeec----------CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCc--ee-
Q 016710          148 LCSNSIEILTLAGLKLE----------SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK--NL-  213 (384)
Q Consensus       148 ~~~~~L~~L~L~~~~l~----------~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~--~~-  213 (384)
                      .-|..|+.|..++..-+          .+. ...|.+|+++.++.|.  ...+..+...=|.|..+.+.+.....  .+ 
T Consensus       179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~  256 (490)
T KOG1259|consen  179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTIQDVPSLL  256 (490)
T ss_pred             HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeeccccccccccc
Confidence            34788899988764221          111 1247888888888875  34444445556788888776542210  00 


Q ss_pred             ----------------------ecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEE
Q 016710          214 ----------------------ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLR  269 (384)
Q Consensus       214 ----------------------~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  269 (384)
                                            .+.....|..|++++..  .+..-..-+|.++.|.++.+....+ -++..+++|+.|+
T Consensus       257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LD  335 (490)
T KOG1259|consen  257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLD  335 (490)
T ss_pred             chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee-hhhhhcccceEee
Confidence                                  01112345556665543  2222223467777777766542221 1355677777777


Q ss_pred             eeccccchHHHHHHhccCCCcceEeeccccccccccc--CCCcccEEeccccc--cceeec--ccCCCCceeEEecccc
Q 016710          270 FALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINI--SSRSLKLLEIYDCL--RLVEVK--IAASSLSIFKYSGDVI  342 (384)
Q Consensus       270 L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~--~~~~L~~L~l~~c~--~l~~~~--~~~~~L~~L~l~~~~~  342 (384)
                      |++|.++  .+..+-..+-|++.|.+++.. ++.+..  ..-+|.+|++.+..  .+.++.  .++|.|+.+.+.+|++
T Consensus       336 LS~N~Ls--~~~Gwh~KLGNIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  336 LSGNLLA--ECVGWHLKLGNIKTLKLAQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             cccchhH--hhhhhHhhhcCEeeeehhhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            7777653  234444556677777777643 222221  22467777776432  333333  6799999999999976

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.24  E-value=7.8e-05  Score=75.39  Aligned_cols=194  Identities=16%  Similarity=0.076  Sum_probs=91.3

Q ss_pred             CcccCccccCCCCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce-eecC
Q 016710          140 RFNLPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN-LELS  216 (384)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~-~~i~  216 (384)
                      ...+|..+....+|+.|+++.+.+. +|... .+.+|+.|+|.++..  ..+..-++...+|+.|+++++..... +.+.
T Consensus        57 ~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~  134 (1081)
T KOG0618|consen   57 ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLDLSFNHFGPIPLVIE  134 (1081)
T ss_pred             cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh--hcCchhHHhhhcccccccchhccCCCchhHH
Confidence            4455555555566666666655443 22222 456666666665543  11111233344555566555433211 1111


Q ss_pred             CCC-------------------CCceEEeccccccceeeecCCceeE-EEEeCcccccceeccccCccCcEEEeeccccc
Q 016710          217 GLT-------------------KLNKFEVCDAEELQRLCIIAQDVQE-VSIQGPLPFQCKFNLASCKFLKYLRFALTHIK  276 (384)
Q Consensus       217 ~~~-------------------~L~~L~l~~~~~l~~~~~~~p~L~~-L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  276 (384)
                      .+.                   +.+.+++........+.+..-+++. +++..+...  .+.+..+++|+.++...+.+.
T Consensus       135 ~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls  212 (1081)
T KOG0618|consen  135 VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLS  212 (1081)
T ss_pred             hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhhccchhhhhhhhcccc
Confidence            111                   2333333332222223333333333 444333321  233444555555555444322


Q ss_pred             hHHHHHHhccCCCcceEeecccccccccccCC-CcccEEeccc--cccceeecccCCCCceeEEecccc
Q 016710          277 DEWLCNQISKFPLLESLLIAGCDDLKSINISS-RSLKLLEIYD--CLRLVEVKIAASSLSIFKYSGDVI  342 (384)
Q Consensus       277 ~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~-~~L~~L~l~~--c~~l~~~~~~~~~L~~L~l~~~~~  342 (384)
                      .     +--.-|+|+.|+.++++..+...... .+|++++++.  ..++.+....|++|+.++...|.+
T Consensus       213 ~-----l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  213 E-----LEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             e-----EEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence            1     12234667777777766443222222 3778888773  334445556788888888777765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.00034  Score=62.21  Aligned_cols=149  Identities=13%  Similarity=0.065  Sum_probs=94.5

Q ss_pred             CCccEEEecCeeecCCCc-----cCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCceee-c-CCCCCCc
Q 016710          151 NSIEILTLAGLKLESPRS-----VKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLE-L-SGLTKLN  222 (384)
Q Consensus       151 ~~L~~L~L~~~~l~~~~~-----~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~-i-~~~~~L~  222 (384)
                      .-+.-|.+.+|.+...+.     ..+..++.|+|.++.+ +.+.+..++.+.|.|+.|+|+.+.-...+. . ....+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            345566666776652222     1578899999999999 777899999999999999998764332111 1 1234899


Q ss_pred             eEEecccc----ccceeeecCCceeEEEEeCcccccceec---cc-cCccCcEEEeeccccc-hHHHHHHhccCCCcceE
Q 016710          223 KFEVCDAE----ELQRLCIIAQDVQEVSIQGPLPFQCKFN---LA-SCKFLKYLRFALTHIK-DEWLCNQISKFPLLESL  293 (384)
Q Consensus       223 ~L~l~~~~----~l~~~~~~~p~L~~L~l~~~~~~~~~~~---~~-~~~~L~~L~L~~~~~~-~~~~~~l~~~~p~L~~L  293 (384)
                      .|.+.+..    ....+.-..|.++.|+++.+....+.+.   .. --+.+++|+...|... +.....+...|||+..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            99998875    2333444667777777776531111110   00 1245666666666532 33445566778999988


Q ss_pred             eecccc
Q 016710          294 LIAGCD  299 (384)
Q Consensus       294 ~l~~c~  299 (384)
                      -+..|+
T Consensus       205 ~v~e~P  210 (418)
T KOG2982|consen  205 FVCEGP  210 (418)
T ss_pred             eeecCc
Confidence            888775

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.11  E-value=0.0006  Score=59.91  Aligned_cols=105  Identities=17%  Similarity=0.001  Sum_probs=55.9

Q ss_pred             cCCceeEEEEeCccc--ccce---eccccCccCcEEEeeccccchHHHHHH----hccCCCcceEeeccccc-------c
Q 016710          238 IAQDVQEVSIQGPLP--FQCK---FNLASCKFLKYLRFALTHIKDEWLCNQ----ISKFPLLESLLIAGCDD-------L  301 (384)
Q Consensus       238 ~~p~L~~L~l~~~~~--~~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~l----~~~~p~L~~L~l~~c~~-------l  301 (384)
                      +.|.|+.+....+..  .+..   ..+.+-.+|+.+.+..|.+....+.-+    +..+.+|+.|++.+..-       +
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            456677776665441  1110   112233677777777777665532221    24567777777766431       1


Q ss_pred             cccccCCCcccEEecccccc----ceeec-----ccCCCCceeEEecccc
Q 016710          302 KSINISSRSLKLLEIYDCLR----LVEVK-----IAASSLSIFKYSGDVI  342 (384)
Q Consensus       302 ~~~~~~~~~L~~L~l~~c~~----l~~~~-----~~~~~L~~L~l~~~~~  342 (384)
                      .......+.|+.|.+.+|.-    ..++.     ...|+|+.|....+.+
T Consensus       235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            11222346677777777752    11222     2367777777766654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.08  E-value=0.00016  Score=75.58  Aligned_cols=195  Identities=21%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      +.++.|+|+. .....++|..+..+-+|++|++++..+. .|... .+..|.+|++..+..-. .+..+....++|+.|.
T Consensus       571 ~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  571 PLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLR  648 (889)
T ss_pred             cceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccEEE
Confidence            4555555543 2234566666666666666666665544 33222 45666666666554300 1122233356666666


Q ss_pred             eeeCC-CCcee---ecCCCCCCceEEeccccc--cceeeecCCceeE----EEEeCcccccceeccccCccCcEEEeecc
Q 016710          204 LQLCP-GLKNL---ELSGLTKLNKFEVCDAEE--LQRLCIIAQDVQE----VSIQGPLPFQCKFNLASCKFLKYLRFALT  273 (384)
Q Consensus       204 L~~c~-~~~~~---~i~~~~~L~~L~l~~~~~--l~~~~~~~p~L~~----L~l~~~~~~~~~~~~~~~~~L~~L~L~~~  273 (384)
                      +.... .....   .+..+.+|+.|++..+..  +..+ ...+.|.+    +.+.++........+..+.+|+.|.+.++
T Consensus       649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~  727 (889)
T KOG4658|consen  649 LPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDC  727 (889)
T ss_pred             eeccccccchhhHHhhhcccchhhheeecchhHhHhhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcC
Confidence            65432 11111   112233444444433321  0111 12222221    11111111112234556777788877766


Q ss_pred             ccchHHHH----HHhc-cCCCcceEeecccccccccc--cCCCcccEEeccccccce
Q 016710          274 HIKDEWLC----NQIS-KFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYDCLRLV  323 (384)
Q Consensus       274 ~~~~~~~~----~l~~-~~p~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~c~~l~  323 (384)
                      ...+..+.    .... +|+++.++.+..|.......  .-.|+|++|.+..|..++
T Consensus       728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e  784 (889)
T KOG4658|consen  728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE  784 (889)
T ss_pred             CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence            65422110    0001 24555555555555443322  233666666666665444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.04  E-value=0.00011  Score=65.26  Aligned_cols=126  Identities=18%  Similarity=0.126  Sum_probs=87.7

Q ss_pred             CCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEe
Q 016710          171 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQ  248 (384)
Q Consensus       171 ~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~  248 (384)
                      ...|++|+|+++.++  .+..-..-.|.++.|+++++.....-....+++|..|++++..  .+.......-|++.|.+.
T Consensus       283 Wq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             Hhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            457888889888762  1122233478899999998765433345567899999999875  333334456688888888


Q ss_pred             CcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710          249 GPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       249 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~  299 (384)
                      ++..... ..++++-+|.+|++.+|.+..-.-.+-++++|.|+++.+.+.+
T Consensus       361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            7653221 1355678899999999887665556677899999999998866

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.95  E-value=0.0038  Score=59.04  Aligned_cols=133  Identities=20%  Similarity=0.292  Sum_probs=63.0

Q ss_pred             CCCCCeEEeeeeecChHHHHHHHcCCC-CccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeC
Q 016710          171 LSSLTKLFLMRVDATDLVLQSLLIGCP-LIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG  249 (384)
Q Consensus       171 ~~~L~~L~L~~~~~~~~~l~~l~~~~p-~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~  249 (384)
                      +++++.|++++|.+..  +    ...| .|++|.+.+|..+..+.-.-.++|+.|.+.+|..+..+   .++|+.|.+.+
T Consensus        51 ~~~l~~L~Is~c~L~s--L----P~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~~  121 (426)
T PRK15386         51 ARASGRLYIKDCDIES--L----PVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEIKG  121 (426)
T ss_pred             hcCCCEEEeCCCCCcc--c----CCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEEeCC
Confidence            5667777777664311  1    1222 46777777666553322111236777777766544322   34566666644


Q ss_pred             cccccceeccccC-ccCcEEEeeccccchHHHHHHhccC-CCcceEeecccccccccccCCCcccEEeccc
Q 016710          250 PLPFQCKFNLASC-KFLKYLRFALTHIKDEWLCNQISKF-PLLESLLIAGCDDLKSINISSRSLKLLEIYD  318 (384)
Q Consensus       250 ~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~-p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~  318 (384)
                      ....    .+..+ ++|+.|.+.+.....  ...+...+ ++|+.|.+++|..+..-..-..+|++|.+++
T Consensus       122 n~~~----~L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        122 SATD----SIKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI  186 (426)
T ss_pred             CCCc----ccccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence            3211    11222 356666654322100  00000112 4677777777764421111124677777764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.86  E-value=2.5e-05  Score=63.75  Aligned_cols=133  Identities=19%  Similarity=0.134  Sum_probs=60.2

Q ss_pred             cccCccccCCCCccEEEecCeeec-CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeec---
Q 016710          141 FNLPEIILCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLEL---  215 (384)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~l~-~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i---  215 (384)
                      ..+|..+..+++|+.|++.++.+. .|.. .++|.|+.|++.-++.  ..+.+=+.++|.||.|++.++.-.+..-.   
T Consensus        46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynnl~e~~lpgnf  123 (264)
T KOG0617|consen   46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNNLNENSLPGNF  123 (264)
T ss_pred             eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhccccccccccCCcch
Confidence            344444555555555555555444 2222 2455555555543332  00111123455555555555422211100   


Q ss_pred             CCCCCCceEEeccccccceeee---cCCceeEEEEeCcccccceeccccCccCcEEEeeccccc
Q 016710          216 SGLTKLNKFEVCDAEELQRLCI---IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIK  276 (384)
Q Consensus       216 ~~~~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  276 (384)
                      -.+..|+-|.+++.. +.-+.-   ...+|+.|.+.++.....+-.++.+..|++|++.++.++
T Consensus       124 f~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  124 FYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence            112345555555442 111111   223444444444443334455667788888888877643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.70  E-value=0.0012  Score=44.92  Aligned_cols=39  Identities=15%  Similarity=0.177  Sum_probs=20.2

Q ss_pred             cccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          259 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      +..+++|++|+++++.+..- ....+.++++|++|+++++
T Consensus        21 f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   21 FSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             HcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            44456666666665554321 1233455566666666554

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.68  E-value=0.00057  Score=67.72  Aligned_cols=198  Identities=17%  Similarity=0.133  Sum_probs=115.6

Q ss_pred             ccceeEEEEecCCCcCCCchhHHHHHHHHH--hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCCCc-c--
Q 016710           95 IRLMNFSLFVPGDSLEICLPYIDQCIFYAL--GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRS-V--  169 (384)
Q Consensus        95 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~--~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~-~--  169 (384)
                      .+++.|+......   .+...+.. +....  -...+.+.+.-....++.=|-.++.++.|++|.+.+|.+.-..+ .  
T Consensus        55 ~~~~~f~a~~s~~---ads~vl~q-Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~l  130 (1096)
T KOG1859|consen   55 APVDYFRAYVSDN---ADSRVLEQ-LQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQEL  130 (1096)
T ss_pred             CCCceeEEecCCc---ccchHHHH-HHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHH
Confidence            5777777765433   22222222 22222  24555666543222222227778889999999999986551110 0  


Q ss_pred             -------------------------------CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCC
Q 016710          170 -------------------------------KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGL  218 (384)
Q Consensus       170 -------------------------------~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~  218 (384)
                                                     ....|.+.+++++..  ..+..-+.-.|.||.|+|+.++..+.-.+.-|
T Consensus       131 r~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l  208 (1096)
T KOG1859|consen  131 RHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDNLRRL  208 (1096)
T ss_pred             HHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHHHHhc
Confidence                                           112233334444433  11112223357788999988765543345567


Q ss_pred             CCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeec
Q 016710          219 TKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA  296 (384)
Q Consensus       219 ~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~  296 (384)
                      ++|++|++++..  .++.+.....+|..|.+.++.... ...+.++.+|..|++++|-+.+..-...+..+..|+.|.+.
T Consensus       209 ~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le  287 (1096)
T KOG1859|consen  209 PKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE  287 (1096)
T ss_pred             ccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence            899999999865  555666555568888888765211 12356678888889888766554444444556678888888


Q ss_pred             ccc
Q 016710          297 GCD  299 (384)
Q Consensus       297 ~c~  299 (384)
                      |.+
T Consensus       288 GNP  290 (1096)
T KOG1859|consen  288 GNP  290 (1096)
T ss_pred             CCc
Confidence            854

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.57  E-value=0.016  Score=60.85  Aligned_cols=260  Identities=18%  Similarity=0.174  Sum_probs=132.7

Q ss_pred             hhhhhhHHHHHHHHHhcccCCcccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCCCCCcccCccccCCCC
Q 016710           73 KQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNS  152 (384)
Q Consensus        73 ~~~~~~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~  152 (384)
                      +.+..-+...|++.|-....-.....+..++       .-...+.-|++......-+. .+-..+.+....|... ....
T Consensus       454 d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmH-------DvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~-~~~~  524 (889)
T KOG4658|consen  454 DVGYDYIEELVRASLLIEERDEGRKETVKMH-------DVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVK-SWNS  524 (889)
T ss_pred             cchHHHHHHHHHHHHHhhcccccceeEEEee-------HHHHHHHHHHhccccccccc-eEEECCcCcccccccc-chhh
Confidence            4555667777777774432210022232222       11133444444433222333 2211111223334332 2345


Q ss_pred             ccEEEecCeeec-CCCccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCcee--ecCCCCCCceEEecc
Q 016710          153 IEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCD  228 (384)
Q Consensus       153 L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--~i~~~~~L~~L~l~~  228 (384)
                      .+++.+-++.+. .+....++.|++|-+.++.. -......++...|.|+.|++++|.....+  .|+.+-+||.|++++
T Consensus       525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD  604 (889)
T ss_pred             eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence            666666665443 45555678899999988752 11222234667899999999988766443  456677999999998


Q ss_pred             ccccceeeecC---CceeEEEEeCcccccce-eccccCccCcEEEeeccc-cchHHHHHHhccCCCcceEeeccccc--c
Q 016710          229 AEELQRLCIIA---QDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDD--L  301 (384)
Q Consensus       229 ~~~l~~~~~~~---p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~~--l  301 (384)
                      +. +..++...   ..|.+|++..+...... -....+++|++|.+.... ..+.....-+.++.+|+.|.+.....  +
T Consensus       605 t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~  683 (889)
T KOG4658|consen  605 TG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLL  683 (889)
T ss_pred             CC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhH
Confidence            74 33443333   34555555544321111 223447899999886554 22223333345666666666654332  0


Q ss_pred             cccccCCCcccEEe----ccccccce--eecccCCCCceeEEeccccc
Q 016710          302 KSINISSRSLKLLE----IYDCLRLV--EVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       302 ~~~~~~~~~L~~L~----l~~c~~l~--~~~~~~~~L~~L~l~~~~~~  343 (384)
                      +.+ ...++|..+.    +..|..-.  ......++|+.|.+.++.++
T Consensus       684 e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  684 EDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence            111 1123333222    22221111  22355777777777777664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.55  E-value=0.00024  Score=65.37  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=37.7

Q ss_pred             HHhccCCCcceEeecccccccccc----cCCCcccEEeccccc--cce-eecccCCCCceeEEeccccc
Q 016710          282 NQISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       282 ~l~~~~p~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L~l~~~~~~  343 (384)
                      .-+..+|+|++|++++.. ++.+.    .....++.|.+....  .+. .+..+...|++|.++||.++
T Consensus       268 ~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             HHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            346677888888887754 32222    233567777776431  222 34467888888888888763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.53  E-value=0.0012  Score=44.94  Aligned_cols=13  Identities=23%  Similarity=0.284  Sum_probs=5.8

Q ss_pred             CCCccEEEecCee
Q 016710          150 SNSIEILTLAGLK  162 (384)
Q Consensus       150 ~~~L~~L~L~~~~  162 (384)
                      +++|++|+++++.
T Consensus        24 l~~L~~L~l~~N~   36 (61)
T PF13855_consen   24 LPNLETLDLSNNN   36 (61)
T ss_dssp             GTTESEEEETSSS
T ss_pred             CCCCCEeEccCCc
Confidence            4444444444443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.52  E-value=0.0047  Score=58.49  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=91.0

Q ss_pred             CCCCccEEEecCeeec-CCCccCCC-CCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710          149 CSNSIEILTLAGLKLE-SPRSVKLS-SLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  226 (384)
Q Consensus       149 ~~~~L~~L~L~~~~l~-~~~~~~~~-~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l  226 (384)
                      .|+++++|++++|.+. .|   .+| +|++|.+.+|.. -..+...+  .+.|+.|.+.+|..+..+    .++|+.|.+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~sL----P~sLe~L~L  119 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISGL----PESVRSLEI  119 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCccccccc----ccccceEEe
Confidence            3788999999998665 33   344 699999988653 11111111  358999999998655421    248888888


Q ss_pred             ccccccceeeecCCceeEEEEeCcccccceeccc-c-CccCcEEEeeccccchHHHHHHhccC-CCcceEeecccc--cc
Q 016710          227 CDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLA-S-CKFLKYLRFALTHIKDEWLCNQISKF-PLLESLLIAGCD--DL  301 (384)
Q Consensus       227 ~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~-~-~~~L~~L~L~~~~~~~~~~~~l~~~~-p~L~~L~l~~c~--~l  301 (384)
                      .. .....+..-.++|+.|.+.+.... ....+. . .++|++|.+.++....     +...+ ..|+.|+++.+.  .+
T Consensus       120 ~~-n~~~~L~~LPssLk~L~I~~~n~~-~~~~lp~~LPsSLk~L~Is~c~~i~-----LP~~LP~SLk~L~ls~n~~~sL  192 (426)
T PRK15386        120 KG-SATDSIKNVPNGLTSLSINSYNPE-NQARIDNLISPSLKTLSLTGCSNII-----LPEKLPESLQSITLHIEQKTTW  192 (426)
T ss_pred             CC-CCCcccccCcchHhheeccccccc-cccccccccCCcccEEEecCCCccc-----CcccccccCcEEEecccccccc
Confidence            63 333334444568888887542210 000011 1 2689999998876331     12222 489999987642  22


Q ss_pred             cccccCC-CcccEEeccccccc
Q 016710          302 KSINISS-RSLKLLEIYDCLRL  322 (384)
Q Consensus       302 ~~~~~~~-~~L~~L~l~~c~~l  322 (384)
                      +...... +++ .|.+.+|..+
T Consensus       193 eI~~~sLP~nl-~L~f~n~lkL  213 (426)
T PRK15386        193 NISFEGFPDGL-DIDLQNSVLL  213 (426)
T ss_pred             cCccccccccc-Eechhhhccc
Confidence            2122222 466 7777777543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.51  E-value=1.7e-05  Score=72.93  Aligned_cols=155  Identities=18%  Similarity=0.134  Sum_probs=75.7

Q ss_pred             CcccCccccCCCCccEEEecCeeec--CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCC
Q 016710          140 RFNLPEIILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSG  217 (384)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~  217 (384)
                      ..++|..++.|.+|..|.+.++.+.  ++....+..|++|+...+-.  +.+..-+.+...|+.|++..++......+.+
T Consensus       149 i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~g  226 (565)
T KOG0472|consen  149 ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFPG  226 (565)
T ss_pred             cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCCc
Confidence            4455555555555555555554443  22223455555555544422  1122223344455666666554433334455


Q ss_pred             CCCCceEEecccc--cccee-eecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEe
Q 016710          218 LTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL  294 (384)
Q Consensus       218 ~~~L~~L~l~~~~--~l~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~  294 (384)
                      |..|++|.++...  .++.- ..+.+++..|++.++....++..+.-+.+|..|++++++++.  +..-++++ .|+.|.
T Consensus       227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLA  303 (565)
T ss_pred             cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeehh
Confidence            5566666665442  11111 124556666666665544444445555666666666665432  12223344 455555


Q ss_pred             ecccc
Q 016710          295 IAGCD  299 (384)
Q Consensus       295 l~~c~  299 (384)
                      +.|.+
T Consensus       304 leGNP  308 (565)
T KOG0472|consen  304 LEGNP  308 (565)
T ss_pred             hcCCc
Confidence            55543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.49  E-value=2.5e-05  Score=71.88  Aligned_cols=195  Identities=15%  Similarity=0.105  Sum_probs=97.0

Q ss_pred             CCcccCccccCCCCccEEEecCeeec-CC-CccCCCCCCeEEeeeeec--ChHHHHHHHcCCCCccEEEeeeCCCCcee-
Q 016710          139 PRFNLPEIILCSNSIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDA--TDLVLQSLLIGCPLIEYLSLQLCPGLKNL-  213 (384)
Q Consensus       139 ~~~~lp~~l~~~~~L~~L~L~~~~l~-~~-~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le~L~L~~c~~~~~~-  213 (384)
                      ....+|..+++..+|++|+.+.+.+. .+ ....+..|+.|+..++.+  ...+    ...|.+|..|.+.++.-.+.. 
T Consensus       102 ~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~----~~~~~~l~~l~~~~n~l~~l~~  177 (565)
T KOG0472|consen  102 KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED----MVNLSKLSKLDLEGNKLKALPE  177 (565)
T ss_pred             hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH----HHHHHHHHHhhccccchhhCCH
Confidence            34556666666666666665554333 22 222455555555555544  1111    112233444444443211100 


Q ss_pred             -ecCCCCCCceEEeccccccceeeecC---CceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCC
Q 016710          214 -ELSGLTKLNKFEVCDAEELQRLCIIA---QDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPL  289 (384)
Q Consensus       214 -~i~~~~~L~~L~l~~~~~l~~~~~~~---p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~  289 (384)
                       .+. ...|++|+.... .+..+.-..   .+|+.|++..+.....+ .+++|..|++|+++.+.+.. --.+....++.
T Consensus       178 ~~i~-m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~  253 (565)
T KOG0472|consen  178 NHIA-MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNS  253 (565)
T ss_pred             HHHH-HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh-hHHHHhccccc
Confidence             011 234444443322 122222222   22333333333322223 67788888888887776432 12344567788


Q ss_pred             cceEeecccc--cccccccCCCcccEEecccc--ccceeecccCCCCceeEEecccc
Q 016710          290 LESLLIAGCD--DLKSINISSRSLKLLEIYDC--LRLVEVKIAASSLSIFKYSGDVI  342 (384)
Q Consensus       290 L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~  342 (384)
                      |..||+.+.+  .+..-.+...+|.+|++++.  .++..-..++ +|..|.+.||++
T Consensus       254 l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  254 LLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            8888887754  33333344567888888853  3444444556 788888888876

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.37  E-value=0.0049  Score=33.83  Aligned_cols=25  Identities=44%  Similarity=0.592  Sum_probs=22.8

Q ss_pred             CCCeEEeeeeec-ChHHHHHHHcCCC
Q 016710          173 SLTKLFLMRVDA-TDLVLQSLLIGCP  197 (384)
Q Consensus       173 ~L~~L~L~~~~~-~~~~l~~l~~~~p  197 (384)
                      +||+|+|.++.+ ++..++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 7778999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.20  E-value=0.0012  Score=57.70  Aligned_cols=106  Identities=19%  Similarity=0.112  Sum_probs=56.9

Q ss_pred             HcCCCCccEEEeeeCCCCceeecCCCCCCceEEecccc-----ccceeeecCCceeEEEEeCccccc--ceeccccCccC
Q 016710          193 LIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE-----ELQRLCIIAQDVQEVSIQGPLPFQ--CKFNLASCKFL  265 (384)
Q Consensus       193 ~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~-----~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L  265 (384)
                      ...+-.|+.|++.++.-........+|+|+.|.+++..     .+..+...+|+|+.+.++++....  ..-.+..+++|
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            33444455555555443333333456677777777662     334444456788888777766332  11123445667


Q ss_pred             cEEEeeccccch--HHHHHHhccCCCcceEeeccc
Q 016710          266 KYLRFALTHIKD--EWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       266 ~~L~L~~~~~~~--~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      ..|++..|..+.  +.-..++.-+|+|+.|+-..+
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            777776655331  222344455666666665443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.17  E-value=0.0022  Score=61.55  Aligned_cols=163  Identities=21%  Similarity=0.243  Sum_probs=77.7

Q ss_pred             CCCccEEEecCeeec-CCCcc-CC-CCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecC-CCCCCceEE
Q 016710          150 SNSIEILTLAGLKLE-SPRSV-KL-SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELS-GLTKLNKFE  225 (384)
Q Consensus       150 ~~~L~~L~L~~~~l~-~~~~~-~~-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~-~~~~L~~L~  225 (384)
                      .+.++.|.+.++.+. .+... .+ ++|+.|+++++.+...  ..-+..+|.|+.|.+.++......... ..+.|+.|+
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence            456677777665544 23222 33 2677777777665221  122445777777777776544322222 345666666


Q ss_pred             eccccccceeee---cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc
Q 016710          226 VCDAEELQRLCI---IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK  302 (384)
Q Consensus       226 l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~  302 (384)
                      +++.. +..+..   ...+|+++.++++........+..+.++..+.+..+...+  +...+..+++++.|+++++. +.
T Consensus       193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~-i~  268 (394)
T COG4886         193 LSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQ-IS  268 (394)
T ss_pred             ccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccccc-cc
Confidence            66653 222221   1223555555554322222233444555555544444322  12334455556666665543 11


Q ss_pred             cc--ccCCCcccEEeccc
Q 016710          303 SI--NISSRSLKLLEIYD  318 (384)
Q Consensus       303 ~~--~~~~~~L~~L~l~~  318 (384)
                      .+  .....+|++|++.+
T Consensus       269 ~i~~~~~~~~l~~L~~s~  286 (394)
T COG4886         269 SISSLGSLTNLRELDLSG  286 (394)
T ss_pred             ccccccccCccCEEeccC
Confidence            11  22234555555553

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.14  E-value=0.0018  Score=58.32  Aligned_cols=37  Identities=32%  Similarity=0.577  Sum_probs=34.6

Q ss_pred             ccccCCCC----HHHHHHHhcCCCccceeehhhhhhhhhhh
Q 016710            7 IDRISNLP----EPILHHILSFLPFTQTVQTRVLSRTWKRA   43 (384)
Q Consensus         7 ~d~is~LP----deil~~I~s~L~~~~~~~~~~vskrW~~l   43 (384)
                      -|.|+.||    |+|...||+||+..+++.+-.|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            57789999    99999999999999999999999999863

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.99  E-value=0.001  Score=58.07  Aligned_cols=88  Identities=22%  Similarity=0.169  Sum_probs=59.5

Q ss_pred             cCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCC--cee-ecCC
Q 016710          143 LPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGL--KNL-ELSG  217 (384)
Q Consensus       143 lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~--~~~-~i~~  217 (384)
                      +....-....|+.|++.++.+. ......+|+||.|.++.+.+ ....+.-++..||+|..|+++++..-  ..+ ....
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            3333334567777777776655 33334688999999999866 55566677778899999999987532  111 1234


Q ss_pred             CCCCceEEecccc
Q 016710          218 LTKLNKFEVCDAE  230 (384)
Q Consensus       218 ~~~L~~L~l~~~~  230 (384)
                      +++|.+|++..|.
T Consensus       115 l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  115 LENLKSLDLFNCS  127 (260)
T ss_pred             hcchhhhhcccCC
Confidence            5678888888886

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.80  E-value=0.0027  Score=58.72  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=39.6

Q ss_pred             CCCcEEEEEeCCCCCcccCcccc-CCCCccEEEecCeeec--CCCcc-CCCCCCeEEeee-eec
Q 016710          126 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMR-VDA  184 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~--~~~~~-~~~~L~~L~L~~-~~~  184 (384)
                      +...++.|+  .+....+|...+ ..++|++|+|+.+.+.  .+.++ .+++|.+|.+++ +++
T Consensus        67 ~~tveirLd--qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   67 PETVEIRLD--QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             CcceEEEec--cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            345555554  445677888766 4899999999998776  23333 688888888887 555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.62  E-value=0.008  Score=57.63  Aligned_cols=166  Identities=19%  Similarity=0.181  Sum_probs=106.4

Q ss_pred             CCcEEEEEeCCCCCcccCccccCCC-CccEEEecCeeec-CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          127 NVKELSLELLGNPRFNLPEIILCSN-SIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       127 ~l~~L~l~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~l~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      .+..+.+.  ......++......+ +|+.|+++++.+. .+ ....+++|+.|+++++.+.+  +.......+.|+.|.
T Consensus       117 ~l~~L~l~--~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~  192 (394)
T COG4886         117 NLTSLDLD--NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD  192 (394)
T ss_pred             ceeEEecC--CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence            45555553  444677777776674 9999999998777 32 44579999999999998622  222233688899999


Q ss_pred             eeeCCCCceeec-CCCCCCceEEecccccccee--eecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHH
Q 016710          204 LQLCPGLKNLEL-SGLTKLNKFEVCDAEELQRL--CIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWL  280 (384)
Q Consensus       204 L~~c~~~~~~~i-~~~~~L~~L~l~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  280 (384)
                      ++++........ .....|++|.+.+...+...  .-...++..+.+...........++.+++++.|++.++.+++-..
T Consensus       193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence            998754322121 23335888888877411111  113344444443333222223345667889999999888765332


Q ss_pred             HHHhccCCCcceEeecccc
Q 016710          281 CNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       281 ~~l~~~~p~L~~L~l~~c~  299 (384)
                         +....+++.|++++..
T Consensus       273 ---~~~~~~l~~L~~s~n~  288 (394)
T COG4886         273 ---LGSLTNLRELDLSGNS  288 (394)
T ss_pred             ---ccccCccCEEeccCcc
Confidence               6778899999998854

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.30  E-value=0.025  Score=47.81  Aligned_cols=81  Identities=23%  Similarity=0.282  Sum_probs=55.8

Q ss_pred             CCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCc-----eeecCCCC
Q 016710          149 CSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLK-----NLELSGLT  219 (384)
Q Consensus       149 ~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~-----~~~i~~~~  219 (384)
                      ..++|..|.+.++.+.  .+. ...+|+|++|.|.++.+ .-..+.. +..||.|++|.+-++...+     ...+-.+|
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp  140 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP  140 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecC
Confidence            4688888989887665  222 22688999999999887 5555555 4568999999998875442     22233467


Q ss_pred             CCceEEecccc
Q 016710          220 KLNKFEVCDAE  230 (384)
Q Consensus       220 ~L~~L~l~~~~  230 (384)
                      +|+.|++....
T Consensus       141 ~l~~LDF~kVt  151 (233)
T KOG1644|consen  141 SLRTLDFQKVT  151 (233)
T ss_pred             cceEeehhhhh
Confidence            77777777654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.0057  Score=51.55  Aligned_cols=65  Identities=23%  Similarity=0.318  Sum_probs=49.4

Q ss_pred             cccCccCcEEEeeccc-cchHHHHHHhccCCCcceEeecccccccccccC----CCcccEEeccccccce
Q 016710          259 LASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSINIS----SRSLKLLEIYDCLRLV  323 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~----~~~L~~L~l~~c~~l~  323 (384)
                      +..++.++.|.+.+|. +.|..+..+-+-.|+|+.|+|++|+.++..+..    +++|+.|.|.+...+.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence            4557788888888887 555666666667899999999999988876543    4889999888765443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.03  E-value=0.024  Score=35.61  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=22.1

Q ss_pred             ccCcEEEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710          263 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       263 ~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~  299 (384)
                      ++|++|++.++.+++  +...+.++++|+.|+++++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            467777777777654  34446677777777777764

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.01  E-value=0.033  Score=34.99  Aligned_cols=38  Identities=16%  Similarity=0.193  Sum_probs=25.4

Q ss_pred             CceeEEEEeCcccccceeccccCccCcEEEeeccccch
Q 016710          240 QDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKD  277 (384)
Q Consensus       240 p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  277 (384)
                      |+|++|++.++.....+..+..+++|+.|+++++.+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            46778888777655554446778888888888777653

...

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.75  E-value=0.012  Score=52.79  Aligned_cols=33  Identities=27%  Similarity=0.474  Sum_probs=29.3

Q ss_pred             cCCCCHHHHHHHhc-----CCCccceeehhhhhhhhhh
Q 016710           10 ISNLPEPILHHILS-----FLPFTQTVQTRVLSRTWKR   42 (384)
Q Consensus        10 is~LPdeil~~I~s-----~L~~~~~~~~~~vskrW~~   42 (384)
                      |+.|||||+..||.     .++.+++.++++|||.|..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            67899999999997     4567999999999999975

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.52  E-value=0.0071  Score=60.31  Aligned_cols=78  Identities=15%  Similarity=0.187  Sum_probs=46.6

Q ss_pred             cCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc--cccccccCCCcccEEeccccccceeec--ccCCCCceeE
Q 016710          261 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD--DLKSINISSRSLKLLEIYDCLRLVEVK--IAASSLSIFK  336 (384)
Q Consensus       261 ~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~L~~L~  336 (384)
                      -+|.|+.|+|+.|++++..   .+..|+.|++|||++..  .+..+....-+|..|.++|. .++.+.  .++.+|+-|+
T Consensus       185 ll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~gie~LksL~~LD  260 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLRGIENLKSLYGLD  260 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhhhHHhhhhhhccc
Confidence            3688899999988887633   56678999999998732  33333333334666666642 122111  3455555555


Q ss_pred             Eecccc
Q 016710          337 YSGDVI  342 (384)
Q Consensus       337 l~~~~~  342 (384)
                      +++|-+
T Consensus       261 lsyNll  266 (1096)
T KOG1859|consen  261 LSYNLL  266 (1096)
T ss_pred             hhHhhh
Confidence            555543

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=93.89  E-value=0.025  Score=52.90  Aligned_cols=38  Identities=29%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             ccCCCCHHHHHHHhcCCC-ccceeehhhhhhhhhhhhcc
Q 016710            9 RISNLPEPILHHILSFLP-FTQTVQTRVLSRTWKRAWHT   46 (384)
Q Consensus         9 ~is~LPdeil~~I~s~L~-~~~~~~~~~vskrW~~lw~~   46 (384)
                      .+++||+|+|..|.++|+ .-|+++.+.|||.||.....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            367999999999999996 57999999999999986543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.85  E-value=0.0026  Score=56.22  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=16.5

Q ss_pred             CCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeee
Q 016710          170 KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQL  206 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~  206 (384)
                      .|.+|+.|.|..+.+ +-..+.. +.+.|+|+.|+|..
T Consensus        61 rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~E   97 (388)
T KOG2123|consen   61 RCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhcc
Confidence            344455555544444 2223322 34455555555554

>PLN03150 hypothetical protein; Provisional

Probab=93.80  E-value=0.12  Score=52.60  Aligned_cols=77  Identities=10%  Similarity=0.064  Sum_probs=37.8

Q ss_pred             eeEEEEeCccc-ccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccc---cccccCCCcccEEecc
Q 016710          242 VQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL---KSINISSRSLKLLEIY  317 (384)
Q Consensus       242 L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l---~~~~~~~~~L~~L~l~  317 (384)
                      ++.|++.++.. ...+..+..+++|+.|+|+++.+... +...+..+++|+.|+++++..-   ......+++|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            44444444331 11223345566666666666655432 2233455666666666665421   1222344566666666


Q ss_pred             cc
Q 016710          318 DC  319 (384)
Q Consensus       318 ~c  319 (384)
                      ++
T Consensus       499 ~N  500 (623)
T PLN03150        499 GN  500 (623)
T ss_pred             CC
Confidence            54

>PLN03150 hypothetical protein; Provisional

Probab=93.79  E-value=0.084  Score=53.82  Aligned_cols=78  Identities=12%  Similarity=0.153  Sum_probs=48.4

Q ss_pred             CceEEeccccc---cceeeecCCceeEEEEeCcccc-cceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeec
Q 016710          221 LNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA  296 (384)
Q Consensus       221 L~~L~l~~~~~---l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~  296 (384)
                      +..|.+.++.-   +..-....++|+.|+++++... ..+..+..+++|+.|+|++|.++.. +...+.++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence            56666666541   1111124567788887776532 3333466778888888887776543 23445677888888887


Q ss_pred             ccc
Q 016710          297 GCD  299 (384)
Q Consensus       297 ~c~  299 (384)
                      ++.
T Consensus       499 ~N~  501 (623)
T PLN03150        499 GNS  501 (623)
T ss_pred             CCc
Confidence            765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.63  E-value=0.22  Score=42.22  Aligned_cols=78  Identities=18%  Similarity=0.104  Sum_probs=48.3

Q ss_pred             CCCccEEEecCeeec-CCCccCCCCCCeEEeeeeec--ChHHHHHHHcCCCCccEEEeeeCCCCce---eecCCCCCCce
Q 016710          150 SNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA--TDLVLQSLLIGCPLIEYLSLQLCPGLKN---LELSGLTKLNK  223 (384)
Q Consensus       150 ~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le~L~L~~c~~~~~---~~i~~~~~L~~  223 (384)
                      ......++|+.+.+. ......++.|.+|.|.++.+  -+..+.   ...|+|..|.+.++...+.   .....||+|+.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCccce
Confidence            345566777776554 33344688899999999888  233333   3477888888887643321   12345666666


Q ss_pred             EEecccc
Q 016710          224 FEVCDAE  230 (384)
Q Consensus       224 L~l~~~~  230 (384)
                      |++.+.+
T Consensus       118 Ltll~Np  124 (233)
T KOG1644|consen  118 LTLLGNP  124 (233)
T ss_pred             eeecCCc
Confidence            6666553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.71  E-value=0.028  Score=47.45  Aligned_cols=61  Identities=26%  Similarity=0.341  Sum_probs=41.2

Q ss_pred             CCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCceee---cCCCCCCceEEecccc
Q 016710          170 KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---LSGLTKLNKFEVCDAE  230 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~---i~~~~~L~~L~l~~~~  230 (384)
                      .++.++.|.+.+|.. ++..++.+-...|+|+.|.|++|..+++--   +..+++|+.|.+.+-+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            567777777887777 777787777777788888888777664321   2234566666666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.36  E-value=0.3  Score=43.40  Aligned_cols=175  Identities=19%  Similarity=0.048  Sum_probs=95.7

Q ss_pred             CCCCCCeEEeeeeec---ChHHHHHHHcCCCCccEEEeeeCCCC--c-------------eeecCCCCCCceEEecccc-
Q 016710          170 KLSSLTKLFLMRVDA---TDLVLQSLLIGCPLIEYLSLQLCPGL--K-------------NLELSGLTKLNKFEVCDAE-  230 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~L~~c~~~--~-------------~~~i~~~~~L~~L~l~~~~-  230 (384)
                      .||.|++.+|+++.+   ...-+..++++...|+.|.+++|..-  .             .-.+..-|.|+........ 
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            445555555555554   22334455555566666666665321  0             0122334666666655543 


Q ss_pred             -ccc----eeee-cCCceeEEEEeCcccccc------eeccccCccCcEEEeeccccchHHH---HHHhccCCCcceEee
Q 016710          231 -ELQ----RLCI-IAQDVQEVSIQGPLPFQC------KFNLASCKFLKYLRFALTHIKDEWL---CNQISKFPLLESLLI  295 (384)
Q Consensus       231 -~l~----~~~~-~~p~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~p~L~~L~l  295 (384)
                       +.+    .... .-.+|..+++-.+...+-      ...+..+.+|+.|+|..|.++...-   ...+..-++|+.|.+
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence             100    0001 114677777755543221      1123457899999999998876532   234455678999999


Q ss_pred             cccccc----ccc----c-cCCCcccEEeccccc---------cceee-cccCCCCceeEEecccccc
Q 016710          296 AGCDDL----KSI----N-ISSRSLKLLEIYDCL---------RLVEV-KIAASSLSIFKYSGDVISF  344 (384)
Q Consensus       296 ~~c~~l----~~~----~-~~~~~L~~L~l~~c~---------~l~~~-~~~~~~L~~L~l~~~~~~~  344 (384)
                      .+|-.-    ...    . ...|+|..|......         ++..+ ..+.|-|..|.+.||.+.+
T Consensus       250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            998521    111    1 134888888876321         11111 1468889999999887643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.36  E-value=0.016  Score=51.31  Aligned_cols=94  Identities=17%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             CCceEEeccccccceeee--cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecc
Q 016710          220 KLNKFEVCDAEELQRLCI--IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAG  297 (384)
Q Consensus       220 ~L~~L~l~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~  297 (384)
                      +.++|..++|. +.++.+  .+|.|+.|.++-+.... ...+..|.+|++|+|..|.+.+-.-...+.++|+|+.|.|..
T Consensus        20 ~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCC-ccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            55666666663 333333  57777777776554221 123556888999988777766655567778889999998887


Q ss_pred             cccccc--------cccCCCcccEEe
Q 016710          298 CDDLKS--------INISSRSLKLLE  315 (384)
Q Consensus       298 c~~l~~--------~~~~~~~L~~L~  315 (384)
                      .+=...        .....|+|+.|+
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhcc
Confidence            442211        222457888776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=89.05  E-value=0.073  Score=51.44  Aligned_cols=102  Identities=19%  Similarity=0.078  Sum_probs=62.3

Q ss_pred             cccCCCCccEEEecCeeec-CCC-ccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCc
Q 016710          146 IILCSNSIEILTLAGLKLE-SPR-SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLN  222 (384)
Q Consensus       146 ~l~~~~~L~~L~L~~~~l~-~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~  222 (384)
                      .+..+++|+.|++.++.+. ... ...+++|++|+++++.+ +...+.    .++.|+.|++.++..........++.|+
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~  165 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLK  165 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhh
Confidence            3455788888888887776 333 34688888888888887 444433    3445888888887554333333456777


Q ss_pred             eEEecccc--cccee-eecCCceeEEEEeCcc
Q 016710          223 KFEVCDAE--ELQRL-CIIAQDVQEVSIQGPL  251 (384)
Q Consensus       223 ~L~l~~~~--~l~~~-~~~~p~L~~L~l~~~~  251 (384)
                      .++++++.  .+... ....++++.+.+.++.
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            77777765  11110 1334455555555543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=88.01  E-value=0.16  Score=50.50  Aligned_cols=40  Identities=35%  Similarity=0.550  Sum_probs=36.3

Q ss_pred             CCCccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhh
Q 016710            4 LSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA   43 (384)
Q Consensus         4 ~~~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~l   43 (384)
                      ....|.++.||-|+..+||+||+.++++++++||+.|+..
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            3456889999999999999999999999999999999864

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=86.91  E-value=0.16  Score=49.10  Aligned_cols=161  Identities=15%  Similarity=0.102  Sum_probs=88.3

Q ss_pred             CCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEe
Q 016710          127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       127 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L  204 (384)
                      ++..+++.  .+...++...+..+++|++|+++++.+. ......++.|+.|++.++.+ +...+.    .++.|+.+.+
T Consensus        96 ~l~~l~l~--~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~----~l~~L~~l~l  169 (414)
T KOG0531|consen   96 SLEALDLY--DNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLE----SLKSLKLLDL  169 (414)
T ss_pred             ceeeeecc--ccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCc----cchhhhcccC
Confidence            44444442  3333444443566899999999998877 34444677899999999987 333332    3778888888


Q ss_pred             eeCCCCceee--cCCCCCCceEEeccccccceeee--cCCceeEEEEeCcccccceeccccCcc--CcEEEeeccccchH
Q 016710          205 QLCPGLKNLE--LSGLTKLNKFEVCDAEELQRLCI--IAQDVQEVSIQGPLPFQCKFNLASCKF--LKYLRFALTHIKDE  278 (384)
Q Consensus       205 ~~c~~~~~~~--i~~~~~L~~L~l~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~--L~~L~L~~~~~~~~  278 (384)
                      .++.......  ...+.+++.+.+.+.. +..+..  ..-.+..+++.++.... ...+.....  |+.+++.++.+...
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~~~~~~~l~~~~l~~n~i~~-~~~l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNS-IREIEGLDLLKKLVLLSLLDNKISK-LEGLNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCc-hhcccchHHHHHHHHhhccccccee-ccCcccchhHHHHHHhcccCccccc
Confidence            8876553333  3556688888888764 111110  11111112222221100 001112222  67777777665432


Q ss_pred             HHHHHhccCCCcceEeecc
Q 016710          279 WLCNQISKFPLLESLLIAG  297 (384)
Q Consensus       279 ~~~~l~~~~p~L~~L~l~~  297 (384)
                      .  ..+..+++++.|++..
T Consensus       248 ~--~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  248 P--EGLENLKNLPVLDLSS  264 (414)
T ss_pred             c--ccccccccccccchhh
Confidence            1  3345566777777665

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.65  E-value=0.7  Score=25.07  Aligned_cols=21  Identities=38%  Similarity=0.319  Sum_probs=11.2

Q ss_pred             CCCCeEEeeeeec-ChHHHHHH
Q 016710          172 SSLTKLFLMRVDA-TDLVLQSL  192 (384)
Q Consensus       172 ~~L~~L~L~~~~~-~~~~l~~l  192 (384)
                      ++|+.|++++|.. ++.++..+
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            4555555555543 55555543

>PF13013 F-box-like_2: F-box-like domain

Probab=83.66  E-value=0.53  Score=35.93  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=26.4

Q ss_pred             cCCCCHHHHHHHhcCCCccceeehhhhhh
Q 016710           10 ISNLPEPILHHILSFLPFTQTVQTRVLSR   38 (384)
Q Consensus        10 is~LPdeil~~I~s~L~~~~~~~~~~vsk   38 (384)
                      +.+||+||+..||.+-+..++......|+
T Consensus        22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   22 LLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            66899999999999999999988888877

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=83.02  E-value=0.031  Score=54.38  Aligned_cols=58  Identities=9%  Similarity=0.099  Sum_probs=35.6

Q ss_pred             ceeEEEEeCcccccceeccccCccCcEEEeeccccchHH-HHHHhccCCCcceEeeccc
Q 016710          241 DVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEW-LCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       241 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~~~p~L~~L~l~~c  298 (384)
                      .|.+|+++.+.....++.+..+..|++|.|.+|.+..-. -...-+...-.+.|++.-|
T Consensus       212 pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  212 PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            467777777776667777777888888888877754321 1111223344556666555

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.75  E-value=1.2  Score=23.57  Aligned_cols=22  Identities=23%  Similarity=0.134  Sum_probs=13.1

Q ss_pred             CccCcEEEeeccccchHHHHHH
Q 016710          262 CKFLKYLRFALTHIKDEWLCNQ  283 (384)
Q Consensus       262 ~~~L~~L~L~~~~~~~~~~~~l  283 (384)
                      +++|++|+|+++.++++.+..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3677888888777776665443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 52/369 (14%), Positives = 109/369 (29%), Gaps = 60/369 (16%)

Query: 10  ISNLPEPILHHILSFLPFTQTVQT-RVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDG 68
                + ++  +++++   +   +  ++ R W +          DS+    V +      
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI---------DSETREHVTMALCYTA 63

Query: 69  SEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCI-----FYA 123
           +     +L   F  +  +L+++      + N      G  +   +  I   +      + 
Sbjct: 64  TP---DRLSRRFPNL-RSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHF 119

Query: 124 LGCNVKELSLELLGNPRF-NLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRV 182
               V +L L+ L   R  +L  + L  +     T  GL        K+ +L        
Sbjct: 120 RRMIVSDLDLDRLAKARADDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177

Query: 183 DATDLVLQSLLIGCPLIEYLSLQL-----------------CPGLKNLELSGLTKLNKFE 225
           +     L  L      +E L+  +                 C  L ++++     L    
Sbjct: 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG 237

Query: 226 VCD-AEELQRLCI--IAQDVQEVSIQGPLPFQCKFNLASCKF---------------LKY 267
               A  L+  C   + +D+        L F  K       +               ++ 
Sbjct: 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297

Query: 268 LRFALTHIKDEWLCNQISKFPLLESLLIAGC---DDLKSINISSRSLKLLEIYDCLRLVE 324
           L      ++ E  C  I K P LE L          L+ +    + LK L I        
Sbjct: 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQG 357

Query: 325 VKIAASSLS 333
           ++     +S
Sbjct: 358 MEDEEGLVS 366

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 10/153 (6%)

Query: 171 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE 230
              L  + +   D T+  L+S+      +    L L    + +    L    +  +   +
Sbjct: 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436

Query: 231 ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLL 290
           +L+R          ++  G       +       ++++        DE L       P L
Sbjct: 437 KLRRFAFYL-RQGGLTDLG-----LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490

Query: 291 ESLLIAGC----DDLKSINISSRSLKLLEIYDC 319
           + L + GC      + +      SL+ L +   
Sbjct: 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 7e-07
 Identities = 73/437 (16%), Positives = 125/437 (28%), Gaps = 120/437 (27%)

Query: 10  ISNLPEPIL-----HHILSFLPFTQTVQTR----VLSRTWKRAWHTF--SVLKFDSDFFH 58
           + ++P+ IL      HI+          T      L    +     F   VL+ +  F  
Sbjct: 38  VQDMPKSILSKEEIDHIIM-SK-DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 59  QVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICL----- 113
                +    S      +  ++   ++ L    N++    N S   P   L   L     
Sbjct: 96  SPIKTEQRQPS-----MMTRMYIEQRDRLY-NDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 114 -PYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEI--LTLAGLKLESPRSVK 170
              +   I   LG     ++L++  + +      + C    +I  L L      SP +V 
Sbjct: 150 AKNV--LIDGVLGSGKTWVALDVCLSYK------VQCKMDFKIFWLNLK--NCNSPETV- 198

Query: 171 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE 230
           L  L KL   ++D              L    S+Q        EL  L K   +E C   
Sbjct: 199 LEMLQKLLY-QIDPNWTSRSDHSSNIKL-RIHSIQA-------ELRRLLKSKPYENC--- 246

Query: 231 ELQRLCIIAQDVQEVSIQGPLPFQCK------------------------------FNLA 260
               L ++  +VQ           CK                                  
Sbjct: 247 ----L-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 261 SCK--FLKYLRFALTHIKDEWLCNQISK-FPLLESLLIA---------------GCDDLK 302
             K   LKYL       + + L  ++    P   S++                  CD L 
Sbjct: 302 EVKSLLLKYL-----DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 303 SINISSRSLKLLEIYDCLRLVE--------VKIAASSLSIFKYSGDVISFQLGAITFSKS 354
           +I I S SL +LE  +  ++ +          I    LS+  +        +      K 
Sbjct: 357 TI-IES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 355 HLLFQTENSSSEWYTEH 371
            L+ +    S+   +  
Sbjct: 415 SLVEKQPKEST--ISIP 429

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 64/411 (15%), Positives = 131/411 (31%), Gaps = 94/411 (22%)

Query: 1   MESLSH---------IDRISNLPEPI--LHHILSFLPFTQTVQTR---VLSRTW-KRAWH 45
           ++ L +          D  SN+   I  +   L  L            VL      +AW+
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWN 260

Query: 46  TFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSL-FV 104
            F       +   ++ L  +           +++ +++           I L + S+   
Sbjct: 261 AF-------NLSCKI-LLTTRF---------KQVTDFLSAATTTH----ISLDHHSMTLT 299

Query: 105 PGDSLEICLPYIDQCIFYALGCNVKELSLE-LLGNPRFNLPEIILCSNSIEILTLAGLKL 163
           P +   + L Y        L C  ++L  E L  NPR     II  S    + T    K 
Sbjct: 300 PDEVKSLLLKY--------LDCRPQDLPREVLTTNPR--RLSIIAESIRDGLATWDNWK- 348

Query: 164 ESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKL-- 221
                 KL+++ +  L  ++  +   + +        +  L + P   ++    L+ +  
Sbjct: 349 -HVNCDKLTTIIESSLNVLEPAEY--RKM--------FDRLSVFPPSAHIPTILLSLIWF 397

Query: 222 -NKFEVCD--AEELQRLCIIAQDVQEVSIQGPLP-FQCKFNLASCKFLKYL-RFALTH-- 274
                       +L +  ++ +  +E +I   +P    +      +    L R  + H  
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLEL-KVKLENEYALHRSIVDHYN 454

Query: 275 IKDEWLCNQISKFPLLESLLIAGCDD---------LKSINISSRSLKLLEIYDCLRLVEV 325
           I   +  + +    L         D          LK+I    R      ++   R +E 
Sbjct: 455 IPKTFDSDDLIPPYL---------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 326 KIAASSLSIFKYSGDVISFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQ 376
           KI   S + +  SG +++  L  + F K + +   +           +FL 
Sbjct: 506 KIRHDSTA-WNASGSILNT-LQQLKFYKPY-ICDNDPKYERLVNAILDFLP 553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 37/210 (17%), Positives = 69/210 (32%), Gaps = 22/210 (10%)

Query: 132 SLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQS 191
           S+EL G P F      L  +         ++  S      + L ++ L R+  TD  L+ 
Sbjct: 70  SVELKGKPHFAD--FNLVPDGWGGYVYPWIEAMSSS---YTWLEEIRLKRMVVTDDCLEL 124

Query: 192 LLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPL 251
           +       + L L  C G     L+ +    +        L+ L +   DV +VS     
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN-------LKELDLRESDVDDVSGHWLS 177

Query: 252 PFQCKFNLASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGC---DDLKSINI 306
            F       +   L  L  +     +    L   +++ P L+SL +      + L ++  
Sbjct: 178 HF-----PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232

Query: 307 SSRSLKLLEIYDCLRLVEVKIAASSLSIFK 336
            +  L+ L        V   + +       
Sbjct: 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALS 262

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 28/221 (12%)

Query: 125 GCNVKELSLELLGNPRFNLPEIILCSN----SIEILTLAGLKLESPRSVKLSSLTKLFLM 180
              V+   L  L      L  + +        +E+L      L   R            +
Sbjct: 298 YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357

Query: 181 RVDATDLVLQSLLIGCPLIEYLSL--------------QLCPGLKNLELSGLTKLNKFEV 226
            +  T+  L S+ +GCP +E +                +  P +    L  +       +
Sbjct: 358 AL--TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415

Query: 227 CDA---EELQRLCIIAQDVQEVSIQGPLPFQCKFNLAS-CKFLKYLRFALTHIKDEWLCN 282
                      +    +D++ +S+ G L  +    + +  K ++ L  A     D  + +
Sbjct: 416 TLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475

Query: 283 QISKFPLLESLLIAGC----DDLKSINISSRSLKLLEIYDC 319
            +S    L  L I  C      L +      +++ L +  C
Sbjct: 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 2  ESLSHIDRISNLPEPILHHILSFLPFTQTVQT-RVLSRTWKRAWHTFSVLKF 52
          E    ++ ++ LPEP+L  +L+ LP T+ VQ  R++   WK       +   
Sbjct: 43 EEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLL 94

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 56/343 (16%), Positives = 107/343 (31%), Gaps = 70/343 (20%)

Query: 10  ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGS 69
             +LP+ +L  I S L   + ++   + + W     +   L    D   +    D     
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRW-YRLASDESLWQTLDLTGKNLHPDVTGRL 67

Query: 70  EAGKQKLREIFNYIKETLRIRHNEMIRLMNFSL---FVPGDSLEICLPY----------- 115
            +             +     H    R+ +  L    +   +L   L             
Sbjct: 68  LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127

Query: 116 --IDQCIFYALGCNVKELSLELLGNPRFN---LPEIILCSNSIEILTLAGLKLESPRSVK 170
             +   I   L  N   + L L G   F+   L  ++   + ++ L L+     + + V+
Sbjct: 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187

Query: 171 L------SSLTKLFLMRVDA--TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLN 222
           +       ++T+L L           L +L+  CP + +L L     LKN       +LN
Sbjct: 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247

Query: 223 KFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN 282
                    LQ L                      +L+ C            I  E L  
Sbjct: 248 Y--------LQHL----------------------SLSRC----------YDIIPETLLE 267

Query: 283 QISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEV 325
            + + P L++L + G     ++ +   +L  L+I +C     +
Sbjct: 268 -LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTTI 308

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.51
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.4
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.4
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.4
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.3
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.3
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.24
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.2
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.19
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.14
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.1
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.02
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.01
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.0
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.91
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.9
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.84
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.76
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.62
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.43
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.32
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.28
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.2
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.04
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.01
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.95
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.91
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.88
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.87
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.83
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.82
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.78
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.69
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.59
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.63
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.83
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	84.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	81.6

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=2.9e-24  Score=199.89  Aligned_cols=279  Identities=15%  Similarity=0.162  Sum_probs=166.9

Q ss_pred             CccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhcccceeeeccccccccccCCCCCcchhhhhhhhhHHHHHHH
Q 016710            6 HIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKE   85 (384)
Q Consensus         6 ~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   85 (384)
                      +...|++||||++.+||+||+.+|+++++.|||+|+++... +.                                    
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~------------------------------------   47 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES------------------------------------   47 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST------------------------------------
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch------------------------------------
Confidence            34558899999999999999999999999999999987532 11                                    


Q ss_pred             HHhcccCCcccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-
Q 016710           86 TLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-  164 (384)
Q Consensus        86 ~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-  164 (384)
                                .++.+.+...    ...    +..+.....++++.+++...  .....+..+..+++|++|++++|.+. 
T Consensus        48 ----------~~~~l~l~~~----~~~----~~~~~~~~~~~l~~L~l~~n--~l~~~~~~~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           48 ----------LWQTLDLTGK----NLH----PDVTGRLLSQGVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             ----------TSSEEECTTC----BCC----HHHHHHHHHTTCSEEECTTC--EECSCCCSCCCCBCCCEEECTTCEECH
T ss_pred             ----------hheeeccccc----cCC----HHHHHhhhhccceEEEcCCc--cccccchhhccCCCCCEEEccCCCcCH
Confidence                      1122222100    001    12233334467777766321  12223333556788888888887654 


Q ss_pred             --CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce--e--ecCCCCCCceEEecccccc-----
Q 016710          165 --SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--L--ELSGLTKLNKFEVCDAEEL-----  232 (384)
Q Consensus       165 --~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~--~--~i~~~~~L~~L~l~~~~~l-----  232 (384)
                        .+. ...+++|++|+++++.+++..... +..+++|+.|++.+|..+..  +  .+..+++|+.|++++|..+     
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  186 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV  186 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred             HHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence              111 225788888888888776555544 45588888888888754432  1  1234678888888877322     


Q ss_pred             ceeeecCC-ceeEEEEeCcc--c--ccceeccccCccCcEEEeeccc-cchHHHHHHhccCCCcceEeeccccccccc--
Q 016710          233 QRLCIIAQ-DVQEVSIQGPL--P--FQCKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSI--  304 (384)
Q Consensus       233 ~~~~~~~p-~L~~L~l~~~~--~--~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~--  304 (384)
                      ......+| +|++|+++++.  .  ......+..+++|+.|+++++. +++..+ ..+..+++|++|++++|..+...  
T Consensus       187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~  265 (336)
T 2ast_B          187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETL  265 (336)
T ss_dssp             HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHH
Confidence            22233566 77777777763  1  1122234557788888887776 554433 34456778888888777544322  


Q ss_pred             --ccCCCcccEEeccccccceeecccCCCCceeEEeccccc
Q 016710          305 --NISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       305 --~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~  343 (384)
                        ...+++|++|++.+|..-..+..-..+|+.|+++++.++
T Consensus       266 ~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~  306 (336)
T 2ast_B          266 LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFT  306 (336)
T ss_dssp             GGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSC
T ss_pred             HHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCc
Confidence              234677888888777211112111233555556666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=5.3e-23  Score=205.90  Aligned_cols=284  Identities=13%  Similarity=0.106  Sum_probs=131.7

Q ss_pred             CCCCCCccccC----CCCHHHHHHHhcCC-Cccceeehhhhhhhhhhhhcccc-eeeecccccccc-------ccCCCCC
Q 016710            1 MESLSHIDRIS----NLPEPILHHILSFL-PFTQTVQTRVLSRTWKRAWHTFS-VLKFDSDFFHQV-------FLEDSND   67 (384)
Q Consensus         1 ~~~~~~~d~is----~LPdeil~~I~s~L-~~~~~~~~~~vskrW~~lw~~~~-~l~~~~~~~~~~-------~~~~~~~   67 (384)
                      ||+ +++|+++    .||||++.+||+|| +.+|++++++|||||++++...+ .+.+... +...       +|+ ...
T Consensus         1 m~~-~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~-L~~   77 (592)
T 3ogk_B            1 MED-PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC-YTATPDRLSRRFPN-LRS   77 (592)
T ss_dssp             ------------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG-GGSCHHHHHHHCTT-CSE
T ss_pred             CCC-hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec-cccChHHHHHhCCC-CeE
Confidence            444 3567776    79999999999999 89999999999999998753222 1211110 0000       000 000


Q ss_pred             cchhhhh----------hhhhH-HHHHHHHHhcccCCcccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeC
Q 016710           68 GSEAGKQ----------KLREI-FNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELL  136 (384)
Q Consensus        68 ~~~~~~~----------~~~~~-~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~  136 (384)
                      ....+..          ....+ ...+..+. .. -  +.++.+.++...    .. .....++......++++|++..+
T Consensus        78 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~-~--~~L~~L~L~~~~----i~-~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           78 LKLKGKPRAAMFNLIPENWGGYVTPWVTEIS-NN-L--RQLKSVHFRRMI----VS-DLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             EEEECSCGGGGGTCSCTTSCCBCHHHHHHHH-HH-C--TTCCEEEEESCB----CC-HHHHHHHHHHHGGGCCEEEEESC
T ss_pred             EEecCCcchhhcccccccccccchHHHHHHH-hh-C--CCCCeEEeeccE----ec-HHHHHHHHHhccccCcEEECcCC
Confidence            0000000          00000 00011111 01 1  356666665321    11 22233343333334777777643


Q ss_pred             C-CCCcccCccccCCCCccEEEecCeeecCCC-------ccCCCCCCeEEeeeeecC---hHHHHHHHcCCCCccEEEee
Q 016710          137 G-NPRFNLPEIILCSNSIEILTLAGLKLESPR-------SVKLSSLTKLFLMRVDAT---DLVLQSLLIGCPLIEYLSLQ  205 (384)
Q Consensus       137 ~-~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~-------~~~~~~L~~L~L~~~~~~---~~~l~~l~~~~p~Le~L~L~  205 (384)
                      . .....++.....|++|++|+|++|.+....       ...+++|++|+++++.++   ...+..++..||+|+.|++.
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~  228 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG  228 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence            3 112233333345777888888777654211       125777888887777663   45667777778888888887


Q ss_pred             eCCCCce-eecCCCCCCceEEecccccc------ceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchH
Q 016710          206 LCPGLKN-LELSGLTKLNKFEVCDAEEL------QRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDE  278 (384)
Q Consensus       206 ~c~~~~~-~~i~~~~~L~~L~l~~~~~l------~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  278 (384)
                      +|..... ..+..+++|+.|.+..+...      ......+++|+++.+++......+..+..+++|++|+++++.+++.
T Consensus       229 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~  308 (592)
T 3ogk_B          229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE  308 (592)
T ss_dssp             SCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred             CccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHH
Confidence            7642210 01122345555555432100      0001123344444443322222222233445555555555554444


Q ss_pred             HHHHHhccCCCcceEeec
Q 016710          279 WLCNQISKFPLLESLLIA  296 (384)
Q Consensus       279 ~~~~l~~~~p~L~~L~l~  296 (384)
                      .+..++..+++|+.|+++
T Consensus       309 ~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          309 DHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             HHHHHHTTCTTCCEEEEE
T ss_pred             HHHHHHHhCcCCCEEecc
Confidence            444444555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.88  E-value=8.7e-24  Score=211.59  Aligned_cols=37  Identities=19%  Similarity=0.451  Sum_probs=29.3

Q ss_pred             ccccCCCCHHHHHHHhcCCC-ccceeehhhhhhhhhhh
Q 016710            7 IDRISNLPEPILHHILSFLP-FTQTVQTRVLSRTWKRA   43 (384)
Q Consensus         7 ~d~is~LPdeil~~I~s~L~-~~~~~~~~~vskrW~~l   43 (384)
                      .|+|++|||||+.+||+||+ .+|++++++|||||+++
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            48899999999999999999 99999999999999987

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.64  E-value=2.7e-15  Score=138.96  Aligned_cols=215  Identities=16%  Similarity=0.185  Sum_probs=152.1

Q ss_pred             HHHhCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCc
Q 016710          122 YALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLI  199 (384)
Q Consensus       122 ~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  199 (384)
                      .....+++.|++....  ...+|..+..+++|++|+|+++.+. .+.. ..+++|++|+|+++.+.  .+...+..+++|
T Consensus        77 ~~~~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L  152 (328)
T 4fcg_A           77 DATQPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRL  152 (328)
T ss_dssp             HHTSTTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTC
T ss_pred             cccccceeEEEccCCC--chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCC
Confidence            3344789999997644  4488988889999999999998776 4433 37999999999999874  223346789999


Q ss_pred             cEEEeeeCCCCceeec-----------CCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCc
Q 016710          200 EYLSLQLCPGLKNLEL-----------SGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLK  266 (384)
Q Consensus       200 e~L~L~~c~~~~~~~i-----------~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~  266 (384)
                      +.|++.+|.....+..           ..+++|+.|+++++.  .++......++|+.|+++++.....+..+..+++|+
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~  232 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE  232 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence            9999999876543321           136788888888875  222222356788888888876554444567788888


Q ss_pred             EEEeeccccchHHHHHHhccCCCcceEeecccccccccc---cCCCcccEEeccccccceeec---ccCCCCceeEEecc
Q 016710          267 YLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGD  340 (384)
Q Consensus       267 ~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~  340 (384)
                      .|++++|.+... +...+..+++|+.|++++|.....+.   ..+++|++|+|++|.....++   ..+++|+.+.+..+
T Consensus       233 ~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          233 ELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             EEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             EEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            888887765432 23345677888888888876554433   345788888888877666555   45777777777655


Q ss_pred             c
Q 016710          341 V  341 (384)
Q Consensus       341 ~  341 (384)
                      .
T Consensus       312 ~  312 (328)
T 4fcg_A          312 L  312 (328)
T ss_dssp             G
T ss_pred             H
Confidence            3

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=2.5e-15  Score=139.34  Aligned_cols=220  Identities=13%  Similarity=0.079  Sum_probs=163.5

Q ss_pred             HHHHHHHHhC-CCcEEEEEeCCCCCcccCccccCC--CCccEEEecCeeec--CCCccCCCCCCeEEeeeeecChHHHHH
Q 016710          117 DQCIFYALGC-NVKELSLELLGNPRFNLPEIILCS--NSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQS  191 (384)
Q Consensus       117 ~~~l~~~~~~-~l~~L~l~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~  191 (384)
                      ..|-..+..+ ..+.+++......    +..+...  ++++.|++.++.+.  .+....+++|++|+++++.+++..+..
T Consensus        37 ~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~  112 (336)
T 2ast_B           37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG  112 (336)
T ss_dssp             HHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred             HHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence            3565544333 4677776432211    2333344  88999999998776  334447999999999999988877888


Q ss_pred             HHcCCCCccEEEeeeCCCCce--eecCCCCCCceEEeccccccc-----eeeecCCceeEEEEeCc-cccc--ceecccc
Q 016710          192 LLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAEELQ-----RLCIIAQDVQEVSIQGP-LPFQ--CKFNLAS  261 (384)
Q Consensus       192 l~~~~p~Le~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~~l~-----~~~~~~p~L~~L~l~~~-~~~~--~~~~~~~  261 (384)
                      .+..||+|++|++.+|.....  ..+..+++|+.|++++|..+.     .....+|+|++|+++++ ....  ....+..
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  192 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  192 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence            899999999999999853321  134568999999999995333     33346899999999988 4322  2334667


Q ss_pred             Cc-cCcEEEeecc--ccchHHHHHHhccCCCcceEeecccccccc----cccCCCcccEEecccccccee----ecccCC
Q 016710          262 CK-FLKYLRFALT--HIKDEWLCNQISKFPLLESLLIAGCDDLKS----INISSRSLKLLEIYDCLRLVE----VKIAAS  330 (384)
Q Consensus       262 ~~-~L~~L~L~~~--~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~----~~~~~~~L~~L~l~~c~~l~~----~~~~~~  330 (384)
                      ++ +|++|+++++  .+++..+...+..+++|+.|++++|..++.    ....+++|++|++.+|..+..    ....++
T Consensus       193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~  272 (336)
T 2ast_B          193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  272 (336)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence            89 9999999998  677777888888999999999999985432    223459999999999875542    246799


Q ss_pred             CCceeEEecc
Q 016710          331 SLSIFKYSGD  340 (384)
Q Consensus       331 ~L~~L~l~~~  340 (384)
                      +|++|+++++
T Consensus       273 ~L~~L~l~~~  282 (336)
T 2ast_B          273 TLKTLQVFGI  282 (336)
T ss_dssp             TCCEEECTTS
T ss_pred             CCCEEeccCc
Confidence            9999999998

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.51  E-value=6.9e-14  Score=129.43  Aligned_cols=190  Identities=21%  Similarity=0.231  Sum_probs=145.8

Q ss_pred             CCCccEEEecCeeec-CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-ecCCCCCCceEEe
Q 016710          150 SNSIEILTLAGLKLE-SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-ELSGLTKLNKFEV  226 (384)
Q Consensus       150 ~~~L~~L~L~~~~l~-~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~-~i~~~~~L~~L~l  226 (384)
                      .++++.|+++++.+. .+. ...+++|++|+|+++.+.  .+...+..+++|+.|++.+|...... .+..+++|+.|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            478999999998776 343 336999999999999874  22233567999999999998644211 3456789999999


Q ss_pred             ccccccceee------------ecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEe
Q 016710          227 CDAEELQRLC------------IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL  294 (384)
Q Consensus       227 ~~~~~l~~~~------------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~  294 (384)
                      ++|.....+.            ...++|+.|+++++.....+..+..+++|++|+++++.++.  +...+..+++|+.|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEE
Confidence            9986333322            13889999999998755555567889999999999998764  333477899999999


Q ss_pred             ecccccccccc---cCCCcccEEeccccccceeec---ccCCCCceeEEeccccc
Q 016710          295 IAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVIS  343 (384)
Q Consensus       295 l~~c~~l~~~~---~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~  343 (384)
                      +++|.....+.   ..+++|++|++++|.....++   ..+++|++|++++|+..
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            99987655443   346899999999987666554   57999999999998763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.46  E-value=3.8e-13  Score=125.16  Aligned_cols=207  Identities=17%  Similarity=0.113  Sum_probs=128.9

Q ss_pred             hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710          125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  202 (384)
Q Consensus       125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  202 (384)
                      .+++++|++..+.  ...++. +..+++|++|++++|...  .+....+++|+.|+++++.+.....   +..+++|+.|
T Consensus       109 l~~L~~L~l~~n~--i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L  182 (347)
T 4fmz_A          109 LTNLRELYLNEDN--ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSL  182 (347)
T ss_dssp             CTTCSEEECTTSC--CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEE
T ss_pred             CCcCCEEECcCCc--ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEE
Confidence            3688888885433  334444 567888999999887432  2233468888888888887722111   5678888888


Q ss_pred             EeeeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHH
Q 016710          203 SLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWL  280 (384)
Q Consensus       203 ~L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  280 (384)
                      ++.+|.......+..+++|+.|.+.++.  .... ...+++|++|+++++....... +..+++|+.|+++++.++.-  
T Consensus       183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--  258 (347)
T 4fmz_A          183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--  258 (347)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--
T ss_pred             EccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--
Confidence            8888754432234556778888877765  1111 2356777777777765333222 56677777777777765542  


Q ss_pred             HHHhccCCCcceEeeccccccccc--ccCCCcccEEeccccccce---eecccCCCCceeEEeccccc
Q 016710          281 CNQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       281 ~~l~~~~p~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~~~~~  343 (384)
                       ..+..+++|+.|++++|. +..+  ...+++|++|++++|.--.   .....+++|++|++++|+++
T Consensus       259 -~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          259 -NAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             -GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             -hhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence             345667777777777764 2221  2345677777777663221   22245777777777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.46  E-value=6.9e-13  Score=123.44  Aligned_cols=188  Identities=14%  Similarity=0.092  Sum_probs=101.5

Q ss_pred             ccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceE
Q 016710          147 ILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKF  224 (384)
Q Consensus       147 l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L  224 (384)
                      +..+++|++|+++++.+. .+....+++|++|+++++.. ....   .+..++.|+.|++.+|.......+..+++|+.|
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  182 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL  182 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             HcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchhhccCCCCCEE
Confidence            344555555555554443 11222455555555555532 1100   034455555555555543322223445566666


Q ss_pred             Eecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc
Q 016710          225 EVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK  302 (384)
Q Consensus       225 ~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~  302 (384)
                      ++++|.  .+.. ....++|+.+.+.++....... +..+++|+.|+++++.++....   +..+++|+.|+++++....
T Consensus       183 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          183 SLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             ECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC
T ss_pred             EccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCC
Confidence            666654  1111 1245566666666554222211 5567788888887777654321   5677888888887764221


Q ss_pred             -ccccCCCcccEEecccccccee--ecccCCCCceeEEeccccc
Q 016710          303 -SINISSRSLKLLEIYDCLRLVE--VKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       303 -~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~L~~L~l~~~~~~  343 (384)
                       .....+++|++|+++++ .+..  ....+++|++|++++|.+.
T Consensus       258 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          258 INAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             CGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             ChhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCC
Confidence             11234578888888866 3332  2356888888888888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.42  E-value=3.1e-13  Score=134.91  Aligned_cols=200  Identities=18%  Similarity=0.148  Sum_probs=125.4

Q ss_pred             cCccccCCCCccEEEecCeeecCC---C-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeee----------CC
Q 016710          143 LPEIILCSNSIEILTLAGLKLESP---R-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQL----------CP  208 (384)
Q Consensus       143 lp~~l~~~~~L~~L~L~~~~l~~~---~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~----------c~  208 (384)
                      +|..+..+++|++|++++|.+...   . ...+++|++|++. ..+.+..+..+...|++|++|++.+          |.
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~  363 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG  363 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred             HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence            444444567777777777664311   1 1357777777777 3345566666667777788888874          54


Q ss_pred             CCceee----cCCCCCCceEEeccccccc-----eeeecCCceeEEEEeCc----cccc------ceeccccCccCcEEE
Q 016710          209 GLKNLE----LSGLTKLNKFEVCDAEELQ-----RLCIIAQDVQEVSIQGP----LPFQ------CKFNLASCKFLKYLR  269 (384)
Q Consensus       209 ~~~~~~----i~~~~~L~~L~l~~~~~l~-----~~~~~~p~L~~L~l~~~----~~~~------~~~~~~~~~~L~~L~  269 (384)
                      .+....    ...+++|+.|.+. |..+.     .+...+|+|+.|++.++    ....      ....+..+++|+.|+
T Consensus       364 ~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~  442 (592)
T 3ogk_B          364 LVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA  442 (592)
T ss_dssp             CCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             ccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence            443211    1236788888873 33222     22224778888888632    1111      111245588888888


Q ss_pred             eeccc--cchHHHHHHhccCCCcceEeecccccc----cccccCCCcccEEeccccccce-----eecccCCCCceeEEe
Q 016710          270 FALTH--IKDEWLCNQISKFPLLESLLIAGCDDL----KSINISSRSLKLLEIYDCLRLV-----EVKIAASSLSIFKYS  338 (384)
Q Consensus       270 L~~~~--~~~~~~~~l~~~~p~L~~L~l~~c~~l----~~~~~~~~~L~~L~l~~c~~l~-----~~~~~~~~L~~L~l~  338 (384)
                      ++.+.  +++..+..+...+++|+.|++++|..-    ..+...+++|++|+|++|. +.     .+...+++|++|+++
T Consensus       443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls  521 (592)
T 3ogk_B          443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQ  521 (592)
T ss_dssp             EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEE
T ss_pred             EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECc
Confidence            86543  677777777777888999988887521    2234567889999998886 33     233568899999999


Q ss_pred             ccccccc
Q 016710          339 GDVISFQ  345 (384)
Q Consensus       339 ~~~~~~~  345 (384)
                      +|.++.+
T Consensus       522 ~n~it~~  528 (592)
T 3ogk_B          522 GYRASMT  528 (592)
T ss_dssp             SCBCCTT
T ss_pred             CCcCCHH
Confidence            8887544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.40  E-value=9e-13  Score=132.01  Aligned_cols=214  Identities=15%  Similarity=0.096  Sum_probs=112.1

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  202 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  202 (384)
                      +++++|++..+  ....+|..+..+++|++|+++++.+.  .+ ....+++|++|+++++.+........+..+++|+.|
T Consensus       278 ~~L~~L~l~~n--~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          278 SGLQELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TTCSEEECTTS--CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             cCCCEEeccCC--ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            46666666432  23466666666777777777776554  12 222567777777776654211111224456777777


Q ss_pred             EeeeCCCCcee----ecCCCCCCceEEeccccccc---eeeecCCceeEEEEeCcccccc--eeccccCccCcEEEeecc
Q 016710          203 SLQLCPGLKNL----ELSGLTKLNKFEVCDAEELQ---RLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLRFALT  273 (384)
Q Consensus       203 ~L~~c~~~~~~----~i~~~~~L~~L~l~~~~~l~---~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~  273 (384)
                      ++.++......    .+..+++|+.|+++++.-..   .....+++|++|+++++.....  ...+..+++|+.|+++++
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            77766543222    23456677777777664111   1111356677777666542211  112445666666666666


Q ss_pred             ccchHHHHHHhccCCCcceEeeccccccc------ccccCCCcccEEecccccccee---ecccCCCCceeEEecccc
Q 016710          274 HIKDEWLCNQISKFPLLESLLIAGCDDLK------SINISSRSLKLLEIYDCLRLVE---VKIAASSLSIFKYSGDVI  342 (384)
Q Consensus       274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~------~~~~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~~~~  342 (384)
                      .++.. ....+..+++|+.|+++++....      .....+++|++|+++++.-...   ....+++|++|++++|.+
T Consensus       436 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          436 LLDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             CCBTT-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ccCCc-CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence            54432 12334556666666666654221      1122345666666665522111   123456666666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.40  E-value=2.3e-12  Score=118.09  Aligned_cols=187  Identities=18%  Similarity=0.101  Sum_probs=98.8

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      +++++|++..+.  ...++ .+..+++|++|++++|.+. .+....+++|++|+++++.+..-.   -+..+++|+.|++
T Consensus        41 ~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCEEEC
Confidence            577777764332  33344 3556777777777777655 222335777777777777762211   2556777777777


Q ss_pred             eeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHh
Q 016710          205 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQI  284 (384)
Q Consensus       205 ~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  284 (384)
                      .+|.......+..+++|+.|+++++.                     ..... .+..+++|+.|+++++.+++-.  . +
T Consensus       115 ~~n~l~~~~~l~~l~~L~~L~l~~n~---------------------l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~-l  169 (308)
T 1h6u_A          115 TSTQITDVTPLAGLSNLQVLYLDLNQ---------------------ITNIS-PLAGLTNLQYLSIGNAQVSDLT--P-L  169 (308)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSC---------------------CCCCG-GGGGCTTCCEEECCSSCCCCCG--G-G
T ss_pred             CCCCCCCchhhcCCCCCCEEECCCCc---------------------cCcCc-cccCCCCccEEEccCCcCCCCh--h-h
Confidence            76643322234455566666666553                     11111 1344555666666555544311  1 4


Q ss_pred             ccCCCcceEeeccccccccc--ccCCCcccEEeccccccce-eecccCCCCceeEEecccccc
Q 016710          285 SKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLV-EVKIAASSLSIFKYSGDVISF  344 (384)
Q Consensus       285 ~~~p~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~l~-~~~~~~~~L~~L~l~~~~~~~  344 (384)
                      ..+++|+.|+++++.. ..+  ...+++|++|+++++.--. .-...+++|+.|++++|+++.
T Consensus       170 ~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred             cCCCCCCEEECCCCcc-CcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence            4556666666655431 111  1234566666665442111 112456666666666666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.40  E-value=3.8e-12  Score=118.80  Aligned_cols=170  Identities=18%  Similarity=0.080  Sum_probs=121.9

Q ss_pred             CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      +++++|++...  ....++. .+..+++|++|+++++.+.  .+. ...+++|++|+++++.+..-. ...+..+++|+.
T Consensus        52 ~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNN--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSE
T ss_pred             ccCcEEECCCC--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCE
Confidence            57888887543  3445555 5667999999999998766  233 336899999999999884321 233677999999


Q ss_pred             EEeeeCCCCcee---ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCcccccc-eeccccCccCcEEEeecc
Q 016710          202 LSLQLCPGLKNL---ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALT  273 (384)
Q Consensus       202 L~L~~c~~~~~~---~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~  273 (384)
                      |++.++......   .+..+++|+.|+++++..+..+.    ...++|+.|+++++..... +..+..+++|++|++.++
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            999988544221   34568899999999985333332    2568999999988764332 335677899999999998


Q ss_pred             ccchHHHHHHhccCCCcceEeecccc
Q 016710          274 HIKDEWLCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       274 ~~~~~~~~~l~~~~p~L~~L~l~~c~  299 (384)
                      .+... ....+..+++|+.|+++++.
T Consensus       209 ~l~~~-~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          209 QHILL-LEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             CSTTH-HHHHHHHTTTEEEEEEESCB
T ss_pred             ccccc-hhhhhhhcccccEEECCCCc
Confidence            87532 23445568999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.38  E-value=2.7e-12  Score=123.94  Aligned_cols=211  Identities=14%  Similarity=0.038  Sum_probs=149.8

Q ss_pred             CCCcEEEEEeCCCCCccc-CccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      .+++.|+|....  ...+ +..+..+++|++|+|+++.+.  .+.. ..+++|++|+|+++.+..-. ...+..+++|+.
T Consensus        75 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENN--IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCE
T ss_pred             CCccEEECcCCc--CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCE
Confidence            578888886433  3334 445667899999999998765  2233 36899999999998873211 122567899999


Q ss_pred             EEeeeCCCCcee--ecCCCCCCceEEeccccccceeee----cCCceeEEEEeCcccccceeccccCccCcEEEeecccc
Q 016710          202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLCI----IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI  275 (384)
Q Consensus       202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  275 (384)
                      |+++++......  .+..+++|+.|++.+|..+..+..    ..++|++|+++++.....+ .+..+++|+.|+++++.+
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence            999988644221  244678999999998875555542    5689999999887644332 467789999999999887


Q ss_pred             chHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccccceee----cccCCCCceeEEecccc
Q 016710          276 KDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV----KIAASSLSIFKYSGDVI  342 (384)
Q Consensus       276 ~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~  342 (384)
                      +... ...+.++++|+.|+++++..-.   .....+++|++|+|+++ .+..+    ...+++|++|++++|+.
T Consensus       231 ~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          231 PEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             SEEC-GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cccC-cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence            6432 3456789999999999876321   12234689999999976 33333    35689999999999975

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.37  E-value=2.1e-12  Score=118.63  Aligned_cols=215  Identities=13%  Similarity=0.108  Sum_probs=114.4

Q ss_pred             CCCcEEEEEeCCCCC-cccCccccCCCCccEEEecC-eeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCcc
Q 016710          126 CNVKELSLELLGNPR-FNLPEIILCSNSIEILTLAG-LKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIE  200 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~-~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  200 (384)
                      .++++|++....... ..+|..+..+++|++|++++ +.+.  .+.. ..+++|++|+++++.+.... ...+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC-CHHHhCCCCCC
Confidence            355666665433211 15666666677777777763 3332  2322 25677777777777652111 11245567777


Q ss_pred             EEEeeeCCCCce--eecCCCCCCceEEecccccccee---eecCC-ceeEEEEeCcccc-cceeccccCccCcEEEeecc
Q 016710          201 YLSLQLCPGLKN--LELSGLTKLNKFEVCDAEELQRL---CIIAQ-DVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALT  273 (384)
Q Consensus       201 ~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~~l~~~---~~~~p-~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~  273 (384)
                      .|++.++.....  ..+..+++|+.|+++++.-...+   ....+ +|+.|+++++... ..+..+..+. |+.|+++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            777766542211  12334567777777766411111   11233 6777777665422 1222344444 777777776


Q ss_pred             ccchHHHHHHhccCCCcceEeeccccccccc--ccCCCcccEEeccccccceee---cccCCCCceeEEeccccc
Q 016710          274 HIKDEWLCNQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~~  343 (384)
                      .++.. ....+..+++|+.|+++++......  ....++|++|+++++.-...+   ...+++|++|++++|.++
T Consensus       208 ~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          208 MLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            65432 2344566777777777775422111  223467777777765422122   245677777777777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.37  E-value=6.3e-13  Score=133.12  Aligned_cols=174  Identities=18%  Similarity=0.106  Sum_probs=102.0

Q ss_pred             CCCCCCeEEeeeeecChH-HHHHHHcCCCCccEEEeeeCCCCce-eecCCCCCCceEEecccc--ccc--eeeecCCcee
Q 016710          170 KLSSLTKLFLMRVDATDL-VLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDAE--ELQ--RLCIIAQDVQ  243 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~~~~-~l~~l~~~~p~Le~L~L~~c~~~~~-~~i~~~~~L~~L~l~~~~--~l~--~~~~~~p~L~  243 (384)
                      .+++|+.|+++++.+... .....+..++.|+.|++.+|..... ..+..+++|+.|++.++.  ...  ......++|+
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  427 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL  427 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence            455555555555544111 0112244566666666666542211 123345677777777664  111  1112456777


Q ss_pred             EEEEeCccccc-ceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccc---cccCCCcccEEecccc
Q 016710          244 EVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDC  319 (384)
Q Consensus       244 ~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c  319 (384)
                      .|+++++.... .+..+..+++|+.|++.++.+++..+...+..+++|+.|+++++.....   ....+++|++|+++++
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence            77777665322 2223566788888888888766533344567788888888888753322   1234588999999876


Q ss_pred             ccce---eecccCCCCceeEEeccccc
Q 016710          320 LRLV---EVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       320 ~~l~---~~~~~~~~L~~L~l~~~~~~  343 (384)
                      .-..   .....+++|++|++++|.++
T Consensus       508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          508 NLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             cCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            4222   22356888999999999875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.37  E-value=1.4e-12  Score=130.17  Aligned_cols=107  Identities=19%  Similarity=0.126  Sum_probs=70.6

Q ss_pred             ccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCC-CCCcccCccccCCCCccEEEecCeeecCCC------
Q 016710           95 IRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLG-NPRFNLPEIILCSNSIEILTLAGLKLESPR------  167 (384)
Q Consensus        95 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~------  167 (384)
                      ..++.+.++...    ........ +.. ..+++++|++..+. .....++.....|++|++|++++|.+....      
T Consensus       105 ~~L~~L~L~~~~----~~~~~~~~-l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          105 TWLEEIRLKRMV----VTDDCLEL-IAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             TTCCEEEEESCB----CCHHHHHH-HHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred             CCCCeEEeeCcE----EcHHHHHH-HHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence            478888887432    11111111 111 24799999997652 222335555557999999999988754211      


Q ss_pred             -ccCCCCCCeEEeeeee--cChHHHHHHHcCCCCccEEEeeeC
Q 016710          168 -SVKLSSLTKLFLMRVD--ATDLVLQSLLIGCPLIEYLSLQLC  207 (384)
Q Consensus       168 -~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~L~~c  207 (384)
                       ...+++|++|+++++.  ++...+..+...||+|+.|++.+|
T Consensus       179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence             1157899999999886  477788888888899999998877

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.36  E-value=3.4e-12  Score=122.89  Aligned_cols=211  Identities=13%  Similarity=0.059  Sum_probs=140.9

Q ss_pred             CCCcEEEEEeCCCCCcccC-ccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      .+++.|+|....  ...++ ..+..+++|++|+|+++.+.  .+.. ..+++|++|+|+++.+..-. ...+..+++|+.
T Consensus        64 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQ--IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCC--CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred             CCCcEEEccCCc--CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence            567777775432  33333 45567888999999887665  2222 26888999999888773211 122567888999


Q ss_pred             EEeeeCCCCcee--ecCCCCCCceEEeccccccceeee----cCCceeEEEEeCcccccceeccccCccCcEEEeecccc
Q 016710          202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLCI----IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI  275 (384)
Q Consensus       202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  275 (384)
                      |++.++......  .+..+++|+.|++.++..+..+..    ..++|++|+++++.....+ .+..+++|+.|+|++|.+
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCcc
Confidence            998887543221  244678899999888765444432    4678888988887644333 366788999999988876


Q ss_pred             chHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccccceee----cccCCCCceeEEecccc
Q 016710          276 KDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV----KIAASSLSIFKYSGDVI  342 (384)
Q Consensus       276 ~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~  342 (384)
                      +... ...+.++++|+.|+++++..-.   .....+++|++|+|+++ .+..+    ...+++|++|++++|+.
T Consensus       220 ~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          220 SAIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEEC-TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CccC-hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence            6421 3456778899999998875221   12234588999999865 23322    35688999999998875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.36  E-value=1.1e-11  Score=120.23  Aligned_cols=102  Identities=11%  Similarity=0.047  Sum_probs=53.1

Q ss_pred             CCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc-ccccCCCcccEEecc
Q 016710          239 AQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK-SINISSRSLKLLEIY  317 (384)
Q Consensus       239 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~-~~~~~~~~L~~L~l~  317 (384)
                      +++|+.|+++++...... .+..+++|+.|+++++.+++...   +..+++|+.|++++|.... .....+++|+.|++.
T Consensus       286 l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  361 (466)
T 1o6v_A          286 LTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAG  361 (466)
T ss_dssp             CTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             CCccCeEEcCCCcccCch-hhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCchhhccCCCCCEEeCC
Confidence            345555555444322211 14455666666666655443221   3456666666666654111 112234677777777


Q ss_pred             ccccceee-cccCCCCceeEEecccccc
Q 016710          318 DCLRLVEV-KIAASSLSIFKYSGDVISF  344 (384)
Q Consensus       318 ~c~~l~~~-~~~~~~L~~L~l~~~~~~~  344 (384)
                      ++.-.... ...+++|+.|++++|.++.
T Consensus       362 ~n~l~~~~~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          362 HNQISDLTPLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             SSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred             CCccCccchhhcCCCCCEEeccCCcccC
Confidence            65322211 3567888888888876644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.36  E-value=7e-12  Score=121.56  Aligned_cols=206  Identities=18%  Similarity=0.111  Sum_probs=150.7

Q ss_pred             hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      .+.++++++....   ..++ .+..+++|++|+++++.+. .+....+++|++|+++++.+.....   +..+++|+.|+
T Consensus       155 l~~L~~L~l~~~~---~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~  227 (466)
T 1o6v_A          155 LTSLQQLSFGNQV---TDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELS  227 (466)
T ss_dssp             CTTCSEEEEEESC---CCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEE
T ss_pred             CCcccEeecCCcc---cCch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEE
Confidence            3689999986422   2222 2667999999999998776 3334479999999999998832211   56799999999


Q ss_pred             eeeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHH
Q 016710          204 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC  281 (384)
Q Consensus       204 L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  281 (384)
                      +.+|.......+..+++|+.|+++++.  .... ...+++|+.|+++++....... +..+++|+.|++.++.+.+..  
T Consensus       228 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~--  303 (466)
T 1o6v_A          228 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--  303 (466)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--
T ss_pred             CCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch--
Confidence            999864433345567899999999986  2222 2367899999999876443332 678899999999998876532  


Q ss_pred             HHhccCCCcceEeeccccccccc-ccCCCcccEEeccccccceee--cccCCCCceeEEeccccc
Q 016710          282 NQISKFPLLESLLIAGCDDLKSI-NISSRSLKLLEIYDCLRLVEV--KIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       282 ~l~~~~p~L~~L~l~~c~~l~~~-~~~~~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~~~~~  343 (384)
                       .+..+++|+.|+++++...... ...+++|++|++.++. +..+  ...+++|+.|++++|.++
T Consensus       304 -~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          304 -PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             -GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             -hhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCccC
Confidence             2678999999999998632211 2356899999999873 3322  367999999999999774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.35  E-value=9.5e-13  Score=120.36  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=15.7

Q ss_pred             cCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          261 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       261 ~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      .+++|++|++.++.++.......+..+++|+.|+++++
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            34444444444444332112223334444444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.35  E-value=8.4e-12  Score=120.65  Aligned_cols=199  Identities=15%  Similarity=0.083  Sum_probs=112.9

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEee
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ  205 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~  205 (384)
                      +++++|++..+.  ...+|  +..+++|++|+++++.+.......+++|++|+++++.+..-.    +..+++|+.|++.
T Consensus        64 ~~L~~L~Ls~n~--l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~  135 (457)
T 3bz5_A           64 TGLTKLICTSNN--ITTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCA  135 (457)
T ss_dssp             TTCSEEECCSSC--CSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECT
T ss_pred             CCCCEEEccCCc--CCeEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECC
Confidence            566666665432  22233  445666777777666555222335667777777776663211    4566677777776


Q ss_pred             eCCCCceeecCCCCCCceEEeccccccceeee-cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHh
Q 016710          206 LCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQI  284 (384)
Q Consensus       206 ~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  284 (384)
                      ++.-. .+.+..+++|+.|++.++..+..+.+ ..++|+.|+++++.....+  +..+++|+.|++.++.++..    -+
T Consensus       136 ~N~l~-~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l  208 (457)
T 3bz5_A          136 RNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DL  208 (457)
T ss_dssp             TSCCS-CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CC
T ss_pred             CCccc-eeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee----cc
Confidence            65432 23455666777777777653333332 4567777777766543332  56677777777777766543    15


Q ss_pred             ccCCCcceEeeccccccccc-ccCCCcccEEeccccccceeecccCCCCceeEEecc
Q 016710          285 SKFPLLESLLIAGCDDLKSI-NISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGD  340 (384)
Q Consensus       285 ~~~p~L~~L~l~~c~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~  340 (384)
                      ..+++|+.|+++++. +..+ ...+++|++|+++++.--......+++|+.|+++++
T Consensus       209 ~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n  264 (457)
T 3bz5_A          209 NQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT  264 (457)
T ss_dssp             TTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC
T ss_pred             ccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC
Confidence            567778888877764 2222 224577888877754211111234555555544443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.35  E-value=1.6e-12  Score=119.31  Aligned_cols=214  Identities=9%  Similarity=0.022  Sum_probs=151.2

Q ss_pred             hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      .+.+++|++..+..-...+|..+..+++|++|+++++.+.  .+.. ..+++|++|+++++.+... +...+..+++|+.
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence            3799999997322223467888888999999999998775  4443 3799999999999987321 1123567999999


Q ss_pred             EEeeeCCCCcee--ecCCCC-CCceEEecccccccee--eecCCceeEEEEeCcccc-cceeccccCccCcEEEeecccc
Q 016710          202 LSLQLCPGLKNL--ELSGLT-KLNKFEVCDAEELQRL--CIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHI  275 (384)
Q Consensus       202 L~L~~c~~~~~~--~i~~~~-~L~~L~l~~~~~l~~~--~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~  275 (384)
                      |++.++......  .+..++ +|+.|+++++.-...+  .+...+|+.|+++++... ..+..+..+++|+.|+++++.+
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            999998654222  234555 9999999988521111  122224999999887633 2334567899999999999887


Q ss_pred             chHHHHHHhccCCCcceEeecccccc---cccccCCCcccEEeccccccceeec--ccCCCCceeEEeccc
Q 016710          276 KDEWLCNQISKFPLLESLLIAGCDDL---KSINISSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSGDV  341 (384)
Q Consensus       276 ~~~~~~~l~~~~p~L~~L~l~~c~~l---~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~  341 (384)
                      +..  ...+..+++|+.|+++++...   .......++|++|+++++.--..++  ..+++|+.|++.+|+
T Consensus       234 ~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          234 AFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             eee--cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            632  222577899999999998633   2223456899999999774332343  558889999999987

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.35  E-value=2.1e-12  Score=132.92  Aligned_cols=168  Identities=17%  Similarity=0.138  Sum_probs=99.7

Q ss_pred             CCCcEEEEEeCCCCCcccCc--cccCCCCccEEEecCeeec--CCCc--cCCCCCCeEEeeeeecChHHH--HHHHcCCC
Q 016710          126 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE--SPRS--VKLSSLTKLFLMRVDATDLVL--QSLLIGCP  197 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~--~~~~--~~~~~L~~L~L~~~~~~~~~l--~~l~~~~p  197 (384)
                      +++++|+++.+.. ...+|.  .+..+++|++|++++|.+.  .+..  ..+++|++|+++++.+.....  ...+..++
T Consensus       100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            5778887764322 223555  6777888888888887665  2222  368888888888888732222  22367788


Q ss_pred             CccEEEeeeCCCCceeecCCCCCCceEEeccccc---cceeeecCCceeEEEEeCcccc-cceeccccCccCcEEEeecc
Q 016710          198 LIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALT  273 (384)
Q Consensus       198 ~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~---l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~  273 (384)
                      +|+.|++.+|..........+++|+.|+++++.-   ++. ....++|++|+++++... ..+..+..+++|++|++.++
T Consensus       179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  257 (768)
T 3rgz_A          179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN  257 (768)
T ss_dssp             TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred             CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence            8888888877544333445667888888877751   112 225667777777766532 22233555666666666665


Q ss_pred             ccchHHHHHHhccCCCcceEeeccc
Q 016710          274 HIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       274 ~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      .+.... ..  ..+++|++|+++++
T Consensus       258 ~l~~~~-~~--~~l~~L~~L~L~~n  279 (768)
T 3rgz_A          258 QFVGPI-PP--LPLKSLQYLSLAEN  279 (768)
T ss_dssp             CCEESC-CC--CCCTTCCEEECCSS
T ss_pred             cccCcc-Cc--cccCCCCEEECcCC
Confidence            543211 00  13445555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.34  E-value=5.8e-12  Score=122.44  Aligned_cols=194  Identities=14%  Similarity=0.113  Sum_probs=106.5

Q ss_pred             ccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce--eecCCCCCC
Q 016710          147 ILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKL  221 (384)
Q Consensus       147 l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~--~~i~~~~~L  221 (384)
                      +..+++|++|+++++.+.  .+ ....+++|+.|+++++.+.... ...+..+++|+.|++.++.....  ..+..+++|
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L  202 (477)
T 2id5_A          124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL  202 (477)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred             ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence            344555556655554433  11 1224566666666666552211 12245566666666666543321  123345677


Q ss_pred             ceEEeccccccceee---ecCCceeEEEEeCcccccce-eccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecc
Q 016710          222 NKFEVCDAEELQRLC---IIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAG  297 (384)
Q Consensus       222 ~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~  297 (384)
                      +.|+++++..+..+.   ...++|++|+++++.....+ ..+..+++|+.|+++++.++... ...+..+++|+.|++++
T Consensus       203 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~  281 (477)
T 2id5_A          203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLVG  281 (477)
T ss_dssp             CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-TTSCTTCTTCCEEECCS
T ss_pred             ceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-hhhccccccCCEEECCC
Confidence            777777665333322   22346777777766533322 23556777888887777655321 23345677788888877


Q ss_pred             ccccc---ccccCCCcccEEeccccc--cce-eecccCCCCceeEEecccc
Q 016710          298 CDDLK---SINISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVI  342 (384)
Q Consensus       298 c~~l~---~~~~~~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L~l~~~~~  342 (384)
                      +....   .....+++|++|+++++.  .+. .....+++|++|++++|++
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            64221   122345778888887652  121 2234577888888888765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.33  E-value=6e-12  Score=113.81  Aligned_cols=199  Identities=16%  Similarity=0.102  Sum_probs=131.9

Q ss_pred             CcccCccccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee---
Q 016710          140 RFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL---  213 (384)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~---  213 (384)
                      ...+|..+  .++|++|+++++.+.  .+. ...+++|++|+++++.+.... ...+..+++|+.|++.++..+..+   
T Consensus        23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence            44455433  467888888887665  222 236888888888888763221 122556888888888887644333   


Q ss_pred             ecCCCCCCceEEecccc--cc-ceeeecCCceeEEEEeCccccccee-ccccCccCcEEEeeccccchHHHHHHhccCCC
Q 016710          214 ELSGLTKLNKFEVCDAE--EL-QRLCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPL  289 (384)
Q Consensus       214 ~i~~~~~L~~L~l~~~~--~l-~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~  289 (384)
                      .+..+++|+.|++.++.  .+ .......++|++|+++++....... .+..+++|+.|+++++.++.-. ...+..+++
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~  178 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHS  178 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTT
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccc
Confidence            34457788888888875  11 1112246788999888876443332 2667899999999988765321 234567899


Q ss_pred             cceEeecccccccc---cccCCCcccEEecccccccee----ecccCCCCceeEEeccccc
Q 016710          290 LESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVE----VKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       290 L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~----~~~~~~~L~~L~l~~~~~~  343 (384)
                      |+.|+++++.....   ....+++|++|++.++. +..    ....+++|++|++++|++.
T Consensus       179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCcc
Confidence            99999998763221   22345899999998763 222    2356899999999999764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.33  E-value=2.8e-12  Score=123.76  Aligned_cols=83  Identities=12%  Similarity=0.026  Sum_probs=50.2

Q ss_pred             cccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccccceee----cccCCC
Q 016710          259 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV----KIAASS  331 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~  331 (384)
                      +..+++|+.|++.++.++... ...+..+++|+.|+++++....   .....+++|++|+++++. +..+    ...+++
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~  372 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKID-DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPN  372 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred             cccCCCCCEEECCCCcccccC-hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccChhhcccccc
Confidence            455677777777777655321 2234567777777777764221   112345778888887653 2222    245778


Q ss_pred             CceeEEeccccc
Q 016710          332 LSIFKYSGDVIS  343 (384)
Q Consensus       332 L~~L~l~~~~~~  343 (384)
                      |++|++++|.+.
T Consensus       373 L~~L~L~~N~l~  384 (455)
T 3v47_A          373 LKELALDTNQLK  384 (455)
T ss_dssp             CCEEECCSSCCS
T ss_pred             ccEEECCCCccc
Confidence            888888887664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.33  E-value=3.6e-12  Score=126.51  Aligned_cols=211  Identities=19%  Similarity=0.158  Sum_probs=130.2

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEee
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ  205 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~  205 (384)
                      ++++++++..+.  ...+|..+..+ +|++|++++|.+..-....+++|+.|++.++.......   ...+|+|+.|++.
T Consensus       282 ~~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~  355 (570)
T 2z63_A          282 TNVSSFSLVSVT--IERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLS  355 (570)
T ss_dssp             TTCSEEEEESCE--ECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECC
T ss_pred             CcccEEEecCcc--chhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc---cccCCCCCEEeCc
Confidence            677777776433  33567766667 88888888876652222467888888888776621110   1567888888888


Q ss_pred             eCCCCcee----ecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccc--eeccccCccCcEEEeeccccch
Q 016710          206 LCPGLKNL----ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLRFALTHIKD  277 (384)
Q Consensus       206 ~c~~~~~~----~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~  277 (384)
                      +|......    .+..+++|+.|+++++.  .+......+++|++|++.++.....  ...+..+++|++|+++++.+..
T Consensus       356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred             CCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence            77543221    23356788888888775  2222233677888888877653221  1235667788888887776543


Q ss_pred             HHHHHHhccCCCcceEeecccccc----cccccCCCcccEEecccccccee---ecccCCCCceeEEeccccc
Q 016710          278 EWLCNQISKFPLLESLLIAGCDDL----KSINISSRSLKLLEIYDCLRLVE---VKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       278 ~~~~~l~~~~p~L~~L~l~~c~~l----~~~~~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~~~~~  343 (384)
                      . ....+..+++|+.|++++|...    ......+++|++|+++++.--..   ....+++|++|++++|.++
T Consensus       436 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          436 A-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             C-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             c-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence            2 2334566778888888877532    12233457788888876632221   1245778888888877653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.33  E-value=1.2e-11  Score=117.12  Aligned_cols=211  Identities=15%  Similarity=0.152  Sum_probs=113.7

Q ss_pred             CCCcEEEEEeCCCCCcccC-ccccCCCCccEEEecCeeec-CCCc--cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE-SPRS--VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~-~~~~--~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      +++++|++..+.  ...++ ..+..+++|++|+++++.+. .+..  ..+++|++|+++++.+.... ...+..+++|+.
T Consensus        93 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  169 (390)
T 3o6n_A           93 HTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQN  169 (390)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCE
T ss_pred             CCcCEEECCCCC--CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCE
Confidence            566666665332  22333 33455677777777776554 2222  24677777777776652211 112445667777


Q ss_pred             EEeeeCCCCceeecCCCCCCce-------------------EEeccccccceee-ecCCceeEEEEeCcccccceecccc
Q 016710          202 LSLQLCPGLKNLELSGLTKLNK-------------------FEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQCKFNLAS  261 (384)
Q Consensus       202 L~L~~c~~~~~~~i~~~~~L~~-------------------L~l~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~  261 (384)
                      |++.++... ...+..+++|+.                   |+++++. +..+. ...++|+.|+++++..... ..+..
T Consensus       170 L~l~~n~l~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~  246 (390)
T 3o6n_A          170 LQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTDT-AWLLN  246 (390)
T ss_dssp             EECCSSCCS-BCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECCCCSSCCEEECCSSCCCCC-GGGGG
T ss_pred             EECCCCcCC-ccccccccccceeecccccccccCCCCcceEEECCCCe-eeeccccccccccEEECCCCCCccc-HHHcC
Confidence            777665422 122233344444                   4444442 11111 1234666666666543222 23556


Q ss_pred             CccCcEEEeeccccchHHHHHHhccCCCcceEeecccccc--cccccCCCcccEEeccccccceeec---ccCCCCceeE
Q 016710          262 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVK---IAASSLSIFK  336 (384)
Q Consensus       262 ~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~  336 (384)
                      +++|++|+++++.++.. ....+..+++|+.|+++++...  ......+++|++|+++++ .+..++   ..+++|++|+
T Consensus       247 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY  324 (390)
T ss_dssp             CTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred             CCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEE
Confidence            77788888777765542 1234566777888888776421  112234577888888765 233332   3467788888


Q ss_pred             Eecccccc
Q 016710          337 YSGDVISF  344 (384)
Q Consensus       337 l~~~~~~~  344 (384)
                      +++|.+..
T Consensus       325 L~~N~i~~  332 (390)
T 3o6n_A          325 LDHNSIVT  332 (390)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCccce
Confidence            87777643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.33  E-value=1.4e-11  Score=119.15  Aligned_cols=224  Identities=11%  Similarity=0.050  Sum_probs=157.3

Q ss_pred             ccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCCCccCCCCC
Q 016710           95 IRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSL  174 (384)
Q Consensus        95 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~L  174 (384)
                      ..++.+.+.....      ..+    .....+++++|++..+.  ...++  +..+++|++|+++++.+..-....+++|
T Consensus        64 ~~L~~L~Ls~n~l------~~~----~~~~l~~L~~L~Ls~N~--l~~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L  129 (457)
T 3bz5_A           64 TGLTKLICTSNNI------TTL----DLSQNTNLTYLACDSNK--LTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLL  129 (457)
T ss_dssp             TTCSEEECCSSCC------SCC----CCTTCTTCSEEECCSSC--CSCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTC
T ss_pred             CCCCEEEccCCcC------CeE----ccccCCCCCEEECcCCC--Cceee--cCCCCcCCEEECCCCcCCeecCCCCCcC
Confidence            4777877764322      111    11223688999886544  23333  6678999999999987763234478999


Q ss_pred             CeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccccceeee-cCCceeEEEEeCcccc
Q 016710          175 TKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPF  253 (384)
Q Consensus       175 ~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~  253 (384)
                      ++|+++++.+..-.    +..+++|+.|++.+|.....+.+..+++|+.|+++++. +..+.+ ..++|+.|.++++...
T Consensus       130 ~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          130 TYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             CEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCS
T ss_pred             CEEECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCC
Confidence            99999999884321    66899999999999977766677788999999999885 222223 5789999999887644


Q ss_pred             cceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCccc----------EEeccccccce
Q 016710          254 QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLK----------LLEIYDCLRLV  323 (384)
Q Consensus       254 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~----------~L~l~~c~~l~  323 (384)
                      ..  .+..+++|+.|+++++.++.-   . +..+++|+.|+++++.--......+++|+          .|++.++....
T Consensus       205 ~~--~l~~l~~L~~L~Ls~N~l~~i---p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~  278 (457)
T 3bz5_A          205 KL--DLNQNIQLTFLDCSSNKLTEI---D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI  278 (457)
T ss_dssp             CC--CCTTCTTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred             ee--ccccCCCCCEEECcCCccccc---C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence            33  477889999999999987762   2 67889999999998752221122344444          55555555555


Q ss_pred             eec-ccCCCCceeEEeccccc
Q 016710          324 EVK-IAASSLSIFKYSGDVIS  343 (384)
Q Consensus       324 ~~~-~~~~~L~~L~l~~~~~~  343 (384)
                      .++ ..+++|++|++++|...
T Consensus       279 ~~~~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          279 YFQAEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             EEECTTCTTCCCCCCTTCTTC
T ss_pred             cccccccccCCEEECCCCccc
Confidence            444 46899999999998743

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.33  E-value=3.6e-12  Score=131.22  Aligned_cols=193  Identities=15%  Similarity=0.046  Sum_probs=135.5

Q ss_pred             CCCcEEEEEe-CCCCCcccCccccCCCCccEEEecCeeec--CCC---ccCCCCCCeEEeeeeecChHHHHHHHcCCCCc
Q 016710          126 CNVKELSLEL-LGNPRFNLPEIILCSNSIEILTLAGLKLE--SPR---SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLI  199 (384)
Q Consensus       126 ~~l~~L~l~~-~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  199 (384)
                      .+++.|++.. .......+|..+..+++|++|+|+++.+.  .+.   ...+++|++|+++++.+.......+...+++|
T Consensus        74 ~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  153 (768)
T 3rgz_A           74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL  153 (768)
T ss_dssp             TTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred             hccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence            3445555433 23334567788889999999999998775  333   33799999999999987322222233678999


Q ss_pred             cEEEeeeCCCCceee-----cCCCCCCceEEeccccccceee-ecCCceeEEEEeCcccccceeccccCccCcEEEeecc
Q 016710          200 EYLSLQLCPGLKNLE-----LSGLTKLNKFEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALT  273 (384)
Q Consensus       200 e~L~L~~c~~~~~~~-----i~~~~~L~~L~l~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~  273 (384)
                      +.|++++|.......     +..+++|+.|+++++.-..... ..+++|++|+++++........+..+++|++|++.++
T Consensus       154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n  233 (768)
T 3rgz_A          154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN  233 (768)
T ss_dssp             SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS
T ss_pred             CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC
Confidence            999999986543221     5678999999999986222222 3678999999998874433333788999999999999


Q ss_pred             ccchHHHHHHhccCCCcceEeecccccccccc-cCCCcccEEecccc
Q 016710          274 HIKDEWLCNQISKFPLLESLLIAGCDDLKSIN-ISSRSLKLLEIYDC  319 (384)
Q Consensus       274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~c  319 (384)
                      .+++. +...+..+++|+.|++++|.....+. ..+++|++|++.++
T Consensus       234 ~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n  279 (768)
T 3rgz_A          234 KLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAEN  279 (768)
T ss_dssp             CCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSS
T ss_pred             cCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCC
Confidence            88754 45567889999999999986332111 14456666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.32  E-value=2.8e-12  Score=127.26  Aligned_cols=212  Identities=17%  Similarity=0.125  Sum_probs=153.9

Q ss_pred             CCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecC-CCccCCCCCCeEEeeeeecChH-HHHHHHcCCCCccEEEe
Q 016710          127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES-PRSVKLSSLTKLFLMRVDATDL-VLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       127 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~~p~Le~L~L  204 (384)
                      +++++++..+..  ..+|.  ..+++|++|++.++.... .....+++|++|+++++.+... .....+..+++|+.|++
T Consensus       305 ~L~~L~l~~n~~--~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  380 (570)
T 2z63_A          305 GWQHLELVNCKF--GQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL  380 (570)
T ss_dssp             CCSEEEEESCBC--SSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred             CccEEeeccCcc--cccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence            789999876543  35555  468999999999987652 2225799999999999987322 11223567999999999


Q ss_pred             eeCCCCcee-ecCCCCCCceEEeccccc--cc--eeeecCCceeEEEEeCccccc-ceeccccCccCcEEEeeccccchH
Q 016710          205 QLCPGLKNL-ELSGLTKLNKFEVCDAEE--LQ--RLCIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDE  278 (384)
Q Consensus       205 ~~c~~~~~~-~i~~~~~L~~L~l~~~~~--l~--~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~  278 (384)
                      .+|...... .+..+++|+.|++.++.-  ..  .....+++|++|+++++.... .+..+..+++|+.|++.++.+++.
T Consensus       381 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  460 (570)
T 2z63_A          381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  460 (570)
T ss_dssp             CSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence            998644221 256788999999999861  11  122367899999998876332 233467799999999999987644


Q ss_pred             HHHHHhccCCCcceEeecccccccc---cccCCCcccEEecccccccee----ecccCCCCceeEEeccccc
Q 016710          279 WLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVE----VKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       279 ~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~----~~~~~~~L~~L~l~~~~~~  343 (384)
                      .+...+..+++|+.|++++|.....   ....+++|++|+++++. +..    ....+++|++|++++|++.
T Consensus       461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCccc
Confidence            4445678899999999999863322   22356899999999763 332    2357899999999999865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.31  E-value=4.3e-12  Score=127.05  Aligned_cols=125  Identities=15%  Similarity=0.151  Sum_probs=68.9

Q ss_pred             CCCCceEEecccc--ccceeeecCCceeEEEEeCcccccce--eccccCccCcEEEeeccccchHHHHHHhccCCCcceE
Q 016710          218 LTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESL  293 (384)
Q Consensus       218 ~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L  293 (384)
                      +++|+.|+++++.  .+.......++|+.|++.++......  ..+..+++|+.|+++++.++.. ....+..+++|+.|
T Consensus       375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNTL  453 (606)
T ss_dssp             CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEE
T ss_pred             CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc-chhhhcCCCCCCEE
Confidence            4455555555543  11111113455566655554422111  1344566777777766665432 12335567777777


Q ss_pred             eeccccccc----ccccCCCcccEEecccccccee---ecccCCCCceeEEeccccc
Q 016710          294 LIAGCDDLK----SINISSRSLKLLEIYDCLRLVE---VKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       294 ~l~~c~~l~----~~~~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~~~~~  343 (384)
                      +++++....    .....+++|++|+++++.-...   ....+++|++|++++|.++
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  510 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL  510 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence            777765222    1223457888888887632222   2256889999999988763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.31  E-value=1.1e-12  Score=119.84  Aligned_cols=214  Identities=14%  Similarity=0.080  Sum_probs=142.6

Q ss_pred             CCCcEEEEEeCCCCCcccCccc-cCCCCccEEEecCeeecC-----CCccCCCCCCeEEeeeeecChHHHHHHHcCCCCc
Q 016710          126 CNVKELSLELLGNPRFNLPEII-LCSNSIEILTLAGLKLES-----PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLI  199 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~-----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  199 (384)
                      +++++|++..+.  ...+|... ..+++|++|+++++.+..     .....+++|++|+++++.+..  +...+..+++|
T Consensus        28 ~~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred             CCCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence            467777775433  44666653 568889999998876541     122268889999998887621  11125568889


Q ss_pred             cEEEeeeCCCCce---eecCCCCCCceEEecccccc---ceeeecCCceeEEEEeCccccc--ceeccccCccCcEEEee
Q 016710          200 EYLSLQLCPGLKN---LELSGLTKLNKFEVCDAEEL---QRLCIIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFA  271 (384)
Q Consensus       200 e~L~L~~c~~~~~---~~i~~~~~L~~L~l~~~~~l---~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~  271 (384)
                      +.|++.++.....   ..+..+++|+.|+++++.-.   .......++|++|+++++....  .+..+..+++|++|+++
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence            9999887643221   12446789999999888511   1111246889999998876432  34456778999999999


Q ss_pred             ccccchHHHHHHhccCCCcceEeeccccccc--c-cccCCCcccEEecccccccee---ecccC-CCCceeEEecccccc
Q 016710          272 LTHIKDEWLCNQISKFPLLESLLIAGCDDLK--S-INISSRSLKLLEIYDCLRLVE---VKIAA-SSLSIFKYSGDVISF  344 (384)
Q Consensus       272 ~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~--~-~~~~~~~L~~L~l~~c~~l~~---~~~~~-~~L~~L~l~~~~~~~  344 (384)
                      ++.++... ...+..+++|+.|+++++....  . ....+++|++|+++++.-...   ....+ ++|++|++++|++..
T Consensus       184 ~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          184 QCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            98876431 3446778999999999976322  1 223468999999997642221   22345 489999999998643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=6.6e-12  Score=125.60  Aligned_cols=84  Identities=17%  Similarity=0.161  Sum_probs=48.0

Q ss_pred             cccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccc--cccccCCCcccEEeccccccceeec---ccCCCCc
Q 016710          259 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVK---IAASSLS  333 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~  333 (384)
                      +..+++|+.|+++++.++.. ....+..+++|+.|+++++...  ......+++|++|+++++. +..++   ..+++|+
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~  327 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLE  327 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred             hccCCCCCEEECCCCccCCC-CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCC
Confidence            44566777777766665432 1233456677777777765411  1122235677777777653 22222   4477777


Q ss_pred             eeEEecccccc
Q 016710          334 IFKYSGDVISF  344 (384)
Q Consensus       334 ~L~l~~~~~~~  344 (384)
                      +|++++|.+..
T Consensus       328 ~L~L~~N~l~~  338 (597)
T 3oja_B          328 NLYLDHNSIVT  338 (597)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEECCCCCCCC
Confidence            77777776643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.30  E-value=5.8e-12  Score=115.84  Aligned_cols=205  Identities=20%  Similarity=0.133  Sum_probs=135.6

Q ss_pred             CCCcEEEEEeCCCCCcccC-ccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          126 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      +++++|++..+.  ...++ ..+..+++|++|+++++.+. .+....+++|++|+++++.+..      +..++.|+.|+
T Consensus        34 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSC--CCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEE
T ss_pred             CCCCEEECcCCc--cCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEE
Confidence            478888875432  33344 45667889999999887665 2224468899999999887632      22458899999


Q ss_pred             eeeCCCCceeecCCCCCCceEEecccc--ccceee-ecCCceeEEEEeCccccccee-cc-ccCccCcEEEeeccccchH
Q 016710          204 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQCKF-NL-ASCKFLKYLRFALTHIKDE  278 (384)
Q Consensus       204 L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~-~~~p~L~~L~l~~~~~~~~~~-~~-~~~~~L~~L~L~~~~~~~~  278 (384)
                      +.++... ......+++|+.|+++++.  .+.... ...++|+.|+++++....... .+ ..+++|++|+++++.++..
T Consensus       106 l~~n~l~-~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          106 AANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             CCSSCCS-EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCCCccC-CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence            9887543 3344456789999998885  222222 246788888888876433221 22 3578889999888876543


Q ss_pred             HHHHHhccCCCcceEeecccccc--cccccCCCcccEEeccccccceeec---ccCCCCceeEEeccccc
Q 016710          279 WLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVIS  343 (384)
Q Consensus       279 ~~~~l~~~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~  343 (384)
                         .-...+++|+.|+++++..-  ......+++|++|+++++ .+..++   ..+++|+.|++++|++.
T Consensus       185 ---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          185 ---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ---ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             ---ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence               11234788899998887522  112334578888888865 333333   45788888988888765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.30  E-value=2.4e-11  Score=112.18  Aligned_cols=187  Identities=16%  Similarity=0.174  Sum_probs=82.7

Q ss_pred             CCCcEEEEEeCCCCCccc-CccccCCCCccEEEecCeeecCCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      +++++|++..+.  ...+ |..+..+++|++|+++++.+..-....+++|++|+++++.+.... ...+..+++|+.|++
T Consensus        76 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l  152 (330)
T 1xku_A           76 KNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVEL  152 (330)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEEC
T ss_pred             CCCCEEECCCCc--CCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccC-HhHhcCCccccEEEC
Confidence            455555554322  2222 344445566666666655444111112355666666655552211 122445566666666


Q ss_pred             eeCCCCc----eeecCCCCCCceEEeccccccceeee-cCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchH
Q 016710          205 QLCPGLK----NLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDE  278 (384)
Q Consensus       205 ~~c~~~~----~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~  278 (384)
                      .++....    ...+..+++|+.|+++++. +..+.. ..++|++|+++++..... ...+..+++|+.|+++++.++..
T Consensus       153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          153 GTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence            5553321    1112334566666665553 111111 124555555555442221 12344455555565555554321


Q ss_pred             HHHHHhccCCCcceEeeccccccccc---ccCCCcccEEeccc
Q 016710          279 WLCNQISKFPLLESLLIAGCDDLKSI---NISSRSLKLLEIYD  318 (384)
Q Consensus       279 ~~~~l~~~~p~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~  318 (384)
                      . ...+..+++|+.|+++++. +..+   ...+++|++|++.+
T Consensus       232 ~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          232 D-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             C-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCS
T ss_pred             C-hhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCC
Confidence            1 1123445555555555543 1111   12335555555553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.29  E-value=8.9e-12  Score=120.25  Aligned_cols=105  Identities=12%  Similarity=-0.020  Sum_probs=75.0

Q ss_pred             cCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccc---cccCCCcccE
Q 016710          238 IAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKL  313 (384)
Q Consensus       238 ~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~  313 (384)
                      ..++|++|+++++..... +..+..+++|++|+++++.++.. ....+.++++|+.|+++++.....   ....+++|++
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence            356777777776653332 22467789999999999987543 234567899999999999863221   2235689999


Q ss_pred             Eeccccccceee----cccCCCCceeEEecccccc
Q 016710          314 LEIYDCLRLVEV----KIAASSLSIFKYSGDVISF  344 (384)
Q Consensus       314 L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~~~  344 (384)
                      |+++++. +..+    ...+++|++|++++|++..
T Consensus       376 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          376 LALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             EECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EECCCCc-cccCCHhHhccCCcccEEEccCCCccc
Confidence            9999753 3322    3578999999999998754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.29  E-value=2.2e-11  Score=118.30  Aligned_cols=213  Identities=15%  Similarity=0.045  Sum_probs=119.0

Q ss_pred             CCCcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      +++++|++..+  ....+|.. +..+++|++|+|+++.+.  .+. ...+++|++|+++++.+..... ..+..+++|+.
T Consensus        80 ~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~  156 (477)
T 2id5_A           80 FNLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQ  156 (477)
T ss_dssp             TTCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCE
T ss_pred             ccCCEEECCCC--cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCE
Confidence            45555555432  23334433 234566666666665443  121 2246666666666655421110 11345666666


Q ss_pred             EEeeeCCCCcee--ecCCCCCCceEEecccc--ccce-eeecCCceeEEEEeCcccc-cceeccccCccCcEEEeecccc
Q 016710          202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAE--ELQR-LCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHI  275 (384)
Q Consensus       202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~--~l~~-~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~  275 (384)
                      |++.+|......  .+..+++|+.|++.++.  .+.. ....+++|++|+++++... ..........+|+.|++.++.+
T Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  236 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL  236 (477)
T ss_dssp             EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred             EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence            666665322111  13445666777666654  1111 1124567777777765421 1122222345888888888876


Q ss_pred             chHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccce---eecccCCCCceeEEeccccc
Q 016710          276 KDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       276 ~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~~~~~  343 (384)
                      +.-. ...+..+++|+.|+++++. +..+    ...+++|++|.+.++.--.   .....+++|++|++++|.++
T Consensus       237 ~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          237 TAVP-YLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             CSCC-HHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             cccC-HHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence            6322 3456789999999999876 3222    2345899999999763222   22356899999999999764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.28  E-value=9.9e-12  Score=125.21  Aligned_cols=173  Identities=9%  Similarity=-0.021  Sum_probs=114.2

Q ss_pred             hCCCcEEEEEeCCCCCc----------------ccCcccc--CCCCccEEEecCeeec--CCCcc-CCCCCCeEEeeeee
Q 016710          125 GCNVKELSLELLGNPRF----------------NLPEIIL--CSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVD  183 (384)
Q Consensus       125 ~~~l~~L~l~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~l~--~~~~~-~~~~L~~L~L~~~~  183 (384)
                      ..++++|++........                .+|..+.  .+++|++|++++|.+.  .|... .+++|++|+++++.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            36899999986543220                1899988  9999999999998654  44333 79999999999998


Q ss_pred             -cChHHHHHHH------cCCCCccEEEeeeCCCCcee---ecCCCCCCceEEecccccccee--eecCCceeEEEEeCcc
Q 016710          184 -ATDLVLQSLL------IGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCDAEELQRL--CIIAQDVQEVSIQGPL  251 (384)
Q Consensus       184 -~~~~~l~~l~------~~~p~Le~L~L~~c~~~~~~---~i~~~~~L~~L~l~~~~~l~~~--~~~~p~L~~L~l~~~~  251 (384)
                       ++...+..-+      ..+++|+.|++.+|......   .+..+++|+.|+++++.-...+  ....++|+.|+++++.
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence             6552222222      34589999999998655222   2567789999999988521122  1245678888887766


Q ss_pred             cccceeccccCcc-CcEEEeeccccchHHHHHHhcc--CCCcceEeecccc
Q 016710          252 PFQCKFNLASCKF-LKYLRFALTHIKDEWLCNQISK--FPLLESLLIAGCD  299 (384)
Q Consensus       252 ~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~l~~~--~p~L~~L~l~~c~  299 (384)
                      ....+..+..+++ |+.|+++++.++.  +...+..  +++|+.|+++++.
T Consensus       365 l~~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          365 ITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             EEECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSC
T ss_pred             cccccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCc
Confidence            4433444566677 7788777776551  2222222  2366677766654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.28  E-value=2.1e-12  Score=122.13  Aligned_cols=199  Identities=16%  Similarity=0.105  Sum_probs=106.5

Q ss_pred             ccCCCCccEEEecCeeec-----CCCc--------cCCCCCCeEEeeeeecChH---HHHHHHcCCCCccEEEeeeCCCC
Q 016710          147 ILCSNSIEILTLAGLKLE-----SPRS--------VKLSSLTKLFLMRVDATDL---VLQSLLIGCPLIEYLSLQLCPGL  210 (384)
Q Consensus       147 l~~~~~L~~L~L~~~~l~-----~~~~--------~~~~~L~~L~L~~~~~~~~---~l~~l~~~~p~Le~L~L~~c~~~  210 (384)
                      +..+++|++|+|++|.+.     .|..        ..+++|++|+|+++.++..   .+...+..+++|+.|+|.+|...
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            445666666666665322     0111        2456666677666666332   23334456666777777666432


Q ss_pred             ce--eec----CCC---------CCCceEEeccccc----cce---eeecCCceeEEEEeCccccc------ceeccccC
Q 016710          211 KN--LEL----SGL---------TKLNKFEVCDAEE----LQR---LCIIAQDVQEVSIQGPLPFQ------CKFNLASC  262 (384)
Q Consensus       211 ~~--~~i----~~~---------~~L~~L~l~~~~~----l~~---~~~~~p~L~~L~l~~~~~~~------~~~~~~~~  262 (384)
                      ..  ..+    ..+         ++|+.|.+++|.-    +..   ....+++|++|+++++....      .+..+..+
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~  215 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  215 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence            10  001    111         5677777766641    111   11145677777776665321      11134567


Q ss_pred             ccCcEEEeeccccchH---HHHHHhccCCCcceEeecccccccc----cc-----cCCCcccEEeccccccce----eec
Q 016710          263 KFLKYLRFALTHIKDE---WLCNQISKFPLLESLLIAGCDDLKS----IN-----ISSRSLKLLEIYDCLRLV----EVK  326 (384)
Q Consensus       263 ~~L~~L~L~~~~~~~~---~~~~l~~~~p~L~~L~l~~c~~l~~----~~-----~~~~~L~~L~l~~c~~l~----~~~  326 (384)
                      ++|+.|+|++|.+++.   .+...+..+++|+.|++++|..-..    +.     ..+++|++|+|+++.--.    .++
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence            7777777777776542   2334456677777777777652211    11     125777777777653111    122


Q ss_pred             ----ccCCCCceeEEeccccccc
Q 016710          327 ----IAASSLSIFKYSGDVISFQ  345 (384)
Q Consensus       327 ----~~~~~L~~L~l~~~~~~~~  345 (384)
                          .++++|++|++++|.++..
T Consensus       296 ~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          296 TVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHhcCCCceEEEccCCcCCcc
Confidence                3467777777777766433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.27  E-value=1.2e-11  Score=120.68  Aligned_cols=205  Identities=20%  Similarity=0.108  Sum_probs=138.5

Q ss_pred             CCCcEEEEEeCCCCCcccC-ccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          126 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      +++++|+++.+.  ...++ ..+..+++|++|+|++|.+. .+....+++|++|+|++|.++.      +...|.|+.|+
T Consensus        34 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSC--CCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEE
T ss_pred             CCccEEEeeCCc--CCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEE
Confidence            378888886543  33343 46667899999999998765 2224478999999999988732      22458899999


Q ss_pred             eeeCCCCceeecCCCCCCceEEecccc--ccceee-ecCCceeEEEEeCcccccc-eecc-ccCccCcEEEeeccccchH
Q 016710          204 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQC-KFNL-ASCKFLKYLRFALTHIKDE  278 (384)
Q Consensus       204 L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~-~~~p~L~~L~l~~~~~~~~-~~~~-~~~~~L~~L~L~~~~~~~~  278 (384)
                      +.+|.... .....+++|+.|+++++.  .+.... ...++|+.|+++++..... +..+ ..+++|+.|+|++|.++..
T Consensus       106 L~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          106 AANNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             CCSSCCCC-EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CcCCcCCC-CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            99886443 333456889999999886  222222 2568899999988764332 2223 3578999999988887643


Q ss_pred             HHHHHhccCCCcceEeecccccc--cccccCCCcccEEeccccccceeec---ccCCCCceeEEeccccc
Q 016710          279 WLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVIS  343 (384)
Q Consensus       279 ~~~~l~~~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~  343 (384)
                         .-...+++|+.|+++++..-  ......+++|+.|+++++. +..++   ..+++|+.|++++|++.
T Consensus       185 ---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          185 ---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ---ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             ---cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence               12235789999999887522  1122345789999998653 33333   45788999999888765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.27  E-value=2.5e-11  Score=114.75  Aligned_cols=208  Identities=14%  Similarity=0.025  Sum_probs=144.7

Q ss_pred             CCCcEEEEEeCCCCCcccCccc-cCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLPEII-LCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      +++++|++..+.  ...+|..+ ..+++|++|+++++.+.  .+. ...+++|++|+++++.+....    +..++.|+.
T Consensus       117 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~  190 (390)
T 3o6n_A          117 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH  190 (390)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSE
T ss_pred             CCCCEEECCCCc--cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccce
Confidence            678888886543  45677765 56899999999998765  222 236899999999998874322    344666666


Q ss_pred             EEeeeCCCC------------------ceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccc-eeccc
Q 016710          202 LSLQLCPGL------------------KNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQC-KFNLA  260 (384)
Q Consensus       202 L~L~~c~~~------------------~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~-~~~~~  260 (384)
                      |++.++...                  ........++|+.|++.++.  .. ......|+|+.|+++++..... +..+.
T Consensus       191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             EECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             eecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            666554221                  11222334689999999986  22 1223678999999999874433 33567


Q ss_pred             cCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc---cCCCcccEEeccccccceee-cccCCCCceeE
Q 016710          261 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEV-KIAASSLSIFK  336 (384)
Q Consensus       261 ~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~c~~l~~~-~~~~~~L~~L~  336 (384)
                      .+++|+.|++.++.++.-  ......+|+|+.|+++++. +..+.   ..+++|++|+++++. +..+ ...+++|++|+
T Consensus       270 ~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~  345 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLT  345 (390)
T ss_dssp             TCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEE
T ss_pred             ccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEE
Confidence            899999999999987642  2234578999999999985 33322   245899999999864 3322 46799999999


Q ss_pred             Eecccccc
Q 016710          337 YSGDVISF  344 (384)
Q Consensus       337 l~~~~~~~  344 (384)
                      +++|++..
T Consensus       346 l~~N~~~~  353 (390)
T 3o6n_A          346 LSHNDWDC  353 (390)
T ss_dssp             CCSSCEEH
T ss_pred             cCCCCccc
Confidence            99998743

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.26  E-value=2.7e-11  Score=121.27  Aligned_cols=212  Identities=19%  Similarity=0.172  Sum_probs=149.9

Q ss_pred             CcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec-CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          128 VKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       128 l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~-~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      ++.+++  .......++.. +..+++|++|+++++.+. .|.. ..+++|++|+++++.+..... ..+..+|+|+.|++
T Consensus       256 L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          256 VESINL--QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEC--TTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEEC
T ss_pred             eeEEEe--ecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEEC
Confidence            444444  33334445544 556899999999998776 4433 378999999999998743221 23567999999999


Q ss_pred             eeCCCCcee---ecCCCCCCceEEecccccccee------eecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccc
Q 016710          205 QLCPGLKNL---ELSGLTKLNKFEVCDAEELQRL------CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTH  274 (384)
Q Consensus       205 ~~c~~~~~~---~i~~~~~L~~L~l~~~~~l~~~------~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~  274 (384)
                      .+|.....+   .+..+++|+.|+++++.- ...      ...+++|++|+++++..... +..+..+++|+.|++.++.
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            998654222   245688999999999862 222      23578999999988763332 2346778999999999988


Q ss_pred             cchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccccce------eecccCCCCceeEEeccccc
Q 016710          275 IKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLV------EVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       275 ~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~------~~~~~~~~L~~L~l~~~~~~  343 (384)
                      +........+..+++|+.|+++++....   .....+++|++|++.++.--.      .....+++|++|++++|.+.
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  489 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS  489 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence            6644333446789999999999986332   223356899999999775322      22467999999999999764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.25  E-value=1.4e-11  Score=120.17  Aligned_cols=187  Identities=13%  Similarity=0.116  Sum_probs=138.5

Q ss_pred             CCCccEEEecCeeec-C-CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710          150 SNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  226 (384)
Q Consensus       150 ~~~L~~L~L~~~~l~-~-~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l  226 (384)
                      +++|++|+|+++.+. . +.. ..+++|++|+|++|.+....  . +..+++|+.|++++|. +..+.  ..++|+.|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCCCC--CCCCcCEEEC
Confidence            558999999998776 2 223 37999999999999883211  1 6789999999999984 33222  2379999999


Q ss_pred             ccccccceeeecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc
Q 016710          227 CDAEELQRLCIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN  305 (384)
Q Consensus       227 ~~~~~l~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~  305 (384)
                      +++.-........++|+.|+++++..... +..+..+++|+.|++++|.++......+...+++|+.|+++++. +..+.
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~  185 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK  185 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred             cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccc
Confidence            99863222233568999999998874432 44567799999999999988765444555578999999999986 32222


Q ss_pred             --cCCCcccEEeccccccceee---cccCCCCceeEEecccccc
Q 016710          306 --ISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVISF  344 (384)
Q Consensus       306 --~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~~~  344 (384)
                        ..+++|++|+++++. +..+   ...+++|++|++++|.++.
T Consensus       186 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          186 GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             ccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcc
Confidence              236899999999763 3323   3568999999999998763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.25  E-value=4.2e-11  Score=110.57  Aligned_cols=209  Identities=15%  Similarity=0.067  Sum_probs=144.9

Q ss_pred             CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      +.++.|++....  ...++. .+..+++|++|+++++.+.  .+.. ..+++|++|+++++.+..-.    ...++.|+.
T Consensus        52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQE  125 (330)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC----SSCCTTCCE
T ss_pred             CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC----hhhcccccE
Confidence            577888775433  444554 5667899999999998766  2333 36899999999998773210    122478999


Q ss_pred             EEeeeCCCCcee--ecCCCCCCceEEeccccc----cc-eeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccc
Q 016710          202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEE----LQ-RLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH  274 (384)
Q Consensus       202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~----l~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~  274 (384)
                      |++.++......  .+..+++|+.|+++++.-    .. ......++|+.|+++++.....+..+  .++|+.|+++++.
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~  203 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK  203 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSC
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCc
Confidence            999988544322  245678999999998852    11 11125789999999887644333222  3899999999988


Q ss_pred             cchHHHHHHhccCCCcceEeecccccccc---cccCCCcccEEeccccccceeec---ccCCCCceeEEecccccc
Q 016710          275 IKDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVISF  344 (384)
Q Consensus       275 ~~~~~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~  344 (384)
                      ++... ...+..+++|+.|+++++..-..   ....+++|++|+++++. +..++   ..+++|++|++++|.++.
T Consensus       204 l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          204 ITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             CCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCc
Confidence            76432 34567899999999999763221   22356899999999763 33443   568999999999998743

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.25  E-value=1.7e-11  Score=118.42  Aligned_cols=200  Identities=17%  Similarity=0.090  Sum_probs=141.6

Q ss_pred             CCCCcccCccccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710          137 GNPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL  213 (384)
Q Consensus       137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~  213 (384)
                      ......+|..+  .++++.|+|+++.+.  .+. ...+++|+.|+|+++.+..... ..+..+++|+.|+|.++......
T Consensus        63 ~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~  139 (452)
T 3zyi_A           63 RRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIP  139 (452)
T ss_dssp             SSCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCC
T ss_pred             CCCcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccC
Confidence            33455667654  378999999998776  233 3379999999999998733211 23567999999999998643211


Q ss_pred             --ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccc-ccce-eccccCccCcEEEeeccccchHHHHHHhc
Q 016710          214 --ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLP-FQCK-FNLASCKFLKYLRFALTHIKDEWLCNQIS  285 (384)
Q Consensus       214 --~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~  285 (384)
                        .+..+++|+.|+++++. +..+.    ...++|+.|+++++.. .... ..+..+++|++|+++++.++.-   .-+.
T Consensus       140 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~  215 (452)
T 3zyi_A          140 SGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLT  215 (452)
T ss_dssp             TTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCT
T ss_pred             hhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---cccc
Confidence              24467899999999985 22322    2578999999988542 2121 2367789999999999987642   2356


Q ss_pred             cCCCcceEeeccccccc---ccccCCCcccEEeccccccce---eecccCCCCceeEEeccccc
Q 016710          286 KFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       286 ~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~~~~~  343 (384)
                      .+++|+.|+++++....   .....+++|++|.+.++.--.   .....+++|++|++++|.++
T Consensus       216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            78999999999976322   223456899999999764222   22356899999999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.25  E-value=1.6e-11  Score=118.07  Aligned_cols=199  Identities=13%  Similarity=0.093  Sum_probs=141.5

Q ss_pred             CCCCcccCccccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710          137 GNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL  213 (384)
Q Consensus       137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~  213 (384)
                      ......+|..+.  ++++.|+|+++.+.  .+ ....+++|++|+|+++.+..-.. ..+..+++|+.|+|.++......
T Consensus        52 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~  128 (440)
T 3zyj_A           52 RKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIP  128 (440)
T ss_dssp             SCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCC
T ss_pred             CCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeC
Confidence            344566776553  78999999998776  22 33479999999999998733211 23567999999999998543221


Q ss_pred             --ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccc-ccce-eccccCccCcEEEeeccccchHHHHHHhc
Q 016710          214 --ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLP-FQCK-FNLASCKFLKYLRFALTHIKDEWLCNQIS  285 (384)
Q Consensus       214 --~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~  285 (384)
                        .+..+++|+.|+++++. +..+.    ...++|+.|+++++.. .... ..+..+++|++|+++++.++.-   .-+.
T Consensus       129 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~  204 (440)
T 3zyj_A          129 NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PNLT  204 (440)
T ss_dssp             TTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---CCCT
T ss_pred             HhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---cccC
Confidence              24567899999999985 22222    2578999999988542 1111 2367789999999999887642   2356


Q ss_pred             cCCCcceEeeccccccc---ccccCCCcccEEeccccccceee----cccCCCCceeEEeccccc
Q 016710          286 KFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV----KIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       286 ~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~~  343 (384)
                      .+++|+.|+++++..-.   .....+++|++|.+.++. +..+    ...+++|++|++++|.++
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             CCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCC
Confidence            78999999999985221   122356899999999763 3322    356899999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.24  E-value=1.5e-11  Score=113.00  Aligned_cols=187  Identities=13%  Similarity=0.116  Sum_probs=138.1

Q ss_pred             CCCCccEEEecCeeecC-C-Cc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEE
Q 016710          149 CSNSIEILTLAGLKLES-P-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE  225 (384)
Q Consensus       149 ~~~~L~~L~L~~~~l~~-~-~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~  225 (384)
                      .+++|++|+++++.+.. + .. ..+++|++|+++++.+....  . +..+++|+.|++++|. +..+.  ..++|+.|.
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc--CCCCcCEEE
Confidence            46799999999987762 2 22 37999999999999883211  1 6789999999999884 22222  347999999


Q ss_pred             eccccccceeeecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc
Q 016710          226 VCDAEELQRLCIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI  304 (384)
Q Consensus       226 l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~  304 (384)
                      ++++.-........++|+.|+++++..... ...+..+++|+.|+++++.++......+...+++|+.|+++++. ++.+
T Consensus       106 l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~  184 (317)
T 3o53_A          106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV  184 (317)
T ss_dssp             CCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred             CCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence            999862222233578999999998874433 33567789999999999987765444555678999999999986 3222


Q ss_pred             c--cCCCcccEEeccccccceee---cccCCCCceeEEeccccc
Q 016710          305 N--ISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       305 ~--~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~~  343 (384)
                      .  ...++|++|+++++. +..+   ...+++|++|++++|.+.
T Consensus       185 ~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          185 KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             ECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             ccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCccc
Confidence            2  236899999999763 3323   356899999999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.24  E-value=1.2e-11  Score=119.51  Aligned_cols=84  Identities=20%  Similarity=0.146  Sum_probs=46.1

Q ss_pred             hCCCcEEEEEeCCCCCc---ccCccccCCCCccEEEecCeeecC--CC--ccCCC----CCCeEEeeeeecChH---HHH
Q 016710          125 GCNVKELSLELLGNPRF---NLPEIILCSNSIEILTLAGLKLES--PR--SVKLS----SLTKLFLMRVDATDL---VLQ  190 (384)
Q Consensus       125 ~~~l~~L~l~~~~~~~~---~lp~~l~~~~~L~~L~L~~~~l~~--~~--~~~~~----~L~~L~L~~~~~~~~---~l~  190 (384)
                      .++++++++..+.....   .++..+..+++|++|+++++.+..  ..  ...++    +|++|++++|.+++.   .+.
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            36677777765443222   344555556677777776665431  00  01233    577777776666432   344


Q ss_pred             HHHcCCCCccEEEeeeCC
Q 016710          191 SLLIGCPLIEYLSLQLCP  208 (384)
Q Consensus       191 ~l~~~~p~Le~L~L~~c~  208 (384)
                      ..+..+++|++|++++|.
T Consensus       107 ~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HHTTSCTTCCEEECCSSB
T ss_pred             HHHccCCceeEEECCCCc
Confidence            445566667777766654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.24  E-value=3.7e-11  Score=120.14  Aligned_cols=210  Identities=14%  Similarity=-0.003  Sum_probs=142.6

Q ss_pred             CCCcEEEEEeCCCCCcccCccc-cCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLPEII-LCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      ++++.|++..+.  ...+|..+ ..+++|++|++++|.+.  .+. ...+++|++|+++++.+....    +..+|.|+.
T Consensus       123 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~  196 (597)
T 3oja_B          123 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH  196 (597)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred             CCCCEEEeeCCC--CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence            688888886543  45677665 57899999999998766  232 236899999999999874322    445677777


Q ss_pred             EEeeeCCCCc------------------eeecCCCCCCceEEeccccccc-eeeecCCceeEEEEeCcccccc-eecccc
Q 016710          202 LSLQLCPGLK------------------NLELSGLTKLNKFEVCDAEELQ-RLCIIAQDVQEVSIQGPLPFQC-KFNLAS  261 (384)
Q Consensus       202 L~L~~c~~~~------------------~~~i~~~~~L~~L~l~~~~~l~-~~~~~~p~L~~L~l~~~~~~~~-~~~~~~  261 (384)
                      |++.++....                  .+.....++|+.|+++++.-.. ......|+|+.|+++++..... +..+..
T Consensus       197 L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             EECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             hhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence            7776653221                  1111123467777777765111 1123578899999988764433 335778


Q ss_pred             CccCcEEEeeccccchHHHHHHhccCCCcceEeecccccc--cccccCCCcccEEeccccccceeecccCCCCceeEEec
Q 016710          262 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSG  339 (384)
Q Consensus       262 ~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~  339 (384)
                      +++|+.|+|+++.++.  +......+|+|+.|+++++...  ......+++|++|+++++.-...-...+++|++|++++
T Consensus       277 l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~  354 (597)
T 3oja_B          277 MQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH  354 (597)
T ss_dssp             CSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCS
T ss_pred             ccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeC
Confidence            9999999999988765  2233456899999999998632  11223458999999998753222346799999999999


Q ss_pred             cccc
Q 016710          340 DVIS  343 (384)
Q Consensus       340 ~~~~  343 (384)
                      |++.
T Consensus       355 N~~~  358 (597)
T 3oja_B          355 NDWD  358 (597)
T ss_dssp             SCEE
T ss_pred             CCCC
Confidence            9874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.24  E-value=2e-12  Score=118.67  Aligned_cols=194  Identities=18%  Similarity=0.125  Sum_probs=117.9

Q ss_pred             CCCCccEEEecCeeec--CCCc---cCCCCCCeEEeeeeecChH--HHHHHHc-CCCCccEEEeeeCCCCcee--ecCCC
Q 016710          149 CSNSIEILTLAGLKLE--SPRS---VKLSSLTKLFLMRVDATDL--VLQSLLI-GCPLIEYLSLQLCPGLKNL--ELSGL  218 (384)
Q Consensus       149 ~~~~L~~L~L~~~~l~--~~~~---~~~~~L~~L~L~~~~~~~~--~l~~l~~-~~p~Le~L~L~~c~~~~~~--~i~~~  218 (384)
                      .+++|++|+++++.+.  .+..   ..+++|++|+++++.+...  .+..+.. ..++|+.|+++++......  .+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5788999999888765  2332   4688999999999888332  2222211 1388999999887543221  34467


Q ss_pred             CCCceEEeccccccc------eee-ecCCceeEEEEeCcccccc---e-eccccCccCcEEEeeccccchHHHHHHhccC
Q 016710          219 TKLNKFEVCDAEELQ------RLC-IIAQDVQEVSIQGPLPFQC---K-FNLASCKFLKYLRFALTHIKDEWLCNQISKF  287 (384)
Q Consensus       219 ~~L~~L~l~~~~~l~------~~~-~~~p~L~~L~l~~~~~~~~---~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  287 (384)
                      ++|+.|+++++.-..      .+. ...++|++|+++++.....   . ..+..+++|+.|+++++.++.......+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            788888888875211      111 2456777777777653311   1 1123457788888877776543211233446


Q ss_pred             CCcceEeecccccccccccCC-CcccEEeccccc--cceeecccCCCCceeEEecccccc
Q 016710          288 PLLESLLIAGCDDLKSINISS-RSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISF  344 (384)
Q Consensus       288 p~L~~L~l~~c~~l~~~~~~~-~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~  344 (384)
                      ++|+.|+++++. ++.+.... ++|++|+++++.  ++.. ...+++|++|++++|+++.
T Consensus       253 ~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            778888887765 22332222 578888887542  2212 3567778888888877653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.23  E-value=1.4e-10  Score=115.78  Aligned_cols=198  Identities=17%  Similarity=0.103  Sum_probs=115.0

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      ++++.|++..+.  ...+|.   .+++|++|+|++|.+. .+.  .+++|++|+++++.+..     +....++|+.|++
T Consensus        61 ~~L~~L~L~~N~--l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNN--LTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCC--CSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEEC
T ss_pred             CCCcEEEecCCC--CCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEEC
Confidence            688888886543  345665   4688999999888765 333  67889999998887622     1125678888888


Q ss_pred             eeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHH-----
Q 016710          205 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEW-----  279 (384)
Q Consensus       205 ~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-----  279 (384)
                      .+|.... +.. .+++|+.|++++|. +..+....++|+.|.+.++.....+   ..+++|+.|++++|.++.-.     
T Consensus       129 ~~N~l~~-lp~-~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~  202 (622)
T 3g06_A          129 FGNQLTS-LPV-LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSE  202 (622)
T ss_dssp             CSSCCSC-CCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred             CCCCCCc-CCC-CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccch
Confidence            8774322 211 24678888888774 2222223445555555554422221   22344555554444432100     


Q ss_pred             ----------HHHHhccCCCcceEeecccccccccccCCCcccEEeccccccceeecccCCCCceeEEeccccc
Q 016710          280 ----------LCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       280 ----------~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~  343 (384)
                                +..+...+++|+.|+++++. ++.+....++|++|+++++ .+..++..+++|++|++++|.++
T Consensus       203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          203 LYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             CCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCC
T ss_pred             hhEEECcCCcccccCCCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCC
Confidence                      00111234566666666653 3344445567777777765 44455556777888888777664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.23  E-value=3.4e-11  Score=124.46  Aligned_cols=171  Identities=11%  Similarity=0.014  Sum_probs=115.9

Q ss_pred             CCCcEEEEEeCCCCCc----------------ccCcccc--CCCCccEEEecCeeec--CCCcc-CCCCCCeEEeeeee-
Q 016710          126 CNVKELSLELLGNPRF----------------NLPEIIL--CSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVD-  183 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~l~--~~~~~-~~~~L~~L~L~~~~-  183 (384)
                      +++++|+|..+.....                .+|..+.  .+++|++|+|++|.+.  .|... .+++|+.|+|+++. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            6899999986543221                2888887  8999999999998654  44333 79999999999997 


Q ss_pred             cCh-H---HHHHH---HcCCCCccEEEeeeCCCCcee---ecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcc
Q 016710          184 ATD-L---VLQSL---LIGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPL  251 (384)
Q Consensus       184 ~~~-~---~l~~l---~~~~p~Le~L~L~~c~~~~~~---~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~  251 (384)
                      ++. .   .+..+   +..+|+|+.|++.+|......   .+..+++|+.|+++++.  .++ .....++|+.|+++++.
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc
Confidence            654 1   22222   246779999999998655222   24677899999999886  222 12256788888888876


Q ss_pred             cccceeccccCcc-CcEEEeeccccchHHHHHHhccCC--CcceEeecccc
Q 016710          252 PFQCKFNLASCKF-LKYLRFALTHIKDEWLCNQISKFP--LLESLLIAGCD  299 (384)
Q Consensus       252 ~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~l~~~~p--~L~~L~l~~c~  299 (384)
                      ....+..+..+++ |+.|+++++.++  .+...+...+  +|+.|+++++.
T Consensus       607 l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          607 IEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             CSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSC
T ss_pred             cccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCc
Confidence            4444445666777 888888877765  1222233332  36667766654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.22  E-value=1.5e-11  Score=110.56  Aligned_cols=187  Identities=13%  Similarity=0.041  Sum_probs=81.3

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecC-CCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES-PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      +.++++.+..+.  ...++ .+..+++|++|+++++.+.. +....+++|++|+++++.+.... ...+..+++|+.|++
T Consensus        41 ~~L~~L~l~~~~--i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSD--IKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCC--ccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEEC
Confidence            556666554322  11222 24456666666666655442 22224556666666655542110 111334555555555


Q ss_pred             eeCCCCceee--cCCCCCCceEEeccccccceeeecCCceeEEEEeCccccccee-ccccCccCcEEEeeccccchHHHH
Q 016710          205 QLCPGLKNLE--LSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLC  281 (384)
Q Consensus       205 ~~c~~~~~~~--i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~  281 (384)
                      .+|.......  +..+++|+.|+++++                     ....... .+..+++|+.|+++++.++.. ..
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n---------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~  174 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHN---------------------QLQSLPKGVFDKLTNLTELDLSYNQLQSL-PE  174 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCC---------------------ccCccCHHHhccCccCCEEECCCCCcCcc-CH
Confidence            5553221111  223445555555544                     2111111 123445555555555544321 11


Q ss_pred             HHhccCCCcceEeecccccccc---cccCCCcccEEeccccccceeecccCCCCceeEEecccc
Q 016710          282 NQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVI  342 (384)
Q Consensus       282 ~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~  342 (384)
                      ..+..+++|+.|+++++..-..   ....+++|++|++.++.    +...||+|+.|++..+.+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWINKH  234 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHHHHT
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHHHhC
Confidence            2234455555555555431111   11233555555555431    123355555555544433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.22  E-value=8.9e-11  Score=107.43  Aligned_cols=164  Identities=21%  Similarity=0.154  Sum_probs=111.9

Q ss_pred             hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      .+++++|++..+.  ...++. +..+++|++|+++++.+. .+....+++|++|+++++.+..-  .. +..+++|+.|+
T Consensus        62 l~~L~~L~L~~n~--i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~  135 (308)
T 1h6u_A           62 LNNLIGLELKDNQ--ITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLY  135 (308)
T ss_dssp             CTTCCEEECCSSC--CCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEE
T ss_pred             cCCCCEEEccCCc--CCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEE
Confidence            4789999986543  444555 778999999999998876 33344799999999999998332  12 67899999999


Q ss_pred             eeeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHH
Q 016710          204 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC  281 (384)
Q Consensus       204 L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  281 (384)
                      +.+|.......+..+++|+.|+++++.  .+.. ....++|+.|+++++...... .+..+++|++|+++++.+.+..  
T Consensus       136 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~--  211 (308)
T 1h6u_A          136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS--  211 (308)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCBCG--
T ss_pred             CCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh-hhcCCCCCCEEEccCCccCccc--
Confidence            999864433335567889999988875  2222 124567777777666533222 1556677777777776655432  


Q ss_pred             HHhccCCCcceEeecccc
Q 016710          282 NQISKFPLLESLLIAGCD  299 (384)
Q Consensus       282 ~l~~~~p~L~~L~l~~c~  299 (384)
                       -+..+++|+.|++++++
T Consensus       212 -~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          212 -PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             -GGTTCTTCCEEEEEEEE
T ss_pred             -cccCCCCCCEEEccCCe
Confidence             14566777777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.20  E-value=6.1e-11  Score=106.60  Aligned_cols=199  Identities=18%  Similarity=0.158  Sum_probs=125.6

Q ss_pred             CcccCccccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee--e
Q 016710          140 RFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--E  214 (384)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--~  214 (384)
                      ...+|..+  .++|++|+++++.+.  .+ ....+++|++|+++++.+.... ...+..+++|+.|++.++......  .
T Consensus        19 l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           19 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh
Confidence            44555544  256888888887665  22 2336788888888888763211 112456788888888877533221  2


Q ss_pred             cCCCCCCceEEecccc--cccee-eecCCceeEEEEeCccccc--ceeccccCccCcEEEeeccccchHH--HHHHhccC
Q 016710          215 LSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFALTHIKDEW--LCNQISKF  287 (384)
Q Consensus       215 i~~~~~L~~L~l~~~~--~l~~~-~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~--~~~l~~~~  287 (384)
                      +..+++|+.|.+.++.  .+... ....++|++|+++++....  .+..+..+++|++|+++++.++...  ...-+..+
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            4457788888888775  22221 2256788888888876433  3445777899999999988765421  11222333


Q ss_pred             CCcc-eEeecccccccccc---cCCCcccEEeccccccceee----cccCCCCceeEEeccccc
Q 016710          288 PLLE-SLLIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEV----KIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       288 p~L~-~L~l~~c~~l~~~~---~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~~  343 (384)
                      +.|. .|+++++. +..+.   ....+|++|+++++. +..+    ...+++|++|++++|++.
T Consensus       176 ~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          176 PLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             TTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cccceeeecCCCc-ccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCccc
Confidence            4443 78888765 22222   223589999998764 3333    356899999999999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.19  E-value=2.7e-12  Score=124.10  Aligned_cols=151  Identities=19%  Similarity=0.175  Sum_probs=93.4

Q ss_pred             CCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecC------CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCC--
Q 016710          127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES------PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCP--  197 (384)
Q Consensus       127 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p--  197 (384)
                      .+++|++.........+...+..+++|++|++++|.+..      +.. ..+++|++|+++++.+++.....+...++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            466777764443333333335568999999999987661      111 25799999999999997777777777776  


Q ss_pred             --CccEEEeeeCCCCc------eeecCCCCCCceEEeccccc----cceee----ecCCceeEEEEeCcccccc-----e
Q 016710          198 --LIEYLSLQLCPGLK------NLELSGLTKLNKFEVCDAEE----LQRLC----IIAQDVQEVSIQGPLPFQC-----K  256 (384)
Q Consensus       198 --~Le~L~L~~c~~~~------~~~i~~~~~L~~L~l~~~~~----l~~~~----~~~p~L~~L~l~~~~~~~~-----~  256 (384)
                        +|++|++.+|....      ...+..+++|+.|+++++.-    ...+.    ...++|++|+++++.....     .
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              79999999986432      12345678899999988751    11111    1134577777766542210     1


Q ss_pred             eccccCccCcEEEeeccccch
Q 016710          257 FNLASCKFLKYLRFALTHIKD  277 (384)
Q Consensus       257 ~~~~~~~~L~~L~L~~~~~~~  277 (384)
                      ..+..+++|++|+++++.+++
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHhhCCCCCEEECcCCCcch
Confidence            112334555555555554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=115.79  Aligned_cols=228  Identities=12%  Similarity=0.080  Sum_probs=150.4

Q ss_pred             CCCCcccCccccCCCCccEEEecCeeec-C-C-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710          137 GNPRFNLPEIILCSNSIEILTLAGLKLE-S-P-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL  213 (384)
Q Consensus       137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~-~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~  213 (384)
                      ......+|..+.  ++|++|+++++.+. . + ....+++|++|+++++.+.... ...+..+++|+.|+++++......
T Consensus        40 ~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~  116 (353)
T 2z80_A           40 SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLS  116 (353)
T ss_dssp             STTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCC
T ss_pred             CCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCC
Confidence            344566776553  68999999998776 2 2 2347999999999999874321 122567899999999998644322


Q ss_pred             --ecCCCCCCceEEecccc--ccce--eeecCCceeEEEEeCcc-cccc-eeccccCccCcEEEeeccccchHHHHHHhc
Q 016710          214 --ELSGLTKLNKFEVCDAE--ELQR--LCIIAQDVQEVSIQGPL-PFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQIS  285 (384)
Q Consensus       214 --~i~~~~~L~~L~l~~~~--~l~~--~~~~~p~L~~L~l~~~~-~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~  285 (384)
                        .+..+++|+.|+++++.  .+..  .....++|++|+++++. .... ...+..+++|++|++.++.++.. ....+.
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~  195 (353)
T 2z80_A          117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLK  195 (353)
T ss_dssp             HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTT
T ss_pred             HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHh
Confidence              24678899999999985  3322  22367899999999873 2222 23467789999999999886643 234567


Q ss_pred             cCCCcceEeecccccccccc----cCCCcccEEeccccccce----------------------------------eecc
Q 016710          286 KFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLRLV----------------------------------EVKI  327 (384)
Q Consensus       286 ~~p~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c~~l~----------------------------------~~~~  327 (384)
                      .+++|++|+++++.. ..+.    ...++|++|+++++.--.                                  +...
T Consensus       196 ~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~  274 (353)
T 2z80_A          196 SIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN  274 (353)
T ss_dssp             TCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred             ccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence            789999999998762 2222    235788999887543100                                  0113


Q ss_pred             cCCCCceeEEeccccccceEEEEeec-cC-cceeeccCCcchhhh
Q 016710          328 AASSLSIFKYSGDVISFQLGAITFSK-SH-LLFQTENSSSEWYTE  370 (384)
Q Consensus       328 ~~~~L~~L~l~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~~~~~~  370 (384)
                      .+++|++|++++|.++.-...+ |.. .. -++..++|+..+.|+
T Consensus       275 ~l~~L~~L~Ls~N~l~~i~~~~-~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          275 QISGLLELEFSRNQLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccCCCEEECCCCCCCccCHHH-HhcCCCCCEEEeeCCCccCcCC
Confidence            5789999999999775211110 111 11 125556666555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.18  E-value=1.7e-11  Score=115.77  Aligned_cols=204  Identities=15%  Similarity=0.115  Sum_probs=142.7

Q ss_pred             cccCccccCCCCccEEEecCeeecCC-------CccCCCCCCeEEeeeeecC------hHHH---HHHHcCCCCccEEEe
Q 016710          141 FNLPEIILCSNSIEILTLAGLKLESP-------RSVKLSSLTKLFLMRVDAT------DLVL---QSLLIGCPLIEYLSL  204 (384)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~l~~~-------~~~~~~~L~~L~L~~~~~~------~~~l---~~l~~~~p~Le~L~L  204 (384)
                      ..++..+..+++|++|+|++|.+...       ....+++|++|+|+++.++      ...+   ...+..+++|+.|+|
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            34555666789999999999877611       1226899999999998542      1233   333568999999999


Q ss_pred             eeCCCCc----ee--ecCCCCCCceEEeccccc----cceee---ecC---------CceeEEEEeCcccc--cce---e
Q 016710          205 QLCPGLK----NL--ELSGLTKLNKFEVCDAEE----LQRLC---IIA---------QDVQEVSIQGPLPF--QCK---F  257 (384)
Q Consensus       205 ~~c~~~~----~~--~i~~~~~L~~L~l~~~~~----l~~~~---~~~---------p~L~~L~l~~~~~~--~~~---~  257 (384)
                      ++|....    .+  .+..+++|+.|++++|.-    ...+.   ...         ++|++|.++++...  ..+   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            9986442    11  234578999999999961    11111   112         89999999987643  222   2


Q ss_pred             ccccCccCcEEEeeccccchHHHHH----HhccCCCcceEeecccccc----c---ccccCCCcccEEeccccccce---
Q 016710          258 NLASCKFLKYLRFALTHIKDEWLCN----QISKFPLLESLLIAGCDDL----K---SINISSRSLKLLEIYDCLRLV---  323 (384)
Q Consensus       258 ~~~~~~~L~~L~L~~~~~~~~~~~~----l~~~~p~L~~L~l~~c~~l----~---~~~~~~~~L~~L~l~~c~~l~---  323 (384)
                      .+..+++|+.|++.+|.+++..+..    .+..+++|+.|+++++..-    .   .....+++|++|+|++|.--.   
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            3557899999999999998765333    5568999999999998731    2   223456899999999875211   


Q ss_pred             -eec-----ccCCCCceeEEecccccc
Q 016710          324 -EVK-----IAASSLSIFKYSGDVISF  344 (384)
Q Consensus       324 -~~~-----~~~~~L~~L~l~~~~~~~  344 (384)
                       .++     ..+++|++|++++|.++.
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCH
Confidence             122     238999999999998765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.17  E-value=5.7e-11  Score=107.33  Aligned_cols=189  Identities=16%  Similarity=0.094  Sum_probs=118.8

Q ss_pred             CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeee-cChHHHHHHHcCCCCcc
Q 016710          126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVD-ATDLVLQSLLIGCPLIE  200 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le  200 (384)
                      +++++|++...  ....++. .+..+++|++|+++++.+.  .+. ...+++|++|+++++. +..-. ...+..+++|+
T Consensus        32 ~~l~~L~l~~n--~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~  108 (285)
T 1ozn_A           32 AASQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH  108 (285)
T ss_dssp             TTCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred             CCceEEEeeCC--cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence            56777776432  2334443 4556888888888887655  222 2367888888888885 42211 12245678888


Q ss_pred             EEEeeeCCCCcee--ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccccccee-ccccCccCcEEEeecc
Q 016710          201 YLSLQLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALT  273 (384)
Q Consensus       201 ~L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~  273 (384)
                      .|++.++......  .+..+++|+.|+++++. +..+.    ...++|++|+++++....... .+..+++|+.|++.++
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence            8888877543221  24456788888888875 11111    246788888888776433332 3666788888888888


Q ss_pred             ccchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEecccc
Q 016710          274 HIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDC  319 (384)
Q Consensus       274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c  319 (384)
                      .++... ...+..+++|+.|+++++..-.   .....+++|++|++.+.
T Consensus       188 ~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          188 RVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cccccC-HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            765432 3345678888888888865221   11234678888888754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.16  E-value=4.4e-10  Score=108.45  Aligned_cols=76  Identities=13%  Similarity=0.097  Sum_probs=29.8

Q ss_pred             CccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeecccc
Q 016710          198 LIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI  275 (384)
Q Consensus       198 ~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  275 (384)
                      +|+.|++.+|.......+..+++|+.|+++++. +..+....++|+.|+++++.....+ .+..+++|++|+++++.+
T Consensus       174 ~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             cccEEECcCCcCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC
Confidence            444444444432221122334445555554442 1111112234555555444322222 233444455555544443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.16  E-value=4.8e-10  Score=110.72  Aligned_cols=212  Identities=16%  Similarity=0.121  Sum_probs=136.7

Q ss_pred             CCCcEEEEEeCCCCCccc-CccccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      +.+++|++..+.  ...+ |..+..+++|++|+++++.+.  .+. ...+++|++|+++++.+..... ..+..+++|++
T Consensus        26 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNK--ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSC--CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCE
T ss_pred             CCccEEECcCCc--cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcE
Confidence            578888886543  3333 456677999999999998765  223 3378999999999998743222 23567899999


Q ss_pred             EEeeeCCCCce---eecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccccc-ceeccccCccCcEEEeecc
Q 016710          202 LSLQLCPGLKN---LELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALT  273 (384)
Q Consensus       202 L~L~~c~~~~~---~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~  273 (384)
                      |++++|.....   ..+..+++|+.|+++++..+..+.    ...++|+.|++.++.... .+..+..+++|++|++..+
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            99998854321   234567899999999886333332    256789999998876332 3334667888999999887


Q ss_pred             ccchHHHHHHhccCCCcceEeeccccccc------ccccCCCcccEEecccccc-------ceeecccCCCCceeEEecc
Q 016710          274 HIKDEWLCNQISKFPLLESLLIAGCDDLK------SINISSRSLKLLEIYDCLR-------LVEVKIAASSLSIFKYSGD  340 (384)
Q Consensus       274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~------~~~~~~~~L~~L~l~~c~~-------l~~~~~~~~~L~~L~l~~~  340 (384)
                      ..... ....+..+++|+.|+++++....      .+...+++|++|++.++.-       +......+++|+.+++.++
T Consensus       183 ~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          183 ESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             BSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             ccccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            65432 22334568899999998865222      1222346777777765421       1111233555555555555


Q ss_pred             c
Q 016710          341 V  341 (384)
Q Consensus       341 ~  341 (384)
                      .
T Consensus       262 ~  262 (549)
T 2z81_A          262 T  262 (549)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.16  E-value=2e-10  Score=112.69  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=41.1

Q ss_pred             cCCceeEEEEeCccccc-ceeccccCccCcEEEeeccccchH-HHHHHhccCCCcceEeecccc
Q 016710          238 IAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDE-WLCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       238 ~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~p~L~~L~l~~c~  299 (384)
                      ..++|++|+++++.... .+..+..+++|+.|+++++.++.- .+...+..+++|+.|+++++.
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS  385 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence            45677777777665322 233456678888888888877642 334556778888888888765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.16  E-value=4e-10  Score=112.60  Aligned_cols=194  Identities=20%  Similarity=0.163  Sum_probs=124.6

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      +++++|+++.+.  ...+|.   .+++|++|++++|.+. .+.  .+++|+.|+++++.+..     +....++|+.|++
T Consensus        81 ~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~L  148 (622)
T 3g06_A           81 PELRTLEVSGNQ--LTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS-----LPVLPPGLQELSV  148 (622)
T ss_dssp             TTCCEEEECSCC--CSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC-----CCCCCTTCCEEEC
T ss_pred             CCCCEEEcCCCc--CCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc-----CCCCCCCCCEEEC
Confidence            678888886533  345565   4678888888887665 222  56777777777776522     1223466777777


Q ss_pred             eeCCCCc-------------------eeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccC
Q 016710          205 QLCPGLK-------------------NLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFL  265 (384)
Q Consensus       205 ~~c~~~~-------------------~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L  265 (384)
                      ++|....                   .+. ..+++|+.|+++++. +..+....++|+.|.+.++.....+   ..+++|
T Consensus       149 s~N~l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L  223 (622)
T 3g06_A          149 SDNQLASLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLP---ALPSGL  223 (622)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCC---CCCTTC
T ss_pred             cCCcCCCcCCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccC---CCCCCC
Confidence            6663221                   001 122456666666553 2223333456666666665432222   234889


Q ss_pred             cEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEeccccccceee---cccCCCCceeEEecccc
Q 016710          266 KYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVI  342 (384)
Q Consensus       266 ~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~  342 (384)
                      +.|++++|.++.     +...+++|+.|+++++. ++.+....++|++|+++++ .+..+   ...+++|+.|++++|++
T Consensus       224 ~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          224 KELIVSGNRLTS-----LPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             CEEEccCCccCc-----CCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence            999999988764     22668999999999985 5555557789999999976 33344   36799999999999987


Q ss_pred             c
Q 016710          343 S  343 (384)
Q Consensus       343 ~  343 (384)
                      +
T Consensus       297 ~  297 (622)
T 3g06_A          297 S  297 (622)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.16  E-value=2.1e-10  Score=113.79  Aligned_cols=123  Identities=11%  Similarity=0.119  Sum_probs=63.5

Q ss_pred             CCceEEeccccccceee-ecCCceeEEEEeCccccc-ceeccccCccCcEEEeeccccchH-HHHHHhccCCCcceEeec
Q 016710          220 KLNKFEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDE-WLCNQISKFPLLESLLIA  296 (384)
Q Consensus       220 ~L~~L~l~~~~~l~~~~-~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~p~L~~L~l~  296 (384)
                      +|+.|++.++.-..... ...++|++|+++++.... .+..+..+++|+.|++.++.++.- .+...+..+++|+.|+++
T Consensus       332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            46666666664211111 245566666666654222 222345566666666666655431 223334555666666665


Q ss_pred             ccccc-------------------------cccccCC-CcccEEeccccccceeec---ccCCCCceeEEeccccc
Q 016710          297 GCDDL-------------------------KSINISS-RSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVIS  343 (384)
Q Consensus       297 ~c~~l-------------------------~~~~~~~-~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~  343 (384)
                      ++...                         ..+.... ++|++|+++++ .+..++   ..+++|++|++++|.++
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC
Confidence            54421                         1111122 46666666654 233333   35778888888888764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.16  E-value=2.8e-11  Score=121.94  Aligned_cols=209  Identities=11%  Similarity=0.134  Sum_probs=121.5

Q ss_pred             CCCcEEEEEeCCCCCc-ccCccccCCCCccEEEecCeeec-CCCc-cCCCC-CCeEEeeeeecChHHHHHHHcC--CCCc
Q 016710          126 CNVKELSLELLGNPRF-NLPEIILCSNSIEILTLAGLKLE-SPRS-VKLSS-LTKLFLMRVDATDLVLQSLLIG--CPLI  199 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~l~-~~~~-~~~~~-L~~L~L~~~~~~~~~l~~l~~~--~p~L  199 (384)
                      +++++|++..+.  .. .+| .+..+++|++|+++++.+. .+.. ..+++ |++|+++++.+.  .+...+..  +++|
T Consensus       330 ~~L~~L~L~~N~--l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L  404 (636)
T 4eco_A          330 KKLGMLECLYNQ--LEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVM  404 (636)
T ss_dssp             TTCCEEECCSCC--CEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCE
T ss_pred             CCCCEEeCcCCc--Cccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCcc
Confidence            578888886433  33 677 6667888999999888665 3333 36788 999999888774  11112222  3478


Q ss_pred             cEEEeeeCCCCce--eecC-------CCCCCceEEeccccccceee---e-cCCceeEEEEeCcccccceec--------
Q 016710          200 EYLSLQLCPGLKN--LELS-------GLTKLNKFEVCDAEELQRLC---I-IAQDVQEVSIQGPLPFQCKFN--------  258 (384)
Q Consensus       200 e~L~L~~c~~~~~--~~i~-------~~~~L~~L~l~~~~~l~~~~---~-~~p~L~~L~l~~~~~~~~~~~--------  258 (384)
                      +.|++.+|.....  ..+.       .+++|+.|+++++. +..+.   . ..++|+.|+++++.....+..        
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~  483 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN  483 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred             CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence            8888887754321  1122       34577788887774 11222   1 357777777777653322211        


Q ss_pred             cccCccCcEEEeeccccchHHHHHHhc--cCCCcceEeecccccc--cccccCCCcccEEeccccc------cceee---
Q 016710          259 LASCKFLKYLRFALTHIKDEWLCNQIS--KFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCL------RLVEV---  325 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~--~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~------~l~~~---  325 (384)
                      ...+++|+.|+++++.++.  +...+.  .+++|+.|+++++..-  ......+++|++|+++++.      -...+   
T Consensus       484 ~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~  561 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG  561 (636)
T ss_dssp             CTTGGGCCEEECCSSCCCB--CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred             ccccCCccEEECcCCcCCc--cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence            1122377777777776652  233333  6777777777775422  1122245677777775322      11122   


Q ss_pred             cccCCCCceeEEecccc
Q 016710          326 KIAASSLSIFKYSGDVI  342 (384)
Q Consensus       326 ~~~~~~L~~L~l~~~~~  342 (384)
                      ...+++|++|++++|.+
T Consensus       562 l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          562 ITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             GGGCSSCCEEECCSSCC
T ss_pred             HhcCCCCCEEECCCCcC
Confidence            24567777777777765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.15  E-value=2.2e-10  Score=103.90  Aligned_cols=190  Identities=16%  Similarity=0.058  Sum_probs=108.4

Q ss_pred             cCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710          148 LCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  226 (384)
Q Consensus       148 ~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l  226 (384)
                      ..++++++++++++.+. .|... .++++.|+|+++.+..... ..+..+++|+.|++.++..........+++|+.|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L   84 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL   84 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred             cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence            34556666666665544 22222 3566666666666522111 124456667777766654332222245567777777


Q ss_pred             cccc--ccceeeecCCceeEEEEeCcccccce-eccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccc
Q 016710          227 CDAE--ELQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS  303 (384)
Q Consensus       227 ~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~  303 (384)
                      +++.  .+.......++|++|+++++...... ..+..+++|++|++.++.++.- ....+..+++|+.|+++++. ++.
T Consensus        85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~  162 (290)
T 1p9a_G           85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LTE  162 (290)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CSC
T ss_pred             CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-CCc
Confidence            7664  22222224567777777776543332 2356678888888887776532 12345567888888888764 222


Q ss_pred             cc----cCCCcccEEeccccccceeec---ccCCCCceeEEecccc
Q 016710          304 IN----ISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVI  342 (384)
Q Consensus       304 ~~----~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~  342 (384)
                      +.    ...++|++|++.++. +..++   ...++|+.|++.+|+.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCc
Confidence            22    235788888887542 22333   3466788888888765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.14  E-value=1.6e-10  Score=114.12  Aligned_cols=81  Identities=16%  Similarity=0.135  Sum_probs=50.2

Q ss_pred             CCCcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec---CCC-ccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCc
Q 016710          126 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE---SPR-SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLI  199 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~---~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L  199 (384)
                      .++++|+++.+  ....++.. +..+++|++|+++++.+.   .+. ...+++|++|+++++.. +.- ....+..+++|
T Consensus        74 ~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L  150 (549)
T 2z81_A           74 GSLEHLDLSDN--HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSL  150 (549)
T ss_dssp             TTCCEEECTTS--CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEE
T ss_pred             ccCCEEECCCC--ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc-CHhhhhccccc
Confidence            57777777533  23444443 566788888888887664   222 23678888888888763 221 11124567888


Q ss_pred             cEEEeeeCCC
Q 016710          200 EYLSLQLCPG  209 (384)
Q Consensus       200 e~L~L~~c~~  209 (384)
                      +.|++.++..
T Consensus       151 ~~L~L~~n~l  160 (549)
T 2z81_A          151 NELEIKALSL  160 (549)
T ss_dssp             EEEEEEETTC
T ss_pred             CeeeccCCcc
Confidence            8888887653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.14  E-value=5.2e-11  Score=109.06  Aligned_cols=83  Identities=11%  Similarity=0.079  Sum_probs=49.1

Q ss_pred             ccCccCcEEEeeccccchHHHHHHhccC---CCcceEeecccccccccccC-CCcccEEeccccccce-eecccCCCCce
Q 016710          260 ASCKFLKYLRFALTHIKDEWLCNQISKF---PLLESLLIAGCDDLKSINIS-SRSLKLLEIYDCLRLV-EVKIAASSLSI  334 (384)
Q Consensus       260 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~---p~L~~L~l~~c~~l~~~~~~-~~~L~~L~l~~c~~l~-~~~~~~~~L~~  334 (384)
                      ..+++|++|++++|.+++.. ...+..+   ++|++|+++++. ++.+... .++|++|+++++.--. ..+..+++|++
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~  298 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDN  298 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSC
T ss_pred             hcCCCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCCchhhhCCCccE
Confidence            44577777777777655421 1112223   677777777765 2222221 2688888887553111 23467788888


Q ss_pred             eEEecccccc
Q 016710          335 FKYSGDVISF  344 (384)
Q Consensus       335 L~l~~~~~~~  344 (384)
                      |++++|+++.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            8888887653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.14  E-value=8.9e-11  Score=108.51  Aligned_cols=39  Identities=21%  Similarity=0.152  Sum_probs=16.1

Q ss_pred             cccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          259 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      +..+++|+.|++.++.++... ...+..+++|+.|+++++
T Consensus       213 l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  251 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNN  251 (332)
T ss_dssp             STTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCC
Confidence            334444555555444433211 112334445555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.14  E-value=7.9e-11  Score=121.76  Aligned_cols=210  Identities=12%  Similarity=0.079  Sum_probs=120.4

Q ss_pred             CCCcEEEEEeCCCCCcccCc--cccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCC-ccE
Q 016710          126 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPL-IEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~-Le~  201 (384)
                      ++++.|++..+..  ..+|.  .+..+++|+.|+|+++.+. .+....+++|+.|+|+++.+.  .+...+..++. |+.
T Consensus       548 ~~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          548 PKIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TTCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred             CCccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence            4788888765443  37777  7777888888888887655 443336778888888887764  22222455666 777


Q ss_pred             EEeeeCCCCceee--cC--CCCCCceEEeccccc----------------------------cceee----ecCCceeEE
Q 016710          202 LSLQLCPGLKNLE--LS--GLTKLNKFEVCDAEE----------------------------LQRLC----IIAQDVQEV  245 (384)
Q Consensus       202 L~L~~c~~~~~~~--i~--~~~~L~~L~l~~~~~----------------------------l~~~~----~~~p~L~~L  245 (384)
                      |++.+|... .+.  +.  ..++|+.|+++++.-                            +..+.    ..+++|+.|
T Consensus       624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI  702 (876)
T ss_dssp             EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred             EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence            777776432 111  01  112244555444430                            11111    134556666


Q ss_pred             EEeCcccccceec--------cccCccCcEEEeeccccchHHHHHHhc--cCCCcceEeeccccc--ccccccCCCcccE
Q 016710          246 SIQGPLPFQCKFN--------LASCKFLKYLRFALTHIKDEWLCNQIS--KFPLLESLLIAGCDD--LKSINISSRSLKL  313 (384)
Q Consensus       246 ~l~~~~~~~~~~~--------~~~~~~L~~L~L~~~~~~~~~~~~l~~--~~p~L~~L~l~~c~~--l~~~~~~~~~L~~  313 (384)
                      +++++.....+..        ..++++|+.|+|++|.++  .+...+.  .+++|+.|+++++..  +......+++|+.
T Consensus       703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~  780 (876)
T 4ecn_A          703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA  780 (876)
T ss_dssp             ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCE
T ss_pred             ECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCE
Confidence            6655442221111        112347888888877765  2333444  778888888887652  2222235578888


Q ss_pred             Eeccccc-----c-ceee---cccCCCCceeEEecccc
Q 016710          314 LEIYDCL-----R-LVEV---KIAASSLSIFKYSGDVI  342 (384)
Q Consensus       314 L~l~~c~-----~-l~~~---~~~~~~L~~L~l~~~~~  342 (384)
                      |+|+++.     . ...+   ...+++|++|++++|.+
T Consensus       781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            8886522     1 1122   25688888888888876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.13  E-value=2.6e-10  Score=100.26  Aligned_cols=184  Identities=10%  Similarity=0.065  Sum_probs=95.9

Q ss_pred             CccEEEecCeeec-C-C-CccCCCCCCeEEeeeee-cChHHHHHHHcCCCCccEEEeeeCCCCceee---cCCCCCCceE
Q 016710          152 SIEILTLAGLKLE-S-P-RSVKLSSLTKLFLMRVD-ATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---LSGLTKLNKF  224 (384)
Q Consensus       152 ~L~~L~L~~~~l~-~-~-~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~---i~~~~~L~~L  224 (384)
                      +|++|+++++.+. . + ....+++|++|+++++. ++.-. ...+..+++|+.|++.+|..++.+.   +..+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            5556666555443 1 1 11245566666666553 31100 0113455666666666533333322   1245566666


Q ss_pred             Eecccc--ccceeeecCCcee---EEEEeCc-cccccee-ccccCccCc-EEEeeccccchHHHHHHhccCCCcceEeec
Q 016710          225 EVCDAE--ELQRLCIIAQDVQ---EVSIQGP-LPFQCKF-NLASCKFLK-YLRFALTHIKDEWLCNQISKFPLLESLLIA  296 (384)
Q Consensus       225 ~l~~~~--~l~~~~~~~p~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~  296 (384)
                      ++.++.  .++. ....++|+   .|+++++ .....+. .+..+++|+ .|+++++.++.-. ...+.. ++|+.|+++
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-GYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-TTTTTT-CEEEEEECT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-HhhcCC-CCCCEEEcC
Confidence            666553  2221 11344444   7777766 3322222 256677888 8888777655211 122233 678888888


Q ss_pred             cccccccc----ccCC-CcccEEeccccccceeec-ccCCCCceeEEecc
Q 016710          297 GCDDLKSI----NISS-RSLKLLEIYDCLRLVEVK-IAASSLSIFKYSGD  340 (384)
Q Consensus       297 ~c~~l~~~----~~~~-~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~~  340 (384)
                      +++.++.+    ...+ ++|++|++.+. .+..++ ...++|++|++.++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCc
Confidence            87544333    2234 77888888763 333333 35778888887664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.12  E-value=1.1e-10  Score=107.95  Aligned_cols=209  Identities=14%  Similarity=0.040  Sum_probs=129.4

Q ss_pred             CCCcEEEEEeCCCCCcccC-ccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      ++++.|++..+.  ...++ ..+..+++|++|+++++.+.  .+.. ..+++|++|+++++.+..-  .  ....++|++
T Consensus        54 ~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~--~~~~~~L~~  127 (332)
T 2ft3_A           54 PDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI--P--PNLPSSLVE  127 (332)
T ss_dssp             TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC--C--SSCCTTCCE
T ss_pred             CCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc--C--ccccccCCE
Confidence            467777665332  33443 34566778888888777655  2222 2577888888877766310  0  012367888


Q ss_pred             EEeeeCCCCcee--ecCCCCCCceEEeccccc----cceeeecCCceeEEEEeCcccccceeccccCccCcEEEeecccc
Q 016710          202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEE----LQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI  275 (384)
Q Consensus       202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~----l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  275 (384)
                      |++.++......  .+..+++|+.|++.++.-    .........+|+.|+++++.....+..+  .++|++|+++++.+
T Consensus       128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKI  205 (332)
T ss_dssp             EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCC
T ss_pred             EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccc--cCCCCEEECCCCcC
Confidence            888776533211  245567888888877641    1111112226777777766533322222  37899999998876


Q ss_pred             chHHHHHHhccCCCcceEeecccccccc---cccCCCcccEEeccccccceee---cccCCCCceeEEecccccc
Q 016710          276 KDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVISF  344 (384)
Q Consensus       276 ~~~~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~~~  344 (384)
                      +... ...+..+++|+.|+++++..-..   ....+++|++|+++++. +..+   ...+++|++|++++|.++.
T Consensus       206 ~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          206 QAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             CccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCc
Confidence            5432 23456789999999998752221   23356899999999763 3334   3568999999999998754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.12  E-value=4.1e-11  Score=107.64  Aligned_cols=165  Identities=19%  Similarity=0.189  Sum_probs=104.8

Q ss_pred             hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCC--ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPR--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      .+++++|++..+.  ...+ ..+..+++|++|+++++.+. .+.  ...+++|++|+++++.+.... ...+..+++|+.
T Consensus        62 l~~L~~L~l~~n~--l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  137 (272)
T 3rfs_A           62 LPNVRYLALGGNK--LHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLTY  137 (272)
T ss_dssp             CTTCCEEECTTSC--CCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCCcEEECCCCC--CCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-HHHhccCCCCCE
Confidence            4789999886533  2233 35678999999999998776 222  236999999999999873211 123567899999


Q ss_pred             EEeeeCCCCceee--cCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHH
Q 016710          202 LSLQLCPGLKNLE--LSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEW  279 (384)
Q Consensus       202 L~L~~c~~~~~~~--i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  279 (384)
                      |++.+|.......  +..+++|+.|+++++. +..+.                   ...+..+++|+.|++.++.++.. 
T Consensus       138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------------~~~~~~l~~L~~L~L~~N~l~~~-  196 (272)
T 3rfs_A          138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLP-------------------EGVFDKLTQLKDLRLYQNQLKSV-  196 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-------------------TTTTTTCTTCCEEECCSSCCSCC-
T ss_pred             EECCCCccCccCHHHhccCccCCEEECCCCC-cCccC-------------------HHHhcCCccCCEEECCCCcCCcc-
Confidence            9999985332111  3456677777777763 11111                   11134566777777776665432 


Q ss_pred             HHHHhccCCCcceEeecccccccccccCCCcccEEeccc
Q 016710          280 LCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYD  318 (384)
Q Consensus       280 ~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~  318 (384)
                      ....+..+++|+.|++++++    +...+++|+.|.+..
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~  231 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWI  231 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHH
T ss_pred             CHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHH
Confidence            12334567777777777764    334456677666653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.11  E-value=2.6e-10  Score=103.44  Aligned_cols=98  Identities=20%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      ..++.+++..+.  ...++ .+..+++|++|+++++.+. .+....+++|+.|+++++.+..-  . -+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~--i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--S-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--G-GGTTCTTCCEEEC
T ss_pred             CcccEEEccCCC--cccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--h-hhccCCCCCEEEC
Confidence            456666554322  22333 2445666666666666554 22233566666666666665221  1 1445566666666


Q ss_pred             eeCCCCceeecCCCCCCceEEeccc
Q 016710          205 QLCPGLKNLELSGLTKLNKFEVCDA  229 (384)
Q Consensus       205 ~~c~~~~~~~i~~~~~L~~L~l~~~  229 (384)
                      .+|.......+..+++|+.|+++++
T Consensus       120 ~~n~i~~~~~l~~l~~L~~L~l~~n  144 (291)
T 1h6t_A          120 EHNGISDINGLVHLPQLESLYLGNN  144 (291)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCcCCCChhhcCCCCCCEEEccCC
Confidence            6553222112233445555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.10  E-value=4e-10  Score=98.98  Aligned_cols=191  Identities=12%  Similarity=0.001  Sum_probs=103.4

Q ss_pred             CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCee-ec-CC-Cc-cCCCCCCeEEeee-eecChHHHHHHHcCCCCc
Q 016710          126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLK-LE-SP-RS-VKLSSLTKLFLMR-VDATDLVLQSLLIGCPLI  199 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-l~-~~-~~-~~~~~L~~L~L~~-~~~~~~~l~~l~~~~p~L  199 (384)
                      ..+++|++....  ...+|. .+..+++|++|+++++. +. .+ .. ..+++|++|++++ +.+..-. ...+..+++|
T Consensus        31 ~~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred             CcccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence            367777775432  344444 34457777777777764 43 22 22 2577777777776 4442111 1124467777


Q ss_pred             cEEEeeeCCCCceeecCCCCCCc---eEEeccccccceee----ecCCcee-EEEEeCcccccceeccccCccCcEEEee
Q 016710          200 EYLSLQLCPGLKNLELSGLTKLN---KFEVCDAEELQRLC----IIAQDVQ-EVSIQGPLPFQCKFNLASCKFLKYLRFA  271 (384)
Q Consensus       200 e~L~L~~c~~~~~~~i~~~~~L~---~L~l~~~~~l~~~~----~~~p~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~L~  271 (384)
                      +.|++.++.......+..+++|+   .|+++++..+..+.    ..+++|+ .|+++++.....+...-..++|+.|++.
T Consensus       108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred             CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence            77777776433222234455665   77777763333322    1356777 7777665533222221122677777777


Q ss_pred             ccc-cchHHHHHHhccC-CCcceEeeccccccccccc-CCCcccEEecccccc
Q 016710          272 LTH-IKDEWLCNQISKF-PLLESLLIAGCDDLKSINI-SSRSLKLLEIYDCLR  321 (384)
Q Consensus       272 ~~~-~~~~~~~~l~~~~-p~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~c~~  321 (384)
                      ++. ++.- ....+.++ ++|+.|+++++. ++.+.. .+++|+.|.+.+++.
T Consensus       188 ~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          188 KNKYLTVI-DKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWT  238 (239)
T ss_dssp             TCTTCCEE-CTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC--
T ss_pred             CCCCcccC-CHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccC
Confidence            763 4421 12334556 777777777654 222222 356777777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=106.53  Aligned_cols=214  Identities=13%  Similarity=0.111  Sum_probs=143.0

Q ss_pred             cceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCCCCCcccCccc--cCCCCccEEEecCeeecCCCc-----
Q 016710           96 RLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEII--LCSNSIEILTLAGLKLESPRS-----  168 (384)
Q Consensus        96 ~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~l~~~~~-----  168 (384)
                      .++.+.+.-.    ......+..........++++|++..+.. ....|..+  ..+++|++|+++++.+.....     
T Consensus        65 ~l~~l~l~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           65 RVRRLTVGAA----QVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             CCCEEEECSC----CCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             ceeEEEEeCC----cCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence            4566655522    12224444545555557899999976442 23445555  678999999999987762111     


Q ss_pred             --cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce------eecCCCCCCceEEeccccc--ccee---
Q 016710          169 --VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN------LELSGLTKLNKFEVCDAEE--LQRL---  235 (384)
Q Consensus       169 --~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~------~~i~~~~~L~~L~l~~~~~--l~~~---  235 (384)
                        ..+++|++|+++++.+.... ...+..+++|+.|++++|.....      .....+++|+.|.+++|.-  +...   
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  218 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA  218 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred             HhhhccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence              25899999999999883211 12356789999999999874421      1234678999999999861  1221   


Q ss_pred             -eecCCceeEEEEeCcccccc-eeccccC---ccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc-ccccCCC
Q 016710          236 -CIIAQDVQEVSIQGPLPFQC-KFNLASC---KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK-SINISSR  309 (384)
Q Consensus       236 -~~~~p~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~-~~~~~~~  309 (384)
                       ....++|++|+++++..... +..+..+   ++|++|++++|.++.  +...+  +++|+.|+++++.--. .....++
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N~l~~~~~~~~l~  294 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSNRLNRAPQPDELP  294 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSCCCCSCCCTTSCC
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCCcCCCCchhhhCC
Confidence             22568999999998874443 3333444   799999999998762  22212  4899999999976322 2345568


Q ss_pred             cccEEecccc
Q 016710          310 SLKLLEIYDC  319 (384)
Q Consensus       310 ~L~~L~l~~c  319 (384)
                      +|++|++++.
T Consensus       295 ~L~~L~L~~N  304 (310)
T 4glp_A          295 EVDNLTLDGN  304 (310)
T ss_dssp             CCSCEECSST
T ss_pred             CccEEECcCC
Confidence            9999999854

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.08  E-value=3.1e-10  Score=113.20  Aligned_cols=164  Identities=18%  Similarity=0.123  Sum_probs=109.7

Q ss_pred             hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      ...++.|++..+.  ...++ .+..+++|+.|+|++|.+. .+....+++|+.|+|+++.+..-  . .+..+++|+.|+
T Consensus        42 L~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEE
Confidence            3678887775432  33444 4667889999999888766 33344788899999998887321  1 356788888888


Q ss_pred             eeeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHH
Q 016710          204 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC  281 (384)
Q Consensus       204 L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  281 (384)
                      |.+|.......+..+++|+.|++++|.  .+ .....+++|+.|+++++....... +..+++|+.|+|++|.+.+-   
T Consensus       116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l---  190 (605)
T 1m9s_A          116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL---  190 (605)
T ss_dssp             CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC---
T ss_pred             ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC---
Confidence            888764433334567788888888875  22 111256778888887766433222 66778888888887776542   


Q ss_pred             HHhccCCCcceEeecccc
Q 016710          282 NQISKFPLLESLLIAGCD  299 (384)
Q Consensus       282 ~l~~~~p~L~~L~l~~c~  299 (384)
                      ..+..+++|+.|+++++.
T Consensus       191 ~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          191 RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             GGGTTCTTCSEEECCSEE
T ss_pred             hHHccCCCCCEEEccCCc
Confidence            235667888888887765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.08  E-value=9.5e-11  Score=107.40  Aligned_cols=201  Identities=14%  Similarity=0.071  Sum_probs=131.7

Q ss_pred             ccCccccCCCCccEEEecCeeec---CCCcc--------CCCCCCeEEeeeeecChHHHHHH-HcCCCCccEEEeeeCCC
Q 016710          142 NLPEIILCSNSIEILTLAGLKLE---SPRSV--------KLSSLTKLFLMRVDATDLVLQSL-LIGCPLIEYLSLQLCPG  209 (384)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~l~---~~~~~--------~~~~L~~L~L~~~~~~~~~l~~l-~~~~p~Le~L~L~~c~~  209 (384)
                      .+|..+...  |+.|+++++.+.   .+...        .+++|++|+++++.+.......+ +..+++|+.|+++++..
T Consensus        56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  133 (312)
T 1wwl_A           56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW  133 (312)
T ss_dssp             CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred             ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence            445544333  777777776553   22222        48999999999998843222222 36789999999998754


Q ss_pred             Ccee-ecCC-----CCCCceEEecccc--ccc-eeeecCCceeEEEEeCccccc---c--eeccccCccCcEEEeecccc
Q 016710          210 LKNL-ELSG-----LTKLNKFEVCDAE--ELQ-RLCIIAQDVQEVSIQGPLPFQ---C--KFNLASCKFLKYLRFALTHI  275 (384)
Q Consensus       210 ~~~~-~i~~-----~~~L~~L~l~~~~--~l~-~~~~~~p~L~~L~l~~~~~~~---~--~~~~~~~~~L~~L~L~~~~~  275 (384)
                      .... .+..     .++|+.|+++++.  .+. ......++|+.|+++++....   .  ...+..+++|++|+++++.+
T Consensus       134 ~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l  213 (312)
T 1wwl_A          134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM  213 (312)
T ss_dssp             SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred             cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence            3211 1111     2799999999886  211 112357899999998876221   1  12236789999999999987


Q ss_pred             ch--HHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccceeecccC-CCCceeEEeccccccc
Q 016710          276 KD--EWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEVKIAA-SSLSIFKYSGDVISFQ  345 (384)
Q Consensus       276 ~~--~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~~~~~-~~L~~L~l~~~~~~~~  345 (384)
                      +.  .....++..+++|+.|+++++..-...    ....++|++|+++++. +..++... ++|++|++++|.++..
T Consensus       214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSC
T ss_pred             cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCC
Confidence            73  333456678899999999987633211    2234799999998763 33444332 6899999999987544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.07  E-value=7.1e-10  Score=110.00  Aligned_cols=82  Identities=16%  Similarity=0.174  Sum_probs=52.6

Q ss_pred             ccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc--c---cccCCCcccEEeccccccc---e-eecccCC
Q 016710          260 ASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK--S---INISSRSLKLLEIYDCLRL---V-EVKIAAS  330 (384)
Q Consensus       260 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~--~---~~~~~~~L~~L~l~~c~~l---~-~~~~~~~  330 (384)
                      ..+++|++|+++++.+++. ....+..+++|+.|+++++..-.  .   ....+++|++|+++++.--   . .....++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            5678999999999987753 23456789999999999975221  2   1245688999998865321   1 1123344


Q ss_pred             CCceeEEecccc
Q 016710          331 SLSIFKYSGDVI  342 (384)
Q Consensus       331 ~L~~L~l~~~~~  342 (384)
                      +|++|++++|.+
T Consensus       429 ~L~~L~l~~n~l  440 (562)
T 3a79_B          429 SILVLNLSSNML  440 (562)
T ss_dssp             TCCEEECCSSCC
T ss_pred             cCCEEECCCCCC
Confidence            555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.07  E-value=1.4e-10  Score=117.56  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=57.3

Q ss_pred             cCCceeEEEEeCccccccee-ccccCccCcEEEeeccccchHHH-------HHHhccCCCcceEeeccccccccc----c
Q 016710          238 IAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWL-------CNQISKFPLLESLLIAGCDDLKSI----N  305 (384)
Q Consensus       238 ~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~-------~~l~~~~p~L~~L~l~~c~~l~~~----~  305 (384)
                      .+++|+.|+++++....... .+..+++|+.|+++++.++.-..       ...+.++++|+.|+++++. +..+    .
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~  556 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF  556 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc
Confidence            34566666666654322221 24556777777777666543110       0124566777777777654 2222    2


Q ss_pred             cCCCcccEEeccccccceeec----ccCCCCceeEEeccccc
Q 016710          306 ISSRSLKLLEIYDCLRLVEVK----IAASSLSIFKYSGDVIS  343 (384)
Q Consensus       306 ~~~~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~~~  343 (384)
                      ..+++|++|++++. .+..++    ..+++|++|++++|.++
T Consensus       557 ~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          557 KDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence            34467777777643 233222    45677888888777653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.07  E-value=4.7e-10  Score=116.63  Aligned_cols=79  Identities=13%  Similarity=0.036  Sum_probs=50.4

Q ss_pred             ccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccc--cce-eecccCCCCceeE
Q 016710          263 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFK  336 (384)
Q Consensus       263 ~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L~  336 (384)
                      ++|+.|+++++.+... ....+..+++|+.|+++++..-.   .....+++|++|+++++.  ++. .....+++|++|+
T Consensus       266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            5677777777665432 13345667888888888765221   122345788888888653  221 2335688899999


Q ss_pred             Eecccc
Q 016710          337 YSGDVI  342 (384)
Q Consensus       337 l~~~~~  342 (384)
                      +++|.+
T Consensus       345 L~~N~i  350 (844)
T 3j0a_A          345 LQKNHI  350 (844)
T ss_dssp             CCSCCC
T ss_pred             CCCCCC
Confidence            988865

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.07  E-value=8.1e-11  Score=110.21  Aligned_cols=196  Identities=16%  Similarity=0.038  Sum_probs=91.6

Q ss_pred             cCCC-CccEEEecCeeecCCCc--c-C-----CCCCCeEEeeeeecCh---HHHHHHHcCC-CCccEEEeeeCCCCcee-
Q 016710          148 LCSN-SIEILTLAGLKLESPRS--V-K-----LSSLTKLFLMRVDATD---LVLQSLLIGC-PLIEYLSLQLCPGLKNL-  213 (384)
Q Consensus       148 ~~~~-~L~~L~L~~~~l~~~~~--~-~-----~~~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~L~~c~~~~~~-  213 (384)
                      ..++ +|++|+|++|.+.....  . .     +++|++|+|++|.+++   ..+...+..+ ++|+.|++++|...... 
T Consensus        47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            3445 56666666655541111  1 1     2566666666666522   2333334444 56666666665422110 


Q ss_pred             -e----cCC-CCCCceEEecccccc----ceee---ecC-CceeEEEEeCccccccee-----ccccC-ccCcEEEeecc
Q 016710          214 -E----LSG-LTKLNKFEVCDAEEL----QRLC---IIA-QDVQEVSIQGPLPFQCKF-----NLASC-KFLKYLRFALT  273 (384)
Q Consensus       214 -~----i~~-~~~L~~L~l~~~~~l----~~~~---~~~-p~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~L~~~  273 (384)
                       .    +.. .++|+.|+++++.-.    ..+.   ... ++|++|+++++.......     .+..+ ++|++|++++|
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence             0    111 136666666665310    0110   112 266666666654221111     12233 36777777766


Q ss_pred             ccchHH---HHHHhcc-CCCcceEeeccccccc-------ccccCCCcccEEeccccc--c-----ceee---cccCCCC
Q 016710          274 HIKDEW---LCNQISK-FPLLESLLIAGCDDLK-------SINISSRSLKLLEIYDCL--R-----LVEV---KIAASSL  332 (384)
Q Consensus       274 ~~~~~~---~~~l~~~-~p~L~~L~l~~c~~l~-------~~~~~~~~L~~L~l~~c~--~-----l~~~---~~~~~~L  332 (384)
                      .+++..   +...+.. .++|+.|+++++..-.       ......++|++|+++++.  .     +..+   ...+++|
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L  286 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI  286 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred             CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence            655432   2222223 3467777777654211       111234667777776543  1     1111   1345556


Q ss_pred             ceeEEeccccc
Q 016710          333 SIFKYSGDVIS  343 (384)
Q Consensus       333 ~~L~l~~~~~~  343 (384)
                      +.|++++|.+.
T Consensus       287 ~~LdL~~N~l~  297 (362)
T 3goz_A          287 ILVDKNGKEIH  297 (362)
T ss_dssp             EEECTTSCBCC
T ss_pred             EEEecCCCcCC
Confidence            66666666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.06  E-value=6.9e-10  Score=112.56  Aligned_cols=148  Identities=13%  Similarity=0.106  Sum_probs=66.6

Q ss_pred             CCCCccEEEeeeCCCCce--eecCCCCCCceEEecccc-ccceee------ecCCceeEEEEeCcccccc-eeccccCcc
Q 016710          195 GCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE-ELQRLC------IIAQDVQEVSIQGPLPFQC-KFNLASCKF  264 (384)
Q Consensus       195 ~~p~Le~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~-~l~~~~------~~~p~L~~L~l~~~~~~~~-~~~~~~~~~  264 (384)
                      .+++|+.|++.++.....  ..+..+++|+.|+++++. ....+.      ...++|+.|+++++..... +..+..+++
T Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            455556665555432211  112345566666666543 111111      0113455555544432111 112344566


Q ss_pred             CcEEEeeccccchHHHHHHhccCCCcceEeecccccc-----------------------------cccccCCCcccEEe
Q 016710          265 LKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL-----------------------------KSINISSRSLKLLE  315 (384)
Q Consensus       265 L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l-----------------------------~~~~~~~~~L~~L~  315 (384)
                      |+.|+++++.+........+.++++|+.|+++++...                             ......+++|++|+
T Consensus       407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~  486 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD  486 (680)
T ss_dssp             CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred             CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence            6666666555432211123344555555555554311                             11112335666666


Q ss_pred             ccccccceee----cccCCCCceeEEeccccc
Q 016710          316 IYDCLRLVEV----KIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       316 l~~c~~l~~~----~~~~~~L~~L~l~~~~~~  343 (384)
                      ++++. +..+    ...+++|++|++++|.+.
T Consensus       487 Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          487 LSNNN-IANINDDMLEGLEKLEILDLQHNNLA  517 (680)
T ss_dssp             CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred             CCCCC-CCcCChhhhccccccCEEeCCCCCcc
Confidence            66542 2222    245677777777777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.06  E-value=7.6e-10  Score=108.60  Aligned_cols=172  Identities=10%  Similarity=0.021  Sum_probs=81.4

Q ss_pred             CCCCCCeEEeeeeec--ChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccc---cceeeecCCceeE
Q 016710          170 KLSSLTKLFLMRVDA--TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQE  244 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~---l~~~~~~~p~L~~  244 (384)
                      .+++|+.+++.++.+  ....+...+. .++|+.|.+.++..........+++|+.|+++++.-   ........++|++
T Consensus       274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  352 (520)
T 2z7x_B          274 SLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET  352 (520)
T ss_dssp             CCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred             cCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence            355555555555544  2122222221 234666666655432211113455666666666541   1111124556666


Q ss_pred             EEEeCccccc---ceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCC-CcccEEeccccc
Q 016710          245 VSIQGPLPFQ---CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISS-RSLKLLEIYDCL  320 (384)
Q Consensus       245 L~l~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~-~~L~~L~l~~c~  320 (384)
                      |+++++....   .+..+..+++|++|+++++.+........+..+++|+.|+++++.....+.... ++|++|+++++.
T Consensus       353 L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~  432 (520)
T 2z7x_B          353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK  432 (520)
T ss_dssp             EECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC
T ss_pred             EEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc
Confidence            6666554322   112244566666666666655432112234445666666666654322222222 466666666542


Q ss_pred             cceeec---ccCCCCceeEEeccccc
Q 016710          321 RLVEVK---IAASSLSIFKYSGDVIS  343 (384)
Q Consensus       321 ~l~~~~---~~~~~L~~L~l~~~~~~  343 (384)
                       +..++   ..+++|++|++++|.+.
T Consensus       433 -l~~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          433 -IKSIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             -CCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -ccccchhhhcCCCCCEEECCCCcCC
Confidence             22222   24666666666666543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.06  E-value=4.4e-10  Score=95.75  Aligned_cols=78  Identities=21%  Similarity=0.226  Sum_probs=34.9

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      ++++++++..+.  ...+| .+..+++|++|++++|.+... ....+++|++|+++++.+....... +..+++|+.|++
T Consensus        44 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANIN--VTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSC--CSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEEC
T ss_pred             CCccEEeccCCC--ccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEe
Confidence            456666665432  22334 344555666666655544322 1224555555555555442211111 233444444444


Q ss_pred             eeC
Q 016710          205 QLC  207 (384)
Q Consensus       205 ~~c  207 (384)
                      .+|
T Consensus       120 s~n  122 (197)
T 4ezg_A          120 SHS  122 (197)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.06  E-value=7.9e-10  Score=94.14  Aligned_cols=148  Identities=19%  Similarity=0.144  Sum_probs=98.5

Q ss_pred             CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeC
Q 016710          170 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG  249 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~  249 (384)
                      .+++|+.|+++++.+.+-.   -+..+++|+.|++.+|.......+..+++|+.|+++++                    
T Consensus        42 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n--------------------   98 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK--------------------   98 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT--------------------
T ss_pred             hcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC--------------------
Confidence            5788888988888773211   25667888888888873222113334445555555544                    


Q ss_pred             ccccc-ceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc--cCCCcccEEecccccccee--
Q 016710          250 PLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYDCLRLVE--  324 (384)
Q Consensus       250 ~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~c~~l~~--  324 (384)
                       .... ....+..+++|++|+++++.+++.. ...+..+++|+.|++++|..+..+.  ..+++|++|+++++. +..  
T Consensus        99 -~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~  175 (197)
T 4ezg_A           99 -DVTSDKIPNLSGLTSLTLLDISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR  175 (197)
T ss_dssp             -TCBGGGSCCCTTCTTCCEEECCSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT
T ss_pred             -ccCcccChhhcCCCCCCEEEecCCccCcHh-HHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH
Confidence             3221 2234667899999999999887644 3455789999999999987444332  346899999998763 332  


Q ss_pred             ecccCCCCceeEEeccccc
Q 016710          325 VKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       325 ~~~~~~~L~~L~l~~~~~~  343 (384)
                      ....+++|++|++++|++.
T Consensus       176 ~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TGGGCSSCCEEEECBC---
T ss_pred             HhccCCCCCEEEeeCcccC
Confidence            3467999999999999764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.06  E-value=7.2e-10  Score=100.48  Aligned_cols=142  Identities=18%  Similarity=0.156  Sum_probs=90.7

Q ss_pred             CCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEec
Q 016710          149 CSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVC  227 (384)
Q Consensus       149 ~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~  227 (384)
                      .+++|+.|+++++.+. .+....+++|++|+++++.+.+..  . +..+++|+.|++.++.......+..+++|+.|+++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE  120 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence            4788999999998776 444447999999999999883321  1 77899999999998864433345667888888888


Q ss_pred             ccccccee--eecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          228 DAEELQRL--CIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       228 ~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      ++. +..+  ....++|+.|+++++..... ..+..+++|+.|+++++.+++..  . +..+++|+.|+++++
T Consensus       121 ~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          121 HNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             TSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSS
T ss_pred             CCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCC
Confidence            875 1111  11345666666655543222 23445566666666655544321  1 445566666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.05  E-value=7.2e-10  Score=99.28  Aligned_cols=186  Identities=17%  Similarity=0.126  Sum_probs=95.8

Q ss_pred             CcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CC--CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          128 VKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP--RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       128 l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      .+.+++.  ......+|..+  .++|++|+++++.+. .+  ....+++|++|+++++.+..-. ...+..+++|+.|++
T Consensus        18 ~~~l~~~--~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           18 KNSVDCS--SKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWV   92 (270)
T ss_dssp             TTEEECT--TSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEEC
T ss_pred             CCEEEcc--CCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEEC
Confidence            4444442  33344555544  256788888877665 22  1225777888888777652111 122355677777777


Q ss_pred             eeCCCCcee--ecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccce-eccccCccCcEEEeeccccchHHHH
Q 016710          205 QLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLC  281 (384)
Q Consensus       205 ~~c~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~  281 (384)
                      .++......  .+..+++|+.|+++++.                     ..... ..+..+++|++|+++++.++... .
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~---------------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~  150 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQ---------------------LKSLPPRVFDSLTKLTYLSLGYNELQSLP-K  150 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSC---------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCc---------------------cCeeCHHHhCcCcCCCEEECCCCcCCccC-H
Confidence            766432111  12334555666555543                     11111 12345566666666666544211 1


Q ss_pred             HHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccceee----cccCCCCceeEEecccc
Q 016710          282 NQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEV----KIAASSLSIFKYSGDVI  342 (384)
Q Consensus       282 ~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~  342 (384)
                      ..+..+++|+.|+++++. +..+    ...+++|++|+++++ .+..+    ...+++|+.|++++|++
T Consensus       151 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          151 GVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence            224456666666666653 1111    123466677776654 22222    23466777777777764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.04  E-value=9.2e-10  Score=98.58  Aligned_cols=168  Identities=18%  Similarity=0.129  Sum_probs=98.0

Q ss_pred             CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec-CCC-c-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE-SPR-S-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~-~~~-~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      .++++|++....  ...++. .+..+++|++|+++++.+. .+. . ..+++|++|+++++.+..-. ...+..+++|+.
T Consensus        37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred             CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence            578999886433  445554 5667999999999998776 332 2 36999999999999873211 123567899999


Q ss_pred             EEeeeCCCCcee--ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccccccee-ccccCccCcEEEeeccc
Q 016710          202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTH  274 (384)
Q Consensus       202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~  274 (384)
                      |++.++......  .+..+++|+.|+++++. +..+.    ...++|+.|+++++....... .+..+++|+.|++.++.
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            999987543221  23456788888888774 21111    123455555555443222111 13344555555555444


Q ss_pred             cchHHHHHHhccCCCcceEeeccc
Q 016710          275 IKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       275 ~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      ++.- ....+..+++|+.|+++++
T Consensus       193 l~~~-~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          193 LKRV-PEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CSCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CCcC-CHHHhccccCCCEEEecCC
Confidence            3321 1112334445555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.04  E-value=7e-10  Score=115.36  Aligned_cols=212  Identities=18%  Similarity=0.158  Sum_probs=117.6

Q ss_pred             CCCcEEEEEeCCCCCccc-CccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      .++++|++..+.  ...+ +..+..+++|+.|+|+++.+.  .+.. ..+++|++|+|+++.++... ...+..+++|+.
T Consensus       266 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~  342 (844)
T 3j0a_A          266 SSVRHLDLSHGF--VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAY  342 (844)
T ss_dssp             SCCCEEECTTCC--CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCE
T ss_pred             CCccEEECCCCc--ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCE
Confidence            466777664322  2222 344556788888888887655  2322 36788888888888763211 112456788888


Q ss_pred             EEeeeCCCCc--eeecCCCCCCceEEeccccccceeeecCCceeEEEEeCccccccee----------------------
Q 016710          202 LSLQLCPGLK--NLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF----------------------  257 (384)
Q Consensus       202 L~L~~c~~~~--~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~----------------------  257 (384)
                      |++.++....  ...+..+++|+.|+++++. +..+. ..|+|+.|.++++.....+.                      
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~  420 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH-FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY  420 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCS-SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCC-CCccc-CCCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence            8888774321  1123456788888888774 22222 25667777776654221110                      


Q ss_pred             ccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc--------ccccCCCcccEEeccccccce----ee
Q 016710          258 NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK--------SINISSRSLKLLEIYDCLRLV----EV  325 (384)
Q Consensus       258 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~--------~~~~~~~~L~~L~l~~c~~l~----~~  325 (384)
                      .+..+++|+.|+++++.++.......+..+++|+.|+++++..-.        .....+++|++|+++++ .+.    ..
T Consensus       421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~  499 (844)
T 3j0a_A          421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGV  499 (844)
T ss_dssp             HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTS
T ss_pred             hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccChhH
Confidence            022455666666655554321111122335566666666543110        11223467777777754 222    22


Q ss_pred             cccCCCCceeEEeccccc
Q 016710          326 KIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       326 ~~~~~~L~~L~l~~~~~~  343 (384)
                      ...+++|++|++++|.++
T Consensus       500 ~~~l~~L~~L~Ls~N~l~  517 (844)
T 3j0a_A          500 FSHLTALRGLSLNSNRLT  517 (844)
T ss_dssp             SSSCCSCSEEEEESCCCS
T ss_pred             ccchhhhheeECCCCCCC
Confidence            356899999999999774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.02  E-value=3.4e-09  Score=102.19  Aligned_cols=75  Identities=16%  Similarity=0.093  Sum_probs=42.8

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      +++++|++..+.  ...+| .+..+++|++|+++++.+. .+.  ..++|++|+++++.+..  +. -+..+++|+.|++
T Consensus       131 ~~L~~L~L~~n~--l~~lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQ--LEKLP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSC--CSSCC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCC--CCCCc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Cc-cccCCCCCCEEEC
Confidence            477777775433  33466 4666777888877776554 121  23466777776666522  11 1345566666666


Q ss_pred             eeCC
Q 016710          205 QLCP  208 (384)
Q Consensus       205 ~~c~  208 (384)
                      .+|.
T Consensus       203 ~~N~  206 (454)
T 1jl5_A          203 DNNS  206 (454)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            5553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.01  E-value=3.9e-10  Score=112.41  Aligned_cols=161  Identities=17%  Similarity=0.186  Sum_probs=89.8

Q ss_pred             CCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEecc
Q 016710          150 SNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCD  228 (384)
Q Consensus       150 ~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~  228 (384)
                      +++|+.|+++++.+. .+....+++|+.|+|+++.+....-   +..+++|+.|+|.+|.......+..+++|+.|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence            566666666666554 3333356777777777666622111   556677777777766433222344566777777776


Q ss_pred             cc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc--
Q 016710          229 AE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI--  304 (384)
Q Consensus       229 ~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~--  304 (384)
                      +.  .+.. ...+++|+.|+++++..... ..+..+++|+.|+|++|.+.+..  . +..+++|+.|+|+++. +..+  
T Consensus       119 N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-i~~l~~  192 (605)
T 1m9s_A          119 NGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNH-ISDLRA  192 (605)
T ss_dssp             SCCCCCGG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCBCGG
T ss_pred             CCCCCCcc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch--h-hccCCCCCEEECcCCC-CCCChH
Confidence            64  2111 12456677777766553332 23555667777777666655422  1 5566777777776654 2111  


Q ss_pred             ccCCCcccEEecccc
Q 016710          305 NISSRSLKLLEIYDC  319 (384)
Q Consensus       305 ~~~~~~L~~L~l~~c  319 (384)
                      ...+++|+.|+|.++
T Consensus       193 l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GTTCTTCSEEECCSE
T ss_pred             HccCCCCCEEEccCC
Confidence            223466777776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.00  E-value=6.9e-10  Score=103.84  Aligned_cols=197  Identities=14%  Similarity=0.028  Sum_probs=133.7

Q ss_pred             cCccccCCCCccEEEecCeeecCCC------c-cCCC-CCCeEEeeeeecCh---HHHHHHHcCC-CCccEEEeeeCCCC
Q 016710          143 LPEIILCSNSIEILTLAGLKLESPR------S-VKLS-SLTKLFLMRVDATD---LVLQSLLIGC-PLIEYLSLQLCPGL  210 (384)
Q Consensus       143 lp~~l~~~~~L~~L~L~~~~l~~~~------~-~~~~-~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~L~~c~~~  210 (384)
                      +|..+...++|++|++++|.+....      . ..++ +|++|+|++|.+++   ..+...+..+ +.|++|++++|...
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            3444444667999999999877322      1 2578 89999999999843   3455555554 99999999998643


Q ss_pred             cee------ecCCC-CCCceEEeccccccceeee--------c-CCceeEEEEeCcccccce-----eccccCc-cCcEE
Q 016710          211 KNL------ELSGL-TKLNKFEVCDAEELQRLCI--------I-AQDVQEVSIQGPLPFQCK-----FNLASCK-FLKYL  268 (384)
Q Consensus       211 ~~~------~i~~~-~~L~~L~l~~~~~l~~~~~--------~-~p~L~~L~l~~~~~~~~~-----~~~~~~~-~L~~L  268 (384)
                      ...      .+..+ ++|+.|+++++. +.....        . +++|++|+++++......     ..+...+ +|++|
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence            211      12233 699999999996 222111        1 359999999987633211     1233444 99999


Q ss_pred             EeeccccchH---HHHHHhccCC-CcceEeeccccccc----ccc----cCCCcccEEeccccccce--------eeccc
Q 016710          269 RFALTHIKDE---WLCNQISKFP-LLESLLIAGCDDLK----SIN----ISSRSLKLLEIYDCLRLV--------EVKIA  328 (384)
Q Consensus       269 ~L~~~~~~~~---~~~~l~~~~p-~L~~L~l~~c~~l~----~~~----~~~~~L~~L~l~~c~~l~--------~~~~~  328 (384)
                      ++++|.+++.   .+...+..++ +|+.|+++++..-.    .+.    ...++|++|+++++. +.        .....
T Consensus       173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~  251 (362)
T 3goz_A          173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDS  251 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTT
T ss_pred             eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhc
Confidence            9999987653   3445566674 99999999986222    011    123699999999753 22        22356


Q ss_pred             CCCCceeEEeccc
Q 016710          329 ASSLSIFKYSGDV  341 (384)
Q Consensus       329 ~~~L~~L~l~~~~  341 (384)
                      +++|++|++++|.
T Consensus       252 l~~L~~L~L~~n~  264 (362)
T 3goz_A          252 LKHLQTVYLDYDI  264 (362)
T ss_dssp             TTTCSEEEEEHHH
T ss_pred             CCCccEEEeccCC
Confidence            8999999999997

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.91  E-value=2.4e-09  Score=96.10  Aligned_cols=200  Identities=17%  Similarity=0.143  Sum_probs=129.4

Q ss_pred             CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      +++++|++..  .....++. .+..+++|++|+++++.+.  .+. ...+++|++|+++++.+..... ..+..+++|+.
T Consensus        28 ~~l~~L~ls~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTT--CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCE
T ss_pred             CCccEEECCC--CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccE
Confidence            4688887743  33444554 5567899999999998765  222 3368999999999988732211 22567899999


Q ss_pred             EEeeeCCCCc--eeecCCCCCCceEEecccc--c--cceeeecCCceeEEEEeCcccccce-eccccCccCc----EEEe
Q 016710          202 LSLQLCPGLK--NLELSGLTKLNKFEVCDAE--E--LQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLK----YLRF  270 (384)
Q Consensus       202 L~L~~c~~~~--~~~i~~~~~L~~L~l~~~~--~--l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~----~L~L  270 (384)
                      |++.++....  ...+..+++|+.|+++++.  .  +.......++|+.|+++++...... ..+..+++|+    .|++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            9998875432  2235677899999999885  1  2222335789999999887643322 2344455555    7888


Q ss_pred             eccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccceeecccCCCCcee
Q 016710          271 ALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEVKIAASSLSIF  335 (384)
Q Consensus       271 ~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L  335 (384)
                      +++.++.-.  .......+|+.|+++++. ++.+    ...+++|++|++++..    +...|+.++.|
T Consensus       185 s~n~l~~~~--~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~----~~c~c~~l~~l  246 (276)
T 2z62_A          185 SLNPMNFIQ--PGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP----WDCSCPRIDYL  246 (276)
T ss_dssp             CSSCCCEEC--TTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC----BCCCTTTTHHH
T ss_pred             CCCcccccC--ccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc----ccccCCchHHH
Confidence            888765321  112234589999999876 3222    2346899999998532    22445555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.90  E-value=2.6e-09  Score=95.36  Aligned_cols=144  Identities=13%  Similarity=0.085  Sum_probs=87.8

Q ss_pred             ccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEE
Q 016710          147 ILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE  225 (384)
Q Consensus       147 l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~  225 (384)
                      +..+++|++|+++++.+. .+....+++|+.|+++++.+.+-.-   +..+++|+.|+++++.......+.. ++|+.|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~  112 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF  112 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence            345788888888887665 3433468888888888887732211   6678888888888875332112223 5777777


Q ss_pred             ecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710          226 VCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       226 l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~  299 (384)
                      ++++.  .+.. ...+++|+.|+++++...... .+..+++|+.|+++++.+++.   ..+..+++|+.|++++++
T Consensus       113 L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          113 LDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             ccCCccCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence            77764  2111 114556666666665533322 355566777777766665543   345566667777766654

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.85  E-value=9.1e-10  Score=72.31  Aligned_cols=40  Identities=20%  Similarity=0.293  Sum_probs=33.8

Q ss_pred             CccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhc
Q 016710            6 HIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWH   45 (384)
Q Consensus         6 ~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~   45 (384)
                      ..+.++.||+||+.+||+||+.+|+++++.|||+|+++..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4566889999999999999999999999999999998643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.84  E-value=6.1e-09  Score=92.13  Aligned_cols=157  Identities=17%  Similarity=0.108  Sum_probs=77.2

Q ss_pred             CCCCcccCccccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710          137 GNPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL  213 (384)
Q Consensus       137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~  213 (384)
                      +.....+|..+.  ++++.|+++++.+.  .+. ...+++|++|+|+++.+.... ...+..+++|+.|++.++......
T Consensus        23 ~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~   99 (251)
T 3m19_A           23 GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLP   99 (251)
T ss_dssp             TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCC
T ss_pred             CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccC
Confidence            333455665443  57788888777665  121 225777888888777662211 122455677777777766433211


Q ss_pred             --ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccccccee-ccccCccCcEEEeeccccchHHHHHHhcc
Q 016710          214 --ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISK  286 (384)
Q Consensus       214 --~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  286 (384)
                        .+..+++|+.|+++++. +..+.    ...++|+.|+++++....... .+..+++|+.|++.++.++.-. ...+..
T Consensus       100 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~  177 (251)
T 3m19_A          100 LGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDR  177 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTT
T ss_pred             hhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HHHHhC
Confidence              12345566666666653 11111    123455555554443222221 2334455555555555433211 122334


Q ss_pred             CCCcceEeeccc
Q 016710          287 FPLLESLLIAGC  298 (384)
Q Consensus       287 ~p~L~~L~l~~c  298 (384)
                      +++|+.|+++++
T Consensus       178 l~~L~~L~l~~N  189 (251)
T 3m19_A          178 LGKLQTITLFGN  189 (251)
T ss_dssp             CTTCCEEECCSC
T ss_pred             CCCCCEEEeeCC
Confidence            455555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.84  E-value=8.1e-09  Score=93.49  Aligned_cols=170  Identities=21%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             CcccCccccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-ec
Q 016710          140 RFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-EL  215 (384)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~-~i  215 (384)
                      ...+|..+.  ++++.|+++++.+.  .+ ....+++|+.|+|+++.++.-..   ...+++|+.|+++++...... .+
T Consensus        22 l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~   96 (290)
T 1p9a_G           22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLG   96 (290)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred             CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhh
Confidence            344554442  56777777776554  11 22256777777777766522110   145677777777766433111 22


Q ss_pred             CCCCCCceEEecccccccee----eecCCceeEEEEeCccccccee-ccccCccCcEEEeeccccchHHHHHHhccCCCc
Q 016710          216 SGLTKLNKFEVCDAEELQRL----CIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPLL  290 (384)
Q Consensus       216 ~~~~~L~~L~l~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L  290 (384)
                      ..+++|+.|+++++. +..+    ....++|+.|+++++.....+. .+..+++|+.|+++++.++.- ....+..+++|
T Consensus        97 ~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L  174 (290)
T 1p9a_G           97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENL  174 (290)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTC
T ss_pred             ccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCC
Confidence            345677777777664 1111    1245677777777665333222 245677788888877766531 12344567788


Q ss_pred             ceEeecccccccccc---cCCCcccEEecc
Q 016710          291 ESLLIAGCDDLKSIN---ISSRSLKLLEIY  317 (384)
Q Consensus       291 ~~L~l~~c~~l~~~~---~~~~~L~~L~l~  317 (384)
                      +.|+++++. +..+.   ...++|++|.+.
T Consensus       175 ~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~  203 (290)
T 1p9a_G          175 DTLLLQENS-LYTIPKGFFGSHLLPFAFLH  203 (290)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCCCSEEECC
T ss_pred             CEEECCCCc-CCccChhhcccccCCeEEeC
Confidence            888887754 22222   233567777776

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.84  E-value=1.7e-08  Score=93.87  Aligned_cols=209  Identities=10%  Similarity=-0.008  Sum_probs=120.1

Q ss_pred             CCCcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec--CC-Cc-cCCCCCCeE-EeeeeecChHHHHHHHcCCCCc
Q 016710          126 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE--SP-RS-VKLSSLTKL-FLMRVDATDLVLQSLLIGCPLI  199 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~--~~-~~-~~~~~L~~L-~L~~~~~~~~~l~~l~~~~p~L  199 (384)
                      .++++|+|...  ....+|.. +..+++|++|+|+++.+.  .+ .. ..+++|+.+ .+.++.+..-. ...+..+++|
T Consensus        30 ~~l~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTC
T ss_pred             CCCCEEEccCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccc
Confidence            46777777643  35566664 346888888888887542  22 22 256666654 34444331100 1224567888


Q ss_pred             cEEEeeeCCCCceee--cCCCCCCceEEeccccccceeee-----cCCceeEEEEeCcccccceeccccCccCcEEEeec
Q 016710          200 EYLSLQLCPGLKNLE--LSGLTKLNKFEVCDAEELQRLCI-----IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFAL  272 (384)
Q Consensus       200 e~L~L~~c~~~~~~~--i~~~~~L~~L~l~~~~~l~~~~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~  272 (384)
                      +.|++.++.......  .....++..|++.++..+..+..     ....++.|.++++.............+|+.|.+.+
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred             ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence            888888775332211  12233666777766654444332     12357777777765433333333346677777764


Q ss_pred             c-ccchHHHHHHhccCCCcceEeeccccccccccc-CCCcccEEeccccccceeec--ccCCCCceeEEec
Q 016710          273 T-HIKDEWLCNQISKFPLLESLLIAGCDDLKSINI-SSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSG  339 (384)
Q Consensus       273 ~-~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~  339 (384)
                      + .++. .-...+..+++|+.|+++++. ++.+.. .+.+|++|.+.++..+..++  ...++|+.+++..
T Consensus       187 ~n~l~~-i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          187 NNNLEE-LPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             CTTCCC-CCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             CCcccC-CCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            3 3321 112345677888888888764 444433 35678888887777776555  4677788877754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.81  E-value=2.4e-09  Score=88.53  Aligned_cols=127  Identities=17%  Similarity=0.093  Sum_probs=64.2

Q ss_pred             CCccEEEecCeeec---CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710          151 NSIEILTLAGLKLE---SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  226 (384)
Q Consensus       151 ~~L~~L~L~~~~l~---~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l  226 (384)
                      ++|++|++++|.+.   .+.. ..+++|+.|+++++.+...   ..+..+++|+.|++++|.....              
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~--------------   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG--------------   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH--------------
Confidence            56777777776553   2222 2466666666666655221   2244455555555555432210              


Q ss_pred             ccccccceeeecCCceeEEEEeCcccccce--eccccCccCcEEEeeccccchHH--HHHHhccCCCcceEeecccc
Q 016710          227 CDAEELQRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDEW--LCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       227 ~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~--~~~l~~~~p~L~~L~l~~c~  299 (384)
                           ++.....+++|+.|+++++.....+  ..+..+++|+.|++.++.++...  ....+..+|+|+.|++++|.
T Consensus        87 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           87 -----LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             -----CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             -----HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence                 1111112444444444444322211  23455677777777776654321  12355667777777776664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.79  E-value=2.2e-08  Score=98.93  Aligned_cols=134  Identities=18%  Similarity=0.095  Sum_probs=77.9

Q ss_pred             hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      ..+++.|++..+.  ...+|..+  .++|++|+|+++.+. .+  ..+++|++|++++|.++.  +.. +  ..+|+.|+
T Consensus        58 ~~~L~~L~Ls~n~--L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L~  126 (571)
T 3cvr_A           58 INQFSELQLNRLN--LSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-L--PASLKHLD  126 (571)
T ss_dssp             HTTCSEEECCSSC--CSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-C--CTTCCEEE
T ss_pred             cCCccEEEeCCCC--CCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-h--hcCCCEEE
Confidence            4588888886543  34477655  378999999888776 33  457888888888887732  111 2  22788888


Q ss_pred             eeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeecccc
Q 016710          204 LQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI  275 (384)
Q Consensus       204 L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~  275 (384)
                      +++|.... +.. .+++|+.|+++++. +..+....++|+.|+++++.....+. +.  ++|+.|++++|.+
T Consensus       127 Ls~N~l~~-lp~-~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          127 VDNNQLTM-LPE-LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             CCSSCCSC-CCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC
T ss_pred             CCCCcCCC-CCC-cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC
Confidence            88774332 222 45677777777664 22222234455555555544222222 22  4555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.76  E-value=3.6e-09  Score=94.42  Aligned_cols=159  Identities=14%  Similarity=0.053  Sum_probs=99.6

Q ss_pred             CCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccc
Q 016710          151 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA  229 (384)
Q Consensus       151 ~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~  229 (384)
                      .+++.++++++.+. .+....+++|+.|+++++.+..-.   -+..+++|+.|++.+|.......+..+++|+.|+++++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            34455555555443 222336899999999999873221   25678999999999885443323667889999999988


Q ss_pred             c--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc-cccc
Q 016710          230 E--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK-SINI  306 (384)
Q Consensus       230 ~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~-~~~~  306 (384)
                      .  .+..+..  ++|+.|+++++...... .+..+++|+.|+++++.+++-   ..+..+++|+.|+++++..-. ....
T Consensus        96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~~~l~  169 (263)
T 1xeu_A           96 RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNTGGLT  169 (263)
T ss_dssp             CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBCTTST
T ss_pred             ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcchHHhc
Confidence            5  2222222  77777777776533322 356677777777777776543   235567777777777754211 1112


Q ss_pred             CCCcccEEeccc
Q 016710          307 SSRSLKLLEIYD  318 (384)
Q Consensus       307 ~~~~L~~L~l~~  318 (384)
                      .+++|+.|++.+
T Consensus       170 ~l~~L~~L~l~~  181 (263)
T 1xeu_A          170 RLKKVNWIDLTG  181 (263)
T ss_dssp             TCCCCCEEEEEE
T ss_pred             cCCCCCEEeCCC
Confidence            345666666664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.73  E-value=2e-09  Score=87.12  Aligned_cols=34  Identities=15%  Similarity=0.111  Sum_probs=17.8

Q ss_pred             CCccEEEecCeeec---CCCc-cCCCCCCeEEeeeeec
Q 016710          151 NSIEILTLAGLKLE---SPRS-VKLSSLTKLFLMRVDA  184 (384)
Q Consensus       151 ~~L~~L~L~~~~l~---~~~~-~~~~~L~~L~L~~~~~  184 (384)
                      ++|++|++++|.+.   .+.. ..+++|+.|+++++.+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l   54 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL   54 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC
Confidence            45666666665543   2222 2455555555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.72  E-value=2.2e-08  Score=88.49  Aligned_cols=168  Identities=16%  Similarity=0.134  Sum_probs=88.9

Q ss_pred             CCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee--ecCCCCCCceEEec
Q 016710          151 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVC  227 (384)
Q Consensus       151 ~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--~i~~~~~L~~L~l~  227 (384)
                      .+.+++++++..+. .|... .++|+.|+|+++.+..... ..+..+++|+.|+++++......  .+..+++|+.|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            45778888887665 33332 3789999999998732211 22567889999999887543211  13456677777777


Q ss_pred             cccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc---
Q 016710          228 DAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI---  304 (384)
Q Consensus       228 ~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~---  304 (384)
                      ++. +..+.                   ...+..+++|++|+++++.++.- ....+..+++|+.|+++++. +..+   
T Consensus        92 ~n~-l~~~~-------------------~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~  149 (251)
T 3m19_A           92 NNQ-LASLP-------------------LGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQ-LQSIPAG  149 (251)
T ss_dssp             TSC-CCCCC-------------------TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             CCc-ccccC-------------------hhHhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCc-CCccCHH
Confidence            664 11111                   01123345555555555544321 11223445555555555543 1111   


Q ss_pred             -ccCCCcccEEeccccc--cce-eecccCCCCceeEEecccc
Q 016710          305 -NISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVI  342 (384)
Q Consensus       305 -~~~~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L~l~~~~~  342 (384)
                       ....++|++|+++++.  ++. .....+++|++|++++|++
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence             1123556666665432  111 1223456666666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.71  E-value=4.6e-08  Score=96.58  Aligned_cols=173  Identities=15%  Similarity=0.086  Sum_probs=93.9

Q ss_pred             CCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccc
Q 016710          151 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA  229 (384)
Q Consensus       151 ~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~  229 (384)
                      .+|+.|+++++.+. .|... +++|++|+|+++.++.  +.   ..+++|+.|++++|.... +.. -..+|+.|+++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCC
Confidence            46777777776554 23222 4677777777776631  11   346777777777764322 111 1127777777776


Q ss_pred             cccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCC
Q 016710          230 EELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSR  309 (384)
Q Consensus       230 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~  309 (384)
                      . +..+....++|+.|+++++.....+.   .+++|+.|++++|.++.  +.. +.  ++|+.|+++++. ++.+..-..
T Consensus       131 ~-l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~~lp~~~~  200 (571)
T 3cvr_A          131 Q-LTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LESLPAVPV  200 (571)
T ss_dssp             C-CSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSSCCCCC-
T ss_pred             c-CCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CCchhhHHH
Confidence            4 11122145677777777665333221   35677777777776543  112 22  677777777654 222222112


Q ss_pred             cc-------cEEeccccccceeec---ccCCCCceeEEecccc
Q 016710          310 SL-------KLLEIYDCLRLVEVK---IAASSLSIFKYSGDVI  342 (384)
Q Consensus       310 ~L-------~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~  342 (384)
                      +|       +.|+++++ .+..++   ..+++|++|++++|++
T Consensus       201 ~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          201 RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence            55       77777654 222222   3477777777777765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.66  E-value=3.2e-08  Score=99.04  Aligned_cols=201  Identities=18%  Similarity=0.178  Sum_probs=95.9

Q ss_pred             CCCCCCeEEeeeeecC-hHHHHHHHcCCCCccEEEeeeCCCCce-eecCCCCCCceEEeccccccc----eeeecCCcee
Q 016710          170 KLSSLTKLFLMRVDAT-DLVLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDAEELQ----RLCIIAQDVQ  243 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~~-~~~l~~l~~~~p~Le~L~L~~c~~~~~-~~i~~~~~L~~L~l~~~~~l~----~~~~~~p~L~  243 (384)
                      .+++|+.|+++++.+. ...........+.|+.|++..+..... .....+++|+.+.+..+....    ......++++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            3555555555554431 111111122344555555544422211 112234566666665543111    1111344555


Q ss_pred             EEEEeCccccc-ceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccc
Q 016710          244 EVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYD  318 (384)
Q Consensus       244 ~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~  318 (384)
                      .++++.+.... ....+..++.|+.|++.++..........+..+++|+.|+++++. ++.+    ...+++|++|+|++
T Consensus       449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCC
Confidence            55555443211 112244567777777776654332223345667778888887764 2222    23457778887776


Q ss_pred             cc--cce-eecccCCCCceeEEeccccccceEE-E-EeeccCcceeeccCCcchhhhh
Q 016710          319 CL--RLV-EVKIAASSLSIFKYSGDVISFQLGA-I-TFSKSHLLFQTENSSSEWYTEH  371 (384)
Q Consensus       319 c~--~l~-~~~~~~~~L~~L~l~~~~~~~~~~~-l-~~~~~~~~~~~~~~~~~~~~~~  371 (384)
                      +.  ++. .....+++|++|++++|.++..... + .+...--.+..++++..|-|..
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            42  222 1224577788888877766332211 1 1111222355566666655543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.66  E-value=1.5e-07  Score=87.40  Aligned_cols=199  Identities=13%  Similarity=0.157  Sum_probs=130.2

Q ss_pred             CCCcccCccccCCCCccEEEecCeeec-CC-Cc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceee
Q 016710          138 NPRFNLPEIILCSNSIEILTLAGLKLE-SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE  214 (384)
Q Consensus       138 ~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~-~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~  214 (384)
                      ....++|..+  .+++++|+|+++.+. .+ .. ..+++|++|+|+++.+....-...+.++++|.++.+..+..+..+.
T Consensus        19 ~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~   96 (350)
T 4ay9_X           19 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN   96 (350)
T ss_dssp             TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred             CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence            3455677665  468999999998776 33 33 3799999999999976221111224567888887777666665543


Q ss_pred             ---cCCCCCCceEEecccc--cccee-eecCCceeEEEEeCcc-ccccee-ccccC-ccCcEEEeeccccchHHHHHHhc
Q 016710          215 ---LSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPL-PFQCKF-NLASC-KFLKYLRFALTHIKDEWLCNQIS  285 (384)
Q Consensus       215 ---i~~~~~L~~L~l~~~~--~l~~~-~~~~p~L~~L~l~~~~-~~~~~~-~~~~~-~~L~~L~L~~~~~~~~~~~~l~~  285 (384)
                         +..+++|+.|++.++.  .+... .....++..+.+.+.. ...... .+..+ ..++.|+++++.++.  +..-..
T Consensus        97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f  174 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAF  174 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSS
T ss_pred             chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhc
Confidence               3567899999999885  22221 1245677888887643 211111 12333 468889999888653  222223


Q ss_pred             cCCCcceEeecccccccccc----cCCCcccEEeccccccceeec-ccCCCCceeEEeccc
Q 016710          286 KFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLRLVEVK-IAASSLSIFKYSGDV  341 (384)
Q Consensus       286 ~~p~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~~~  341 (384)
                      ..++|++|.+.++..++.+.    ..+++|++|++++. .+..++ ....+|++|+..++.
T Consensus       175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTY  234 (350)
T ss_dssp             TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCT
T ss_pred             cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCC
Confidence            45789999998877666554    34589999999976 455555 346778888776653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.63  E-value=2.1e-08  Score=85.91  Aligned_cols=66  Identities=26%  Similarity=0.308  Sum_probs=37.8

Q ss_pred             CcccCccccCCCCccEEEecCeeec-CCC-c-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCC
Q 016710          140 RFNLPEIILCSNSIEILTLAGLKLE-SPR-S-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP  208 (384)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~l~-~~~-~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  208 (384)
                      ...+|..+  .++|++|+++++.+. .+. . ..+++|++|+++++.+..- ....+..+++|+.|++.++.
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCc
Confidence            44555443  457888888877665 222 1 2577777777777765211 11123456666777666653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.62  E-value=6.7e-08  Score=82.73  Aligned_cols=53  Identities=13%  Similarity=0.178  Sum_probs=22.7

Q ss_pred             ccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEecc
Q 016710          260 ASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIY  317 (384)
Q Consensus       260 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~  317 (384)
                      ..+++|+.|++.++.++.. ....+..+++|+.|++++++    +...+++|+.|.+.
T Consensus       121 ~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~L~~~  173 (208)
T 2o6s_A          121 DKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEW  173 (208)
T ss_dssp             TTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC----BCCCTTTTHHHHHH
T ss_pred             ccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCC----eecCCCCHHHHHHH
Confidence            3345555555554443321 11223444555555555542    22333445544443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.59  E-value=4.7e-07  Score=84.26  Aligned_cols=201  Identities=15%  Similarity=0.081  Sum_probs=112.9

Q ss_pred             hHHHHHHHHHhcccCCcccceeEEEEecCCCcCCCc-hhHHHHHHHH-HhCCCcEEEEEeCCCC--------CcccCccc
Q 016710           78 EIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICL-PYIDQCIFYA-LGCNVKELSLELLGNP--------RFNLPEII  147 (384)
Q Consensus        78 ~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~l~~~-~~~~l~~L~l~~~~~~--------~~~lp~~l  147 (384)
                      .+.+...+++.....  ..++.+.+..-.. .+... ..++.+...+ ..++++.|.+......        ...+...+
T Consensus        92 ~~~~~~~~fl~~~~~--~~v~~L~lg~~~~-~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll  168 (362)
T 2ra8_A           92 EGVNLMDKILKDKKL--PSLKQITIGXWGY-EGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL  168 (362)
T ss_dssp             TTCCHHHHHHHCTTG--GGCSEEEECCCCS-SSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH
T ss_pred             cHHHHHHHHhcCCCc--hhcceEEEccccc-CCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHH
Confidence            344455556655443  4677777763221 00011 1233333211 2379999988432111        11244455


Q ss_pred             cCCCCccEEEecCee-ecCCCccCCCCCCeEEeeeeecChHHHHHHHc-CCCCccEEEeeeCCC-------Cce----ee
Q 016710          148 LCSNSIEILTLAGLK-LESPRSVKLSSLTKLFLMRVDATDLVLQSLLI-GCPLIEYLSLQLCPG-------LKN----LE  214 (384)
Q Consensus       148 ~~~~~L~~L~L~~~~-l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~~p~Le~L~L~~c~~-------~~~----~~  214 (384)
                      ..+|+|++|.|+++. +..+. ...++|++|.|..+.++...+..+.. .+|+|+.|+|..+..       +..    +.
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             hcCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            678999999998873 33333 35899999999998888877777653 699999999864211       100    01


Q ss_pred             cCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHh---ccCCCcc
Q 016710          215 LSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQI---SKFPLLE  291 (384)
Q Consensus       215 i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~---~~~p~L~  291 (384)
                      ...+|+|+.|.+.+|.....                 ........+.+++|+.|+|+.+.+++.....+.   ..+++|+
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~-----------------~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~  310 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNV-----------------VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK  310 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHH-----------------HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred             cCCCCCcCEEeCCCCCCchH-----------------HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence            11234555555544421000                 000011123467888888887777776544443   3467888


Q ss_pred             eEeecccc
Q 016710          292 SLLIAGCD  299 (384)
Q Consensus       292 ~L~l~~c~  299 (384)
                      .|++++|.
T Consensus       311 ~L~L~~n~  318 (362)
T 2ra8_A          311 FINMKYNY  318 (362)
T ss_dssp             EEECCSBB
T ss_pred             EEECCCCc
Confidence            88887764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.58  E-value=1.2e-07  Score=78.17  Aligned_cols=102  Identities=20%  Similarity=0.124  Sum_probs=59.4

Q ss_pred             CCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc----ccccCCCcccEE
Q 016710          239 AQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK----SINISSRSLKLL  314 (384)
Q Consensus       239 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~----~~~~~~~~L~~L  314 (384)
                      .++|+.|+++++..... ..+..+++|++|+++++.++.. +...+..+++|+.|+++++..-.    .....+++|++|
T Consensus        48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL  125 (168)
T ss_dssp             GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred             CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence            45555555555543222 3355567777777777766542 23444557777777777764211    122345777777


Q ss_pred             ecccccc--cee----ecccCCCCceeEEecccc
Q 016710          315 EIYDCLR--LVE----VKIAASSLSIFKYSGDVI  342 (384)
Q Consensus       315 ~l~~c~~--l~~----~~~~~~~L~~L~l~~~~~  342 (384)
                      +++++.-  +..    ....+|+|++|+++++..
T Consensus       126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            7776531  112    334578888888877765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=1.3e-07  Score=88.13  Aligned_cols=131  Identities=15%  Similarity=0.153  Sum_probs=86.3

Q ss_pred             HHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEecccc----ccceeee-cCCceeEEEEeCcc---ccc--c--
Q 016710          188 VLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE----ELQRLCI-IAQDVQEVSIQGPL---PFQ--C--  255 (384)
Q Consensus       188 ~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~----~l~~~~~-~~p~L~~L~l~~~~---~~~--~--  255 (384)
                      .+..++..+|+|++|.|.++.+.....+ ..++|++|.+..|.    .+..+.. ..|+|++|.++...   ...  .  
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            3567788999999999998744432222 25799999998775    1112222 57999999986321   111  0  


Q ss_pred             ---eeccccCccCcEEEeeccccchHHHHHHh--ccCCCcceEeecccccccc-----cc---cCCCcccEEeccccc
Q 016710          256 ---KFNLASCKFLKYLRFALTHIKDEWLCNQI--SKFPLLESLLIAGCDDLKS-----IN---ISSRSLKLLEIYDCL  320 (384)
Q Consensus       256 ---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~--~~~p~L~~L~l~~c~~l~~-----~~---~~~~~L~~L~l~~c~  320 (384)
                         .+....+|+|+.|++.++.+++.....+.  ..+|+|+.|+++.+. +..     +.   ..+++|+.|++++|.
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence               11223589999999999888765444443  368899999998754 332     22   235789999998663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.49  E-value=1.7e-07  Score=75.63  Aligned_cols=37  Identities=30%  Similarity=0.382  Sum_probs=18.3

Q ss_pred             CccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          262 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       262 ~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      +++|++|+++++.+++-.....+..+++|+.|+++++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            4555555555555443222234445555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.48  E-value=1.3e-07  Score=78.67  Aligned_cols=130  Identities=16%  Similarity=0.063  Sum_probs=62.4

Q ss_pred             cCCCCccEEEecCeeec-CCCccC-CCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEE
Q 016710          148 LCSNSIEILTLAGLKLE-SPRSVK-LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE  225 (384)
Q Consensus       148 ~~~~~L~~L~L~~~~l~-~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~  225 (384)
                      ..+++|++|+++++.+. .+.... .++|+.|+++++.+..-   ..+..+++|+.|++++|... .+..          
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~-~~~~----------   81 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC-RIGE----------   81 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC-EECS----------
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc-ccCc----------
Confidence            34677777777777655 222222 33666666666655221   12334455555555544221 1110          


Q ss_pred             eccccccceeeecCCceeEEEEeCccccccee--ccccCccCcEEEeeccccchH--HHHHHhccCCCcceEeecccc
Q 016710          226 VCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF--NLASCKFLKYLRFALTHIKDE--WLCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       226 l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~p~L~~L~l~~c~  299 (384)
                              .+....|+|+.|+++++.....+.  .+..+++|+.|++.++.+...  .....+..+|+|+.|+++++.
T Consensus        82 --------~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           82 --------GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             --------CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             --------chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence                    000123444444444443222221  344566677777766654421  112235566677777666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.47  E-value=1.3e-07  Score=78.05  Aligned_cols=93  Identities=16%  Similarity=0.137  Sum_probs=68.6

Q ss_pred             ccCccccCCCCccEEEecCeeecC---CCccCCCCCCeEEeeeeec-ChHHHHHHHcC---CCCccEEEeeeCCCCcee-
Q 016710          142 NLPEIILCSNSIEILTLAGLKLES---PRSVKLSSLTKLFLMRVDA-TDLVLQSLLIG---CPLIEYLSLQLCPGLKNL-  213 (384)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~---~p~Le~L~L~~c~~~~~~-  213 (384)
                      .+|..-.....|++|++++|.+..   .....+++|++|+|++|.. ++.++..+...   |+.|++|+|++|..++.. 
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            455433334579999999987652   2223799999999999975 99999987763   788999999999877432 


Q ss_pred             --ecCCCCCCceEEeccccccce
Q 016710          214 --ELSGLTKLNKFEVCDAEELQR  234 (384)
Q Consensus       214 --~i~~~~~L~~L~l~~~~~l~~  234 (384)
                        .+..+++|++|++++|+.+..
T Consensus       132 l~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCCc
Confidence              344678899999998875443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.47  E-value=3.2e-07  Score=85.58  Aligned_cols=154  Identities=16%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             CcccCccccCCCCccEEEecCeeec--CCCc-c-CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee--
Q 016710          140 RFNLPEIILCSNSIEILTLAGLKLE--SPRS-V-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--  213 (384)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~-~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--  213 (384)
                      ...+|..+  .+.++.|+|+++.+.  .+.. . .+++|+.|+|+++.+..-.- ..+..+++|+.|+|+++......  
T Consensus        30 l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~  106 (361)
T 2xot_A           30 LPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHLHTLDEF  106 (361)
T ss_dssp             CSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             cCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcCCcCCHH
Confidence            34455443  234666777666554  1221 2 56677777777666522110 12345667777777666432111  


Q ss_pred             ecCCCCCCceEEecccccccee----eecCCceeEEEEeCcccccceecc----ccCccCcEEEeeccccchHHHHHHhc
Q 016710          214 ELSGLTKLNKFEVCDAEELQRL----CIIAQDVQEVSIQGPLPFQCKFNL----ASCKFLKYLRFALTHIKDEWLCNQIS  285 (384)
Q Consensus       214 ~i~~~~~L~~L~l~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~L~~~~~~~~~~~~l~~  285 (384)
                      .+..+++|+.|+++++. +..+    ....++|+.|+++++.....+...    ..+++|+.|+|+++.++.-. ...+.
T Consensus       107 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~  184 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQ  184 (361)
T ss_dssp             TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-HHHHH
T ss_pred             HhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-HHHhh
Confidence            13345677777776664 1111    123566777777666533322221    44677777777777655321 12233


Q ss_pred             cCCC--cceEeeccc
Q 016710          286 KFPL--LESLLIAGC  298 (384)
Q Consensus       286 ~~p~--L~~L~l~~c  298 (384)
                      .++.  |+.|++++.
T Consensus       185 ~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          185 KLPAWVKNGLYLHNN  199 (361)
T ss_dssp             HSCHHHHTTEECCSS
T ss_pred             hccHhhcceEEecCC
Confidence            4554  366777663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.45  E-value=4.3e-07  Score=79.03  Aligned_cols=136  Identities=15%  Similarity=0.142  Sum_probs=72.9

Q ss_pred             CCCcccCccccCCCCccEEEecCeeec-C-CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-
Q 016710          138 NPRFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-  213 (384)
Q Consensus       138 ~~~~~lp~~l~~~~~L~~L~L~~~~l~-~-~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~-  213 (384)
                      .....+|..+  .++|++|+|+++.+. . +.. ..+++|++|+|+++.+..-. ...+..+++|+.|+|+++...... 
T Consensus        29 ~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~  105 (229)
T 3e6j_A           29 KRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPS  105 (229)
T ss_dssp             SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccCh
Confidence            3345566544  377888888887665 2 222 26788888888887762111 122456777788877776432111 


Q ss_pred             -ecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcce
Q 016710          214 -ELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLES  292 (384)
Q Consensus       214 -~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~  292 (384)
                       .+..+++|+.|.++++.                     ....+..+..+++|+.|++.+|.++.-. ...+..+++|+.
T Consensus       106 ~~~~~l~~L~~L~Ls~N~---------------------l~~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~  163 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNK---------------------LTELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTH  163 (229)
T ss_dssp             TTTTTCTTCCEEECCSSC---------------------CCSCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             hHhCcchhhCeEeccCCc---------------------ccccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCE
Confidence             12345566666666553                     2222222344555666666555543211 123445556666


Q ss_pred             Eeeccc
Q 016710          293 LLIAGC  298 (384)
Q Consensus       293 L~l~~c  298 (384)
                      |++++.
T Consensus       164 L~l~~N  169 (229)
T 3e6j_A          164 AYLFGN  169 (229)
T ss_dssp             EECTTS
T ss_pred             EEeeCC
Confidence            666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.44  E-value=2.2e-07  Score=80.42  Aligned_cols=90  Identities=18%  Similarity=0.150  Sum_probs=50.4

Q ss_pred             CCCcccCccccCCCCccEEEecCeeec-C-CC--ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710          138 NPRFNLPEIILCSNSIEILTLAGLKLE-S-PR--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL  213 (384)
Q Consensus       138 ~~~~~lp~~l~~~~~L~~L~L~~~~l~-~-~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~  213 (384)
                      .....+|..+  .+.+++|+++++.+. . +.  ...+++|+.|+|+++.+..-. ...+..+++|+.|+|+++......
T Consensus        21 n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~   97 (220)
T 2v70_A           21 QKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQ   97 (220)
T ss_dssp             SCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccC
Confidence            3344566544  345678888887665 2 22  225778888888777662211 112455677777777766433211


Q ss_pred             --ecCCCCCCceEEecccc
Q 016710          214 --ELSGLTKLNKFEVCDAE  230 (384)
Q Consensus       214 --~i~~~~~L~~L~l~~~~  230 (384)
                        .+..+++|+.|+++++.
T Consensus        98 ~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           98 HKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             GGGGTTCSSCCEEECTTSC
T ss_pred             HhHhcCCcCCCEEECCCCc
Confidence              13445566666666553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.43  E-value=5.3e-07  Score=77.91  Aligned_cols=91  Identities=15%  Similarity=0.147  Sum_probs=52.9

Q ss_pred             CCCCcccCccccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710          137 GNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL  213 (384)
Q Consensus       137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~  213 (384)
                      +.....+|..+.  ++|++|+++++.+.  .+ ....+++|+.|+|+++.+..-. ...+..+++|+.|+|+++......
T Consensus        20 ~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~   96 (220)
T 2v9t_B           20 GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELP   96 (220)
T ss_dssp             TSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             CCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccC
Confidence            334555665543  67888888887665  22 2235788888888888763211 112456777888888776433111


Q ss_pred             --ecCCCCCCceEEecccc
Q 016710          214 --ELSGLTKLNKFEVCDAE  230 (384)
Q Consensus       214 --~i~~~~~L~~L~l~~~~  230 (384)
                        .+..+++|+.|+++++.
T Consensus        97 ~~~f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B           97 KSLFEGLFSLQLLLLNANK  115 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HhHccCCCCCCEEECCCCC
Confidence              12345566666666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.39  E-value=4.6e-07  Score=78.83  Aligned_cols=139  Identities=17%  Similarity=0.100  Sum_probs=88.6

Q ss_pred             ccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceee---cCCCCCCceEEecc
Q 016710          153 IEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---LSGLTKLNKFEVCD  228 (384)
Q Consensus       153 L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~---i~~~~~L~~L~l~~  228 (384)
                      .+.++.++..+. .|.. -.++|++|+|+++.+.... ...+..+++|+.|+|.++... .+.   +..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence            456666665554 3332 2488999999998873211 122556788888888887532 211   23345555555554


Q ss_pred             ccccceeeecCCceeEEEEeCcccccce-eccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc---
Q 016710          229 AEELQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI---  304 (384)
Q Consensus       229 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~---  304 (384)
                      +                     ...... ..+..+++|+.|+++++.++.  +...+..+++|+.|+++++. +..+   
T Consensus        98 N---------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~~~  153 (229)
T 3e6j_A           98 N---------------------QLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQ-LKSIPHG  153 (229)
T ss_dssp             S---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSC-CCCCCTT
T ss_pred             C---------------------cCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCc-CCccCHH
Confidence            4                     322111 124678999999999998762  33445789999999999875 3222   


Q ss_pred             -ccCCCcccEEeccc
Q 016710          305 -NISSRSLKLLEIYD  318 (384)
Q Consensus       305 -~~~~~~L~~L~l~~  318 (384)
                       ...+++|++|.+.+
T Consensus       154 ~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFG  168 (229)
T ss_dssp             TTTTCTTCCEEECTT
T ss_pred             HHhCCCCCCEEEeeC
Confidence             23458999999985

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.36  E-value=2.5e-07  Score=76.94  Aligned_cols=128  Identities=13%  Similarity=0.070  Sum_probs=80.5

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      .++++|++..+.  ...+|......++|++|+++++.+. .+....+++|++|+++++.+..-. ..++..+|+|+.|++
T Consensus        19 ~~L~~L~l~~n~--l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           19 VRDRELDLRGYK--IPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELIL   95 (176)
T ss_dssp             TSCEEEECTTSC--CCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEEC
T ss_pred             CCceEEEeeCCC--CchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCCCCEEEC
Confidence            467787775433  3455543333459999999998776 333447999999999999883211 122456899999999


Q ss_pred             eeCCCCcee---ecCCCCCCceEEeccccccceeeecCCceeEEEEeCccccccee----ccccCccCcEEEeeccccch
Q 016710          205 QLCPGLKNL---ELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF----NLASCKFLKYLRFALTHIKD  277 (384)
Q Consensus       205 ~~c~~~~~~---~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~  277 (384)
                      +++......   .+..+++|+.|++.++                     .....+.    .+..+++|+.|++..+....
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N---------------------~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRN---------------------PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSS---------------------GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCC---------------------CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            987532111   1233445555555544                     3211111    25568899999998876544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.36  E-value=1e-07  Score=89.25  Aligned_cols=40  Identities=20%  Similarity=0.106  Sum_probs=22.3

Q ss_pred             ccCccCcEEEeeccccchHHHH---HHhccCCCcceEeecccc
Q 016710          260 ASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCD  299 (384)
Q Consensus       260 ~~~~~L~~L~L~~~~~~~~~~~---~l~~~~p~L~~L~l~~c~  299 (384)
                      ...++|+.|+|++|.+++....   ..+..+++|+.|+++++.
T Consensus       208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            3445666666666666654332   233345666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.33  E-value=8.7e-07  Score=73.12  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             CceeEEEEeCccccc-ceeccccCccCcEEEeeccc-cchHHHHHHhcc---CCCcceEeecccccccccc----cCCCc
Q 016710          240 QDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTH-IKDEWLCNQISK---FPLLESLLIAGCDDLKSIN----ISSRS  310 (384)
Q Consensus       240 p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~---~p~L~~L~l~~c~~l~~~~----~~~~~  310 (384)
                      .+|++|+++++.... ....+.+|++|++|+|.+|. ++|..+..+...   +++|++|+|++|..++..+    ..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666655222 11235678888888888886 777777766652   5688888888888775422    24688


Q ss_pred             ccEEecccccccee
Q 016710          311 LKLLEIYDCLRLVE  324 (384)
Q Consensus       311 L~~L~l~~c~~l~~  324 (384)
                      |++|+|.+|..+.+
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            88888888877663

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.33  E-value=1.2e-06  Score=75.71  Aligned_cols=126  Identities=10%  Similarity=0.046  Sum_probs=56.7

Q ss_pred             CCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee--ecCCCCCCceEEecccc--ccce-eeecCCceeEEE
Q 016710          172 SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE--ELQR-LCIIAQDVQEVS  246 (384)
Q Consensus       172 ~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~--~l~~-~~~~~p~L~~L~  246 (384)
                      +.++.|+|+++.+........+..+++|+.|++.++......  .+..+++|+.|+++++.  .+.. .....++|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            345556665555422111112344555666666555322111  13344556666665553  1111 011345556666


Q ss_pred             EeCcccccc-eeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          247 IQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       247 l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      ++++..... +..+..+++|+.|+|.++.++.-. ...+..+++|+.|++++.
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSC
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCc
Confidence            555542222 122444556666666555543211 223344556666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.33  E-value=4.9e-08  Score=83.00  Aligned_cols=106  Identities=20%  Similarity=0.163  Sum_probs=56.3

Q ss_pred             CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeC
Q 016710          170 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG  249 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~  249 (384)
                      .+++|++|+++++.+..  +. .+..+++|+.|++.+|...      .              ++......|+|+.|++++
T Consensus        46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~------~--------------l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK------K--------------IENLDAVADTLEELWISY  102 (198)
T ss_dssp             HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC------S--------------CSSHHHHHHHCSEEEEEE
T ss_pred             cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc------c--------------ccchhhcCCcCCEEECcC
Confidence            56777777777776622  11 2344566666666665211      0              111111234555555555


Q ss_pred             cccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710          250 PLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       250 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~  299 (384)
                      +.....+ .+..+++|+.|++.++.++.-.....+..+++|+.|++++++
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            4432222 344566777777777666543323445567777777776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.32  E-value=3.5e-08  Score=83.85  Aligned_cols=133  Identities=14%  Similarity=0.047  Sum_probs=78.0

Q ss_pred             CcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCC
Q 016710          140 RFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGL  218 (384)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~  218 (384)
                      ...+|..+..+++|++|+++++.+. .+....+++|+.|+++++.+..  +...+..+|+|+.|++++|.......+.  
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~~~~--  112 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSGIE--  112 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHHHHH--
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCCccc--
Confidence            3445556667888888888887765 4433367888888888887731  2223344577888888776322110111  


Q ss_pred             CCCceEEeccccccceeeecCCceeEEEEeCcccccce--eccccCccCcEEEeeccccchH---------HHHHHhccC
Q 016710          219 TKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDE---------WLCNQISKF  287 (384)
Q Consensus       219 ~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~---------~~~~l~~~~  287 (384)
                                         ..++|+.|+++++......  ..+..+++|++|++.++.+...         .....+..+
T Consensus       113 -------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l  173 (198)
T 1ds9_A          113 -------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             -------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred             -------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence                               2334444444443322111  1355678888888888765432         123456778


Q ss_pred             CCcceEee
Q 016710          288 PLLESLLI  295 (384)
Q Consensus       288 p~L~~L~l  295 (384)
                      |+|+.|+-
T Consensus       174 ~~L~~Ld~  181 (198)
T 1ds9_A          174 PNLKKLDG  181 (198)
T ss_dssp             SSCSEECC
T ss_pred             CCcEEECC
Confidence            88888873

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.28  E-value=7.3e-07  Score=89.10  Aligned_cols=210  Identities=15%  Similarity=0.075  Sum_probs=134.3

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec----CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCcc
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE----SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIE  200 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~----~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  200 (384)
                      ..++.+++....  ....+ ....+++|+.|.++.+.+.    .+ ....+.+|+.|++..+....  .......++.|+
T Consensus       349 ~~L~~l~l~~n~--~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~l~~L~  423 (635)
T 4g8a_A          349 KSLKRLTFTSNK--GGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLE  423 (635)
T ss_dssp             TTCCEEEEESCC--SCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE--ECSCCTTCTTCC
T ss_pred             hhhhhccccccc--CCCCc-ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc--cccccccccccc
Confidence            467777765422  11112 2235789999999886554    12 12267899999988776511  111245688899


Q ss_pred             EEEeeeCCCCce---eecCCCCCCceEEeccccc---cceeeecCCceeEEEEeCccccc--ceeccccCccCcEEEeec
Q 016710          201 YLSLQLCPGLKN---LELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFAL  272 (384)
Q Consensus       201 ~L~L~~c~~~~~---~~i~~~~~L~~L~l~~~~~---l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~~  272 (384)
                      .+.+..+.....   .....+++++.++++.+..   ........++++.|+++++....  .+-.+..+++|+.|+|++
T Consensus       424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~  503 (635)
T 4g8a_A          424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  503 (635)
T ss_dssp             EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence            999876543321   1234567888888887751   11222356789999998865221  233467789999999999


Q ss_pred             cccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEecccccc--ce-eecccC-CCCceeEEecccc
Q 016710          273 THIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLR--LV-EVKIAA-SSLSIFKYSGDVI  342 (384)
Q Consensus       273 ~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~--l~-~~~~~~-~~L~~L~l~~~~~  342 (384)
                      |.++.- ....+.++++|+.|+++++. +..+    ...+++|++|+++++.-  +. .....+ ++|++|++++|+.
T Consensus       504 N~L~~l-~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          504 CQLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             SCCCEE-CTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             CccCCc-ChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            886642 13456788999999999875 2222    23568999999986532  21 222344 6899999999886

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.28  E-value=9.1e-07  Score=76.42  Aligned_cols=141  Identities=12%  Similarity=0.060  Sum_probs=76.7

Q ss_pred             cEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce--eecCCCCCCceEEecccc
Q 016710          154 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE  230 (384)
Q Consensus       154 ~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~  230 (384)
                      +.++.++..+. .|... .++|+.|+++++.+..-. ...+..+++|+.|+|.++.....  ..+..+++|+.|+++++.
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            45666665544 33322 378999999998873211 11245688899999988754322  134456778888887764


Q ss_pred             ccceee----ecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          231 ELQRLC----IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       231 ~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                       +..+.    ...++|+.|+++++..... +..+..+++|+.|+|.++.++.-. ...+..+++|+.|++++.
T Consensus        92 -l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           92 -ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred             -CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCC
Confidence             21111    1345566666655543222 122444556666666555543211 122344555555555553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.20  E-value=7.9e-07  Score=83.22  Aligned_cols=129  Identities=21%  Similarity=0.120  Sum_probs=64.9

Q ss_pred             CCCCCeEEeeeeecChHHHHH---HHc-CCCCccEEEeeeCCCCce-e-ec-CCCCCCceEEeccccc----cceee---
Q 016710          171 LSSLTKLFLMRVDATDLVLQS---LLI-GCPLIEYLSLQLCPGLKN-L-EL-SGLTKLNKFEVCDAEE----LQRLC---  236 (384)
Q Consensus       171 ~~~L~~L~L~~~~~~~~~l~~---l~~-~~p~Le~L~L~~c~~~~~-~-~i-~~~~~L~~L~l~~~~~----l~~~~---  236 (384)
                      .++|+.|+|++|.++......   .+. .++.|++|+|++|..... . .+ ..+++|+.|++++|.-    ...+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            567888888888875544333   333 346888999888753211 0 11 1234677777776640    01110   


Q ss_pred             -ecCCceeEEEEeCccccc-----ceeccccCccCcEEEeeccccchHHHH---HHhccCCCcceEeecccc
Q 016710          237 -IIAQDVQEVSIQGPLPFQ-----CKFNLASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCD  299 (384)
Q Consensus       237 -~~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~p~L~~L~l~~c~  299 (384)
                       ...++|++|+++++....     ....+..+++|++|+|++|.+++....   ..+...++|+.|++++|.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence             123455555555544211     001123345555555555555543322   223444555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.04  E-value=5.2e-06  Score=77.32  Aligned_cols=142  Identities=16%  Similarity=0.064  Sum_probs=93.0

Q ss_pred             cEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHc-CCCCccEEEeeeCCCCcee--ecCCCCCCceEEeccc
Q 016710          154 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLI-GCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDA  229 (384)
Q Consensus       154 ~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~~p~Le~L~L~~c~~~~~~--~i~~~~~L~~L~l~~~  229 (384)
                      +.+++++..+. .|.. -.+.++.|+|+++.++.-... .+. .+++|+.|+|.++......  .+..+++|+.|+++++
T Consensus        21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            56777776555 3322 346799999999988432211 133 7899999999988543221  2456789999999988


Q ss_pred             cccceee----ecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchHHHHHHh---ccCCCcceEeecccc
Q 016710          230 EELQRLC----IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQI---SKFPLLESLLIAGCD  299 (384)
Q Consensus       230 ~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~---~~~p~L~~L~l~~c~  299 (384)
                      . +..+.    ...++|+.|+++++..... ...+..+++|+.|+|+++.++.-. ...+   ..+++|+.|+++++.
T Consensus        99 ~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           99 H-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             C-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSC
T ss_pred             c-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCC
Confidence            5 33322    2467888998888764332 234667888999998888765421 1122   457888888888764

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.01  E-value=1.5e-06  Score=77.48  Aligned_cols=38  Identities=34%  Similarity=0.646  Sum_probs=34.4

Q ss_pred             cccCCCCHHHHHHHhcCCCcccee-ehhhhhhhhhhhhc
Q 016710            8 DRISNLPEPILHHILSFLPFTQTV-QTRVLSRTWKRAWH   45 (384)
Q Consensus         8 d~is~LPdeil~~I~s~L~~~~~~-~~~~vskrW~~lw~   45 (384)
                      ..+..||+||+.+||+|||.++++ ++++|||+|+.+..
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence            357789999999999999999999 99999999998643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.95  E-value=7.2e-06  Score=81.04  Aligned_cols=55  Identities=24%  Similarity=0.143  Sum_probs=31.5

Q ss_pred             CCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce-eecCCCCCCceEEeccc
Q 016710          172 SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDA  229 (384)
Q Consensus       172 ~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~-~~i~~~~~L~~L~l~~~  229 (384)
                      ..|+.|+|+++.++.  +.. +..+++|+.|++++|..... ..+..+++|+.|+++++
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN  496 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence            357778888777632  122 56677788888877643311 12334455566655554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.91  E-value=1.4e-06  Score=88.88  Aligned_cols=106  Identities=9%  Similarity=0.055  Sum_probs=56.0

Q ss_pred             CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce-eecCCCCCCceEEecccc--ccceeeecCCceeEEE
Q 016710          170 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVS  246 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~-~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~  246 (384)
                      .+++|+.|+|+++.+..  +..-+..++.|+.|+|++|..... ..+..+++|+.|+++++.  .++.-...+++|++|+
T Consensus       222 ~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             cCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            45556666666555421  111122455666666655532210 012344566666666554  1111112456677777


Q ss_pred             EeCcccccceeccccCccCcEEEeeccccch
Q 016710          247 IQGPLPFQCKFNLASCKFLKYLRFALTHIKD  277 (384)
Q Consensus       247 l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  277 (384)
                      ++++.....+..+..+++|+.|+|++|.++.
T Consensus       300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            7666544444456778888888888887664

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.88  E-value=1.5e-06  Score=76.72  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=32.0

Q ss_pred             ccCCCCHHHHHHHhcCCCccceeehhhhhhhhhh
Q 016710            9 RISNLPEPILHHILSFLPFTQTVQTRVLSRTWKR   42 (384)
Q Consensus         9 ~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~   42 (384)
                      .|+.||+||+++||+||+.+|+++++.|||+||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999996

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.87  E-value=2.4e-05  Score=71.74  Aligned_cols=76  Identities=18%  Similarity=0.169  Sum_probs=41.2

Q ss_pred             CccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc----cCCCccc-EEeccccccceeec----ccCCCC
Q 016710          262 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN----ISSRSLK-LLEIYDCLRLVEVK----IAASSL  332 (384)
Q Consensus       262 ~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~----~~~~~L~-~L~l~~c~~l~~~~----~~~~~L  332 (384)
                      |++|+.+++.++.++.- -...+.+|++|+.+++.+.  ++.+.    ..|++|+ .+.+.+  ++..+.    .+|++|
T Consensus       225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred             cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence            56677777665543311 1223556667777776552  33332    2446676 676665  333222    457777


Q ss_pred             ceeEEecccc
Q 016710          333 SIFKYSGDVI  342 (384)
Q Consensus       333 ~~L~l~~~~~  342 (384)
                      +++++.++.+
T Consensus       300 ~~l~l~~n~i  309 (329)
T 3sb4_A          300 RYVLATGDKI  309 (329)
T ss_dssp             EEEEECSSCC
T ss_pred             CEEEeCCCcc
Confidence            7777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.85  E-value=0.00014  Score=68.53  Aligned_cols=203  Identities=12%  Similarity=0.134  Sum_probs=115.1

Q ss_pred             CCcEEEEEeCCCCCcccCccccCCCCccEEEecCe--eecCCCccCCCCCCeEEeeeeec---ChHHHHHHHcCCCCccE
Q 016710          127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGL--KLESPRSVKLSSLTKLFLMRVDA---TDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       127 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~--~l~~~~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~  201 (384)
                      +++.+.+.   .....++...+.-.+|+.+.+...  .+.......|++|+.+++..+.+   ....+    . |..|+.
T Consensus       136 ~L~~i~l~---~~i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF----~-~~~L~~  207 (401)
T 4fdw_A          136 QIAKVVLN---EGLKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF----V-YAGIEE  207 (401)
T ss_dssp             CCSEEECC---TTCCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT----T-TCCCSE
T ss_pred             CccEEEeC---CCccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE----e-ecccCE
Confidence            45555542   113344444443345777777652  12122222578888888875544   22222    1 567888


Q ss_pred             EEeeeCCCCcee---ecCCCCCCceEEecccc-ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccch
Q 016710          202 LSLQLCPGLKNL---ELSGLTKLNKFEVCDAE-ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKD  277 (384)
Q Consensus       202 L~L~~c~~~~~~---~i~~~~~L~~L~l~~~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  277 (384)
                      +.+...  ++.+   ...+|++|+.+.+...- .+..-.....+|+.+.+......-..-.+..|++|+.+.+.++....
T Consensus       208 l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~  285 (401)
T 4fdw_A          208 VLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFND  285 (401)
T ss_dssp             EECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred             EEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccC
Confidence            877632  3322   23457788888886531 22222223367888888543321112246778999999997654321


Q ss_pred             H----HHHHHhccCCCcceEeecccccccccc----cCCCcccEEecccc-ccce-eecccCCCCceeEEecccc
Q 016710          278 E----WLCNQISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDC-LRLV-EVKIAASSLSIFKYSGDVI  342 (384)
Q Consensus       278 ~----~~~~l~~~~p~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c-~~l~-~~~~~~~~L~~L~l~~~~~  342 (384)
                      .    .-...+.+|++|+.+.+..  .++.+.    ..|.+|+.+.|.+. ..+. ....+| +|+++.+.++..
T Consensus       286 ~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          286 DPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             CTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             CcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            0    1123567899999999874  244333    35688999999643 2222 223568 999999988764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.83  E-value=1.7e-05  Score=78.35  Aligned_cols=186  Identities=12%  Similarity=0.028  Sum_probs=115.8

Q ss_pred             cCCCCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeec------------ChHHHHHHHcCCCCccEEE-eeeCCC--C
Q 016710          148 LCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDA------------TDLVLQSLLIGCPLIEYLS-LQLCPG--L  210 (384)
Q Consensus       148 ~~~~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~------------~~~~l~~l~~~~p~Le~L~-L~~c~~--~  210 (384)
                      ..+++|+.|+|+++.+. .|... .+++|+.|+++++..            ........+..+++|+.|+ +.....  +
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            34677777777776554 33322 577777777755431            0112223345567777776 332210  0


Q ss_pred             cee-----ecC--CCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHH
Q 016710          211 KNL-----ELS--GLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC  281 (384)
Q Consensus       211 ~~~-----~i~--~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  281 (384)
                      ...     .+.  ....|+.|+++++.  .++. ....++|+.|+++++.....+..++.+++|+.|+|++|.++.  +.
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence            000     011  11368888888875  3333 235678999999988765555678889999999999998775  22


Q ss_pred             HHhccCCCcceEeecccccc----cccccCCCcccEEeccccc--cce----eecccCCCCceeEE
Q 016710          282 NQISKFPLLESLLIAGCDDL----KSINISSRSLKLLEIYDCL--RLV----EVKIAASSLSIFKY  337 (384)
Q Consensus       282 ~l~~~~p~L~~L~l~~c~~l----~~~~~~~~~L~~L~l~~c~--~l~----~~~~~~~~L~~L~l  337 (384)
                       .+..+++|+.|+++++..-    ......+++|++|+++++.  ++.    .+...+|+|+.|++
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence             5778999999999987522    1223356899999998653  121    12234899998853

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.82  E-value=2.1e-05  Score=66.23  Aligned_cols=68  Identities=24%  Similarity=0.140  Sum_probs=37.9

Q ss_pred             CCCcccCccccCCCCccEEEecCeeec-CC-C--ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCC
Q 016710          138 NPRFNLPEIILCSNSIEILTLAGLKLE-SP-R--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP  208 (384)
Q Consensus       138 ~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~-~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  208 (384)
                      .....+|..+.  ++|++|+++++.+. .+ .  ...+++|++|+|+++.+.... ...+..+++|+.|+++++.
T Consensus        18 ~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           18 RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred             CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCc
Confidence            33455665443  37777777777655 22 1  225777777777777662211 1123455666666666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.78  E-value=3.4e-05  Score=63.82  Aligned_cols=56  Identities=29%  Similarity=0.243  Sum_probs=25.8

Q ss_pred             CCccEEEecCeeec-CC-Cc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeC
Q 016710          151 NSIEILTLAGLKLE-SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLC  207 (384)
Q Consensus       151 ~~L~~L~L~~~~l~-~~-~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c  207 (384)
                      ++|++|+++++.+. .+ .. ..+++|++|+++++.+..-. ...+..+++|+.|++.++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCC
Confidence            46666666665544 11 11 24556666666655542100 011234445555555444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.74  E-value=4.3e-06  Score=80.04  Aligned_cols=42  Identities=24%  Similarity=0.432  Sum_probs=37.5

Q ss_pred             CCCccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhc
Q 016710            4 LSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWH   45 (384)
Q Consensus         4 ~~~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~   45 (384)
                      .-..|.|+.||+||+.+||+|||.++++++++|||+|+++..
T Consensus         9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (464)
T 3v7d_B            9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   50 (464)
T ss_dssp             CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred             ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence            345688999999999999999999999999999999987543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.74  E-value=5.3e-05  Score=63.65  Aligned_cols=121  Identities=12%  Similarity=0.131  Sum_probs=78.5

Q ss_pred             cEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce--eecCCCCCCceEEecccc
Q 016710          154 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE  230 (384)
Q Consensus       154 ~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~  230 (384)
                      +.++++++.+. .|.. -.++|++|+++++.+........+..+++|+.|+++++.....  ..+..+++|+.|+++++.
T Consensus        11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            66777776554 3322 2448888888888773221112356688888888888754322  134467788888888875


Q ss_pred             ccceee----ecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccc
Q 016710          231 ELQRLC----IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIK  276 (384)
Q Consensus       231 ~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~  276 (384)
                       +..+.    ...++|+.|+++++..... +..+..+++|++|++.++.+.
T Consensus        90 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             -CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             -CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence             22221    2467888888888764332 334667889999999888765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.73  E-value=4.8e-05  Score=64.06  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=15.6

Q ss_pred             CCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeec
Q 016710          151 NSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDA  184 (384)
Q Consensus       151 ~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~  184 (384)
                      ++|++|+++++.+. .+... .+++|+.|+|+++.+
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i   66 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI   66 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcC
Confidence            45555555554443 22111 345555555555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.72  E-value=8.9e-05  Score=62.37  Aligned_cols=100  Identities=21%  Similarity=0.202  Sum_probs=64.3

Q ss_pred             CceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEe
Q 016710          240 QDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLE  315 (384)
Q Consensus       240 p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~  315 (384)
                      ++|++|+++++.....+..+..+++|+.|+++++.++.-. ...+.++++|+.|+++++. +..+    ....++|++|+
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEE
Confidence            4666677666654433445667788888888887765321 2345677888888888765 2222    22457888888


Q ss_pred             ccccccceee----cccCCCCceeEEecccc
Q 016710          316 IYDCLRLVEV----KIAASSLSIFKYSGDVI  342 (384)
Q Consensus       316 l~~c~~l~~~----~~~~~~L~~L~l~~~~~  342 (384)
                      +.+.. +..+    ...+++|++|++++|++
T Consensus       109 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          109 LHGND-ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence            88642 2222    34578888888888875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.69  E-value=1.4e-05  Score=81.45  Aligned_cols=107  Identities=16%  Similarity=0.080  Sum_probs=76.3

Q ss_pred             HHHcCCCCccEEEeeeCCCCce-eecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcE
Q 016710          191 SLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKY  267 (384)
Q Consensus       191 ~l~~~~p~Le~L~L~~c~~~~~-~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~  267 (384)
                      ..+..++.|+.|+|+++..... ..+..+++|+.|+++++.  .++.-....++|+.|+++++.....+..+..+++|++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            3456789999999998864421 123357899999999885  2222223678999999998876555666788899999


Q ss_pred             EEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710          268 LRFALTHIKDEWLCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       268 L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~  299 (384)
                      |+|.+|.++.  +...+..+++|+.|+|+++.
T Consensus       298 L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          298 FYFFDNMVTT--LPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             EECCSSCCCC--CCSSTTSCTTCCCEECTTSC
T ss_pred             EECCCCCCCc--cChhhhcCCCccEEeCCCCc
Confidence            9999887752  33346788999999999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.59  E-value=9.5e-06  Score=77.17  Aligned_cols=42  Identities=26%  Similarity=0.468  Sum_probs=37.9

Q ss_pred             CCCCCccccCCCCHH----HHHHHhcCCCccceeehhhhhhhhhhh
Q 016710            2 ESLSHIDRISNLPEP----ILHHILSFLPFTQTVQTRVLSRTWKRA   43 (384)
Q Consensus         2 ~~~~~~d~is~LPde----il~~I~s~L~~~~~~~~~~vskrW~~l   43 (384)
                      +.+-..|.|+.||+|    |+.+||+||+.++++++++|||+|+++
T Consensus         3 ~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            445567999999999    999999999999999999999999953

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.57  E-value=1.8e-05  Score=75.44  Aligned_cols=41  Identities=29%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             CCCCccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhh
Q 016710            3 SLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA   43 (384)
Q Consensus         3 ~~~~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~l   43 (384)
                      ..-..|.++.||+|++.+||+||+.++++++++|||+|+++
T Consensus        12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            44567899999999999999999999999999999999864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.55  E-value=0.00012  Score=60.35  Aligned_cols=123  Identities=16%  Similarity=0.013  Sum_probs=72.3

Q ss_pred             ccEEEecCeeecCCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee--ecCCCCCCceEEecccc
Q 016710          153 IEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE  230 (384)
Q Consensus       153 L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~  230 (384)
                      .+.++++++.+........++|+.|+++++.+..- ....+..+++|+.|++.++......  .+..+++|+.|+++++.
T Consensus         9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            35566655544411122346788888887776321 1122456778888888776433211  13456788888888774


Q ss_pred             ccceee----ecCCceeEEEEeCcccccceec-cccCccCcEEEeeccccch
Q 016710          231 ELQRLC----IIAQDVQEVSIQGPLPFQCKFN-LASCKFLKYLRFALTHIKD  277 (384)
Q Consensus       231 ~l~~~~----~~~p~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~  277 (384)
                       +..+.    ...++|++|+++++.....+.. +..+++|++|++.++.+..
T Consensus        88 -l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           88 -LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence             22211    2457788888877664333322 4567888999988887653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.51  E-value=0.00016  Score=66.21  Aligned_cols=95  Identities=11%  Similarity=0.137  Sum_probs=59.5

Q ss_pred             CCCCceEEecccc--ccceee-ecCCceeEEEEeCcccccceeccccCccCc-EEEeeccccchHHHHHHhccCCCcceE
Q 016710          218 LTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLK-YLRFALTHIKDEWLCNQISKFPLLESL  293 (384)
Q Consensus       218 ~~~L~~L~l~~~~--~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~p~L~~L  293 (384)
                      +++|+.+++.++.  .++.-. ..+++|+++.+......-..-.+.+|++|+ .+.+.. .++.- -...+.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCccCCEE
Confidence            6789999998753  222222 257789999887753211122467889999 999876 22210 12356789999999


Q ss_pred             eecccccccc----cccCCCcccEEe
Q 016710          294 LIAGCDDLKS----INISSRSLKLLE  315 (384)
Q Consensus       294 ~l~~c~~l~~----~~~~~~~L~~L~  315 (384)
                      ++++.. ++.    ....+++|+.+.
T Consensus       303 ~l~~n~-i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDK-ITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCc-cCccchhhhcCCcchhhhc
Confidence            986533 322    334567888774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.45  E-value=0.00018  Score=60.05  Aligned_cols=41  Identities=20%  Similarity=0.082  Sum_probs=24.7

Q ss_pred             cccCccCcEEEe--eccccchHH---HHHHhccCCCcceEeecccc
Q 016710          259 LASCKFLKYLRF--ALTHIKDEW---LCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       259 ~~~~~~L~~L~L--~~~~~~~~~---~~~l~~~~p~L~~L~l~~c~  299 (384)
                      +...++|++|+|  .++.+++..   +...+...+.|++|+++++.
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            344566777777  666666654   33344555677777776654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.24  E-value=0.00045  Score=56.66  Aligned_cols=90  Identities=20%  Similarity=0.168  Sum_probs=50.5

Q ss_pred             CCCCcccCccccCCCCccEEEecCeeec-C-CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710          137 GNPRFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL  213 (384)
Q Consensus       137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~-~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~  213 (384)
                      +.....+|..+  .++|+.|+|+++.+. . +.. ..+++|++|+|+++.+..-. ...+..+++|+.|+|+++......
T Consensus        18 ~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~   94 (170)
T 3g39_A           18 GKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIP   94 (170)
T ss_dssp             TSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeC
Confidence            33445566554  377888888887665 2 222 25778888888887762111 122356677777777776432111


Q ss_pred             --ecCCCCCCceEEeccc
Q 016710          214 --ELSGLTKLNKFEVCDA  229 (384)
Q Consensus       214 --~i~~~~~L~~L~l~~~  229 (384)
                        .+..+++|+.|++.+.
T Consensus        95 ~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           95 RGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTTTTTCTTCCEEECCSS
T ss_pred             HHHhcCCCCCCEEEeCCC
Confidence              1233455555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.22  E-value=0.00053  Score=56.50  Aligned_cols=89  Identities=15%  Similarity=0.095  Sum_probs=50.4

Q ss_pred             CCCcccCccccCCCCccEEEecCeeec-C-CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-
Q 016710          138 NPRFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-  213 (384)
Q Consensus       138 ~~~~~lp~~l~~~~~L~~L~L~~~~l~-~-~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~-  213 (384)
                      .....+|..+.  ++|++|+|+++.+. . +.. ..+++|+.|+|+++.+..-. ...+..+++|+.|+|+++...... 
T Consensus        22 n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~   98 (174)
T 2r9u_A           22 IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPR   98 (174)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeCH
Confidence            33456666543  77888888887665 2 222 26788888888887762210 112355677777777766432111 


Q ss_pred             -ecCCCCCCceEEeccc
Q 016710          214 -ELSGLTKLNKFEVCDA  229 (384)
Q Consensus       214 -~i~~~~~L~~L~l~~~  229 (384)
                       .+..+++|+.|++.+.
T Consensus        99 ~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           99 GAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTTTTCTTCSEEECCSS
T ss_pred             HHhccccCCCEEEeCCC
Confidence             1233455555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.13  E-value=0.003  Score=59.40  Aligned_cols=197  Identities=10%  Similarity=0.146  Sum_probs=122.4

Q ss_pred             CCCcEEEEEeCCCCCcccCcccc-CCCCccEEEecCeeec--CCCccCCCCCCeEEeeeeec--ChHHHHHHHcCCCCcc
Q 016710          126 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDA--TDLVLQSLLIGCPLIE  200 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le  200 (384)
                      .+++++.+..   ....++...+ .|++|+.+++..+.+.  ......+.+|+.+.+.....  ..    ..+..|++|+
T Consensus       157 ~~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~  229 (401)
T 4fdw_A          157 STVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLK  229 (401)
T ss_dssp             CCCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCC
T ss_pred             CCceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCC
Confidence            4677777632   2445554444 6999999999876554  33344578999999875421  22    2256799999


Q ss_pred             EEEeeeCCCCceee---cCCCCCCceEEeccccccceee----ecCCceeEEEEeCcccc------cceeccccCccCcE
Q 016710          201 YLSLQLCPGLKNLE---LSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPF------QCKFNLASCKFLKY  267 (384)
Q Consensus       201 ~L~L~~c~~~~~~~---i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~------~~~~~~~~~~~L~~  267 (384)
                      .+.+...  +..+.   ..+ .+|+.+.+...  +..+.    ..|++|+.+.+.+....      -..-.+.+|++|+.
T Consensus       230 ~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~  304 (401)
T 4fdw_A          230 TIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR  304 (401)
T ss_dssp             CEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred             EEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence            9999753  33222   234 48999988543  32322    26889999999775532      11224678999999


Q ss_pred             EEeeccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccceee----cccC-CCCceeEEe
Q 016710          268 LRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEV----KIAA-SSLSIFKYS  338 (384)
Q Consensus       268 L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~----~~~~-~~L~~L~l~  338 (384)
                      +.+... +..- -...+.+|++|+.+.+...  ++.+    ...| +|+.+.+.+.. +..+    ..++ .++++|.+-
T Consensus       305 l~l~~~-i~~I-~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          305 FEIPES-IRIL-GQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             ECCCTT-CCEE-CTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEEC
T ss_pred             EEeCCc-eEEE-hhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeC
Confidence            999743 2110 1234678999999999542  3333    2356 89999998642 2222    1334 356666665


Q ss_pred             cc
Q 016710          339 GD  340 (384)
Q Consensus       339 ~~  340 (384)
                      .+
T Consensus       379 ~~  380 (401)
T 4fdw_A          379 AE  380 (401)
T ss_dssp             GG
T ss_pred             HH
Confidence            44

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.95  E-value=0.0012  Score=54.14  Aligned_cols=15  Identities=13%  Similarity=-0.030  Sum_probs=8.6

Q ss_pred             cCCCCceeEEecccc
Q 016710          328 AASSLSIFKYSGDVI  342 (384)
Q Consensus       328 ~~~~L~~L~l~~~~~  342 (384)
                      .+++|++|++++|++
T Consensus       100 ~l~~L~~L~L~~N~~  114 (170)
T 3g39_A          100 NLKSLTHIWLLNNPW  114 (170)
T ss_dssp             TCTTCCEEECCSSCB
T ss_pred             CCCCCCEEEeCCCCC
Confidence            455666666666544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.89  E-value=0.0016  Score=53.56  Aligned_cols=78  Identities=14%  Similarity=0.023  Sum_probs=32.6

Q ss_pred             ccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccc--cce-eecccCCCCcee
Q 016710          263 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCL--RLV-EVKIAASSLSIF  335 (384)
Q Consensus       263 ~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L  335 (384)
                      ++|+.|+++++.++.- ....+..+++|+.|+++++. +..+    ....++|++|++++..  .+. .....+++|++|
T Consensus        33 ~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence            4444454444443321 01223344555555555432 2111    1223455555555321  111 112345666666


Q ss_pred             EEecccc
Q 016710          336 KYSGDVI  342 (384)
Q Consensus       336 ~l~~~~~  342 (384)
                      ++++|++
T Consensus       111 ~L~~N~~  117 (174)
T 2r9u_A          111 YLYNNPW  117 (174)
T ss_dssp             ECCSSCB
T ss_pred             EeCCCCc
Confidence            6666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.77  E-value=0.0011  Score=55.28  Aligned_cols=85  Identities=16%  Similarity=0.028  Sum_probs=47.9

Q ss_pred             ccCccCcEEEeeccccchHHHH---HHhccCCCcceEeeccccccc-------ccccCCCcccEEec--cccc-c-----
Q 016710          260 ASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCDDLK-------SINISSRSLKLLEI--YDCL-R-----  321 (384)
Q Consensus       260 ~~~~~L~~L~L~~~~~~~~~~~---~l~~~~p~L~~L~l~~c~~l~-------~~~~~~~~L~~L~l--~~c~-~-----  321 (384)
                      ...++|++|+|+++.+++....   ..+...++|++|+++++..-.       ......++|++|+|  .++. +     
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            3456677777777776665433   334445677777777665221       11123356777777  3221 1     


Q ss_pred             -ceeecccCCCCceeEEecccccc
Q 016710          322 -LVEVKIAASSLSIFKYSGDVISF  344 (384)
Q Consensus       322 -l~~~~~~~~~L~~L~l~~~~~~~  344 (384)
                       +.+.....++|++|++++|.+..
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCCh
Confidence             11233456788888888877643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.04  E-value=0.035  Score=51.82  Aligned_cols=75  Identities=12%  Similarity=0.077  Sum_probs=36.3

Q ss_pred             ccCccCcEEEeeccc--cchHHHHHHhccCCCcceEeecccccccccc----cCCCcccEEecccc-ccce-eecccCCC
Q 016710          260 ASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDC-LRLV-EVKIAASS  331 (384)
Q Consensus       260 ~~~~~L~~L~L~~~~--~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c-~~l~-~~~~~~~~  331 (384)
                      ..|.+|+.+.+..+-  +.+    ..+.+|.+|+.+++..  .++.++    ..|.+|+.+.+... ..+. ..-.+|++
T Consensus       294 ~~~~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          294 YGCSSLTEVKLLDSVKFIGE----EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCIN  367 (394)
T ss_dssp             TTCTTCCEEEECTTCCEECT----TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTT
T ss_pred             cccccccccccccccceech----hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCC
Confidence            345666666653321  111    1245566666666632  122222    24566777666432 1122 11245777


Q ss_pred             CceeEEecc
Q 016710          332 LSIFKYSGD  340 (384)
Q Consensus       332 L~~L~l~~~  340 (384)
                      |+++.+..+
T Consensus       368 L~~i~lp~~  376 (394)
T 4fs7_A          368 LKKVELPKR  376 (394)
T ss_dssp             CCEEEEEGG
T ss_pred             CCEEEECCC
Confidence            777776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.91  E-value=0.009  Score=54.69  Aligned_cols=89  Identities=15%  Similarity=0.138  Sum_probs=51.3

Q ss_pred             CCcccCccccCCCCccEEEecC-eeec-CC-C-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-
Q 016710          139 PRFNLPEIILCSNSIEILTLAG-LKLE-SP-R-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-  213 (384)
Q Consensus       139 ~~~~lp~~l~~~~~L~~L~L~~-~~l~-~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~-  213 (384)
                      ....+|. +..+++|++|+|++ +.+. .+ . ...+++|+.|+|+++.+..-. ...+..+++|+.|+|+++.-.... 
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCH
Confidence            3455777 66677788888875 6555 22 2 225777888888777762211 122456777888887776432111 


Q ss_pred             -ecCCCCCCceEEecccc
Q 016710          214 -ELSGLTKLNKFEVCDAE  230 (384)
Q Consensus       214 -~i~~~~~L~~L~l~~~~  230 (384)
                       .+..+ .|+.|.+.+..
T Consensus        98 ~~~~~~-~L~~l~l~~N~  114 (347)
T 2ifg_A           98 KTVQGL-SLQELVLSGNP  114 (347)
T ss_dssp             TTTCSC-CCCEEECCSSC
T ss_pred             HHcccC-CceEEEeeCCC
Confidence             11222 37777776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.31  E-value=0.022  Score=51.99  Aligned_cols=78  Identities=18%  Similarity=0.114  Sum_probs=42.8

Q ss_pred             cCCceeEEEEeC-cccccce-eccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccccc---CCCccc
Q 016710          238 IAQDVQEVSIQG-PLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINI---SSRSLK  312 (384)
Q Consensus       238 ~~p~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~---~~~~L~  312 (384)
                      ..++|+.|++++ +...... -.+..+++|+.|+|++|.++.- ....+.++++|+.|+|+++. +..+..   ....|+
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~  106 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQ  106 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCC
T ss_pred             CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCce
Confidence            345677777765 4433322 2356677777777777765432 12345567777777777654 222211   112366


Q ss_pred             EEecc
Q 016710          313 LLEIY  317 (384)
Q Consensus       313 ~L~l~  317 (384)
                      .|.|.
T Consensus       107 ~l~l~  111 (347)
T 2ifg_A          107 ELVLS  111 (347)
T ss_dssp             EEECC
T ss_pred             EEEee
Confidence            66665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.20  E-value=0.018  Score=50.74  Aligned_cols=32  Identities=22%  Similarity=0.190  Sum_probs=21.9

Q ss_pred             cCcEEEeeccccch------HHHHHHhccCCCcceEee
Q 016710          264 FLKYLRFALTHIKD------EWLCNQISKFPLLESLLI  295 (384)
Q Consensus       264 ~L~~L~L~~~~~~~------~~~~~l~~~~p~L~~L~l  295 (384)
                      +|++|.|.+|.+..      .....++..+|+|+.|+=
T Consensus       221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            78888888777653      233456677888888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.70  E-value=0.014  Score=51.32  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=34.6

Q ss_pred             CCCcEEEEEeCCCC-CcccCccccCCCCccEEEecCeeecCC-CccCCC--CCCeEEeeeeecCh------HHHHHHHcC
Q 016710          126 CNVKELSLELLGNP-RFNLPEIILCSNSIEILTLAGLKLESP-RSVKLS--SLTKLFLMRVDATD------LVLQSLLIG  195 (384)
Q Consensus       126 ~~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~l~~~-~~~~~~--~L~~L~L~~~~~~~------~~l~~l~~~  195 (384)
                      +.++.|+|+..... ...+|..+..+++|+.|+|+++.+... ....+.  +|+.|+|.++.+..      .-...++..
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~  249 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER  249 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence            45566555432211 112333334456666666666554411 111222  56666666555521      112234455


Q ss_pred             CCCccEEE
Q 016710          196 CPLIEYLS  203 (384)
Q Consensus       196 ~p~Le~L~  203 (384)
                      +|+|+.|+
T Consensus       250 ~P~L~~LD  257 (267)
T 3rw6_A          250 FPKLLRLD  257 (267)
T ss_dssp             CTTCCEES
T ss_pred             CcccCeEC
Confidence            55555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.63  E-value=0.091  Score=48.91  Aligned_cols=92  Identities=14%  Similarity=0.103  Sum_probs=55.7

Q ss_pred             cCCceeEEEEeCcccccceeccccCccCcEEEeeccc--cchHHHHHHhccCCCcceEeeccccccccc----ccCCCcc
Q 016710          238 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSL  311 (384)
Q Consensus       238 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L  311 (384)
                      .+.+|+.+.+......-..-.+.+|.+|+.+.|...-  +..    ..+.+|.+|+.+.+...  ++.+    ...|++|
T Consensus       295 ~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          295 GCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGK----RSFRGCTSLSNINFPLS--LRKIGANAFQGCINL  368 (394)
T ss_dssp             TCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECT----TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTC
T ss_pred             ccccccccccccccceechhhhcCCCCCCEEEeCCcccEEhH----HhccCCCCCCEEEECcc--ccEehHHHhhCCCCC
Confidence            4667777777543211112236678999999985431  222    24678999999998542  3333    3457899


Q ss_pred             cEEecccc-ccceeecccCCCCcee
Q 016710          312 KLLEIYDC-LRLVEVKIAASSLSIF  335 (384)
Q Consensus       312 ~~L~l~~c-~~l~~~~~~~~~L~~L  335 (384)
                      +.+.+.+. ..+..-..+|++|+.+
T Consensus       369 ~~i~lp~~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          369 KKVELPKRLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred             CEEEECCCCEEhhheecCCCCCcEE
Confidence            99998642 2222223567777765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.14  E-value=0.25  Score=45.92  Aligned_cols=120  Identities=14%  Similarity=0.125  Sum_probs=63.1

Q ss_pred             CCCCCceEEecccc-ccceee-ecCCceeEEEEeCcccccceeccccCccCcEEEeecc-c-cchHHHHHHhccCCCcce
Q 016710          217 GLTKLNKFEVCDAE-ELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALT-H-IKDEWLCNQISKFPLLES  292 (384)
Q Consensus       217 ~~~~L~~L~l~~~~-~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~-~-~~~~~~~~l~~~~p~L~~  292 (384)
                      .|..|+.+.+.... .+..-. ..+++|+.+.+......-..-.+.+|.+|+.+.|..+ . +.+    ..+.+|.+|++
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~~  338 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQLER  338 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCE
T ss_pred             ecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCCCE
Confidence            46677777765432 111111 2467777777754321111223667889999988543 1 222    24677899999


Q ss_pred             Eeecc-cccc-cccccCCCcccEEeccccccceeecccCCCCceeEEecc
Q 016710          293 LLIAG-CDDL-KSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGD  340 (384)
Q Consensus       293 L~l~~-c~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~  340 (384)
                      +.|-. ...+ ......|.+|+.+.+.+......-...+.+|+.+.+..+
T Consensus       339 i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          339 IAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             EEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--------
T ss_pred             EEECcccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCC
Confidence            99843 2222 223346789999988754322222355778888877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.83  E-value=1.5  Score=40.55  Aligned_cols=121  Identities=12%  Similarity=0.153  Sum_probs=57.5

Q ss_pred             HcCCCCccEEEeeeCCC-CceeecCCCCCCceEEecccc-ccceee-ecCCceeEEEEeCcccccceeccccCccCcEEE
Q 016710          193 LIGCPLIEYLSLQLCPG-LKNLELSGLTKLNKFEVCDAE-ELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLR  269 (384)
Q Consensus       193 ~~~~p~Le~L~L~~c~~-~~~~~i~~~~~L~~L~l~~~~-~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  269 (384)
                      +..|..|+.+.+..... +..-....++.|+.+.+...- .+..-. ..|.+|+++.+......--.-.+.+|.+|+.+.
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEE
Confidence            44577777776643211 111122345666666664321 111111 145677777664432111112356788888888


Q ss_pred             eecc--ccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEecc
Q 016710          270 FALT--HIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIY  317 (384)
Q Consensus       270 L~~~--~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~  317 (384)
                      |...  .+..    ..+.+|++|+.+++.+......-...+.+|+.+.+.
T Consensus       341 ip~sv~~I~~----~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          341 IPSSVTKIPE----SAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA  386 (394)
T ss_dssp             ECTTCCBCCG----GGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred             ECcccCEEhH----hHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence            8433  1222    246678888888887643221122344567666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.05  E-value=1.2  Score=37.00  Aligned_cols=35  Identities=11%  Similarity=0.096  Sum_probs=17.5

Q ss_pred             ccCcEEEeeccccchHHHHHHhc---cCCCcceEeecc
Q 016710          263 KFLKYLRFALTHIKDEWLCNQIS---KFPLLESLLIAG  297 (384)
Q Consensus       263 ~~L~~L~L~~~~~~~~~~~~l~~---~~p~L~~L~l~~  297 (384)
                      ..|++|+|..+.+++.....+..   .-..|+.|++++
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            45556666555555544443322   223466666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=84.19  E-value=0.29  Score=40.74  Aligned_cols=94  Identities=20%  Similarity=0.141  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHh--CCCcEEEEEeC-CCCC---cccCccccCCCCccEEEecCeeecCCCcc-------CCCCCCeEEee
Q 016710          114 PYIDQCIFYALG--CNVKELSLELL-GNPR---FNLPEIILCSNSIEILTLAGLKLESPRSV-------KLSSLTKLFLM  180 (384)
Q Consensus       114 ~~~~~~l~~~~~--~~l~~L~l~~~-~~~~---~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-------~~~~L~~L~L~  180 (384)
                      .+++..+.....  ..+++|+|... ...+   ..+...+..-.+|+.|+|++|.+......       .=..|++|+|+
T Consensus        27 t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~  106 (197)
T 1pgv_A           27 TDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE  106 (197)
T ss_dssp             CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             CCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence            345555555443  45666666421 2111   12333344456788888888776622111       34678888888


Q ss_pred             eeecChHHHHHHHc---CCCCccEEEeeeC
Q 016710          181 RVDATDLVLQSLLI---GCPLIEYLSLQLC  207 (384)
Q Consensus       181 ~~~~~~~~l~~l~~---~~p~Le~L~L~~c  207 (384)
                      ++.+++.+...+..   ....|++|+|.++
T Consensus       107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          107 SNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            88887766665543   3445666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=81.60  E-value=1.8  Score=39.58  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc--cc-cccccCCCcccEE
Q 016710          238 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD--DL-KSINISSRSLKLL  314 (384)
Q Consensus       238 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~--~l-~~~~~~~~~L~~L  314 (384)
                      .+.+|+.+.+-.....-....+..|.+|+.+.+...- ..- -...+.+|++|+.+.+.+..  .+ ......|.+|+.+
T Consensus       238 ~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i-~~i-~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          238 GMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKV-KTV-PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCC-SEE-CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCccceEEEcCCCccEeCccccceeehhccccccccc-eec-cccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            3456666666433211111124456677777664321 100 01234567777777775421  12 1222345677777


Q ss_pred             eccc-ccccee-ecccCCCCceeEEe
Q 016710          315 EIYD-CLRLVE-VKIAASSLSIFKYS  338 (384)
Q Consensus       315 ~l~~-c~~l~~-~~~~~~~L~~L~l~  338 (384)
                      .|-+ ...+.+ --.+|.+|+++.+-
T Consensus       316 ~lp~~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          316 TLPTALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred             EcCccccEEHHHHhhCCCCCCEEEEC
Confidence            7742 222221 12456777766663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	3e-08
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.003

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 1  MESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQV 60
          +E     D IS LP+ +  ++LSFL     +Q     R W+       + +   +   + 
Sbjct: 10 IEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR---EKCKEE 66

Query: 61 FLEDSNDGSEAGKQKLREIFNYIKETLRIRHN 92
           +++          K   I +  K     +H 
Sbjct: 67 GIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHR 98

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 16/94 (17%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 6  HIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLED- 64
            D I++LP  I   I ++L F   + +  +S+ W +      +++  +  + ++ + + 
Sbjct: 2  KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNK------IIRKSTSLWKKLLISEN 55

Query: 65 --SNDGSEAGKQKLREIFNYIKETLRIRHNEMIR 96
            S  G  +   KL + +  + +  R+R + +  
Sbjct: 56 FVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLEN 89

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 10/85 (11%)

Query: 4  LSHIDRISNLPEP----ILHHILSFLPFTQTVQTRVLSRTWKRA------WHTFSVLKFD 53
          +   D I+ LP      I  +ILS+L         ++ + W R       W         
Sbjct: 5  MLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR 64

Query: 54 SDFFHQVFLEDSNDGSEAGKQKLRE 78
          +D   +   E    G    K K  +
Sbjct: 65 TDSLWRGLAERRGWGQYLFKNKPPD 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.28
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.13
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.04
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.02
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.02
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.98
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.83
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.76
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.72
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.4
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.35
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.24
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.2
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.95
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.78
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.55
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.74
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	92.83

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.3e-15  Score=132.50  Aligned_cols=169  Identities=16%  Similarity=0.259  Sum_probs=84.7

Q ss_pred             CCCCccEEEecCeeecC---C-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceee----cCCCCC
Q 016710          149 CSNSIEILTLAGLKLES---P-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE----LSGLTK  220 (384)
Q Consensus       149 ~~~~L~~L~L~~~~l~~---~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~----i~~~~~  220 (384)
                      ...+|++|++++|.+..   . ....+++|++|++.++.+++..+.. +..+|+|+.|++++|..++...    ..++++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHh
Confidence            34567777777765541   1 1225677777777777666555554 3456677777777765553211    124566


Q ss_pred             CceEEecccccccee------eecCCceeEEEEeCcccc----cceeccccCccCcEEEeeccc-cchHHHHHHhccCCC
Q 016710          221 LNKFEVCDAEELQRL------CIIAQDVQEVSIQGPLPF----QCKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPL  289 (384)
Q Consensus       221 L~~L~l~~~~~l~~~------~~~~p~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~p~  289 (384)
                      |++|++++|..+...      ...+++|+.|.+.++...    ........||+|++|+++++. +++.. ...+.++|+
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-~~~l~~~~~  201 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQLNY  201 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGGGCTT
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh-hhhhcccCc
Confidence            777777666532211      112455555555543210    011112335555555555443 33333 222334555


Q ss_pred             cceEeecccccccccc----cCCCcccEEecccc
Q 016710          290 LESLLIAGCDDLKSIN----ISSRSLKLLEIYDC  319 (384)
Q Consensus       290 L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c  319 (384)
                      |++|++++|..++...    ..+|+|++|++.+|
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            5555555555443211    12355555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.9e-16  Score=137.01  Aligned_cols=186  Identities=19%  Similarity=0.287  Sum_probs=134.9

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec---CCCccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE---SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~  201 (384)
                      .++++++++.+......+...+..|++|++|++++|.+.   ......+++|++|++++|.. ++..+..++.+||+|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            478888876543334445555667999999999998765   11223689999999999865 88999999999999999


Q ss_pred             EEeeeCCCCceee----c-CCCCCCceEEecccc-c-----cceeeecCCceeEEEEeCcc--cccceeccccCccCcEE
Q 016710          202 LSLQLCPGLKNLE----L-SGLTKLNKFEVCDAE-E-----LQRLCIIAQDVQEVSIQGPL--PFQCKFNLASCKFLKYL  268 (384)
Q Consensus       202 L~L~~c~~~~~~~----i-~~~~~L~~L~l~~~~-~-----l~~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~~L~~L  268 (384)
                      |++++|..+....    + ..+++|++|.+.+|. .     +..+...+|+|++|+++++.  .......+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            9999997763221    1 235799999999874 2     23334468999999998865  22233456789999999


Q ss_pred             Eeeccc-cchHHHHHHhccCCCcceEeeccccc---ccccccCCCccc
Q 016710          269 RFALTH-IKDEWLCNQISKFPLLESLLIAGCDD---LKSINISSRSLK  312 (384)
Q Consensus       269 ~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~~---l~~~~~~~~~L~  312 (384)
                      ++.+|. +++..+.. +.++|+|+.|++.+|..   +..+...+|+|+
T Consensus       206 ~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         206 SLSRCYDIIPETLLE-LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             ECTTCTTCCGGGGGG-GGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             ECCCCCCCChHHHHH-HhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence            999864 77766544 56799999999999832   122333455554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=1.5e-11  Score=105.38  Aligned_cols=180  Identities=18%  Similarity=0.167  Sum_probs=87.2

Q ss_pred             CCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccc
Q 016710          151 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA  229 (384)
Q Consensus       151 ~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~  229 (384)
                      ++|+.|++.+|.+. ......+++|++|+++++.+.+-.  . +..+++|+.+.+.++.......+..+++|+.+.+.++
T Consensus        41 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred             CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-ccccccccccccccccccccccccccccccccccccc
Confidence            34444444444333 111123444555544444441100  0 3444555555554443222112334445555555544


Q ss_pred             cccceee-ecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc--c
Q 016710          230 EELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN--I  306 (384)
Q Consensus       230 ~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~--~  306 (384)
                      ....... ...+.+..+.+++..... ...+..+++|+.|++.++...+..   -+.++++|+.|+++++. ++.+.  .
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~-l~~l~~l~  192 (227)
T d1h6ua2         118 QITDVTPLAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNK-ISDISPLA  192 (227)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSC-CCCCGGGG
T ss_pred             cccccchhccccchhhhhchhhhhch-hhhhccccccccccccccccccch---hhcccccceecccCCCc-cCCChhhc
Confidence            3111111 133445555544433111 112445677777777766654321   24567777777777763 33322  3


Q ss_pred             CCCcccEEeccccccceeec--ccCCCCceeEEec
Q 016710          307 SSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSG  339 (384)
Q Consensus       307 ~~~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~  339 (384)
                      .+++|++|+++++ .+.+++  .++++|++|++++
T Consensus       193 ~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         193 SLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             CCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            4577888888776 455443  5678888887763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=4.8e-11  Score=102.06  Aligned_cols=182  Identities=16%  Similarity=0.126  Sum_probs=134.0

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecC-CCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES-PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      .+++++++..++  ...++ .+..+++|++|+++++.+.. .....+++|+.+.++++.+++  +.. +..++.|+.+.+
T Consensus        41 ~~L~~L~l~~~~--i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEEC
T ss_pred             CCcCEEECCCCC--CCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccccccccc
Confidence            588888886443  44554 46789999999999987763 334579999999999988732  112 567999999999


Q ss_pred             eeCCCCceeecCCCCCCceEEecccccccee-eecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHH
Q 016710          205 QLCPGLKNLELSGLTKLNKFEVCDAEELQRL-CIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQ  283 (384)
Q Consensus       205 ~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l  283 (384)
                      .++...........+.++.+.+..+...... ...+++|+.|.+.++..... ..+..+++|+.|+++++.+++-   .-
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~Ls~n~l~~l---~~  190 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDI---SP  190 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC---GG
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc-hhhcccccceecccCCCccCCC---hh
Confidence            9887654444556679999999887622221 23678999999988763322 2367899999999999987642   23


Q ss_pred             hccCCCcceEeecccccccccc--cCCCcccEEeccc
Q 016710          284 ISKFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYD  318 (384)
Q Consensus       284 ~~~~p~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~  318 (384)
                      +.++++|++|++++|. ++.+.  ..+++|+.|+|++
T Consensus       191 l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred             hcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEeeC
Confidence            6789999999999985 55443  3678999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=1.5e-10  Score=96.80  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=49.2

Q ss_pred             CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEecccccccee-eecCCceeEEEEe
Q 016710          170 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRL-CIIAQDVQEVSIQ  248 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~-~~~~p~L~~L~l~  248 (384)
                      .+++|++|+++++.+++-.  . +..+|+|+.|.+.++.......+..+++|+.|.+.++...... ...+++|+.|.++
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~  136 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  136 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             cCCCcCcCccccccccCcc--c-ccCCcccccccccccccccccccccccccccccccccccccccccchhhhhHHhhhh
Confidence            3444455554444441110  1 3344555555555443322222334444555554444311100 0123344444443


Q ss_pred             CcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          249 GPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       249 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      ++..... ..+..+++|+.|++.++.+++-   .-+.++++|++|+++++
T Consensus       137 ~n~l~~~-~~l~~~~~L~~L~l~~n~l~~l---~~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         137 SNTISDI-SALSGLTSLQQLNFSSNQVTDL---KPLANLTTLERLDISSN  182 (199)
T ss_dssp             SSCCCCC-GGGTTCTTCSEEECCSSCCCCC---GGGTTCTTCCEEECCSS
T ss_pred             hhhhccc-ccccccccccccccccccccCC---ccccCCCCCCEEECCCC
Confidence            3321111 1234455555555555544331   11344555555555554

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.1e-11  Score=74.82  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=33.3

Q ss_pred             cCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhc
Q 016710           10 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWH   45 (384)
Q Consensus        10 is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~   45 (384)
                      ++.||+||+.+||+|||.+|++++++|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999998754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=1.1e-09  Score=100.56  Aligned_cols=184  Identities=15%  Similarity=0.157  Sum_probs=127.4

Q ss_pred             ccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEE
Q 016710          147 ILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE  225 (384)
Q Consensus       147 l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~  225 (384)
                      ...++++..+.++++.+. .+....+++|++|+++++.+.+-   ..+..+++|+.|++.+|.......+..+++|+.|+
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  269 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  269 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc---chhhcccccchhccccCccCCCCcccccccCCEee
Confidence            345788888888887655 23334678899999988877331   12567889999999888654444566778999999


Q ss_pred             ecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccc
Q 016710          226 VCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS  303 (384)
Q Consensus       226 l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~  303 (384)
                      ++++.  .+.. ....+.++.+....+..... ..+..+++++.|+++++.+.+-.   -+..+|+|++|++++|. ++.
T Consensus       270 l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~-~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~-l~~  343 (384)
T d2omza2         270 LGANQISNISP-LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNK-VSD  343 (384)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC-GGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSC-CCC
T ss_pred             ccCcccCCCCc-cccccccccccccccccccc-cccchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCC-CCC
Confidence            88775  2222 12456777777766543221 23567889999999988876522   26778999999999985 332


Q ss_pred             c--ccCCCcccEEeccccccceee--cccCCCCceeEEecc
Q 016710          304 I--NISSRSLKLLEIYDCLRLVEV--KIAASSLSIFKYSGD  340 (384)
Q Consensus       304 ~--~~~~~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~~  340 (384)
                      +  ...+++|++|+++++ .+..+  ..++++|++|++++|
T Consensus       344 l~~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 VSSLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CGGGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred             ChhHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence            2  235689999999876 44443  367899999999876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.02  E-value=5.1e-10  Score=93.50  Aligned_cols=156  Identities=19%  Similarity=0.171  Sum_probs=115.8

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEE
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~  203 (384)
                      .++++|++..++  ...+. .+..+++|++|+++++.+. .+....+++|+.|+++++.+ ....    +..++.|+.|.
T Consensus        40 ~~l~~L~l~~~~--i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~----l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLG--IKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEE
T ss_pred             cCCCEEECCCCC--CCCcc-ccccCCCcCcCccccccccCcccccCCcccccccccccccccccc----ccccccccccc
Confidence            688888875443  23333 3567999999999998776 33344799999999999987 3222    56899999999


Q ss_pred             eeeCCCCceeecCCCCCCceEEeccccccceee--ecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHH
Q 016710          204 LQLCPGLKNLELSGLTKLNKFEVCDAEELQRLC--IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC  281 (384)
Q Consensus       204 L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  281 (384)
                      +.++.......+..+++|+.|+++++. +..+.  ...++|+.|.+.++...... .+.++++|++|+++++.+++-   
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i---  187 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDI---  187 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC---
T ss_pred             ccccccccccccchhhhhHHhhhhhhh-hcccccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCC---
Confidence            998876654456678999999999885 22222  26789999999887643332 367899999999999987652   


Q ss_pred             HHhccCCCcceE
Q 016710          282 NQISKFPLLESL  293 (384)
Q Consensus       282 ~l~~~~p~L~~L  293 (384)
                      ..+.++++|++|
T Consensus       188 ~~l~~L~~L~~L  199 (199)
T d2omxa2         188 SVLAKLTNLESL  199 (199)
T ss_dssp             GGGGGCTTCSEE
T ss_pred             ccccCCCCCCcC
Confidence            235678888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.02  E-value=9.4e-10  Score=92.65  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=16.0

Q ss_pred             cCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710          261 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       261 ~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      .+++|+.+++.++.+++-  . -+.++++|+.|+++++
T Consensus       154 ~l~~L~~l~l~~n~l~~i--~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         154 RLTKLDTLSLEDNQISDI--V-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             GCTTCSEEECCSSCCCCC--G-GGTTCTTCCEEECCSS
T ss_pred             cccccccccccccccccc--c-cccCCCCCCEEECCCC
Confidence            345555555555544321  1 1334555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.98  E-value=1.1e-09  Score=92.33  Aligned_cols=162  Identities=19%  Similarity=0.131  Sum_probs=117.0

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      ..++++++..+.  ...++ .+..+++|++|+++++.+. .+....+++|+.|+++++.+.+  +. -+..+++|+.|.+
T Consensus        46 ~~L~~L~l~~~~--i~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCC--CCCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--cc-ccccccccccccc
Confidence            367888775433  23333 3567999999999998776 3333479999999999998843  12 2667999999999


Q ss_pred             eeCCCCceeecCCCCCCceEEecccccc-ceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHH
Q 016710          205 QLCPGLKNLELSGLTKLNKFEVCDAEEL-QRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQ  283 (384)
Q Consensus       205 ~~c~~~~~~~i~~~~~L~~L~l~~~~~l-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l  283 (384)
                      .++.......+..+++++.+.+.++.-. .......++|+.+.+.++...... .+..+++|+.|+++++.+++  + .-
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~~--l-~~  195 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--L-RA  195 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB--C-GG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccCCCCCCEEECCCCCCCC--C-hh
Confidence            9886554334556789999999887511 111235789999999887643322 36789999999999998764  2 24


Q ss_pred             hccCCCcceEeecc
Q 016710          284 ISKFPLLESLLIAG  297 (384)
Q Consensus       284 ~~~~p~L~~L~l~~  297 (384)
                      +.++++|+.|+|++
T Consensus       196 l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         196 LAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCSEEEEEE
T ss_pred             hcCCCCCCEEEccC
Confidence            67889999999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.96  E-value=1.2e-09  Score=97.67  Aligned_cols=215  Identities=13%  Similarity=0.091  Sum_probs=127.6

Q ss_pred             CCcEEEEEeCCC-CCcccCccccCCCCccEEEecCe-eec--CCCcc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          127 NVKELSLELLGN-PRFNLPEIILCSNSIEILTLAGL-KLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       127 ~l~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~-~l~--~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      +|++|+|..... +...+|..+..+++|++|+|+++ .+.  .|... .+++|++|+|+++.+.... .......+.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-cccccchhhhcc
Confidence            577777765432 33478889999999999999874 343  44433 7999999999999872211 122556888999


Q ss_pred             EEeeeCCCCce--eecCCCCCCceEEecccccccee---eecCCc-eeEEEEeCcccccc-eeccccCccCcEEEeeccc
Q 016710          202 LSLQLCPGLKN--LELSGLTKLNKFEVCDAEELQRL---CIIAQD-VQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTH  274 (384)
Q Consensus       202 L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~~l~~~---~~~~p~-L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~  274 (384)
                      +.+..+.....  ..+..+++|+.+.+.++.....+   ....++ ++.+.+.++..... +..+..+ ....+++..+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            99987643322  13456788999998887522111   112233 35565555432111 1112222 23345555443


Q ss_pred             cchHHHHHHhccCCCcceEeeccccccccc--ccCCCcccEEeccccccceee---cccCCCCceeEEecccccc
Q 016710          275 IKDEWLCNQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVISF  344 (384)
Q Consensus       275 ~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~~~  344 (384)
                      .... +......+++|+.++++++..-..+  ....++|++|+++++.-...+   ...+++|++|++++|.++.
T Consensus       209 ~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         209 LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             EEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            3221 2344566778888888776522222  123478888888765422233   3567888888888887653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.8e-09  Score=94.39  Aligned_cols=180  Identities=20%  Similarity=0.104  Sum_probs=90.1

Q ss_pred             EeCCCCCcccCccccCCCCccEEEecCeeec-CC-Cc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCC
Q 016710          134 ELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL  210 (384)
Q Consensus       134 ~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~-~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~  210 (384)
                      +..+.+...+|..+.  +++++|+|+++.+. .+ .. ..+++|++|+|+++.++.  +. ....+++|+.|+++++...
T Consensus        16 ~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~l~   90 (266)
T d1p9ag_          16 NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQLQ   90 (266)
T ss_dssp             ECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSCCS
T ss_pred             EccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--cc-ccccccccccccccccccc
Confidence            333444556776553  57888888887665 22 22 257788888887776631  11 1235677777777766432


Q ss_pred             ce-eecCCCCCCceEEeccccccceeeecCCceeEEEEeCccccc-ceeccccCccCcEEEeeccccchHHHHHHhccCC
Q 016710          211 KN-LELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFP  288 (384)
Q Consensus       211 ~~-~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p  288 (384)
                      .. .....+++|+.|++.++.                     ... ....+..+++++.|.+.++.+..- ....+..++
T Consensus        91 ~~~~~~~~l~~L~~L~l~~~~---------------------~~~~~~~~~~~l~~l~~L~l~~n~l~~l-~~~~~~~l~  148 (266)
T d1p9ag_          91 SLPLLGQTLPALTVLDVSFNR---------------------LTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTP  148 (266)
T ss_dssp             SCCCCTTTCTTCCEEECCSSC---------------------CCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCT
T ss_pred             ccccccccccccccccccccc---------------------cceeecccccccccccccccccccccee-ccccccccc
Confidence            21 122345566666665553                     111 011123345555555555443211 112233455


Q ss_pred             CcceEeeccccccccc----ccCCCcccEEeccccccceeec---ccCCCCceeEEecccc
Q 016710          289 LLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVI  342 (384)
Q Consensus       289 ~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~  342 (384)
                      +|+.|+++++. +..+    ....++|++|+|++.. +..++   ...++|+.|++++|+.
T Consensus       149 ~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         149 KLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cchhccccccc-ccccCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCCC
Confidence            55566555543 1111    1233556666665432 33333   2356666666666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.2e-09  Score=94.70  Aligned_cols=199  Identities=17%  Similarity=0.111  Sum_probs=132.3

Q ss_pred             CcccCccccCCCCccEEEecCeeec-CC-Cc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee---
Q 016710          140 RFNLPEIILCSNSIEILTLAGLKLE-SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL---  213 (384)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~l~-~~-~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~---  213 (384)
                      ..++|..+.  +++++|+|+++.+. .+ .. ..+++|++|+++++.+..... .....++.++.+.+........+   
T Consensus        23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~-~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccch
Confidence            456665543  56889999988765 22 22 368899999998887722111 22456778888877665555433   


Q ss_pred             ecCCCCCCceEEeccccc--cce-eeecCCceeEEEEeCcccccce-eccccCccCcEEEeeccccchHHHHHHhccCCC
Q 016710          214 ELSGLTKLNKFEVCDAEE--LQR-LCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPL  289 (384)
Q Consensus       214 ~i~~~~~L~~L~l~~~~~--l~~-~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~  289 (384)
                      .+..+++|+.|++.++..  +.. .....++|+.+.+.++...... ..+..+++|++|++.++.+..- ....+.++++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l-~~~~f~~l~~  178 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHS  178 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc-chhhhccccc
Confidence            345678899999998862  111 1124668899998887643332 2356678999999998876532 1245677899


Q ss_pred             cceEeeccccccc---ccccCCCcccEEecccccc--ce-eecccCCCCceeEEecccc
Q 016710          290 LESLLIAGCDDLK---SINISSRSLKLLEIYDCLR--LV-EVKIAASSLSIFKYSGDVI  342 (384)
Q Consensus       290 L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~--l~-~~~~~~~~L~~L~l~~~~~  342 (384)
                      |+.++++++....   .....+++|++|+++++.-  +. .....+++|++|++++|++
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            9999998876332   1223458999999986542  22 3346799999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.91  E-value=5.8e-09  Score=92.82  Aligned_cols=206  Identities=15%  Similarity=0.097  Sum_probs=97.4

Q ss_pred             CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec--CCCcc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710          126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY  201 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~--~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  201 (384)
                      ++++.|+|+.  +...++|. .+..+++|++|+++++.+.  .+... .+++|++|++.++.+..-.    ...++.++.
T Consensus        31 ~~l~~L~Ls~--N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~----~~~~~~l~~  104 (305)
T d1xkua_          31 PDTALLDLQN--NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQE  104 (305)
T ss_dssp             TTCCEEECCS--SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC----SSCCTTCCE
T ss_pred             CCCCEEECcC--CcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCc----cchhhhhhh
Confidence            4677776643  33456665 3445777777777776554  22222 5777777777777652110    123455666


Q ss_pred             EEeeeCCCCce--eecCCCCCCceEEeccccc-c----ceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccc
Q 016710          202 LSLQLCPGLKN--LELSGLTKLNKFEVCDAEE-L----QRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH  274 (384)
Q Consensus       202 L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~~-l----~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~  274 (384)
                      |.+..+.....  ......+.+..+.+..... .    .......++|+.+.+.++.....+  ...+++|+.|++.++.
T Consensus       105 L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~--~~~~~~L~~L~l~~n~  182 (305)
T d1xkua_         105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--QGLPPSLTELHLDGNK  182 (305)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--SSCCTTCSEEECTTSC
T ss_pred             hhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC--cccCCccCEEECCCCc
Confidence            66655432210  0111223344444433320 0    000112345555555544321111  1224556666665554


Q ss_pred             cchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccceeec---ccCCCCceeEEecccc
Q 016710          275 IKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVI  342 (384)
Q Consensus       275 ~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~  342 (384)
                      ..... ...+.+++.++.|+++++. ++.+    ...+++|++|+++++ .+..++   ..+++|++|++++|++
T Consensus       183 ~~~~~-~~~~~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         183 ITKVD-AASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             CCEEC-TGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred             CCCCC-hhHhhcccccccccccccc-ccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCcc
Confidence            33221 2234455666666665543 2111    123456666666654 233332   3456666666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=9e-09  Score=94.22  Aligned_cols=181  Identities=17%  Similarity=0.167  Sum_probs=129.2

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecC-CCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES-PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      ++++.+.+....  ...++. ...+++|++|+++++.+.. +....+++|+.|++.++.+..-.   -+..+++|+.|.+
T Consensus       197 ~~~~~l~l~~n~--i~~~~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l  270 (384)
T d2omza2         197 TNLESLIATNNQ--ISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKL  270 (384)
T ss_dssp             TTCSEEECCSSC--CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCSEEEC
T ss_pred             cccceeeccCCc--cCCCCc-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC---cccccccCCEeec
Confidence            456666654322  222222 3457899999999987763 33347999999999999883211   1667999999999


Q ss_pred             eeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHH
Q 016710          205 QLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN  282 (384)
Q Consensus       205 ~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  282 (384)
                      .++.......+..++.++.+.+..+.  .+.. ....++++.|+++++...... .+..+++|+.|++++|.+++-  . 
T Consensus       271 ~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l--~-  345 (384)
T d2omza2         271 GANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDV--S-  345 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCC--G-
T ss_pred             cCcccCCCCccccccccccccccccccccccc-cchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCC--h-
Confidence            88765443345677899999998875  2221 236789999999887644332 367899999999999987652  2 


Q ss_pred             HhccCCCcceEeeccccccccc--ccCCCcccEEeccc
Q 016710          283 QISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYD  318 (384)
Q Consensus       283 l~~~~p~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~  318 (384)
                      .+.++++|+.|+++++. ++.+  ...+++|+.|+|++
T Consensus       346 ~l~~l~~L~~L~l~~N~-l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         346 SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             GGGGCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCC
T ss_pred             hHcCCCCCCEEECCCCc-CCCChhhccCCCCCEeeCCC
Confidence            36789999999999875 3333  24568999999975

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.86  E-value=1.2e-08  Score=90.59  Aligned_cols=211  Identities=15%  Similarity=0.143  Sum_probs=144.4

Q ss_pred             CCCcEEEEEeCCCCCccc-CccccCCCCccEEEecCeeecCCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710          126 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL  204 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L  204 (384)
                      .+++++++..+.  ...+ |..+..+++|++|+++++.+..-....++.++.|.+.++.+..-.. ......+.+..+..
T Consensus        55 ~~L~~L~l~~n~--~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~-~~~~~~~~~~~l~~  131 (305)
T d1xkua_          55 KNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK-SVFNGLNQMIVVEL  131 (305)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCH-HHHTTCTTCCEEEC
T ss_pred             cccccccccccc--ccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhh-hhhhcccccccccc
Confidence            688888886433  3444 4456679999999999987762223357789999999887732211 22456777888877


Q ss_pred             eeCCCCce----eecCCCCCCceEEeccccccceee-ecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchH
Q 016710          205 QLCPGLKN----LELSGLTKLNKFEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDE  278 (384)
Q Consensus       205 ~~c~~~~~----~~i~~~~~L~~L~l~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~  278 (384)
                      ..+.....    .....+++|+.+.+.++. +..+. ...++|+.|++.++..... ...+..++.++.|+++++.+...
T Consensus       132 ~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~  210 (305)
T d1xkua_         132 GTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  210 (305)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             ccccccccCCCccccccccccCccccccCC-ccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccc
Confidence            76543311    123356789999999885 22222 2467999999988663322 23467789999999998876643


Q ss_pred             HHHHHhccCCCcceEeeccccccccc---ccCCCcccEEeccccccceee----------cccCCCCceeEEeccccc
Q 016710          279 WLCNQISKFPLLESLLIAGCDDLKSI---NISSRSLKLLEIYDCLRLVEV----------KIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       279 ~~~~l~~~~p~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~c~~l~~~----------~~~~~~L~~L~l~~~~~~  343 (384)
                      . ...+.++++|+.|+++++. ++.+   ...+++|++|+++++. +..+          ....++|+.|++++|++.
T Consensus       211 ~-~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         211 D-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             C-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             c-cccccccccceeeeccccc-ccccccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            2 3456789999999999985 4433   2346899999999753 3332          234788999999999763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.86  E-value=2.5e-09  Score=95.66  Aligned_cols=211  Identities=11%  Similarity=0.062  Sum_probs=138.7

Q ss_pred             CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710          126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL  202 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  202 (384)
                      ..+++|+|..+..-...+|..+..+++|++|+|+++.+.  .+. ...+++|+.+++.++.+... +...+..++.|+.+
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCccccee
Confidence            799999997533223468999999999999999998765  232 33689999999998876221 11236679999999


Q ss_pred             EeeeCCCCcee--ecCCCCCC-ceEEecccccccee---eecCCceeEEEEeCccc-ccceeccccCccCcEEEeecccc
Q 016710          203 SLQLCPGLKNL--ELSGLTKL-NKFEVCDAEELQRL---CIIAQDVQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHI  275 (384)
Q Consensus       203 ~L~~c~~~~~~--~i~~~~~L-~~L~l~~~~~l~~~---~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~  275 (384)
                      .+.++.....+  .+..++.+ +.+.+..+. +...   .........+.+..... ...+.....+++++.+++.++.+
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~-l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ecccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99988654322  12233444 667766653 1111   11222334555544431 12233456688999999988876


Q ss_pred             chHHHHHHhccCCCcceEeecccccc---cccccCCCcccEEeccccccce-eecc--cCCCCceeEEeccc
Q 016710          276 KDEWLCNQISKFPLLESLLIAGCDDL---KSINISSRSLKLLEIYDCLRLV-EVKI--AASSLSIFKYSGDV  341 (384)
Q Consensus       276 ~~~~~~~l~~~~p~L~~L~l~~c~~l---~~~~~~~~~L~~L~l~~c~~l~-~~~~--~~~~L~~L~l~~~~  341 (384)
                      ...  ...+..+++|+.|+++++.-.   ......+++|++|+|+++. +. .++.  .+.+|+.+++.+|+
T Consensus       234 ~~~--~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~-l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         234 AFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ccc--ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc-ccccCCCcccCCCCCHHHhCCCc
Confidence            543  234567899999999987632   2333456899999999763 33 5553  46788888888876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4.8e-09  Score=91.55  Aligned_cols=166  Identities=17%  Similarity=0.103  Sum_probs=101.7

Q ss_pred             CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710          126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS  203 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  203 (384)
                      +++++|+|+.  +....+|. .+..+++|++|+|+++.+. .+....+++|++|+|+++.+...  ...+...+.|+.|+
T Consensus        31 ~~l~~L~Ls~--N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSE--NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTT--SCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEE
T ss_pred             cCCCEEECcC--CcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence            5789888753  34556665 4557999999999998776 33445799999999999987321  22356789999999


Q ss_pred             eeeCCCCce--eecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccccccee-ccccCccCcEEEeeccccc
Q 016710          204 LQLCPGLKN--LELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIK  276 (384)
Q Consensus       204 L~~c~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~  276 (384)
                      +.++.....  .....+++++.|.+.++. +..+.    ...++++.++++++....... .+..+++|++|+|++|.++
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            998865432  223356688888888764 11111    234556666665554322221 2344566666666655543


Q ss_pred             hHHHHHHhccCCCcceEeeccc
Q 016710          277 DEWLCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       277 ~~~~~~l~~~~p~L~~L~l~~c  298 (384)
                      .  +..-+..+++|+.|++++.
T Consensus       186 ~--lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         186 T--IPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             C--CCTTTTTTCCCSEEECCSC
T ss_pred             c--cChhHCCCCCCCEEEecCC
Confidence            1  1112233455555655553

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=8e-10  Score=81.68  Aligned_cols=43  Identities=30%  Similarity=0.334  Sum_probs=38.9

Q ss_pred             CCCCCccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhh
Q 016710            2 ESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAW   44 (384)
Q Consensus         2 ~~~~~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw   44 (384)
                      +.+-..|.|+.||+||+.+||+|||.+|+++++.|||+|+.+.
T Consensus        11 ~p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             CchhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4455689999999999999999999999999999999999754

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=4.7e-10  Score=82.54  Aligned_cols=39  Identities=26%  Similarity=0.503  Sum_probs=36.2

Q ss_pred             ccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhc
Q 016710            7 IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWH   45 (384)
Q Consensus         7 ~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~   45 (384)
                      .|.|+.||+||+.+||+|||.+|++++++|||+|+++..
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999997653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.72  E-value=5.1e-08  Score=87.73  Aligned_cols=54  Identities=20%  Similarity=0.133  Sum_probs=28.0

Q ss_pred             CCCcceEeecccccccccccCCCcccEEeccccccceeecccCCCCceeEEecccc
Q 016710          287 FPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVI  342 (384)
Q Consensus       287 ~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~  342 (384)
                      +|+|++|++++|. +..+....++|+.|+++++ .+..++..+++|++|++++|++
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVEYNPL  336 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCc-cCccccccCCCCEEECCCC-cCCccccccCCCCEEECcCCcC
Confidence            4555666665553 3333334455666665544 3444444455566666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.58  E-value=4.8e-08  Score=88.26  Aligned_cols=231  Identities=16%  Similarity=0.076  Sum_probs=144.4

Q ss_pred             hhHHHHHHHHH-hCCCcEEEEEeCCCC---CcccCccccCCCCccEEEecCeeecCC------------C-ccCCCCCCe
Q 016710          114 PYIDQCIFYAL-GCNVKELSLELLGNP---RFNLPEIILCSNSIEILTLAGLKLESP------------R-SVKLSSLTK  176 (384)
Q Consensus       114 ~~~~~~l~~~~-~~~l~~L~l~~~~~~---~~~lp~~l~~~~~L~~L~L~~~~l~~~------------~-~~~~~~L~~  176 (384)
                      ++...++.... ...+++|+|+.....   ...+...+...++|+.|++.++.....            . ...+++|+.
T Consensus        18 e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~   97 (344)
T d2ca6a1          18 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   97 (344)
T ss_dssp             HHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccc
Confidence            45555444333 367888777432211   123334455678888888876533210            0 114688999


Q ss_pred             EEeeeeecChH---HHHHHHcCCCCccEEEeeeCCCCc-----------ee----ecCCCCCCceEEecccc----ccce
Q 016710          177 LFLMRVDATDL---VLQSLLIGCPLIEYLSLQLCPGLK-----------NL----ELSGLTKLNKFEVCDAE----ELQR  234 (384)
Q Consensus       177 L~L~~~~~~~~---~l~~l~~~~p~Le~L~L~~c~~~~-----------~~----~i~~~~~L~~L~l~~~~----~l~~  234 (384)
                      |+|+++.+++.   .+...+..++.|+.|.+.+|....           ..    .....+.|+.|.+.++.    ....
T Consensus        98 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1          98 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             ccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc
Confidence            99988887443   344455678889999998875321           00    01234688888888764    1111


Q ss_pred             e---eecCCceeEEEEeCccccc------ceeccccCccCcEEEeeccccchHH---HHHHhccCCCcceEeeccccccc
Q 016710          235 L---CIIAQDVQEVSIQGPLPFQ------CKFNLASCKFLKYLRFALTHIKDEW---LCNQISKFPLLESLLIAGCDDLK  302 (384)
Q Consensus       235 ~---~~~~p~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~L~~~~~~~~~---~~~l~~~~p~L~~L~l~~c~~l~  302 (384)
                      +   ....++|+.|++.++....      ....+..+++|+.|+++++.+++..   +...+..+++|++|++++|..-.
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            1   1246789999987765322      1113567899999999999887654   34556789999999999987221


Q ss_pred             ----ccc-----cCCCcccEEeccccccce-----eec----ccCCCCceeEEeccccccc
Q 016710          303 ----SIN-----ISSRSLKLLEIYDCLRLV-----EVK----IAASSLSIFKYSGDVISFQ  345 (384)
Q Consensus       303 ----~~~-----~~~~~L~~L~l~~c~~l~-----~~~----~~~~~L~~L~l~~~~~~~~  345 (384)
                          .+.     ...+.|++|+|+++. +.     .+.    ..+++|++|++++|.+..+
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence                111     134689999998653 22     111    3588999999999987554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.53  E-value=6.7e-08  Score=87.29  Aligned_cols=203  Identities=17%  Similarity=0.142  Sum_probs=135.7

Q ss_pred             ccCccccCCCCccEEEecCeeecC------C-CccCCCCCCeEEeeeeecC------hH---HHHHHHcCCCCccEEEee
Q 016710          142 NLPEIILCSNSIEILTLAGLKLES------P-RSVKLSSLTKLFLMRVDAT------DL---VLQSLLIGCPLIEYLSLQ  205 (384)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~l~~------~-~~~~~~~L~~L~L~~~~~~------~~---~l~~l~~~~p~Le~L~L~  205 (384)
                      .+...+....+|++|+|+++.+..      . .....++|+.|++.++...      ..   .+...+..|++|+.|+|.
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            344455568999999999987651      1 1235799999999987541      12   234446679999999999


Q ss_pred             eCCCCc----ee--ecCCCCCCceEEeccccc-----------ccee-----eecCCceeEEEEeCccccc-----ceec
Q 016710          206 LCPGLK----NL--ELSGLTKLNKFEVCDAEE-----------LQRL-----CIIAQDVQEVSIQGPLPFQ-----CKFN  258 (384)
Q Consensus       206 ~c~~~~----~~--~i~~~~~L~~L~l~~~~~-----------l~~~-----~~~~p~L~~L~l~~~~~~~-----~~~~  258 (384)
                      +|..-.    .+  .+...++|+.|.+.+|.-           +...     ....+.|+.+.+.++....     ....
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            885321    11  122457999999998851           0111     1246788999987765221     1112


Q ss_pred             cccCccCcEEEeeccccchHHHH----HHhccCCCcceEeecccccc-------cccccCCCcccEEecccccc----ce
Q 016710          259 LASCKFLKYLRFALTHIKDEWLC----NQISKFPLLESLLIAGCDDL-------KSINISSRSLKLLEIYDCLR----LV  323 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~~~~~~~~----~l~~~~p~L~~L~l~~c~~l-------~~~~~~~~~L~~L~l~~c~~----l~  323 (384)
                      +..++.|+.|++..+.+++..+.    ..+..+++|+.|+++++..-       ......+++|++|.+++|.-    ..
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            45678999999999998876433    34677899999999987521       12234578999999998741    11


Q ss_pred             eec-----ccCCCCceeEEecccccc
Q 016710          324 EVK-----IAASSLSIFKYSGDVISF  344 (384)
Q Consensus       324 ~~~-----~~~~~L~~L~l~~~~~~~  344 (384)
                      .+.     ...+.|++|++++|.+..
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCCh
Confidence            221     135789999999998743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.7e-08  Score=78.96  Aligned_cols=126  Identities=17%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             CCCCccEEEecCeeec-CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710          149 CSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV  226 (384)
Q Consensus       149 ~~~~L~~L~L~~~~l~-~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l  226 (384)
                      .+.++++|+|+++.+. .+.. ..+++|++|+|+++.+..-  .. ++.+|+|+.|++++|.... +..           
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~-~~~l~~L~~L~ls~N~i~~-l~~-----------   80 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNRICR-IGE-----------   80 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSCCCE-ECS-----------
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CC-cccCcchhhhhcccccccC-CCc-----------
Confidence            4556777777777665 2222 2466666666666655210  01 3445555555555543221 110           


Q ss_pred             ccccccceeeecCCceeEEEEeCcccccce--eccccCccCcEEEeeccccchHH--HHHHhccCCCcceEeec
Q 016710          227 CDAEELQRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDEW--LCNQISKFPLLESLLIA  296 (384)
Q Consensus       227 ~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~--~~~l~~~~p~L~~L~l~  296 (384)
                             .+...+|+|+.|+++++......  ..+..+++|++|++.+|.++...  ...++..+|+|+.|+-.
T Consensus        81 -------~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          81 -------GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             -------CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             -------cccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence                   00112444555555444322111  13456677777777777654321  12345567777777643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2e-07  Score=81.76  Aligned_cols=188  Identities=16%  Similarity=0.122  Sum_probs=119.4

Q ss_pred             CCCcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCcc
Q 016710          126 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIE  200 (384)
Q Consensus       126 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le  200 (384)
                      ..+++|+|+.  +...++|.. +..+++|++|+++++.+.  .+ ....++.++.+....... ..- -...+..+++|+
T Consensus        32 ~~~~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRIFLHG--NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLH  108 (284)
T ss_dssp             TTCSEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred             CCCCEEECcC--CcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc-cchhhcccccCC
Confidence            4677777753  345566654 556889999999887655  22 222567777776654332 111 012256788899


Q ss_pred             EEEeeeCCCCc--eeecCCCCCCceEEeccccccceee---e-cCCceeEEEEeCcccccce-eccccCccCcEEEeecc
Q 016710          201 YLSLQLCPGLK--NLELSGLTKLNKFEVCDAEELQRLC---I-IAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALT  273 (384)
Q Consensus       201 ~L~L~~c~~~~--~~~i~~~~~L~~L~l~~~~~l~~~~---~-~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~  273 (384)
                      .|++.++....  .......++|+.+++.+.. +..+.   + ..++|+.|++.++...... -.+.++++|+.+.+.++
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            99998875432  1123345688888888764 22221   2 4678889988887643322 23567889999999888


Q ss_pred             ccchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccc
Q 016710          274 HIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYD  318 (384)
Q Consensus       274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~  318 (384)
                      .++.-. ...+..+++|+.|+++++....   .....+++|++|++++
T Consensus       188 ~l~~i~-~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         188 RVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             cccccC-hhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            765422 3456778899999998866322   1233568899999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5e-07  Score=76.94  Aligned_cols=87  Identities=13%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             ccCccccCCCCccEEEecCeeec-C-CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceee---c
Q 016710          142 NLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---L  215 (384)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~l~-~-~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~---i  215 (384)
                      .+|..+.  +++++|+++++.+. . +.. ..+++|++|+++++.+....-...+..++.++++.+..+.......   +
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            4444332  35666666665544 2 222 2466666666666644111001113445666666665554443322   2


Q ss_pred             CCCCCCceEEecccc
Q 016710          216 SGLTKLNKFEVCDAE  230 (384)
Q Consensus       216 ~~~~~L~~L~l~~~~  230 (384)
                      .++++|+.|.+.++.
T Consensus       100 ~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1         100 QNLPNLQYLLISNTG  114 (242)
T ss_dssp             ECCTTCCEEEEESCC
T ss_pred             cccccccccccchhh
Confidence            345666666666653

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.4e-08  Score=76.93  Aligned_cols=40  Identities=28%  Similarity=0.527  Sum_probs=35.9

Q ss_pred             CCCccccCCCC----HHHHHHHhcCCCccceeehhhhhhhhhhh
Q 016710            4 LSHIDRISNLP----EPILHHILSFLPFTQTVQTRVLSRTWKRA   43 (384)
Q Consensus         4 ~~~~d~is~LP----deil~~I~s~L~~~~~~~~~~vskrW~~l   43 (384)
                      +-..|.|+.||    |||+.+||+|||.+|++++++|||+|+++
T Consensus         5 ~l~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           5 MLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             HHcccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34568899998    59999999999999999999999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1e-06  Score=75.00  Aligned_cols=14  Identities=21%  Similarity=0.365  Sum_probs=7.2

Q ss_pred             cCCCCccEEEeeeC
Q 016710          194 IGCPLIEYLSLQLC  207 (384)
Q Consensus       194 ~~~p~Le~L~L~~c  207 (384)
                      ..+++|+.|.+.++
T Consensus       100 ~~l~~L~~l~l~~~  113 (242)
T d1xwdc1         100 QNLPNLQYLLISNT  113 (242)
T ss_dssp             ECCTTCCEEEEESC
T ss_pred             cccccccccccchh
Confidence            44555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.35  E-value=3.9e-06  Score=74.96  Aligned_cols=70  Identities=19%  Similarity=0.105  Sum_probs=55.3

Q ss_pred             CccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEeccccccceeecccCCCCceeEEe
Q 016710          262 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYS  338 (384)
Q Consensus       262 ~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~  338 (384)
                      +++|++|++++|.++.     +...+++|+.|+++++. ++.+....++|++|+++++. +..++...++|+.|++.
T Consensus       283 ~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~~  352 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE-----LPALPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRMN  352 (353)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred             CCCCCEEECCCCccCc-----cccccCCCCEEECCCCc-CCccccccCCCCEEECcCCc-CCCCCccccccCeeECc
Confidence            5799999999987653     33568999999999875 66666666799999999885 77777666789988764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.1e-06  Score=81.53  Aligned_cols=80  Identities=18%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             ccCcEEEeeccccchHHH---HHHhccCCCcceEeecccccccc---------cccCCCcccEEeccccccce-------
Q 016710          263 KFLKYLRFALTHIKDEWL---CNQISKFPLLESLLIAGCDDLKS---------INISSRSLKLLEIYDCLRLV-------  323 (384)
Q Consensus       263 ~~L~~L~L~~~~~~~~~~---~~l~~~~p~L~~L~l~~c~~l~~---------~~~~~~~L~~L~l~~c~~l~-------  323 (384)
                      +.|+.+.+.++.+++...   ...+..+++|++|+++++. +..         +....+.|++|++.+|. +.       
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l  389 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSL  389 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHH
Confidence            457777776666555432   3344566778888887764 211         11234668888888773 33       


Q ss_pred             -eecccCCCCceeEEecccccc
Q 016710          324 -EVKIAASSLSIFKYSGDVISF  344 (384)
Q Consensus       324 -~~~~~~~~L~~L~l~~~~~~~  344 (384)
                       +....+++|++|++++|.++.
T Consensus       390 ~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         390 AATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHhcCCCCCEEECCCCcCCH
Confidence             112457888888888887643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.30  E-value=7.7e-09  Score=86.00  Aligned_cols=77  Identities=16%  Similarity=0.050  Sum_probs=46.3

Q ss_pred             CcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecCh-HHHHHHHcCCCCccEEEee
Q 016710          128 VKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATD-LVLQSLLIGCPLIEYLSLQ  205 (384)
Q Consensus       128 l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~L~  205 (384)
                      ++.+++.........++..+..+++|++|+|+++.+. .+....+++|++|++++|.++. ..+   ...++.|+.|++.
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~---~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL---DAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH---HHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccccccc---ccccccccccccc
Confidence            3444443322234455566667888888888887776 3333367888888888887622 222   2234567777776


Q ss_pred             eC
Q 016710          206 LC  207 (384)
Q Consensus       206 ~c  207 (384)
                      ++
T Consensus       102 ~N  103 (198)
T d1m9la_         102 YN  103 (198)
T ss_dssp             EE
T ss_pred             cc
Confidence            65

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=4.1e-07  Score=69.13  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=18.8

Q ss_pred             cccCccCcEEEeeccccchH--HHHHHhccCCCcceE
Q 016710          259 LASCKFLKYLRFALTHIKDE--WLCNQISKFPLLESL  293 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~p~L~~L  293 (384)
                      +..+++|+.|++.++.+...  ....+...+|+|+.|
T Consensus        86 l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          86 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             hcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            44566777777766654421  122344446666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.24  E-value=3.6e-08  Score=81.81  Aligned_cols=105  Identities=21%  Similarity=0.182  Sum_probs=60.4

Q ss_pred             CCCCCCeEEeeeeecCh-HHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEe
Q 016710          170 KLSSLTKLFLMRVDATD-LVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQ  248 (384)
Q Consensus       170 ~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~  248 (384)
                      .+++|++|+|+++.+.+ ..    +..+++|+.|++++|. ++     .              ++.+....++|+.|++.
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~----l~~l~~L~~L~Ls~N~-i~-----~--------------i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISS----LSGMENLRILSLGRNL-IK-----K--------------IENLDAVADTLEELWIS  101 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCC----HHHHTTCCEEECCEEE-EC-----S--------------CSSHHHHHHHCCEEECS
T ss_pred             cccccceeECcccCCCCccc----ccCCccccChhhcccc-cc-----c--------------ccccccccccccccccc
Confidence            57778888888777622 12    3456677777777662 11     0              11111123445555555


Q ss_pred             CcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710          249 GPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       249 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~  299 (384)
                      ++..... ..+..+++|+.|++++|.+++-.-...+..+|+|+.|++++++
T Consensus       102 ~N~i~~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         102 YNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccc-ccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            5432221 1245567888888888777654333456778888888888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.1e-06  Score=70.10  Aligned_cols=39  Identities=13%  Similarity=-0.015  Sum_probs=20.1

Q ss_pred             cCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710          261 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD  299 (384)
Q Consensus       261 ~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~  299 (384)
                      .+++|+.|++.+|.+.+-.-...+..+|+|++|++++++
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cccccccceeccccccccccccccccccccchhhcCCCc
Confidence            356666666666654432112234455666666665554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=1.1e-06  Score=66.69  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=18.6

Q ss_pred             cccCccCcEEEeeccccchHHHHHHhccCCCcceEeecc
Q 016710          259 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAG  297 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~  297 (384)
                      +..+++|++|++.++.+..-.....+..+|+|+.|++++
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            344555555555555543321112234455555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.53  E-value=3.9e-05  Score=62.45  Aligned_cols=69  Identities=26%  Similarity=0.189  Sum_probs=39.1

Q ss_pred             CCCCcccCccccCCCCccEEEecCeeec--CC-Cc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCC
Q 016710          137 GNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP  208 (384)
Q Consensus       137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  208 (384)
                      +.....+|..+.  +++++|+|+++.+.  .+ .. ..+++|+.|+|+++.+.... ...+...+.|+.|+++++.
T Consensus        17 ~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          17 GRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred             CCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeecccc
Confidence            344556666553  57778888877664  21 22 25777777777777652111 1223456666777666653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.49  E-value=8.2e-05  Score=60.43  Aligned_cols=121  Identities=12%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             cEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce--eecCCCCCCceEEecccc
Q 016710          154 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE  230 (384)
Q Consensus       154 ~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~  230 (384)
                      +.++.++..+. +|... .+++++|+|+++.++...-...+...++|+.|++.++.....  ......++|+.|++++..
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            34555554443 33332 367888888888773322223345678888888887654422  123346788888888774


Q ss_pred             ccceee----ecCCceeEEEEeCccccccee-ccccCccCcEEEeeccccc
Q 016710          231 ELQRLC----IIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIK  276 (384)
Q Consensus       231 ~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~  276 (384)
                       +..+.    ...++|+.|++.++....... .+..+++|++|+|.++.+.
T Consensus        90 -l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             -CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             -ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence             22221    246788888888876443322 3567888999999877654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00015  Score=66.50  Aligned_cols=103  Identities=15%  Similarity=0.140  Sum_probs=68.7

Q ss_pred             CceeEEEEeCcccccc--eeccccCccCcEEEeeccccchHHHH---HHhccCCCcceEeecccccc----cccc----c
Q 016710          240 QDVQEVSIQGPLPFQC--KFNLASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCDDL----KSIN----I  306 (384)
Q Consensus       240 p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~p~L~~L~l~~c~~l----~~~~----~  306 (384)
                      ++|++|++++......  ...++.+++++.|+|.+|.+++..+.   ..+..+|+|+.|+++++..-    ..+.    .
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            5678888877653221  12245678889999998888876544   44577889999999887521    1111    2


Q ss_pred             CCCcccEEeccccccce--------eecccCCCCceeEEeccccc
Q 016710          307 SSRSLKLLEIYDCLRLV--------EVKIAASSLSIFKYSGDVIS  343 (384)
Q Consensus       307 ~~~~L~~L~l~~c~~l~--------~~~~~~~~L~~L~l~~~~~~  343 (384)
                      ...+|++|++++|. +.        .....+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCC-ccccccccccchhhccccccccccccccch
Confidence            23579999998774 32        12246888999999888763

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.95  E-value=0.0006  Score=53.79  Aligned_cols=22  Identities=5%  Similarity=-0.053  Sum_probs=12.2

Q ss_pred             HHHHHHHcCCCCccEEEeeeCC
Q 016710          187 LVLQSLLIGCPLIEYLSLQLCP  208 (384)
Q Consensus       187 ~~l~~l~~~~p~Le~L~L~~c~  208 (384)
                      +.++.+...+|.|++|+|+++.
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~   26 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMK   26 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCC
T ss_pred             HHHHHHHhCCCCCcEEEeCCCC
Confidence            3455555556666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00095  Score=51.94  Aligned_cols=81  Identities=17%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             cccCccCcEEEeeccc-cchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccceeec---ccCC
Q 016710          259 LASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEVK---IAAS  330 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~~---~~~~  330 (384)
                      +..+++|++|++.++. ++.- -...+.++++|+.|+++++. +..+    ....++|++|+|++.. +..++   ....
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~~  103 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGL  103 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSC
T ss_pred             ccCccccCeeecCCCcccccc-CchhhccccccCcceeeccc-cCCcccccccccccccceeccCCC-CcccChhhhccc
Confidence            4455666777665443 3211 12234566777777777654 3222    2234677777776432 22222   2234


Q ss_pred             CCceeEEecccc
Q 016710          331 SLSIFKYSGDVI  342 (384)
Q Consensus       331 ~L~~L~l~~~~~  342 (384)
                      +|++|++++|++
T Consensus       104 ~l~~L~L~~Np~  115 (156)
T d2ifga3         104 SLQELVLSGNPL  115 (156)
T ss_dssp             CCCEEECCSSCC
T ss_pred             cccccccCCCcc
Confidence            677777777765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.55  E-value=0.0014  Score=51.39  Aligned_cols=40  Identities=20%  Similarity=0.076  Sum_probs=23.8

Q ss_pred             cccCccCcEEEee--ccccchHH---HHHHhccCCCcceEeeccc
Q 016710          259 LASCKFLKYLRFA--LTHIKDEW---LCNQISKFPLLESLLIAGC  298 (384)
Q Consensus       259 ~~~~~~L~~L~L~--~~~~~~~~---~~~l~~~~p~L~~L~l~~c  298 (384)
                      +...++|+.++|.  .+.+++..   +...+..+++|++|+++..
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            4456777765553  44565543   3344556777777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0065  Score=46.92  Aligned_cols=13  Identities=15%  Similarity=0.023  Sum_probs=7.5

Q ss_pred             ccCcEEEeecccc
Q 016710          263 KFLKYLRFALTHI  275 (384)
Q Consensus       263 ~~L~~L~L~~~~~  275 (384)
                      .+|+.|+|+++.+
T Consensus       103 ~~l~~L~L~~Np~  115 (156)
T d2ifga3         103 LSLQELVLSGNPL  115 (156)
T ss_dssp             CCCCEEECCSSCC
T ss_pred             ccccccccCCCcc
Confidence            3466666665554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.74  E-value=0.0024  Score=50.18  Aligned_cols=82  Identities=17%  Similarity=0.092  Sum_probs=46.2

Q ss_pred             cccCccCcEEEeeccccchHHH---HHHhccCCCcceEeecccccccc-----c---ccCCCcccEEeccccc--c----
Q 016710          259 LASCKFLKYLRFALTHIKDEWL---CNQISKFPLLESLLIAGCDDLKS-----I---NISSRSLKLLEIYDCL--R----  321 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~p~L~~L~l~~c~~l~~-----~---~~~~~~L~~L~l~~c~--~----  321 (384)
                      +...+.|++|+|+++.+++...   ...+...+.|++|++++|. +..     +   ....+.|++|++++..  .    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            4445667777777776665432   2344556777777777764 221     1   1223667777776432  1    


Q ss_pred             ----ceeecccCCCCceeEEeccc
Q 016710          322 ----LVEVKIAASSLSIFKYSGDV  341 (384)
Q Consensus       322 ----l~~~~~~~~~L~~L~l~~~~  341 (384)
                          +.+.....++|++|.++...
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCC
Confidence                11222446778887776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.06  E-value=0.005  Score=48.07  Aligned_cols=83  Identities=19%  Similarity=0.074  Sum_probs=50.3

Q ss_pred             cccCccCcEEEeeccccchHHHH---HHhccCCCcceEeeccccccc-------ccccCCCcccEEeccccc-cc-----
Q 016710          259 LASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCDDLK-------SINISSRSLKLLEIYDCL-RL-----  322 (384)
Q Consensus       259 ~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~p~L~~L~l~~c~~l~-------~~~~~~~~L~~L~l~~c~-~l-----  322 (384)
                      +...+.|++|+++++.+++....   ..+...+.++.+++++|..-.       ......++|+.++|+.+. .+     
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            34567788888887777665433   344556778888887765221       112234678877776332 11     


Q ss_pred             ---eeecccCCCCceeEEeccc
Q 016710          323 ---VEVKIAASSLSIFKYSGDV  341 (384)
Q Consensus       323 ---~~~~~~~~~L~~L~l~~~~  341 (384)
                         .+....++.|++|++..+.
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCCCcCEEeCcCCC
Confidence               1233468888888886654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.0039  Score=48.62  Aligned_cols=57  Identities=19%  Similarity=0.074  Sum_probs=28.6

Q ss_pred             CCCccEEEecCeeecC-C---Cc-cCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCC
Q 016710          150 SNSIEILTLAGLKLES-P---RS-VKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCP  208 (384)
Q Consensus       150 ~~~L~~L~L~~~~l~~-~---~~-~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~  208 (384)
                      +++|++|+|+++.+.. .   .. ..+++|+.|+|+++.+ +...+.. +. .+.|+.|++.++.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l~-~~~L~~L~L~~Np  126 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IK-GLKLEELWLDGNS  126 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-HT-TCCCSSCCCTTST
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-hh-ccccceeecCCCC
Confidence            5566666666655541 1   11 1356666666666666 3333332 22 3346666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.0099  Score=46.14  Aligned_cols=20  Identities=20%  Similarity=0.112  Sum_probs=14.6

Q ss_pred             HHHHHcCCCCccEEEeeeCC
Q 016710          189 LQSLLIGCPLIEYLSLQLCP  208 (384)
Q Consensus       189 l~~l~~~~p~Le~L~L~~c~  208 (384)
                      +..+...+|.|+.|+++++.
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~   76 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNR   76 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSC
T ss_pred             hHHHHHhCCCCCEeeCCCcc
Confidence            44445678888888888874