Citrus Sinensis ID: 016718

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPAIMVDC
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEccccEEEEEEEEccEEEEcccccEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccHHHHccccccccccccccEEEcccccccEEEEEcHHHHHHHHHHHHHHccccEEcccccccccEEEcccHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHHHHHcccccccccccccccccEEEcccccHHHHHHHHHHcccEEEEEEcccccccccccEEEEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEEEccEEEccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHccccEEEcccccEEEEEEccHHHHHHHHHHHHcccEEcccccccccEEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHHcHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccccccEEcccccccccccEEEEEcHHHHHHHHHHHHHHHccccHHHHccHHHcccccEcccccccccccEEEEccccHHHHHHHHHHHcccEEEEcccEEEEc
Coil and Loop (DISEMBL)
mynsglntghensgvvgsilvpvrfiwpnggrrvslsgsftrwsepmpmspsegcpavfqiicrlppghhqykfyvdgewrhdenqphvsgnygvVNCVYIavpqpdmvpntispetsgnmevddvvmrpegfaqySEADLQLSRDRISSFLSTHTVYEllpdsgkvtaLDVNLAVKQAFHVLYeqglpmvplwddfkgRFVGVLSALDFILILRElgtngsnlteeeLETHTISAWKVGKLQLNLKrqmdgngrpcprplvqagpydsLKEVALKILQnkvatvpiihstgpagscqEILYLASLSDILKCICRhfkhsssslpilqqpvssiqlgtwvprigeangrpfamlrPTASLGSALALLVQGdltlfqqpaimvdc
Flexible Loop (DISEMBL)
mynsglntghensgvvGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTlfqqpaimvdc
Low Complexity Region (SEG)
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPAIMVDC
Disordered region (IsUnstruct)
*************GVVGSILVPVRFIWPNGGRRVSLSGSFTRW**********GCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQ***************************FAQY**ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR**********RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPAI****
Disordered Region (DISOPRED)
********************VPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPAIMVDC
Disordered Region (DISEMBL)
*********HENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRW*********EGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPAIMVDC
Disordered Region (DISPRO)
************SGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVP***********************AQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPAIMVDC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPAIMVDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.960	0.757	0.678	1e-145
Q09138	330	5'-AMP-activated protein	yes	no	0.5	0.581	0.315	2e-17
P54619	331	5'-AMP-activated protein	yes	no	0.5	0.580	0.315	2e-17
P58108	330	5'-AMP-activated protein	yes	no	0.502	0.584	0.307	3e-17
O54950	330	5'-AMP-activated protein	yes	no	0.502	0.584	0.307	3e-17
P80385	330	5'-AMP-activated protein	yes	no	0.502	0.584	0.303	6e-17
Q2LL38	497	5'-AMP-activated protein	no	no	0.494	0.382	0.292	5e-15
Q9MYP4	514	5'-AMP-activated protein	no	no	0.481	0.359	0.286	6e-15
Q5R4S0	524	5'-AMP-activated protein	no	no	0.507	0.372	0.273	9e-15
Q91WG5	566	5'-AMP-activated protein	no	no	0.507	0.344	0.273	1e-14

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  516 bits (1329), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 258/380 (67%), Positives = 302/380 (79%), Gaps = 11/380 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQGDLT 373
           LRP ASLGSALALLVQ +++
Sbjct: 357 LRPHASLGSALALLVQAEVS 376

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 103/222 (46%), Gaps = 30/222 (13%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQ 222

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 103/222 (46%), Gaps = 30/222 (13%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQ 222

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 28/221 (12%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL     +   +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 90  DFINILHRYYKSAL-VQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 136

Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 137 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 190

Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ
Sbjct: 191 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQ 222

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 28/221 (12%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135

Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189

Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ
Sbjct: 190 KSLQELQIGTY------AN---IAMVRTTTPVYVALGIFVQ 221

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score = 89.0 bits (219), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 28/221 (12%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135

Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189

Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQ 221

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

>sp|Q2LL38|AAKG3_BOVIN 5'-AMP-activated protein kinase subunit gamma-3 OS=Bos taurus GN=PRKAG3 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 98/219 (44%), Gaps = 29/219 (13%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+  HT Y+ +  S K+   D  L +K+AF  L   G+   PLWD  K  FVG+L+  DF
Sbjct: 194 FMQEHTCYDAMATSSKLVIFDTMLQIKKAFFALVANGVRAAPLWDSKKQSFVGMLTITDF 253

Query: 211 ILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDS 269
           IL+L       S L +  E+E H I  W+   LQ             C +PLV   P DS
Sbjct: 254 ILVLHRY--YRSPLVQIYEIEEHKIETWREIYLQ------------GCFKPLVSISPSDS 299

Query: 270 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ 329
           L E    +++N++  +P++     +G+   IL    L   L    R      S    L +
Sbjct: 300 LFEAVYTLIKNRIHRLPVLDPV--SGAVLHILTHKRLLKFLHIFQRTLLPRPS---FLYR 354

Query: 330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV 368
            +  + +GT+         R  A++  TA + +AL + V
Sbjct: 355 TIQDLGIGTF---------RDLAVVLETAPILTALDIFV 384

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|Q9MYP4|AAKG3_PIG 5'-AMP-activated protein kinase subunit gamma-3 OS=Sus scrofa GN=PRKAG3 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 38/223 (17%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+  HT Y+ +  S K+   D  L +K+AF  L   G+   PLWD  K  FVG+L+  DF
Sbjct: 212 FMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGMLTITDF 271

Query: 211 ILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDS 269
           IL+L       S L +  E+E H I  W+   LQ             C +PLV   P DS
Sbjct: 272 ILVLHRY--YRSPLVQIYEIEEHKIETWREIYLQ------------GCFKPLVSISPNDS 317

Query: 270 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL----P 325
           L E    +++N++  +P++     A     +L++ +   +LK     F H   +L     
Sbjct: 318 LFEAVYALIKNRIHRLPVLDPVSGA-----VLHILTHKRLLK-----FLHIFGTLLPRPS 367

Query: 326 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV 368
            L + +  + +GT+         R  A++  TA + +AL + V
Sbjct: 368 FLYRTIQDLGIGTF---------RDLAVVLETAPILTALDIFV 401

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 28/223 (12%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 219 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 278

Query: 211 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 270
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 279 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 325

Query: 271 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 326 LDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 379

Query: 331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLT 373
           +  + +GT+            A + P   +  AL + V+  ++
Sbjct: 380 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRIS 413

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 28/223 (12%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 320

Query: 211 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 270
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 321 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 367

Query: 271 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 368 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 421

Query: 331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLT 373
           +  + +GT+            A + P   +  AL + V+  ++
Sbjct: 422 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRIS 455

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.960	0.765	0.704	1e-150
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.958	0.754	0.689	1e-148
255542654	540	AMP-activated protein kinase, gamma regu	0.950	0.675	0.689	1e-146
18390971	487	sucrose nonfermenting 4-like protein [Ar	0.960	0.757	0.678	1e-144
297849192	479	hypothetical protein ARALYDRAFT_470981 [	0.953	0.764	0.685	1e-143
75037079	394	AKINbetagammaI [Arabidopsis thaliana]	0.960	0.936	0.678	1e-143
312281727	487	unnamed protein product [Thellungiella h	0.960	0.757	0.663	1e-140
224123752	475	predicted protein [Populus trichocarpa]	0.947	0.766	0.646	1e-133
356556126	491	PREDICTED: sucrose nonfermenting 4-like	0.963	0.753	0.606	1e-131
449450664	491	PREDICTED: sucrose nonfermenting 4-like	0.963	0.753	0.610	1e-130

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/376 (70%), Positives = 311/376 (82%), Gaps = 7/376 (1%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG  +GHENS + G++L+P RF+WP GGRRV LSGSFTRWSE +PMSP EGCP VFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +I  L PG+HQYKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G 
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGG 119

Query: 120 -NMEVD-DVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVK 177
            NM++D D   R E   + SEADL++SR R+S FLSTH  YELLP+SGKV ALDVNL VK
Sbjct: 120 SNMDLDNDPFPRGEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVK 179

Query: 178 QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW 237
           QAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAW
Sbjct: 180 QAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAW 239

Query: 238 KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC 297
           K GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS    GS 
Sbjct: 240 KEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSF 296

Query: 298 QEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPT 357
            ++L+LASLS ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE+NG+PFAMLRP 
Sbjct: 297 PQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPFAMLRPN 356

Query: 358 ASLGSALALLVQGDLT 373
           ASLG+AL+LLVQ +++
Sbjct: 357 ASLGAALSLLVQAEVS 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 264/383 (68%), Positives = 311/383 (81%), Gaps = 15/383 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG  +GHENS + G++L+P RF+WP GGRRV LSGSFTRWSE +PMSP EGCP VFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +I  L PG+HQYKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G 
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGG 119

Query: 120 -NMEVDDVVMRPEG--------FAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTAL 170
            NM++D+    P G          + SEADL++SR R+S FLSTH  YELLP+SGKV AL
Sbjct: 120 SNMDLDNDPF-PRGSSGTLQEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIAL 178

Query: 171 DVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE 230
           DVNL VKQAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELE
Sbjct: 179 DVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELE 238

Query: 231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS 290
           THTISAWK GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS
Sbjct: 239 THTISAWKEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHS 295

Query: 291 TGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRP 350
               GS  ++L+LASLS ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE+NG+P
Sbjct: 296 ASQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQP 355

Query: 351 FAMLRPTASLGSALALLVQGDLT 373
           FAMLRP ASLG+AL+LLVQ +++
Sbjct: 356 FAMLRPNASLGAALSLLVQAEVS 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542654|ref|XP_002512390.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223548351|gb|EEF49842.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/374 (68%), Positives = 312/374 (83%), Gaps = 9/374 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH ++GV+     P+RF+WP GGR V LSG+FT W++ +PMSP EGCP VFQ
Sbjct: 1   MFGSGQDTGHGSTGVL-----PLRFVWPYGGRSVFLSGTFTGWTDHIPMSPVEGCPTVFQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWR+DE+QP VSGNYGVVN V++   +P+MVP   + ET+G 
Sbjct: 56  VICSLTPGYHQYKFFVDGEWRYDEHQPSVSGNYGVVNTVFLPR-EPNMVPPIPNSETAGS 114

Query: 120 NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQA 179
           NME+D+V +RPE   + SEADL++SR R S+FLSTHT YELLP+SGKV ALDVNL VKQA
Sbjct: 115 NMELDEVFLRPEVSPRGSEADLEVSRHRFSAFLSTHTAYELLPESGKVIALDVNLPVKQA 174

Query: 180 FHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKV 239
           FHVLYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAWK 
Sbjct: 175 FHVLYEQGVPLAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKE 234

Query: 240 GKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE 299
           GKL LN  RQ+DG+GR  PR L+ AGPYDSLK+VALKILQN V+T+PIIHS+   GS  +
Sbjct: 235 GKLHLN--RQIDGDGRAYPRSLIHAGPYDSLKDVALKILQNNVSTIPIIHSSSRDGSFPQ 292

Query: 300 ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTAS 359
           +L+LASLS ILKCICRHF+HS+SSLP+LQQP+ SI LGTWVP+IGE+N RPFAMLRP AS
Sbjct: 293 LLHLASLSGILKCICRHFRHSASSLPVLQQPICSIPLGTWVPKIGESNVRPFAMLRPNAS 352

Query: 360 LGSALALLVQGDLT 373
           LG AL+LLVQ +++
Sbjct: 353 LGDALSLLVQAEVS 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390971|ref|NP_563834.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana] gi|75249553|sp|Q944A6.1|SNF4_ARATH RecName: Full=Sucrose nonfermenting 4-like protein; Short=SNF4; AltName: Full=CBS domain-containing protein CBSCBS3; AltName: Full=SNF1-related protein kinase regulatory subunit betagamma; Short=AKIN subunit betagamma; Short=AKINbetagamma gi|16612255|gb|AAL27498.1|AF439826_1 At1g09020/F7G19_11 [Arabidopsis thaliana] gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11 [Arabidopsis thaliana] gi|75037070|gb|ABA12450.1| AKINbetagamma [Arabidopsis thaliana] gi|332190262|gb|AEE28383.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/380 (67%), Positives = 302/380 (79%), Gaps = 11/380 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQGDLT 373
           LRP ASLGSALALLVQ +++
Sbjct: 357 LRPHASLGSALALLVQAEVS 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849192|ref|XP_002892477.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata] gi|297338319|gb|EFH68736.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 257/375 (68%), Positives = 301/375 (80%), Gaps = 9/375 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQ 178
            NM+VDDV +R    A  S  DL++SR RIS  LST T YELLP+SGKV ALDVNL VKQ
Sbjct: 119 SNMDVDDVFLRT---ADPSGVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQ 175

Query: 179 AFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWK 238
           AFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK
Sbjct: 176 AFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWK 235

Query: 239 VGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ 298
            GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  
Sbjct: 236 EGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYP 293

Query: 299 EILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA 358
           ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP A
Sbjct: 294 QLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHA 353

Query: 359 SLGSALALLVQGDLT 373
           SLGSALALLVQ +++
Sbjct: 354 SLGSALALLVQAEVS 368

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75037079|gb|ABA12451.1| AKINbetagammaI [Arabidopsis thaliana]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/380 (67%), Positives = 302/380 (79%), Gaps = 11/380 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQGDLT 373
           LRP ASLGSALALLVQ +++
Sbjct: 357 LRPHASLGSALALLVQAEVS 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281727|dbj|BAJ33729.1| unnamed protein product [Thellungiella halophila]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/380 (66%), Positives = 298/380 (78%), Gaps = 11/380 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GV+N ++I     DMVP    PET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVMNTIFIT--GQDMVPTGFIPETLGR 118

Query: 120 -NMEVDDVVMR-----PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VD V  R      E   + S  DL++SR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 ENMDVDGVFPRMTDSPQESIPRMSSVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQGDLT 373
           LRP ASLGSAL+LLVQ +++
Sbjct: 357 LRPHASLGSALSLLVQAEVS 376

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123752|ref|XP_002330199.1| predicted protein [Populus trichocarpa] gi|222871655|gb|EEF08786.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/373 (64%), Positives = 291/373 (78%), Gaps = 9/373 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH+NSGV+     PVRF+WP GG  VS+ G+FTRW + +PMSP EGCP VFQ
Sbjct: 1   MFGSGSSTGHDNSGVI-----PVRFVWPYGGGEVSIFGTFTRWIDLLPMSPVEGCPNVFQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGN 120
           I+  L PG HQ+KF VDG+WR DE    V G YGVVN V +    P  + N+ +P  S N
Sbjct: 56  IVVSLVPGLHQFKFRVDGQWRVDEQLSFVDGPYGVVNTV-VLTKDPPQILNSETPGRS-N 113

Query: 121 MEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAF 180
           ME+DDV + PE     S  +L++SR RIS+FLSTHT YELLP+SGKV ALDV L VKQAF
Sbjct: 114 MELDDVSVCPEVIQGISATELEVSRHRISAFLSTHTAYELLPESGKVIALDVTLPVKQAF 173

Query: 181 HVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVG 240
           H+LYEQG+PM PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTEEELETHTISAWK G
Sbjct: 174 HILYEQGIPMAPLWDFCKGQFVGVLTALDFILILRELGTHGSNLTEEELETHTISAWKEG 233

Query: 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI 300
           K+ LN  RQ+DG+GR   + L+ AGPYDS+K+V+LKILQN V+TVPIIHS    GS  ++
Sbjct: 234 KMHLN--RQIDGSGRAYSKHLIHAGPYDSMKDVSLKILQNSVSTVPIIHSASQDGSFPQL 291

Query: 301 LYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASL 360
           L+LASLS ILKCICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE N RPFAMLRP ASL
Sbjct: 292 LHLASLSGILKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGEPNRRPFAMLRPNASL 351

Query: 361 GSALALLVQGDLT 373
           G+AL+LL Q +++
Sbjct: 352 GAALSLLAQANVS 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556126|ref|XP_003546378.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/384 (60%), Positives = 293/384 (76%), Gaps = 14/384 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+   +++     GV G++L+P+RF+WP GGR V LSGSFTRW E +PMSP EGCP VFQ
Sbjct: 1   MFGQSMDSARNAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGN 120
           +I  LPPG+HQYKF+VDGEWRHDE+QP+V G+YG+VN V++A   P+ +P       SGN
Sbjct: 61  VIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGDYGIVNTVFLAT-DPNYIPVLPPDVASGN 119

Query: 121 -MEVDDVVMR----------PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTA 169
            M+VD+   R           E   + S+ D+Q+SR RIS+FLS+HT YELLP+SGKV A
Sbjct: 120 SMDVDNDAFRRMVRLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVA 179

Query: 170 LDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL 229
           LDV+L VKQAFH+L+EQG+ M PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEEL
Sbjct: 180 LDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEEL 239

Query: 230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIH 289
           ETHTISAWK GK  LN  RQ +G+G    R  + AGPYD+LK++A+KILQ +V+TVPIIH
Sbjct: 240 ETHTISAWKEGKSYLN--RQNNGHGTMFSRRFIHAGPYDNLKDIAMKILQKEVSTVPIIH 297

Query: 290 STGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGR 349
           S+    S  ++L+LASLS ILKCICR+F+H SSSLP+LQ P+ +I +GTWVP+IGE+N +
Sbjct: 298 SSSEDASFPQLLHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESNRQ 357

Query: 350 PFAMLRPTASLGSALALLVQGDLT 373
           P AMLRPTASL SAL LLVQ  ++
Sbjct: 358 PLAMLRPTASLASALNLLVQAQVS 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450664|ref|XP_004143082.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Cucumis sativus] gi|449523153|ref|XP_004168589.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Cucumis sativus]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/385 (61%), Positives = 288/385 (74%), Gaps = 15/385 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S ++T  + +   G++L+P+RF+WP GGR V LSGSFTRWSE +PM+P EGCP VFQ
Sbjct: 1   MFASSMDTVRDTARTAGTLLIPMRFVWPYGGRSVFLSGSFTRWSELVPMTPMEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETS-- 118
            I  L PG+HQYKF+VDGEWRHDE Q  VSG YGVVN V +A  +P       +PE +  
Sbjct: 61  AIYSLTPGYHQYKFFVDGEWRHDEQQTCVSGEYGVVNTVLLAT-EPSYAAPLANPEMTPG 119

Query: 119 GNMEVDDVVMR----------PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVT 168
            +M+VD+   R           E     SEADLQ SR RIS+FLSTHTVYELLP+SGKV 
Sbjct: 120 SSMDVDNEAFRRLVRINDGRLSEAVHSISEADLQCSRHRISAFLSTHTVYELLPESGKVV 179

Query: 169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE 228
           ALD++L VKQAFH+L+EQG+P  PLWD  KG+FVGVLSA DFILIL+ELG  GSNLTEEE
Sbjct: 180 ALDIDLPVKQAFHILHEQGIPTAPLWDFSKGQFVGVLSASDFILILKELGKRGSNLTEEE 239

Query: 229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPII 288
           LETHTISAWK GK  LN +  +DG GR   R  + A P+D+LK+VALKILQN+VATVPII
Sbjct: 240 LETHTISAWKEGKAYLNGR--VDGQGRFLSRQFIHAEPFDNLKDVALKILQNQVATVPII 297

Query: 289 HSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG 348
           HS+   GS  ++L+LASLS ILKCICR+F+H SS LP+LQ P+ +I +GTWVP+IGE+NG
Sbjct: 298 HSSAEDGSFPQLLHLASLSGILKCICRYFRHCSSLLPVLQLPIFAIPVGTWVPKIGESNG 357

Query: 349 RPFAMLRPTASLGSALALLVQGDLT 373
           RP AMLRP+ASL SAL LL+Q  ++
Sbjct: 358 RPLAMLRPSASLSSALNLLIQAQVS 382

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.960	0.757	0.681	9.8e-135
MGI|MGI:1336167	270	Prkab1 "protein kinase, AMP-ac	0.359	0.511	0.337	2.7e-15
RGD|71057	270	Prkab1 "protein kinase, AMP-ac	0.359	0.511	0.337	2.7e-15
UNIPROTKB|Q5BIS9	270	PRKAB1 "5'-AMP-activated prote	0.359	0.511	0.344	6.8e-15
UNIPROTKB|E2RH75	270	PRKAB1 "Uncharacterized protei	0.359	0.511	0.337	2.9e-14
UNIPROTKB|Q9Y478	270	PRKAB1 "5'-AMP-activated prote	0.361	0.514	0.346	2.9e-14
ZFIN|ZDB-GENE-030131-7172	260	prkab1b "protein kinase, AMP-a	0.361	0.534	0.344	4.1e-14
UNIPROTKB|F1SSN2	331	PRKAG2 "Uncharacterized protei	0.450	0.522	0.296	5.5e-14
UNIPROTKB|Q27IP4	273	PRKAB1 "Uncharacterized protei	0.359	0.505	0.344	7.4e-14
RGD|1308698	493	Prkag3 "protein kinase, AMP-ac	0.447	0.348	0.293	9.5e-14

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1320 (469.7 bits), Expect = 9.8e-135, P = 9.8e-135
 Identities = 259/380 (68%), Positives = 303/380 (79%)

Query:     1 MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
             M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct:     1 MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query:    61 IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
             +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct:    61 VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query:   120 -NMEVDDVVMR---P--EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
              NM+VDDV +R   P  E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct:   119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query:   174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
             L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct:   179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query:   234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
             I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct:   239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query:   294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
              GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct:   297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query:   354 LRPTASLGSALALLVQGDLT 373
             LRP ASLGSALALLVQ +++
Sbjct:   357 LRPHASLGSALALLVQAEVS 376

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

MGI|MGI:1336167 Prkab1 "protein kinase, AMP-activated, beta 1 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 2.7e-15, P = 2.7e-15
 Identities = 50/148 (33%), Positives = 77/148 (52%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 MSKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=ISO;TAS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

RGD|71057 Prkab1 "protein kinase, AMP-activated, beta 1 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 2.7e-15, P = 2.7e-15
 Identities = 50/148 (33%), Positives = 77/148 (52%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 ISKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IPI

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|Q5BIS9 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 6.8e-15, P = 6.8e-15
 Identities = 51/148 (34%), Positives = 76/148 (51%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN V I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPVVTSQLGTVNNV-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 ISKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|E2RH75 PRKAB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 50/148 (33%), Positives = 76/148 (51%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 VSKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9Y478 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 51/147 (34%), Positives = 74/147 (50%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEG-FAQYSEA 139
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G + Q    
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPGPYHQEPYV 193

Query:   140 DLQLSRDRISSFLSTHTVYELL-PDSG 165
                  R R    L  H +  +L  D+G
Sbjct:   194 CKPEERFRAPPILPPHLLQVILNKDTG 220

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

ZFIN|ZDB-GENE-030131-7172 prkab1b "protein kinase, AMP-activated, beta 1 non-catalytic subunit, b" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 4.1e-14, P = 4.1e-14
 Identities = 51/148 (34%), Positives = 73/148 (49%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W   G+ + LSGSF  W+  +P++ S      F  I  LP G HQYKFYVDG W 
Sbjct:    68 PTVFRWKGPGKEIYLSGSFNNWATKIPLNKSHNN---FVAIIDLPEGEHQYKFYVDGHWT 124

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
              D  +P V+   GVVN V I V + D  V + +  ++    ++ D+   P G   + +  
Sbjct:   125 LDPKEPVVTNKSGVVNNV-IKVRKTDFEVFDALKTDSEKCADMSDLSSSPPG-PYHQDPY 182

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
                S D++ S   L  H +  LL  D+G
Sbjct:   183 STKSEDKLRSPPILPPHLLQVLLNKDTG 210

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|F1SSN2 PRKAG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 202 (76.2 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 56/189 (29%), Positives = 92/189 (48%)

Query:   151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
             F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct:    23 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 82

Query:   211 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 270
             I IL         +   ELE H I  W+V   +L L+           +PLV   P  SL
Sbjct:    83 INILHRY-YKSPMVQIYELEEHKIETWRVNT-ELYLQETF--------KPLVNISPDASL 132

Query:   271 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330
              +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct:   133 FDAVHSLIKNKIHRLPVIDPV--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 186

Query:   331 VSSIQLGTW 339
             + ++ +GT+
Sbjct:   187 LDALGIGTY 195

GO:0043531 "ADP binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

UNIPROTKB|Q27IP4 PRKAB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 7.4e-14, P = 7.4e-14
 Identities = 51/148 (34%), Positives = 77/148 (52%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    82 PTVFRWTGGGKEVYLSGSFNNWSK-IPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 137

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN V I V + D  V + +  ++    ++ ++   P G   + E  
Sbjct:   138 HDPSEPVVTSQLGTVNNV-IQVKKTDFEVFDALMVDSQKCSDMSELSSSPPG-PYHQEPY 195

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +  + +R  S   L  H +  +L  D+G
Sbjct:   196 VCKAEERFKSPPILPPHLLQVILNKDTG 223

GO:0016301 "kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1308698 Prkag3 "protein kinase, AMP-activated, gamma 3 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 9.5e-14, P = 9.5e-14
 Identities = 56/191 (29%), Positives = 95/191 (49%)

Query:   151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
             F+  HT Y+ +  S K+   D  L +K+AF  +   G+   PLWD  K  FVG+L+  DF
Sbjct:   187 FMQEHTCYDAMATSSKLVIFDTTLEIKKAFFAMVANGVRAAPLWDSKKQSFVGMLTITDF 246

Query:   211 ILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDS 269
             IL+L       S L +  E+E H I  W+    ++ L+      G  C +PLV   P DS
Sbjct:   247 ILVLHRYYR--SPLVQIYEIEEHKIETWRGFSAEIYLQ------G--CFKPLVSISPNDS 296

Query:   270 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP-ILQ 328
             L E    +++N++  +P++     +G+   +LY+ +   +LK +  H   +    P  L 
Sbjct:   297 LFEAVYALIKNRIHRLPVLDPV--SGT---VLYILTHKRLLKFL--HIFGALLPRPSFLC 349

Query:   329 QPVSSIQLGTW 339
             + +  + +GT+
Sbjct:   350 RTIQDLGIGTF 360

GO:0005978 "glycogen biosynthetic process" evidence=IEA;ISO

GO:0015758 "glucose transport" evidence=IEA;ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A6	SNF4_ARATH	No assigned EC number	0.6789	0.9609	0.7577	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	2e-27
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	4e-21
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	3e-07
cd02688	82	cd02688, E_set, Early set domain associated with t	1e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	4e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	0.002

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score =  103 bits (259), Expect = 2e-27
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 22 PVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW 80
          PV F WP  GG+ V ++GSF  W +P+P+  S      F     LPPG ++YKF VDGEW
Sbjct: 1  PVTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDG--EFSATVELPPGRYEYKFIVDGEW 58

Query: 81 RHDENQPHVSGNYGVVN 97
           HD + P V+  +G +N
Sbjct: 59 VHDPDLPTVTDEFGNLN 75

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 86.5 bits (215), Expect = 4e-21
 Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 50/147 (34%)

Query: 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 224
            K+   D  L VK+AF+ L E G+   PLWD  K +FVG+L+  DFILILR         
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------- 51

Query: 225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 284
                                               LV   P  SL + AL +L+NK+  
Sbjct: 52  ------------------------------------LVSIHPERSLFDAALLLLKNKIHR 75

Query: 285 VPIIHSTGPAGSCQEILYLASLSDILK 311
           +P+I       S    LY+ +   ILK
Sbjct: 76  LPVIDP-----STGTGLYILTSRRILK 97

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 21 VPVRFIWPN--GGRRVSLSGSFTRWS-EPMPMSPS-EGCPAVFQIICRLPPG-HHQYKFY 75
            V F  P   G   VSL G F  W  +  PM     G    F     LP G  +Q+++ 
Sbjct: 1  CKVTFELPAEQGADSVSLVGDFNDWDPQATPMKKLKNG---TFSATLDLPAGREYQFRYL 57

Query: 76 VDGE-WRHDENQP-HVSGNYGVVNCV 99
          +DGE W +D     +    +G  N V
Sbjct: 58 IDGERWVNDPEADAYAPNGFGEENSV 83

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 22 PVRF-IWPNGGRRVSLSGSFTRWSE--PMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDG 78
           V F I+  G + V L GSF  W +   +PM+ + G   V+     LP G ++YK+ +DG
Sbjct: 1  GVTFRIFAPGAKSVYLIGSFNGWWQAQALPMTKNGG--GVWSATIPLPLGTYEYKYVIDG 58

Query: 79 EWRHDE 84
                
Sbjct: 59 GKNVLP 64

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 225
            V  +  +  V +A  ++ E G+  +P+ DD  GR VG+++  D +  L E G +     
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 226 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 285
            + +                             R +V   P  SL+E A  +L++ +  +
Sbjct: 61  GDVMT----------------------------RDVVTVSPDTSLEEAAELMLEHGIRRL 92

Query: 286 PIIHSTGPAGSCQEILYLASLSDILK 311
           P++   G       ++ + + SDIL+
Sbjct: 93  PVVDDEG------RLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 24/138 (17%)

Query: 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235
           V  AF ++ +  +  +P+ D+ KG+ +G +SA D    L+ L  +  +L    L   TI+
Sbjct: 12  VLDAFKLMRKNNISGLPVVDE-KGKLIGNISASD----LKGLLLSPDDL----LLYRTIT 62

Query: 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PA 294
                     L  +   +     RPL+   P  +LKEV  K++ NKV  V ++   G P 
Sbjct: 63  F-------KELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPI 115

Query: 295 GSCQEILYLASLSDILKC 312
           G       + +L+DI+  
Sbjct: 116 G-------VITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.94
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.91
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.89
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.76
COG2524	294	Predicted transcriptional regulator, contains C-te	99.75
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.67
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.66
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.59
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.58
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.53
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.51
COG3620	187	Predicted transcriptional regulator with C-termina	99.5
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.5
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.49
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.49
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.48
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.47
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.46
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.46
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.45
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.45
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.44
COG2905	610	Predicted signal-transduction protein containing c	99.43
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.42
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.42
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.42
COG2524	294	Predicted transcriptional regulator, contains C-te	99.41
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.41
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.41
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.4
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.39
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.39
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.39
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.39
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.38
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.38
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.37
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.37
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.36
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.36
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.36
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.36
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.35
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.35
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.35
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.34
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.34
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.34
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.34
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.34
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.34
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.34
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.33
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.33
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.33
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.32
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.32
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.32
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.31
COG0517	117	FOG: CBS domain [General function prediction only]	99.31
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.31
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.31
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.31
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.3
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.3
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.3
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.3
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.3
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.29
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.29
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.28
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.27
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.27
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.27
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.25
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.25
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.24
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.24
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.24
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.24
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.24
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.23
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.23
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.22
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.22
PRK11573	413	hypothetical protein; Provisional	99.22
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.22
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.19
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.19
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.19
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.19
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.16
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.16
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.15
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.13
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.13
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.08
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.07
COG4109	432	Predicted transcriptional regulator containing CBS	99.03
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.03
COG0517	117	FOG: CBS domain [General function prediction only]	99.02
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.0
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.98
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.95
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.95
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.93
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.93
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.92
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.91
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.91
COG3620	187	Predicted transcriptional regulator with C-termina	98.89
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.87
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.87
COG2905	610	Predicted signal-transduction protein containing c	98.87
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.87
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.86
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.85
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.85
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.85
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.84
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.84
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.83
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.83
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.83
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.83
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.82
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.82
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.82
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.81
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.81
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.8
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.8
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.8
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.79
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.79
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.79
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.79
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.79
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.77
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.76
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.76
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.76
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.75
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.74
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.74
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.74
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.74
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.74
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.74
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.74
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.73
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.72
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.71
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.71
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.7
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.68
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.67
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.67
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.66
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.65
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.63
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.6
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.6
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.6
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.6
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.59
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.59
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.59
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.56
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.55
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.54
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.53
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.51
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.49
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.47
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.45
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.44
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.42
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.41
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.39
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.39
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.39
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.38
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.37
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.34
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.33
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.29
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.27
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.23
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.19
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.01
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.98
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.75
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.73
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.73
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.71
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.66
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.66
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.57
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.49
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.4
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.39
COG4109	432	Predicted transcriptional regulator containing CBS	97.34
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.31
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.25
PRK12568	730	glycogen branching enzyme; Provisional	97.24
PLN02447	758	1,4-alpha-glucan-branching enzyme	97.24
PRK12313	633	glycogen branching enzyme; Provisional	97.21
PRK11573	413	hypothetical protein; Provisional	97.19
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.15
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.1
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.1
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	97.09
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.94
PRK14705	1224	glycogen branching enzyme; Provisional	96.94
PRK14706	639	glycogen branching enzyme; Provisional	96.93
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	96.87
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.85
PRK05402	726	glycogen branching enzyme; Provisional	96.84
COG1253	429	TlyC Hemolysins and related proteins containing CB	96.74
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.7
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.65
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	96.57
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.46
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.44
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.19
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.14
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	96.07
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.05
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	96.02
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	95.86
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	95.76
PRK05402	726	glycogen branching enzyme; Provisional	95.59
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	95.57
PLN02316	1036	synthase/transferase	95.42
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.36
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	94.96
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	94.93
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.51
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	94.0
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	93.92
PLN02950	909	4-alpha-glucanotransferase	92.64
PLN02950	909	4-alpha-glucanotransferase	92.34
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	92.0
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	91.81
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	90.48
PLN02316	1036	synthase/transferase	90.27
PLN02960	897	alpha-amylase	90.13
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	90.02
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	90.01
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	89.96
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	88.05
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	87.88
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	87.43
PRK03705	658	glycogen debranching enzyme; Provisional	85.79
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	84.2
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	81.73

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.94  E-value=6.3e-26  Score=209.99  Aligned_cols=166  Identities=17%  Similarity=0.311  Sum_probs=142.0

Q ss_pred             CccccccccccCCCCCCCHHHHH-----HHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeee
Q 016718          120 NMEVDDVVMRPEGFAQYSEADLQ-----LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW  194 (384)
Q Consensus       120 ~~dl~~~~~~~~~~~~~s~~~~e-----~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~  194 (384)
                      ..|+++++++++|..||+++|+|     +++++++|.++..+|.|+|  |+.|+++.+++++.+|.++|.+|+++++||.
T Consensus       205 ~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~  282 (382)
T COG3448         205 SEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVL  282 (382)
T ss_pred             HHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhc--CccceecCCcCChHHHHHHHHHcCccccccc
Confidence            68999999999999999999997     7899999999999999999  8899999999999999999999999999999


Q ss_pred             eCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHH
Q 016718          195 DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVA  274 (384)
Q Consensus       195 D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~  274 (384)
                      |+ ..+++||||++||+....   .  ++              ....+.+.    .++...+|+.++.|+.|+++..+++
T Consensus       283 d~-~~rl~GiVt~~dl~~~a~---~--~p--------------~qrlr~~~----~~~vk~imt~~v~tv~pdtpa~~lv  338 (382)
T COG3448         283 DE-HRRLVGIVTQRDLLKHAR---P--SP--------------FQRLRFLR----PPTVKGIMTTPVVTVRPDTPAVELV  338 (382)
T ss_pred             cc-ccceeeeeeHHHHhhccC---c--ch--------------HHHhhccC----CCcccccccCcceeecCCCcHHHHH
Confidence            96 689999999999964211   1  11              11111111    1112236999999999999999999


Q ss_pred             HHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhc
Q 016718          275 LKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF  317 (384)
Q Consensus       275 ~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~  317 (384)
                      .+|.+.+.|++||+|.   .|   +++|||||+|++.+++++.
T Consensus       339 p~lad~g~H~lpvld~---~g---~lvGIvsQtDliaal~r~~  375 (382)
T COG3448         339 PRLADEGLHALPVLDA---AG---KLVGIVSQTDLIAALYRNW  375 (382)
T ss_pred             HHhhcCCcceeeEEcC---CC---cEEEEeeHHHHHHHHHHHH
Confidence            9999999999999983   47   9999999999999999764

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.91  E-value=1.5e-24  Score=168.58  Aligned_cols=79  Identities=46%  Similarity=0.944  Sum_probs=73.8

Q ss_pred             eeEEEEEeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCeeeCCCCCeeeE
Q 016718           20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (384)
Q Consensus        20 ~~~v~f~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~~d~~G~~nNv   99 (384)
                      .++|+|+|++++++|+|+|||+||++.+||.+..  ++ |++++.||||.|+|||+|||+|.+|+++|++.|++|+.||+
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~   77 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV   77 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence            3799999999999999999999999878999864  34 99999999999999999999999999999999999999999


Q ss_pred             EE
Q 016718          100 YI  101 (384)
Q Consensus       100 i~  101 (384)
                      |+
T Consensus        78 i~   79 (79)
T cd02859          78 ID   79 (79)
T ss_pred             EC
Confidence            84

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.89  E-value=1.6e-22  Score=200.58  Aligned_cols=213  Identities=30%  Similarity=0.514  Sum_probs=176.1

Q ss_pred             HHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 016718          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (384)
Q Consensus       143 ~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~  222 (384)
                      .....+.+|+..++||+++|++.++++++..+++.+|+.+|..++++++||||....+++|++|..||+.++...+....
T Consensus        54 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~  133 (381)
T KOG1764|consen   54 NAVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS  133 (381)
T ss_pred             chhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC
Confidence            45668999999999999999999999999999999999999999999999999988999999999999999887765311


Q ss_pred             CC-ChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEE
Q 016718          223 NL-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL  301 (384)
Q Consensus       223 ~~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lv  301 (384)
                      .. ..+.++...+..+++.....+       .  ...++++++.|..++.+++..++++++||+||+|.  +.|   .++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~--~~~---~v~  199 (381)
T KOG1764|consen  134 SLDNIEVLEDSQLSKRREVECLLK-------E--TLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDP--ETG---EVL  199 (381)
T ss_pred             cHHHHhhhhhhhccccchhhhhhc-------c--ccCCCceeecCcHHHHHHHHHHHhCCccceeeecc--ccc---cee
Confidence            11 112222222222333211111       0  12455599999999999999999999999999983  446   899


Q ss_pred             EEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          302 YLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       302 Giit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                      +++|++.|++++..+.+.++ ..+++++++.++.+|+|.         .+.++.+++|+.+|+++|.++++|++||+-
T Consensus       200 ~ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~  267 (381)
T KOG1764|consen  200 YILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVD  267 (381)
T ss_pred             eehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEc
Confidence            99999999999998877665 367999999999999995         799999999999999999999999999973

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.76  E-value=2.9e-18  Score=134.27  Aligned_cols=77  Identities=38%  Similarity=0.748  Sum_probs=69.2

Q ss_pred             eEEEEEeeCC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEee-cCCCCCe-eeCCCCCee
Q 016718           21 VPVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR-HDENQPH-VSGNYGVVN   97 (384)
Q Consensus        21 ~~v~f~w~~~-~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~-~d~~~p~-~~d~~G~~n   97 (384)
                      ++++|+|.++ +++|+|+|+|++|+ ..+|++.+  +|.|++++.|++|.|+|||+|||.|. +||.++. ..|..|+.|
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~--~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n   78 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREG--DGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN   78 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEECC--CCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence            5799999885 59999999999998 47999864  69999999999999999999999998 9999986 668899999


Q ss_pred             eEE
Q 016718           98 CVY  100 (384)
Q Consensus        98 Nvi  100 (384)
                      |+|
T Consensus        79 ~v~   81 (82)
T cd02861          79 AVF   81 (82)
T ss_pred             eEc
Confidence            987

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.75  E-value=1.1e-17  Score=152.85  Aligned_cols=121  Identities=18%  Similarity=0.291  Sum_probs=105.5

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .++.++|  +.+++++++++||++|.++|++++|+++||+|.  ++++|++|.+|+..++.++...   .          
T Consensus       172 ~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~---~----------  234 (294)
T COG2524         172 EKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLD---A----------  234 (294)
T ss_pred             chhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCcc---c----------
Confidence            5688899  889999999999999999999999999999994  4999999999999888754211   0          


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                       .+.+                +|++.++++..|+.+.||+++|.++++.||.|+|+   +|   +.+||||.+|||+.++
T Consensus       235 -kV~~----------------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds---~g---kpvGiITrTDIL~~ia  291 (294)
T COG2524         235 -KVSD----------------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS---NG---KPVGIITRTDILTRIA  291 (294)
T ss_pred             -cHHH----------------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc---CC---cEEEEEehHHHHHHhh
Confidence             1122                47899999999999999999999999999999984   36   8999999999999987


Q ss_pred             h
Q 016718          315 R  315 (384)
Q Consensus       315 ~  315 (384)
                      .
T Consensus       292 ~  292 (294)
T COG2524         292 G  292 (294)
T ss_pred             c
Confidence            3

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=6.1e-16  Score=124.83  Aligned_cols=97  Identities=43%  Similarity=0.706  Sum_probs=85.4

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++++++|+.+|++.|.++++.++||+|+++++++|+||..|++++                                
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~--------------------------------   49 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI--------------------------------   49 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence            688999999999999999999999999999645799999999998521                                


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                 +.  ++++.|+++|.+|+++|.+++++++||+|+  ++|   +++|+||.+|++++
T Consensus        50 -----------~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~~   98 (98)
T cd04618          50 -----------LR--LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILKF   98 (98)
T ss_pred             -----------ee--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhcC
Confidence                       11  678999999999999999999999999984  226   89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.66  E-value=2.4e-16  Score=150.96  Aligned_cols=89  Identities=37%  Similarity=0.740  Sum_probs=81.6

Q ss_pred             CCceeEEEEEeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCeeeCCCCCe
Q 016718           17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVV   96 (384)
Q Consensus        17 ~~~~~~v~f~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~~d~~G~~   96 (384)
                      .....+++|+|..+++.|+|+|+|.||+..++|.+.....|.|++++.|++|.|+|||+|||+|.+|++.|++.|..|++
T Consensus        76 ~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~  155 (289)
T KOG1616|consen   76 REQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNL  155 (289)
T ss_pred             cccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCc
Confidence            34578999999999999999999999999999988765556699999999999999999999999999999999999999


Q ss_pred             eeEEEeccCC
Q 016718           97 NCVYIAVPQP  106 (384)
Q Consensus        97 nNvi~v~~~~  106 (384)
                      ||+++| .+.
T Consensus       156 ~N~i~v-~~~  164 (289)
T KOG1616|consen  156 NNILEV-QDP  164 (289)
T ss_pred             ccceEe-cCc
Confidence            999999 543

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=3.4e-14  Score=117.89  Aligned_cols=119  Identities=19%  Similarity=0.246  Sum_probs=92.0

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++++++++.+|++.|.++++..+||+|+ .++++|++|..|++.++....... ..  .        ...+.+... 
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~-~~--~--------~~~~~~~~~-   68 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNN-LD--L--------TVGEALERR-   68 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCcccc-cc--C--------CHHHHHhhc-
Confidence            4678999999999999999999999999995 789999999999987543211100 00  0        011111000 


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                               ..|..++.++.+++++.+|+++|.+++++++||+|+   +|   +++|+||++|++++
T Consensus        69 ---------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~~~Givt~~di~~~  120 (120)
T cd04641          69 ---------SQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE---NK---RVEGIISLSDILQF  120 (120)
T ss_pred             ---------ccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC---CC---CEEEEEEHHHhhcC
Confidence                     035678899999999999999999999999999983   36   89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.58  E-value=1.7e-14  Score=134.49  Aligned_cols=154  Identities=15%  Similarity=0.211  Sum_probs=113.7

Q ss_pred             CeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHH-HhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHH
Q 016718          199 GRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGK-LQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKI  277 (384)
Q Consensus       199 ~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~-~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m  277 (384)
                      ++-+| +|.+|+-.+|.++..- -.++.+|++.+--......+ ++.++..|    +.+|+++++++++++++.+|.++|
T Consensus       198 ~~rvg-fs~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~~~~Ltc----adIMSrdVvtv~~~ts~dhA~~ll  271 (382)
T COG3448         198 SQRVG-FSSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRRMGELTC----ADIMSRDVVTVSTDTSIDHARKLL  271 (382)
T ss_pred             hhccC-CCHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHHhccccH----HHhcCccceecCCcCChHHHHHHH
Confidence            46678 8999999999876543 24567888765322222222 22222222    347999999999999999999999


Q ss_pred             HhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCC
Q 016718          278 LQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPT  357 (384)
Q Consensus       278 ~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d  357 (384)
                      .+|+++.+||+|+   +.   +|+||+||+|+++..-..         .+ |++..+.    .++++.+|+.++.|+.+|
T Consensus       272 ~~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a~~~---------p~-qrlr~~~----~~~vk~imt~~v~tv~pd  331 (382)
T COG3448         272 QEHRIKALPVLDE---HR---RLVGIVTQRDLLKHARPS---------PF-QRLRFLR----PPTVKGIMTTPVVTVRPD  331 (382)
T ss_pred             HHcCccccccccc---cc---ceeeeeeHHHHhhccCcc---------hH-HHhhccC----CCcccccccCcceeecCC
Confidence            9999999999983   34   899999999998853211         11 1111111    124667889999999999


Q ss_pred             CCHHHHHHHHHhCCCceeeec
Q 016718          358 ASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       358 ~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +|..+++.++.+.+..++||+
T Consensus       332 tpa~~lvp~lad~g~H~lpvl  352 (382)
T COG3448         332 TPAVELVPRLADEGLHALPVL  352 (382)
T ss_pred             CcHHHHHHHhhcCCcceeeEE
Confidence            999999999999999999996

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.2e-13  Score=115.71  Aligned_cols=125  Identities=27%  Similarity=0.399  Sum_probs=92.2

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++++++++.+|++.|.++++..+||+|+ .++++|++|..|+++......... ..        ......+....+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~-~~--------~~~~~~~~~~~~~   71 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDLL-LY--------RTITFKELSEKFT   71 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchhh-cc--------cchhhhhhhhhcc
Confidence            5789999999999999999999999999996 589999999999987543111000 00        0000000000000


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                           . ....|..+++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+||+++
T Consensus        72 -----~-~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~~---~~~Giit~~dil~~  126 (126)
T cd04642          72 -----D-SDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE---EG---KPIGVITLTDIISI  126 (126)
T ss_pred             -----c-ccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC---CC---CEEEEEEHHHHhcC
Confidence                 0 00135778999999999999999999999999999983   36   89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.51  E-value=1.5e-13  Score=112.67  Aligned_cols=110  Identities=14%  Similarity=0.204  Sum_probs=88.8

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.+++++.+|++.|.+++...+||+|. .++++|+||..|+++...    .       +....+   +.+      
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~----~-------~~~~~~---v~~------   60 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGP----N-------DYETLK---VCE------   60 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcc----c-------cccccC---hhh------
Confidence            4678999999999999999999999999995 689999999999975311    0       000000   111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                +|..++.++.+++++.+|+.+|.+++.+++||+|+   +|   +++|+||.+|++++
T Consensus        61 ----------~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~---~~---~~~Giit~~di~~~  111 (111)
T cd04603          61 ----------VYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK---EG---KLVGTIYERELLRF  111 (111)
T ss_pred             ----------eeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---eEEEEEEhHHhhcC
Confidence                      35677889999999999999999999999999983   36   89999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.50  E-value=2.4e-13  Score=116.24  Aligned_cols=122  Identities=16%  Similarity=0.345  Sum_probs=98.4

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      ..+|..+|  ++.++.+.+++++.+|+++|.++|++-+||+++  +++||-||+.|+.+.+.+..        +++..++
T Consensus        64 ~ita~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~--------e~i~~~~  131 (187)
T COG3620          64 RITAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGM--------ESIRSLR  131 (187)
T ss_pred             eEeHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccc--------cchhhhh
Confidence            57899999  889999999999999999999999999999984  79999999999998775431        2222221


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      .   ++                +|..+|.+|+++.+|...-.+|-.|  ..+.|++    +|   +++||||..||++++
T Consensus       132 v---r~----------------vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e----~G---~~vGIITk~DI~k~~  183 (187)
T COG3620         132 V---RE----------------VMGEPFPTVSPDESLNVISQLLEEH--PAVLVVE----NG---KVVGIITKADIMKLL  183 (187)
T ss_pred             H---HH----------------HhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEe----CC---ceEEEEeHHHHHHHH
Confidence            1   22                4788999999999997666666544  5677776    36   899999999999998


Q ss_pred             Hh
Q 016718          314 CR  315 (384)
Q Consensus       314 ~~  315 (384)
                      ..
T Consensus       184 ~~  185 (187)
T COG3620         184 AG  185 (187)
T ss_pred             hc
Confidence            63

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=5.9e-13  Score=109.49  Aligned_cols=112  Identities=26%  Similarity=0.409  Sum_probs=90.7

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++.++.+++|+.+|++.|.+++...+||+|+ .++++|++|..|+++.+........        ..   ...+      
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~~~--------~~---~v~~------   63 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGPGC--------TA---PVEN------   63 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCCcc--------cC---CHHH------
Confidence            5778999999999999999999999999995 6899999999999875542110000        00   0111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|.++++++.+++++.+|+..|.+++.+++||+|+   +|   +++|+||.+|+++
T Consensus        64 ----------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~~Gvi~~~dl~~  113 (114)
T cd04619          64 ----------VMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NA---RPLGVLNARDALK  113 (114)
T ss_pred             ----------HhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEhHhhcc
Confidence                      24678899999999999999999999999999983   36   8999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.49  E-value=3e-13  Score=132.50  Aligned_cols=124  Identities=11%  Similarity=0.156  Sum_probs=99.6

Q ss_pred             hhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh
Q 016718          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (384)
Q Consensus       153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (384)
                      ...++.|+|.+..+++++.+++|+.+|++.|.++++..+||+|+ +|+++|+||.+|+.+++....    ..     ...
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~----~~-----~~~  269 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGI----DL-----RQA  269 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCC----Cc-----ccC
Confidence            45578999954347899999999999999999999988888885 689999999999876443110    00     000


Q ss_pred             hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                      +   ..+                +|+++++++.+++++.+|+.+|.+++++++||+|+    |   +++||||.+||+++
T Consensus       270 ~---v~~----------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~----~---~lvGiit~~dil~~  323 (326)
T PRK10892        270 S---IAD----------------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG----D---HLLGVLHMHDLLRA  323 (326)
T ss_pred             C---HHH----------------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC----C---EEEEEEEhHHhHhc
Confidence            0   111                36889999999999999999999999999999973    6   89999999999975

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.49  E-value=8.8e-13  Score=127.20  Aligned_cols=171  Identities=15%  Similarity=0.193  Sum_probs=125.3

Q ss_pred             HHHHHHh--hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 016718          145 RDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (384)
Q Consensus       145 ~~~~~~~--l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~  222 (384)
                      ...+...  |+..++.++|..-.++++++.++|+.++++.+.+++.+.+||++.+.++++|+|+..|++..+...  . .
T Consensus        55 ~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~--~-~  131 (292)
T PRK15094         55 RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD--A-E  131 (292)
T ss_pred             HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc--C-C
Confidence            3344444  467799999966558999999999999999999999999999986447999999999998644210  0 0


Q ss_pred             CCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEE
Q 016718          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (384)
Q Consensus       223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvG  302 (384)
                      ..           .+.+                +|+ +++++.+++++.+++..|.+++.|.+||+|.   .|   .++|
T Consensus       132 ~~-----------~l~~----------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~G---~viG  177 (292)
T PRK15094        132 AF-----------SMDK----------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSG  177 (292)
T ss_pred             cC-----------CHHH----------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---CC---CEEE
Confidence            00           0121                134 4558999999999999999999999999983   36   7999


Q ss_pred             EeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHH
Q 016718          303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  367 (384)
Q Consensus       303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m  367 (384)
                      |||..||++.+.........  ..-...+..+.-             ..+.+...+++.+..+.+
T Consensus       178 iVTleDIle~ivGei~de~d--~~~~~~i~~~~~-------------~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        178 LVTIEDILELIVGEIEDEYD--EEDDIDFRQLSR-------------HTWTVRALASIEDFNEAF  227 (292)
T ss_pred             EeEHHHHHHHHhCCCccccc--cccccccEEeCC-------------CeEEEEeccCHHHHHHHh
Confidence            99999999999875433211  000111222222             345788889998888876

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.48  E-value=1.1e-12  Score=132.29  Aligned_cols=168  Identities=16%  Similarity=0.223  Sum_probs=126.5

Q ss_pred             HHHHHHh--hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 016718          145 RDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (384)
Q Consensus       145 ~~~~~~~--l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~  222 (384)
                      .+-+...  |++.+|.|+|..-.++++++.++|+.++++.+.+++.+.+||++++.++++|||+..|++..+..     .
T Consensus       179 ~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-----~  253 (408)
T TIGR03520       179 QKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-----K  253 (408)
T ss_pred             HHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-----C
Confidence            3344444  46889999997767899999999999999999999999999998756799999999999754321     0


Q ss_pred             CCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEE
Q 016718          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (384)
Q Consensus       223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvG  302 (384)
                      ..        .   +.+.                | +++++|++++++.++++.|.+++.|.++|+|+   .|   .++|
T Consensus       254 ~~--------~---l~~~----------------~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~G---~~~G  299 (408)
T TIGR03520       254 NF--------D---WQSL----------------L-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---YG---GTSG  299 (408)
T ss_pred             CC--------C---HHHH----------------c-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---CC---CEEE
Confidence            00        0   1111                3 45789999999999999999999999999983   46   6999


Q ss_pred             EeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHH
Q 016718          303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  367 (384)
Q Consensus       303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m  367 (384)
                      |||.+||++.+.........   .-...+..+.             .....++..+++.++.+.|
T Consensus       300 iVT~eDileeivgei~de~d---~~~~~i~~~~-------------~~~~~v~G~~~l~~l~~~l  348 (408)
T TIGR03520       300 LVTLEDIIEEIVGDISDEFD---DEDLIYSKID-------------DNNYVFEGKTSLKDFYKIL  348 (408)
T ss_pred             EEEHHHHHHHHhCCCCCcCC---cCccceEEeC-------------CCeEEEEeccCHHHHHHHh
Confidence            99999999999765432110   0111222222             2345788889999988888

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.2e-12  Score=108.27  Aligned_cols=112  Identities=21%  Similarity=0.286  Sum_probs=89.2

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++++++++.+|++.|.++++..+||+|. .++++|+||..|+++.......         +...++   .+      
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~~---------~~~~~~---~~------   62 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGAD---------LQKVPV---GV------   62 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCCC---------ccCCCH---HH------
Confidence            4678999999999999999999999999995 6899999999999876532110         000011   11      


Q ss_pred             cccccCCCCCCCC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCC--CCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA--GSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~--g~~~~lvGiit~~dil~  311 (384)
                                +|.  .++.++.+++++.+|+++|.+++++++||+|+  ++  |   +++|+||++|+++
T Consensus        63 ----------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~--~~~~~---~l~Gvit~~~l~~  117 (118)
T cd04617          63 ----------IMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK--VDEGL---EVIGRITKTNITK  117 (118)
T ss_pred             ----------HhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC--CCccc---eEEEEEEhhheec
Confidence                      134  36889999999999999999999999999984  21  5   8999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=2e-12  Score=106.06  Aligned_cols=113  Identities=18%  Similarity=0.280  Sum_probs=90.5

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.+++++.+|++.|.++++..+||.|.+.++++|++|..|+++.+........        ..+   ..+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~--------~~~---v~~------   64 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPD--------RVN---VYE------   64 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCC--------ccC---HHH------
Confidence            467899999999999999999999999999522899999999999876543111100        000   111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                +|.+++.++.+++++.+|+.+|.+++.+.+||+|   + |   +++|+||..|++++
T Consensus        65 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~-~---~~~Gvi~~~dl~~~  114 (114)
T cd04630          65 ----------IMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE---N-N---ELIGIISLTDIFLA  114 (114)
T ss_pred             ----------HhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee---C-C---EEEEEEEHHHhhcC
Confidence                      2467889999999999999999999999999997   3 6   89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=9.8e-13  Score=105.41  Aligned_cols=95  Identities=23%  Similarity=0.395  Sum_probs=83.3

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      .++++.+++++.+|++.|.++++..+||+|+ .++++|++|..|+...                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~--------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAK--------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcC--------------------------------
Confidence            4678999999999999999999999999995 6899999999998420                                


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                   ..+.++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+|++++
T Consensus        49 -------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~---~~---~~~Giit~~di~~~   96 (96)
T cd04614          49 -------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING---ND---KLIGLLRDHDLLKP   96 (96)
T ss_pred             -------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC---CC---cEEEEEEHHHhhcC
Confidence                         11678999999999999999999999999983   36   89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.8e-12  Score=107.98  Aligned_cols=120  Identities=13%  Similarity=0.183  Sum_probs=89.8

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      .++++..++++.+|++.|.++++..+||+|++.++++|++|..|+++.+....... ..  .+.  .    .+... .  
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~-~~--~~~--~----~~~~~-~--   69 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSF-PG--LDP--L----YPIPL-R--   69 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhc-cc--hhh--h----hhhhh-h--
Confidence            35688999999999999999999999999963389999999999987654321110 00  000  0    00000 0  


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                             ....|..++.++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+|+-
T Consensus        70 -------~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~vGiit~~di~  121 (123)
T cd04627          70 -------DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN---QG---NLIGNISVTDVR  121 (123)
T ss_pred             -------hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC---CC---cEEEEEeHHHhh
Confidence                   00136788999999999999999999999999999984   36   899999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.45  E-value=1.1e-12  Score=128.20  Aligned_cols=123  Identities=17%  Similarity=0.247  Sum_probs=100.7

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      ..++.++|-++..++++.+++|+.+|++.|.+++...+||+|+ +++++|+||..|+.+.+.....    .     .   
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~----~-----~---  262 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGGA----L-----T---  262 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCCC----c-----C---
Confidence            6789999955434889999999999999999999999999995 6899999999999765532100    0     0   


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                       ....+                +|+++++++.+++++.+|+..|.++++.++||+|+   +|   +++|+||..|++++
T Consensus       263 -~~v~~----------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~lvGvIt~~di~~~  318 (321)
T PRK11543        263 -TPVNE----------------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE---NG---KLTGAINLQDFYQA  318 (321)
T ss_pred             -CcHHH----------------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHhc
Confidence             00112                36788999999999999999999999999999983   36   89999999999975

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.44  E-value=1.6e-12  Score=107.87  Aligned_cols=124  Identities=17%  Similarity=0.285  Sum_probs=92.4

Q ss_pred             CCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (384)
Q Consensus       164 s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (384)
                      +.+++++++++++.+|++.|.++++..+||+|. .++++|+|+..|++..+......      .......... .+.   
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~------~~~~~~~~~~-~~~---   69 (124)
T cd04600           1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGRR------PLRGRLRGRD-KPE---   69 (124)
T ss_pred             CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhcccccc------hhhhhhhccc-ccc---
Confidence            356789999999999999999999999999985 58999999999997654311100      0000000000 000   


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                              ....+|.+.++++.+++++.+|+++|.+++.+++||+|+   +|   +++|+||.+|++++
T Consensus        70 --------~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvit~~di~~~  124 (124)
T cd04600          70 --------TVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE---DR---RLVGIVTQTDLIAA  124 (124)
T ss_pred             --------cHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC---CC---CEEEEEEhHHhhcC
Confidence                    000136778999999999999999999999999999983   36   89999999999863

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.43  E-value=1.1e-12  Score=131.92  Aligned_cols=124  Identities=19%  Similarity=0.321  Sum_probs=103.6

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .++.+++  ..+.+++++.+|+.+|.+.|.++|++++.++|. ++...||||++|+...+..-++.   .          
T Consensus       149 trv~~~~--~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~---~----------  212 (610)
T COG2905         149 TRVGEVK--TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRS---K----------  212 (610)
T ss_pred             HHHHHHh--cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCC---c----------
Confidence            4678888  567889999999999999999999999999984 78999999999998766432221   0          


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                         ..            ...++|+.|+++|.+.+.+.||+.+|.+++|+|+||.+    +|   +++||||.+||++...
T Consensus       213 ---~~------------~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e----~g---q~~Gilt~~dIl~l~s  270 (610)
T COG2905         213 ---TQ------------KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE----DG---QPLGILTLTDILRLFS  270 (610)
T ss_pred             ---cc------------chhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec----CC---eeeEEeeHHHHHHhhC
Confidence               00            01125899999999999999999999999999999996    37   8999999999999876


Q ss_pred             hh
Q 016718          315 RH  316 (384)
Q Consensus       315 ~~  316 (384)
                      .+
T Consensus       271 ~~  272 (610)
T COG2905         271 QN  272 (610)
T ss_pred             CC
Confidence            43

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.42  E-value=1.8e-12  Score=132.33  Aligned_cols=169  Identities=15%  Similarity=0.213  Sum_probs=130.8

Q ss_pred             HHHHHHHhh--hhccccccCCCCCcEEEEecCccHHHHHHHHHH-----cCCCeeeeeeCCCCeEEEEeehHHHHHHHHH
Q 016718          144 SRDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (384)
Q Consensus       144 ~~~~~~~~l--~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~-----~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~  216 (384)
                      ++..++..+  ...++.++|  +.++++++.+.|+.+|++.|.+     +++..+||+|+ .++++|+|+.+|++..   
T Consensus       118 er~~i~~ll~~~e~tvg~iM--t~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a---  191 (449)
T TIGR00400       118 ERKAINLLLSYSDDSAGRIM--TIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILA---  191 (449)
T ss_pred             HHHHHHHHhCCCcchHHHhC--cCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcC---
Confidence            344455555  478999999  5689999999999999999986     67788999985 6899999999998631   


Q ss_pred             hccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCC
Q 016718          217 LGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS  296 (384)
Q Consensus       217 ~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~  296 (384)
                         ...    .        ...+                +|+++++++++++++.+|++.|.++++..+||+|+   +| 
T Consensus       192 ---~~~----~--------~v~~----------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~---~g-  236 (449)
T TIGR00400       192 ---KPE----E--------ILSS----------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN---EG-  236 (449)
T ss_pred             ---CCC----C--------cHHH----------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC---CC-
Confidence               100    0        0122                25677899999999999999999999999999983   46 


Q ss_pred             cccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceee
Q 016718          297 CQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQ  376 (384)
Q Consensus       297 ~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lP  376 (384)
                        +++|+||.+|+++.+.....+                  +++       +...++..+++.+.+++..|.++++..++
T Consensus       237 --~lvGiIt~~Dil~~l~~~~~e------------------d~~-------~~~gv~~~~~~~l~~~~~~~~~~R~~wL~  289 (449)
T TIGR00400       237 --RLVGIVTVDDIIDVIQSEATE------------------DFY-------MIAAVKPLDDSYFDTSILVMAKNRIIWLL  289 (449)
T ss_pred             --eEEEEEEHHHHHHHHHhhhHH------------------HHH-------HhcCCCCCcchhhhchHHHHHHhccchHH
Confidence              899999999999998764321                  111       11233444678889999999999999998


Q ss_pred             eccc
Q 016718          377 QPAI  380 (384)
Q Consensus       377 V~~~  380 (384)
                      |.++
T Consensus       290 v~~~  293 (449)
T TIGR00400       290 VLLV  293 (449)
T ss_pred             HHHH
Confidence            8754

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.42  E-value=5.5e-12  Score=128.96  Aligned_cols=126  Identities=16%  Similarity=0.182  Sum_probs=103.5

Q ss_pred             HHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChh
Q 016718          148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE  227 (384)
Q Consensus       148 ~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~  227 (384)
                      ..+.++..++.++|  ..+++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|+...    ...       
T Consensus        82 q~~~l~~VKv~~iM--i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~----~~~-------  147 (479)
T PRK07807         82 VAEVVAWVKSRDLV--FDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV----DRF-------  147 (479)
T ss_pred             HHHHHhhccccccc--ccCCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC----ccC-------
Confidence            34445567788998  567889999999999999999999999999995 6899999999998311    000       


Q ss_pred             hhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHH
Q 016718          228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS  307 (384)
Q Consensus       228 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~  307 (384)
                             ..+.+                +|+.+++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+
T Consensus       148 -------~~V~d----------------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~---~g---~lvGIIT~~  198 (479)
T PRK07807        148 -------TQVRD----------------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA---DG---RLVGVLTRT  198 (479)
T ss_pred             -------CCHHH----------------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC---CC---eEEEEEEHH
Confidence                   01122                36789999999999999999999999999999983   36   899999999


Q ss_pred             HHHHHHHhh
Q 016718          308 DILKCICRH  316 (384)
Q Consensus       308 dil~~l~~~  316 (384)
                      ||++.....
T Consensus       199 DIl~~~~~~  207 (479)
T PRK07807        199 GALRATIYT  207 (479)
T ss_pred             HHHHHhhCC
Confidence            999987643

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.42  E-value=4.3e-12  Score=103.81  Aligned_cols=110  Identities=20%  Similarity=0.272  Sum_probs=88.8

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +.++++.++++.+|++.|.+++...+||.|+ +++++|++|..|+++.+......         ..    ...+      
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~~---------~~----~v~~------   62 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLSL---------DD----PVSE------   62 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCCc---------CC----CHHH------
Confidence            4568899999999999999999999999985 68999999999997654321100         00    0112      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|..++.++.+++++.+|+.+|.+++.+++||+|+   +|   +++|+||.+||+.
T Consensus        63 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~  112 (113)
T cd04607          63 ----------VMNRNPITAKVGSSREEILALMRERSIRHLPILDE---EG---RVVGLATLDDLLS  112 (113)
T ss_pred             ----------hhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC---CC---CEEEEEEhHHhcc
Confidence                      24667889999999999999999999999999983   36   8999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.41  E-value=6.7e-13  Score=121.78  Aligned_cols=96  Identities=18%  Similarity=0.329  Sum_probs=83.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      .|+++++++.|++||.+|+++|.+++++..||+|+    +   +++|++|.+||.+++++.  .       ++       
T Consensus       177 ~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g--~-------~~-------  233 (294)
T COG2524         177 LMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG--N-------LD-------  233 (294)
T ss_pred             hccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC--C-------cc-------
Confidence            58999999999999999999999999999999983    4   799999999999999863  1       11       


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                           .+|.+.|+++++|+..|+.++||+++|..+++++|-|+-
T Consensus       234 -----~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d  272 (294)
T COG2524         234 -----AKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD  272 (294)
T ss_pred             -----ccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence                 133445679999999999999999999999999998863

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=6.2e-12  Score=102.23  Aligned_cols=112  Identities=21%  Similarity=0.376  Sum_probs=90.4

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++++++++.++.+|.+.|.+++...+||.|+ .++++|+++..|+++.+........        ..+   ..+      
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~--------~~~---~~~------   63 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGASAL--------DTP---VSE------   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCCCcc--------ccC---HHH------
Confidence            4678899999999999999999999999995 5899999999999876543211000        000   111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                +|..++.++.+++++.++++.|.+++.+++||++   + |   +++|+||.+|++++
T Consensus        64 ----------~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~~  113 (113)
T cd04623          64 ----------IMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD---G-G---KLVGIVSIGDVVKA  113 (113)
T ss_pred             ----------hcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe---C-C---EEEEEEEHHHhhcC
Confidence                      2567889999999999999999999999999997   2 6   89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.41  E-value=1.6e-12  Score=109.18  Aligned_cols=113  Identities=12%  Similarity=0.176  Sum_probs=89.6

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.++.++.+|++.|.++++..+||+|+ +++++|++|..|++..+....... ..           ...+      
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~~~-~~-----------~v~~------   63 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKVQP-SD-----------PVSK------   63 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhccCC-CC-----------cHHH------
Confidence            4678999999999999999999999999995 689999999999987654321110 00           1122      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHH---------hcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL---------QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~---------~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                                +|++++.++.+++++.+++++|.         +.+.+++||+|+   +|   +++||||.+|+++++
T Consensus        64 ----------im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~Givt~~Dl~~~~  124 (124)
T cd04608          64 ----------ALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK---QE---KPIGIVTKIDLLSYI  124 (124)
T ss_pred             ----------HhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc---cc---ceEEEEehhHhhhhC
Confidence                      36788999999999999999653         346888999973   36   899999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.40  E-value=6.3e-12  Score=103.15  Aligned_cols=113  Identities=19%  Similarity=0.302  Sum_probs=89.8

Q ss_pred             EEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhcc
Q 016718          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL  246 (384)
Q Consensus       167 vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~  246 (384)
                      +.++++++++.+|.+.|.+++...+||.|+ .++++|+++..|+...+...... ..           ..+.+       
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~-~~-----------~~~~~-------   62 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAG-EP-----------SAVDE-------   62 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhccccc-cc-----------ccHHH-------
Confidence            457899999999999999999999999995 68999999999998755321100 00           00111       


Q ss_pred             ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       247 ~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                               +|..++.++.+++++.+|+.+|.+++.+++||+|+ .+.|   +++|+||.+||+++
T Consensus        63 ---------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~---~~~Gvit~~di~~~  115 (115)
T cd04593          63 ---------VATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPG---QVLGLLTRENVLLA  115 (115)
T ss_pred             ---------hccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCC---eEEEEEEhHHhhcC
Confidence                     24677899999999999999999999999999984 1125   79999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.39  E-value=4.3e-12  Score=133.45  Aligned_cols=132  Identities=17%  Similarity=0.187  Sum_probs=106.2

Q ss_pred             HHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhh
Q 016718          149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE  228 (384)
Q Consensus       149 ~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~  228 (384)
                      ++.++..++.|+|  +.+.+++++++++.+|.+.|.+++...+||+|+ +++++|+||..|+.+.+......        
T Consensus       441 ~~~L~~~~V~dim--~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~~--------  509 (574)
T PRK01862        441 RERLRTTQMRELI--QPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRDT--------  509 (574)
T ss_pred             hhHHhhCcHHHHh--cCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhccccc--------
Confidence            4567888999999  556778999999999999999999999999995 68999999999998654321100        


Q ss_pred             hhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHH
Q 016718          229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD  308 (384)
Q Consensus       229 l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~d  308 (384)
                       ...   ...+                +|.++++++++++++.+|+++|.+++++++||+|+ ++.+   +++|+||++|
T Consensus       510 -~~~---~v~d----------------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~-~~~~---~liGvIt~~D  565 (574)
T PRK01862        510 -TDK---TAAD----------------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVES-EASP---TLAGVVYKTS  565 (574)
T ss_pred             -ccc---hHHH----------------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC-CCCC---eEEEEEEHHH
Confidence             000   0111                35778899999999999999999999999999984 1224   7999999999


Q ss_pred             HHHHHHh
Q 016718          309 ILKCICR  315 (384)
Q Consensus       309 il~~l~~  315 (384)
                      +++++.+
T Consensus       566 Il~~l~~  572 (574)
T PRK01862        566 LLDAYRR  572 (574)
T ss_pred             HHHHHHh
Confidence            9999865

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.39  E-value=1.3e-11  Score=100.23  Aligned_cols=108  Identities=19%  Similarity=0.385  Sum_probs=89.7

Q ss_pred             CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      .+++++.++.++.+|++.|.+++...+||.|+ .++++|++|..|+++.+....   .             .+.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~---~-------------~~~~-----   59 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDK---K-------------SVED-----   59 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCc---c-------------CHHH-----
Confidence            46778999999999999999999999999985 689999999999976543210   0             0111     


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                 .|.+++.++.+++++.+|++.|.+++.+.+||++.   +|   +++|+||..|+++
T Consensus        60 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~v~~~di~~  109 (110)
T cd04605          60 -----------IMTRNVITATPDEPIDVAARKMERHNISALPVVDA---EN---RVIGIITSEDISK  109 (110)
T ss_pred             -----------hcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC---CC---cEEEEEEHHHhhh
Confidence                       24567889999999999999999999999999983   36   8999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.39  E-value=3.8e-12  Score=107.87  Aligned_cols=132  Identities=20%  Similarity=0.293  Sum_probs=92.1

Q ss_pred             CCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH--HHH-HHH
Q 016718          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI--SAW-KVG  240 (384)
Q Consensus       164 s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i--~~~-~~~  240 (384)
                      |.+++++++++++.+|++.|.++++..+||+|+ .++++|+++..|+++.+......  ..  .+......  ... ...
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~   75 (135)
T cd04586           1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTER--RR--ARWLDLLAGAEELAAAF   75 (135)
T ss_pred             CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcc--hh--hhHHHHhcchHHHHHHH
Confidence            356789999999999999999999999999995 68999999999998654321100  00  00000000  000 000


Q ss_pred             HHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       241 ~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                      ... .  .  .....+|..++.++.+++++.+|+..|.+++.+++||+|    .|   +++|+||..|++++
T Consensus        76 ~~~-~--~--~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd----~g---~~~Gvit~~di~~~  135 (135)
T cd04586          76 VRS-H--G--RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR----GG---RLVGIVSRADLLRA  135 (135)
T ss_pred             HHh-c--C--CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec----CC---EEEEEEEhHhhhcC
Confidence            000 0  0  000013567889999999999999999999999999997    26   89999999999863

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=8.7e-12  Score=104.42  Aligned_cols=126  Identities=20%  Similarity=0.343  Sum_probs=91.1

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhc-cCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG-TNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~-~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      +++++.+++++.+|+++|.++++..+||+|+ .++++|++|..|+.+.+.... .+.............-....      
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   74 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVY------   74 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHH------
Confidence            4568899999999999999999999999995 589999999999987653211 00000000000000000001      


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                .+|..+++++.+++++.+|+..|.+.+.+.+||++.+ ++|   +++|+||.+|++++
T Consensus        75 ----------~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-~~~---~~~Gvit~~di~~~  128 (128)
T cd04632          75 ----------DAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD-DDT---KVVGILTKKDVLRA  128 (128)
T ss_pred             ----------HHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC-CCC---cEEEEEEhHhhhcC
Confidence                      1367889999999999999999999999999999521 236   89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=7.1e-12  Score=106.85  Aligned_cols=130  Identities=16%  Similarity=0.277  Sum_probs=90.8

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++..++++.+|++.|.+++...+||+|+ .++++|++|..|+++.+......  .....   .+.+   .+......
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~--~~~~~---~~~~---~~~~~~~~   72 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNER--GLPKK---SIKM---KRKAGQKR   72 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhccccc--ccchh---hhhh---hhhccccc
Confidence            3568899999999999999999999999995 68999999999998765321100  00000   0000   00000000


Q ss_pred             cc--cccC-CCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LK--RQMD-GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~--~~~~-~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                      .+  .... ....+|..++.++.+++++.+|+..|.+++.+++||++   + |   +++|+||++|+++
T Consensus        73 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~---~-~---~~~Gvit~~di~~  134 (135)
T cd04621          73 YRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD---N-D---NIVGVITKTDICR  134 (135)
T ss_pred             ccccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe---C-C---EEEEEEEHHHHhh
Confidence            00  0000 00114677889999999999999999999999999997   2 6   8999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.38  E-value=1.3e-11  Score=100.32  Aligned_cols=109  Identities=19%  Similarity=0.311  Sum_probs=88.3

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.+++++.+|++.|.++++..+||+|.+.++++|++|..|+++.+.... .      .    .   .+..      
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~-~------~----~---~~~~------   61 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE-E------D----L---DLRD------   61 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC-C------c----C---CHHH------
Confidence            57899999999999999999999999999953289999999999987653210 0      0    0   0111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +| +++.++.+++++.+|++.|.+++.+++||+|+   +|   +++|+||.+|+++
T Consensus        62 ----------~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~  110 (111)
T cd04590          62 ----------LL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YG---GTAGLVTLEDILE  110 (111)
T ss_pred             ----------Hh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CC---CEEEEeEHHHhhc
Confidence                      12 46789999999999999999999999999983   36   8999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=8.8e-12  Score=101.38  Aligned_cols=109  Identities=22%  Similarity=0.327  Sum_probs=89.2

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +.+++++++++.+|.+.|.+.+...+||+|. .++++|+++..|+++.+......              ..+.+      
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~--------------~~v~~------   60 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGPD--------------APVRG------   60 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCCC--------------CcHHH------
Confidence            4567899999999999999999999999995 68999999999998765421110              01122      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|..++.++.+++++.+|++.|.+++.+++||+|+   +|   +++|++|.+|+.+
T Consensus        61 ----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~  110 (111)
T cd04639          61 ----------VMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG---SG---RLVGLVTLENVGE  110 (111)
T ss_pred             ----------HhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC---CC---CEEEEEEHHHhhc
Confidence                      24567889999999999999999999999999973   36   8999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.1e-11  Score=101.53  Aligned_cols=115  Identities=19%  Similarity=0.308  Sum_probs=87.6

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++++++.++++.+|++.|.++++..+||+|+ .++++|+++..|+++.+.....       .++....-....+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~-------~~~~~~~~~~v~~------   67 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLEN-------LDLERLVDLKVID------   67 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCc-------hhHHHHhCCcHHH------
Confidence            5789999999999999999999999999995 6899999999999865532110       0100000000111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                +|..++.++.+++++.+|+.+|.+++  .+||+|+   +|   +++|+||..|++++
T Consensus        68 ----------~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~---~~---~~~Gvit~~dil~~  116 (116)
T cd04643          68 ----------VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD---DG---IFIGIITRREILKA  116 (116)
T ss_pred             ----------HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC---CC---eEEEEEEHHHhhcC
Confidence                      35678899999999999999998865  5999983   36   89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.1e-11  Score=101.28  Aligned_cols=113  Identities=22%  Similarity=0.334  Sum_probs=89.4

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++++++++.+|.+.|.++++..+||+|+ .++++|+|+..|+++.+.........       ..   ...+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~-------~~---~v~~------   64 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYHCDG-------VA---TVRD------   64 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhccCC-------Cc---cHHH------
Confidence            4678999999999999999999999999985 68999999999998755321100000       00   0111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                +|..++.++.+++++.+|+..|.+++.+++||+|   + |   +++|+||..|++++
T Consensus        65 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~~  114 (114)
T cd04629          65 ----------IMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD---D-G---KLVGQISRRDVLRA  114 (114)
T ss_pred             ----------HhccCceEECCCCcHHHHHHHHHHhCCCccCEEE---C-C---EEEEEEEHHHHhcC
Confidence                      2456788999999999999999999999999998   2 6   89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.3e-11  Score=100.42  Aligned_cols=109  Identities=13%  Similarity=0.222  Sum_probs=88.3

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++.+++.++++.+|++.|.++++..+||+|+ .++++|+++..|++.......    ..      ..   ...+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~----~~------~~---~v~~------   61 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFES----FL------EK---KVFN------   61 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcc----cc------cC---cHHH------
Confidence            4678999999999999999999999999985 689999999999976432110    00      00   0111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                .|.+++.++.+++++.+|+..|.+++.+++||+|   + |   +++|+||..|+++
T Consensus        62 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~di~~  110 (111)
T cd04626          62 ----------IVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD---D-N---KLIGVVRTKDILD  110 (111)
T ss_pred             ----------HhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEhHHhcc
Confidence                      2467889999999999999999999999999997   3 6   8999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.36  E-value=8e-12  Score=102.39  Aligned_cols=109  Identities=17%  Similarity=0.254  Sum_probs=85.7

Q ss_pred             cEEEEecCccHHHHHHHHHHcC-CCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~-i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      ++.++.+++++.+|++.|.+++ ...+||+|. .++++|++|..|++......... .             .+.+.    
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~-~-------------~v~~~----   62 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWAQ-T-------------TVIQV----   62 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhccc-c-------------chhhh----
Confidence            4568899999999999998775 899999995 68999999999997654311100 0             01122    


Q ss_pred             ccccccCCCCCCCC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          245 NLKRQMDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       245 ~~~~~~~~~~~~m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                  |.  .++.++.+++++.+|++.|.+++.+++||+|+   +|   +++|+||..||++
T Consensus        63 ------------~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~---~~~Gvl~~~di~~  113 (114)
T cd04801          63 ------------MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SG---QVIGLITEADLLR  113 (114)
T ss_pred             ------------hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CC---cEEEEEeccceec
Confidence                        22  34668999999999999999999999999983   36   8999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.36  E-value=2.1e-11  Score=99.31  Aligned_cols=110  Identities=17%  Similarity=0.267  Sum_probs=88.6

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +.+++..+.++.+|.+.|.+++...+||.|+  ++++|+++..|++..+......  .   +       ....+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~--~---~-------~~i~~------   61 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLP--S---S-------TPVGE------   61 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCC--C---C-------CCHHH------
Confidence            4568899999999999999999999999984  7899999999998654321000  0   0       00111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                +|..++.++.+++++.+++++|.+++.+.+||+|+    |   +++|+||..|+++|
T Consensus        62 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~G~it~~dl~~~  111 (111)
T cd04589          62 ----------IATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG----G---EVVGVLEQTDLLSF  111 (111)
T ss_pred             ----------HhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC----C---EEEEEEEhHHhhcC
Confidence                      24678899999999999999999999999999972    6   89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.35  E-value=1e-11  Score=100.11  Aligned_cols=104  Identities=12%  Similarity=0.137  Sum_probs=86.3

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++++++++.++.+|++.|.+++...+||.|+ .|+++|++|..|+++...      ..             ..+      
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~------~~-------------~~~------   55 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG------GC-------------CGD------   55 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc------cc-------------hhh------
Confidence            4568899999999999999999999999985 689999999999974310      00             011      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                .|......+.+++++.+|+++|.++++..+||+|+   +|   +++|+||.+++++
T Consensus        56 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~~l~~  105 (106)
T cd04582          56 ----------HAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DG---RYVGEVTQRSIAD  105 (106)
T ss_pred             ----------hcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence                      24566778999999999999999999999999983   36   8999999999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.4e-11  Score=103.98  Aligned_cols=131  Identities=16%  Similarity=0.233  Sum_probs=91.8

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.+++++.+|++.|.+++...+||+|+ .++++|+++..|++..+...............   .... .+....+.
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~   76 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSV---IFLD-ESKIKKLL   76 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccc---cccc-hHHHHHHc
Confidence            3568899999999999999999999999995 68999999999998766432111000000000   0000 00000000


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                      ...    ...+|.+++..+.+++++.+++.+|.+++.+++||+|   + |   +++|++|..|+++|
T Consensus        77 ~~~----v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~iGvit~~dl~~~  132 (132)
T cd04636          77 GKK----VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD---D-G---KLVGIISRGDIIRS  132 (132)
T ss_pred             CCC----HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE---C-C---EEEEEEEHHHhhcC
Confidence            000    0113567889999999999999999999999999998   3 6   89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.8e-11  Score=101.34  Aligned_cols=120  Identities=18%  Similarity=0.323  Sum_probs=90.9

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCCh-hhhhhhhHHHHHHHHHhh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQL  244 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~-~~l~~~~i~~~~~~~~~~  244 (384)
                      +++++++++++.+|++.|.++++..+||+|. .++++|++|..|++..+...... ...+. .......+   .+     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v---~~-----   71 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSD-NGEESLTKERDVPV---AE-----   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhcccccc-ccccccccccCcCH---HH-----
Confidence            4678999999999999999999999999985 58999999999998755321111 00000 00000001   11     


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                 +|..+++++.+++++.+++++|.+++.+.+||+|+   +|   +++|++|..|++++
T Consensus        72 -----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dl~~~  122 (122)
T cd04803          72 -----------VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KG---TLVGIITRSDFLRL  122 (122)
T ss_pred             -----------hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CC---CEEEEEEHHHhhcC
Confidence                       25678899999999999999999999999999983   36   89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.34  E-value=4.5e-11  Score=122.20  Aligned_cols=124  Identities=11%  Similarity=0.122  Sum_probs=100.8

Q ss_pred             HHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhh
Q 016718          149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE  228 (384)
Q Consensus       149 ~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~  228 (384)
                      .+.++..+.+++|  ..+++++.+++++.+|+++|.++++..+||+|.  ++++|+||.+|+...     ..   .    
T Consensus        82 ae~v~~VKv~eim--~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~-----~~---~----  145 (475)
T TIGR01303        82 KQTVAFVKSRDLV--LDTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV-----DR---F----  145 (475)
T ss_pred             HHHHhhcchhhcc--ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC-----CC---C----
Confidence            3344567788888  557789999999999999999999999999984  689999999998311     00   0    


Q ss_pred             hhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHH
Q 016718          229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD  308 (384)
Q Consensus       229 l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~d  308 (384)
                            ..+.+                +|+.+++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|
T Consensus       146 ------~~V~d----------------IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~---~g---~LvGIIT~~D  197 (475)
T TIGR01303       146 ------TQVRD----------------IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA---DG---TLAGILTRTG  197 (475)
T ss_pred             ------CCHHH----------------HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHH
Confidence                  01122                36789999999999999999999999999999983   36   8999999999


Q ss_pred             HHHHHHhh
Q 016718          309 ILKCICRH  316 (384)
Q Consensus       309 il~~l~~~  316 (384)
                      |++.....
T Consensus       198 Ll~~~~~~  205 (475)
T TIGR01303       198 ALRATIYT  205 (475)
T ss_pred             HHHHHhCC
Confidence            99987643

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.34  E-value=2.9e-11  Score=98.24  Aligned_cols=108  Identities=22%  Similarity=0.367  Sum_probs=88.3

Q ss_pred             CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      +++++++.+.++.+|.+.|.+++...+||.|.  ++++|+|+..|++..+.... .  ..           ...+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~-~--~~-----------~~~~-----   60 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL-G--HA-----------PVKD-----   60 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc-c--cC-----------cHHH-----
Confidence            35778999999999999999999999999994  89999999999976542110 0  00           0112     


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                 +|..+++++.+++++.+|+.+|.+++.+.+||+|    +|   +++|+||..|+++
T Consensus        61 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~---~~~Gvvt~~di~~  109 (110)
T cd04595          61 -----------YMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE----DG---RLVGIVTRTDLLR  109 (110)
T ss_pred             -----------HhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe----CC---EEEEEEEhHHhhc
Confidence                       2466788999999999999999999999999997    26   8999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.7e-11  Score=101.90  Aligned_cols=122  Identities=20%  Similarity=0.362  Sum_probs=90.9

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC-CCC-hhhhhhhhHHHHHHHHHh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS-NLT-EEELETHTISAWKVGKLQ  243 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~-~~~-~~~l~~~~i~~~~~~~~~  243 (384)
                      +++++.++.++.+|.+.|.+++...+||+|.+.++++|+|+..|++..+........ ... ..+....   ...+    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----   74 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINE---PVRS----   74 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhc---CHHH----
Confidence            467889999999999999999999999999633899999999999876542110000 000 0000000   0011    


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                  +|..+++++.+++++.+++..|.+++.+.+||+|+   +|   +++|+||..||+++
T Consensus        75 ------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~---~~~Gvit~~di~~~  125 (125)
T cd04631          75 ------------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DG---KLVGIVTERDLLKA  125 (125)
T ss_pred             ------------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---cEEEEEEHHHhhcC
Confidence                        24677899999999999999999999999999973   36   89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.34  E-value=8.4e-11  Score=121.20  Aligned_cols=116  Identities=16%  Similarity=0.251  Sum_probs=96.1

Q ss_pred             ccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHH
Q 016718          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  236 (384)
Q Consensus       157 ~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~  236 (384)
                      +.++|  ..++++++++.++.+|.++|.++++..+||+|+ .++++|+||.+|+....    ..  ..           .
T Consensus        89 ~~dim--~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~----~~--~~-----------~  148 (486)
T PRK05567         89 SESGV--VTDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFET----DL--SQ-----------P  148 (486)
T ss_pred             hhhcc--cCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhcc----cC--CC-----------c
Confidence            55677  568899999999999999999999999999995 78999999999985311    00  00           1


Q ss_pred             HHHHHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          237 WKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~m~-~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                      ..+                +|. ++++++.+++++.+|+.+|.+++++.+||+|.   +|   +++|+||.+||++.+.
T Consensus       149 V~d----------------im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---~g---~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        149 VSE----------------VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---NG---RLKGLITVKDIEKAEE  205 (486)
T ss_pred             HHH----------------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEhHHhhhhhh
Confidence            122                245 78999999999999999999999999999983   46   8999999999999874

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.34  E-value=1.5e-11  Score=100.06  Aligned_cols=112  Identities=24%  Similarity=0.339  Sum_probs=89.5

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.+++++.+|.++|.++++..+||+|. .++++|+++..|+.+.+....         ..+..++   .+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~---------~~~~~~v---~~------   62 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPS---------LYDLVVA---SD------   62 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhccc---------ccccEEH---HH------
Confidence            4678999999999999999999999999995 589999999999976543110         0000011   11      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|.+++.++.+++++.+++..|.+.+.+++||+|+  +.|   +++|++|..|+++
T Consensus        63 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--~~~---~~~Gvvt~~di~~  113 (114)
T cd04613          63 ----------IMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD--DPG---KLLGILSRSDLLS  113 (114)
T ss_pred             ----------hccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC--CCC---EEEEEEEhHHhhc
Confidence                      25677899999999999999999999999999972  135   8999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=4.2e-11  Score=99.14  Aligned_cols=121  Identities=17%  Similarity=0.355  Sum_probs=91.5

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.++.++.+|.+.|.++++..+||+|+  ++++|++|..|+.+.+....... .....++.     .+......  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~--   71 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTA-GETEKDLA-----TLNRRAHQ--   71 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccc-cchHHHHH-----HHHhHHHH--
Confidence            4678999999999999999999999999994  89999999999987654322110 00000100     00000111  


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                +|..+++++.+++++.+++..|.+++...+||+|+   +|   +++|++|..|++++
T Consensus        72 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvit~~dll~~  122 (122)
T cd04637          72 ----------IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NG---QLIGIITWKDLLKY  122 (122)
T ss_pred             ----------hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CC---CEEEEEEHHHhhhC
Confidence                      25678899999999999999999999999999973   35   89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=3.2e-11  Score=98.19  Aligned_cols=110  Identities=18%  Similarity=0.292  Sum_probs=89.2

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++.++..++++.+|.+.|.+++...+||.|. .++++|++|..|++..+......  ..           ...+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~~~--~~-----------~v~~------   61 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGIDL--DT-----------PVSE------   61 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccCCC--cc-----------CHHH------
Confidence            4568899999999999999999999999995 58999999999998755421100  00           0111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|..++.++.+++++.+++..|.++++..+||+++   +|   +++|++|.+|+++
T Consensus        62 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gilt~~dl~~  111 (112)
T cd04624          62 ----------IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK---GG---ELVGVISIRDLVR  111 (112)
T ss_pred             ----------hccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC---CC---cEEEEEEHHHhcc
Confidence                      24677899999999999999999999999999983   36   8999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.33  E-value=2.6e-11  Score=98.67  Aligned_cols=101  Identities=18%  Similarity=0.242  Sum_probs=87.1

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (384)
                      .+..+++++++.+|.+.|.+++...+||+|+.  .++++|+|+..|+......                       .   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-----------------------~---   56 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-----------------------Y---   56 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-----------------------h---
Confidence            46788999999999999999999999999953  4899999999998643210                       1   


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                   |.+++.++.+++++.+++.+|.+++++.+||++    +|   +++|+||..|++++
T Consensus        57 -------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~----~~---~~~Gvvt~~dl~~~  105 (105)
T cd04591          57 -------------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD----EG---RLVGIITRKDLLKA  105 (105)
T ss_pred             -------------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE----CC---eEEEEEEhhhhhcC
Confidence                         466788999999999999999999999999996    26   89999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=3.6e-11  Score=98.07  Aligned_cols=110  Identities=22%  Similarity=0.419  Sum_probs=88.3

Q ss_pred             EEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhcc
Q 016718          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL  246 (384)
Q Consensus       167 vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~  246 (384)
                      ..++.+++++.+|++.|.++++..+||+|. .++++|++|..|+...+....         .+....+   .+       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~---------~~~~~~i---~~-------   62 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESE---------ELKDAKV---RE-------   62 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhh---------hhcCCcH---HH-------
Confidence            568899999999999999999999999995 689999999999976432110         0000001   11       


Q ss_pred             ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       247 ~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                               +|..++.++.+++++.+++..|.+++.+++||+|+   +|   +++|++|..|+++
T Consensus        63 ---------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g---~~~Gvvt~~dl~~  112 (113)
T cd04615          63 ---------VMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD---KG---KVGGIVTEDDILR  112 (113)
T ss_pred             ---------hccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEEHHHhhc
Confidence                     25677899999999999999999999999999983   36   8999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=4.7e-11  Score=97.23  Aligned_cols=111  Identities=20%  Similarity=0.349  Sum_probs=86.7

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      .+.++.+++++.+|.+.|.+++...++|.+  .++++|++|..|+++.+......   .     ...+   ..+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~~~---~-----~~~~---v~~------   62 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME--RGELVGLLTFREVLQAMAQHGAG---V-----LDTT---VRA------   62 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHHHHHHHhcCCc---h-----hcCC---HHH------
Confidence            356889999999999999999987777765  48999999999998765421100   0     0000   111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                +|..++.++.+++++.+|+.+|.+++..++||+|+    |   +++|+||.+|++++
T Consensus        63 ----------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~----~---~~~Gvvt~~dl~~~  112 (112)
T cd04625          63 ----------IMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG----G---TLLGVISFHDVAKA  112 (112)
T ss_pred             ----------HhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC----C---EEEEEEEHHHhhcC
Confidence                      24567889999999999999999999999999972    6   89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.9e-11  Score=99.88  Aligned_cols=120  Identities=20%  Similarity=0.390  Sum_probs=89.9

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++++++++.+|.+.|.++++..+||+|.  ++++|++|..|++..+......  ..     .......+.+.  .+ 
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~--~~-----~~~~~~~~~~~--~~-   69 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPL--VR-----DRHQERRIRNL--PV-   69 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhc--cc-----chhhhhhhhcc--CH-
Confidence            4578999999999999999999999999994  8999999999998755421110  00     00000000000  00 


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                              ..+|..++.++.+++++.+++.+|.+++.+++||+|   + |   +++|+||.+|++++
T Consensus        70 --------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvi~~~dl~~~  121 (121)
T cd04633          70 --------SDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD---D-G---KLVGIVTRTDILRY  121 (121)
T ss_pred             --------HHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEE---C-C---EEEEEEEHHHhhcC
Confidence                    013567889999999999999999999999999998   3 6   89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=3.6e-11  Score=98.53  Aligned_cols=110  Identities=16%  Similarity=0.280  Sum_probs=85.5

Q ss_pred             cEEEEecCccHHHHHHHHHHcC-CCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~-i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      ++++++.+.++.+|.+.|.+++ ...+||.|  .++++|+||..|+++.+....    ..     ...   .+.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~----~~-----~~~---~i~~-----   62 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGK----DL-----SDL---PIGE-----   62 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCC----Cc-----ccc---CHHH-----
Confidence            4568899999999999999888 66777777  379999999999987553210    00     000   0111     


Q ss_pred             ccccccCCCCCCCCCCceEeCCC--CCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPY--DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~--~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                 .|..+++++.++  +++.+|+.+|.+++.+.+||+|+   +|   +++|+||.+|+++
T Consensus        63 -----------~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Gvit~~dl~~  114 (115)
T cd04620          63 -----------VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD---QG---QLIGLVTAESIRQ  114 (115)
T ss_pred             -----------hcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC---CC---CEEEEEEhHHhhc
Confidence                       246778889887  79999999999999999999983   36   8999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.32  E-value=4e-11  Score=97.24  Aligned_cols=110  Identities=22%  Similarity=0.397  Sum_probs=88.7

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +.+++++++++.+|++.|.+.++..+||.|.  ++++|+++..|+........     .  +.   ..   ..+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-----~--~~---~~---~~~------   60 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR-----E--AT---VL---VGD------   60 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc-----c--cc---cC---HHH------
Confidence            4678999999999999999999999999994  89999999999976442110     0  00   00   011      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                .|..++.++.+++++.+++..|.+++.+++||+|+   +|   +++|+||..||+++
T Consensus        61 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~~  111 (111)
T cd04612          61 ----------VMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD---SG---RLVGIVSRSDLLRA  111 (111)
T ss_pred             ----------hccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC---CC---CEEEEEEHHHhhhC
Confidence                      25678899999999999999999999999999973   36   89999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.31  E-value=2.4e-11  Score=98.66  Aligned_cols=105  Identities=20%  Similarity=0.282  Sum_probs=87.2

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++++++++.+|.+.|.+++...+||+|+ .++++|+++..|++...    ..      .        .+.+.     
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~----~~------~--------~v~~~-----   58 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD----PD------T--------TIEKV-----   58 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc----cc------c--------cHHHH-----
Confidence            4678999999999999999999999999995 68999999999985310    00      0        01221     


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                 |..++.++.+++++.+++++|.+++.+.+||+|+   +|   +++|++|..|+++
T Consensus        59 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~di~~  107 (108)
T cd04596          59 -----------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD---NK---KLLGIISRQDVLK  107 (108)
T ss_pred             -----------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC---CC---CEEEEEEHHHhhc
Confidence                       4567889999999999999999999999999983   46   8999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.31  E-value=4.8e-11  Score=97.68  Aligned_cols=110  Identities=26%  Similarity=0.488  Sum_probs=90.6

Q ss_pred             CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      ..++++.++.++.+|+.+|.++++..+||.+.  .+++|++|.+|+++++........             ...+     
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~-------------~v~~-----   66 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLL-------------PVKE-----   66 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccc-------------cHHH-----
Confidence            57889999999999999999999999999984  489999999999887653321100             0011     


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHh-cCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-NKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~-~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                                 +|+++++++.++.++.++++.|.+ ++++++||++.  +++   +++|++|.+|++
T Consensus        67 -----------v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~--~~~---~lvGivt~~di~  117 (117)
T COG0517          67 -----------VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD--DGG---KLVGIITLSDIL  117 (117)
T ss_pred             -----------hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC--CCC---eEEEEEEHHHcC
Confidence                       367789999999999999999999 79999999984  224   699999999974

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.31  E-value=5.5e-11  Score=96.49  Aligned_cols=108  Identities=17%  Similarity=0.272  Sum_probs=88.3

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++++++++.+|.+.|.+++++.+||.|.  ++++|+++..|+++.......    .          ..+.+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~----~----------~~v~~------   59 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLE----L----------AKVKD------   59 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhcccc----c----------cCHHH------
Confidence            4678999999999999999999999999984  799999999999865432100    0          01122      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|..++.++.+++++.++++.|.+++.+.+||+++   +|   +++|+||..|+++
T Consensus        60 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~  109 (110)
T cd04588          60 ----------VMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD---EG---RPVGIITRTDILR  109 (110)
T ss_pred             ----------HhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEEhHHhhc
Confidence                      24578899999999999999999999999999973   36   8999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.31  E-value=4.7e-11  Score=97.24  Aligned_cols=111  Identities=18%  Similarity=0.302  Sum_probs=87.9

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.+++++.+|++.|.+++...+||.|.  ++++|+||..|++..+......  .      ...++   .+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~--~------~~~~v---~~------   62 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLD--P------ESTLV---ER------   62 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCC--c------CcCCH---HH------
Confidence            5678999999999999999999999999983  8999999999997543321100  0      00011   11      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|..++.++.+++++.+++.+|.+++.+++||+++   +|   +++|+||..|++.
T Consensus        63 ----------i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~---~~---~~~Gvvs~~dl~~  112 (113)
T cd04587          63 ----------VMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK---SG---QVVGLLDVTKLTH  112 (113)
T ss_pred             ----------hcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC---CC---CEEEEEEHHHhcc
Confidence                      25677889999999999999999999999999973   36   8999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.31  E-value=7.5e-11  Score=95.84  Aligned_cols=109  Identities=19%  Similarity=0.358  Sum_probs=87.9

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++.+++.+.++.+|.+.|.++++..+||.|+  ++++|+++..|++..+....     ..    ...++   .+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~-----~~----~~~~i---~~------   61 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEG-----LD----PDTPV---SE------   61 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccC-----CC----ccCCH---HH------
Confidence            5678999999999999999999999999994  89999999999976443110     00    00011   11      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                .|..+++++.+++++.++++.|.+++.+++||++   + |   +++|++|.+|+++
T Consensus        62 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Giit~~di~~  110 (111)
T cd04800          62 ----------VMTAPPITIPPDATVFEALLLMLERGIHHLPVVD---D-G---RLVGVISATDLLR  110 (111)
T ss_pred             ----------HhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhc
Confidence                      2456788999999999999999999999999997   2 6   8999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=3.9e-11  Score=100.50  Aligned_cols=116  Identities=16%  Similarity=0.202  Sum_probs=84.1

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHH--HHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL--RELGTNGSNLTEEELETHTISAWKVGKLQ  243 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l--~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (384)
                      +++++..++++.+|++.|.++++..+||+|+ .++++|+++..|+.+..  ..........     ...+   ..+    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~-----~~~~---v~~----   68 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGISR-----SELT---VAD----   68 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCCCc-----hheE---HHH----
Confidence            3578999999999999999999999999995 68999999999997521  1111000000     0000   111    


Q ss_pred             hccccccCCCCCCCCCCceE--e----CCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          244 LNLKRQMDGNGRPCPRPLVQ--A----GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       244 ~~~~~~~~~~~~~m~~~~it--v----~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                  +|+++...  +    .+++++.++++.|.+++++++||+|+  +.|   +++|+||.+||++
T Consensus        69 ------------im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~--~~~---~~~G~it~~di~~  125 (126)
T cd04640          69 ------------VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR--EHH---QIRGIISTSDIAR  125 (126)
T ss_pred             ------------hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC--CCC---EEEEEEeHHHHhh
Confidence                        24443322  3    37899999999999999999999984  225   7999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=3.8e-11  Score=99.30  Aligned_cols=118  Identities=16%  Similarity=0.337  Sum_probs=89.6

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh---hHHHHHHHHH
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH---TISAWKVGKL  242 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~---~i~~~~~~~~  242 (384)
                      +++++.+++++.+|++.|.+++...+||+|. .++++|+++..|+++..... ..   .  ++....   .-..+.+   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~-~~---~--~~~~~~~~~~~~~~~~---   71 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVR-TS---V--EDQQRTQTKASPTVEK---   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhcccc-cc---c--cchhhhhhhccCcHHH---
Confidence            5678999999999999999999999999985 68999999999997532100 00   0  000000   0000111   


Q ss_pred             hhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          243 QLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       243 ~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                   +|.++++++.+++++.+++..|.+++.+++||+|+   +|   +++|++|..|++++
T Consensus        72 -------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g---~~~Gvit~~dl~~~  122 (122)
T cd04635          72 -------------IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE---KD---QLVGIVDRHDVLKA  122 (122)
T ss_pred             -------------HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC---CC---cEEEEEEhHHhhcC
Confidence                         25677899999999999999999999999999983   36   89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.30  E-value=7.7e-11  Score=95.54  Aligned_cols=109  Identities=18%  Similarity=0.275  Sum_probs=88.2

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++.++++++++.+|++.|.+++...+||.|.  ++++|+++..|+++........          ..   .+.+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~----------~~---~v~~------   60 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDL----------QT---PVGE------   60 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCC----------Cc---CHHH------
Confidence            4668999999999999999999999999984  8999999999998655321100          00   0111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|..+++++.+++++.+++..|.+.+.+.+||+|.   +|   +++|+||.+|+++
T Consensus        61 ----------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~di~~  110 (111)
T cd04611          61 ----------VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD---DG---ELLGLLSQTDLLQ  110 (111)
T ss_pred             ----------hcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC---CC---cEEEEEEhHHhhc
Confidence                      24677899999999999999999999999999983   36   7999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.30  E-value=5.6e-11  Score=97.74  Aligned_cols=121  Identities=20%  Similarity=0.347  Sum_probs=90.3

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++.+++.+.++.+|++.|.++++..+||+|.  ++++|+++..|+...+......   ....+.... .   ...  .+ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~---~~~~~~~~~-~---~~~--~~-   69 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATT---LDIWELYYL-L---SKI--KV-   69 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhccccc---ccchhhhhh-h---ccc--CH-
Confidence            4678999999999999999999999999995  8999999999998654321110   000000000 0   000  00 


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                              ..+|..+++++.+++++.+++..|.+++.+++||+|+   +|   +++|+||..|++++
T Consensus        70 --------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvvt~~di~~~  122 (122)
T cd04585          70 --------SDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD---QG---RLVGIITESDLFRA  122 (122)
T ss_pred             --------HHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC---CC---cEEEEEEHHHhhhC
Confidence                    0135678899999999999999999999999999973   36   89999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.30  E-value=5.8e-11  Score=95.93  Aligned_cols=106  Identities=14%  Similarity=0.264  Sum_probs=87.3

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++.+++++.++.+|.+.|.++++..+||.|. .++++|+++..|++.....   . ..             +.+      
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~---~-~~-------------v~~------   58 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYKE---A-KS-------------LED------   58 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhhc---C-Cc-------------HhH------
Confidence            4568899999999999999999999999995 5899999999999753310   0 00             111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                .|...+.++.+++++.+|+..|.+++.+++||+++   +|   +++|++|.+|+++
T Consensus        59 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~---~g---~~~Gvit~~~l~~  108 (109)
T cd04583          59 ----------IMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE---DG---KLVGLITRSSLVD  108 (109)
T ss_pred             ----------hhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC---CC---eEEEEEehHHhhc
Confidence                      24567889999999999999999999999999983   36   8999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=1.1e-10  Score=95.04  Aligned_cols=110  Identities=18%  Similarity=0.324  Sum_probs=87.8

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.+++++.+|++.|.+++...+||+|+  ++++|+++..|++..+..........           ...+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~-----------~~~~------   62 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREV-----------PVGE------   62 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccC-----------CHHH------
Confidence            5678999999999999999999999999995  49999999999987553211000000           0111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|..++.++.+++++.++++.|.+++.+.+||+|+    +   +++|+||.+|+++
T Consensus        63 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvi~~~di~~  111 (112)
T cd04802          63 ----------VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD----D---ELVGIVTTTDIVM  111 (112)
T ss_pred             ----------hcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC----C---EEEEEEEhhhhhc
Confidence                      24677889999999999999999999999999973    4   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.29  E-value=9.1e-11  Score=119.79  Aligned_cols=128  Identities=13%  Similarity=0.273  Sum_probs=100.3

Q ss_pred             HHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCC--CeEEEEeehHHHHHHHHHhccC
Q 016718          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK--GRFVGVLSALDFILILRELGTN  220 (384)
Q Consensus       143 ~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~--~~~vGilT~~Dli~~l~~~~~~  220 (384)
                      .+...+++.+   +..+.|  ..+++++++++++.+|.++|.+++++.+||+|.+.  ++++|+||.+|++...    ..
T Consensus        71 ~q~~~V~~Vk---~~~~~~--~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~----~~  141 (450)
T TIGR01302        71 EQAEQVKRVK---RAENGI--ISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK----DK  141 (450)
T ss_pred             HHHHHHhhhc---cccCce--ecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh----cC
Confidence            3334444444   345566  45788999999999999999999999999999632  6999999999996321    00


Q ss_pred             CCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCccc
Q 016718          221 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE  299 (384)
Q Consensus       221 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~-~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~  299 (384)
                        .        .+   +.+                +|+ .+++++.+++++.+|+.+|.+++++.+||+|+   +|   +
T Consensus       142 --~--------~~---V~d----------------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe---~G---~  186 (450)
T TIGR01302       142 --G--------KP---VSE----------------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK---NG---E  186 (450)
T ss_pred             --C--------CC---HHH----------------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---c
Confidence              0        01   122                245 48999999999999999999999999999984   46   8


Q ss_pred             EEEEeeHHHHHHHHH
Q 016718          300 ILYLASLSDILKCIC  314 (384)
Q Consensus       300 lvGiit~~dil~~l~  314 (384)
                      ++|+||.+||++.+.
T Consensus       187 lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       187 LVGLITMKDIVKRRK  201 (450)
T ss_pred             EEEEEEhHHhhhccc
Confidence            999999999999863

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.28  E-value=4.1e-11  Score=96.77  Aligned_cols=100  Identities=18%  Similarity=0.183  Sum_probs=83.7

Q ss_pred             EEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhccc
Q 016718          168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK  247 (384)
Q Consensus       168 v~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~  247 (384)
                      +++.+++++.+|.+.|.++++..+||+|.  ++++|+++..|+++..     . .             ...+        
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~-----~-~-------------~~~~--------   54 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT-----Y-G-------------DVVD--------   54 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc-----c-c-------------chhh--------
Confidence            57899999999999999999999999993  8999999999986421     0 0             0111        


Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       248 ~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                              .|.....++.+++++.+|+..|.+++.+.+||+|+    |   +++|++|..|+++
T Consensus        55 --------~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~---~~iGvit~~dl~~  103 (104)
T cd04594          55 --------YIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD----G---KFKGIVTLDSILD  103 (104)
T ss_pred             --------hhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC----C---EEEEEEEHHHhhc
Confidence                    14566789999999999999999999999999972    6   8999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.27  E-value=9.1e-11  Score=120.89  Aligned_cols=131  Identities=13%  Similarity=0.137  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhc
Q 016718          141 LQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELG  218 (384)
Q Consensus       141 ~e~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~  218 (384)
                      .|.....+++.++ ....  |  ..+++++.+++|+.+|.++|.++++..+||+|+.  .++++|+||.+|+....   .
T Consensus        89 ~E~q~~~Irkvk~-~~~g--m--i~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---~  160 (505)
T PLN02274         89 AEEQAAIVRKAKS-RRVG--F--VSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---D  160 (505)
T ss_pred             HHHHHHHHHHhhc-cccc--c--cCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---c
Confidence            3344444444443 2322  5  4578899999999999999999999999999853  37999999999985321   0


Q ss_pred             cCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCC--ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCC
Q 016718          219 TNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS  296 (384)
Q Consensus       219 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~--~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~  296 (384)
                      .. .             .+.++                |+++  ++++.+++++.+|+++|.+++++++||+|+   ++ 
T Consensus       161 ~~-~-------------~V~eI----------------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~---~g-  206 (505)
T PLN02274        161 RE-T-------------KLSEV----------------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE---DG-  206 (505)
T ss_pred             cC-C-------------cHHHH----------------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC-
Confidence            00 0             11222                4544  889999999999999999999999999983   36 


Q ss_pred             cccEEEEeeHHHHHHHHHh
Q 016718          297 CQEILYLASLSDILKCICR  315 (384)
Q Consensus       297 ~~~lvGiit~~dil~~l~~  315 (384)
                        +|+|+||.+||++++..
T Consensus       207 --~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        207 --ELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             --eEEEEEEHHHHHHHhhC
Confidence              89999999999999864

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.27  E-value=5e-11  Score=124.75  Aligned_cols=216  Identities=14%  Similarity=0.142  Sum_probs=133.6

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccC--C-----------
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN--G-----------  221 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~--~-----------  221 (384)
                      .+|.|+|  ..+++++++++++.+|+++|.+++++.+||+|+ +++++|+||..|+.+.+......  .           
T Consensus        68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~  144 (546)
T PRK14869         68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE-EGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII  144 (546)
T ss_pred             CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence            6899999  568899999999999999999999999999995 68999999999999865432100  0           


Q ss_pred             -----------CCC------------Chhhhh----hh-------hHH-----------------------HHHHHHHhh
Q 016718          222 -----------SNL------------TEEELE----TH-------TIS-----------------------AWKVGKLQL  244 (384)
Q Consensus       222 -----------~~~------------~~~~l~----~~-------~i~-----------------------~~~~~~~~~  244 (384)
                                 ...            ..+.+.    ..       ...                       ...+..++.
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~  224 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKEN  224 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhC
Confidence                       000            000000    00       000                       000000000


Q ss_pred             c---------------cccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHH
Q 016718          245 N---------------LKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD  308 (384)
Q Consensus       245 ~---------------~~~~~~~~~~~m~-~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~d  308 (384)
                      +               ..........+|+ ++++++++++++.+|..+|.+++++++||+|+   +|   +++|+||..|
T Consensus       225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~---~g---~lvGiit~~d  298 (546)
T PRK14869        225 GVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE---DG---KVVGVISRYH  298 (546)
T ss_pred             CCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC---CC---CEEEEEEHHH
Confidence            0               0000000012588 88999999999999999999999999999983   46   8999999999


Q ss_pred             HHHHHHhhcccCC--CCcccccccccccc-cccccc-ccccCCCCCceEe---CCCCCHHHHHHHHHhCCCceeeeccc
Q 016718          309 ILKCICRHFKHSS--SSLPILQQPVSSIQ-LGTWVP-RIGEANGRPFAML---RPTASLGSALALLVQGDLTLFQQPAI  380 (384)
Q Consensus       309 il~~l~~~~~~~~--~~~~~~~~~v~~l~-ig~~~~-~v~~~~~~~v~tv---~~d~~v~~a~~~m~~~~is~lPV~~~  380 (384)
                      +++....++.-..  ........ +.+.. ++-+-. +++.++.+.++.+   ....+...+.++|.++++...|++|-
T Consensus       299 l~~~~~~~~iLVD~~e~~q~~~~-~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~  376 (546)
T PRK14869        299 LLSPVRKKVILVDHNEKSQAVEG-IEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG  376 (546)
T ss_pred             hhccccCceEEEcCccccccccc-hhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH
Confidence            9996543211000  00000000 00000 000111 1344555555544   34566778999999999999988763

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1.4e-10  Score=94.46  Aligned_cols=111  Identities=20%  Similarity=0.375  Sum_probs=87.2

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++++++++.+|.+.|.+++...+||.|+  ++++|++|..|++..+......   .     ...+   ..+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~---~-----~~~~---~~~------   62 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRD---P-----DTTT---VGD------   62 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCC---c-----ccCC---HHH------
Confidence            5678999999999999999999999999994  8999999999986322110000   0     0000   111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|...+.++.+++++.+++..|.+++.+++||+|+   +|   +++|++|..|+++
T Consensus        63 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~  112 (113)
T cd04622          63 ----------VMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DG---RLVGIVSLGDLAR  112 (113)
T ss_pred             ----------hccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence                      24567889999999999999999999999999973   36   8999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.25  E-value=3.1e-11  Score=95.08  Aligned_cols=75  Identities=27%  Similarity=0.406  Sum_probs=61.8

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEE-ecCCceEEEEEEEcCEeecCCCCCeeeCCCCCeeeE
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIIC-RLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~-~L~~G~y~YkFiVDG~w~~d~~~p~~~d~~G~~nNv   99 (384)
                      .++|+ |...+++|.|.|+|++|.. .+|++.+  +|.|++++ .|++|.|+|+|++||.|+.||.++...-..+...|.
T Consensus         7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~--~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~   83 (85)
T cd02858           7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDE--AGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG   83 (85)
T ss_pred             cEEEEEECCCCCEEEEEeecCCCcc-EeCeECC--CeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence            57887 5557899999999998875 7899865  79999998 488899999999999999999999866444554444

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.25  E-value=9.5e-11  Score=120.57  Aligned_cols=108  Identities=22%  Similarity=0.307  Sum_probs=88.1

Q ss_pred             EEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       168 v~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      .++.+++|+.+|+++|.++++..+||+|..  .++++|+||..|+...    ...   .      ..+   +.++     
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~----~~~---~------~~~---V~dI-----  166 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS----RMS---L------DTK---VKDF-----  166 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc----ccC---C------CCC---HHHH-----
Confidence            489999999999999999999999999952  5799999999998421    000   0      001   1222     


Q ss_pred             cccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          246 LKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       246 ~~~~~~~~~~~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                                 |+.  +++++.+++++.+|+++|.+++++++||+|+   +|   +|+|+||.+|+++..
T Consensus       167 -----------Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~---~g---~LvGIIT~~Dilk~~  219 (502)
T PRK07107        167 -----------MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK---NG---NLVYLVFRKDYDSHK  219 (502)
T ss_pred             -----------hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEhHHHHhcc
Confidence                       454  7899999999999999999999999999983   36   899999999999964

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.24  E-value=1.3e-10  Score=94.63  Aligned_cols=111  Identities=20%  Similarity=0.301  Sum_probs=88.4

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++.++.++.++.+|.+.|.+++.+.+||.|. .++++|+|+..|+.+.+.....    .     ...++   .+      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~----~-----~~~~v---~~------   63 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLD----I-----LTLPV---AD------   63 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCc----c-----ccCCH---HH------
Confidence            3557889999999999999999999999995 6899999999999876542110    0     00001   11      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                .|..++.++.+++++.++++.|.+++.+.+||+++   +|   +++|+||..||++
T Consensus        64 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~iG~it~~di~~  113 (114)
T cd04604          64 ----------VMTRNPKTIDPDALAAEALELMEENKITALPVVDD---NG---RPVGVLHIHDLLR  113 (114)
T ss_pred             ----------hhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEEEHHHhhc
Confidence                      24567789999999999999999999999999973   36   8999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.24  E-value=1.5e-10  Score=93.62  Aligned_cols=109  Identities=22%  Similarity=0.340  Sum_probs=84.8

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      .+++++.++++.+|.+.|.++++..+||+|.  ++++|++|..|+.+.+......   .     . .   ...+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~---~-----~-~---~~~~------   61 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK---F-----S-L---PVRE------   61 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc---c-----C-c---CHHH------
Confidence            4678899999999999999999999999994  8999999999998765321100   0     0 0   0111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                .|..+++++.+++++.+++.+|.+ . +.+||++.   +|   +++|++|.+||++|
T Consensus        62 ----------~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~---~~---~~~Gvvt~~di~~~  110 (110)
T cd04609          62 ----------VMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE---GG---KFVGIITRADLLKY  110 (110)
T ss_pred             ----------HhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec---CC---eEEEEEeHHHhhcC
Confidence                      246678899999999999999988 3 45788873   36   89999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.24  E-value=1.2e-10  Score=95.56  Aligned_cols=107  Identities=19%  Similarity=0.294  Sum_probs=84.0

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (384)
                      .++++..++++.+|.+.|.++++..+||+|..  .++++|+++..|++....    ...             ...+.   
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~----~~~-------------~v~~~---   62 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD----SET-------------PLSEV---   62 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc----cCC-------------CHHHh---
Confidence            45688999999999999999999999999842  589999999999853210    000             01222   


Q ss_pred             hccccccCCCCCCCCCCceEeCC--CCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          244 LNLKRQMDGNGRPCPRPLVQAGP--YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       244 ~~~~~~~~~~~~~m~~~~itv~~--~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                   |.....++.+  ++++.+++..|.+++++.+||+|+   +|   +++|+||.+||++
T Consensus        63 -------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~---~~---~~~Gvit~~di~~  113 (114)
T cd04602          63 -------------MTPREVLVVAPTGITLEEANEILRESKKGKLPIVND---DG---ELVALVTRSDLKK  113 (114)
T ss_pred             -------------cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC---CC---eEEEEEEHHHhhc
Confidence                         4555556655  999999999999999999999973   36   8999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.24  E-value=2.3e-10  Score=94.32  Aligned_cols=119  Identities=19%  Similarity=0.339  Sum_probs=89.0

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++.+++.++++.+|++.|.+++...+||+|. .++++|+|+..|+++............+.......+   ..+      
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~---v~~------   71 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMP---VKE------   71 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcC---HHH------
Confidence            4678899999999999999999999999995 589999999999976543211100000000000000   111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|..+++++.+++++.+++..|.+++.+.+||+|   + |   +++|++|..||++
T Consensus        72 ----------~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~~Gvv~~~di~~  120 (121)
T cd04584          72 ----------IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE---D-G---RLVGIITETDLLR  120 (121)
T ss_pred             ----------HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHhhc
Confidence                      2456788999999999999999999999999997   2 6   8999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.24  E-value=2e-10  Score=92.19  Aligned_cols=102  Identities=18%  Similarity=0.272  Sum_probs=85.0

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.+++++.+|.+.|.+++...+||+|  +++++|++|..|++...    .. .          .   ..+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~Giv~~~~l~~~~----~~-~----------~---~~~------   55 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE--DGKLVGIITSRDVRRAH----PN-R----------L---VAD------   55 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEehHHhhccc----cc-C----------C---HHH------
Confidence            456889999999999999999999999998  37999999999986421    00 0          0   111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                                .|..++.++.+++++.+|++.|.+++...+||+|   + |   +++|+||..|++
T Consensus        56 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~~l~  103 (105)
T cd04599          56 ----------AMTREVVTISPEASLLEAKRLMEEKKIERLPVLR---E-R---KLVGIITKGTIA  103 (105)
T ss_pred             ----------HccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE---C-C---EEEEEEEHHHhc
Confidence                      2456788999999999999999999999999998   3 6   899999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.23  E-value=1.9e-10  Score=92.68  Aligned_cols=105  Identities=19%  Similarity=0.362  Sum_probs=86.4

Q ss_pred             CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      .+++++..+.++.+|++.|.+++...+||.|.  ++++|+++..|++..      . ...           .+.+     
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~------~-~~~-----------~~~~-----   56 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK------D-PDE-----------TVEE-----   56 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc------C-ccc-----------cHHH-----
Confidence            35778999999999999999999999999983  899999999998631      0 000           1122     


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                 +|...+.++.+++++.+|+..|.+++.+++||+++   +|   +++|+|+..|+++
T Consensus        57 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvi~~~di~~  106 (107)
T cd04610          57 -----------IMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE---NN---NLVGIITNTDVIR  106 (107)
T ss_pred             -----------hCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC---CC---eEEEEEEHHHhhc
Confidence                       24567889999999999999999999999999983   36   8999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.23  E-value=1e-10  Score=95.08  Aligned_cols=103  Identities=18%  Similarity=0.357  Sum_probs=83.0

Q ss_pred             EecCccHHHHHHHHHHcC-----CCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          170 LDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       170 i~~~~~l~~A~~~L~~~~-----i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      +.+++++.+|++.|.+++     ...+||+|+ .++++|+||..|++..      . ...           ...+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~------~-~~~-----------~v~~-----   57 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLA------D-PDT-----------PVSD-----   57 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcC------C-Ccc-----------hHHH-----
Confidence            578899999999999887     578999985 6899999999998631      0 000           0122     


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                                 +|..++.++.+++++.+++..|.+++.+.+||+|+   +|   +++|+||.+|+++++
T Consensus        58 -----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dll~~~  109 (109)
T cd04606          58 -----------IMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EG---RLVGIITVDDVIDVI  109 (109)
T ss_pred             -----------HhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CC---cEEEEEEhHHhhhhC
Confidence                       14567899999999999999999999999999973   36   899999999999763

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=7.3e-11  Score=95.07  Aligned_cols=78  Identities=17%  Similarity=0.244  Sum_probs=69.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      .++++++++++.+|+++|.+++++++||+|+  ++|   +++|+||..|+++.+.                         
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Givt~~Dl~~~~~-------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ---QFVGMLTITDFILILR-------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC---EEEEEEEHHHHhhhee-------------------------
Confidence            4789999999999999999999999999983  235   8999999999987431                         


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                                 +.++.+++++.+|+++|.+++++++||+
T Consensus        52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVv   79 (98)
T cd04618          52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVI   79 (98)
T ss_pred             -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEE
Confidence                       3689999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=2.5e-10  Score=98.06  Aligned_cols=136  Identities=19%  Similarity=0.347  Sum_probs=91.7

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCC-----CChhhhhhhhHHHHHHH
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN-----LTEEELETHTISAWKVG  240 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~-----~~~~~l~~~~i~~~~~~  240 (384)
                      +++++++++++.+|++.|.++++.++||+|+  ++++|++|..|++..+.........     ..........+..|.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET   79 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence            4678999999999999999999999999994  7999999999998766432210000     00000000000111111


Q ss_pred             HHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       241 ~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                      ......... .....+|..++.++.+++++.+|+..|.+++.+++||++.    |   +++|++|.+|+++
T Consensus        80 ~~~~~~~~~-~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~---~~~Gvvt~~dl~~  142 (143)
T cd04634          80 KRALTDAGK-MKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED----G---RLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHhc-CCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHhhc
Confidence            110000000 0000135678899999999999999999999999999972    6   8999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=99.22  E-value=4.7e-10  Score=113.30  Aligned_cols=166  Identities=19%  Similarity=0.198  Sum_probs=125.8

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (384)
                      |++.++.|+|..-.+++.++.++++.++++.+.+++.+.+||.+++.++++|+|..+|++..+...    ....      
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~----~~~~------  253 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK----KEFT------  253 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc----CcCC------
Confidence            468999999999999999999999999999999999999999987668999999999998643211    0010      


Q ss_pred             hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                        +..+.+                 .-+++..|+.+.++.++++.|.+++.|-..|+|+   .|   ...||||..||++
T Consensus       254 --~~~l~~-----------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~~GiVTleDilE  308 (413)
T PRK11573        254 --KENMLR-----------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILE  308 (413)
T ss_pred             --HHHHHh-----------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---CeEEEeeHHHHHH
Confidence              111111                 1357889999999999999999999999999983   46   6999999999999


Q ss_pred             HHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHH
Q 016718          312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  367 (384)
Q Consensus       312 ~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m  367 (384)
                      .+.........  ..-...+..+.-             ..+.++..+++.++-+.+
T Consensus       309 eivGei~de~d--~~~~~~i~~~~~-------------~~~~v~G~~~l~d~~~~l  349 (413)
T PRK11573        309 EIVGDFTTSMS--PTLAEEVTPQND-------------GSVIIDGTANVREINKAF  349 (413)
T ss_pred             HHhCCCCcccC--cccccceEEecC-------------CEEEEEeeeEHHHHHHHh
Confidence            99976543211  000111222222             345788888888888776

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=3.3e-10  Score=90.80  Aligned_cols=111  Identities=28%  Similarity=0.487  Sum_probs=89.5

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++++++.+.++.+|++.|.+++...+||+|. .++++|+++..|++..+......  ..     .     ...+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~--~~-----~-----~~~~------   62 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLD--PL-----V-----TVGD------   62 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccCC--cc-----c-----cHHH------
Confidence            4678899999999999999999999999995 58999999999998765432111  00     0     0011      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                .|..++.++.+++++.+++..|.+++.+.+||+|.   +|   +++|++|..|+++
T Consensus        63 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~  112 (113)
T cd02205          63 ----------VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD---EG---RLVGIVTRSDILR  112 (113)
T ss_pred             ----------HhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEHHHhhc
Confidence                      24567889999999999999999999999999984   36   8999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.19  E-value=2.9e-10  Score=97.07  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=79.8

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      +++++.+++++.+|++.|.++++..+||+|+ .++++|+||..|+++.+............+-+.... ....+++..  
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~--   77 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT-CLVSSVCTK--   77 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhccccc-ccHHHHhhh--
Confidence            4679999999999999999999999999996 689999999999988764321110000000000000 000111100  


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEec
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS  290 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~  290 (384)
                           ....+.|+.+++++.+++++.+|+.+|.+++++++||+|+
T Consensus        78 -----~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          78 -----GISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             -----hhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence                 0000125678999999999999999999999999999984

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.19  E-value=1.5e-10  Score=93.68  Aligned_cols=106  Identities=20%  Similarity=0.329  Sum_probs=83.9

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++++++.++++.+|.+.|.+++...+||.|. .++++|++|..|++...    ..  ..        ++   .+      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~----~~--~~--------~v---~~------   58 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFET----DL--DK--------PV---SE------   58 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeecc----cC--CC--------CH---HH------
Confidence            4678899999999999999999999999995 58999999999985210    00  00        11   11      


Q ss_pred             cccccCCCCCCCCCCceEeCC-CCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGP-YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~-~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                +|...+..+.+ ++++.+|+.+|.+++.+++||+|+   +|   +++|+||.+|+++
T Consensus        59 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~dil~  109 (110)
T cd04601          59 ----------VMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EG---KLKGLITVKDIEK  109 (110)
T ss_pred             ----------hcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CC---CEEEEEEhhhhhc
Confidence                      13444556666 999999999999999999999973   36   8999999999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.19  E-value=3.5e-10  Score=115.68  Aligned_cols=127  Identities=17%  Similarity=0.268  Sum_probs=100.6

Q ss_pred             HHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCCh
Q 016718          147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE  226 (384)
Q Consensus       147 ~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~  226 (384)
                      ...++|+..++.++|  +.+++++.+++++.+|++.|.++++..+||+|. .++++|+||..|+++.+......   .  
T Consensus       327 ~~~~~l~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~---~--  398 (454)
T TIGR01137       327 TVFDVLKNATVKDLH--LPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKAN---P--  398 (454)
T ss_pred             cHHHHhccCCHHHhC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCCC---c--
Confidence            456679999999999  567899999999999999999999999999995 68999999999998755421100   0  


Q ss_pred             hhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeH
Q 016718          227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  306 (384)
Q Consensus       227 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~  306 (384)
                         + .+   +.+                +|..++.++.+++++.+++.+|.+++   .||+++   +|   +++|+||.
T Consensus       399 ---~-~~---v~~----------------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~---~g---~liGvvt~  446 (454)
T TIGR01137       399 ---D-DA---VSK----------------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE---EG---KPIGVVTK  446 (454)
T ss_pred             ---C-CC---HHH----------------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE---CC---EEEEEEEH
Confidence               0 01   111                25678889999999999999998864   355552   36   89999999


Q ss_pred             HHHHHHH
Q 016718          307 SDILKCI  313 (384)
Q Consensus       307 ~dil~~l  313 (384)
                      +||+++|
T Consensus       447 ~dll~~l  453 (454)
T TIGR01137       447 IDLLSFL  453 (454)
T ss_pred             HHHHHhh
Confidence            9999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.19  E-value=1.5e-10  Score=110.07  Aligned_cols=113  Identities=17%  Similarity=0.148  Sum_probs=91.4

Q ss_pred             ccccccCCCCCc-EEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          155 HTVYELLPDSGK-VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       155 ~~~~dvmp~s~~-vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      .++.++|.  .+ ++++.+++++.+|++.|.+.++..+||+|+ +++++|+||..|+++.+.... .   .     +   
T Consensus       155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~~-~---~-----~---  219 (268)
T TIGR00393       155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGGG-S---L-----K---  219 (268)
T ss_pred             hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcCC-c---c-----c---
Confidence            67899994  44 789999999999999999999999999995 689999999999987543110 0   0     0   


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEee
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS  305 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit  305 (384)
                       ....+                +|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+|+
T Consensus       220 -~~v~~----------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~GvI~  268 (268)
T TIGR00393       220 -SEVRD----------------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD---HN---KVLGVLH  268 (268)
T ss_pred             -CcHHH----------------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---eEEEEEC
Confidence             00122                35788999999999999999999999999999983   36   8999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.16  E-value=3.3e-10  Score=96.67  Aligned_cols=111  Identities=17%  Similarity=0.120  Sum_probs=79.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCC-ccccc---ccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQ---QPVSSIQ  335 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~-~~~~~---~~v~~l~  335 (384)
                      .++++.+++++.+|++.|.++++.++||+|+   +|   +++|+||..|+++++.......... ...+.   ..+.++.
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~   75 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC   75 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence            4689999999999999999999999999983   36   8999999999999886532110000 00000   0111111


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                      ....   +.+.|.++++++++++++.+|+++|.+++++++||+-
T Consensus        76 ~~~~---~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd  116 (133)
T cd04592          76 TKGI---SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK  116 (133)
T ss_pred             hhhh---hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence            1000   1123457899999999999999999999999999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.16  E-value=3.9e-10  Score=112.38  Aligned_cols=125  Identities=25%  Similarity=0.364  Sum_probs=98.0

Q ss_pred             CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      ..+..+..++|+.+|++.|.++++.++||+|. .|+.+|+++..|...........  +.   ++   +  .+.+.....
T Consensus       237 ~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~--~~---~~---~--~l~~~~~~~  305 (381)
T KOG1764|consen  237 SNIASISEDTPVIEALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYN--NL---DL---S--CLSEALSHR  305 (381)
T ss_pred             hhheeecCCCcHHHHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccC--cc---ch---h--HHHHHhhhc
Confidence            35899999999999999999999999999996 56779999999998765533221  11   11   1  012222111


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH  316 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~  316 (384)
                      +          ....++++|.++.+|.+++..|..+++||+.|+|+   +|   .|+|+||.+||+.++...
T Consensus       306 ~----------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~---~~---~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  306 P----------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE---DG---VLVGVISLSDILSYLVLT  361 (381)
T ss_pred             c----------cccCccEEEeecchHHHHHHHHHhcCceEEEEEcC---CC---cEEEEeeHHHHHHHHHhC
Confidence            1          12456999999999999999999999999999984   46   899999999999999864

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.15  E-value=8.2e-10  Score=90.82  Aligned_cols=113  Identities=15%  Similarity=0.163  Sum_probs=85.5

Q ss_pred             cEEEEecCccHHHHHHHHHHcC-CCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~-i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      ++.++.+++++.+|++.|.+.+ +..+||+|+  ++++|+++..|+++++....      ........+   +.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~------~~~~~~~~~---v~~-----   65 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPY------GRALYGKKP---VSE-----   65 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchh------hHHHHcCCc---HHH-----
Confidence            4557889999999999999887 899999995  89999999999976553210      000000001   111     


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCC---eeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA---TVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~---~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                 .|..+++++.+++++.+|+..|.+++.+   .+||++.   +|   +++|+||..|+++
T Consensus        66 -----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvvs~~di~~  118 (119)
T cd04598          66 -----------VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---EG---RYLGIGTVKDLLR  118 (119)
T ss_pred             -----------hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee---CC---eEEEEEEHHHHhc
Confidence                       3577889999999999999999999865   3468873   36   8999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.13  E-value=5.8e-10  Score=92.32  Aligned_cols=102  Identities=16%  Similarity=0.229  Sum_probs=77.8

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|++|.+|+++++..+...      ....++.+.    
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~----   64 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEA----   64 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHH----
Confidence            36789999999999999999999999999983   36   899999999999876433111      001111110    


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       + .....|..++.++.+++++.+|+++|.+++++.+||+
T Consensus        65 -~-~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  102 (120)
T cd04641          65 -L-ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVV  102 (120)
T ss_pred             -H-hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEE
Confidence             0 0112345678999999999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.13  E-value=7e-10  Score=114.25  Aligned_cols=116  Identities=19%  Similarity=0.232  Sum_probs=93.2

Q ss_pred             cccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       158 ~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      .+.|  ...++++.+++++.+|.++|.++++..+||+|++  .++++|+||.+|+...     .. ..        ..  
T Consensus        99 e~g~--i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-----~~-~~--------~~--  160 (495)
T PTZ00314         99 ENGF--IMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-----KD-KS--------TP--  160 (495)
T ss_pred             cccc--ccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-----cc-CC--------CC--
Confidence            3455  3466899999999999999999999999999853  3799999999998521     00 00        01  


Q ss_pred             HHHHHHHhhccccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                       +.+                +|++  +++++.+++++.+|+++|.+++++.+||+|+   ++   +++|+||.+||++..
T Consensus       161 -V~d----------------iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~---~g---~liGIIT~~DIl~~~  217 (495)
T PTZ00314        161 -VSE----------------VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND---NG---ELVALVSRSDLKKNR  217 (495)
T ss_pred             -HHH----------------hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEehHhhhcc
Confidence             122                2555  8999999999999999999999999999984   36   899999999999885


Q ss_pred             H
Q 016718          314 C  314 (384)
Q Consensus       314 ~  314 (384)
                      .
T Consensus       218 ~  218 (495)
T PTZ00314        218 G  218 (495)
T ss_pred             c
Confidence            4

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=2.3e-09  Score=86.44  Aligned_cols=104  Identities=20%  Similarity=0.375  Sum_probs=85.6

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (384)
                      ++++++.+.++.+|++.|.+++...+||.|+ .++++|+++..|++..    ...   .           ...+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~v~~~~l~~~----~~~---~-----------~~~~------   56 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK-SGELVGIITRKDLLRN----PEE---E-----------QLAL------   56 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhc----ccc---c-----------hHHH------
Confidence            5678999999999999999999999999985 5899999999998631    000   0           0111      


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                                .|..++.++.+++++.+++..|.+++.+.+||+|.    |   +++|++|..|+++
T Consensus        57 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~---~~~G~it~~d~~~  105 (106)
T cd04638          57 ----------LMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD----G---KLVGIVTVADIVR  105 (106)
T ss_pred             ----------HhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHhhc
Confidence                      13567889999999999999999999999999972    5   8999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=1.2e-09  Score=90.89  Aligned_cols=104  Identities=13%  Similarity=0.153  Sum_probs=77.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++.+++++.+|++.|.+++++++||+|+  ++|   +++|++|+.|+++++..+.............++   .    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~---~----   69 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL---R----   69 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh---h----
Confidence            5778999999999999999999999999984  225   799999999999987644221100000000000   0    


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                         ....|..++.++++++++.+|+++|.+++++++||+
T Consensus        70 ---~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  105 (123)
T cd04627          70 ---DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVV  105 (123)
T ss_pred             ---hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEE
Confidence               112345689999999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.03  E-value=2.2e-09  Score=102.73  Aligned_cols=125  Identities=16%  Similarity=0.201  Sum_probs=106.1

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      -.++.|+|....+...+..++++.+-.++-.+.|...+||+|. ..+++||+|.+|+++..      ++    +.     
T Consensus       187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~------~~----t~-----  250 (432)
T COG4109         187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKK------PS----TT-----  250 (432)
T ss_pred             eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCC------CC----cc-----
Confidence            3578999987778889999999999999999999999999995 78999999999986421      10    01     


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                          .+.               +|++.++++.+.+++..++++|.=.++.-+||+|+   +.   +|+||||.+|+++.|
T Consensus       251 ----ieK---------------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~---n~---~llGiitR~dvlk~l  305 (432)
T COG4109         251 ----IEK---------------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS---NN---TLLGIITRQDVLKSL  305 (432)
T ss_pred             ----HHH---------------HhccCCeeecccchHHHHHHHHHhccceeeeEEcC---Cc---eEEEEEEHHHHHHHH
Confidence                111               48999999999999999999999999999999984   34   899999999999999


Q ss_pred             Hhhccc
Q 016718          314 CRHFKH  319 (384)
Q Consensus       314 ~~~~~~  319 (384)
                      -...++
T Consensus       306 q~~q~q  311 (432)
T COG4109         306 QMIQRQ  311 (432)
T ss_pred             HHhccC
Confidence            876654

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.03  E-value=2.8e-09  Score=88.01  Aligned_cols=94  Identities=15%  Similarity=0.241  Sum_probs=75.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|+..|.++++..+||+|.   +|   +++|++|..|+++++.... .      ..+     ..+++.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~-~------~~~-----~~~~~~   63 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGA-D------LQK-----VPVGVI   63 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCC-C------ccC-----CCHHHH
Confidence            5789999999999999999999999999983   35   7999999999999875321 1      011     122222


Q ss_pred             ccccccCCC--CCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANG--RPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~--~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +       .  .++.++++++++.+|+++|.+++++.+||+
T Consensus        64 ~-------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVv   97 (118)
T cd04617          64 M-------TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVV   97 (118)
T ss_pred             h-------CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEE
Confidence            2       2  268899999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.02  E-value=3.7e-09  Score=86.36  Aligned_cols=96  Identities=21%  Similarity=0.381  Sum_probs=81.4

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      |.+.++++.++.++.+|+.+|.++++.++||++.    +   +++|++|.+|+++++........               
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~~---------------   62 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRLL---------------   62 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCccc---------------
Confidence            4578899999999999999999999999999973    3   69999999999999986543210               


Q ss_pred             cccccccccCCCCCceEeCCCCCHHHHHHHHHh-CCCceeeecc
Q 016718          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQ-GDLTLFQQPA  379 (384)
Q Consensus       337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~-~~is~lPV~~  379 (384)
                           .+.++|.++++++.+++++.+|+++|.+ ++++++||+-
T Consensus        63 -----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~  101 (117)
T COG0517          63 -----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVD  101 (117)
T ss_pred             -----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE
Confidence                 1233455689999999999999999999 7999999974

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.00  E-value=5e-09  Score=85.77  Aligned_cols=96  Identities=10%  Similarity=0.134  Sum_probs=76.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|++.|.+++++.+||+|+  ++|   +++|++|.+|+++++......      ....     .+.+ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~-----~v~~-   64 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDRV-----NVYE-   64 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCcc-----CHHH-
Confidence            5788999999999999999999999999983  215   799999999999977542111      0111     2222 


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            +|.+++.++++++++.+|+++|.+++...+||+
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   97 (114)
T cd04630          65 ------IMTKPLISVSPDMDIKYCARLMERTNIRRAPVV   97 (114)
T ss_pred             ------HhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEe
Confidence                  234688999999999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.98  E-value=3.7e-09  Score=87.54  Aligned_cols=105  Identities=16%  Similarity=0.278  Sum_probs=79.6

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++.+++++.+++..|.+++.+++||+|+   +|   +++|+++.+|+++++.......  ....++....+..   
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~---   70 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRRP--LRGRLRGRDKPET---   70 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccch--hhhhhhccccccc---
Confidence            56889999999999999999999999999973   36   8999999999998775332100  0001110001112   


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                          ++.+|.++++++.+++++.+|+++|.+++++.+||+
T Consensus        71 ----i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv  106 (124)
T cd04600          71 ----VGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVV  106 (124)
T ss_pred             ----HHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEE
Confidence                334456789999999999999999999999999997

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.95  E-value=7.6e-09  Score=84.83  Aligned_cols=95  Identities=16%  Similarity=0.152  Sum_probs=76.2

Q ss_pred             ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccc
Q 016718          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (384)
Q Consensus       261 ~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~  340 (384)
                      +.++.+++++.+|+..|.+++...+||+|+   +|   +++|++|.+|+++++......      ..+.++.        
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~~~v~--------   62 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCTAPVE--------   62 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------cccCCHH--------
Confidence            578999999999999999999999999984   46   899999999999876531101      0111222        


Q ss_pred             cccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          341 PRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       341 ~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                          ++|.++++++.+++++.+|++.|.++++..+||+-
T Consensus        63 ----~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd   97 (114)
T cd04619          63 ----NVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD   97 (114)
T ss_pred             ----HHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEEC
Confidence                23356889999999999999999999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.95  E-value=4.3e-09  Score=103.14  Aligned_cols=98  Identities=15%  Similarity=0.106  Sum_probs=79.3

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|++  ++++++++++|.+|+++|.+++.+.+||+|+   +|   +++|+||.+|+.+.+....       .+.+.    
T Consensus       207 im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~-------~~~~~----  269 (326)
T PRK10892        207 IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI-------DLRQA----  269 (326)
T ss_pred             HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC-------CcccC----
Confidence            5776  8999999999999999999999888888873   46   8999999999987543211       11111    


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       +       +.++|.+++.++.+++++.+|+++|.+++++++||+
T Consensus       270 -~-------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  306 (326)
T PRK10892        270 -S-------IADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVA  306 (326)
T ss_pred             -C-------HHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEe
Confidence             2       233456789999999999999999999999999997

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.93  E-value=3.4e-08  Score=100.46  Aligned_cols=172  Identities=18%  Similarity=0.258  Sum_probs=127.6

Q ss_pred             HHHHHHHh--hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCC
Q 016718          144 SRDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG  221 (384)
Q Consensus       144 ~~~~~~~~--l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~  221 (384)
                      +..-+...  |++.++.++|..-.+++.++.+.++.++.+.+.+++.+.+||.+...+.++|++...||+..+.....  
T Consensus       193 E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--  270 (429)
T COG1253         193 EREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--  270 (429)
T ss_pred             HHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc--
Confidence            44445555  46899999999999999999999999999999999999999999667899999999999865532110  


Q ss_pred             CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEE
Q 016718          222 SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL  301 (384)
Q Consensus       222 ~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lv  301 (384)
                       ..        .    ...               . -++++.|++..++.+++..|.+.+.|-.-|+|+   .|   .+.
T Consensus       271 -~~--------~----~~~---------------~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~  315 (429)
T COG1253         271 -DL--------D----LRV---------------L-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVE  315 (429)
T ss_pred             -cc--------c----hhh---------------c-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeE
Confidence             00        0    000               0 137889999999999999999999999999984   36   699


Q ss_pred             EEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHH
Q 016718          302 YLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  367 (384)
Q Consensus       302 Giit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m  367 (384)
                      |+||..||++.+..........  .-...+.+..            ... .-+...+++.+.-+.+
T Consensus       316 GlVTleDIiEeIvGei~de~d~--~~~~~~~~~~------------~~~-~~v~G~~~l~e~~~~l  366 (429)
T COG1253         316 GLVTLEDIIEEIVGEIPDEHDE--DEEEDIIQRD------------DDG-WLVDGRVPLEELEELL  366 (429)
T ss_pred             EEeEHHHHHHHHhCCCcCcccc--cccccceEec------------CCc-EEEeccccHHHHHHHh
Confidence            9999999999999765432110  0001111111            112 5678888888877766

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.93  E-value=1.3e-08  Score=82.45  Aligned_cols=95  Identities=15%  Similarity=0.261  Sum_probs=76.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++++++++.+++..|.+++.+++||+|+   ++   +++|+++..|+++++......      ...     ..+++ 
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~------~~~-----~~~~~-   63 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGAS------ALD-----TPVSE-   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc-----cCHHH-
Confidence            5678999999999999999999999999983   35   899999999999987643211      001     12222 


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            .|.+++.++.+++++.++++.|.+++.+.+||+
T Consensus        64 ------~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv   96 (113)
T cd04623          64 ------IMTRNVITVTPDDTVDEAMALMTERRFRHLPVV   96 (113)
T ss_pred             ------hcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEE
Confidence                  334688999999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.92  E-value=9.7e-09  Score=83.87  Aligned_cols=91  Identities=14%  Similarity=0.123  Sum_probs=73.2

Q ss_pred             ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccc
Q 016718          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (384)
Q Consensus       261 ~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~  340 (384)
                      ++++.+++++.+|++.|.+++.+++||+|+   +|   +++|+||..|+.+....   .      ..+.++.+       
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~---~------~~~~~v~~-------   60 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGPN---D------YETLKVCE-------   60 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhccc---c------ccccChhh-------
Confidence            578999999999999999999999999983   36   89999999999874210   1      11122222       


Q ss_pred             cccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          341 PRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       341 ~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                           +|..++.++.+++++.+|+++|.+++++.+||+
T Consensus        61 -----~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVv   93 (111)
T cd04603          61 -----VYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVV   93 (111)
T ss_pred             -----eeecCCcEECCCCcHHHHHHHHHHcCCCeEEEE
Confidence                 234578899999999999999999999999997

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.91  E-value=1.6e-08  Score=81.94  Aligned_cols=91  Identities=19%  Similarity=0.319  Sum_probs=75.9

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++.+++++.+|+..|.+++..++||+|+   +|   +++|++|..++++.+.....           +     +..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~-----------~-----~~~   59 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDKK-----------S-----VED   59 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCcc-----------C-----HHH
Confidence            56789999999999999999999999999984   36   89999999999987653210           1     122


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .       |.+++.++.+++++.+|++.|.+++.+.+||+
T Consensus        60 ~-------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   92 (110)
T cd04605          60 I-------MTRNVITATPDEPIDVAARKMERHNISALPVV   92 (110)
T ss_pred             h-------cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEE
Confidence            2       23578899999999999999999999999997

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.91  E-value=9.4e-09  Score=84.70  Aligned_cols=103  Identities=14%  Similarity=0.303  Sum_probs=78.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|+..|.+++.+++||+|   + |   +++|++|..++++++........  ......+..+..++++
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   72 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVR--DRHQERRIRNLPVSDI   72 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhccc--chhhhhhhhccCHHHH
Confidence            577899999999999999999999999998   2 6   89999999999988764321110  0011112222333444


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             |..+..++.+++++.+|+++|.+.+++.+||+
T Consensus        73 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv  104 (121)
T cd04633          73 -------MTRPVITIEPDTSVSDVASLMLENNIGGLPVV  104 (121)
T ss_pred             -------ccCCceEECCCCcHHHHHHHHHHcCCCcccEE
Confidence                   34688999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.89  E-value=4e-09  Score=90.54  Aligned_cols=92  Identities=22%  Similarity=0.413  Sum_probs=76.6

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccc
Q 016718          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (384)
Q Consensus       255 ~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (384)
                      .+|++|+++|+|++++.+|+.+|.++|+..+||+++    +   ++||-||..+|++.+......           ++++
T Consensus        69 ~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~e~-----------i~~~  130 (187)
T COG3620          69 TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGMES-----------IRSL  130 (187)
T ss_pred             hhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccccc-----------hhhh
Confidence            379999999999999999999999999999999973    5   899999999999998764321           2223


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCC
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGD  371 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~  371 (384)
                      .       +.++|..+..+|++++++..+-.+|.+|.
T Consensus       131 ~-------vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~  160 (187)
T COG3620         131 R-------VREVMGEPFPTVSPDESLNVISQLLEEHP  160 (187)
T ss_pred             h-------HHHHhcCCCCcCCCCCCHHHHHHHHhhCC
Confidence            2       33456789999999999999988887664

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=1.9e-08  Score=83.00  Aligned_cols=103  Identities=15%  Similarity=0.291  Sum_probs=78.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|+..|.+.+++++||+|+   +|   +++|++|..++++++........  .... +...+..+.+ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~-~~~~~~~v~~-   71 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNG--EESL-TKERDVPVAE-   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhcccccccc--cccc-ccccCcCHHH-
Confidence            5678999999999999999999999999984   36   89999999999998764332110  0000 1111222333 


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            ++.+++.++.+++++.+|+++|.+.+.+++||+
T Consensus        72 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv  104 (122)
T cd04803          72 ------VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVV  104 (122)
T ss_pred             ------hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEE
Confidence                  345688999999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.87  E-value=6.7e-09  Score=74.74  Aligned_cols=56  Identities=20%  Similarity=0.478  Sum_probs=50.7

Q ss_pred             ccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHH
Q 016718          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (384)
Q Consensus       157 ~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~  215 (384)
                      +.|+|  +.+++++++++++.+|++.|.+++++.+||+|+ +++++|+||.+||++++.
T Consensus         1 v~~~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIM--TPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHS--BSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHH
T ss_pred             CeECC--cCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhh
Confidence            35778  558999999999999999999999999999996 699999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.87  E-value=6.6e-09  Score=105.10  Aligned_cols=98  Identities=14%  Similarity=0.233  Sum_probs=84.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +++.+.++|+|.+|+.+|++.|.++|+..+.|++.   ++   .++||||.+|+.+++....+.       .+     . 
T Consensus       154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~-----~-  214 (610)
T COG2905         154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KT-----Q-  214 (610)
T ss_pred             HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------cc-----c-
Confidence            46889999999999999999999999999999983   45   799999999999998764322       11     1 


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            +|+++|..|+++|...+.+.+|+-+|..++|.++||.
T Consensus       215 ------~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~  251 (610)
T COG2905         215 ------KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT  251 (610)
T ss_pred             ------chhhhhccCceeecCcchHHHHHHHHHHhCCceeeee
Confidence                  3445567899999999999999999999999999996

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=1.8e-08  Score=84.07  Aligned_cols=105  Identities=12%  Similarity=0.160  Sum_probs=76.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc--cccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS--IQLG  337 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~--l~ig  337 (384)
                      .++++.+++++.+|+..|.++++.++||+|+   +|   +++|++|..|+++.........    .....+..+  ..+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~   71 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFT   71 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcc
Confidence            4678999999999999999999999999984   36   8999999999999764322110    000000000  0001


Q ss_pred             ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +    ....+..++.++.+++++.+|+++|.+++++.+||+
T Consensus        72 ~----~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv  108 (126)
T cd04642          72 D----SDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVV  108 (126)
T ss_pred             c----ccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEE
Confidence            1    112345789999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.86  E-value=2.7e-08  Score=81.30  Aligned_cols=94  Identities=15%  Similarity=0.161  Sum_probs=73.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcC-CCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~-i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++.++++++++.+|++.|.+++ .+++||+|+   +|   +++|++|..|+++......         .+.++.+     
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~-----   61 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTVIQ-----   61 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccchhh-----
Confidence            5778999999999999998775 899999984   35   7999999999998764221         1122222     


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .+..     ..++.++.+++++.+|++.|.+++++.+||+
T Consensus        62 ~~~~-----~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv   96 (114)
T cd04801          62 VMTP-----AAKLVTVLSEESLAEVLKLLEEQGLDELAVV   96 (114)
T ss_pred             hhcc-----cccceEECCCCcHHHHHHHHHHCCCCeeEEE
Confidence            2210     0246799999999999999999999999997

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.85  E-value=1.8e-08  Score=82.05  Aligned_cols=96  Identities=18%  Similarity=0.200  Sum_probs=76.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|++.|.++++.++||+|+   +|   +++|+++..|+++.+.......     ....+     +.  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~-----v~--   63 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGVAT-----VR--   63 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCCcc-----HH--
Confidence            5678999999999999999999999999983   35   8999999999999876532110     01111     22  


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                           +.|..+..++.+++++.+|++.|.+++.+++||+
T Consensus        64 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   97 (114)
T cd04629          64 -----DIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVV   97 (114)
T ss_pred             -----HHhccCceEECCCCcHHHHHHHHHHhCCCccCEE
Confidence                 2234578899999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.85  E-value=3.4e-08  Score=80.20  Aligned_cols=93  Identities=17%  Similarity=0.335  Sum_probs=75.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++.+++++.+|+..|.+++.+++||+|+   +|   +++|++|..|+++++.....        .+.+     +.+ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~~-----v~~-   61 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDTP-----VSE-   61 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------CccC-----HHH-
Confidence            4678999999999999999999999999984   36   89999999999988764321        1111     222 


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            .|.+++.++.+++++.++++.|.+++++.+||+
T Consensus        62 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv   94 (112)
T cd04624          62 ------IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVV   94 (112)
T ss_pred             ------hccCCCEEECCCCcHHHHHHHHHHcCccEEEEE
Confidence                  234678999999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.85  E-value=1.8e-08  Score=80.52  Aligned_cols=78  Identities=6%  Similarity=0.072  Sum_probs=69.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|+..|.++++..+||+|.   +|   +++|++|.+|+++..                          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~--------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS--------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence            5788999999999999999999999999983   36   899999999998732                          


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                                .+.++.+++++.+|+++|.+++++.+||+-
T Consensus        50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~   79 (96)
T cd04614          50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIIN   79 (96)
T ss_pred             ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEEC
Confidence                      135899999999999999999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.84  E-value=3.2e-08  Score=80.71  Aligned_cols=93  Identities=20%  Similarity=0.244  Sum_probs=75.1

Q ss_pred             ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccc
Q 016718          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (384)
Q Consensus       261 ~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~  340 (384)
                      .+++.+++++.+|+..|.+++.+.+||+|+   +|   +++|++|.+|+++.+.....        .+.++.     +  
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~-----~--   62 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDDPVS-----E--   62 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCCCHH-----H--
Confidence            467899999999999999999999999983   36   89999999999987653211        111222     2  


Q ss_pred             cccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          341 PRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       341 ~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                           +|..++.++.+++++.+|+++|.+++.+.+||+-
T Consensus        63 -----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~   96 (113)
T cd04607          63 -----VMNRNPITAKVGSSREEILALMRERSIRHLPILD   96 (113)
T ss_pred             -----hhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC
Confidence                 2345788999999999999999999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.84  E-value=3.1e-08  Score=84.30  Aligned_cols=113  Identities=11%  Similarity=0.104  Sum_probs=78.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhccc-CCCC-ccccc--ccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-SSSS-LPILQ--QPVSSIQ  335 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~-~~~~-~~~~~--~~v~~l~  335 (384)
                      ++.++++++++.+|+..|.+++...+||+|+   +|   +++|++|..|+++++...... .+.. ..+..  ..-.+..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY   75 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence            3578999999999999999999999999983   36   899999999999987532111 0000 00000  0000000


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .......+.++|..++.++.+++++.+|++.|.+++++++||+
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv  118 (135)
T cd04621          76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVV  118 (135)
T ss_pred             cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence            0001112344556788999999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.83  E-value=4e-08  Score=79.64  Aligned_cols=93  Identities=15%  Similarity=0.240  Sum_probs=75.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++++++++.+|+..|.+++.+++||+|+    |   +++|+++..|+++++...-  .     ..+.     .+.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~--~-----~~~~-----~i~~~   62 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEG--L-----DPDT-----PVSEV   62 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccC--C-----CccC-----CHHHH
Confidence            5678999999999999999999999999982    5   8999999999998765321  0     0111     22222


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             |.++++++.+++++.+|++.|.+++.+++||+
T Consensus        63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   94 (111)
T cd04800          63 -------MTAPPITIPPDATVFEALLLMLERGIHHLPVV   94 (111)
T ss_pred             -------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEe
Confidence                   34688999999999999999999999999996

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.83  E-value=1.2e-08  Score=73.35  Aligned_cols=53  Identities=26%  Similarity=0.458  Sum_probs=49.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                      +|+++++++++++++.+|++.|.+++++++||+|+   +|   +++|+||.+||++++.
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE---DG---KLVGIISRSDLLKALL   56 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST---TS---BEEEEEEHHHHHHHHH
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---EEEEEEEHHHHHhhhh
Confidence            37889999999999999999999999999999984   36   8999999999999986

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.83  E-value=4.4e-08  Score=80.14  Aligned_cols=94  Identities=16%  Similarity=0.271  Sum_probs=75.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++.+++++.++++.|.+.+.+++||+|+   +|   +++|+++.+|+++++......       ...     .+.. 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~-----~~~~-   62 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPS-----AVDE-   62 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccc-----cHHH-
Confidence            4568899999999999999999999999984   36   899999999999877532110       001     1122 


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            .|.+++.++.+++++.+|+++|.+++...+||+
T Consensus        63 ------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vv   95 (115)
T cd04593          63 ------VATPPLLTVHPDEPLAHALDRMASRGLRQLPVV   95 (115)
T ss_pred             ------hccCCceEECCCCCHHHHHHHHHHcCCceeeEE
Confidence                  234688999999999999999999999999997

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.83  E-value=2.3e-08  Score=82.56  Aligned_cols=103  Identities=19%  Similarity=0.212  Sum_probs=78.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++++++++.+|++.|.++++.++||+|   + |   +++|++|..|+++++...+.....  ..     .+  .+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~-----~~--~~~~   65 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAGE--TE-----KD--LATL   65 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhccccc--hH-----HH--HHHH
Confidence            568899999999999999999999999998   2 6   899999999999987643321100  00     00  0011


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ...++++|.++++++.+++++.+|++.|.+++.+.+||+
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv  104 (122)
T cd04637          66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVV  104 (122)
T ss_pred             HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEE
Confidence            112334456789999999999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.82  E-value=2.3e-08  Score=84.48  Aligned_cols=112  Identities=15%  Similarity=0.248  Sum_probs=78.5

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccc--cccc--
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP--VSSI--  334 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~--v~~l--  334 (384)
                      +++.++.+++++.+|++.|.+++.+++||+|+   +|   +++|+|+..|+++++...+....  ..+....  ....  
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~--~~~~~~~~~~~~~~~   73 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRR--ARWLDLLAGAEELAA   73 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchh--hhHHHHhcchHHHHH
Confidence            56789999999999999999999999999983   35   89999999999987654321000  0000000  0000  


Q ss_pred             cc-cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QL-GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~i-g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .. -.....+.++|.+++.++.+++++.+|++.|.+++.+.+||+
T Consensus        74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vv  118 (135)
T cd04586          74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVV  118 (135)
T ss_pred             HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEe
Confidence            00 000001233445688999999999999999999999999996

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.82  E-value=3.3e-08  Score=80.10  Aligned_cols=92  Identities=22%  Similarity=0.386  Sum_probs=75.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|++.|.+.+..++||+|+   +|   +++|+++..|+++++.....         +.++.+      
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~------   60 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGGP---------DAPVRG------   60 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcCC---------CCcHHH------
Confidence            4678999999999999999999999999983   36   89999999999988764211         112222      


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            +|..++.++.+++++.+|++.|.+++..++||+
T Consensus        61 ------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv   93 (111)
T cd04639          61 ------VMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVV   93 (111)
T ss_pred             ------HhcCCCcEECCCCcHHHHHHHHHhcCCceeeEE
Confidence                  234578899999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.82  E-value=3.3e-08  Score=80.17  Aligned_cols=94  Identities=18%  Similarity=0.236  Sum_probs=76.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++.+++++.++++.|.++++.++||+|+   +|   +++|+++..|+.+++.... .       .+    ...    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~-~-------~~----~~~----   59 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPS-L-------YD----LVV----   59 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhccc-c-------cc----cEE----
Confidence            5678999999999999999999999999984   35   7999999999998764311 0       00    011    


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                         +.++|.+++.++.+++++.++++.|.+.+.+++||+
T Consensus        60 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv   95 (114)
T cd04613          60 ---ASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVV   95 (114)
T ss_pred             ---HHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEE
Confidence               223345688999999999999999999999999997

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.81  E-value=4.3e-08  Score=79.45  Aligned_cols=92  Identities=14%  Similarity=0.211  Sum_probs=74.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|+..|.+++...+||+++  ++|   +++|++|..|+++++.....      .   .++.     .+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~------~---~~~~-----~~   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE------D---LDLR-----DL   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC------c---CCHH-----HH
Confidence            4688999999999999999999999999984  215   89999999999998753210      0   1111     22


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +        +++.++.+++++.+|++.|.+++.+.+||+
T Consensus        63 ~--------~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   93 (111)
T cd04590          63 L--------RPPLFVPESTPLDDLLEEMRKERSHMAIVV   93 (111)
T ss_pred             h--------cCCeecCCCCcHHHHHHHHHhcCCcEEEEE
Confidence            2        367899999999999999999999999986

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.81  E-value=6.6e-08  Score=78.46  Aligned_cols=94  Identities=16%  Similarity=0.278  Sum_probs=75.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++++++++.++++.|.+.+.+.+||+|+    +   +++|+++..|+++.+......      ..+.+     +.+ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~~-----~~~-   62 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREVP-----VGE-   62 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccCC-----HHH-
Confidence            5678999999999999999999999999983    4   799999999999977543100      01111     222 


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            +|.+++.++.+++++.++++.|.+++..++||+
T Consensus        63 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   95 (112)
T cd04802          63 ------VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVV   95 (112)
T ss_pred             ------hcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEe
Confidence                  234578899999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.80  E-value=3.4e-08  Score=80.62  Aligned_cols=97  Identities=13%  Similarity=0.190  Sum_probs=73.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      .++++++++++.+|+++|.+++++++||+|+   +|   +++|+++.+|+++++........  ..+...+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~---------   64 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENLDL--ERLVDLK---------   64 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCc---------
Confidence            4688999999999999999999999999983   36   89999999999998764321100  0000111         


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                         ++++|.+++.++.+++++.+|++.|.+++  .+||+
T Consensus        65 ---v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv   98 (116)
T cd04643          65 ---VIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVV   98 (116)
T ss_pred             ---HHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEE
Confidence               22344568899999999999999998865  48875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.80  E-value=6.3e-08  Score=78.61  Aligned_cols=94  Identities=15%  Similarity=0.129  Sum_probs=75.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.++++.|.+++.+++||+|   + |   +++|+||..|+++.+......      ....++.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~-------   61 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGLD------PESTLVE-------   61 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCCC------cCcCCHH-------
Confidence            567899999999999999999999999997   3 5   899999999999765532110      0112222       


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                           ++|.++..++.+++++.+|++.|.+++..++||+
T Consensus        62 -----~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv   95 (113)
T cd04587          62 -----RVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVV   95 (113)
T ss_pred             -----HhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEE
Confidence                 2334678899999999999999999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.80  E-value=6.3e-08  Score=78.42  Aligned_cols=92  Identities=16%  Similarity=0.307  Sum_probs=75.4

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++.+++++.+|+..|.+++..++||+|   + |   +++|+++..|+++.+....         ...+     +.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~-----~~~   60 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAP-----VKD   60 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCc-----HHH
Confidence            4678999999999999999999999999998   3 5   8999999999988763221         1122     222


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +       |.++..++.+++++.+|+.+|.+++.+.+||+
T Consensus        61 ~-------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~   93 (110)
T cd04595          61 Y-------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVV   93 (110)
T ss_pred             H-------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEE
Confidence            2       34678899999999999999999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.79  E-value=6.8e-08  Score=78.13  Aligned_cols=91  Identities=19%  Similarity=0.330  Sum_probs=75.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++++++++.+|++.|.+++++++||++   + |   +++|+++..|+++++.....         ..     .+.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~-----~v~~~   60 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LA-----KVKDV   60 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------cc-----CHHHH
Confidence            578899999999999999999999999997   3 6   89999999999987543211         01     12222


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             +..++.++.+++++.++++.|.+.++..+||+
T Consensus        61 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~   92 (110)
T cd04588          61 -------MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVT   92 (110)
T ss_pred             -------hcCCceEECCCCCHHHHHHHHHhcCCCEEEEE
Confidence                   34688999999999999999999999999997

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=4.4e-08  Score=81.12  Aligned_cols=102  Identities=19%  Similarity=0.313  Sum_probs=77.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCC----cccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LPILQQPVSSIQ  335 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~----~~~~~~~v~~l~  335 (384)
                      +++++.+++++.+|+.+|.+++...+||+|+  ++|   +++|+|+..|+++++..........    ....+.+     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~-----   71 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEP-----   71 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccccccccchhhhcC-----
Confidence            5678999999999999999999999999984  226   8999999999998876432110000    0001111     


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             +.+.+.+++.++.+++++.++++.|.+.+.+.+||+
T Consensus        72 -------~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~  107 (125)
T cd04631          72 -------VRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVV  107 (125)
T ss_pred             -------HHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEE
Confidence                   223345688999999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.79  E-value=5.3e-08  Score=78.25  Aligned_cols=87  Identities=10%  Similarity=0.116  Sum_probs=72.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++++++++.+|+..|.+++.+++||+|+   +|   +++|++|..|+++....              +     ++++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~~--------------~-----~~~~   56 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASGG--------------C-----CGDH   56 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhccc--------------c-----hhhh
Confidence            4678999999999999999999999999973   36   89999999999875210              1     1222


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +       .++..++.+++++.+|++.|.+++++.+||+
T Consensus        57 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv   88 (106)
T cd04582          57 A-------EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCV   88 (106)
T ss_pred             c-------ccCCEEECCCCCHHHHHHHHHHCCCCeeeEE
Confidence            2       3466889999999999999999999999997

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=4.5e-08  Score=82.37  Aligned_cols=108  Identities=11%  Similarity=0.232  Sum_probs=78.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccc------cccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL------QQPVSS  333 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~------~~~v~~  333 (384)
                      +++++++++++.+|++.|.+++++++||+|+   +|   +++|+++..|+++++......... ....      +.....
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   74 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYV-TLLYSVIFLDESKIKK   74 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccc-cccccccccchHHHHH
Confidence            4678999999999999999999999999983   35   899999999999988653211000 0000      000000


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +...    .++.+|.+++.++.+++++.+++++|.+++.+.+||+
T Consensus        75 ~~~~----~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~  115 (132)
T cd04636          75 LLGK----KVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVV  115 (132)
T ss_pred             HcCC----CHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEE
Confidence            0000    1233455788999999999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.79  E-value=3.2e-08  Score=96.65  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=80.0

Q ss_pred             CCCCC--ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~~~--~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|.++  ++++++++++.+|++.|.+++...+||+|+   +|   +++|+||..|+.+.+....        ..+.+   
T Consensus       202 im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~--------~~~~~---  264 (321)
T PRK11543        202 LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGG--------ALTTP---  264 (321)
T ss_pred             HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCC--------CcCCc---
Confidence            47777  999999999999999999999999999983   46   8999999999998664311        01111   


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                               +.++|.+++.++.+++++.+|++.|.++++..+||+
T Consensus       265 ---------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  300 (321)
T PRK11543        265 ---------VNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVV  300 (321)
T ss_pred             ---------HHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence                     223456789999999999999999999999999997

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.77  E-value=7.1e-08  Score=78.27  Aligned_cols=93  Identities=11%  Similarity=0.143  Sum_probs=75.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++++++++.+|+..|.+++.+++||+|+   +|   +++|+++..|++++.....        ..+.++.+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~~------   61 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEKKVFN------   61 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccCcHHH------
Confidence            4678999999999999999999999999983   36   8999999999997654211        01222222      


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            .|.+++.++.+++++.+|++.|.++++..+||+
T Consensus        62 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   94 (111)
T cd04626          62 ------IVSQDVFYVNEEDTIDEALDIMREKQIGRLPVV   94 (111)
T ss_pred             ------HhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEe
Confidence                  234688999999999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.76  E-value=9e-08  Score=77.34  Aligned_cols=92  Identities=20%  Similarity=0.302  Sum_probs=75.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++.+++++.+|++.|.+++.+.+||+|+    |   +++|+++.+|+++++.....        ..     ..++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~-----~~v~~~   61 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQ-----TPVGEV   61 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CC-----cCHHHh
Confidence            4678999999999999999999999999972    6   89999999999988754221        11     223333


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             |.++++++.+++++.++++.|.+.+.+.+||+
T Consensus        62 -------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv   93 (111)
T cd04611          62 -------MSSPLLTVPADTSLYDARQLMREHGIRHLVVV   93 (111)
T ss_pred             -------cCCCceEECCCCCHHHHHHHHHHcCCeEEEEE
Confidence                   34688999999999999999999999999986

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.76  E-value=7e-08  Score=79.14  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=77.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++.+++++.+|+.+|.+.+..++||+|+    |   +++|+++..|+++++......... .. ......+..    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~----   68 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLDI-WE-LYYLLSKIK----   68 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhcccccccc-hh-hhhhhcccC----
Confidence            4678999999999999999999999999982    6   899999999999887543221110 00 000001111    


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                         +.++|.+++.++.+++++.+++..|.+++.+.+||+
T Consensus        69 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv  104 (122)
T cd04585          69 ---VSDIMTRDPITVSPDASVEEAAELMLERKISGLPVV  104 (122)
T ss_pred             ---HHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEE
Confidence               233445788999999999999999999999999997

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.76  E-value=3.4e-08  Score=82.76  Aligned_cols=95  Identities=16%  Similarity=0.229  Sum_probs=73.8

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++.+++++.+|++.|.++++.++||+|+   +|   +++|++|..|+++.+......       .+.+        
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~~~--------   60 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PSDP--------   60 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CCCc--------
Confidence            35789999999999999999999999999983   35   799999999999877643211       1112        


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHH---------hCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLV---------QGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~---------~~~is~lPV~  378 (384)
                          ++++|.+++.++.+++++.+|.++|.         +.+..++||+
T Consensus        61 ----v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~  105 (124)
T cd04608          61 ----VSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGK  105 (124)
T ss_pred             ----HHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccc
Confidence                33445689999999999999999653         3366777765

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.75  E-value=4.8e-08  Score=80.54  Aligned_cols=103  Identities=18%  Similarity=0.265  Sum_probs=76.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|++.|.+++.+++||+|+   +|   +++|+++..|+++.........   ...........     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~---~~~~~~~~~~~-----   67 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVE---DQQRTQTKASP-----   67 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhcccccccc---chhhhhhhccC-----
Confidence            5788999999999999999999999999983   36   8999999999998643211000   00000000011     


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                        .+.++|.+++.++.+++++.++++.|.+++.+++||+
T Consensus        68 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv  104 (122)
T cd04635          68 --TVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVV  104 (122)
T ss_pred             --cHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEE
Confidence              1223445688999999999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.74  E-value=1.2e-07  Score=76.42  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=73.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++++++++.+|+..|.+++..++||+|+   +|   +++|+++..|+++.....            .++     ..+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~------------~~v-----~~~   59 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKEA------------KSL-----EDI   59 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhcC------------CcH-----hHh
Confidence            4678999999999999999999999999983   36   899999999998865211            111     122


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             |.....++.+++++.+|+..|.+++.+++||+
T Consensus        60 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv   91 (109)
T cd04583          60 -------MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVV   91 (109)
T ss_pred             -------hcCCceEECCCCcHHHHHHHHHHcCCceeeEE
Confidence                   23577899999999999999999999999996

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=1.2e-07  Score=76.97  Aligned_cols=94  Identities=16%  Similarity=0.299  Sum_probs=74.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      .+.++.+++++.+|++.|.+++.+.++|.+   + |   +++|++|.+|+++++......      ....++.     + 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~-----~-   62 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME---R-G---ELVGLLTFREVLQAMAQHGAG------VLDTTVR-----A-   62 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHHHHHHHhcCCc------hhcCCHH-----H-
Confidence            367899999999999999988988888775   2 6   899999999999987642111      0111222     2 


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            +|..++.++.+++++.+|+++|.+++..++||+
T Consensus        63 ------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv   95 (112)
T cd04625          63 ------IMNPEPIVASPDDSIDEVRRLMVERHLRYLPVL   95 (112)
T ss_pred             ------HhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEE
Confidence                  234578899999999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=1e-07  Score=77.44  Aligned_cols=94  Identities=9%  Similarity=0.116  Sum_probs=74.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +..++.+++++.+|++.|.+++.+++||+|+   +|   +++|++|..|+++.+.... .      +.+.++     .++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-~------~~~~~i-----~~~   63 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-E------LKDAKV-----REV   63 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-h------hcCCcH-----HHh
Confidence            3578899999999999999999999999984   35   7999999999998654321 0      111122     222


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             |..++.++.+++++.++++.|.+++.+.+||+
T Consensus        64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   95 (113)
T cd04615          64 -------MNSPVITIDANDSIAKARWLMSNNNISRLPVL   95 (113)
T ss_pred             -------ccCCceEECCCCcHHHHHHHHHHcCCCeeeEE
Confidence                   34578999999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.74  E-value=1.5e-07  Score=95.32  Aligned_cols=131  Identities=21%  Similarity=0.337  Sum_probs=108.1

Q ss_pred             HHHHHHHHhhh--hccccccCCCCCcEEEEecCccHHHHHHHHHH-----cCCCeeeeeeCCCCeEEEEeehHHHHHHHH
Q 016718          143 LSRDRISSFLS--THTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (384)
Q Consensus       143 ~~~~~~~~~l~--~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~-----~~i~~lPV~D~~~~~~vGilT~~Dli~~l~  215 (384)
                      .++..++..++  ..++..+|  ..+.+++..+.|+.+|+..+++     ..+..+.|+|. +++++|++|.++++..  
T Consensus       118 ~~r~~v~~~l~y~e~taG~~M--t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~a--  192 (451)
T COG2239         118 EERARVRQLLSYPEDTAGRIM--TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLTA--  192 (451)
T ss_pred             HHHHHHHHhcCCChhhhhccc--eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhcC--
Confidence            56777777775  78899999  6799999999999999999994     45688999996 6799999999999621  


Q ss_pred             HhccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCC
Q 016718          216 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG  295 (384)
Q Consensus       216 ~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g  295 (384)
                          ++    .+        .+++                +|...++++.+++...+++++|.+|++-.+||+|+   ++
T Consensus       193 ----~~----~~--------~i~~----------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~---~~  237 (451)
T COG2239         193 ----EP----DE--------LLKD----------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE---DN  237 (451)
T ss_pred             ----Cc----Hh--------HHHH----------------HhcccceeecccCCHHHHHHHHHHhCCeecceECC---CC
Confidence                10    00        1122                25667999999999999999999999999999984   46


Q ss_pred             CcccEEEEeeHHHHHHHHHhh
Q 016718          296 SCQEILYLASLSDILKCICRH  316 (384)
Q Consensus       296 ~~~~lvGiit~~dil~~l~~~  316 (384)
                         +++|+||..|++..+-..
T Consensus       238 ---~LiG~itiDDiidvi~eE  255 (451)
T COG2239         238 ---RLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             ---ceeeeeeHHHHHHHHHHH
Confidence               899999999999988754

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=9.8e-08  Score=79.69  Aligned_cols=106  Identities=12%  Similarity=0.226  Sum_probs=77.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCC-CCc-ccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS-SSL-PILQQPVSSIQLG  337 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~-~~~-~~~~~~v~~l~ig  337 (384)
                      +++++.+++++.+|+++|.+.+++.+||+|+   +|   +++|++|..|+++++........ ... ....+ ..+..  
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~--   72 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKER-MLDLP--   72 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhh-hccCc--
Confidence            4678999999999999999999999999984   36   89999999999987643210000 000 00000 00011  


Q ss_pred             ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                           +..+|.++++++.+++++.+|++.|.++++..+||+.
T Consensus        73 -----~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~  109 (128)
T cd04632          73 -----VYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVT  109 (128)
T ss_pred             -----HHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence                 2234457899999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.74  E-value=5.1e-08  Score=92.64  Aligned_cols=97  Identities=14%  Similarity=0.132  Sum_probs=79.7

Q ss_pred             CCCCC-ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccc
Q 016718          256 PCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (384)
Q Consensus       256 ~m~~~-~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (384)
                      +|.++ +.++.+++++.+|++.|.+.++.++||+|+   +|   +++|++|..|+++++....        ..+.++.  
T Consensus       160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~~v~--  223 (268)
T TIGR00393       160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKSEVR--  223 (268)
T ss_pred             HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccCcHH--
Confidence            47777 899999999999999999999999999983   36   8999999999998654211        0122222  


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                                ++|.+++.++.+++++.+|+++|.++++..+||+
T Consensus       224 ----------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  257 (268)
T TIGR00393       224 ----------DFMTLGPKTFKLDALLLEALEFLERRKITSLVVV  257 (268)
T ss_pred             ----------HhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEE
Confidence                      3345788999999999999999999999999996

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.74  E-value=1.4e-07  Score=76.59  Aligned_cols=93  Identities=14%  Similarity=0.143  Sum_probs=74.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++++++++.+|+..|.+++...+||+|   + |   +++|+++..|+++++...-.       ....     .+.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~-----~i~~~   62 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDGL-------PSST-----PVGEI   62 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCCC-------CCCC-----CHHHH
Confidence            457899999999999999999999999997   3 5   79999999999987643110       0111     22223


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             |.+++.++.+++++.++++.|.+++...+||+
T Consensus        63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   94 (111)
T cd04589          63 -------ATFPLITVDPDDFLFNALLLMTRHRIHRVVVR   94 (111)
T ss_pred             -------hCCCcEEECCCCcHHHHHHHHHHhCccEEEEe
Confidence                   34688999999999999999999999999996

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.73  E-value=9.7e-08  Score=77.53  Aligned_cols=94  Identities=17%  Similarity=0.258  Sum_probs=75.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++.+++++.++++.|.+.+..++||+|+   +|   +++|+++..++++.+......       ...     .++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~~-----~v~~~   64 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LTL-----PVADV   64 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------ccC-----CHHHh
Confidence            3567899999999999999889999999984   36   899999999999987643211       011     23333


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             |..++.++.+++++.++++.|.+++...+||+
T Consensus        65 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv   96 (114)
T cd04604          65 -------MTRNPKTIDPDALAAEALELMEENKITALPVV   96 (114)
T ss_pred             -------hccCCeEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence                   34678899999999999999999999999996

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.72  E-value=1.7e-07  Score=96.23  Aligned_cols=140  Identities=11%  Similarity=0.082  Sum_probs=99.1

Q ss_pred             CeeeeeeCCCCeEEEEeehHHHHHHHHHhccCC---CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeC
Q 016718          189 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG  265 (384)
Q Consensus       189 ~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~  265 (384)
                      -.+|++-+    ....||..++...|.+...-+   .++.        ...+.+..+.+.       ...+|.++++++.
T Consensus        43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~--------~~~q~~~l~~VK-------v~~iMi~~pvtv~  103 (479)
T PRK07807         43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIP--------IDVVAEVVAWVK-------SRDLVFDTPVTLS  103 (479)
T ss_pred             cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCC--------HHHHHHHHhhcc-------cccccccCCeEEC
Confidence            34788864    234588888887776554110   1221        112222222221       1125788999999


Q ss_pred             CCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccccccccc
Q 016718          266 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE  345 (384)
Q Consensus       266 ~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~  345 (384)
                      +++++.+|+++|.++++..+||+|+   ++   +++||||.+|+...     ..        ..++.            +
T Consensus       104 ~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~-----~~--------~~~V~------------d  152 (479)
T PRK07807        104 PDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV-----DR--------FTQVR------------D  152 (479)
T ss_pred             CCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC-----cc--------CCCHH------------H
Confidence            9999999999999999999999983   46   89999999998321     00        11222            3


Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          346 ANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       346 ~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +|.++++++++++++.+|+++|.++++..+||+
T Consensus       153 iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVV  185 (479)
T PRK07807        153 VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVV  185 (479)
T ss_pred             hccCCceEECCCCcHHHHHHHHHhcCCCEEEEE
Confidence            345789999999999999999999999999997

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.71  E-value=1.3e-07  Score=77.14  Aligned_cols=93  Identities=16%  Similarity=0.232  Sum_probs=71.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhcC-CCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~-i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      +++++.+++++.+|++.|.+++ ...+||.|   + |   +++|+++..|+++++.....       ..+.++     .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i-----~~   62 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE---K-G---RLLGIFTERDIVRLTAIGKD-------LSDLPI-----GE   62 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC---C-C---cEEEEEeHHHHHHHHhcCCC-------ccccCH-----HH
Confidence            4568899999999999999888 66777776   2 5   89999999999987653211       011122     22


Q ss_pred             cccccccCCCCCceEeCCC--CCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d--~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .       |.+++.++.++  +++.+|+++|.+++.+.+||+
T Consensus        63 ~-------~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv   97 (115)
T cd04620          63 V-------MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVL   97 (115)
T ss_pred             h-------cCCCcEEEecccccCHHHHHHHHHHhCCceEEEE
Confidence            2       34578899887  799999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.71  E-value=1.5e-07  Score=80.72  Aligned_cols=110  Identities=21%  Similarity=0.382  Sum_probs=81.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccC----CCCcccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS----SSSLPILQQPVSSIQ  335 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~----~~~~~~~~~~v~~l~  335 (384)
                      +++++++++++.++++.|.++++..+||+|   + |   +++|++|..|+++++.......    ++....+..++.++ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLD---G-G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF-   73 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeE---C-C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence            567999999999999999999999999998   2 5   8999999999999876432100    00011222333221 


Q ss_pred             cccc-----------ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~-----------~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       ..|           ...+.++|.+++.++.+++++.+|+..|.+++.+++||+
T Consensus        74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv  126 (143)
T cd04634          74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVV  126 (143)
T ss_pred             -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence             111           012345667889999999999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.70  E-value=1.6e-07  Score=75.82  Aligned_cols=92  Identities=16%  Similarity=0.251  Sum_probs=74.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+++..|.+.+.+++||+|   + |   +++|+++..|+++........             ++.+.  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------------~~~~~--   59 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD---D-G---RLVGIVTLADIRRVPAEGREA-------------TVLVG--   59 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEee---C-C---eEEEEEEHHHHHHHHhcCccc-------------ccCHH--
Confidence            567899999999999999999999999998   3 5   899999999999866432100             01111  


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                           ..|.+++.++.+++++.++++.|.+++.+++||+
T Consensus        60 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~   93 (111)
T cd04612          60 -----DVMTRDPVTASPDETLRDALKRMAERDIGRLPVV   93 (111)
T ss_pred             -----HhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEE
Confidence                 2234688999999999999999999999999996

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.68  E-value=2.3e-07  Score=75.22  Aligned_cols=93  Identities=14%  Similarity=0.218  Sum_probs=73.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH-HHHhhcccCCCCccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~-~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      +++++.+++++.+|++.|.+++.+.+||+|   + |   +++|++|..|++. .+.....       ....++.      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~~~~-------~~~~~~~------   61 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAEGRD-------PDTTTVG------   61 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhccCC-------cccCCHH------
Confidence            567899999999999999999999999997   3 6   8999999999974 3322110       0111122      


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            ++|.+...++.+++++.++++.|.+.+.+++||+
T Consensus        62 ------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~   95 (113)
T cd04622          62 ------DVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVV   95 (113)
T ss_pred             ------HhccCCccEECCCCCHHHHHHHHHHcCCCeeeEE
Confidence                  2234678899999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.67  E-value=2.8e-07  Score=73.60  Aligned_cols=94  Identities=17%  Similarity=0.340  Sum_probs=76.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++.+++++.++++.|.+++.+++||+|.   ++   +++|+++.+|+++.+.........            .+.  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~~------------~~~--   61 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPLV------------TVG--   61 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCccc------------cHH--
Confidence            4678999999999999999999999999983   35   899999999999988754322100            011  


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                           +.|..+..++.+++++.+|++.|.+.+.+.+||+
T Consensus        62 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~   95 (113)
T cd02205          62 -----DVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV   95 (113)
T ss_pred             -----HHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEE
Confidence                 2234578899999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.67  E-value=9.4e-08  Score=73.66  Aligned_cols=70  Identities=33%  Similarity=0.527  Sum_probs=58.4

Q ss_pred             eEEEEEeeC-CCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCC-ceEEEEEEEcCEeecCCCCCeeeCC
Q 016718           21 VPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDGEWRHDENQPHVSGN   92 (384)
Q Consensus        21 ~~v~f~w~~-~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~-G~y~YkFiVDG~w~~d~~~p~~~d~   92 (384)
                      ..++|++.. .+++|.|.++|++|....+|.+..  +|.|++.+.+.. +.|.|+|.|+|.|.+++.++...+.
T Consensus         4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~--~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~   75 (83)
T cd02688           4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVE--DGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEG   75 (83)
T ss_pred             ccEEEEEECCCCCEEEEEEEECCCCCcccCEECC--CceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcC
Confidence            467888766 579999999999976678998764  699999999988 9999999999999988887554443

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.66  E-value=1.3e-07  Score=76.44  Aligned_cols=89  Identities=8%  Similarity=0.099  Sum_probs=73.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++.+++++.+|+..|.+++.+.+||+|+   +|   +++|+++..|++.+.     .        +.++.     ++
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~--------~~~v~-----~~   58 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-----P--------DTTIE-----KV   58 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-----c--------cccHH-----HH
Confidence            5789999999999999999999999999983   46   899999999997531     0        11222     22


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                             |..++.++.+++++.+|+++|.+++...+||+-
T Consensus        59 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~   91 (108)
T cd04596          59 -------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVD   91 (108)
T ss_pred             -------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence                   235788999999999999999999999999973

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.65  E-value=2.2e-07  Score=76.33  Aligned_cols=103  Identities=13%  Similarity=0.212  Sum_probs=76.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      ++.++++++++.+|+..|.+.+..++||+|+   +|   +++|+++..++++.....+..... ...  .......    
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~~-~~~--~~~~~~~----   68 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLSE-HEL--YLLLKMP----   68 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccchh-hhh--hhhcCcC----
Confidence            5678999999999999999999999999984   36   899999999999876543221100 000  0000011    


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                         +.+.|..+++++.+++++.+++++|.+++.+++||+
T Consensus        69 ---v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~  104 (121)
T cd04584          69 ---VKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVV  104 (121)
T ss_pred             ---HHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEe
Confidence               122345688999999999999999999999999996

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.63  E-value=2.3e-07  Score=74.27  Aligned_cols=87  Identities=18%  Similarity=0.294  Sum_probs=71.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.++++.|.+++.+.+||+|+    |   +++|+++..|++++..             +.++.     + 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~~-------------~~~~~-----~-   55 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAHP-------------NRLVA-----D-   55 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhcccc-------------cCCHH-----H-
Confidence            5678999999999999999999999999972    5   8999999999986320             11111     2 


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            .|.+++.++.+++++.+|++.|.+++.+++||+
T Consensus        56 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   88 (105)
T cd04599          56 ------AMTREVVTISPEASLLEAKRLMEEKKIERLPVL   88 (105)
T ss_pred             ------HccCCCEEECCCCCHHHHHHHHHHcCCCEeeEE
Confidence                  234578899999999999999999999999996

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.60  E-value=3.5e-07  Score=74.08  Aligned_cols=67  Identities=27%  Similarity=0.538  Sum_probs=50.6

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEec--------CCc-eEEEEEEE-cCEe--ecCCCCC
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL--------PPG-HHQYKFYV-DGEW--RHDENQP   87 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~L--------~~G-~y~YkFiV-DG~w--~~d~~~p   87 (384)
                      .++|+ |...|++|+|+|+||+|++. .+|.+.+  .|.|+++++.        +.| .|.|++.. ||+|  +.||-..
T Consensus         6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~--~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~   83 (99)
T cd02854           6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDE--FGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK   83 (99)
T ss_pred             eEEEEEECCCCCEEEEEccCCCCCCcCcccEECC--CCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence            46777 66689999999999999874 6899864  8999999874        455 47777766 7876  5777655


Q ss_pred             eee
Q 016718           88 HVS   90 (384)
Q Consensus        88 ~~~   90 (384)
                      .+.
T Consensus        84 ~~~   86 (99)
T cd02854          84 YVT   86 (99)
T ss_pred             EEE
Confidence            433

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=2.1e-07  Score=77.73  Aligned_cols=99  Identities=12%  Similarity=0.067  Sum_probs=70.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh-cccCCCCccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~-~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      +++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+.+..... ... . +......++.+     
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-~-~~~~~~~~v~~-----   68 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQE-G-GISRSELTVAD-----   68 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHH-c-CCCchheEHHH-----
Confidence            4678999999999999999999999999983   36   899999999999743110 000 0 00011222222     


Q ss_pred             cccccccCCCCCc--eEe----CCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPF--AML----RPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v--~tv----~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             +|.++.  +.+    .+++++.+|++.|.+++++.+||+
T Consensus        69 -------im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVv  107 (126)
T cd04640          69 -------VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVV  107 (126)
T ss_pred             -------hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEE
Confidence                   223333  233    378999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.60  E-value=4.6e-07  Score=93.64  Aligned_cols=141  Identities=18%  Similarity=0.250  Sum_probs=98.2

Q ss_pred             eeeeeeCCCCeEEEEeehHHHHHHHHHhccCC---CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCC
Q 016718          190 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP  266 (384)
Q Consensus       190 ~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~  266 (384)
                      .+|++.+.    .+.+|..++..++.+....+   .+.+.++.        .+..+.+.  +.    ...|..+++++.+
T Consensus        41 ~~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~--------~~~I~~vk--~~----~dim~~~~v~i~~  102 (486)
T PRK05567         41 NIPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQ--------AEEVRKVK--RS----ESGVVTDPVTVTP  102 (486)
T ss_pred             CcCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHH--------HHHHHHhh--hh----hhcccCCCeEeCC
Confidence            48998752    24478999888776544321   11221211        11111111  00    1146789999999


Q ss_pred             CCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccC
Q 016718          267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA  346 (384)
Q Consensus       267 ~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~  346 (384)
                      ++++.+|+++|.++++.++||+|+   ++   +++|+||.+|+....     .       .+.++.     +       +
T Consensus       103 ~~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~-----~-------~~~~V~-----d-------i  152 (486)
T PRK05567        103 DTTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET-----D-------LSQPVS-----E-------V  152 (486)
T ss_pred             CCCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc-----c-------CCCcHH-----H-------H
Confidence            999999999999999999999983   36   899999999996421     1       112222     2       2


Q ss_pred             CC-CCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          347 NG-RPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       347 ~~-~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      |. ++++++.+++++.+|++.|.+++++.+||+
T Consensus       153 m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVV  185 (486)
T PRK05567        153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVV  185 (486)
T ss_pred             cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence            33 589999999999999999999999999997

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.60  E-value=4.8e-07  Score=73.39  Aligned_cols=84  Identities=11%  Similarity=0.082  Sum_probs=72.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCC--CCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP--AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~--~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig  337 (384)
                      .+..+.+++++.++...|.+++..++||+|+  +  +|   +++|+++.+|+.+....                      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~~---~~~G~v~~~dl~~~~~~----------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDS--TEESP---RLVGYILRSQLVVALKN----------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcC--CCCCC---EEEEEEeHHHHHHHHHH----------------------
Confidence            4678899999999999999999999999983  2  36   89999999999877642                      


Q ss_pred             ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       +       |.+++.++.+++++.++++.|.+++++.+||+
T Consensus        56 -~-------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv   88 (105)
T cd04591          56 -Y-------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVV   88 (105)
T ss_pred             -h-------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEE
Confidence             1       12467899999999999999999999999997

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.59  E-value=3.5e-07  Score=93.78  Aligned_cols=138  Identities=14%  Similarity=0.084  Sum_probs=98.1

Q ss_pred             eeeeeeCCCCeEEEEeehHHHHHHHHHhccCC---CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCC
Q 016718          190 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP  266 (384)
Q Consensus       190 ~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~  266 (384)
                      .+|++.+.    .-.||+..+..++.+...-+   .++        ++..|.+..+.+.       ....|.++++++.+
T Consensus        43 ~~P~vsa~----mdtvTe~~MAi~~A~~GGigvIh~n~--------~i~~qae~v~~VK-------v~eim~~~pvtv~p  103 (475)
T TIGR01303        43 TIPLVVAN----MTAVAGRRMAETVARRGGIVILPQDL--------PIPAVKQTVAFVK-------SRDLVLDTPITLAP  103 (475)
T ss_pred             ccceeecc----chhhHHHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHhhcc-------hhhccccCCeEECC
Confidence            57888652    23488888877776554211   122        2333333332221       11246788899999


Q ss_pred             CCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccC
Q 016718          267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA  346 (384)
Q Consensus       267 ~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~  346 (384)
                      ++++.+|+.+|.+++++.+||+|+    +   +++||||.+|+...      .       ...++            .++
T Consensus       104 ~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~------~-------~~~~V------------~dI  151 (475)
T TIGR01303       104 HDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV------D-------RFTQV------------RDI  151 (475)
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC------C-------CCCCH------------HHH
Confidence            999999999999999999999972    5   89999999998311      0       01122            233


Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          347 NGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       347 ~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      |+++++++.+++++.+|+++|.+++++.+||+
T Consensus       152 Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVV  183 (475)
T TIGR01303       152 MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLV  183 (475)
T ss_pred             ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEE
Confidence            45789999999999999999999999999997

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.59  E-value=9.1e-07  Score=85.89  Aligned_cols=131  Identities=21%  Similarity=0.295  Sum_probs=109.9

Q ss_pred             hhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh
Q 016718          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (384)
Q Consensus       153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (384)
                      ...|+.|+|.--..+..++.++|.++.++.+...-...+|||-.+-++++||+-.+|+++.+.+...    +..++    
T Consensus       198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~d----  269 (423)
T COG4536         198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKED----  269 (423)
T ss_pred             ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHhH----
Confidence            5789999998889999999999999999999999999999997667789999999999888764321    11111    


Q ss_pred             hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                          +..+                 -.+++.|+..++|.+-+..|.+++-|---|+|+   -|   .+.|++|.+||++.
T Consensus       270 ----~~~~-----------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---YG---~i~GLVTLEDIlEE  322 (423)
T COG4536         270 ----ILRA-----------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---YG---DIQGLVTLEDILEE  322 (423)
T ss_pred             ----HHHH-----------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---cC---cEEeeeeHHHHHHH
Confidence                1111                 245688999999999999999999999999983   47   79999999999999


Q ss_pred             HHhhcc
Q 016718          313 ICRHFK  318 (384)
Q Consensus       313 l~~~~~  318 (384)
                      +...+.
T Consensus       323 IVGdft  328 (423)
T COG4536         323 IVGDFT  328 (423)
T ss_pred             Hhcccc
Confidence            998776

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.59  E-value=2e-07  Score=98.35  Aligned_cols=98  Identities=16%  Similarity=0.190  Sum_probs=80.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|++++.++++++++.++++.|.+++.+.+||+|+   +|   +++|+||.+|+.+.+.....       ..+.+     
T Consensus       452 im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~-------~~~~~-----  513 (574)
T PRK01862        452 LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRD-------TTDKT-----  513 (574)
T ss_pred             HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhcccc-------cccch-----
Confidence            57888899999999999999999999999999983   46   89999999999986643210       00111     


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +       .++|.+++.++++++++.+|+++|.+++++.+||+
T Consensus       514 v-------~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVV  549 (574)
T PRK01862        514 A-------ADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVV  549 (574)
T ss_pred             H-------HHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeE
Confidence            2       23345788999999999999999999999999997

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.56  E-value=2.1e-07  Score=96.09  Aligned_cols=91  Identities=14%  Similarity=0.138  Sum_probs=72.7

Q ss_pred             eEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccccc
Q 016718          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  341 (384)
Q Consensus       262 itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~  341 (384)
                      .+++|++++.+|+.+|.++++..+||+|+..++|   +|+||||..|+...     ..      ..+.++.+     .  
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~~------~~~~~V~d-----I--  166 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----RM------SLDTKVKD-----F--  166 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----cc------CCCCCHHH-----H--
Confidence            5999999999999999999999999998311136   89999999998531     00      12233333     2  


Q ss_pred             ccccCCCC--CceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          342 RIGEANGR--PFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       342 ~v~~~~~~--~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                           |++  +++++.+++++.+|+++|.+++++.|||+
T Consensus       167 -----Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVV  200 (502)
T PRK07107        167 -----MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIV  200 (502)
T ss_pred             -----hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence                 333  78999999999999999999999999997

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.55  E-value=6e-07  Score=72.23  Aligned_cols=84  Identities=17%  Similarity=0.233  Sum_probs=69.7

Q ss_pred             eEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccccc
Q 016718          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  341 (384)
Q Consensus       262 itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~  341 (384)
                      +++.+++++.+|+..|.+.+..++||+|   + |   +++|+++..|++++..              .++.     +   
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~--------------~~~~-----~---   54 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENATY--------------GDVV-----D---   54 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhcc--------------cchh-----h---
Confidence            4789999999999999999999999998   3 6   8999999999986321              0111     1   


Q ss_pred             ccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          342 RIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       342 ~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                          .|..+..++.+++++.+|++.|.+++.+.+||+
T Consensus        55 ----~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv   87 (104)
T cd04594          55 ----YIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVV   87 (104)
T ss_pred             ----hhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEE
Confidence                123467899999999999999999999999997

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.54  E-value=6.2e-07  Score=72.13  Aligned_cols=91  Identities=18%  Similarity=0.328  Sum_probs=70.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|+..|.+++++++||+|   + |   +++|++|..|+.+++......       .+.+     +++ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~-----~~~-   61 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLP-----VRE-   61 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcC-----HHH-
Confidence            467899999999999999999999999997   3 5   899999999999987643211       0111     222 


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            .|.+++.++.+++++.+|+++|.+ . ..+||+
T Consensus        62 ------~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv   92 (110)
T cd04609          62 ------VMGEPLPTVDPDAPIEELSELLDR-G-NVAVVV   92 (110)
T ss_pred             ------HhcCCCceeCCCCcHHHHHHHHHh-C-CceeEE
Confidence                  234578899999999999999988 3 235654

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.53  E-value=3.6e-07  Score=94.43  Aligned_cols=95  Identities=11%  Similarity=0.018  Sum_probs=76.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      |.+++++++|++++.+|+++|.++++..+||+|+...+|   +++|+||.+|+....     .       .+.++.++  
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~-----~-------~~~~V~eI--  168 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN-----D-------RETKLSEV--  168 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc-----c-------cCCcHHHH--
Confidence            568889999999999999999999999999998310135   899999999995421     0       12233332  


Q ss_pred             cccccccccCCCCC--ceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          337 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       337 g~~~~~v~~~~~~~--v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                                |.++  ++++.+++++.+|+++|.+++++.+||+
T Consensus       169 ----------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVV  202 (505)
T PLN02274        169 ----------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLV  202 (505)
T ss_pred             ----------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence                      2334  8999999999999999999999999998

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.51  E-value=9.4e-07  Score=70.88  Aligned_cols=88  Identities=15%  Similarity=0.286  Sum_probs=71.8

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++.++.++.+++..|.+++..++||+|   + +   +++|+++..|+++.     ..        +.++     ++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~-----~~--------~~~~-----~~   56 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK-----DP--------DETV-----EE   56 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc-----Cc--------cccH-----HH
Confidence            4678899999999999999999989999997   3 5   89999999999752     00        1112     22


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             .|..++.++.+++++.+|+++|.+++.+.+||+
T Consensus        57 -------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   89 (107)
T cd04610          57 -------IMSKDLVVAVPEMDIMDAARVMFRTGISKLPVV   89 (107)
T ss_pred             -------hCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEE
Confidence                   234577899999999999999999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.49  E-value=9.3e-07  Score=72.24  Aligned_cols=92  Identities=13%  Similarity=0.109  Sum_probs=69.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++++.+++++.+|++.|.++++..+||+|+...+|   +++|+++..|++....    .        ..++.     + 
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~~----~--------~~~v~-----~-   61 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLTD----S--------ETPLS-----E-   61 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhhc----c--------CCCHH-----H-
Confidence            467889999999999999999999999998311136   8999999999864311    0        01122     2 


Q ss_pred             ccccccCCCCCceEeCC--CCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRP--TASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~--d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            +|.++..++..  ++++.+|++.|.++++..+||+
T Consensus        62 ------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv   96 (114)
T cd04602          62 ------VMTPREVLVVAPTGITLEEANEILRESKKGKLPIV   96 (114)
T ss_pred             ------hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEE
Confidence                  22345566655  9999999999999999999997

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.47  E-value=7e-07  Score=92.21  Aligned_cols=95  Identities=16%  Similarity=0.073  Sum_probs=75.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      |..++++++|++++.+|+.+|.++++..+||+|+...++   +++||||.+|+...     ..       .+.++.    
T Consensus       102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~~-----~~-------~~~~V~----  162 (495)
T PTZ00314        102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDFV-----KD-------KSTPVS----  162 (495)
T ss_pred             cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhhc-----cc-------CCCCHH----
Confidence            567789999999999999999999999999998411125   89999999998621     01       112222    


Q ss_pred             cccccccccCCCC--CceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          337 GTWVPRIGEANGR--PFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       337 g~~~~~v~~~~~~--~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       +.       |.+  +++++.+++++.+|+++|.++++..+||+
T Consensus       163 -di-------Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVV  198 (495)
T PTZ00314        163 -EV-------MTPREKLVVGNTPISLEEANEVLRESRKGKLPIV  198 (495)
T ss_pred             -Hh-------hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEE
Confidence             33       344  78999999999999999999999999997

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.45  E-value=7.3e-07  Score=86.17  Aligned_cols=96  Identities=10%  Similarity=0.090  Sum_probs=76.7

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|+.  +++++.+++++.+++..+.+++..|+||+++  +.+   +++|+|+.+|+++++.....         ..    
T Consensus        72 iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~--~~d---~iiGiv~~kDll~~~~~~~~---------~~----  133 (292)
T PRK15094         72 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDAE---------AF----  133 (292)
T ss_pred             EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC--CCC---cEEEEEEHHHHHhHhhccCC---------cC----
Confidence            5665  6999999999999999999999999999974  224   79999999999976532110         01    


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       .+.+.+        ++++++.+++++.+|++.|.+++...+||+
T Consensus       134 -~l~~l~--------r~~~~V~e~~~l~~~L~~m~~~~~~~a~Vv  169 (292)
T PRK15094        134 -SMDKVL--------RQAVVVPESKRVDRMLKEFRSQRYHMAIVI  169 (292)
T ss_pred             -CHHHHc--------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEE
Confidence             122233        356699999999999999999999999997

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.44  E-value=9.2e-07  Score=90.51  Aligned_cols=148  Identities=12%  Similarity=0.157  Sum_probs=98.2

Q ss_pred             CeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCC
Q 016718          189 PMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD  268 (384)
Q Consensus       189 ~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~  268 (384)
                      ...|++.+.    ...+|+.++..++......+ .+. .   ..++....+..+.+.  +..    ..|.++++++.+++
T Consensus        33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~G-vI~-~---n~~~e~q~~~V~~Vk--~~~----~~~~~~~vtl~~~~   97 (450)
T TIGR01302        33 LNIPILSSP----MDTVTESRMAIAMAREGGIG-VIH-R---NMSIEEQAEQVKRVK--RAE----NGIISDPVTISPET   97 (450)
T ss_pred             cCCCeeecC----CCccCHHHHHHHHHhcCCCc-eee-c---CCCHHHHHHHHhhhc--ccc----CceecCceEeCCCC
Confidence            457888642    23479999877776544321 010 0   011111122111111  111    13677899999999


Q ss_pred             CHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCC
Q 016718          269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG  348 (384)
Q Consensus       269 ~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~  348 (384)
                      ++.+|+++|.+++++++||+|++...+   +++|+||.+|++...     .       .+.++     .+.       |.
T Consensus        98 tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~V-----~dv-------m~  150 (450)
T TIGR01302        98 TVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKPV-----SEV-------MT  150 (450)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCCH-----HHh-------hC
Confidence            999999999999999999998410014   799999999997421     1       01222     222       34


Q ss_pred             -CCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          349 -RPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       349 -~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       .+++++.+++++.+|+++|.++++..+||+
T Consensus       151 ~~~~~~V~~~~sl~eal~~m~~~~~~~lpVV  181 (450)
T TIGR01302       151 REEVITVPEGIDLEEALKVLHEHRIEKLPVV  181 (450)
T ss_pred             CCCCEEECCCCcHHHHHHHHHHcCCCeEEEE
Confidence             389999999999999999999999999997

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.42  E-value=1.1e-06  Score=70.84  Aligned_cols=91  Identities=16%  Similarity=0.240  Sum_probs=70.1

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++.+++++.+++..|.+++..++||+|+   +|   +++|++|.+++++..     .       .+.++     .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~~v-----~~   58 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDKPV-----SE   58 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCCCH-----HH
Confidence            35678999999999999999999999999984   36   899999999986421     0       01122     22


Q ss_pred             cccccccCCCCCceEeCC-CCCHHHHHHHHHhCCCceeeecc
Q 016718          339 WVPRIGEANGRPFAMLRP-TASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~-d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                      .+       ..+...+.+ ++++.+|+++|.+.+.+.+||+-
T Consensus        59 ~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~   93 (110)
T cd04601          59 VM-------TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD   93 (110)
T ss_pred             hc-------ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc
Confidence            22       234556666 99999999999999999999963

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.41  E-value=1.6e-06  Score=71.02  Aligned_cols=91  Identities=10%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcC-CCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~-i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++.++.+++++.+|++.|.+.+ .+.+||+|   + |   +++|+++..|+++++...+..     ....    +..++ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~-----~~~~----~~~v~-   64 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGR-----ALYG----KKPVS-   64 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhH-----HHHc----CCcHH-
Confidence            5668899999999999998887 89999998   3 6   899999999999876542110     0000    11222 


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCc
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLT  373 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is  373 (384)
                            +.|..+..++.+++++.+|+..|.+++..
T Consensus        65 ------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   93 (119)
T cd04598          65 ------EVMDPDPLIVEADTPLEEVSRLATGRDSQ   93 (119)
T ss_pred             ------HhcCCCcEEecCCCCHHHHHHHHHcCCcc
Confidence                  33456889999999999999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.39  E-value=1.6e-06  Score=70.21  Aligned_cols=85  Identities=13%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             EeCCCCCHHHHHHHHHhcC-----CCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccc
Q 016718          263 QAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (384)
Q Consensus       263 tv~~~~~l~~a~~~m~~~~-----i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig  337 (384)
                      ++.+++++.++++.|.+++     +..+||+|+   +|   +++|++|.+++++.      .       .+     ..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------~-------~~-----~~v~   56 (109)
T cd04606           1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------D-------PD-----TPVS   56 (109)
T ss_pred             CccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------C-------Cc-----chHH
Confidence            3678999999999999877     578999973   35   79999999998751      0       01     1223


Q ss_pred             ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++       +..+..++.+++++.++++.|.+++...+||+
T Consensus        57 ~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv   90 (109)
T cd04606          57 DI-------MDTDVISVSADDDQEEVARLFEKYDLLALPVV   90 (109)
T ss_pred             HH-------hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeE
Confidence            33       34578999999999999999999999999996

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.39  E-value=2.2e-06  Score=78.42  Aligned_cols=129  Identities=18%  Similarity=0.270  Sum_probs=107.6

Q ss_pred             hhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh
Q 016718          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (384)
Q Consensus       153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (384)
                      ...++.|+|-.-++.++++.+.++.+....+.+..-+.+||+.+++..+.|||-..||+..+..   +...+        
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~---~~~~F--------  133 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS---DAEPF--------  133 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC---Ccccc--------
Confidence            4788999998888999999999999999999999999999998778899999999999876531   11111        


Q ss_pred             hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                         .+++                 +-+|.+.|+....|...++-|..++-|-..|+|.  - |   -+-|+||..||++.
T Consensus       134 ---~i~~-----------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDE--f-G---gVsGLVTIEDiLEq  187 (293)
T COG4535         134 ---DIKE-----------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE--F-G---GVSGLVTIEDILEQ  187 (293)
T ss_pred             ---cHHH-----------------hcccceecccchhHHHHHHHHHhhcCceEEEEec--c-C---CeeeeEEHHHHHHH
Confidence               1122                 2478889999999999999999999999999984  3 5   49999999999999


Q ss_pred             HHhhcc
Q 016718          313 ICRHFK  318 (384)
Q Consensus       313 l~~~~~  318 (384)
                      +.....
T Consensus       188 IVGdIE  193 (293)
T COG4535         188 IVGDIE  193 (293)
T ss_pred             Hhcccc
Confidence            986543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=4.1e-06  Score=84.35  Aligned_cols=107  Identities=16%  Similarity=0.215  Sum_probs=85.3

Q ss_pred             EEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhcccc
Q 016718          169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR  248 (384)
Q Consensus       169 ~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~  248 (384)
                      ...++.+..+|++.|.+++...+.|+|. .++++|+|+..++......   . ..+             .+.        
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~---~-~~~-------------~~~--------  342 (400)
T PRK10070        289 RKTPGFGPRSALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ---Q-QGL-------------DAA--------  342 (400)
T ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc---C-Cch-------------hhh--------
Confidence            3446678999999999999999999995 7899999999998644321   0 000             111        


Q ss_pred             ccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh
Q 016718          249 QMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH  316 (384)
Q Consensus       249 ~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~  316 (384)
                              +...+.++.++++|.+++..|.+.... +||+|+   +|   +++|+||..++++.|...
T Consensus       343 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~---~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        343 --------LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE---DQ---QYVGIISKGMLLRALDRE  395 (400)
T ss_pred             --------hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---CC---cEEEEEEHHHHHHHHHhc
Confidence                    245577999999999999999997766 999983   46   899999999999999753

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.38  E-value=5.6e-06  Score=82.40  Aligned_cols=108  Identities=10%  Similarity=0.210  Sum_probs=86.9

Q ss_pred             EEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhccc
Q 016718          168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK  247 (384)
Q Consensus       168 v~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~  247 (384)
                      +...++.+..+|++.|..++...+.|+|. ++++.|+++..++..++...    ..             +.+        
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~----~~-------------~~~--------  306 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVDR-QNKLVGVVDVESIKQARKKA----QG-------------LQD--------  306 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeHHHHHHHhhcC----Cc-------------hhh--------
Confidence            35566778999999999999999999995 68999999999886443211    00             011        


Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh
Q 016718          248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH  316 (384)
Q Consensus       248 ~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~  316 (384)
                              .+...+.++.++++|.+++.+|.+++.. +||+|.   +|   +++|+||..+++++|...
T Consensus       307 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~---~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       307 --------VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE---DQ---RLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             --------hhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC---CC---cEEEEEEHHHHHHHHHhh
Confidence                    1345677899999999999999999988 999983   46   899999999999999753

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.37  E-value=1.7e-06  Score=87.44  Aligned_cols=94  Identities=14%  Similarity=0.156  Sum_probs=76.9

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|+.  ++++++.++++.+++++|.+++..|+||.++  +.+   +++||++.+|++.++..   .             .
T Consensus       196 iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~--~~d---~ivGiv~~kDll~~~~~---~-------------~  254 (408)
T TIGR03520       196 VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE--TID---NITGVLYIKDLLPHLNK---K-------------N  254 (408)
T ss_pred             eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC--CCC---ceEEEEEHHHHHhHhcc---C-------------C
Confidence            5764  7999999999999999999999999999974  223   79999999999976431   0             0


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ..+...+        +++.+|++++++.++++.|.+++.+..+|+
T Consensus       255 ~~l~~~~--------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVv  291 (408)
T TIGR03520       255 FDWQSLL--------REPYFVPENKKLDDLLRDFQEKKNHLAIVV  291 (408)
T ss_pred             CCHHHHc--------CCCeEeCCCCcHHHHHHHHHhcCceEEEEE
Confidence            1223333        477899999999999999999999999886

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.34  E-value=2.8e-06  Score=89.08  Aligned_cols=54  Identities=31%  Similarity=0.367  Sum_probs=49.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                      +|.++++++++++++.+|+++|.+++++++||+|+   +|   +++|+||..|+.+.+..
T Consensus        73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~  126 (546)
T PRK14869         73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMD  126 (546)
T ss_pred             hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHh
Confidence            47889999999999999999999999999999983   36   89999999999997765

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.33  E-value=1.6e-06  Score=88.73  Aligned_cols=150  Identities=15%  Similarity=0.139  Sum_probs=107.1

Q ss_pred             HhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCC----CeEEEEeehHHHHHHHHHhcc--C-CC
Q 016718          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK----GRFVGVLSALDFILILRELGT--N-GS  222 (384)
Q Consensus       150 ~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~----~~~vGilT~~Dli~~l~~~~~--~-~~  222 (384)
                      ..|++.++.|+|  +.+|+++..-..+...+++|....-.++||+|...    +++.|+|-++-++..|+....  + +.
T Consensus       577 ~~mr~L~a~ev~--~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  577 PYMRNLTAGEVM--SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS  654 (762)
T ss_pred             hHhhhhhHhhhc--cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence            456789999999  77999999999999999999999999999999532    478899999998877653221  1 11


Q ss_pred             CC--------Chhhhhhh--hHHHH---HHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEe
Q 016718          223 NL--------TEEELETH--TISAW---KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIH  289 (384)
Q Consensus       223 ~~--------~~~~l~~~--~i~~~---~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd  289 (384)
                      ..        ..+|+.+.  .+++.   .+.+..+     .|-. ..|...+++|.+++|+..+..+|.+-|++++-|++
T Consensus       655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~y-----vDl~-p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~  728 (762)
T KOG0474|consen  655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMY-----VDLH-PFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP  728 (762)
T ss_pred             ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhc-----cccc-cccCCCCcccCcccchHHHHHHHHHhcceeEEEec
Confidence            11        11111110  01100   0000000     1111 24777789999999999999999999999999998


Q ss_pred             cCCCCCCcccEEEEeeHHHHHHHH
Q 016718          290 STGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       290 ~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      .  . .   +++||+|++|+.++=
T Consensus       729 ~--~-~---~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  729 K--T-N---RVVGILTRKDLARYR  746 (762)
T ss_pred             C--C-C---ceeEEEehhhhhhHH
Confidence            4  3 3   689999999999774

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.29  E-value=5e-07  Score=70.62  Aligned_cols=58  Identities=31%  Similarity=0.645  Sum_probs=45.1

Q ss_pred             eEEEEE-eeCCCceEEEEecCCC-CCCC-CCCCCCCCCCCeEEEEEe--cCCceEEEEEEEcCE
Q 016718           21 VPVRFI-WPNGGRRVSLSGSFTR-WSEP-MPMSPSEGCPAVFQIICR--LPPGHHQYKFYVDGE   79 (384)
Q Consensus        21 ~~v~f~-w~~~~~~V~v~GsF~~-W~~~-~~m~~~~~~~~~~~~~~~--L~~G~y~YkFiVDG~   79 (384)
                      ..++|+ |...|++|.|++.|++ |... ++|++. ..+|.|++++.  +++|.++|+|.|+|.
T Consensus        11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-~~~G~w~~~~~~~~~~g~~~Y~y~i~~~   73 (85)
T PF02922_consen   11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-DDDGVWEVTVPGDLPPGGYYYKYRIDGD   73 (85)
T ss_dssp             TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred             CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence            467777 5668999999999999 8754 689841 23899999998  898988888888754

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.27  E-value=4.9e-06  Score=85.21  Aligned_cols=91  Identities=14%  Similarity=0.209  Sum_probs=72.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|.+++.++.+++++.++++.|.++++.++||+|+   ++   +++|+||..|+++.+.....       ..+.++.   
T Consensus       340 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~---  403 (454)
T TIGR01137       340 LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKA-------NPDDAVS---  403 (454)
T ss_pred             hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCC-------CcCCCHH---
Confidence            58889999999999999999999999999999983   35   89999999999997754211       0111222   


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCC
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGD  371 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~  371 (384)
                               ++|++++.++++++++.+++++|.+++
T Consensus       404 ---------~im~~~~~~v~~~~~l~~a~~~~~~~~  430 (454)
T TIGR01137       404 ---------KVMSKKFIQIGEGEKLSDLSKFLEKNS  430 (454)
T ss_pred             ---------HhcCCCCeEECCcCcHHHHHHHHHHCC
Confidence                     234568889999999999999998864

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=1.6e-05  Score=63.72  Aligned_cols=88  Identities=17%  Similarity=0.261  Sum_probs=71.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      .+.++.+++++.+++..|.+.+..++||+|+   ++   +++|+++..++++..     .        ..++.     ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~-----~--------~~~~~-----~~   57 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP-----E--------EEQLA-----LL   57 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc-----c--------cchHH-----HH
Confidence            4678999999999999999999999999983   35   899999999997521     0        01111     11


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             |.++..++.+++++.+++..|.+++.+.+||+
T Consensus        58 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv   89 (106)
T cd04638          58 -------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVV   89 (106)
T ss_pred             -------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEE
Confidence                   23578899999999999999999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.19  E-value=6.1e-06  Score=84.51  Aligned_cols=93  Identities=10%  Similarity=0.046  Sum_probs=75.9

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHh-----cCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccc
Q 016718          255 RPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  329 (384)
Q Consensus       255 ~~m~~~~itv~~~~~l~~a~~~m~~-----~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~  329 (384)
                      .+|+++++++++++++.+|++.|.+     +++..++|+|+   ++   +++|+++.+|++..      . +      +.
T Consensus       135 ~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~-~------~~  195 (449)
T TIGR00400       135 RIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K-P------EE  195 (449)
T ss_pred             HhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C-C------CC
Confidence            3689999999999999999999976     56778999973   35   89999999999742      1 0      11


Q ss_pred             ccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       330 ~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                           .++++       |.++++++++++++.+|++.|.++++.++||+
T Consensus       196 -----~v~~i-------m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVV  232 (449)
T TIGR00400       196 -----ILSSI-------MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVV  232 (449)
T ss_pred             -----cHHHH-------hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEE
Confidence                 23333       45678999999999999999999999999997

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.01  E-value=1.5e-05  Score=78.29  Aligned_cols=108  Identities=19%  Similarity=0.276  Sum_probs=87.3

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (384)
                      ..+++.|+.++.+++++...+++..+||....  ..+++|+||.+|+- .+   ..+. .+            +.+    
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~-f~---~~~~-~~------------~~~----  175 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQ-FL---EDNS-LL------------VSD----  175 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhh-hh---hccc-ch------------hhh----
Confidence            56789999999999999999999999998532  46999999999962 22   1110 00            111    


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                                  +|+...++...+.+|.++=++|.+++-..+||+|+   +|   +||.||+..|+.|.
T Consensus       176 ------------vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~---~g---elva~~~rtDl~k~  226 (503)
T KOG2550|consen  176 ------------VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD---KG---ELVAMLSRTDLMKN  226 (503)
T ss_pred             ------------hcccccccccccccHHHHHHHHHhhhcCCcceecc---CC---ceeeeeehhhhhhh
Confidence                        35666699999999999999999999999999984   46   89999999999886

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.98  E-value=1.3e-05  Score=66.03  Aligned_cols=54  Identities=22%  Similarity=0.439  Sum_probs=48.7

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli  211 (384)
                      .++.|+|  ..++.++.+++++.+|+++|.++++..+||+|. +++++|+||..|+.
T Consensus        58 ~~v~dim--~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVI--NRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhc--CCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhh
Confidence            6788999  446789999999999999999999999999995 68999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.00022  Score=74.92  Aligned_cols=138  Identities=23%  Similarity=0.324  Sum_probs=78.8

Q ss_pred             eeEEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCE-----eecCCCCCeeeC
Q 016718           20 LVPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVSG   91 (384)
Q Consensus        20 ~~~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~-----w~~d~~~p~~~d   91 (384)
                      ...++|+ |...++.|.|.|+||+|+.. .+|.... ..|.|.++++ +++| +.|||.+++.     ++.||..-....
T Consensus        35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~-~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~  112 (628)
T COG0296          35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRK-ESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEV  112 (628)
T ss_pred             CCceEEEEECCCCCeEEEEeecCCccceecccccCC-CCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCC
Confidence            3456776 88889999999999999983 3555432 4799999999 9999 9999999653     255554433333


Q ss_pred             CCCCeeeEEEeccCCCCCCCCC--CCCCCC--Ccccc-ccccccCCCCC---CCHHHHHHHHHHHHHhhhhccccccCCC
Q 016718           92 NYGVVNCVYIAVPQPDMVPNTI--SPETSG--NMEVD-DVVMRPEGFAQ---YSEADLQLSRDRISSFLSTHTVYELLPD  163 (384)
Q Consensus        92 ~~G~~nNvi~v~~~~~~~p~~~--~~~~~~--~~dl~-~~~~~~~~~~~---~s~~~~e~~~~~~~~~l~~~~~~dvmp~  163 (384)
                      .-++.+-+.   ..++..=.-.  ...-.+  ..++- =.+| -+.+.+   .+-.++..++-+|-.-|+ .|+-++||.
T Consensus       113 ~p~~aS~v~---~~~~y~W~d~~~~~~~~~~~~e~~vIYElH-vGs~~~~~~~~~~e~a~~llpYl~elG-~T~IELMPv  187 (628)
T COG0296         113 GPHTASQVV---DLPDYEWQDERWDRAWRGRFWEPIVIYELH-VGSFTPDRFLGYFELAIELLPYLKELG-ITHIELMPV  187 (628)
T ss_pred             CCCCcceec---CCCCcccccccccccccCCCCCCceEEEEE-eeeccCCCCcCHHHHHHHHhHHHHHhC-CCEEEEccc
Confidence            222222121   2111111100  001111  11111 1222 344433   344555555666655565 899999997


Q ss_pred             C
Q 016718          164 S  164 (384)
Q Consensus       164 s  164 (384)
                      .
T Consensus       188 ~  188 (628)
T COG0296         188 A  188 (628)
T ss_pred             c
Confidence            6

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.73  E-value=0.00011  Score=49.06  Aligned_cols=47  Identities=19%  Similarity=0.450  Sum_probs=41.9

Q ss_pred             ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       261 ~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      ++++.+++++.+++..|.+++.+++||+++   ++   +++|+++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE---EG---RLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC---CC---eEEEEEEHHHHHHhh
Confidence            568899999999999999999999999983   35   799999999998765

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.73  E-value=0.00012  Score=58.51  Aligned_cols=53  Identities=26%  Similarity=0.470  Sum_probs=42.8

Q ss_pred             EEEEEeeC---CCceEEEEec---CCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 016718           22 PVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        22 ~v~f~w~~---~~~~V~v~Gs---F~~W~~~--~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      +++|....   .|++++|+|+   |.+|++.  ++|....  .+.|++++.||++ .++|||++
T Consensus         2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~--~~~W~~~v~l~~~~~~eYKy~~   63 (95)
T cd05808           2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAAT--YPVWSGTVDLPAGTAIEYKYIK   63 (95)
T ss_pred             eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCC--CCCEEEEEEeCCCCeEEEEEEE
Confidence            56666654   5789999996   7899964  5888754  6789999999997 59999997

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.71  E-value=8.3e-05  Score=59.66  Aligned_cols=56  Identities=29%  Similarity=0.561  Sum_probs=46.2

Q ss_pred             eEEEEEeeC---CCceEEEEecCC---CCCC--CCCCCCCCC--CCCeEEEEEecCCc-eEEEEEEE
Q 016718           21 VPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        21 ~~v~f~w~~---~~~~V~v~GsF~---~W~~--~~~m~~~~~--~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      +.|+|....   .+++|+|+||..   +|++  .++|...+.  ....|++++.||.| .++|||++
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            678888844   589999999987   7997  468887532  36799999999998 59999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.66  E-value=0.00016  Score=48.24  Aligned_cols=47  Identities=30%  Similarity=0.610  Sum_probs=41.6

Q ss_pred             EEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHH
Q 016718          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (384)
Q Consensus       167 vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l  214 (384)
                      .+++++++++.++.+.|.++++..+||+++ +++++|+++..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence            457889999999999999999999999996 58999999999997643

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.66  E-value=0.00012  Score=60.24  Aligned_cols=50  Identities=24%  Similarity=0.370  Sum_probs=44.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                      +|.+++.++.+++++.+|+..|.+++++.+||+|.   +|   +++|+||..||.+
T Consensus        63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~~---~l~Givt~~dl~~  112 (113)
T cd04597          63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD---DG---TPAGIITLLDLAE  112 (113)
T ss_pred             hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHhhc
Confidence            36778899999999999999999999999999983   36   8999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.57  E-value=0.00059  Score=55.24  Aligned_cols=67  Identities=28%  Similarity=0.531  Sum_probs=44.3

Q ss_pred             EEEE-eeCCCceEEEEecCCCCCC-CCCCCCCCCCCCeEEEEEe-cCCce-EEEEEEEc-CEe--ecCCCCCeee
Q 016718           23 VRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVD-GEW--RHDENQPHVS   90 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~GsF~~W~~-~~~m~~~~~~~~~~~~~~~-L~~G~-y~YkFiVD-G~w--~~d~~~p~~~   90 (384)
                      ++|+ |...+++|.|+++|++|.. ..+|.+.+ ..|.|.+.+. +++|. |.|++..+ |.+  +.||....+.
T Consensus        23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~-~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~   96 (106)
T cd02855          23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRG-DSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE   96 (106)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCcceecEECC-CCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE
Confidence            5666 6668999999999999965 35898753 3799998886 66664 44444443 333  4455444333

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.49  E-value=0.00034  Score=56.47  Aligned_cols=65  Identities=18%  Similarity=0.179  Sum_probs=48.0

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCC-----CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCE-----eecCCCCCee
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWS-----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHV   89 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~-----~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~-----w~~d~~~p~~   89 (384)
                      .++|+ |...+++|.|.. |++|.     ..++|.+.  .+|.|++.+. +.+|. .|+|.|+|.     ...||.....
T Consensus         9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~--~~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~   84 (100)
T cd02860           9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG--ENGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKAL   84 (100)
T ss_pred             CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC--CCCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeE
Confidence            36775 677799999998 88886     34689874  3899999987 45565 488888775     6777776654


Q ss_pred             e
Q 016718           90 S   90 (384)
Q Consensus        90 ~   90 (384)
                      .
T Consensus        85 ~   85 (100)
T cd02860          85 S   85 (100)
T ss_pred             e
Confidence            4

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.00094  Score=69.07  Aligned_cols=136  Identities=8%  Similarity=0.060  Sum_probs=91.1

Q ss_pred             cEEEEecC-ccHHHHHHHHHHcCCCeeeee-eCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718          166 KVTALDVN-LAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (384)
Q Consensus       166 ~vv~i~~~-~~l~~A~~~L~~~~i~~lPV~-D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (384)
                      +++++..+ .++.+...+|.+....+.||+ ++++.+++|+++.+|+.-.+.......+.....++.  ...+.......
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~--f~~~~~~~~~~  634 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY--FNDPSPSAVAG  634 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc--cCCCCccccCC
Confidence            45555554 899999999999999999986 445679999999999987765433221111000000  00000000000


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      .  ..+ -+...+|...++|+...+++..++.++.+-+++.+-|..    +|   ++.|+||.+|++++.
T Consensus       635 ~--~~~-~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~----~G---~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  635 I--PSR-LDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK----NG---ILLGIITKKDCLRHT  694 (696)
T ss_pred             C--CCC-cCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc----CC---eeEeeeehHHHHHhh
Confidence            0  000 011124566778999999999999999999999999985    37   999999999999875

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.39  E-value=0.0015  Score=52.08  Aligned_cols=53  Identities=25%  Similarity=0.381  Sum_probs=43.6

Q ss_pred             eEEEEEeeC---CCceEEEEecC---CCCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 016718           21 VPVRFIWPN---GGRRVSLSGSF---TRWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        21 ~~v~f~w~~---~~~~V~v~GsF---~~W~~~~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      +.++|+...   .|++++|+|+-   .+|++..+|...   .+.|++++.+|++ .++|||++
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~   61 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI   61 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence            567777765   48999999986   589987788764   4569999999998 59999999

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.34  E-value=0.00054  Score=66.42  Aligned_cols=89  Identities=8%  Similarity=0.137  Sum_probs=74.7

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      .+.-++.+++++.+-..+-.+.+..|.||+|.   ..   +++||+|.+|++...-    .              -++. 
T Consensus       198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~~~----~--------------t~ie-  252 (432)
T COG4109         198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDKKP----S--------------TTIE-  252 (432)
T ss_pred             ccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcCCC----C--------------ccHH-
Confidence            56678999999999999999999999999984   34   8999999999875421    0              1222 


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            ..|+++.+|+.+.+++..+..+|.-.++.-+||+
T Consensus       253 ------KVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv  286 (432)
T COG4109         253 ------KVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVV  286 (432)
T ss_pred             ------HHhccCCeeecccchHHHHHHHHHhccceeeeEE
Confidence                  2356889999999999999999999999999997

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.31  E-value=0.0017  Score=52.46  Aligned_cols=57  Identities=23%  Similarity=0.406  Sum_probs=42.9

Q ss_pred             eeEEEEEeeC----CCceEEEEe---cCCCCCCCC-CCCCCC-CCCCeEEEEEecCCce-EEEEEEE
Q 016718           20 LVPVRFIWPN----GGRRVSLSG---SFTRWSEPM-PMSPSE-GCPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        20 ~~~v~f~w~~----~~~~V~v~G---sF~~W~~~~-~m~~~~-~~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      -++|+|....    .+++++|+|   ++.+|+... +|.... ...+.|++++.||+|. ++|||++
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~   68 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK   68 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            3789999743    478999999   577998642 343221 2357899999999995 9999999

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.25  E-value=0.001  Score=55.67  Aligned_cols=57  Identities=25%  Similarity=0.496  Sum_probs=44.5

Q ss_pred             EEEEEeeC----CCceEEEEec---CCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcC
Q 016718           22 PVRFIWPN----GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG   78 (384)
Q Consensus        22 ~v~f~w~~----~~~~V~v~Gs---F~~W~~~--~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiVDG   78 (384)
                      .++|....    .+++|+|+|+   +.+|++.  .+|.+.......|++++.||++ .++|||++..
T Consensus         2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~~   68 (120)
T cd05814           2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVAV   68 (120)
T ss_pred             eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEEE
Confidence            45666654    4789999999   8899854  5888752135789999999998 7999999943

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.24  E-value=0.00087  Score=71.99  Aligned_cols=65  Identities=26%  Similarity=0.595  Sum_probs=48.9

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCEe--ecCCCCCee
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHV   89 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiV---DG~w--~~d~~~p~~   89 (384)
                      -++|+ |...|++|.|+|+||+|+.. .+|.+.  ..|+|++.++ +.+| ..|||.|   ||.+  +.||-....
T Consensus       139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~  211 (730)
T PRK12568        139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT  211 (730)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence            46776 66779999999999999875 589875  4899999985 6667 3566666   7866  366665543

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=97.24  E-value=0.00081  Score=72.42  Aligned_cols=64  Identities=25%  Similarity=0.436  Sum_probs=47.0

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEec-------CCceEEEEEEE---cCE--eecCCCCC
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-------PPGHHQYKFYV---DGE--WRHDENQP   87 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~L-------~~G~y~YkFiV---DG~--w~~d~~~p   87 (384)
                      .++|+ |...|++|+|+|+||+|++. .+|++.+  .|+|++.++-       +.|. .|||.|   ||.  ++.||-..
T Consensus       115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~--~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya~  191 (758)
T PLN02447        115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNE--FGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWIK  191 (758)
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCCccCceeCC--CCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchHh
Confidence            45665 88889999999999999875 5898865  7999999863       4453 677777   354  35666544


Q ss_pred             e
Q 016718           88 H   88 (384)
Q Consensus        88 ~   88 (384)
                      .
T Consensus       192 ~  192 (758)
T PLN02447        192 Y  192 (758)
T ss_pred             e
Confidence            3

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.21  E-value=0.00097  Score=71.34  Aligned_cols=66  Identities=23%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEE-cCEe--ecCCCCCee
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYV-DGEW--RHDENQPHV   89 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G-~y~YkFiV-DG~w--~~d~~~p~~   89 (384)
                      .++|+ |...|++|+|+|+||+|.+. .+|.+..  .|+|++++. +.+| .|.|++.. +|.|  +.||.....
T Consensus        39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~--~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~  111 (633)
T PRK12313         39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRE--SGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYF  111 (633)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCcccccccccC--CCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEE
Confidence            57786 55679999999999999875 5898753  799999988 4455 57777654 5665  455554433

>PRK11573 hypothetical protein; Provisional

Probab=97.19  E-value=0.0022  Score=65.11  Aligned_cols=96  Identities=6%  Similarity=0.065  Sum_probs=73.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      .+..+++++.++++.++++++.+++..|+||.++ .. .   +++|++..+|+++++... +..         ++.  .+
T Consensus       195 Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~-~~-D---~IiGiv~~kDll~~~~~~-~~~---------~~~--~l  257 (413)
T PRK11573        195 PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD-SL-D---DAISMLRVREAYRLMTEK-KEF---------TKE--NM  257 (413)
T ss_pred             ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcC-CC-C---ceEEEEEHHHHHHHhhcc-CcC---------CHH--HH
Confidence            3568999999999999999999999999999974 22 3   699999999999865421 110         001  11


Q ss_pred             cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeee
Q 016718          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQ  377 (384)
Q Consensus       337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV  377 (384)
                      ...+        +++..|++++++.++++.|.+++..=.-|
T Consensus       258 ~~~~--------r~~~~Vpe~~~l~~lL~~~~~~~~~~AiV  290 (413)
T PRK11573        258 LRAA--------DEIYFVPEGTPLSTQLVKFQRNKKKVGLV  290 (413)
T ss_pred             Hhhc--------cCCeEeCCCCcHHHHHHHHHhcCCeEEEE
Confidence            1222        57899999999999999999998764433

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.15  E-value=0.0011  Score=67.49  Aligned_cols=96  Identities=16%  Similarity=0.158  Sum_probs=77.9

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhc-----CCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccc
Q 016718          253 NGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL  327 (384)
Q Consensus       253 ~~~~m~~~~itv~~~~~l~~a~~~m~~~-----~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~  327 (384)
                      .+..|+..++++.++.|+.+|+..+.+.     .+..+.|+|.   ++   +|+|++|.++++..      +       -
T Consensus       134 aG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~a------~-------~  194 (451)
T COG2239         134 AGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLTA------E-------P  194 (451)
T ss_pred             hhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhcC------C-------c
Confidence            3457999999999999999999999954     5688999984   45   89999999998743      1       0


Q ss_pred             ccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       328 ~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                      +.+     +       .++|.+.+++|.+++...++.+++.++++-++|||.
T Consensus       195 ~~~-----i-------~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd  234 (451)
T COG2239         195 DEL-----L-------KDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD  234 (451)
T ss_pred             HhH-----H-------HHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence            111     2       223456789999999999999999999999999985

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.10  E-value=0.0056  Score=49.81  Aligned_cols=54  Identities=28%  Similarity=0.525  Sum_probs=43.3

Q ss_pred             eEEEEEeeC-----CCceEEEEecCC---CCCCCC-----CCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 016718           21 VPVRFIWPN-----GGRRVSLSGSFT---RWSEPM-----PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        21 ~~v~f~w~~-----~~~~V~v~GsF~---~W~~~~-----~m~~~~~~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      ++++|+...     .|++++|+|+-.   +|+...     +|...  ....|.+++.||.|. ++|||++
T Consensus         3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~--~~~~W~~~~~lp~~~~veyK~v~   70 (103)
T cd05820           3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCP--NWPDWFVVASVPAGTYIEFKFLK   70 (103)
T ss_pred             ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccC--CCCCEEEEEEcCCCCcEEEEEEE
Confidence            789999864     478999999864   899732     66543  356899999999994 9999999

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.10  E-value=0.0017  Score=52.67  Aligned_cols=53  Identities=21%  Similarity=0.401  Sum_probs=40.5

Q ss_pred             EEEE-eeCCCceEEEEecCCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCE
Q 016718           23 VRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~GsF~~W~--~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~   79 (384)
                      +.|+ |...+++|.|+. |++|.  ..++|++..  +|+|.+.+. +.+|. .|+|.|||.
T Consensus        11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~GvW~~~v~~~~~g~-~Y~y~i~g~   67 (103)
T cd02856          11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEY--GGVWHGFLPGIKAGQ-RYGFRVHGP   67 (103)
T ss_pred             eEEEEECCCCCEEEEEE-EeCCCCEEEEEccccc--CCEEEEEECCCCCCC-EEEEEECCc
Confidence            5675 666799999998 66664  346898754  799999985 56665 799999994

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.09  E-value=0.002  Score=51.44  Aligned_cols=54  Identities=20%  Similarity=0.403  Sum_probs=42.8

Q ss_pred             eEEEEEeeC----CCceEEEEecC---CCCCCCCCCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 016718           21 VPVRFIWPN----GGRRVSLSGSF---TRWSEPMPMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        21 ~~v~f~w~~----~~~~V~v~GsF---~~W~~~~~m~~~~~~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      ++++|+..+    +++.++|+|+=   -+|+...+|....  ...|++++.||++. ++|||++
T Consensus         1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~--~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVK--DGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCC--CCCEEEEEEecCCCcEEEEEEE
Confidence            356777644    45778999985   4899888997653  57899999999985 9999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.94  E-value=0.0089  Score=48.19  Aligned_cols=52  Identities=19%  Similarity=0.386  Sum_probs=41.1

Q ss_pred             EEEEeeC----CCceEEEEecC---CCCCCC--CCCCCCCCCCCeEEEEEecCCc--eEEEEEEE
Q 016718           23 VRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV   76 (384)
Q Consensus        23 v~f~w~~----~~~~V~v~GsF---~~W~~~--~~m~~~~~~~~~~~~~~~L~~G--~y~YkFiV   76 (384)
                      |+|+...    .+++++|+|+-   .+|++.  ++|....  ...|++++.+|++  .++|||++
T Consensus         2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~~p~~~~~ieYKyvi   64 (99)
T cd05816           2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVG--FPIWEADIDISKDSFPFEYKYII   64 (99)
T ss_pred             EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCC--CCcEEEEEEeCCCCccEEEEEEE
Confidence            5566544    47899999995   589964  5888754  6789999999986  59999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>PRK14705 glycogen branching enzyme; Provisional

Probab=96.94  E-value=0.0017  Score=73.23  Aligned_cols=63  Identities=25%  Similarity=0.586  Sum_probs=47.0

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---CEe--ecCCCC
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GEW--RHDENQ   86 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVD---G~w--~~d~~~   86 (384)
                      -+.|. |...+++|+|+|+||+|... .+|.+.. ..|+|++.++ +.+|. .|||.|.   |.|  +.||..
T Consensus       639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~-~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA  709 (1224)
T PRK14705        639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLG-SSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA  709 (1224)
T ss_pred             eEEEEEECCCCCEEEEEEEecCCCCCcccceECC-CCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence            56676 77789999999999999875 5888742 3799999885 77885 6788874   554  344443

>PRK14706 glycogen branching enzyme; Provisional

Probab=96.93  E-value=0.002  Score=68.78  Aligned_cols=65  Identities=31%  Similarity=0.593  Sum_probs=47.7

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEec-CCceEEEEEEEcC---Ee--ecCCCCCee
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVDG---EW--RHDENQPHV   89 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~L-~~G~y~YkFiVDG---~w--~~d~~~p~~   89 (384)
                      -++|+ |...|++|.|+|+||+|... .+|.+.+  .|.|++.++- .+| ..|||.|++   .+  +.||.....
T Consensus        39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~  111 (639)
T PRK14706         39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFF  111 (639)
T ss_pred             cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEE
Confidence            46776 67789999999999999874 5898764  6999999864 455 468888854   33  566655443

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.87  E-value=0.0053  Score=50.01  Aligned_cols=59  Identities=25%  Similarity=0.501  Sum_probs=44.9

Q ss_pred             CceeEEEEEeeC---CCceEEEEecCC---CCCCC--CCCCCCC--CCCCeEEEEEecCCce-EEEEEEE
Q 016718           18 SILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        18 ~~~~~v~f~w~~---~~~~V~v~GsF~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      +..+.++|....   .|+.++|+|+-.   +|++.  ++|....  .....|++++.||++. ++|||++
T Consensus         4 ~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~   73 (106)
T cd05811           4 ATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR   73 (106)
T ss_pred             CCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence            345778888754   589999999964   79964  5786531  1246899999999985 9999997

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.85  E-value=0.0045  Score=50.06  Aligned_cols=45  Identities=24%  Similarity=0.498  Sum_probs=37.5

Q ss_pred             CCceEEEEec---CCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 016718           30 GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        30 ~~~~V~v~Gs---F~~W~~~--~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      .|+.++|+|+   ..+|++.  ++|....  ...|++++.+|++ .++|||++
T Consensus        12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~--~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          12 FGEAVYISGNCNQLGNWNPSKAKRMQWNE--GDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCEEEEEeCcHHHCCCCccccCcccCCC--CCCEEEEEEECCCCcEEEEEEE
Confidence            5799999999   5689964  5787654  5689999999988 59999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.84  E-value=0.0029  Score=68.74  Aligned_cols=58  Identities=31%  Similarity=0.618  Sum_probs=43.8

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEEc-CEe
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GEW   80 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G-~y~YkFiVD-G~w   80 (384)
                      .++|+ |...|++|.|+|+||+|... .+|.+.. ..|.|++++. +++| .|.|++..+ |.|
T Consensus       132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~  194 (726)
T PRK05402        132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRG-ESGVWELFIPGLGEGELYKFEILTADGEL  194 (726)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCCccccceEcC-CCCEEEEEeCCCCCCCEEEEEEeCCCCcE
Confidence            47787 55579999999999999864 5898762 3799998885 5666 577777664 454

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=96.74  E-value=0.011  Score=60.18  Aligned_cols=91  Identities=18%  Similarity=0.224  Sum_probs=72.1

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      .+.+++.++.++++.++++.+.+++..|+||.++ .. +   .++|++..+|++.++..... ..    ...        
T Consensus       214 PR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~-~~-D---~iiGiv~~Kdll~~~~~~~~-~~----~~~--------  275 (429)
T COG1253         214 PRTDIVALDLTDTVEELIELILESGHSRIPVYDG-DL-D---NIIGIVHVKDLLRALLDGQS-DL----DLR--------  275 (429)
T ss_pred             ecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC-CC-C---cEEEEEEHHHHHHHHhcCcc-cc----chh--------
Confidence            3568999999999999999999999999999984 22 3   69999999999999876421 00    000        


Q ss_pred             cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCce
Q 016718          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTL  374 (384)
Q Consensus       337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~  374 (384)
                       ..        -+++..|++.+++.++++.|.+++..=
T Consensus       276 -~~--------~~~~~~Vpet~~~~~lL~~~r~~~~hm  304 (429)
T COG1253         276 -VL--------VRPPLFVPETLSLSDLLEEFREERTHM  304 (429)
T ss_pred             -hc--------ccCCeEecCCCcHHHHHHHHHHhCCeE
Confidence             01        137889999999999999999887653

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.70  E-value=0.012  Score=58.66  Aligned_cols=90  Identities=3%  Similarity=0.051  Sum_probs=70.9

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ...+...++.+..++...|..++...+.|+|.   ++   +++|.++..++.+++... ..           +.+     
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~-~~-----------~~~-----  306 (363)
T TIGR01186       250 TGPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA-QG-----------LQD-----  306 (363)
T ss_pred             ccceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC-Cc-----------hhh-----
Confidence            34456778889999999999999999999984   35   899999999998776421 11           111     


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                             .+...+.++.+++++.+++.+|.+++.. +||+-
T Consensus       307 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  339 (363)
T TIGR01186       307 -------VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD  339 (363)
T ss_pred             -------hhccCCceECCCCcHHHHHHHHHhCCCC-EEEEC
Confidence                   1124667999999999999999999999 99973

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.65  E-value=0.0086  Score=47.55  Aligned_cols=46  Identities=24%  Similarity=0.472  Sum_probs=37.8

Q ss_pred             CCceEEEEecCC---CCCC--CCCCCCCCCCCCeEEEEEecCC--c-eEEEEEEE
Q 016718           30 GGRRVSLSGSFT---RWSE--PMPMSPSEGCPAVFQIICRLPP--G-HHQYKFYV   76 (384)
Q Consensus        30 ~~~~V~v~GsF~---~W~~--~~~m~~~~~~~~~~~~~~~L~~--G-~y~YkFiV   76 (384)
                      .|+.++|+|+..   +|++  .++|...+ ..+.|++++.+|+  + .++|||++
T Consensus        12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          12 FGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence            589999999975   8985  36887653 2578999999999  7 69999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.57  E-value=0.017  Score=46.42  Aligned_cols=54  Identities=24%  Similarity=0.429  Sum_probs=41.5

Q ss_pred             eEEEEEeeC----CCceEEEEecCC---CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 016718           21 VPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        21 ~~v~f~w~~----~~~~V~v~GsF~---~W~~~--~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      ++++|....    .++.++|+|+-.   +|++.  ++|...  ....|.+++.||.| ..+|||++
T Consensus         1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~   64 (97)
T cd05810           1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK   64 (97)
T ss_pred             CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence            356676432    478999999865   89964  577654  35789999999998 59999988

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.46  E-value=0.012  Score=45.92  Aligned_cols=61  Identities=23%  Similarity=0.362  Sum_probs=44.5

Q ss_pred             EEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEc-CEeecCCCCCee
Q 016718           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD-GEWRHDENQPHV   89 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVD-G~w~~d~~~p~~   89 (384)
                      ++|+ |...+++|.|...+  |. ..+|.+.+  +|.|++++.--+|. .|+|.|+ |..+.||.....
T Consensus        10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~--~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~   72 (85)
T cd02853          10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDG--DGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ   72 (85)
T ss_pred             EEEEEeCCCCCEEEEEecC--CC-cccCccCC--CcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence            5676 66689999999744  53 47898754  79999998644665 4777776 467888877654

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.44  E-value=0.022  Score=46.06  Aligned_cols=57  Identities=25%  Similarity=0.315  Sum_probs=42.1

Q ss_pred             eeEEEEEeeC----CCceEEEEecCC---CCCCCC--CCC-CC-CCCCCeEEEEEecCCc-eEEEEEEE
Q 016718           20 LVPVRFIWPN----GGRRVSLSGSFT---RWSEPM--PMS-PS-EGCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        20 ~~~v~f~w~~----~~~~V~v~GsF~---~W~~~~--~m~-~~-~~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      .++++|..+.    .|++++|+|+-.   +|++..  .|. .. ......|.+++.||.| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~   70 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK   70 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence            3788888753    479999999854   899643  232 11 1235689999999999 49999999

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.19  E-value=0.012  Score=61.73  Aligned_cols=61  Identities=23%  Similarity=0.322  Sum_probs=48.5

Q ss_pred             EEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC-EeecCCCCCeee
Q 016718           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVS   90 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG-~w~~d~~~p~~~   90 (384)
                      ++|+ |...|++|.|.+.   + ...+|.+.+  +|+|++++. +.+| +.|+|.||| ..+.||......
T Consensus         1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~~--~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~   64 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---G-ALHAMQRLG--DGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP   64 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---C-CEEeCeECC--CCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence            4575 6778999999973   3 347898864  799999987 6778 789999999 678998887654

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.14  E-value=0.028  Score=56.84  Aligned_cols=85  Identities=7%  Similarity=0.013  Sum_probs=66.6

Q ss_pred             EeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccc
Q 016718          263 QAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPR  342 (384)
Q Consensus       263 tv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~  342 (384)
                      ...++.+..+|+..|.+++...+.|+|.   ++   +++|+|+..++.+..... .           ++.+.        
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~-~-----------~~~~~--------  342 (400)
T PRK10070        289 RKTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ-Q-----------GLDAA--------  342 (400)
T ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC-C-----------chhhh--------
Confidence            3457789999999999999999999984   46   899999999998775421 1           11111        


Q ss_pred             cccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          343 IGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       343 v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                          +...+.++.+++++.+|+..|.+.... +||+
T Consensus       343 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~  373 (400)
T PRK10070        343 ----LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVV  373 (400)
T ss_pred             ----hccCCceeCCCCCHHHHHHHHHhCCCc-EEEE
Confidence                123667999999999999999997766 8886

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=96.07  E-value=0.015  Score=48.41  Aligned_cols=59  Identities=25%  Similarity=0.490  Sum_probs=43.1

Q ss_pred             EEEE-eeCCCceEEEEecCCCCC---C--CCCCCCCC-CCCCeEEEEEe-cCCceEEEEEEEcCEeecC
Q 016718           23 VRFI-WPNGGRRVSLSGSFTRWS---E--PMPMSPSE-GCPAVFQIICR-LPPGHHQYKFYVDGEWRHD   83 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~GsF~~W~---~--~~~m~~~~-~~~~~~~~~~~-L~~G~y~YkFiVDG~w~~d   83 (384)
                      ++|+ |...|++|.|+. |++|.   +  .++|.+.+ +.+|+|++.+. +.+|. .|+|.|+|.|.-+
T Consensus         9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~   75 (119)
T cd02852           9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE   75 (119)
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence            6675 677799999999 88886   2  35776542 23699999876 56776 7999999975433

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.05  E-value=0.025  Score=56.82  Aligned_cols=109  Identities=9%  Similarity=0.032  Sum_probs=71.4

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      -.++.++|...  ......+-+  .|+   ..++...+.|+|.      |+++..+...+..+....  .+         
T Consensus       273 ~l~a~~~m~~~--~~~~~~~~~--~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~---------  328 (382)
T TIGR03415       273 VLTARSLMRPL--TDLEHVDGG--WCV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQ--EV---------  328 (382)
T ss_pred             ceeHHHHhccc--ccccccCcc--hhh---hhcccceeEeecc------ceecccchHhHhhccccc--ch---------
Confidence            45667777321  112222222  333   3388999999983      888877765433221100  00         


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                          .+                 +...+.+++++++|.+++..+.+.+ +-+||+|   + |   +++|+|+..+++++|
T Consensus       329 ----~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~---~-~---~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       329 ----ES-----------------LEAAPTVINPDTLMRDVLAARHRTG-GAILLVE---N-G---RIVGVIGDDNIYHAL  379 (382)
T ss_pred             ----hh-----------------hcccCcccCCCCcHHHHHHHHhcCC-CCeEEee---C-C---eEEEEEeHHHHHHHH
Confidence                11                 1345678999999999999998876 5589987   3 6   899999999999998


Q ss_pred             Hh
Q 016718          314 CR  315 (384)
Q Consensus       314 ~~  315 (384)
                      ..
T Consensus       380 ~~  381 (382)
T TIGR03415       380 LG  381 (382)
T ss_pred             hc
Confidence            64

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=96.02  E-value=0.028  Score=51.98  Aligned_cols=91  Identities=11%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +.++..+++..+.+|.+++..+.+....|.||+..  +..   .+.||+-.+|+|+++......       ++  ++++ 
T Consensus        74 IPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e--dkD---~v~GIL~AKDLL~~~~~~~~~-------F~--i~~l-  138 (293)
T COG4535          74 IPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HVEGILLAKDLLPFMRSDAEP-------FD--IKEL-  138 (293)
T ss_pred             ccHHHheeccccCCHHHHHHHHHHhccccCCcccC--Cch---hhhhhhhHHHHHHHhcCCccc-------cc--HHHh-
Confidence            34678899999999999999999999999999974  222   699999999999997654321       11  1111 


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCc
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLT  373 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is  373 (384)
                                  -||.+.|+++..+...++-+..++..
T Consensus       139 ------------LRPav~VPESKrvd~lLkeFR~~RnH  164 (293)
T COG4535         139 ------------LRPAVVVPESKRVDRLLKEFRSQRNH  164 (293)
T ss_pred             ------------cccceecccchhHHHHHHHHHhhcCc
Confidence                        26999999999999999999887754

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=95.86  E-value=0.02  Score=61.16  Aligned_cols=66  Identities=24%  Similarity=0.532  Sum_probs=47.8

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---CE--eecCCCCCee
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GE--WRHDENQPHV   89 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVD---G~--w~~d~~~p~~   89 (384)
                      .++|+ |...|++|.|+|+||+|... .+|.+.. ..|+|++.++ +.+|. .|+|.|.   |.  ++.||.....
T Consensus        29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~  102 (613)
T TIGR01515        29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRN-DNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYA  102 (613)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCCceecceEec-CCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeee
Confidence            46676 67789999999999999864 4887653 2699999886 35565 5888884   54  4677765443

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=95.76  E-value=0.06  Score=53.49  Aligned_cols=151  Identities=13%  Similarity=0.080  Sum_probs=97.6

Q ss_pred             HHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCC---CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCC
Q 016718          183 LYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR  259 (384)
Q Consensus       183 L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~  259 (384)
                      |..+.....|++.+    ....||+.+...++..+...+   .+.+.|+ ....+..|+.....             .-+
T Consensus        55 ltr~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g-------------~~~  116 (503)
T KOG2550|consen   55 LTRNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENG-------------FIN  116 (503)
T ss_pred             hhhcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhcc-------------ccc
Confidence            34455556688864    345689999887765443211   1222111 11112223322211             134


Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (384)
Q Consensus       260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~  339 (384)
                      +++..+|+.++.++++...++++..+||.+...-+   ++|+||||-+|+--. -.+           .     ..+.+ 
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~---~KLvG~vtsrdi~f~-~~~-----------~-----~~~~~-  175 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRG---SKLVGIITSRDIQFL-EDN-----------S-----LLVSD-  175 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCccc---ceeEEEEehhhhhhh-hcc-----------c-----chhhh-
Confidence            56789999999999999999999999999631122   389999999998543 111           1     11222 


Q ss_pred             ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            +|....++.....++.++=++|.+++-..+|||
T Consensus       176 ------vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv  208 (503)
T KOG2550|consen  176 ------VMTKNPVTGAQGITLKEANEILKKIKKGKLPVV  208 (503)
T ss_pred             ------hcccccccccccccHHHHHHHHHhhhcCCccee
Confidence                  233455899999999999999999999999997

>PRK05402 glycogen branching enzyme; Provisional

Probab=95.59  E-value=0.018  Score=62.59  Aligned_cols=60  Identities=12%  Similarity=0.013  Sum_probs=43.5

Q ss_pred             EEE-EeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEE--cCEe--ecCCC
Q 016718           23 VRF-IWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV--DGEW--RHDEN   85 (384)
Q Consensus        23 v~f-~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiV--DG~w--~~d~~   85 (384)
                      ++| +|...|++|+|+|+||+ ....+|.+.+ ..|.|++.+++..|.. |||.|  ||.+  ..||.
T Consensus        30 ~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~-~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPy   94 (726)
T PRK05402         30 LVVRALLPGAEEVWVILPGGG-RKLAELERLH-PRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPY   94 (726)
T ss_pred             EEEEEECCCCeEEEEEeecCC-CccccceEcC-CCceEEEEecCCCCCC-eEEEEEeCCceeEecccc
Confidence            455 48889999999999996 3446898753 3799999999777742 55555  7854  56654

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=95.57  E-value=0.1  Score=43.76  Aligned_cols=87  Identities=21%  Similarity=0.317  Sum_probs=56.0

Q ss_pred             eEEEEEee----CCCceEEEEecCCCCCCC-----CCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcCE-----------
Q 016718           21 VPVRFIWP----NGGRRVSLSGSFTRWSEP-----MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE-----------   79 (384)
Q Consensus        21 ~~v~f~w~----~~~~~V~v~GsF~~W~~~-----~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiVDG~-----------   79 (384)
                      +.|||-|+    .....+.|.|+.|+++..     ..|++.++ ..+|..++.||.+ +-.|+|+.+-.           
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r   80 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR   80 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence            46999999    345779999999998642     46777653 6899999999998 78999997533           


Q ss_pred             -----eecCCCCCeee-CC---CCCeeeEEEeccCCCCC
Q 016718           80 -----WRHDENQPHVS-GN---YGVVNCVYIAVPQPDMV  109 (384)
Q Consensus        80 -----w~~d~~~p~~~-d~---~G~~nNvi~v~~~~~~~  109 (384)
                           -+.||-||... ..   .|...++++. .++..+
T Consensus        81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~L-p~Ap~q  118 (122)
T PF11806_consen   81 AILAQAQADPLNPRPWPNGAQDRGNAASVLEL-PDAPPQ  118 (122)
T ss_dssp             HHGGG-B--TTSSSEEE-TT---SSEEEEEE--TTS---
T ss_pred             HHHhccCCCCCCCCCCCCCccccccccCceeC-CCCccC
Confidence                 36788888753 33   4889999999 554433

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>PLN02316 synthase/transferase

Probab=95.42  E-value=0.047  Score=61.00  Aligned_cols=82  Identities=15%  Similarity=0.116  Sum_probs=60.4

Q ss_pred             CCCCCCCCCCCCCCCCCceeEEEEEeeC----CCceEEEEecCCCCCCC---CCCCCCCCCCCeEEEEEecCCceEEEEE
Q 016718            2 YNSGLNTGHENSGVVGSILVPVRFIWPN----GGRRVSLSGSFTRWSEP---MPMSPSEGCPAVFQIICRLPPGHHQYKF   74 (384)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~v~f~w~~----~~~~V~v~GsF~~W~~~---~~m~~~~~~~~~~~~~~~L~~G~y~YkF   74 (384)
                      |-.|+-|+-++........+.+.|.-..    +..+|.|.|.||+|.-.   .+|.+.+..+++|++++.+|++-|..-|
T Consensus       137 ~~~~~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldf  216 (1036)
T PLN02316        137 FSRGNKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDF  216 (1036)
T ss_pred             cCCCCeEEeccccccCCCeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEE
Confidence            3457777777777766655555554433    24789999999999864   3677765457899999999999999999


Q ss_pred             EE-cCEeecC
Q 016718           75 YV-DGEWRHD   83 (384)
Q Consensus        75 iV-DG~w~~d   83 (384)
                      +. ||.-.+|
T Consensus       217 Vf~~g~~~yD  226 (1036)
T PLN02316        217 VFFNGQNVYD  226 (1036)
T ss_pred             EEeCCccccc
Confidence            98 7744333

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.36  E-value=0.043  Score=44.22  Aligned_cols=54  Identities=30%  Similarity=0.602  Sum_probs=39.2

Q ss_pred             EEEEeeC---CCceEEEEecC---CCCCCC--CCCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 016718           23 VRFIWPN---GGRRVSLSGSF---TRWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        23 v~f~w~~---~~~~V~v~GsF---~~W~~~--~~m~~~~-~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      ++|.-.+   .|++++|+|+-   .+|+..  .+|.... .....|++++.+|++ .++|||+|
T Consensus         2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815           2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            4555443   48999999985   479764  5785421 123489999999998 49999999

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=94.96  E-value=0.29  Score=40.43  Aligned_cols=50  Identities=22%  Similarity=0.454  Sum_probs=37.5

Q ss_pred             eeCCCceEEEEec---CCCCCCC--CCCCCCC-----CCCCeEEEEEecCCc----eEEEEEEE
Q 016718           27 WPNGGRRVSLSGS---FTRWSEP--MPMSPSE-----GCPAVFQIICRLPPG----HHQYKFYV   76 (384)
Q Consensus        27 w~~~~~~V~v~Gs---F~~W~~~--~~m~~~~-----~~~~~~~~~~~L~~G----~y~YkFiV   76 (384)
                      +-..+++++|+|+   +.+|+..  ++|....     .....|++++.||++    .++|||+.
T Consensus        11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          11 FADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             ecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            3346899999998   4589965  4676541     124579999999996    69999998

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.93  E-value=0.048  Score=56.82  Aligned_cols=123  Identities=15%  Similarity=0.184  Sum_probs=89.4

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh-cccCC-C--Ccc-----
Q 016718          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FKHSS-S--SLP-----  325 (384)
Q Consensus       255 ~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~-~~~~~-~--~~~-----  325 (384)
                      ++|++|++++..-+.+...+..|.....+..||+|+- +.+..++|.|+|=.+.++..|-.. +.+.. +  .++     
T Consensus       586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~-~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~  664 (762)
T KOG0474|consen  586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEP-PSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKF  664 (762)
T ss_pred             hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCC-CCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcC
Confidence            4689999999999999999999999999999999962 221113899999999999988754 22110 0  011     


Q ss_pred             ----cc--cccccccccccccc----ccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          326 ----IL--QQPVSSIQLGTWVP----RIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       326 ----~~--~~~v~~l~ig~~~~----~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                          +.  ..+++++.+.+...    ...+.|.....||.+++++..++.++.+-|++++-|+
T Consensus       665 ~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv  727 (762)
T KOG0474|consen  665 TFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVV  727 (762)
T ss_pred             CHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEe
Confidence                11  11333333322111    1256788889999999999999999999999999886

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.51  E-value=0.076  Score=51.56  Aligned_cols=111  Identities=17%  Similarity=0.236  Sum_probs=78.7

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .++.++|-.-...+.-.....-..|.+.+...+...+-+++ ..++++|+++..+.+..                     
T Consensus       274 ltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~---------------------  331 (386)
T COG4175         274 LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA---------------------  331 (386)
T ss_pred             eeHHHhhcccccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc---------------------
Confidence            46777775311111112222335688888888888888888 56789999976665321                     


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                                           .+..++.++.+++++.+.+....+.. ..+||+|+   +|   +++|+|+...++.+|+
T Consensus       332 ---------------------~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde---~~---r~vG~i~~~~vl~aL~  383 (386)
T COG4175         332 ---------------------ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDE---DG---RYVGIISRGELLEALA  383 (386)
T ss_pred             ---------------------cccccccccCccchHHHHHHHHhcCC-CceeEEcC---CC---cEEEEecHHHHHHHHh
Confidence                                 02467788999999999998888765 56788873   46   8999999999999987


Q ss_pred             h
Q 016718          315 R  315 (384)
Q Consensus       315 ~  315 (384)
                      .
T Consensus       384 ~  384 (386)
T COG4175         384 R  384 (386)
T ss_pred             c
Confidence            5

>TIGR02104 pulA_typeI pullulanase, type I

Probab=94.00  E-value=0.14  Score=54.64  Aligned_cols=64  Identities=19%  Similarity=0.264  Sum_probs=45.0

Q ss_pred             EEEE-eeCCCceEEEEecCCCCCC-----CCCCCCCCCCCCeEEEEEe-cCCce-EEEEEEEcCE--eecCCCCCee
Q 016718           23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVDGE--WRHDENQPHV   89 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~GsF~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~G~-y~YkFiVDG~--w~~d~~~p~~   89 (384)
                      +.|+ |...+++|.|++ |++|..     .++|.+..  +|+|++.++ +.+|. |.|++..+|.  ++.||.....
T Consensus        21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~--~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~   94 (605)
T TIGR02104        21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGE--NGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAV   94 (605)
T ss_pred             eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCC--CCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCccee
Confidence            6776 666799999998 888853     35888753  799999987 45563 4444444565  4788876543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=93.92  E-value=0.081  Score=41.64  Aligned_cols=61  Identities=23%  Similarity=0.480  Sum_probs=37.5

Q ss_pred             EEEEEeeC------CCceEEEEecCCCCCCC--CCCCCCC--CCCCeEEEEEecCCceEEEEEEE-cC--Eeec
Q 016718           22 PVRFIWPN------GGRRVSLSGSFTRWSEP--MPMSPSE--GCPAVFQIICRLPPGHHQYKFYV-DG--EWRH   82 (384)
Q Consensus        22 ~v~f~w~~------~~~~V~v~GsF~~W~~~--~~m~~~~--~~~~~~~~~~~L~~G~y~YkFiV-DG--~w~~   82 (384)
                      ++++.|..      ++.+|++.+.|++|+..  +.|.+..  ...+.|++++.+|..-|+..|.. ||  .|-.
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN   76 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN   76 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence            45666632      36889999999999975  3566532  12689999999999988888888 65  5644

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>PLN02950 4-alpha-glucanotransferase

Probab=92.64  E-value=1.2  Score=49.65  Aligned_cols=71  Identities=20%  Similarity=0.385  Sum_probs=52.2

Q ss_pred             CCCceeEEEEEeeC----CCceEEEEecC---CCCCCC--CCCCCCCCCCCeEEEEEecCCc--eEEEEEEE---cC--E
Q 016718           16 VGSILVPVRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV---DG--E   79 (384)
Q Consensus        16 ~~~~~~~v~f~w~~----~~~~V~v~GsF---~~W~~~--~~m~~~~~~~~~~~~~~~L~~G--~y~YkFiV---DG--~   79 (384)
                      .++..++++|....    .|++|+|+|+-   .+|++.  .+|...  ....|++++.+|++  ..+|||++   +|  .
T Consensus       148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~--~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~  225 (909)
T PLN02950        148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYT--GDSIWEADCLVPKSDFPIKYKYALQTAEGLVS  225 (909)
T ss_pred             CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccC--CCCcEEEEEEecCCCceEEEEEEEEcCCCceE
Confidence            34566888998754    47999999985   489964  467653  36789999999988  49999998   34  4


Q ss_pred             eecCCCCCe
Q 016718           80 WRHDENQPH   88 (384)
Q Consensus        80 w~~d~~~p~   88 (384)
                      |-..++.-.
T Consensus       226 WE~g~NR~~  234 (909)
T PLN02950        226 LELGVNREL  234 (909)
T ss_pred             EeeCCCcee
Confidence            655555433

>PLN02950 4-alpha-glucanotransferase

Probab=92.34  E-value=1  Score=50.16  Aligned_cols=60  Identities=27%  Similarity=0.486  Sum_probs=44.7

Q ss_pred             CCceeEEEEEeeC---CCceEEEEecCC---CCCCC--CCCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 016718           17 GSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        17 ~~~~~~v~f~w~~---~~~~V~v~GsF~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      .+..+.++|.-+.   -|++|+|+|+-.   +|+..  .+|.... ..+..|++++.||+| ..+|||++
T Consensus         5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~   74 (909)
T PLN02950          5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV   74 (909)
T ss_pred             CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence            4455777777654   489999999974   79864  5786532 123489999999998 59999995

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=92.00  E-value=0.95  Score=45.99  Aligned_cols=89  Identities=25%  Similarity=0.317  Sum_probs=60.2

Q ss_pred             CCceeEEEEEeeCC-C-------ceEEEEe--cCC--CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEc---C--
Q 016718           17 GSILVPVRFIWPNG-G-------RRVSLSG--SFT--RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G--   78 (384)
Q Consensus        17 ~~~~~~v~f~w~~~-~-------~~V~v~G--sF~--~W~~~~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiVD---G--   78 (384)
                      ....+.|||-|+++ +       +.|+|-+  ..+  .+.....|.+-.+ ..+|..++.||.. +-.|+|++.   +  
T Consensus        35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~~~~~~~~  113 (411)
T PRK10439         35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIPTERDDIF  113 (411)
T ss_pred             CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEeccccccc
Confidence            34568999999973 2       3588732  222  1333346888764 7899999999998 799999982   1  


Q ss_pred             -----------------------EeecCCCCCeee-CCCCCeeeEEEeccCCC
Q 016718           79 -----------------------EWRHDENQPHVS-GNYGVVNCVYIAVPQPD  107 (384)
Q Consensus        79 -----------------------~w~~d~~~p~~~-d~~G~~nNvi~v~~~~~  107 (384)
                                             .-+.||.||... +..|+..|++++ ..+.
T Consensus       114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l-p~a~  165 (411)
T PRK10439        114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM-PQAP  165 (411)
T ss_pred             cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC-CCCC
Confidence                                   114788888654 445655689988 5443

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=91.81  E-value=3.4  Score=44.54  Aligned_cols=59  Identities=14%  Similarity=0.158  Sum_probs=50.1

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC-CCeEEEEeehHHHHHHHH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILR  215 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~-~~~~vGilT~~Dli~~l~  215 (384)
                      ..+.++|  -++|..|..++|.+|.-++|...-++++|++|+. ..-++|.|.++.|...|.
T Consensus       588 v~VE~iM--V~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~  647 (931)
T KOG0476|consen  588 VKVEHIM--VTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ  647 (931)
T ss_pred             EEeeeec--cccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence            4466888  5678899999999999999998889999999974 346889999999998764

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=90.48  E-value=0.64  Score=50.37  Aligned_cols=55  Identities=22%  Similarity=0.467  Sum_probs=39.9

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCC----CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCEe
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSE----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~----~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~w   80 (384)
                      .+.|+ |...|++|.|+ -|++|..    .++|.+..  +|+|++.+. +.+|. .|+|.|+|.|
T Consensus        15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~yrv~g~~   75 (688)
T TIGR02100        15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERT--DDIWHGYLPGAQPGQ-LYGYRVHGPY   75 (688)
T ss_pred             cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCC--CCEEEEEECCCCCCC-EEEEEEeeee
Confidence            46776 56678999986 5565542    35787743  799999986 67776 4999999853

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PLN02316 synthase/transferase

Probab=90.27  E-value=1.1  Score=50.58  Aligned_cols=58  Identities=14%  Similarity=0.295  Sum_probs=43.2

Q ss_pred             eEEEEEeeC------CCceEEEEecCCCCCCCC----CCCCCC-CCCCeEEEEEecCCceEEEEEEE-cC
Q 016718           21 VPVRFIWPN------GGRRVSLSGSFTRWSEPM----PMSPSE-GCPAVFQIICRLPPGHHQYKFYV-DG   78 (384)
Q Consensus        21 ~~v~f~w~~------~~~~V~v~GsF~~W~~~~----~m~~~~-~~~~~~~~~~~L~~G~y~YkFiV-DG   78 (384)
                      -++++.|..      ++.+|++.|.||+|+...    .|.+.+ ..++.|.+++.+|+.-|-.-|+. ||
T Consensus       329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg  398 (1036)
T PLN02316        329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADG  398 (1036)
T ss_pred             CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence            456666652      358999999999999642    222322 23569999999999999999998 66

>PLN02960 alpha-amylase

Probab=90.13  E-value=0.48  Score=52.00  Aligned_cols=54  Identities=28%  Similarity=0.491  Sum_probs=39.7

Q ss_pred             EEEEEeeCCCceEEEEecCCCCCCCC-CCC-----CCCCCCCeEEEEEe--cCCce-------EEEEEEEc
Q 016718           22 PVRFIWPNGGRRVSLSGSFTRWSEPM-PMS-----PSEGCPAVFQIICR--LPPGH-------HQYKFYVD   77 (384)
Q Consensus        22 ~v~f~w~~~~~~V~v~GsF~~W~~~~-~m~-----~~~~~~~~~~~~~~--L~~G~-------y~YkFiVD   77 (384)
                      -.-..|..+|+.+.|+|+||||+++. .|.     +++  -|+|.++++  |..|+       -||.|..|
T Consensus       130 ~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        130 VDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDD--FGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             eEEEEEcCCceeEEEeecccCCCcccchhhcccccccc--cceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            33456999999999999999999874 454     544  689998874  66652       25666664

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=90.02  E-value=0.77  Score=52.09  Aligned_cols=64  Identities=13%  Similarity=0.198  Sum_probs=45.9

Q ss_pred             EEEE-eeCCCceEEEEe-cCCCCCC---CCCCCCCCCCCCeEEEEEe-cCCc-----eEEEEEEEcC----EeecCCCCC
Q 016718           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICR-LPPG-----HHQYKFYVDG----EWRHDENQP   87 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~G-sF~~W~~---~~~m~~~~~~~~~~~~~~~-L~~G-----~y~YkFiVDG----~w~~d~~~p   87 (384)
                      ++|+ |...|++|.|++ ++++|..   .++|.+..  .|+|++.++ +.+|     -+.|+|.|++    ....||...
T Consensus       329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~--~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~  406 (1111)
T TIGR02102       329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGD--RGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK  406 (1111)
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCC--CCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence            6676 677899999998 4556754   46898754  899999987 4432     3688888865    456777655


Q ss_pred             e
Q 016718           88 H   88 (384)
Q Consensus        88 ~   88 (384)
                      .
T Consensus       407 a  407 (1111)
T TIGR02102       407 S  407 (1111)
T ss_pred             E
Confidence            3

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=90.01  E-value=10  Score=36.15  Aligned_cols=135  Identities=12%  Similarity=0.110  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHH--
Q 016718          136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI--  213 (384)
Q Consensus       136 ~s~~~~e~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~--  213 (384)
                      +++..++.+...+++-++.           .+|.+..|  +.||+++-     ..+-|.|  .|+++=.=|..+++..  
T Consensus       169 I~R~~lQ~e~~~lq~~l~k-----------TivfVTHD--idEA~kLa-----dri~vm~--~G~i~Q~~~P~~il~~Pa  228 (309)
T COG1125         169 ITRKQLQEEIKELQKELGK-----------TIVFVTHD--IDEALKLA-----DRIAVMD--AGEIVQYDTPDEILANPA  228 (309)
T ss_pred             hhHHHHHHHHHHHHHHhCC-----------EEEEEecC--HHHHHhhh-----ceEEEec--CCeEEEeCCHHHHHhCcc
Confidence            6777777777777666653           34455554  77999863     4566776  5888888886666531  


Q ss_pred             ---HHHhccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEec
Q 016718          214 ---LRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS  290 (384)
Q Consensus       214 ---l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~  290 (384)
                         +..+....    +..+..+.+....+.....            ....--.+.......+++..+...+...+||+|.
T Consensus       229 n~FV~~f~g~~----~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~  292 (309)
T COG1125         229 NDFVEDFFGES----ERGLRLLSLVSVADAVRRG------------EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDE  292 (309)
T ss_pred             HHHHHHHhccc----cccccccchhhHHHhhccc------------ccccCCccccchhhHHHHHHHHhcCCceeEEECC
Confidence               11111000    0000111111111111000            0001112334445556889999999999999984


Q ss_pred             CCCCCCcccEEEEeeHHHHHHH
Q 016718          291 TGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       291 ~~~~g~~~~lvGiit~~dil~~  312 (384)
                         +|   +++|.||+.+++..
T Consensus       293 ---~g---~~~G~vt~~~l~~~  308 (309)
T COG1125         293 ---DG---RPLGTVTRADLLDE  308 (309)
T ss_pred             ---CC---cEeeEEEHHHHhhh
Confidence               47   89999999999865

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=89.96  E-value=2.7  Score=44.33  Aligned_cols=115  Identities=10%  Similarity=0.058  Sum_probs=79.1

Q ss_pred             CceEeCCC-CCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCC----ccccccccccc
Q 016718          260 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LPILQQPVSSI  334 (384)
Q Consensus       260 ~~itv~~~-~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~----~~~~~~~v~~l  334 (384)
                      ++++++.+ .++.|...+|.+......||+=+ ++..   +++|++..+|+.-.+.... ...++    ...+.++..+.
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar-~~q~~~~~~~~~f~~~~~~~  631 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNAR-KIQSFIVTTSIYFNDPSPSA  631 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhc-cccccceecccccCCCCccc
Confidence            36666665 79999999999999999999864 3333   8999999999998876321 11111    11333333322


Q ss_pred             ccccccc-ccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          335 QLGTWVP-RIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       335 ~ig~~~~-~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                      ..+.-.+ ....++...+.|+..++|..-+++++.+-+++.+-|..
T Consensus       632 ~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~  677 (696)
T KOG0475|consen  632 VAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK  677 (696)
T ss_pred             cCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc
Confidence            2222111 12346677889999999999999999999998877653

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=88.05  E-value=2.3  Score=47.34  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=44.8

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc------CE----eecCCCCC
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQP   87 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~--~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVD------G~----w~~d~~~p   87 (384)
                      .++|+ |...+++|.|++.+++|.  ..++|.+.+ ..|+|++.+. ...|. .|+|.|+      |+    ...||...
T Consensus       136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~  213 (898)
T TIGR02103       136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV  213 (898)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence            46675 777899999997766664  236898752 3799999986 34454 4666664      53    36777665


Q ss_pred             ee
Q 016718           88 HV   89 (384)
Q Consensus        88 ~~   89 (384)
                      ..
T Consensus       214 al  215 (898)
T TIGR02103       214 SL  215 (898)
T ss_pred             eE
Confidence            44

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=87.88  E-value=0.91  Score=45.68  Aligned_cols=47  Identities=19%  Similarity=0.260  Sum_probs=40.1

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHH
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~  215 (384)
                      .+.++.++++|.+++..+.+.+.. +||+| + |+++|+|+..+++.+|.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHh
Confidence            356889999999999999888755 78888 3 89999999999988764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=87.43  E-value=1.4  Score=43.65  Aligned_cols=92  Identities=10%  Similarity=0.140  Sum_probs=71.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      .++.+..+..|++..++++.+...-..|+|+..++ - .   +++||+-.+|+++++.+.-. +       ++    ..+
T Consensus       208 pR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~-~-D---nIiGvlh~r~llr~l~e~~~-~-------~k----~d~  270 (423)
T COG4536         208 PRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD-L-D---NIIGVLHVRDLLRLLNEKNE-F-------TK----EDI  270 (423)
T ss_pred             cccceeeecCCCCHHHHHHHHhhCCCCceeeecCC-h-h---HhhhhhhHHHHHHHhhccCc-c-------cH----hHH
Confidence            46789999999999999999999999999999742 2 2   69999999999999986421 1       11    111


Q ss_pred             cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCc
Q 016718          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLT  373 (384)
Q Consensus       337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is  373 (384)
                      ....        .++..|++.+|+.+-+..|.+++-+
T Consensus       271 ~~~a--------~epyFVPe~Tpl~~QL~~F~~~k~h  299 (423)
T COG4536         271 LRAA--------DEPYFVPEGTPLSDQLVAFQRNKKH  299 (423)
T ss_pred             HHHh--------cCCeecCCCCcHHHHHHHHHHhcce
Confidence            1111        3678999999999999999877643

>PRK03705 glycogen debranching enzyme; Provisional

Probab=85.79  E-value=1.7  Score=46.83  Aligned_cols=55  Identities=22%  Similarity=0.441  Sum_probs=39.7

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCEe
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~--~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~w   80 (384)
                      -+.|+ |...|++|.|+. |+++.  ..++|.+..  +|+|++.++ +.+|. .|+|.|+|.|
T Consensus        20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~G~-~Y~yrv~g~~   78 (658)
T PRK03705         20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARS--GDIWHGYLPGARPGL-RYGYRVHGPW   78 (658)
T ss_pred             CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeecc--CCEEEEEECCCCCCC-EEEEEEcccc
Confidence            36776 566789999997 76653  236887643  799999986 55564 5999998843

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=84.20  E-value=1.5  Score=47.18  Aligned_cols=59  Identities=10%  Similarity=0.081  Sum_probs=52.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK  318 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~  318 (384)
                      +|-+++.++..+.+..|..+.+....++.+|+||+ .++-   -|+|.|..+.+.++|-+|..
T Consensus       593 iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~ig  651 (931)
T KOG0476|consen  593 IMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRHIG  651 (931)
T ss_pred             eccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhhcC
Confidence            58999999999999999999998888999999996 3434   79999999999999988653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=81.73  E-value=2.1  Score=40.67  Aligned_cols=40  Identities=20%  Similarity=0.427  Sum_probs=34.3

Q ss_pred             CccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHH
Q 016718          173 NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (384)
Q Consensus       173 ~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~  213 (384)
                      .....+|+.-+...+...+||+|+ +|+++|.||..|+++.
T Consensus       269 ~~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~~  308 (309)
T COG1125         269 GFVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLDE  308 (309)
T ss_pred             chhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhhh
Confidence            344567899999999999999996 7999999999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		4e-18
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		3e-14
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		7e-14
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		5e-13
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		5e-12
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		5e-12
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		4e-11
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		1e-10
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		1e-10
3nme_A	294	Structure Of A Plant Phosphatase Length = 294		2e-06

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135
Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189
Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQ 221

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPD 107
           HD ++P V+   G VN + I V + D
Sbjct: 68  HDPSEPIVTSQLGTVNNI-IQVKKTD 92

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P + S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSK-LPXTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPD 107
           HD ++P V+   G VN + I V + D
Sbjct: 68  HDPSEPIVTSQLGTVNNI-IQVKKTD 92

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
          P    W  GG+ V +SGSF  WS  +P+  S      F  I  LP G HQYKF+VDG+W 
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHN---DFVAILDLPEGEHQYKFFVDGQWV 67
Query: 82 HDENQPHVSGNYGVVN 97
          HD ++P V+   G +N
Sbjct: 68 HDPSEPVVTSQLGTIN 83

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 14/192 (7%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 15  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DF+ +++      S+  E        +  ++ K +L   R+++      P   +   P 
Sbjct: 75  ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 125
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +L
Sbjct: 126 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 180
Query: 328 QQPVSSIQLGTW 339
           + P++ + +GTW
Sbjct: 181 RVPLNQMTIGTW 192

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 14/192 (7%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 14  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DF+ +++      S+  E        +  ++ K +L   R+++      P   +   P 
Sbjct: 74  ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 124
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +L
Sbjct: 125 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 179
Query: 328 QQPVSSIQLGTW 339
           + P++ + +GTW
Sbjct: 180 RVPLNQMTIGTW 191

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 18  SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
           S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 78  GEWRHDENQPHVSGNYG-VVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQY 136
            E R  +  P  +   G  VN  YI V QP+  P     E   + E D   MRP    + 
Sbjct: 61  NELRVSDFLPTATDQMGNFVN--YIEVRQPEKNPTN---EKIRSKEADS--MRPPTSDRS 113
Query: 137 SEADLQLSRD 146
           S A LQ+ +D
Sbjct: 114 SIA-LQIGKD 122

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 30/156 (19%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 17  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 77  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 124
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPII 288
                 RPL +A          LK+L+++   +P+I
Sbjct: 125 ASIHPSRPLFEA---------CLKMLESRSGRIPLI 151

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 30/156 (19%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 10  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 70  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 117
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPII 288
                 RPL +A          LK+L+++   +P+I
Sbjct: 118 ASIHPSRPLFEA---------CLKMLESRSGRIPLI 144

>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase Length = 294

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 29  NGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQP 87
            G  RV +SG    W + +P++  +G    F I+ R LP G  +YK+ +DGEW H+E +P
Sbjct: 179 KGFSRVEISGLDIGWGQRIPLTLGKGTG--FWILKRELPEGQFEYKYIIDGEWTHNEAEP 236
Query: 88  HVSGNY-GVVNCVYIAVPQPDMVPNTISPETS 118
            +  N  G  N     V  P  V  T     S
Sbjct: 237 FIGPNKDGHTNNYAKVVDDPTSVDGTTRERLS 268

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	5e-43
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	9e-05
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-35
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-06
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	6e-34
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	9e-07
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	2e-29
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	7e-26
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	1e-25
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	8e-12
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	6e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-06
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	5e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  151 bits (384), Expect = 5e-43
 Identities = 46/233 (19%), Positives = 97/233 (41%), Gaps = 25/233 (10%)

Query: 138 EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF 197
           +   + +   I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD  
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE 64

Query: 198 KGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRP 256
             +F G+L+  DF+ +++    + S      E++   +   +  + ++            
Sbjct: 65  ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAI--------- 115

Query: 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316
            P   +   P  SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  +
Sbjct: 116 -PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMN 173

Query: 317 FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
            K       +L+ P++ + +GTW                    +   + +L +
Sbjct: 174 CKE----TAMLRVPLNQMTIGTWSNLA---------TASMETKVYDVIKMLAE 213

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 36/142 (25%)

Query: 176 VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232
           V     +L E+    +P+V    + +G  + V  ++D + ++++   +  +L+  E    
Sbjct: 204 VYDVIKMLAEKNISAVPIV----NSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLK 259

Query: 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 292
                                       +      D L  +   I  ++V  + ++    
Sbjct: 260 R---------------------PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENL 298

Query: 293 -PAGSCQEILYLASLSDILKCI 313
              G       + SL+DIL  I
Sbjct: 299 KLEG-------ILSLADILNYI 313

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  130 bits (327), Expect = 7e-35
 Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 30/242 (12%)

Query: 128 MRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQG 187
             PE   ++S+   + +    ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G
Sbjct: 10  PAPEN--EHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNG 67

Query: 188 LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247
           +   PLWD  K  FVG+L+  DFI IL     + + +   ELE H I  W+   LQ    
Sbjct: 68  VRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWREVYLQD--- 123

Query: 248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 307
                      +PLV   P  SL +    +++NK+  +P+I            LY+ +  
Sbjct: 124 ---------SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-----ESGNTLYILTHK 169

Query: 308 DILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
            ILK +             + + +  +Q+GT+            AM+R T  +  AL + 
Sbjct: 170 RILKFLKLFITEFPKP-EFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIF 219

Query: 368 VQ 369
           VQ
Sbjct: 220 VQ 221

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 43/185 (23%)

Query: 143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLA-------------VKQAFHVLYEQGLP 189
           L+  RI  FL         P+    +  ++ +              V  A  +  +  + 
Sbjct: 166 LTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVS 225

Query: 190 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 249
            +P+ D+ KGR V + S  D I +  E   N  +++  +   H                 
Sbjct: 226 ALPVVDE-KGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH----------------- 267

Query: 250 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSD 308
                      +++   +++L+ +  ++++ +V  + ++       G    I+   SLSD
Sbjct: 268 ----RSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKG----IV---SLSD 316

Query: 309 ILKCI 313
           IL+ +
Sbjct: 317 ILQAL 321

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  127 bits (320), Expect = 6e-34
 Identities = 49/240 (20%), Positives = 100/240 (41%), Gaps = 26/240 (10%)

Query: 130 PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 189
            +   +    + QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  + 
Sbjct: 5   TQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIV 64

Query: 190 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 249
             PLWD    RF G+L+  DFI +++   +N      E ++   +   K  +  L +   
Sbjct: 65  SAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERALGVD-- 120

Query: 250 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 309
                           P   L E  LK+L+++   +P+I         + ++ + +   I
Sbjct: 121 --------QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRI 171

Query: 310 LKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
           LK +  + + +      L+ P+  + + T                + T  +   + +L Q
Sbjct: 172 LKFVALNCRET----HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQ 218

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 49.2 bits (117), Expect = 9e-07
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 30/139 (21%)

Query: 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235
           V     +L +  +  VP+ D+  G  + V  A D + +++    N  +L+  E       
Sbjct: 209 VIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRR-- 265

Query: 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PA 294
                                    +      D L  +   I + +V    ++   G   
Sbjct: 266 -------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLV 306

Query: 295 GSCQEILYLASLSDILKCI 313
           G       + +LSDILK I
Sbjct: 307 G-------VLTLSDILKYI 318

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score =  113 bits (283), Expect = 2e-29
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 1/139 (0%)

Query: 18  SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
           S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 78  GEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYS 137
            E R  +  P  +   G     YI V QP+  P      +     +          A   
Sbjct: 61  NELRVSDFLPTATDQMGNFVN-YIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQI 119

Query: 138 EADLQLSRDRISSFLSTHT 156
             D     D  + F    +
Sbjct: 120 GKDPDDFGDGYTRFHEDLS 138

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 99.2 bits (247), Expect = 7e-26
 Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query: 11  ENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHH 70
           E +    +   P  F W  GG+ V LSGSF  WS  +PM+ S+     F  I  LP G H
Sbjct: 1   EVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQN---NFVAILDLPEGEH 56

Query: 71  QYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM 108
           QYKF+VDG+W HD ++P V+   G VN + I V + D 
Sbjct: 57  QYKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDF 93

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score =  104 bits (259), Expect = 1e-25
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 25  FIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDE 84
            +   G  RV +SG    W + +P++  +G    + +   LP G  +YK+ +DGEW H+E
Sbjct: 175 TLKDKGFSRVEISGLDIGWGQRIPLTLGKG-TGFWILKRELPEGQFEYKYIIDGEWTHNE 233

Query: 85  NQPHVSGN-YGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQL 143
            +P +  N  G  N  Y  V      P ++   T   +  +D  +  E            
Sbjct: 234 AEPFIGPNKDGHTN-NYAKVVDD---PTSVDGTTRERLSSEDPELLEE------------ 277

Query: 144 SRDRISSFLSTHTVYEL 160
            R ++  FL T +  E+
Sbjct: 278 ERSKLIQFLETCSEAEV 294

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 65.6 bits (160), Expect = 8e-12
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 12 NSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICRLPPGHH 70
            G  G  +V     WP   + + L G FT      + +   E       +  +L PG +
Sbjct: 11 GKGRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEE---QGIVYLKLWPGEY 67

Query: 71 QYKFYVDGEWR 81
           Y F +D ++ 
Sbjct: 68 GYGFQIDNDFE 78

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 20/183 (10%), Positives = 59/183 (32%), Gaps = 23/183 (12%)

Query: 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223
           + K+  +     +++A   + E     +P+ +    + VG+++++D +  +         
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70

Query: 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 283
             + E          V ++       M          ++       + E     L   V 
Sbjct: 71  REKHERNFLAAINEPVREI-------M-------EENVITLKENADIDEAIETFLTKNVG 116

Query: 284 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 343
             PI++         +++ L +  D+++ +      +      + + V     G    R+
Sbjct: 117 GAPIVNDEN------QLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGE---RL 167

Query: 344 GEA 346
            + 
Sbjct: 168 KDV 170

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 27/139 (19%)

Query: 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235
           +K     +   G   +P+  +  GR VG++++ D    ++ LG++ +    +      I+
Sbjct: 167 LKDVARTMVRNGFRRLPVVSE--GRLVGIITSTD---FIKLLGSDWAFNHMQTGNVREIT 221

Query: 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PA 294
             ++ ++                R ++ A   D LK++A  ++ N +  +P++       
Sbjct: 222 NVRMEEI--------------MKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIK 267

Query: 295 GSCQEILYLASLSDILKCI 313
           G    I+   +  D+LK  
Sbjct: 268 G----II---TEKDVLKYF 279

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 11/154 (7%)

Query: 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI-LILRELGTNGSNL 224
            V+ +     +K A   L       +P+  D +G  VG++   D +           + L
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPV-VDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 193

Query: 225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRP-CPRPLVQAGPYDSLKEVALKILQNKVA 283
                E   + +      +    +  +        R ++ A P+ ++ EVALK+ +  + 
Sbjct: 194 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 284 TVPIIHSTG-PAGSCQEILYLASLSDILKCICRH 316
            +P+I   G   G    ++      D+LK + + 
Sbjct: 254 QLPVIRGEGDLIG----LIR---DFDLLKVLVKS 280

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 34/163 (20%)

Query: 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215
            V +L+  S KV  + +   ++ A  VL + G   +P+ D    +  G++S      IL 
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAM---ILD 71

Query: 216 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVAL 275
            +      L  E +E   +   KV ++       M        + +      DS  +   
Sbjct: 72  GI------LGLERIEFERLEEMKVEQV-------MK-------QDIPVLKLEDSFAKALE 111

Query: 276 KILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 317
             + +    +  ++  G   G    IL   +   ILK + +  
Sbjct: 112 MTIDHPF--ICAVNEDGYFEG----IL---TRRAILKLLNKKV 145

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 18/206 (8%), Positives = 54/206 (26%), Gaps = 48/206 (23%)

Query: 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223
                 L     +  AF  + E G+  + + ++   +  G+L+  D +  +        +
Sbjct: 27  IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCK--DS 81

Query: 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 283
            ++ +L  + IS   +          M           V              ++     
Sbjct: 82  CSQGDL--YHISTTPIIDY-------M-------TPNPVTVYNTSDEFTAINIMVTRNFG 125

Query: 284 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 343
           ++P++          + + + +  + L       +                        +
Sbjct: 126 SLPVVDIND------KPVGIVTEREFLLLYKDLDEIF---------------------PV 158

Query: 344 GEANGRPFAMLRPTASLGSALALLVQ 369
                     +     L  A+ L+++
Sbjct: 159 KVFMSTKVQTIYKEVRLDQAVKLMLR 184

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 24/177 (13%), Positives = 60/177 (33%), Gaps = 34/177 (19%)

Query: 137 SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD 196
           +E +                V   +  S KV  +   + + QA  ++  +G   +P+ DD
Sbjct: 141 TEREF---LLLYKDLDEIFPVKVFM--STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD 195

Query: 197 FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRP 256
              + VG+++ ++    +++L      L  +      +               M      
Sbjct: 196 -DNKVVGIVTVVN---AIKQLAKAVDKLDPDYFYGKVVKD------------VM------ 233

Query: 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313
               LV      S+   A +++  ++ ++ I++          I  + +  D+L  +
Sbjct: 234 -VTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDN------TIRGIITERDLLIAL 283

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 36/142 (25%)

Query: 176 VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232
           V     +L +     +P++    D  G  + V  A D + +++    N  +L+  E    
Sbjct: 30  VIDVIQMLTQGRVSSVPII----DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 85

Query: 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 292
                                       +      D L  +   I + +V    ++   G
Sbjct: 86  R---------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 124

Query: 293 -PAGSCQEILYLASLSDILKCI 313
              G       + +LSDILK I
Sbjct: 125 RLVG-------VLTLSDILKYI 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 47/303 (15%), Positives = 91/303 (30%), Gaps = 100/303 (33%)

Query: 69  HHQYKFYVDGEWRH------DENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNME 122
           HH   F   GE ++         +     N+   +C  +     DM  + +S E     E
Sbjct: 4   HHHMDFET-GEHQYQYKDILSVFEDAFVDNF---DCKDV----QDMPKSILSKE-----E 50

Query: 123 VDDVVMRPEGFAQYSEADLQLSRDRISSFLS--THTVYELLPDSGKVTALDVNLA-VKQA 179
           +D ++M  +         +  +     + LS     V + + +      L +N   +   
Sbjct: 51  IDHIIMSKD--------AVSGTLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSP 97

Query: 180 FHVLYEQ-GLPMV-------PLWDD---FKGRFVGVLSALDFILILRE------------ 216
                 Q  +           L++D   F    V   S L   L LR+            
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALLELRPAKNVL 154

Query: 217 ----LGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGN------GRPCPRPLVQAGP 266
               LG+  + +  +   ++ +            + +MD           C  P      
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKV------------QCKMDFKIFWLNLKN-CNSP------ 195

Query: 267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS--SSL 324
                E  L++LQ  +  +    ++    S    L + S+   L+   R  K     + L
Sbjct: 196 -----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYENCL 247

Query: 325 PIL 327
            +L
Sbjct: 248 LVL 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.95
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.91
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.91
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.9
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.88
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.87
4esy_A	170	CBS domain containing membrane protein; structural	99.86
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.85
3ddj_A	296	CBS domain-containing protein; structural genomics	99.82
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.81
3ddj_A	296	CBS domain-containing protein; structural genomics	99.81
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.78
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.78
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.77
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.77
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.76
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.76
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.76
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.75
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.74
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.74
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.73
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.73
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.73
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.73
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.72
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.72
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.72
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.72
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.72
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.71
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.71
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.71
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.71
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.7
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.7
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.7
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.69
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.69
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.69
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.68
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.68
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.68
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.68
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.67
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.67
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.67
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.67
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.67
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.66
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.66
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.66
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.65
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.65
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.64
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.63
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.59
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.54
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.51
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.51
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.5
4esy_A	170	CBS domain containing membrane protein; structural	99.47
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.44
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.42
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.4
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.4
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.35
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.33
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.31
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.31
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.3
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.3
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.3
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.29
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.28
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.27
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.27
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.26
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.26
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.26
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.26
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.26
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.25
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.24
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.24
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.24
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.23
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.22
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.22
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.22
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.22
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.21
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.21
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.2
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.2
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.2
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.19
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.18
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.18
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.18
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.18
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.17
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.16
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.16
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.14
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.14
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.12
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.11
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.11
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.09
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.09
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.08
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.07
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.05
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.03
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.02
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.96
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.92
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.92
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.91
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.69
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.68
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.66
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.61
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.57
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.51
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.49
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.48
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.47
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.46
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.41
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.33
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.18
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	97.97
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	97.92
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.27
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.27
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.19
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	96.25
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	96.0
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	95.8
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	95.65
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	95.57
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	95.49
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	95.34
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.17
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	95.13
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.12
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	95.09
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	95.04
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	94.91
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	94.56
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	93.89
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	93.74
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	92.99
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	92.21
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	91.59
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	91.42
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	91.22
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	90.88
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	89.95
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	89.13
4fch_A	221	Outer membrane protein SUSE; starch binding, extra	88.12
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	86.68
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	86.61

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.95  E-value=1.9e-27  Score=229.24  Aligned_cols=210  Identities=23%  Similarity=0.366  Sum_probs=164.9

Q ss_pred             HHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 016718          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (384)
Q Consensus       143 ~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~  222 (384)
                      ...+++.+||+.++|||+||.+.++++++.++|+.+|+++|.+++++++||||++.++++|+||.+|++..+.+......
T Consensus        18 ~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~   97 (323)
T 3t4n_C           18 LAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPD   97 (323)
T ss_dssp             HHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcc
Confidence            56788999999999999999999999999999999999999999999999999766799999999999998765543321


Q ss_pred             CCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEE
Q 016718          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (384)
Q Consensus       223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvG  302 (384)
                      .  .+.++.+....+++.+....          .|+++++++.+++++.+|+..|.+++++++||+|++...+ .++++|
T Consensus        98 ~--~~~l~~~~~~~v~~i~~~~~----------~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-~~~l~G  164 (323)
T 3t4n_C           98 K--FELVDKLQLDGLKDIERALG----------VDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-REIVVS  164 (323)
T ss_dssp             G--GGGGGGCBHHHHHHHHHHTT----------C----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-CEEEEE
T ss_pred             h--hHHHHHHHHHHHHHHHHHhC----------CCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-ccceEE
Confidence            1  13344444445555543322          4789999999999999999999999999999998511111 012999


Q ss_pred             EeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++|++|+++++..+...    ..+.++++.++.++         |.++++++.+++++.+|+++|.+++++++||+
T Consensus       165 ivt~~di~~~l~~~~~~----~~~~~~~v~~~~~~---------m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVv  227 (323)
T 3t4n_C          165 VLTQYRILKFVALNCRE----THFLKIPIGDLNII---------TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII  227 (323)
T ss_dssp             EEEHHHHHHHHHHHCGG----GGGCCSBGGGTTCS---------BCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             EecHHHHHHHHHhcCCc----hhhhhCcHHHcCCC---------CCCCcEEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence            99999999999876543    23445555555433         34689999999999999999999999999997

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.91  E-value=2.8e-24  Score=207.83  Aligned_cols=208  Identities=30%  Similarity=0.526  Sum_probs=164.1

Q ss_pred             HHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 016718          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (384)
Q Consensus       143 ~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~  222 (384)
                      .+.+.++.+|+..+|+|+|+.+.+++++++++|+.+|+++|.+++++++||+|++.++++|+||.+|++..+....... 
T Consensus        23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~-  101 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSA-  101 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHH-
T ss_pred             hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhcc-
Confidence            4455799999999999999988999999999999999999999999999999975579999999999998765432110 


Q ss_pred             CCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEE
Q 016718          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (384)
Q Consensus       223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvG  302 (384)
                      .....++....+..+.+...            .+|.++++++.+++++.+|+++|.+++++++||+|.  ++|   +++|
T Consensus       102 ~~~~~~l~~~~~~~~~~~~~------------~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~---~~~G  164 (330)
T 2v8q_E          102 LVQIYELEEHKIETWREVYL------------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLY  164 (330)
T ss_dssp             TTTCCCGGGCBHHHHHHHHS------------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEE
T ss_pred             ccchhHHhhccHHHHHHHHh------------hcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC--CCC---cEEE
Confidence            00012333444444443321            157899999999999999999999999999999972  146   8999


Q ss_pred             EeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +||.+|+++++..+....+ ...++.+++.++.++++         ++++++.+++++.+|+++|.+++++++||+
T Consensus       165 ivt~~dl~~~~~~~~~~~~-~~~~~~~~v~~~~v~~~---------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv  230 (330)
T 2v8q_E          165 ILTHKRILKFLKLFITEFP-KPEFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIFVQHRVSALPVV  230 (330)
T ss_dssp             EECHHHHHHHHHHHSCSSS-CCGGGGSBHHHHTCSBC---------SSCCCEETTCBHHHHHHHHHHHCCSEEEEE
T ss_pred             EEcHHHHHHHHHHHhhccC-chhhhcCCHHHhcccCc---------CCceEECCCCCHHHHHHHHHHcCCCeEEEE
Confidence            9999999999987643321 12345566666654442         478999999999999999999999999997

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.91  E-value=6.7e-23  Score=198.29  Aligned_cols=208  Identities=20%  Similarity=0.344  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccC
Q 016718          141 LQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN  220 (384)
Q Consensus       141 ~e~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~  220 (384)
                      .......+.+||.+.+|+|+|+.+.+++++++++|+.+|+++|.+++++++||+|++.++++|+||.+|++..+......
T Consensus         8 ~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~   87 (334)
T 2qrd_G            8 QKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQS   87 (334)
T ss_dssp             HHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhc
Confidence            34567888999999999999999889999999999999999999999999999997558999999999999877543221


Q ss_pred             CCCC-ChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCc--eEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCc
Q 016718          221 GSNL-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL--VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC  297 (384)
Q Consensus       221 ~~~~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~--itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~  297 (384)
                      .... ..+.++...+..+++....+            |.+++  +++.+++++.+|+++|.+++++++||+|+  .++  
T Consensus        88 ~~~~~~~~~~~~~~~~~i~~~l~~i------------m~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~--  151 (334)
T 2qrd_G           88 SSFPEAIAEIDKFRLLGLREVERKI------------GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV--DGE--  151 (334)
T ss_dssp             CSCGGGGGGGGSCBHHHHHHHHHHH------------TCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEE--ETT--
T ss_pred             cCCccHHHHHhhhchhhHHHHHHhh------------ccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeC--CCC--
Confidence            0000 01223344555565554332            45556  99999999999999999999999999984  222  


Q ss_pred             cc----EEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCc
Q 016718          298 QE----ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLT  373 (384)
Q Consensus       298 ~~----lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is  373 (384)
                       +    ++|+||++|+++++..+...    ..+...++.++.         ..|.++++++++++++.+|+++|.+++++
T Consensus       152 -~~~~~~~Givt~~dl~~~~~~~~~~----~~~~~~~v~~l~---------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~  217 (334)
T 2qrd_G          152 -TGSEMIVSVLTQYRILKFISMNCKE----TAMLRVPLNQMT---------IGTWSNLATASMETKVYDVIKMLAEKNIS  217 (334)
T ss_dssp             -TTEEEEEEEEEHHHHHHHHHHHCGG----GGGCCCBGGGSS---------CSBCSSCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             -cCccceEEEeeHHHHHHHHHhhccc----hhhhhCcHHHhC---------CcccCCceEECCCCcHHHHHHHHHHcCCc
Confidence             3    99999999999998865322    112333443321         12457899999999999999999999999


Q ss_pred             eeeec
Q 016718          374 LFQQP  378 (384)
Q Consensus       374 ~lPV~  378 (384)
                      ++||+
T Consensus       218 ~~~Vv  222 (334)
T 2qrd_G          218 AVPIV  222 (334)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.90  E-value=1.8e-23  Score=167.39  Aligned_cols=86  Identities=43%  Similarity=0.835  Sum_probs=77.1

Q ss_pred             CCCceeEEEEEeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCeeeCCCCC
Q 016718           16 VGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGV   95 (384)
Q Consensus        16 ~~~~~~~v~f~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~~d~~G~   95 (384)
                      ..+.+++++|+|..+|++|+|+|+||+|+ .++|.++   .|.|++++.|++|.|+|||+|||+|++||.+|++.|+.|+
T Consensus         6 ~~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~---~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~   81 (96)
T 1z0n_A            6 APAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGT   81 (96)
T ss_dssp             ----CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSC
T ss_pred             CCCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC---CCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCCC
Confidence            34567999999999999999999999999 7899984   4799999999999999999999999999999999999999


Q ss_pred             eeeEEEeccCC
Q 016718           96 VNCVYIAVPQP  106 (384)
Q Consensus        96 ~nNvi~v~~~~  106 (384)
                      .||+|.| ..+
T Consensus        82 ~Nnvi~V-~~~   91 (96)
T 1z0n_A           82 VNNIIQV-KKT   91 (96)
T ss_dssp             EEEEEEE-CSC
T ss_pred             EeEEEEE-cCC
Confidence            9999999 543

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.88  E-value=6.1e-23  Score=191.42  Aligned_cols=88  Identities=32%  Similarity=0.663  Sum_probs=80.4

Q ss_pred             ceeEEEEEeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCeeeCCCCCeee
Q 016718           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNC   98 (384)
Q Consensus        19 ~~~~v~f~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~~d~~G~~nN   98 (384)
                      .++|++|+|+++|++|+|+|||++|++.++|.|.+..+|.|++++.||||.|+|||+|||+|++|+++|++.|+.|+.||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            46899999999999999999999999888999854457899999999999999999999999999999999999999999


Q ss_pred             EEEeccCCC
Q 016718           99 VYIAVPQPD  107 (384)
Q Consensus        99 vi~v~~~~~  107 (384)
                      +|+| .+++
T Consensus        82 vi~V-~~~~   89 (252)
T 2qlv_B           82 YIEV-RQPE   89 (252)
T ss_dssp             EEEE-CC--
T ss_pred             eeec-cCcc
Confidence            9999 6543

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.87  E-value=2.3e-22  Score=192.69  Aligned_cols=121  Identities=23%  Similarity=0.416  Sum_probs=95.6

Q ss_pred             CceeEEEEEeeC-CCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCee-eCCCCC
Q 016718           18 SILVPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV-SGNYGV   95 (384)
Q Consensus        18 ~~~~~v~f~w~~-~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~-~d~~G~   95 (384)
                      ....+++|+|++ +|++|+|+||||||+..++|++++ .+|.|++++.||||+|+|||+|||+|++|+++|.. .|+.|+
T Consensus       167 ~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~-~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~  245 (294)
T 3nme_A          167 LKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGK-GTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGH  245 (294)
T ss_dssp             CCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECT-TTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSC
T ss_pred             cccccceeeeccCCCCEEEEEEeccCCCCcccceEcC-CCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCC
Confidence            457899999999 789999999999999779999964 37999999999999999999999999999999976 799999


Q ss_pred             eeeEEEeccCCCCCCCCCCCCCCCCccccccccccCCCCCCCHHHHHHHHHHHHHhhhhc
Q 016718           96 VNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTH  155 (384)
Q Consensus        96 ~nNvi~v~~~~~~~p~~~~~~~~~~~dl~~~~~~~~~~~~~s~~~~e~~~~~~~~~l~~~  155 (384)
                      .||+|.| .+ +..++        ...+++.+..  +-|+.    .+.++..++.+|...
T Consensus       246 ~nn~~~v-~~-~~~~~--------~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~  289 (294)
T 3nme_A          246 TNNYAKV-VD-DPTSV--------DGTTRERLSS--EDPEL----LEEERSKLIQFLETC  289 (294)
T ss_dssp             CEEEEEE-CC-CCCTT--------CTTHHHHHSS--SSCCC----CHHHHHHHHHHHHHH
T ss_pred             EeEEEEE-CC-CCcch--------hHHHHHHhhc--CCccc----cHHHHHHHHHHHHhc
Confidence            9999999 54 32222        3444433432  22332    255677788877653

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.86  E-value=1.6e-22  Score=177.65  Aligned_cols=157  Identities=17%  Similarity=0.260  Sum_probs=116.6

Q ss_pred             HHHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCC
Q 016718          142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG  221 (384)
Q Consensus       142 e~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~  221 (384)
                      ++.++++.+.|++.+|.|+|  +.+++++.+++|+.+|+++|.+++++++||+|+ +|+++|+||.+|+++.+.....  
T Consensus         5 ~~~~~~~~~~l~~~~V~diM--~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~--   79 (170)
T 4esy_A            5 QARRRAIARAIRQVPIRDIL--TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWI--   79 (170)
T ss_dssp             HHHHHHHHHHHHTSBGGGGC--CSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTH--
T ss_pred             HHHHHHHHHHHcCCCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhccc--
Confidence            46688899999999999999  668999999999999999999999999999995 7899999999999754321000  


Q ss_pred             CCCChhh-hhhh-hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCccc
Q 016718          222 SNLTEEE-LETH-TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE  299 (384)
Q Consensus       222 ~~~~~~~-l~~~-~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~  299 (384)
                        ....+ +... .............  .  .....+|++++++++++++|.+|+.+|.+++++++||+|+    |   +
T Consensus        80 --~~~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~----g---~  146 (170)
T 4esy_A           80 --YEASEILSRAIPAPEVEHLFETGR--K--LTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD----G---V  146 (170)
T ss_dssp             --HHHHHHHTTTSCHHHHHHHHHHHT--T--CBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET----T---E
T ss_pred             --cchhhhhhhccchhhHHhhhcccc--c--cchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC----C---E
Confidence              00000 0000 0000011110000  0  0001258999999999999999999999999999999982    6   8


Q ss_pred             EEEEeeHHHHHHHHHhh
Q 016718          300 ILYLASLSDILKCICRH  316 (384)
Q Consensus       300 lvGiit~~dil~~l~~~  316 (384)
                      ++||||.+||+++|..+
T Consensus       147 lvGivt~~Dil~~l~~~  163 (170)
T 4esy_A          147 PVGIVTRRDLLKLLLLE  163 (170)
T ss_dssp             EEEEEEHHHHTTTSCCC
T ss_pred             EEEEEEHHHHHHHHHhc
Confidence            99999999999998643

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.85  E-value=8.4e-21  Score=178.12  Aligned_cols=182  Identities=11%  Similarity=0.216  Sum_probs=136.4

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      ++.++|+.. +++++++++|+.+|+++|.+++++++||+|++.++++|++|..|++..+......      ..+......
T Consensus         4 ~v~~~i~~~-~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~------~~~~~~~~~   76 (280)
T 3kh5_A            4 RVMKIAQNK-KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKY------NLIREKHER   76 (280)
T ss_dssp             BGGGTSCCS-CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGG------HHHHTTSTT
T ss_pred             hHHHHhcCC-CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchh------hhhhhcccc
Confidence            456665544 8999999999999999999999999999996468999999999998765321110      000000000


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                      .+....   .     .....+|+++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++..
T Consensus        77 ~~~~~~---~-----~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~  142 (280)
T 3kh5_A           77 NFLAAI---N-----EPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND---EN---QLISLITERDVIRALLD  142 (280)
T ss_dssp             CHHHHT---T-----SBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHGG
T ss_pred             chhHHh---h-----hhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---CC---EEEEEEEHHHHHHHHhh
Confidence            000000   0     0011258889999999999999999999999999999983   36   89999999999998865


Q ss_pred             hcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          316 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ....        .     ..+++       +|.++++++.+++++.+|++.|.+++++++||+
T Consensus       143 ~~~~--------~-----~~v~~-------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv  185 (280)
T 3kh5_A          143 KIDE--------N-----EVIDD-------YITRDVIVATPGERLKDVARTMVRNGFRRLPVV  185 (280)
T ss_dssp             GSCT--------T-----CBSGG-------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE
T ss_pred             cCCC--------C-----CCHHH-------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence            4321        1     12233       345789999999999999999999999999997

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.82  E-value=4.1e-20  Score=175.66  Aligned_cols=173  Identities=12%  Similarity=0.170  Sum_probs=138.8

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      ..++.++|  ..+++++.+++++.+|+++|.+++++.+||+|+ .++++|++|..|++..+......   .        +
T Consensus        92 ~~~v~~im--~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~lvGivt~~dl~~~~~~~~~~---~--------~  157 (296)
T 3ddj_A           92 TTPIIDYM--TPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYKDLDEI---F--------P  157 (296)
T ss_dssp             TSBGGGTS--EESCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGGGSCCC---C--------B
T ss_pred             cccHHHhc--cCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHhhhccccc---c--------c
Confidence            67899999  457889999999999999999999999999985 68999999999997654321110   0        1


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                         ..+                +|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++
T Consensus       158 ---v~~----------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~  212 (296)
T 3ddj_A          158 ---VKV----------------FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DN---KVVGIVTVVNAIKQL  212 (296)
T ss_dssp             ---HHH----------------HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHH
T ss_pred             ---HHH----------------hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHH
Confidence               122                26788999999999999999999999999999983   36   899999999999999


Q ss_pred             HhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          314 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ...+..... ....+     .++       .++|+++++++.+++++.+|+++|.+++++++||+
T Consensus       213 ~~~~~~~~~-~~~~~-----~~v-------~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv  264 (296)
T 3ddj_A          213 AKAVDKLDP-DYFYG-----KVV-------KDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLIL  264 (296)
T ss_dssp             HHHHHHTCT-HHHHT-----CBH-------HHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHhhcCh-hhhcC-----cCH-------HHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence            865543211 00111     222       33456799999999999999999999999999997

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.81  E-value=1.2e-19  Score=170.32  Aligned_cols=176  Identities=17%  Similarity=0.327  Sum_probs=137.1

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      ..++.++|  ..+++++.+++++.+|++.|.+++++.+||+|+ .++++|++|..|+++.+........          +
T Consensus        83 ~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~~----------~  149 (280)
T 3kh5_A           83 NEPVREIM--EENVITLKENADIDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKIDENE----------V  149 (280)
T ss_dssp             TSBGGGTS--BCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHGGGSCTTC----------B
T ss_pred             hhhHHHhc--CCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC-CCEEEEEEEHHHHHHHHhhcCCCCC----------C
Confidence            56899999  457889999999999999999999999999995 6899999999999876643211100          0


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      +   .                .+|+++++++.+++++.+|+..|.+++++++||++    +|   +++|+||.+|+++++
T Consensus       150 v---~----------------~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~---~~~Givt~~dl~~~~  203 (280)
T 3kh5_A          150 I---D----------------DYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS----EG---RLVGIITSTDFIKLL  203 (280)
T ss_dssp             S---G----------------GGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHH
T ss_pred             H---H----------------HHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHHHHH
Confidence            0   0                14678899999999999999999999999999996    26   899999999999998


Q ss_pred             Hhhcc--cCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          314 CRHFK--HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       314 ~~~~~--~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .....  .... ...  ....+.+       ++++|+++++++++++++.+|+++|.+++++++||+
T Consensus       204 ~~~~~~~~~~~-~~~--~~~~~~~-------v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv  260 (280)
T 3kh5_A          204 GSDWAFNHMQT-GNV--REITNVR-------MEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVV  260 (280)
T ss_dssp             TSHHHHHHHHS-CCT--HHHHHCB-------HHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEE
T ss_pred             hhhhhhhhhcc-cch--hhhhCCc-------HHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEE
Confidence            64321  0000 000  0001122       234456799999999999999999999999999997

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.81  E-value=2.8e-20  Score=176.87  Aligned_cols=176  Identities=9%  Similarity=0.054  Sum_probs=136.2

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      ..++.|+|  +.+++++++++|+.+|+++|.+++++++||+|   ++++|++|.+|++..+......      .+    .
T Consensus        19 ~~~V~dim--~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~------~~----~   83 (296)
T 3ddj_A           19 GMNIETLM--IKNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD------SC----S   83 (296)
T ss_dssp             CSSGGGTC--EESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---------C----C
T ss_pred             ccCHHHhc--cCCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccc------cc----c
Confidence            57899999  55899999999999999999999999999998   7999999999998765321110      00    0


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      ...+.+.. ..   .    ...+|+++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++
T Consensus        84 ~~~~~~~~-~~---~----v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~lvGivt~~dl~~~~  149 (296)
T 3ddj_A           84 QGDLYHIS-TT---P----IIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLLY  149 (296)
T ss_dssp             HHHHHHHH-TS---B----GGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGGG
T ss_pred             chhhHHHh-cc---c----HHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHhh
Confidence            01111111 00   0    11257889999999999999999999999999999983   36   899999999999876


Q ss_pred             HhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          314 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                      .....         .     ..++++       |.++++++.+++++.+|+++|.+++++++||+-
T Consensus       150 ~~~~~---------~-----~~v~~~-------m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  194 (296)
T 3ddj_A          150 KDLDE---------I-----FPVKVF-------MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID  194 (296)
T ss_dssp             GGSCC---------C-----CBHHHH-------SBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hcccc---------c-----ccHHHh-------hcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            43221         1     123333       457899999999999999999999999999973

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.78  E-value=1.3e-18  Score=167.41  Aligned_cols=179  Identities=15%  Similarity=0.117  Sum_probs=131.2

Q ss_pred             ccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCe-----EEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGR-----FVGVLSALDFILILRELGTNGSNLTEEELET  231 (384)
Q Consensus       157 ~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~-----~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (384)
                      +.++|  +..++++.+++++.+|++.|.+++++.+||+|+ .+.     ++|++|..|++..+......      ..+..
T Consensus       116 ~~~~~--~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~~~l~Givt~~di~~~l~~~~~~------~~~~~  186 (323)
T 3t4n_C          116 ALGVD--QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQ-DEETHREIVVSVLTQYRILKFVALNCRE------THFLK  186 (323)
T ss_dssp             HTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CTTTCCEEEEEEEEHHHHHHHHHHHCGG------GGGCC
T ss_pred             HhCCC--CCCceEeCCCCcHHHHHHHHHhCCeeEEEEEec-CCCCCccceEEEecHHHHHHHHHhcCCc------hhhhh
Confidence            55667  557889999999999999999999999999996 343     99999999999877533211      00000


Q ss_pred             hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                      .++   .+.    .         ..|+++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+|+++
T Consensus       187 ~~v---~~~----~---------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~---~~---~~~Giit~~dl~~  244 (323)
T 3t4n_C          187 IPI---GDL----N---------IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLG  244 (323)
T ss_dssp             SBG---GGT----T---------CSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEETTHHHH
T ss_pred             CcH---HHc----C---------CCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEeHHHHHH
Confidence            011   000    0         127889999999999999999999999999999983   46   8999999999999


Q ss_pred             HHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       312 ~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++......      .++.++     +++|.+. ....++++++++++++.+|+++|.+++++++||+
T Consensus       245 ~~~~~~~~------~~~~~v-----~~~m~~~-~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  299 (323)
T 3t4n_C          245 LIKGGIYN------DLSLSV-----GEALMRR-SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVV  299 (323)
T ss_dssp             HHHTTHHH------HTTSBH-----HHHGGGS-CTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEE
T ss_pred             HHhhchhh------hccCCH-----HHHHhhc-cccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEE
Confidence            98754311      122233     3333200 0001279999999999999999999999999997

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.78  E-value=1.2e-18  Score=145.76  Aligned_cols=127  Identities=13%  Similarity=0.230  Sum_probs=103.2

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (384)
                      |...++.|+|....+++++++++++.+|++.|.+++++.+||+|++.++++|+||.+|++..+.....   .        
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~---~--------   71 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSG---Q--------   71 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTT---T--------
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCC---c--------
Confidence            67789999997667888999999999999999999999999999633899999999999877643210   0        


Q ss_pred             hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                      .+   +.+                +| ++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+||++
T Consensus        72 ~~---v~~----------------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~g---~~vGivt~~dil~  125 (130)
T 3i8n_A           72 KQ---LGA----------------VM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE---YG---TVLGLVTLEDIFE  125 (130)
T ss_dssp             SB---HHH----------------HS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHH
T ss_pred             CC---HHH----------------Hh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC---CC---CEEEEEEHHHHHH
Confidence            01   122                25 45789999999999999999999999999983   46   8999999999999


Q ss_pred             HHHh
Q 016718          312 CICR  315 (384)
Q Consensus       312 ~l~~  315 (384)
                      ++..
T Consensus       126 ~l~g  129 (130)
T 3i8n_A          126 HLVG  129 (130)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9863

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.77  E-value=2.2e-18  Score=149.76  Aligned_cols=138  Identities=18%  Similarity=0.250  Sum_probs=108.6

Q ss_pred             HHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChh
Q 016718          148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE  227 (384)
Q Consensus       148 ~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~  227 (384)
                      +.+||. .++.++|....+++++.+++|+.+|+++|.+++++++||+|+ .++++|+||.+|+++++......     .+
T Consensus         9 ~e~~l~-~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~~-----~~   81 (156)
T 3k6e_A            9 FETFLL-GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDLS-----QE   81 (156)
T ss_dssp             HHHHHH-TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCC-----HH
T ss_pred             HHHHhh-ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhcccc-----cc
Confidence            334443 568899977779999999999999999999999999999995 68999999999998876543211     11


Q ss_pred             hhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHH
Q 016718          228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS  307 (384)
Q Consensus       228 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~  307 (384)
                      .+...++                   ..+|+++++++++++++.+|+.+|.++++  +||+|+   +|   +++||||.+
T Consensus        82 ~~~~~~v-------------------~~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~---~g---~l~GiiT~~  134 (156)
T 3k6e_A           82 IMADTDI-------------------VHMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDA---EG---IFQGIITRK  134 (156)
T ss_dssp             HHTTSBG-------------------GGTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECT---TS---BEEEEEEHH
T ss_pred             cccccCH-------------------HHhhcCCceecccccHHHHHHHHHHHcCC--eEEEec---CC---EEEEEEEHH
Confidence            1111100                   12588999999999999999999998864  999983   47   899999999


Q ss_pred             HHHHHHHhhccc
Q 016718          308 DILKCICRHFKH  319 (384)
Q Consensus       308 dil~~l~~~~~~  319 (384)
                      ||++++.....+
T Consensus       135 Dil~~~~~~~~~  146 (156)
T 3k6e_A          135 SILKAVNALLHD  146 (156)
T ss_dssp             HHHHHHHHHSCC
T ss_pred             HHHHHHHHHhcc
Confidence            999999876543

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.77  E-value=1.7e-18  Score=162.87  Aligned_cols=184  Identities=15%  Similarity=0.155  Sum_probs=128.4

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHH-HHHHhccCCCCCChhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL-ILRELGTNGSNLTEEELETH  232 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~-~l~~~~~~~~~~~~~~l~~~  232 (384)
                      ..++.++|  ...++++.+++++.+|++.|.++++..+||+|+ .++++|++|..|+++ .+...  .       .....
T Consensus        59 ~~~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~~--~-------~~~~~  126 (282)
T 2yzq_A           59 EEQLAMLV--KRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKS--E-------KYKGV  126 (282)
T ss_dssp             -----CCC--BSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTC--S-------GGGGC
T ss_pred             cCCHHHHc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhcc--C-------CcccC
Confidence            35688888  446789999999999999999999999999995 589999999999976 43210  0       00000


Q ss_pred             hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH--
Q 016718          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL--  310 (384)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil--  310 (384)
                      +                   ...+|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|+||.+|++  
T Consensus       127 ~-------------------v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~~---~~~Giit~~dl~~~  181 (282)
T 2yzq_A          127 E-------------------IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EG---NLVGIVDETDLLRD  181 (282)
T ss_dssp             B-------------------STTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TS---CEEEEEEGGGGGGC
T ss_pred             c-------------------HHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcC---CC---eEEEEEEHHHHhhh
Confidence            0                   01247788999999999999999999999999999973   36   899999999999  


Q ss_pred             ----HHHHhhc---cc-C-----CCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeee
Q 016718          311 ----KCICRHF---KH-S-----SSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQ  377 (384)
Q Consensus       311 ----~~l~~~~---~~-~-----~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV  377 (384)
                          +++..+.   .. .     ......+.....    ......++++|+++++++++++++.+|+++|.+++++++||
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV  257 (282)
T 2yzq_A          182 SEIVRIMKSTELAASSEEEWILESHPTLLFEKFEL----QLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPV  257 (282)
T ss_dssp             GGGCC------------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEE
T ss_pred             hhhhhhhccchhhhhhhhhhhcccchHHHHhHhhh----hhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEE
Confidence                5543100   00 0     000000000000    00011345566789999999999999999999999999999


Q ss_pred             c
Q 016718          378 P  378 (384)
Q Consensus       378 ~  378 (384)
                      +
T Consensus       258 v  258 (282)
T 2yzq_A          258 I  258 (282)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.76  E-value=5.3e-18  Score=144.90  Aligned_cols=127  Identities=13%  Similarity=0.198  Sum_probs=107.0

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (384)
                      |...++.|+|....+++++++++++.+|+++|.+++++.+||+|.+.++++|+||..|++..+.... . ..+       
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-~-~~v-------   90 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-K-IEL-------   90 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-C-CCG-------
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-C-ccH-------
Confidence            5688999999544488999999999999999999999999999953379999999999987664321 0 000       


Q ss_pred             hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                            .                .+| ++++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||..||++
T Consensus        91 ------~----------------~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~g---~~~Giit~~dil~  141 (148)
T 3lv9_A           91 ------E----------------EIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE---YG---GTSGVVTIEDILE  141 (148)
T ss_dssp             ------G----------------GTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---SEEEEEEHHHHHH
T ss_pred             ------H----------------Hhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC---CC---CEEEEEEHHHHHH
Confidence                  0                147 78899999999999999999999999999983   46   8999999999999


Q ss_pred             HHHhh
Q 016718          312 CICRH  316 (384)
Q Consensus       312 ~l~~~  316 (384)
                      ++...
T Consensus       142 ~l~~~  146 (148)
T 3lv9_A          142 EIVGE  146 (148)
T ss_dssp             HHHHT
T ss_pred             HHhCc
Confidence            98764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.76  E-value=3.1e-18  Score=143.66  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=103.1

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .++.|+|....+++++++++++.+|++.|.+++++++||+|.+.++++|+||.+|+++++...    ....     .   
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~----~~~~-----~---   69 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK----KEFT-----K---   69 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS----SCCC-----H---
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc----Cccc-----h---
Confidence            578899965567899999999999999999999999999975458999999999998765421    1110     0   


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                      ..+.+                +| ++++++.+++++.+|+++|.+++++++||+|+   +|   +++||||.+||++++.
T Consensus        70 ~~v~~----------------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~g---~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           70 EIMLR----------------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILEEIV  126 (130)
T ss_dssp             HHHHH----------------HS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT---TS---CEEEEEEHHHHHHHHH
T ss_pred             hhHHH----------------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC---CC---CEEEEeeHHHHHHHHh
Confidence            01122                25 56789999999999999999999999999983   46   8999999999999987


Q ss_pred             hh
Q 016718          315 RH  316 (384)
Q Consensus       315 ~~  316 (384)
                      ..
T Consensus       127 g~  128 (130)
T 3hf7_A          127 GD  128 (130)
T ss_dssp             C-
T ss_pred             CC
Confidence            53

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.76  E-value=9.2e-19  Score=164.68  Aligned_cols=161  Identities=15%  Similarity=0.222  Sum_probs=116.4

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      ++.++|  ..+++++++++|+.+|+++|.++++.++||+|+ .++++|++|..|++..+..                   
T Consensus         2 ~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~~~-------------------   59 (282)
T 2yzq_A            2 RVKTIM--TQNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPDE-------------------   59 (282)
T ss_dssp             BHHHHS--EESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC-------------------------
T ss_pred             chHHhc--cCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhhcc-------------------
Confidence            577888  467889999999999999999999999999995 6899999999998743210                   


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH-HHH
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CIC  314 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~-~l~  314 (384)
                        ..+             ..+|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|++|.+|+++ ++.
T Consensus        60 --~~v-------------~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~  118 (282)
T 2yzq_A           60 --EQL-------------AMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRRYFA  118 (282)
T ss_dssp             -------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTT
T ss_pred             --CCH-------------HHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHh
Confidence              000             0146677899999999999999999999999999984   36   8999999999998 664


Q ss_pred             hhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          315 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ...       ...+     ..++       ++|.++++++.+++++.+|++.|.+++++++||+
T Consensus       119 ~~~-------~~~~-----~~v~-------~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv  163 (282)
T 2yzq_A          119 KSE-------KYKG-----VEIE-------PYYQRYVSIVWEGTPLKAALKALLLSNSMALPVV  163 (282)
T ss_dssp             TCS-------GGGG-----CBST-------TTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEE
T ss_pred             ccC-------Cccc-----CcHH-------HHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence            320       0111     1223       3345788999999999999999999999999997

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.75  E-value=5.2e-18  Score=163.72  Aligned_cols=182  Identities=12%  Similarity=0.095  Sum_probs=136.1

Q ss_pred             ccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHH
Q 016718          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  236 (384)
Q Consensus       157 ~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~  236 (384)
                      +.++|  ..+++++.+++++.+|++.|.+++++.+||+|++.|+++|+||..|+++.+...... ...  .++...++  
T Consensus       120 ~~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~-~~~--~~~~~~~v--  192 (330)
T 2v8q_E          120 YLQDS--FKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE-FPK--PEFMSKSL--  192 (330)
T ss_dssp             HSSSS--CCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCS-SSC--CGGGGSBH--
T ss_pred             Hhhcc--cCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhc-cCc--hhhhcCCH--
Confidence            44677  557889999999999999999999999999995358999999999999877543221 111  11111111  


Q ss_pred             HHHHHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          237 WKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~m~-~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                       .+.    .          +|. ++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++..
T Consensus       193 -~~~----~----------v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~---~l~Giit~~dl~~~~~~  251 (330)
T 2v8q_E          193 -EEL----Q----------IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINLAAE  251 (330)
T ss_dssp             -HHH----T----------CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEGGGTGGGGGS
T ss_pred             -HHh----c----------ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEHHHHHHHHhc
Confidence             111    1          244 78899999999999999999999999999983   36   89999999999987653


Q ss_pred             hcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          316 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       316 ~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ...      ..++.++.     +++. ....|+++++++.+++++.+|+++|.+++++++||+
T Consensus       252 ~~~------~~~~~~v~-----~~~~-~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv  302 (330)
T 2v8q_E          252 KTY------NNLDVSVT-----KALQ-HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVV  302 (330)
T ss_dssp             SCC------CCCSSBHH-----HHGG-GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             ccc------ccccCcHH-----HHHh-ccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEE
Confidence            210      11122333     3321 112346799999999999999999999999999997

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.74  E-value=1.1e-17  Score=147.07  Aligned_cols=129  Identities=16%  Similarity=0.193  Sum_probs=105.4

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (384)
                      |...++.|+|....+++++.+++|+.+|+++|.+++++.+||+|.+.++++|+||..|++..+....    ..       
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~-------  107 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE----RL-------  107 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC----CC-------
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC----cc-------
Confidence            5678999999544788999999999999999999999999999953389999999999987654211    00       


Q ss_pred             hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                       ++   .                .+| ++++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||..||++
T Consensus       108 -~v---~----------------~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~g---~lvGiit~~Dil~  160 (172)
T 3lhh_A          108 -EL---V----------------DLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE---YG---DLKGLVTLQDMMD  160 (172)
T ss_dssp             -CG---G----------------GGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHH
T ss_pred             -cH---H----------------HHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC---CC---CEEEEeeHHHHHH
Confidence             00   1                147 88899999999999999999999999999983   46   8999999999999


Q ss_pred             HHHhhcc
Q 016718          312 CICRHFK  318 (384)
Q Consensus       312 ~l~~~~~  318 (384)
                      ++...+.
T Consensus       161 ~l~~~~~  167 (172)
T 3lhh_A          161 ALTGEFF  167 (172)
T ss_dssp             HHHTTCC
T ss_pred             HHhCCCc
Confidence            9986543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.74  E-value=3.4e-18  Score=142.41  Aligned_cols=124  Identities=16%  Similarity=0.246  Sum_probs=99.4

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      +.++.|+|....+++++++++++.+|++.|.++++..+||+|++.++++|+||.+|+++.+....   ...        +
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~---~~~--------~   70 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA---EAF--------S   70 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC---CCC--------C
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC---CCC--------C
Confidence            56789999543568999999999999999999999999999963379999999999976542111   000        1


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                         +.+                +|+. ++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||.+||++++
T Consensus        71 ---v~~----------------~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~~~Giit~~dll~~l  124 (127)
T 3nqr_A           71 ---MDK----------------VLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSGLVTIEDILELI  124 (127)
T ss_dssp             ---HHH----------------HCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECT---TS---CEEEEEEHHHHHHHC
T ss_pred             ---HHH----------------HcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---CC---CEEEEEEHHHHHHHH
Confidence               122                2544 679999999999999999999999999983   46   899999999999987


Q ss_pred             H
Q 016718          314 C  314 (384)
Q Consensus       314 ~  314 (384)
                      .
T Consensus       125 ~  125 (127)
T 3nqr_A          125 V  125 (127)
T ss_dssp             -
T ss_pred             h
Confidence            5

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.73  E-value=5.9e-18  Score=145.67  Aligned_cols=128  Identities=15%  Similarity=0.226  Sum_probs=106.1

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeee-eCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~-D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (384)
                      |...++.++|....+++++.+++++.+|+++|.+++++++||+ |.+.++++|+||.+|++..+.... .   .      
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-~---~------   86 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-K---A------   86 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-T---S------
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-C---C------
Confidence            5678999999443478999999999999999999999999999 643489999999999987664321 0   0      


Q ss_pred             hhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                        ++   .                .+| ++++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||..||+
T Consensus        87 --~v---~----------------~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~g---~~vGivt~~dil  138 (153)
T 3oco_A           87 --KI---S----------------TIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE---YG---GTSGIITDKDVY  138 (153)
T ss_dssp             --BG---G----------------GTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT---TS---CEEEEECHHHHH
T ss_pred             --cH---H----------------HHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC---CC---CEEEEeeHHHHH
Confidence              00   0                147 78999999999999999999999999999983   46   899999999999


Q ss_pred             HHHHhhc
Q 016718          311 KCICRHF  317 (384)
Q Consensus       311 ~~l~~~~  317 (384)
                      +++...+
T Consensus       139 ~~l~~~~  145 (153)
T 3oco_A          139 EELFGNL  145 (153)
T ss_dssp             HHHHC--
T ss_pred             HHHhccC
Confidence            9998654

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.73  E-value=5.6e-18  Score=141.62  Aligned_cols=125  Identities=20%  Similarity=0.319  Sum_probs=101.8

Q ss_pred             hhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh
Q 016718          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (384)
Q Consensus       153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (384)
                      .+.++.|+|....+++++.+++++.+|++.|.++++..+||+|.+.++++|+||..|+++.+..   .  ..        
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~---~--~~--------   69 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE---P--AL--------   69 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC---T--TS--------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc---C--Cc--------
Confidence            4678999995447889999999999999999999999999999534899999999999754320   0  00        


Q ss_pred             hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                      .+   .+                +|+ +++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||.+||+++
T Consensus        70 ~v---~~----------------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~g---~~~Giit~~Dil~~  123 (129)
T 3jtf_A           70 DI---RS----------------LVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDE---HG---GISGLVTMEDVLEQ  123 (129)
T ss_dssp             CG---GG----------------GCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC----C---CEEEEEEHHHHHHH
T ss_pred             CH---HH----------------HhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC---CC---CEEEEEEHHHHHHH
Confidence            00   11                354 4789999999999999999999999999983   46   89999999999999


Q ss_pred             HHhh
Q 016718          313 ICRH  316 (384)
Q Consensus       313 l~~~  316 (384)
                      +...
T Consensus       124 l~ge  127 (129)
T 3jtf_A          124 IVGD  127 (129)
T ss_dssp             HHHT
T ss_pred             HhCC
Confidence            8753

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.73  E-value=2.2e-17  Score=138.00  Aligned_cols=129  Identities=15%  Similarity=0.237  Sum_probs=106.0

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (384)
                      |++.++.++|  ..+++++.+++++.+|++.|.++++..+||+|  +++++|+||..|++..+......  .        
T Consensus         1 l~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~~--~--------   66 (133)
T 2ef7_A            1 MEEEIVKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKSL--E--------   66 (133)
T ss_dssp             CCCCBGGGTS--BCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTCCT--T--------
T ss_pred             CCcccHHHhc--cCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEcHHHHHHHHhcCCCc--c--------
Confidence            4567899999  55788999999999999999999999999999  47999999999998765432110  0        


Q ss_pred             hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                      .++   .                .+|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||..||++
T Consensus        67 ~~v---~----------------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~g---~~~Giit~~dll~  121 (133)
T 2ef7_A           67 TKA---E----------------EFMTASLITIREDSPITGALALMRQFNIRHLPVVDD---KG---NLKGIISIRDITR  121 (133)
T ss_dssp             CBG---G----------------GTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHH
T ss_pred             cCH---H----------------HHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHH
Confidence            000   0                146778899999999999999999999999999983   36   8999999999999


Q ss_pred             HHHhhccc
Q 016718          312 CICRHFKH  319 (384)
Q Consensus       312 ~l~~~~~~  319 (384)
                      ++...+..
T Consensus       122 ~~~~~~~~  129 (133)
T 2ef7_A          122 AIDDMFET  129 (133)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHH
Confidence            99887654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.73  E-value=1e-17  Score=143.19  Aligned_cols=139  Identities=17%  Similarity=0.212  Sum_probs=109.3

Q ss_pred             HHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhh
Q 016718          149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE  228 (384)
Q Consensus       149 ~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~  228 (384)
                      ...|...++.|+|....+++++.+++++.+|++.|.++++..+||+|+ +++++|+||..|++..+....    ....+.
T Consensus         9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~----~~~~~~   83 (150)
T 3lqn_A            9 KDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAMILDGILGLE----RIEFER   83 (150)
T ss_dssp             HHHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHTBCSS----SBCGGG
T ss_pred             HHhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHHHHHHHhhc----ccchhH
Confidence            455778999999954456899999999999999999999999999995 689999999999987653111    111011


Q ss_pred             hhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHH
Q 016718          229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD  308 (384)
Q Consensus       229 l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~d  308 (384)
                      ....++                   ..+|.++++++.+++++.+|+.+|.++++  +||+|+   +|   +++|+||.+|
T Consensus        84 ~~~~~v-------------------~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~---~g---~~~Giit~~d  136 (150)
T 3lqn_A           84 LEEMKV-------------------EQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNE---DG---YFEGILTRRA  136 (150)
T ss_dssp             GGGCBG-------------------GGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECT---TC---BEEEEEEHHH
T ss_pred             HhcCCH-------------------HHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECC---CC---cEEEEEEHHH
Confidence            111011                   11478889999999999999999999997  999983   46   8999999999


Q ss_pred             HHHHHHhhccc
Q 016718          309 ILKCICRHFKH  319 (384)
Q Consensus       309 il~~l~~~~~~  319 (384)
                      |++++..+..+
T Consensus       137 il~~l~~~~~~  147 (150)
T 3lqn_A          137 ILKLLNKKVRQ  147 (150)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHhHh
Confidence            99999987654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.72  E-value=2.5e-18  Score=145.23  Aligned_cols=128  Identities=13%  Similarity=0.204  Sum_probs=100.3

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      +.++.|+|....+++++.+++|+.+|+++|.+++++++||+|.+.++++|+||..|+++++.....          ...+
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~----------~~~~   71 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADG----------DSDD   71 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSG----------GGCC
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccC----------CCcC
Confidence            568899995446789999999999999999999999999999633799999999999765421000          0000


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      +   .                .+|+. ++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||.+||++++
T Consensus        72 v---~----------------~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~g---~lvGiit~~Dil~~l  125 (136)
T 3lfr_A           72 V---K----------------KLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDE---YG---GVAGLVTIEDVLEQI  125 (136)
T ss_dssp             G---G----------------GTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHTTC
T ss_pred             H---H----------------HHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---CC---CEEEEEEHHHHHHHH
Confidence            0   0                13644 889999999999999999999999999983   46   899999999999998


Q ss_pred             Hhhc
Q 016718          314 CRHF  317 (384)
Q Consensus       314 ~~~~  317 (384)
                      ...+
T Consensus       126 ~~~~  129 (136)
T 3lfr_A          126 VGDI  129 (136)
T ss_dssp             ----
T ss_pred             hCCC
Confidence            7643

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.72  E-value=1.2e-17  Score=152.19  Aligned_cols=160  Identities=14%  Similarity=0.203  Sum_probs=101.3

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      ..+|.++|  ..+++++.+++++.+|+++|.+++++++||+|+ .++++|+||.+|+...+.    . ..+         
T Consensus        12 ~~~~~~~~--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~l~Givt~~dl~~~~~----~-~~v---------   74 (213)
T 1vr9_A           12 HMKVKKWV--TQDFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLDL----D-SSV---------   74 (213)
T ss_dssp             -CBGGGGC--BSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSCT----T-SBS---------
T ss_pred             ccCHHHhh--cCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCEEEEEEEHHHHHhhcC----C-CcH---------
Confidence            45788999  668889999999999999999999999999995 689999999999853210    0 000         


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                          .                .+|+++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++
T Consensus        75 ----~----------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~lvGiit~~Dil~~~  128 (213)
T 1vr9_A           75 ----F----------------NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE---EM---RLKGAVSLHDFLEAL  128 (213)
T ss_dssp             ----G----------------GGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT---TC---BEEEEEEHHHHHHHH
T ss_pred             ----H----------------HHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC---CC---EEEEEEEHHHHHHHH
Confidence                1                147788999999999999999999999999999983   36   899999999999988


Q ss_pred             HhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          314 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                      ......        .      ..++..         .+.+.....++.+|++.|.+++++.+||+.
T Consensus       129 ~~~~~~--------~------~~~~~l---------~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~  171 (213)
T 1vr9_A          129 IEALAM--------D------VPGIRF---------SVLLEDKPGELRKVVDALALSNINILSVIT  171 (213)
T ss_dssp             HHSCC-------------------------------------------------------------
T ss_pred             HHHhcC--------C------CCcEEE---------EEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence            753310        0      011111         111223344699999999999999999863

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.72  E-value=2.6e-17  Score=158.93  Aligned_cols=180  Identities=13%  Similarity=0.103  Sum_probs=131.4

Q ss_pred             ccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCe----EEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          159 ELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGR----FVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       159 dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~----~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      ++|....+++++.+++++.+|++.|.+++++.+||+|+..++    ++|++|..|++..+......      .++...++
T Consensus       111 ~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~------~~~~~~~v  184 (334)
T 2qrd_G          111 KIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE------TAMLRVPL  184 (334)
T ss_dssp             HHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG------GGGCCCBG
T ss_pred             hhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc------hhhhhCcH
Confidence            456444555899999999999999999999999999963334    99999999998876532100      00000000


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                         .    .+         ..+|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+|+++++.
T Consensus       185 ---~----~l---------~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~dl~~~~~  242 (334)
T 2qrd_G          185 ---N----QM---------TIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EG---TLLNVYESVDVMHLIQ  242 (334)
T ss_dssp             ---G----GS---------SCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEETHHHHHHHT
T ss_pred             ---H----Hh---------CCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHHHHhh
Confidence               0    00         0037889999999999999999999999999999983   36   8999999999999876


Q ss_pred             hhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          315 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       315 ~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ....      ..++.+     ++++|.+..+- .++++++++++++.+|+++|.+++++++||+
T Consensus       243 ~~~~------~~~~~~-----v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  294 (334)
T 2qrd_G          243 DGDY------SNLDLS-----VGEALLKRPAN-FDGVHTCRATDRLDGIFDAIKHSRVHRLFVV  294 (334)
T ss_dssp             TSCG------GGGGSB-----HHHHHTTCCTT-CCCCCEECTTCBHHHHHHHHHHSCCCEEEEE
T ss_pred             cccc------ccccCc-----HHHHHhccccc-CCCCEEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence            4321      112222     33333100000 0378999999999999999999999999997

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.72  E-value=6.5e-17  Score=142.77  Aligned_cols=128  Identities=14%  Similarity=0.150  Sum_probs=107.4

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (384)
                      |...++.++|....+++++++++++.+|++.|.++++.++||+|.+.++++|+||.+|++.++.....    .       
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~~----~-------  101 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGR----V-------  101 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSS----C-------
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCCc----c-------
Confidence            56899999996556789999999999999999999999999998644899999999999876543210    0       


Q ss_pred             hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                       .+   .                  |.++++++.+++++.+|+.+|.+++++++||+|.   +|   +++||||..||++
T Consensus       102 -~v---~------------------~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde---~g---~lvGiIT~~Dil~  153 (173)
T 3ocm_A          102 -RR---N------------------RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADE---FG---AIEGLVTPIDVFE  153 (173)
T ss_dssp             -CG---G------------------GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT---TC---CEEEEECHHHHHH
T ss_pred             -hh---H------------------hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC---CC---CEEEEEeHHHHHH
Confidence             00   0                  1367789999999999999999999999999983   46   8999999999999


Q ss_pred             HHHhhcc
Q 016718          312 CICRHFK  318 (384)
Q Consensus       312 ~l~~~~~  318 (384)
                      ++...+.
T Consensus       154 ~l~~~i~  160 (173)
T 3ocm_A          154 AIAGEFP  160 (173)
T ss_dssp             HHHCCCC
T ss_pred             HHhCcCC
Confidence            9986543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.72  E-value=3.7e-17  Score=137.39  Aligned_cols=129  Identities=18%  Similarity=0.304  Sum_probs=104.2

Q ss_pred             HHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHH-HHHHHHhccCCCCCChh
Q 016718          149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF-ILILRELGTNGSNLTEE  227 (384)
Q Consensus       149 ~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dl-i~~l~~~~~~~~~~~~~  227 (384)
                      .++|.+.++.++|  +.+++++.+++++.+|+++|.++++..+||+|+ +++++|+||..|+ +..+.....    .   
T Consensus         2 ~~~l~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~----~---   71 (138)
T 2p9m_A            2 IDTLKNIKVKDVM--TKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD-ENKVIGIVTTTDIGYNLIRDKYT----L---   71 (138)
T ss_dssp             ---CTTCBGGGTS--BCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT-TCBEEEEEEHHHHHHHHTTTCCC----S---
T ss_pred             ccccccCCHHHhh--cCCceEECCCCcHHHHHHHHHHCCCcEEEEECC-CCeEEEEEEHHHHHHHHHhhccc----C---
Confidence            3567889999999  557889999999999999999999999999995 6899999999999 765431100    0   


Q ss_pred             hhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcC-----CCeeeEEecCCCCCCcccEEE
Q 016718          228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILY  302 (384)
Q Consensus       228 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~-----i~~lPVvd~~~~~g~~~~lvG  302 (384)
                         ..+   ..+                +|.++++++.+++++.+|+.+|.+++     ++++||+|+   +|   +++|
T Consensus        72 ---~~~---v~~----------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~---~g---~~~G  123 (138)
T 2p9m_A           72 ---ETT---IGD----------------VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK---NN---KLVG  123 (138)
T ss_dssp             ---SCB---HHH----------------HSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT---TS---BEEE
T ss_pred             ---CcC---HHH----------------HhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC---CC---eEEE
Confidence               001   122                26778899999999999999999999     999999983   36   8999


Q ss_pred             EeeHHHHHHHHHh
Q 016718          303 LASLSDILKCICR  315 (384)
Q Consensus       303 iit~~dil~~l~~  315 (384)
                      +||.+|+++++..
T Consensus       124 iit~~dll~~~~~  136 (138)
T 2p9m_A          124 IISDGDIIRTISK  136 (138)
T ss_dssp             EEEHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHh
Confidence            9999999999865

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.71  E-value=2.9e-17  Score=135.07  Aligned_cols=119  Identities=19%  Similarity=0.375  Sum_probs=100.7

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      ++.|+|  ..+++++.+++++.+|++.|.++++..+||+|+ +++++|+||..|+++.+....   ..          + 
T Consensus         2 ~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~---~~----------v-   64 (122)
T 3kpb_A            2 LVKDIL--SKPPITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQNK---KT----------I-   64 (122)
T ss_dssp             BHHHHC--CSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTTC---CB----------G-
T ss_pred             chHHhh--CCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhcc---cC----------H-
Confidence            578899  457889999999999999999999999999995 689999999999987654211   00          0 


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                        .                .+|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||..||++++..
T Consensus        65 --~----------------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~g---~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           65 --E----------------EIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD---YR---RVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             --G----------------GTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHC-
T ss_pred             --H----------------HHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECC---CC---CEEEEEeHHHHHHHhhc
Confidence              1                136778899999999999999999999999999983   36   89999999999999864

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.71  E-value=1.3e-17  Score=138.83  Aligned_cols=123  Identities=16%  Similarity=0.187  Sum_probs=101.8

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      ..++.++|  ..+++++++++++.+|++.|.++++..+||+|.  ++++|+||.+|+++.+.....   .       ..+
T Consensus         4 s~~v~~~m--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~---~-------~~~   69 (128)
T 3gby_A            4 SVTFSYLA--ETDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPT---V-------KEK   69 (128)
T ss_dssp             TCBGGGGC--BCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCC---T-------TCB
T ss_pred             ceEHHHhh--cCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCc---c-------cCc
Confidence            57899999  556789999999999999999999999999994  899999999999754321100   0       000


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                                         ...+|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++
T Consensus        70 -------------------v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~---~g---~~~Giit~~dll~~l  124 (128)
T 3gby_A           70 -------------------LGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADE---DG---RYEGVVSRKRILGFL  124 (128)
T ss_dssp             -------------------CCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT---TC---BEEEEEEHHHHHHHH
T ss_pred             -------------------HHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECC---CC---CEEEEEEHHHHHHHH
Confidence                               01146788999999999999999999999999999983   46   899999999999998


Q ss_pred             Hh
Q 016718          314 CR  315 (384)
Q Consensus       314 ~~  315 (384)
                      .+
T Consensus       125 ~~  126 (128)
T 3gby_A          125 AE  126 (128)
T ss_dssp             HT
T ss_pred             Hh
Confidence            75

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.71  E-value=1.1e-16  Score=149.72  Aligned_cols=151  Identities=15%  Similarity=0.153  Sum_probs=108.8

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC-CCeEEEEeehHHHHHHHHHhccC-CC---C---
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGTN-GS---N---  223 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~-~~~~vGilT~~Dli~~l~~~~~~-~~---~---  223 (384)
                      +...+|.|+|  +.+++++.+++++.+|.++|.+++++++||+|+. .++++|+||++||+.++...... ..   .   
T Consensus        10 ~~~~~v~diM--t~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~   87 (250)
T 2d4z_A           10 KYNIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAE   87 (250)
T ss_dssp             CSSCBTTSSS--BSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCC
T ss_pred             cCCCChHHhc--CCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhc
Confidence            3467899999  6789999999999999999999999999999964 36899999999999877543100 00   0   


Q ss_pred             -----------------------CChh------------------h----------------------------------
Q 016718          224 -----------------------LTEE------------------E----------------------------------  228 (384)
Q Consensus       224 -----------------------~~~~------------------~----------------------------------  228 (384)
                                             +...                  +                                  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (250)
T 2d4z_A           88 ADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRF  167 (250)
T ss_dssp             BCCC---------------------------------------------------------------------------C
T ss_pred             ccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccc
Confidence                                   0000                  0                                  


Q ss_pred             hhhhhH---HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEee
Q 016718          229 LETHTI---SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS  305 (384)
Q Consensus       229 l~~~~i---~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit  305 (384)
                      ....+.   ..|.+.  .+.  ...+-....|...+++|.++++|.+|+.+|.+.|++++||++.    |   +|+||||
T Consensus       168 ~~~i~~~~~~~~~~~--~l~--~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~----G---rLVGIVT  236 (250)
T 2d4z_A          168 EEMLTLEEIYRWEQR--EKN--VVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM----G---KLVGVVA  236 (250)
T ss_dssp             CSCCBHHHHHHHHHH--HTT--CBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEE
T ss_pred             ccccChhhhhhHHHH--hcC--ceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC----C---EEEEEEE
Confidence            000000   112111  111  1111001147888899999999999999999999999999973    7   9999999


Q ss_pred             HHHHHHHHHh
Q 016718          306 LSDILKCICR  315 (384)
Q Consensus       306 ~~dil~~l~~  315 (384)
                      ..||++++..
T Consensus       237 rkDl~kai~~  246 (250)
T 2d4z_A          237 LAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999999874

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.70  E-value=1.5e-16  Score=134.52  Aligned_cols=122  Identities=16%  Similarity=0.147  Sum_probs=101.5

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCC--eEEEEeehHHHHHHHHHhccCCCCCChhhhhhh
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKG--RFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~--~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (384)
                      .++.|+|  ..+++++.+++++.+|++.|.++++..+||+|+ ++  +++|+||..|++..+......  .        .
T Consensus         5 ~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~~~Givt~~dl~~~~~~~~~~--~--------~   71 (141)
T 2rih_A            5 IRTSELL--KRPPVSLPETATIREVATELAKNRVGLAVLTAR-DNPKRPVAVVSERDILRAVAQRLDL--D--------G   71 (141)
T ss_dssp             CBGGGGC--CSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEEEEHHHHHHHHHTTCCT--T--------S
T ss_pred             eEHHHHh--cCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCcceeEEEEEHHHHHHHHhcCCCC--C--------C
Confidence            6799999  568899999999999999999999999999995 56  999999999998765421100  0        0


Q ss_pred             hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                      ++   .                .+|.++++++.++ ++.+|+.+|.+++++++||+|+   +|   +++|+||.+||+++
T Consensus        72 ~v---~----------------~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~---~g---~~~Giit~~dll~~  125 (141)
T 2rih_A           72 PA---M----------------PIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK---NG---ELVGVLSIRDLCFE  125 (141)
T ss_dssp             BS---G----------------GGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHSC
T ss_pred             CH---H----------------HHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC---CC---cEEEEEEHHHHHHH
Confidence            00   0                1467899999999 9999999999999999999983   36   89999999999987


Q ss_pred             HHh
Q 016718          313 ICR  315 (384)
Q Consensus       313 l~~  315 (384)
                      +..
T Consensus       126 ~~~  128 (141)
T 2rih_A          126 RAI  128 (141)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=3.5e-17  Score=142.54  Aligned_cols=132  Identities=14%  Similarity=0.224  Sum_probs=107.2

Q ss_pred             hhhhccccccCCCC-CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhh
Q 016718          151 FLSTHTVYELLPDS-GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL  229 (384)
Q Consensus       151 ~l~~~~~~dvmp~s-~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l  229 (384)
                      .|...++.|+|... .+++++.+++++.+|+++|.++++..+||+|+ .++++|+||..|+++.+......        .
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~--------~   90 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQGAA--------S   90 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHGGG--------G
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHhcCCc--------c
Confidence            34568899999432 46889999999999999999999999999995 68999999999998876543210        0


Q ss_pred             hhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHH
Q 016718          230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (384)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~di  309 (384)
                      ...++   .                .+|.++++++.+++++.+|+.+|.+++++++||+|   + |   +++|+||..||
T Consensus        91 ~~~~v---~----------------~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~-g---~~~Giit~~di  144 (165)
T 3fhm_A           91 LQQSV---S----------------VAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE---N-G---RLAGIISIGDV  144 (165)
T ss_dssp             GTSBG---G----------------GTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHH
T ss_pred             ccCCH---H----------------HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEEHHHH
Confidence            00000   0                14778899999999999999999999999999998   3 6   89999999999


Q ss_pred             HHHHHhhc
Q 016718          310 LKCICRHF  317 (384)
Q Consensus       310 l~~l~~~~  317 (384)
                      ++++....
T Consensus       145 l~~~~~~~  152 (165)
T 3fhm_A          145 VKARIGEI  152 (165)
T ss_dssp             HHHTTCC-
T ss_pred             HHHHHHHH
Confidence            99987654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.70  E-value=2.7e-16  Score=129.61  Aligned_cols=121  Identities=21%  Similarity=0.247  Sum_probs=100.4

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      ++.|+|  ..+++++.+++++.+|++.|.++++..+||+|  +++++|+||..|+++.+......         ...+  
T Consensus         2 ~v~~~m--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~~~~---------~~~~--   66 (125)
T 1pbj_A            2 RVEDVM--VTDVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDDL---------AEVK--   66 (125)
T ss_dssp             CHHHHC--BCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCCT---------TTSB--
T ss_pred             CHHHhc--CCCceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcCCcc---------cccC--
Confidence            577889  55788999999999999999999999999999  58999999999998766532110         0001  


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                       ..+                +|.++++++.+++++.+|+.+|.+++++++||+|   + |   +++|+||.+|+++++..
T Consensus        67 -v~~----------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd---~-~---~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           67 -VWE----------------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE---D-D---EIIGVISATDILRAKMA  122 (125)
T ss_dssp             -HHH----------------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHHHHC-
T ss_pred             -HHH----------------HcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE---C-C---EEEEEEEHHHHHHHHHh
Confidence             122                2567899999999999999999999999999998   3 6   89999999999998864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.69  E-value=3.2e-16  Score=135.64  Aligned_cols=140  Identities=14%  Similarity=0.207  Sum_probs=111.0

Q ss_pred             HHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCC
Q 016718          145 RDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL  224 (384)
Q Consensus       145 ~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~  224 (384)
                      ...+.+.|...++.|+|.  . .+++.+++++.+|+++|.++++..+||+|+ +++++|+||..|++..+.....    .
T Consensus         7 ~~~l~~~l~~~~v~~im~--~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~   78 (159)
T 3fv6_A            7 TQLLADKLKKLQVKDFQS--I-PVVIHENVSVYDAICTMFLEDVGTLFVVDR-DAVLVGVLSRKDLLRASIGQQE----L   78 (159)
T ss_dssp             CHHHHHHHTTCBGGGSCB--C-CCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHTSCSC----T
T ss_pred             HHHHHHHHhhCCHHHHcC--C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHhhccCc----c
Confidence            346788899999999994  3 459999999999999999999999999995 6899999999999876521100    0


Q ss_pred             ChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEE
Q 016718          225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (384)
Q Consensus       225 ~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvG  302 (384)
                           ...++   .                .+|.+  +++++.+++++.+|+.+|.+++++++||+|+  + |...+++|
T Consensus        79 -----~~~~v---~----------------~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~-g~~~~~vG  131 (159)
T 3fv6_A           79 -----TSVPV---H----------------IIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD--T-DKGFEVIG  131 (159)
T ss_dssp             -----TTCBG---G----------------GTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE--C-SSSEEEEE
T ss_pred             -----cCcCH---H----------------HHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC--C-CcceeEEE
Confidence                 00001   1                13566  8899999999999999999999999999984  2 10115999


Q ss_pred             EeeHHHHHHHHHhhccc
Q 016718          303 LASLSDILKCICRHFKH  319 (384)
Q Consensus       303 iit~~dil~~l~~~~~~  319 (384)
                      +||.+||++++......
T Consensus       132 iit~~dil~~l~~~~~~  148 (159)
T 3fv6_A          132 RVTKTNMTKILVSLSEN  148 (159)
T ss_dssp             EEEHHHHHHHHHHHHTT
T ss_pred             EEEHHHHHHHHHHHhhc
Confidence            99999999999876543

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.69  E-value=1e-16  Score=134.86  Aligned_cols=130  Identities=21%  Similarity=0.321  Sum_probs=105.3

Q ss_pred             hhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhh
Q 016718          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (384)
Q Consensus       151 ~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (384)
                      .|...++.++|  ..+++++.+++++.+|++.|.++++..+||+|+ +++++|+||..|+++.+..   .....      
T Consensus         3 ~l~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~---~~~~~------   70 (138)
T 2yzi_A            3 MDMKAPIKVYM--TKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIV---PGLPY------   70 (138)
T ss_dssp             CCTTSBGGGTC--BCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTT---TCCCT------
T ss_pred             chhhhhHHHHh--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHh---cCCcc------
Confidence            46678999999  557889999999999999999999999999995 6899999999999632211   10000      


Q ss_pred             hhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                      ..++   .                .+|.++++++.+++++.+|+.+|.+++++++ |+|+   +|   +++|+||.+||+
T Consensus        71 ~~~v---~----------------~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~---~g---~~~Giit~~dil  124 (138)
T 2yzi_A           71 DIPV---E----------------RIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE---EG---KIVGIFTLSDLL  124 (138)
T ss_dssp             TSBG---G----------------GTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE---TT---EEEEEEEHHHHH
T ss_pred             cCCH---H----------------HHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC---CC---CEEEEEEHHHHH
Confidence            0000   0                1477889999999999999999999999999 9984   36   899999999999


Q ss_pred             HHHHhhcc
Q 016718          311 KCICRHFK  318 (384)
Q Consensus       311 ~~l~~~~~  318 (384)
                      +++...+.
T Consensus       125 ~~~~~~~~  132 (138)
T 2yzi_A          125 EASRRRLE  132 (138)
T ss_dssp             HHHHCCSC
T ss_pred             HHHHHHHH
Confidence            99986543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.69  E-value=2.3e-16  Score=136.78  Aligned_cols=134  Identities=14%  Similarity=0.207  Sum_probs=105.1

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      ..++.|+|  ..+++++.+++|+.+|+++|.++++..+||+|+ .++++|+||..||+..+......... ........+
T Consensus         4 ~~~v~dim--~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~-~~~~~~~~~   79 (160)
T 2o16_A            4 MIKVEDMM--TRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQ-GDSLAFETP   79 (160)
T ss_dssp             CCBGGGTS--EESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC----------CCCB
T ss_pred             cCcHHHHh--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhhccccc-ccchhcccC
Confidence            46799999  557889999999999999999999999999995 68999999999998876532110000 000000000


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                         +.+                +|.++++++.++++|.+|+.+|.+++++++||+|   + |   +++||||.+||++++
T Consensus        80 ---v~~----------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~-g---~lvGiit~~dil~~~  133 (160)
T 2o16_A           80 ---LFE----------------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA---K-D---VLVGIITDSDFVTIA  133 (160)
T ss_dssp             ---HHH----------------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE---T-T---EEEEEECHHHHHHHH
T ss_pred             ---HHH----------------HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE---C-C---EEEEEEEHHHHHHHH
Confidence               111                3678999999999999999999999999999998   3 6   899999999999998


Q ss_pred             Hhhc
Q 016718          314 CRHF  317 (384)
Q Consensus       314 ~~~~  317 (384)
                      ...+
T Consensus       134 ~~~~  137 (160)
T 2o16_A          134 INLL  137 (160)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8643

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.68  E-value=4.1e-16  Score=134.49  Aligned_cols=137  Identities=15%  Similarity=0.204  Sum_probs=105.2

Q ss_pred             HhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCe-eeeeeCCCCeEEEEeehHHHHHHHHHh----ccCCCCC
Q 016718          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPM-VPLWDDFKGRFVGVLSALDFILILREL----GTNGSNL  224 (384)
Q Consensus       150 ~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~-lPV~D~~~~~~vGilT~~Dli~~l~~~----~~~~~~~  224 (384)
                      +-+...++.|+|  ..+++++.+++|+.+|+++|.++++.. +||+|+ . +++|+||..|+++.+...    ......+
T Consensus        11 ~~~~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           11 HHMKVKDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-N-KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             TTCBHHHHTTSS--CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-T-EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hhhccccHhhcc--cCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-C-EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            345678899999  568999999999999999999999999 999995 4 999999999998865421    0000000


Q ss_pred             Ch--hhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEE
Q 016718          225 TE--EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (384)
Q Consensus       225 ~~--~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvG  302 (384)
                      ..  ......+   +.+                +|.+ ++++.+++++.+|+.+|.+++++++||+|+   +|   +++|
T Consensus        87 ~~~~~~~~~~~---v~~----------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~~vG  140 (157)
T 1o50_A           87 RSSMKRLIAKN---ASE----------------IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE---KG---EIVG  140 (157)
T ss_dssp             --CCCCCSSCB---HHH----------------HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEE
T ss_pred             HHHHHHHcCCc---HHH----------------HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC---CC---EEEE
Confidence            00  0000000   111                3667 899999999999999999999999999983   36   8999


Q ss_pred             EeeHHHHHHHHHhh
Q 016718          303 LASLSDILKCICRH  316 (384)
Q Consensus       303 iit~~dil~~l~~~  316 (384)
                      +||.+||++++...
T Consensus       141 iit~~dll~~l~~~  154 (157)
T 1o50_A          141 DLNSLEILLALWKG  154 (157)
T ss_dssp             EEEHHHHHHHHHHS
T ss_pred             EEEHHHHHHHHHHh
Confidence            99999999998764

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.68  E-value=5.9e-17  Score=137.90  Aligned_cols=143  Identities=16%  Similarity=0.232  Sum_probs=104.1

Q ss_pred             hhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh
Q 016718          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (384)
Q Consensus       153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (384)
                      +..++.|+|....+++++++++++.+|+++|.++++..+||+|+ +++++|+||..|++..+....    ..  ..+.  
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~----~~--~~~~--   73 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE-DWKLVGLVSDYDLLALDSGDS----TW--KTFN--   73 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHTTCC--------CC--HHHH--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-CCeEEEEEEHHHHHHhhcccC----cc--cchH--
Confidence            35789999955557899999999999999999999999999995 689999999999975322110    00  0000  


Q ss_pred             hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                         .+........    ......+|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+||+++
T Consensus        74 ---~~~~~~~~~~----~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~g---~~~Giit~~dil~~  140 (152)
T 4gqw_A           74 ---AVQKLLSKTN----GKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS---DG---KLVGIITRGNVVRA  140 (152)
T ss_dssp             ---HHHTC---------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT---TS---BEEEEEEHHHHHHH
T ss_pred             ---HHHHHHHHhc----cccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC---CC---cEEEEEEHHHHHHH
Confidence               0000000000    00000136778889999999999999999999999999983   46   89999999999999


Q ss_pred             HHhhc
Q 016718          313 ICRHF  317 (384)
Q Consensus       313 l~~~~  317 (384)
                      +....
T Consensus       141 ~~~~~  145 (152)
T 4gqw_A          141 ALQIK  145 (152)
T ss_dssp             HHC--
T ss_pred             HHhcc
Confidence            98654

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.68  E-value=1.6e-16  Score=133.22  Aligned_cols=125  Identities=18%  Similarity=0.254  Sum_probs=100.0

Q ss_pred             cccccCC-CCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          156 TVYELLP-DSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       156 ~~~dvmp-~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      ++.|+|. ...+++++.+++++.+|++.|.++++..+||+|  +++++|+||..|+++.+..   ....     ....++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~---~~~~-----~~~~~v   76 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYL---LDKP-----VKDTQV   76 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGG---SSSC-----GGGSBG
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHHHHHH---cCCC-----cccCCH
Confidence            7889993 116788999999999999999999999999998  4899999999999753321   1000     000000


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                                         ..+|.++++++.+++++.+|+.+|.+++++++||+|+    |   +++|+||.+||++++.
T Consensus        77 -------------------~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----g---~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           77 -------------------KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD----G---KVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             -------------------GGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHHH
T ss_pred             -------------------HHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEeC----C---EEEEEEEHHHHHHHHH
Confidence                               0147788999999999999999999999999999982    6   8999999999999987


Q ss_pred             hh
Q 016718          315 RH  316 (384)
Q Consensus       315 ~~  316 (384)
                      .+
T Consensus       131 ~~  132 (135)
T 2rc3_A          131 SQ  132 (135)
T ss_dssp             C-
T ss_pred             hc
Confidence            54

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.68  E-value=1.9e-16  Score=136.35  Aligned_cols=128  Identities=16%  Similarity=0.257  Sum_probs=103.6

Q ss_pred             ccccccCCCC----CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhh
Q 016718          155 HTVYELLPDS----GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (384)
Q Consensus       155 ~~~~dvmp~s----~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (384)
                      .++.|+|...    .+++++.+++++.+|+++|.++++..+||.|  +++++|+||..|+++.+.......        .
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~--------~   76 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSS--------K   76 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCCS--------S
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCCc--------c
Confidence            4688888543    6788999999999999999999999999954  689999999999987654322110        0


Q ss_pred             hhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                      ..+   +.+                +|.++++++.+++++.+|+.+|.+++++++||+|+    |   +++|+||.+||+
T Consensus        77 ~~~---v~~----------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----g---~~~Giit~~dil  130 (157)
T 4fry_A           77 ATR---VEE----------------IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDG----G---KLIGLISIGDLV  130 (157)
T ss_dssp             SCB---HHH----------------HSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHH
T ss_pred             ccC---HHH----------------HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHHH
Confidence            001   122                25778899999999999999999999999999982    6   899999999999


Q ss_pred             HHHHhhcc
Q 016718          311 KCICRHFK  318 (384)
Q Consensus       311 ~~l~~~~~  318 (384)
                      +++.....
T Consensus       131 ~~l~~~~~  138 (157)
T 4fry_A          131 KSVIADQQ  138 (157)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHHHH
Confidence            99987654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.67  E-value=1.4e-16  Score=136.20  Aligned_cols=121  Identities=12%  Similarity=0.225  Sum_probs=99.6

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .++.|+|....+++++.+++++.+|+++|.++++..+||+|+ +++++|+||..|+++.+.....    .     ...++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~-----~~~~v   97 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD-DMNIIGIFTDGDLRRVFDTGVD----M-----RDASI   97 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT-TCBEEEEEEHHHHHHHHCSSSC----C-----TTCBH
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC-CCcEEEEecHHHHHHHHhcCCC----c-----ccCcH
Confidence            589999944337889999999999999999999999999995 6899999999999876642110    0     00111


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                         .+                +|.++++++.+++++.+|+.+|.+++++++||+|+    +   +++|+||.+||++
T Consensus        98 ---~~----------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~---~~~Giit~~dil~  148 (149)
T 3k2v_A           98 ---AD----------------VMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG----D---HLLGVVHMHDLLR  148 (149)
T ss_dssp             ---HH----------------HSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHTC
T ss_pred             ---HH----------------HcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC----C---EEEEEEEHHHhhc
Confidence               22                25678899999999999999999999999999983    5   7999999999975

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.67  E-value=1.3e-16  Score=139.92  Aligned_cols=155  Identities=17%  Similarity=0.234  Sum_probs=106.0

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCC--CCCChhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG--SNLTEEELET  231 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~--~~~~~~~l~~  231 (384)
                      ..+|.|+|....+++++.+++|+.+|+++|.++++.++||+|+ .++++|+||..||++.+.......  ..+....-..
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~   81 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST   81 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHTCC-------------------C
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC-CCeEEEEEEHHHHHhhhhhccccCCcccccccccch
Confidence            3678999954447899999999999999999999999999995 689999999999985321110000  0000000000


Q ss_pred             h-hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          232 H-TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       232 ~-~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                      + .+............    .....+|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||.+||+
T Consensus        82 ~~~~~~~~~~~~~~~~----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~~vGiit~~dil  151 (180)
T 3sl7_A           82 WKTFNELQKLISKTYG----KVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA---DG---KLIGILTRGNVV  151 (180)
T ss_dssp             CCSHHHHHHHHHTTTT----CBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT---TC---BEEEEEEHHHHH
T ss_pred             hhhhHHHHHHHhcccc----ccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHH
Confidence            0 00000111000000    0001247788899999999999999999999999999983   46   899999999999


Q ss_pred             HHHHhhccc
Q 016718          311 KCICRHFKH  319 (384)
Q Consensus       311 ~~l~~~~~~  319 (384)
                      +++......
T Consensus       152 ~~~~~~~~~  160 (180)
T 3sl7_A          152 RAALQIKRN  160 (180)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhh
Confidence            999876544

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.67  E-value=2.5e-16  Score=135.99  Aligned_cols=138  Identities=11%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeC-CCCeEEEEeehHHHHHHHHHhccCCCCCChhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~-~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (384)
                      +...++.|+|  +.+++++.+++++.+|+++|.++++.++||+|+ +.++++|+||..|++..+......  ..   ...
T Consensus        10 ~~~~~v~dim--~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~--~~---~~~   82 (164)
T 2pfi_A           10 SHHVRVEHFM--NHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS--RA---PGH   82 (164)
T ss_dssp             CCSCBHHHHC--BCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC------------CC
T ss_pred             ccCCCHHHHc--CCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc--cC---Ccc
Confidence            4567899999  557889999999999999999999999999995 368999999999998766422110  00   000


Q ss_pred             hhhHHHHHHHHHhhccccccCCCCCCCCCC-ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHH
Q 016718          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (384)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~-~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~di  309 (384)
                      ..++   .+.+..-           .+..+ ++++.+++++.+|+.+|.+++++++||+|+    |   +++||||.+||
T Consensus        83 ~~~v---~~~m~~~-----------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----g---~l~Giit~~di  141 (164)
T 2pfi_A           83 QQCL---QDILARG-----------CPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR----G---RAVGCVSWVEM  141 (164)
T ss_dssp             CCBH---HHHHHTT-----------CCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET----T---EEEEEEEHHHH
T ss_pred             cchh---hhhhccc-----------ccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC----C---EEEEEEEHHHH
Confidence            0111   2332110           01122 789999999999999999999999999982    6   89999999999


Q ss_pred             HHHHHhhc
Q 016718          310 LKCICRHF  317 (384)
Q Consensus       310 l~~l~~~~  317 (384)
                      ++++....
T Consensus       142 l~~~~~~~  149 (164)
T 2pfi_A          142 KKAISNLT  149 (164)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhh
Confidence            99998755

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.67  E-value=2e-16  Score=139.44  Aligned_cols=158  Identities=11%  Similarity=0.118  Sum_probs=108.5

Q ss_pred             HhhhhccccccCCCCCc--EEEE--ecCccHHHHHHHHHHcCCCeeeee--eCCCCeEEEEeehHHHHHHHHHhccCCCC
Q 016718          150 SFLSTHTVYELLPDSGK--VTAL--DVNLAVKQAFHVLYEQGLPMVPLW--DDFKGRFVGVLSALDFILILRELGTNGSN  223 (384)
Q Consensus       150 ~~l~~~~~~dvmp~s~~--vv~i--~~~~~l~~A~~~L~~~~i~~lPV~--D~~~~~~vGilT~~Dli~~l~~~~~~~~~  223 (384)
                      .++...++.|+|....+  ++++  ++++++.+|+++|.+++++.+||+  | +.++++|+||..|++..+.........
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d-~~~~lvGiit~~dl~~~~~~~~~~~~~   84 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR-ESQRLVGFVLRRDLIISIENARKKQDG   84 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHHHHTSCSC
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEEC-CCCeEEEEEEHHHHHHHHHhhcccCCC
Confidence            57788999999965422  6777  999999999999999999999999  5 468999999999999876543111000


Q ss_pred             CChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEE
Q 016718          224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYL  303 (384)
Q Consensus       224 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGi  303 (384)
                      +....+....-...........  .  .....+|.++++++.++++|.+|+.+|.+++++++||+|+    |   +++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~----g---~~vGi  153 (185)
T 2j9l_A           85 VVSTSIIYFTEHSPPLPPYTPP--T--LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN----G---RLLGI  153 (185)
T ss_dssp             CCTTCEEECSSSCCCCCTTCCC--C--EECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEE
T ss_pred             ccccceeecccCCccccccccc--C--ccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEEC----C---EEEEE
Confidence            0000000000000000000000  0  0011247788999999999999999999999999999972    6   89999


Q ss_pred             eeHHHHHHHHHhhccc
Q 016718          304 ASLSDILKCICRHFKH  319 (384)
Q Consensus       304 it~~dil~~l~~~~~~  319 (384)
                      ||.+||++++......
T Consensus       154 it~~dll~~l~~~~~~  169 (185)
T 2j9l_A          154 ITKKDVLKHIAQMANQ  169 (185)
T ss_dssp             EEHHHHHHHHHHHCC-
T ss_pred             EEHHHHHHHHHHhhcc
Confidence            9999999999876543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.66  E-value=8.4e-17  Score=139.08  Aligned_cols=121  Identities=17%  Similarity=0.210  Sum_probs=99.0

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (384)
                      |...++.|+|....+++++.+++++.+|++.|.++++..+||+|.+.++++|+||..|++.++...            ..
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~------------~~  102 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP------------EQ  102 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG------------GG
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC------------Cc
Confidence            568999999955457899999999999999999999999999996335999999999997543110            00


Q ss_pred             hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                      .+   +.+                +|+ +++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||..||+
T Consensus       103 ~~---v~~----------------im~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~g---~~~Givt~~Dil  155 (156)
T 3oi8_A          103 FH---LKS----------------ILR-PAVFVPEGKSLTALLKEFREQRNHMAIVIDE---YG---GTSGLVTFEDII  155 (156)
T ss_dssp             CC---HHH----------------HCB-CCCEEETTSBHHHHHHHHHHTTCCEEEEECT---TS---SEEEEEEHHHHC
T ss_pred             cc---HHH----------------HcC-CCEEECCCCCHHHHHHHHHhcCCeEEEEECC---CC---CEEEEEEHHHhc
Confidence            01   122                254 4789999999999999999999999999983   46   899999999986

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.66  E-value=6.4e-16  Score=130.37  Aligned_cols=132  Identities=17%  Similarity=0.231  Sum_probs=98.9

Q ss_pred             hccccc---cCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhh
Q 016718          154 THTVYE---LLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (384)
Q Consensus       154 ~~~~~d---vmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (384)
                      ..++.+   +|  ..+++++.+++++.+|+++|.++++..+||+|+ .++++|+||..|++..+......        ..
T Consensus         7 ~~~v~~~~~~~--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~--------~~   75 (144)
T 2nyc_A            7 KIPIGDLNIIT--QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYN--------DL   75 (144)
T ss_dssp             GSBGGGSSCCB--CSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC------------C
T ss_pred             hcchhhcCCCC--CCCceEECCCCcHHHHHHHHHHcCcceeeEEcC-CCcEEEEEcHHHHHHHhcccccc--------cC
Confidence            456666   56  467889999999999999999999999999995 68999999999998766431100        00


Q ss_pred             hhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                      ..++   .+.+....          .-..+++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+||+
T Consensus        76 ~~~v---~~~m~~~~----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~g---~~~Giit~~dil  136 (144)
T 2nyc_A           76 SLSV---GEALMRRS----------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD---VG---RLVGVLTLSDIL  136 (144)
T ss_dssp             CSBH---HHHHHHCC----------------CEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---BEEEEEEHHHHH
T ss_pred             CccH---HHHHhcCc----------cccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC---CC---CEEEEEEHHHHH
Confidence            1112   23321100          00136889999999999999999999999999983   36   899999999999


Q ss_pred             HHHHh
Q 016718          311 KCICR  315 (384)
Q Consensus       311 ~~l~~  315 (384)
                      +++..
T Consensus       137 ~~l~~  141 (144)
T 2nyc_A          137 KYILL  141 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.66  E-value=1.5e-16  Score=133.00  Aligned_cols=126  Identities=17%  Similarity=0.243  Sum_probs=99.6

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHH-HHHHhccCCCCCChhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL-ILRELGTNGSNLTEEELE  230 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~-~l~~~~~~~~~~~~~~l~  230 (384)
                      ++..++.|+|  +.+++++.+++++.+|++.|.++++..+||+|+ +++++|+||..|++. .+.....         ..
T Consensus         5 ~~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~---------~~   72 (133)
T 1y5h_A            5 FTMTTARDIM--NAGVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGLD---------PN   72 (133)
T ss_dssp             ---CCHHHHS--EETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTCC---------TT
T ss_pred             hhhcCHHHHh--cCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC-CCeEEEEEeHHHHHHHHHhcCCC---------cc
Confidence            4456889999  457889999999999999999999999999985 689999999999973 3321110         00


Q ss_pred             hhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                      ..+   +.+.                |.++++++++++++.+|+.+|.+++++++||+|   + |   +++|+||.+||+
T Consensus        73 ~~~---v~~~----------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~-g---~~~Giit~~dil  126 (133)
T 1y5h_A           73 TAT---AGEL----------------ARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS---E-H---RLVGIVTEADIA  126 (133)
T ss_dssp             TSB---HHHH----------------HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHH
T ss_pred             ccC---HHHH----------------hcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEEHHHHH
Confidence            011   1222                467889999999999999999999999999998   3 6   899999999999


Q ss_pred             HHHHh
Q 016718          311 KCICR  315 (384)
Q Consensus       311 ~~l~~  315 (384)
                      +++..
T Consensus       127 ~~l~~  131 (133)
T 1y5h_A          127 RHLPE  131 (133)
T ss_dssp             HTCC-
T ss_pred             HHHHh
Confidence            98643

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.65  E-value=3.9e-16  Score=134.09  Aligned_cols=137  Identities=20%  Similarity=0.228  Sum_probs=105.4

Q ss_pred             hhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhh
Q 016718          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (384)
Q Consensus       151 ~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (384)
                      .|...++.|+|....+++++.+++++.+|++.|.++++..+||+|+ +++++|+||..|++..+...    .........
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~----~~~~~~~~~   81 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAILGL----ERIEFERLE   81 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSBCS----SSBCGGGGG
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHhcc----cccchHHhc
Confidence            4567899999954347889999999999999999999999999995 68999999999997654211    001000000


Q ss_pred             hhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                      ..++                   ..+|.++++++.+++++.+|+.+|.++++  +||+|+   +|   +++|+||.+||+
T Consensus        82 ~~~v-------------------~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~---~g---~~~Giit~~dil  134 (157)
T 2emq_A           82 TMKV-------------------EEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND---DG---YFAGIFTRREVL  134 (157)
T ss_dssp             TCBG-------------------GGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS---SS---SEEEEEEHHHHH
T ss_pred             CCcH-------------------HHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC---CC---eEEEEEEHHHHH
Confidence            0000                   11477889999999999999999999988  999983   36   899999999999


Q ss_pred             HHHHhhccc
Q 016718          311 KCICRHFKH  319 (384)
Q Consensus       311 ~~l~~~~~~  319 (384)
                      +++......
T Consensus       135 ~~~~~~~~~  143 (157)
T 2emq_A          135 KQLNKQLHR  143 (157)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHhhc
Confidence            999877654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.65  E-value=5.4e-16  Score=133.90  Aligned_cols=136  Identities=18%  Similarity=0.205  Sum_probs=105.3

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (384)
                      |...++.++|....+++++.+++++.+|+++|.++++..+||+|+ .++++|+||..|++..+....    .+.......
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~----~~~~~~~~~   85 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLE----RIEFEKLDQ   85 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSS----SBCGGGTTT
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC-CCCEEEEeEHHHHHHHhhhhc----ccchhhhcc
Confidence            556889999943237889999999999999999999999999995 689999999999987653210    000000111


Q ss_pred             hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                      .++   .+                +|.++++++.+++++.+|+.+|.++++  +||+|.   +|   +++|+||.+||++
T Consensus        86 ~~v---~~----------------~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~---~g---~~vGiit~~dil~  138 (159)
T 1yav_A           86 ITV---EE----------------VMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND---EQ---VFEGIFTRRVVLK  138 (159)
T ss_dssp             SBH---HH----------------HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT---TC---BEEEEEEHHHHHH
T ss_pred             CCH---HH----------------hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC---CC---eEEEEEEHHHHHH
Confidence            111   22                267789999999999999999999987  999983   36   8999999999999


Q ss_pred             HHHhhccc
Q 016718          312 CICRHFKH  319 (384)
Q Consensus       312 ~l~~~~~~  319 (384)
                      ++...+..
T Consensus       139 ~~~~~~~~  146 (159)
T 1yav_A          139 ELNKHIRS  146 (159)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHh
Confidence            99876654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.64  E-value=1.1e-15  Score=138.72  Aligned_cols=133  Identities=15%  Similarity=0.193  Sum_probs=109.9

Q ss_pred             HHHHHHHHhh--hhccccccCCCCCcEEEEecCccHHHHHHHHHHc---CCCeeeeeeCCCCeEEEEeehHHHHHHHHHh
Q 016718          143 LSRDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (384)
Q Consensus       143 ~~~~~~~~~l--~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~---~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~  217 (384)
                      .++..++..|  ...++.++|  +..++++.+++|+.+|++.|.++   ++..+||+|. .++++|+||.+|++..    
T Consensus        40 ~e~~~i~~~l~~~~~~v~~iM--~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~----  112 (205)
T 3kxr_A           40 RQRQRFELYDQYSENEIGRYT--DHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFKH----  112 (205)
T ss_dssp             HHHHHHHHHHHSCTTCGGGGC--BCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTTS----
T ss_pred             HHHHHHHHHhCCCcchHHhhc--cCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHhC----
Confidence            3555666655  477899999  56889999999999999999998   8999999995 7899999999998521    


Q ss_pred             ccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCc
Q 016718          218 GTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC  297 (384)
Q Consensus       218 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~  297 (384)
                        . ...        ++   .                .+|+++++++.+++++.+|+++|.+++++++||+|+   +|  
T Consensus       113 --~-~~~--------~v---~----------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~---~g--  157 (205)
T 3kxr_A          113 --E-PHE--------PL---I----------------SLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD---AG--  157 (205)
T ss_dssp             --C-TTS--------BG---G----------------GGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT---TS--
T ss_pred             --C-Ccc--------hH---H----------------HHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC---CC--
Confidence              0 000        00   1                147888999999999999999999999999999983   46  


Q ss_pred             ccEEEEeeHHHHHHHHHhhcc
Q 016718          298 QEILYLASLSDILKCICRHFK  318 (384)
Q Consensus       298 ~~lvGiit~~dil~~l~~~~~  318 (384)
                       +++||||..||++.+.....
T Consensus       158 -~lvGiIT~~Dil~~i~~e~~  177 (205)
T 3kxr_A          158 -ELIGRVTLRAATALVREHYE  177 (205)
T ss_dssp             -BEEEEEEHHHHHHHHHHHHC
T ss_pred             -eEEEEEEHHHHHHHHHHHHH
Confidence             89999999999999987654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.63  E-value=1e-15  Score=135.66  Aligned_cols=125  Identities=19%  Similarity=0.291  Sum_probs=102.5

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .++.++|  ...++++.+++|+.+|+++|.++++..+||+|. +++++|+||..|++..+......        ....++
T Consensus         9 ~~v~~im--~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~-~g~~vGivt~~dl~~~~~~~~~~--------~~~~~v   77 (184)
T 1pvm_A            9 MRVEKIM--NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRNKK--------PDEVPI   77 (184)
T ss_dssp             CBGGGTS--BTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGCCC--------GGGSBG
T ss_pred             cCHHHhc--CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhcccC--------cccCCH
Confidence            6899999  567899999999999999999999999999985 58999999999997654311000        000000


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                                         ..+|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||..||++++.
T Consensus        78 -------------------~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           78 -------------------RLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD---PG---RVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             -------------------GGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT---TC---CEEEEEEHHHHTTTSC
T ss_pred             -------------------HHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC---CC---eEEEEEEHHHHHHHHH
Confidence                               0147788999999999999999999999999999983   36   8999999999999876


Q ss_pred             h
Q 016718          315 R  315 (384)
Q Consensus       315 ~  315 (384)
                      .
T Consensus       133 ~  133 (184)
T 1pvm_A          133 R  133 (184)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.59  E-value=5e-15  Score=137.21  Aligned_cols=148  Identities=14%  Similarity=0.216  Sum_probs=98.8

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCC------------
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG------------  221 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~------------  221 (384)
                      ..++.|+|  +.+++++.+++++.+|+++|.+++++++||+|+ +|+++|+||..|+++.+.......            
T Consensus         6 ~~~v~~im--~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v   82 (245)
T 3l2b_A            6 KLKVEDLE--MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNI   82 (245)
T ss_dssp             CCBGGGSC--CBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred             cCcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence            35799999  567889999999999999999999999999995 689999999999998764321000            


Q ss_pred             ------------------------CCCChhhhhhh---------------------------------hH-HHHHH----
Q 016718          222 ------------------------SNLTEEELETH---------------------------------TI-SAWKV----  239 (384)
Q Consensus       222 ------------------------~~~~~~~l~~~---------------------------------~i-~~~~~----  239 (384)
                                              .+...+.+...                                 .. ..+.+    
T Consensus        83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~  162 (245)
T 3l2b_A           83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKK  162 (245)
T ss_dssp             HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHH
Confidence                                    00000000000                                 00 00000    


Q ss_pred             --------------HHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEe
Q 016718          240 --------------GKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA  304 (384)
Q Consensus       240 --------------~~~~~~~~~~~~~~~~~m~-~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGii  304 (384)
                                    ..+.+..   ......+|+ ++++++++++++.+|+++|.+++++++||+|+   +|   +++|||
T Consensus       163 ~~~~~i~t~~d~~~~~~~~~~---~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~---~~---~~~Gii  233 (245)
T 3l2b_A          163 NNITVITTPHDSFTASRLIVQ---SLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE---NN---KVVGSI  233 (245)
T ss_dssp             HTCEEEECSSCHHHHHHHGGG---GSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEE
T ss_pred             cCCeEEEeCCChHHHHHHHhc---CCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC---CC---eEEEEE
Confidence                          0000000   000012577 89999999999999999999999999999983   36   899999


Q ss_pred             eHHHHHHHH
Q 016718          305 SLSDILKCI  313 (384)
Q Consensus       305 t~~dil~~l  313 (384)
                      |.+|++++.
T Consensus       234 t~~dll~~~  242 (245)
T 3l2b_A          234 ARFHLISTH  242 (245)
T ss_dssp             ECC------
T ss_pred             EHHHhhchh
Confidence            999999874

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.54  E-value=3.6e-14  Score=135.06  Aligned_cols=131  Identities=21%  Similarity=0.268  Sum_probs=107.2

Q ss_pred             HHHHHHhh--hhccccccCCCCCcEEEEecCccHHHHHHHHHHc-----CCCeeeeeeCCCCeEEEEeehHHHHHHHHHh
Q 016718          145 RDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (384)
Q Consensus       145 ~~~~~~~l--~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~-----~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~  217 (384)
                      ...+++.+  ...++.++|  +..++++.+++++.+|++.|.++     ++..+||+|+ .++++|+||..|++..    
T Consensus       125 ~~~i~~ll~~~~~~v~~iM--~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~-~~~lvGivt~~dll~~----  197 (286)
T 2oux_A          125 AGEIKELLHYEDETAGAIM--TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVN----  197 (286)
T ss_dssp             HHHHHHHTTSCTTBHHHHC--BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTS----
T ss_pred             HHHHHHHhcCChHHHHHhC--CCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC-CCeEEEEEEHHHHHcC----
Confidence            44455555  367899999  55889999999999999999998     8888999995 6899999999998632    


Q ss_pred             ccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCc
Q 016718          218 GTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC  297 (384)
Q Consensus       218 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~  297 (384)
                        . ...        +   +.+                +|.++++++++++++.+|+.+|.+++++++||+|.   +|  
T Consensus       198 --~-~~~--------~---v~~----------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~---~g--  242 (286)
T 2oux_A          198 --D-DDT--------L---IAD----------------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY---DD--  242 (286)
T ss_dssp             --C-TTS--------B---HHH----------------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TC--
T ss_pred             --C-CCC--------c---HHH----------------HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC---CC--
Confidence              0 000        1   122                26788999999999999999999999999999983   46  


Q ss_pred             ccEEEEeeHHHHHHHHHhhcc
Q 016718          298 QEILYLASLSDILKCICRHFK  318 (384)
Q Consensus       298 ~~lvGiit~~dil~~l~~~~~  318 (384)
                       +++||||..||++.+.....
T Consensus       243 -~lvGiIT~~Dil~~i~~e~~  262 (286)
T 2oux_A          243 -HLLGIVTVDDIIDVIDDEAA  262 (286)
T ss_dssp             -BEEEEEEHHHHHHHHHHHHH
T ss_pred             -eEEEEEEHHHHHHHHHHHhH
Confidence             89999999999999887543

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.51  E-value=4.6e-14  Score=145.47  Aligned_cols=131  Identities=15%  Similarity=0.138  Sum_probs=105.1

Q ss_pred             hhhccccccCCCCCcEEEEecC-ccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVN-LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~-~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (384)
                      +...++.|+|  +.+++++.++ +|+.+|+++|.+++++.+||+|.+.++++||||.+||++.+....... ..      
T Consensus       381 l~~~~V~diM--~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~-~~------  451 (527)
T 3pc3_A          381 WWSLAIAELE--LPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQ-SD------  451 (527)
T ss_dssp             TTTSBGGGGC--CCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCT-TS------
T ss_pred             ccCCcHHHhC--cCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcC-CC------
Confidence            4468899999  5688899999 999999999999999999999933689999999999998765421110 00      


Q ss_pred             hhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCC-CCCCcccEEEEeeHHHH
Q 016718          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDI  309 (384)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~-~~g~~~~lvGiit~~di  309 (384)
                        ++   .                ++|+++++++.++++|.+|+++|.++++  +||+|++. ..|   +++||||..||
T Consensus       452 --~V---~----------------~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g---~lvGIVT~~Dl  505 (527)
T 3pc3_A          452 --PA---I----------------KALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKV---ELKALATKLDV  505 (527)
T ss_dssp             --BG---G----------------GGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCE---EEEEEEEHHHH
T ss_pred             --cH---H----------------HHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCC---eEEEEEEHHHH
Confidence              00   1                1478899999999999999999988776  69998410 025   89999999999


Q ss_pred             HHHHHhhc
Q 016718          310 LKCICRHF  317 (384)
Q Consensus       310 l~~l~~~~  317 (384)
                      ++++..+.
T Consensus       506 l~~l~~~~  513 (527)
T 3pc3_A          506 TTFIAAGK  513 (527)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHhcc
Confidence            99998764

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.51  E-value=8.4e-14  Score=131.81  Aligned_cols=122  Identities=18%  Similarity=0.303  Sum_probs=100.4

Q ss_pred             hhccccccCCCCCcEEEEecCccHHHHHHHHHHc-----CCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChh
Q 016718          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE  227 (384)
Q Consensus       153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~-----~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~  227 (384)
                      ...++.++|  ...++++.+++++.+|++.|.++     ++..+||+|. .++++|+||.+|++..    ... ..+   
T Consensus       133 ~~~~v~~iM--~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~----~~~-~~v---  201 (278)
T 2yvy_A          133 EEDEAGGLM--TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA----DPR-TRV---  201 (278)
T ss_dssp             CTTBGGGTC--BSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT-TCBEEEEEEHHHHHHS----CTT-CBS---
T ss_pred             CcchHHhhc--CCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC-CCCEEEEEEHHHHhcC----CCC-CcH---
Confidence            367899999  55889999999999999999998     8999999996 6899999999999642    000 000   


Q ss_pred             hhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHH
Q 016718          228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS  307 (384)
Q Consensus       228 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~  307 (384)
                                                ..+|.++++++++++++.+|+.+|.+++++++||+|.   +|   +++||||..
T Consensus       202 --------------------------~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~lvGivT~~  249 (278)
T 2yvy_A          202 --------------------------AEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE---EG---RLVGIVTVD  249 (278)
T ss_dssp             --------------------------TTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---BEEEEEEHH
T ss_pred             --------------------------HHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC---CC---eEEEEEEHH
Confidence                                      1147788999999999999999999999999999983   46   899999999


Q ss_pred             HHHHHHHhhc
Q 016718          308 DILKCICRHF  317 (384)
Q Consensus       308 dil~~l~~~~  317 (384)
                      ||++.+....
T Consensus       250 Dil~~i~~e~  259 (278)
T 2yvy_A          250 DVLDVLEAEA  259 (278)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHHHh
Confidence            9999987643

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.50  E-value=2.4e-14  Score=152.17  Aligned_cols=84  Identities=18%  Similarity=0.167  Sum_probs=71.6

Q ss_pred             CCCCCceeEEEEEeeC--CCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEee--cCCCCCe
Q 016718           14 GVVGSILVPVRFIWPN--GGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR--HDENQPH   88 (384)
Q Consensus        14 ~~~~~~~~~v~f~w~~--~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~--~d~~~p~   88 (384)
                      +......++|+|+++.  +|++|+|+||||+|++. .+|++.   +|.|++++.||||+|+|||+|||+|.  +||++|.
T Consensus        11 ~~~~~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~---~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~   87 (696)
T 4aee_A           11 GKGRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKI---EEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEE   87 (696)
T ss_dssp             TTTEEEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEE---TTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCC
T ss_pred             CCCCCCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEec---CCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCc
Confidence            3345567888888876  68999999999999764 688774   79999999999999999999999999  7888773


Q ss_pred             ---eeCCCCCeeeEE
Q 016718           89 ---VSGNYGVVNCVY  100 (384)
Q Consensus        89 ---~~d~~G~~nNvi  100 (384)
                         +.|.+|..|++.
T Consensus        88 ~~y~~~~~g~~n~~~  102 (696)
T 4aee_A           88 KKCVHTSFFPEYKKC  102 (696)
T ss_dssp             EEEEECSSCTTSEEE
T ss_pred             ccccccCCcccccee
Confidence               569999999985

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.47  E-value=4.4e-14  Score=123.52  Aligned_cols=110  Identities=18%  Similarity=0.291  Sum_probs=84.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccC-----CCCc--c---
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-----SSSL--P---  325 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~-----~~~~--~---  325 (384)
                      +|+++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+||++++.......     ....  .   
T Consensus        23 iM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~g---~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~   96 (170)
T 4esy_A           23 ILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ---NG---HLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVE   96 (170)
T ss_dssp             GCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT---TS---CEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHH
T ss_pred             hcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC---Cc---cEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHH
Confidence            69999999999999999999999999999999983   46   8999999999998654321100     0000  0   


Q ss_pred             ccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          326 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       326 ~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .+......+       .++++|+++++++++++++.+|+++|.+++++++||+
T Consensus        97 ~~~~~~~~~-------~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVv  142 (170)
T 4esy_A           97 HLFETGRKL-------TASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVV  142 (170)
T ss_dssp             HHHHHHTTC-------BHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEE
T ss_pred             hhhcccccc-------chhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEE
Confidence            000001111       2345677999999999999999999999999999997

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.44  E-value=2.1e-14  Score=151.10  Aligned_cols=155  Identities=11%  Similarity=0.120  Sum_probs=104.4

Q ss_pred             hhccccccCCCCCcEEEEecCccHHHHHHHHH-HcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccC-CCCCCh-h--
Q 016718          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLY-EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN-GSNLTE-E--  227 (384)
Q Consensus       153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~-~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~-~~~~~~-~--  227 (384)
                      ...++.|+|....+++++++++++.+|.+.|. +++++++||+|+ +++++|+||.+|+++.+...... ...... +  
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC--------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            56789999953368889999999999999999 799999999996 68999999999998755321100 000000 0  


Q ss_pred             -hhhhhhHH-HHHHHHHh--------hccc-----cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCC
Q 016718          228 -ELETHTIS-AWKVGKLQ--------LNLK-----RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG  292 (384)
Q Consensus       228 -~l~~~~i~-~~~~~~~~--------~~~~-----~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~  292 (384)
                       .++...+. ..+.....        ..++     ...+...++|+++++++++++++.+|+++|.+++++++||+|   
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve---  606 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE---  606 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE---
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE---
Confidence             00000000 00000000        0000     000112247999999999999999999999999999999996   


Q ss_pred             CCCCcccEEEEeeHHHHHHHHHh
Q 016718          293 PAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       293 ~~g~~~~lvGiit~~dil~~l~~  315 (384)
                       +|   +++||||.+||++++.+
T Consensus       607 -~G---~lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          607 -RG---KLVGIVEREDVAYGYSN  625 (632)
T ss_dssp             -TT---EEEEEEEGGGTEECCCC
T ss_pred             -CC---EEEEEEehhhHHHHHhh
Confidence             26   89999999999887554

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.42  E-value=8.4e-12  Score=127.89  Aligned_cols=129  Identities=16%  Similarity=0.199  Sum_probs=102.0

Q ss_pred             HHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC-CCeEEEEeehHHHHHHHHHhccCC
Q 016718          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGTNG  221 (384)
Q Consensus       143 ~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~-~~~~vGilT~~Dli~~l~~~~~~~  221 (384)
                      .+...+++.+.   ..+.|  ...++++++++|+.+|.++|.+++++.+||+|+. .++++|+||.+||..     ... 
T Consensus       104 ~q~~~V~~V~~---~~~~m--~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~-----~~~-  172 (511)
T 3usb_A          104 QQAEQVDKVKR---SESGV--ISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF-----IQD-  172 (511)
T ss_dssp             HHHHHHHHHHT---SSSCS--SSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT-----CCC-
T ss_pred             HHHHHHHHhhc---ccccc--ccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh-----hcc-
Confidence            33445566554   44566  4467899999999999999999999999999941 589999999999842     111 


Q ss_pred             CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCC-CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccE
Q 016718          222 SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI  300 (384)
Q Consensus       222 ~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~-~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~l  300 (384)
                      ..        .   .+.+                +|++ +++++++++++.+|+++|.+++++.+||+|.   +|   ++
T Consensus       173 ~~--------~---~V~~----------------vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe---~g---~l  219 (511)
T 3usb_A          173 YS--------I---KISD----------------VMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN---NG---VL  219 (511)
T ss_dssp             SS--------S---BHHH----------------HCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT---TS---BE
T ss_pred             CC--------C---cHHH----------------hcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC---CC---CE
Confidence            00        0   1122                2666 8999999999999999999999999999983   46   89


Q ss_pred             EEEeeHHHHHHHHHh
Q 016718          301 LYLASLSDILKCICR  315 (384)
Q Consensus       301 vGiit~~dil~~l~~  315 (384)
                      +|+||.+||++.+..
T Consensus       220 ~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          220 QGLITIKDIEKVIEF  234 (511)
T ss_dssp             EEEEEHHHHHHHHHC
T ss_pred             eeeccHHHHHHhhhc
Confidence            999999999999864

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.40  E-value=1.3e-12  Score=132.87  Aligned_cols=128  Identities=17%  Similarity=0.302  Sum_probs=105.0

Q ss_pred             HHHHHhh--hhccccccCCCCCcEEEEecCccHHHHHHHHHHc-----CCCeeeeeeCCCCeEEEEeehHHHHHHHHHhc
Q 016718          146 DRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (384)
Q Consensus       146 ~~~~~~l--~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~-----~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~  218 (384)
                      ..+++.+  ...++.++|  ..+++++++++++.+|++.|.++     ++..+||+|+ +++++|+||.+|++..     
T Consensus       144 ~~i~~~l~~~~~~v~~iM--~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~-~~~lvGiVt~~Dll~~-----  215 (473)
T 2zy9_A          144 AEVEALARYEEDEAGGLM--TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA-----  215 (473)
T ss_dssp             HHHHHHHTSCTTBSTTTC--BSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT-TSBEEEEEEHHHHHHS-----
T ss_pred             HHHHHHhcCCCCCHHHhC--CCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC-CCcEEEEEEHHHHhcC-----
Confidence            3344444  467889999  56899999999999999999997     5899999996 5899999999999641     


Q ss_pred             cCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcc
Q 016718          219 TNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ  298 (384)
Q Consensus       219 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~  298 (384)
                       .. ..        ++   .                .+|+++++++++++++.+|+++|.+++++++||+|+   +|   
T Consensus       216 -~~-~~--------~v---~----------------dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe---~g---  260 (473)
T 2zy9_A          216 -DP-RT--------RV---A----------------EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE---EG---  260 (473)
T ss_dssp             -CT-TS--------BG---G----------------GTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECT---TS---
T ss_pred             -CC-CC--------cH---H----------------HHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC---CC---
Confidence             10 00        00   1                147788999999999999999999999999999983   46   


Q ss_pred             cEEEEeeHHHHHHHHHhh
Q 016718          299 EILYLASLSDILKCICRH  316 (384)
Q Consensus       299 ~lvGiit~~dil~~l~~~  316 (384)
                      +++|+||..|+++.+...
T Consensus       261 ~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          261 RLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             BEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEEehHhhHHHHHHH
Confidence            899999999999998754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.40  E-value=1.2e-13  Score=141.39  Aligned_cols=163  Identities=15%  Similarity=0.148  Sum_probs=24.2

Q ss_pred             hhhcccccc-CCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhh
Q 016718          152 LSTHTVYEL-LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEE  228 (384)
Q Consensus       152 l~~~~~~dv-mp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~  228 (384)
                      +.....+++ |  ..+++++++++|+.+|+++|.+++++.+||+|++  .++++|+||.+|++..  .  ..   .   +
T Consensus        93 v~~V~~~e~gM--~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~--~~---~---~  160 (503)
T 1me8_A           93 VHAVKNFKAGF--VVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L--TQ---T---E  160 (503)
T ss_dssp             HHHHHTTTC-----------------------------------------------------------------------
T ss_pred             HhhhhhcccCc--ccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h--cc---c---c
Confidence            344556677 7  4488999999999999999999999999999952  2799999999999642  0  00   0   0


Q ss_pred             hhhhhHHHHHHHHHhhccccccCCCCCCCCCC--ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeH
Q 016718          229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  306 (384)
Q Consensus       229 l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~--~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~  306 (384)
                            ..+.+                +|+++  ++++++++++.+|+++|.+++++++||+|+   +|   +++||||.
T Consensus       161 ------~~V~d----------------iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe---~g---~lvGiIT~  212 (503)
T 1me8_A          161 ------TKVSD----------------MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD---DQ---HLRYIVFR  212 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------CcHHH----------------HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEe
Confidence                  00111                36666  899999999999999999999999999983   46   89999999


Q ss_pred             HHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeee
Q 016718          307 SDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQ  377 (384)
Q Consensus       307 ~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV  377 (384)
                      +||++.+......        ..+     .+.++         .-..+.. ....+.++.|.+.++..+.|
T Consensus       213 ~Dil~~~~~~~~~--------~d~-----~~~l~---------v~a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          213 KDYDRSQVCHNEL--------VDS-----QKRYL---------VGAGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             ---------CCCC--------BCT-----TSCBC---------CEEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             cHHHHhhhcccch--------hcc-----ccccc---------cccccCc-hhHHHHHHHHHhhhccceEE
Confidence            9999988643210        111     11211         1123444 56667788888888877665

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.35  E-value=2.6e-12  Score=112.53  Aligned_cols=95  Identities=9%  Similarity=0.001  Sum_probs=80.6

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|+  ++++++++++++.+|+.+|.+++++++||+|+  +.|   +++|+||.+|+++++....          +.    
T Consensus        47 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~----  107 (172)
T 3lhh_A           47 LMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD---DMVGIISAKQLLSESIAGE----------RL----  107 (172)
T ss_dssp             TSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT---SEEEEEEHHHHHHHHHTTC----------CC----
T ss_pred             hCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---eEEEEEEHHHHHHHHhhcC----------cc----
Confidence            687  78999999999999999999999999999983  215   8999999999999876421          11    


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       ++++       +| ++++++.+++++.+|+++|.+++++.+||+
T Consensus       108 -~v~~-------im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVv  143 (172)
T 3lhh_A          108 -ELVD-------LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVV  143 (172)
T ss_dssp             -CGGG-------GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEE
T ss_pred             -cHHH-------Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEE
Confidence             2233       34 588999999999999999999999999997

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.33  E-value=3.9e-12  Score=108.12  Aligned_cols=95  Identities=15%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|++  +++++++++++.+|+.+|.+++++++||+|+  +.|   +++|+||.+|+++++....          +.    
T Consensus        28 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~----   88 (148)
T 3lv9_A           28 IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD---DILGFVHIRDLYNQKINEN----------KI----   88 (148)
T ss_dssp             TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------CC----
T ss_pred             ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhcCC----------Cc----
Confidence            5776  8999999999999999999999999999983  215   8999999999999886542          11    


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       ++++       +| ++++++.+++++.+|+++|.+++++++||+
T Consensus        89 -~v~~-------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  124 (148)
T 3lv9_A           89 -ELEE-------IL-RDIIYISENLTIDKALERIRKEKLQLAIVV  124 (148)
T ss_dssp             -CGGG-------TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             -cHHH-------hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEE
Confidence             2223       34 588999999999999999999999999997

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.31  E-value=4.1e-12  Score=108.24  Aligned_cols=98  Identities=14%  Similarity=0.146  Sum_probs=81.9

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|++  +++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++....       ...+.    
T Consensus        33 im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~~~~~----   95 (149)
T 3k2v_A           33 IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DM---NIIGIFTDGDLRRVFDTGV-------DMRDA----   95 (149)
T ss_dssp             TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TC---BEEEEEEHHHHHHHHCSSS-------CCTTC----
T ss_pred             HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---cEEEEecHHHHHHHHhcCC-------CcccC----
Confidence            5788  8999999999999999999999999999983   36   8999999999999875421       11222    


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       +++++       |.++++++++++++.+|+++|.+++++++||+
T Consensus        96 -~v~~~-------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  132 (149)
T 3k2v_A           96 -SIADV-------MTRGGIRIRPGTLAVDALNLMQSRHITCVLVA  132 (149)
T ss_dssp             -BHHHH-------SEESCCEECTTCBHHHHHHHHHHHTCSEEEEE
T ss_pred             -cHHHH-------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence             23333       34688999999999999999999999999997

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.31  E-value=5.7e-12  Score=108.87  Aligned_cols=105  Identities=13%  Similarity=0.129  Sum_probs=83.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCC-ccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQQPVSSI  334 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~-~~~~~~~v~~l  334 (384)
                      +|+++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++...+...... .....     .
T Consensus        10 im~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~-----~   78 (160)
T 2o16_A           10 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFE-----T   78 (160)
T ss_dssp             TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC---------CC-----C
T ss_pred             HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHHhhcccccccchhcc-----c
Confidence            57888999999999999999999999999999983   36   8999999999999987654321000 00111     1


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +       +.++|.++++++++++++.+|+++|.+++++++||+
T Consensus        79 ~-------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  115 (160)
T 2o16_A           79 P-------LFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVV  115 (160)
T ss_dssp             B-------HHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEE
T ss_pred             C-------HHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEE
Confidence            2       334456799999999999999999999999999997

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.30  E-value=4.3e-12  Score=103.85  Aligned_cols=94  Identities=14%  Similarity=0.197  Sum_probs=80.8

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+|+++++.....                +
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~~----------------~   63 (122)
T 3kpb_A            6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE---HG---KLVGIITSWDIAKALAQNKK----------------T   63 (122)
T ss_dssp             HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT---TS---BEEEEECHHHHHHHHHTTCC----------------B
T ss_pred             hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHHHHHHhccc----------------C
Confidence            37888999999999999999999999999999983   46   89999999999998864210                2


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++++       |.+++.++.+++++.+|+++|.+++++++||+
T Consensus        64 v~~~-------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv   99 (122)
T 3kpb_A           64 IEEI-------MTRNVITAHEDEPVDHVAIKMSKYNISGVPVV   99 (122)
T ss_dssp             GGGT-------SBSSCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHH-------hcCCCeEECCCCCHHHHHHHHHHhCCCeEEEE
Confidence            2333       34688999999999999999999999999997

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.30  E-value=3.9e-12  Score=105.81  Aligned_cols=96  Identities=14%  Similarity=0.115  Sum_probs=79.8

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|+  .+++++++++++.+|+++|.+++++++||+|+  +.|   +++|+||.+|+++++.....         +     
T Consensus        11 iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~~~---------~-----   71 (130)
T 3i8n_A           11 VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD---NIIGFVHRLELFKMQQSGSG---------Q-----   71 (130)
T ss_dssp             TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT---CEEEECCHHHHHHHHHTTTT---------T-----
T ss_pred             CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---cEEEEEEHHHHHHHHhcCCC---------c-----
Confidence            566  56789999999999999999999999999983  225   89999999999999864321         1     


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .+++++|        ++++++.+++++.+|+++|.+++++.+||+
T Consensus        72 ~~v~~~m--------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv  108 (130)
T 3i8n_A           72 KQLGAVM--------RPIQVVLNNTALPKVFDQMMTHRLQLALVV  108 (130)
T ss_dssp             SBHHHHS--------EECCEEETTSCHHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHh--------cCCcCcCCCCcHHHHHHHHHHcCCeEEEEE
Confidence            2333443        367899999999999999999999999997

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.30  E-value=1.6e-11  Score=125.27  Aligned_cols=118  Identities=19%  Similarity=0.239  Sum_probs=98.0

Q ss_pred             ccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeC-CCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       157 ~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~-~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      +.++|  ..+++++++++++.+|+++|.++++..+||+|. +.++++|+||.+|++..     ... ..        ++ 
T Consensus        92 ~~~im--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~-----~~~-~~--------~v-  154 (491)
T 1zfj_A           92 SENGV--IIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-----SDY-NA--------PI-  154 (491)
T ss_dssp             HTTTT--SSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----SCS-SS--------BT-
T ss_pred             HHhcC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----ccC-CC--------cH-
Confidence            36788  457889999999999999999999999999982 26899999999998632     010 00        00 


Q ss_pred             HHHHHHHhhccccccCCCCCCCCC-CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPR-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~-~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                                        ..+|++ +++++++++++.+++++|.+++++++||+|.   +|   +++|+||..||++.+.
T Consensus       155 ------------------~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~---~g---~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          155 ------------------SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN---SG---RLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ------------------TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT---TS---BEEEEEEHHHHHHHHH
T ss_pred             ------------------HHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEHHHHHHHHh
Confidence                              114777 8999999999999999999999999999983   46   8999999999999987


Q ss_pred             h
Q 016718          315 R  315 (384)
Q Consensus       315 ~  315 (384)
                      .
T Consensus       211 ~  211 (491)
T 1zfj_A          211 F  211 (491)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.29  E-value=3.8e-12  Score=110.10  Aligned_cols=98  Identities=16%  Similarity=0.190  Sum_probs=78.7

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccc
Q 016718          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (384)
Q Consensus       258 ~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig  337 (384)
                      ..+++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++......        .....+.+  
T Consensus        24 ~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---~~---~lvGiit~~Di~~~~~~~~~~--------~~~~~~~~--   87 (156)
T 3k6e_A           24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EK---QFVGTIGLRDIMAYQMEHDLS--------QEIMADTD--   87 (156)
T ss_dssp             TTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----C---BEEEEEEHHHHHHHHHHHTCC--------HHHHTTSB--
T ss_pred             hhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEecchhhhhhhcccc--------cccccccC--
Confidence            468999999999999999999999999999983   36   899999999999998764311        01111222  


Q ss_pred             ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                           ++++|.++++++++++++.+|+++|.++++  +||+
T Consensus        88 -----v~~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVV  121 (156)
T 3k6e_A           88 -----IVHMTKTDVAVVSPDFTITEVLHKLVDESF--LPVV  121 (156)
T ss_dssp             -----GGGTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEE
T ss_pred             -----HHHhhcCCceecccccHHHHHHHHHHHcCC--eEEE
Confidence                 334456899999999999999999998876  8886

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.28  E-value=1.3e-11  Score=101.29  Aligned_cols=97  Identities=13%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|.++++++.+++++.+|+++|.+++++++||+|+    |   +++|+||.+|+++++.....       ..+.     +
T Consensus         6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~---~~~G~it~~dl~~~~~~~~~-------~~~~-----~   66 (125)
T 1pbj_A            6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE----G---VRVGIVTTWDVLEAIAEGDD-------LAEV-----K   66 (125)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET----T---EEEEEEEHHHHHHHHHHTCC-------TTTS-----B
T ss_pred             hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeC----C---eeEEEEeHHHHHHHHhcCCc-------cccc-----C
Confidence            36788999999999999999999999999999972    6   89999999999988765321       1122     2


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++++       |.+++.++.+++++.+|+++|.+++++++||+
T Consensus        67 v~~~-------m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv  102 (125)
T 1pbj_A           67 VWEV-------MERDLVTISPRATIKEAAEKMVKNVVWRLLVE  102 (125)
T ss_dssp             HHHH-------CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHH-------cCCCCeEECCCCCHHHHHHHHHhcCCcEEEEE
Confidence            3333       34688999999999999999999999999996

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.27  E-value=7.9e-12  Score=107.75  Aligned_cols=97  Identities=11%  Similarity=0.086  Sum_probs=79.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++ +++.+++++.+|+.+|.+++++++||+|.   +|   +++|+||.+|+++++....       .....     +
T Consensus        22 im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~~~~~-----~   82 (159)
T 3fv6_A           22 FQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDR---DA---VLVGVLSRKDLLRASIGQQ-------ELTSV-----P   82 (159)
T ss_dssp             SCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHTSCS-------CTTTC-----B
T ss_pred             HcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---cEEEEEeHHHHHHHhhccC-------cccCc-----C
Confidence            57775 59999999999999999999999999983   36   8999999999999875321       11122     2


Q ss_pred             ccccccccccCCCC--CceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~--~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++++       |.+  +++++.+++++.+|+++|.+++++++||+
T Consensus        83 v~~~-------m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  120 (159)
T 3fv6_A           83 VHII-------MTRMPNITVCRREDYVMDIAKHLIEKQIDALPVI  120 (159)
T ss_dssp             GGGT-------SEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHH-------HcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence            3333       345  78999999999999999999999999997

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.27  E-value=1.7e-11  Score=106.28  Aligned_cols=96  Identities=19%  Similarity=0.259  Sum_probs=80.5

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++......      ....     +++ 
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~------~~~~-----~v~-   96 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DG---VVLGIFTERDLVKAVAGQGAA------SLQQ-----SVS-   96 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHGGG------GGTS-----BGG-
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHHhcCCc------cccC-----CHH-
Confidence            47899999999999999999999999999983   36   899999999999998865311      1122     223 


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            ++|.++++++.+++++.+|+++|.+++++++||+
T Consensus        97 ------~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  130 (165)
T 3fhm_A           97 ------VAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVE  130 (165)
T ss_dssp             ------GTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEE
T ss_pred             ------HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence                  3345788999999999999999999999999997

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.26  E-value=5.9e-12  Score=107.82  Aligned_cols=95  Identities=9%  Similarity=0.094  Sum_probs=79.8

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEE-ecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccc
Q 016718          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPII-HSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  332 (384)
Q Consensus       256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVv-d~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~  332 (384)
                      +|++  +++++++++++.+|+.+|.+++++++||+ |+  ++|   +++|+||.+|+++++....          +    
T Consensus        25 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~--~~~---~lvGivt~~dl~~~~~~~~----------~----   85 (153)
T 3oco_A           25 VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADN--DKD---KIIGYAYNYDIVRQARIDD----------K----   85 (153)
T ss_dssp             HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETT--EEE---EEEEEEEHHHHHHHHHHHT----------T----
T ss_pred             EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECC--CCC---cEEEEEEHHHHHhHHhcCC----------C----
Confidence            3664  78999999999999999999999999999 52  225   8999999999999987532          1    


Q ss_pred             cccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          333 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       333 ~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       .++++       +| ++++++.+++++.+|+++|.+++++++||+
T Consensus        86 -~~v~~-------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVv  122 (153)
T 3oco_A           86 -AKIST-------IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVI  122 (153)
T ss_dssp             -SBGGG-------TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEE
T ss_pred             -CcHHH-------Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence             12233       34 588999999999999999999999999997

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.26  E-value=1.4e-11  Score=102.47  Aligned_cols=96  Identities=15%  Similarity=0.219  Sum_probs=81.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|.++++++.+++++.+|+.+|.+++++++||+|+    |   +++|+||.+|+++++.....        .+.     +
T Consensus         9 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~---~~~Givt~~dl~~~~~~~~~--------~~~-----~   68 (133)
T 2ef7_A            9 YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG----N---KPVGIITERDIVKAIGKGKS--------LET-----K   68 (133)
T ss_dssp             TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHHHTTCC--------TTC-----B
T ss_pred             hccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEEC----C---EEEEEEcHHHHHHHHhcCCC--------ccc-----C
Confidence            57888999999999999999999999999999972    6   89999999999998765321        112     2


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++++       |.+++.++++++++.+|+++|.+++++++||+
T Consensus        69 v~~~-------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv  104 (133)
T 2ef7_A           69 AEEF-------MTASLITIREDSPITGALALMRQFNIRHLPVV  104 (133)
T ss_dssp             GGGT-------SEECCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHH-------cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence            3333       34688999999999999999999999999997

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.26  E-value=3.2e-12  Score=107.45  Aligned_cols=96  Identities=11%  Similarity=0.108  Sum_probs=78.5

Q ss_pred             CC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccc
Q 016718          257 CP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (384)
Q Consensus       257 m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (384)
                      |+  ++++++.+++++.+|+.+|.+++++++||+|+  +.|   +++|+||.+|+++++....        ..+     .
T Consensus         9 M~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~--------~~~-----~   70 (136)
T 3lfr_A            9 MVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD---DVLGVLLAKDLLPLILKAD--------GDS-----D   70 (136)
T ss_dssp             SEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGGSSS--------GGG-----C
T ss_pred             cccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHhcc--------CCC-----c
Confidence            55  67899999999999999999999999999984  225   8999999999998864211        011     2


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +++++|        ++++++.+++++.+|+++|.+++++.+||+
T Consensus        71 ~v~~~m--------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv  106 (136)
T 3lfr_A           71 DVKKLL--------RPATFVPESKRLNVLLREFRANHNHMAIVI  106 (136)
T ss_dssp             CGGGTC--------BCCCEEETTCBHHHHHHHHHHHTCCEEEEE
T ss_pred             CHHHHc--------CCCeEECCCCcHHHHHHHHHhcCCeEEEEE
Confidence            334444        258999999999999999999999999997

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.26  E-value=1.1e-11  Score=106.64  Aligned_cols=95  Identities=17%  Similarity=0.203  Sum_probs=78.9

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|++  +++++++++++.+|+.+|.+++++++||+|+  +.+   +++|+||.+|+++++...          .+     
T Consensus        43 iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~----------~~-----  102 (156)
T 3oi8_A           43 AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD---EVLGILHAKDLLKYMFNP----------EQ-----  102 (156)
T ss_dssp             TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGSSCG----------GG-----
T ss_pred             eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHcC----------Cc-----
Confidence            5765  7899999999999999999999999999984  324   799999999999875321          11     


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .+++++|        ++++++.+++++.+|+++|.+++++.+||+
T Consensus       103 ~~v~~im--------~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vv  139 (156)
T 3oi8_A          103 FHLKSIL--------RPAVFVPEGKSLTALLKEFREQRNHMAIVI  139 (156)
T ss_dssp             CCHHHHC--------BCCCEEETTSBHHHHHHHHHHTTCCEEEEE
T ss_pred             ccHHHHc--------CCCEEECCCCCHHHHHHHHHhcCCeEEEEE
Confidence            2334444        257899999999999999999999999997

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.26  E-value=2.8e-12  Score=106.27  Aligned_cols=95  Identities=11%  Similarity=0.102  Sum_probs=77.6

Q ss_pred             CC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccc
Q 016718          257 CP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (384)
Q Consensus       257 m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (384)
                      |+  ++++++++++++.+|+++|.+++++++||+|+  +.|   +++|+||.+|+++++....         .+     .
T Consensus         9 M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~---------~~-----~   69 (127)
T 3nqr_A            9 MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EA-----F   69 (127)
T ss_dssp             SEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGSTTC---------CC-----C
T ss_pred             cccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhccC---------CC-----C
Confidence            56  34899999999999999999999999999983  225   8999999999998764321         11     2


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +++++|        ++++++.+++++.+|+++|.+++++++||+
T Consensus        70 ~v~~~m--------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  105 (127)
T 3nqr_A           70 SMDKVL--------RTAVVVPESKRVDRMLKEFRSQRYHMAIVI  105 (127)
T ss_dssp             CHHHHC--------BCCCEEETTCBHHHHHHHHHHTTCCEEEEE
T ss_pred             CHHHHc--------CCCeEECCCCcHHHHHHHHHhcCCeEEEEE
Confidence            333443        256899999999999999999999999997

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.25  E-value=6.7e-12  Score=104.68  Aligned_cols=95  Identities=5%  Similarity=0.056  Sum_probs=77.9

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++++++++.+|+++|.+++++++||+|+  ++|   +++|+||.+|+++++....       .+..     ..+++
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~--~~~---~lvGivt~~dl~~~~~~~~-------~~~~-----~~v~~   74 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD--SLD---DAISMLRVREAYRLMTEKK-------EFTK-----EIMLR   74 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEESS--SGG---GEEEEEEHHHHHHHHTSSS-------CCCH-----HHHHH
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCC---cEEEEEEHHHHHHHHhccC-------ccch-----hhHHH
Confidence            46899999999999999999999999999963  235   8999999999999875421       0111     22333


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +|        ++++++.+++++.+|+++|.+++++.+||+
T Consensus        75 ~m--------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv  106 (130)
T 3hf7_A           75 AA--------DEIYFVPEGTPLSTQLVKFQRNKKKVGLVV  106 (130)
T ss_dssp             HS--------BCCCEEETTCBHHHHHHHHHHHCCCEEEEE
T ss_pred             hc--------cCCeEeCCCCcHHHHHHHHHhcCCeEEEEE
Confidence            33        478899999999999999999999999996

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.24  E-value=3.2e-11  Score=101.44  Aligned_cols=97  Identities=16%  Similarity=0.203  Sum_probs=80.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCC-CCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA-GSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~-g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (384)
                      +|+++++++.+++++.+|+++|.+++++++||+|+  ++ .   +++|+||.+|+++++.....        .+     .
T Consensus        10 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~---~~~Givt~~dl~~~~~~~~~--------~~-----~   71 (141)
T 2rih_A           10 LLKRPPVSLPETATIREVATELAKNRVGLAVLTAR--DNPK---RPVAVVSERDILRAVAQRLD--------LD-----G   71 (141)
T ss_dssp             GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEE---EEEEEEEHHHHHHHHHTTCC--------TT-----S
T ss_pred             HhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC--CCcc---eeEEEEEHHHHHHHHhcCCC--------CC-----C
Confidence            57889999999999999999999999999999984  21 1   59999999999998764321        11     2


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +++++       |.++++++.++ ++.+|+++|.+++++++||+
T Consensus        72 ~v~~~-------m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vv  107 (141)
T 2rih_A           72 PAMPI-------ANSPITVLDTD-PVHVAAEKMRRHNIRHVVVV  107 (141)
T ss_dssp             BSGGG-------CBCCCEEETTS-BHHHHHHHHHHHTCSEEEEE
T ss_pred             CHHHH-------cCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEE
Confidence            23333       45789999999 99999999999999999997

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.24  E-value=1.2e-11  Score=114.28  Aligned_cols=54  Identities=17%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                      +|+++++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||..|+++++..
T Consensus        12 im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A           12 LEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG---NN---HLLGMLSTSNITATYMD   65 (245)
T ss_dssp             SCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHHC
T ss_pred             hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHH
Confidence            68899999999999999999999999999999983   36   89999999999999864

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.24  E-value=5e-12  Score=104.77  Aligned_cols=96  Identities=15%  Similarity=0.090  Sum_probs=80.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|.+++.++.+++++.+|+++|.+++++++||+|   + |   +++|+||.+|+++++.....        .     +.+
T Consensus        10 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~-~---~~~Givt~~dl~~~~~~~~~--------~-----~~~   69 (128)
T 3gby_A           10 LAETDYPVFTLGGSTADAARRLAASGCACAPVLD---G-E---RYLGMVHLSRLLEGRKGWPT--------V-----KEK   69 (128)
T ss_dssp             GCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHTTCSSSCC--------T-----TCB
T ss_pred             hhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEE---C-C---EEEEEEEHHHHHHHHhhCCc--------c-----cCc
Confidence            5788899999999999999999999999999998   3 6   89999999999976532110        0     122


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +++       +|.+++.++.+++++.+|+++|.+++++++||+
T Consensus        70 v~~-------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVv  105 (128)
T 3gby_A           70 LGE-------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLA  105 (128)
T ss_dssp             CCG-------GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEE
T ss_pred             HHH-------HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEE
Confidence            333       345788999999999999999999999999997

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.23  E-value=2.8e-11  Score=106.85  Aligned_cols=99  Identities=11%  Similarity=0.062  Sum_probs=82.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+||++++......      ..     +.+
T Consensus        14 im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g---~~vGivt~~dl~~~~~~~~~~------~~-----~~~   76 (184)
T 1pvm_A           14 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK------PD-----EVP   76 (184)
T ss_dssp             TSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC------GG-----GSB
T ss_pred             hcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHhhcccC------cc-----cCC
Confidence            57889999999999999999999999999999973   36   899999999999987642100      11     122


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +++       +|.++++++.+++++.+|+++|.+++++.+||+
T Consensus        77 v~~-------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  112 (184)
T 1pvm_A           77 IRL-------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVV  112 (184)
T ss_dssp             GGG-------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEE
T ss_pred             HHH-------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence            333       445789999999999999999999999999997

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.22  E-value=1.7e-11  Score=102.24  Aligned_cols=95  Identities=16%  Similarity=0.210  Sum_probs=78.2

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++++++++.+|+.+|.+++++++||+|+    |   +++|+||.+|+++.+..+..      ...+     .++  
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~---~~~Givt~~dl~~~~~~~~~------~~~~-----~~v--   76 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMKD----E---KLVGILTERDFSRKSYLLDK------PVKD-----TQV--   76 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHGGGSSS------CGGG-----SBG--
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEEC----C---EEEEEEehHHHHHHHHHcCC------Cccc-----CCH--
Confidence            78899999999999999999999999999972    6   89999999999976543210      0111     222  


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                           +++|.+++.++++++++.+|+++|.+++++++||+
T Consensus        77 -----~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVv  111 (135)
T 2rc3_A           77 -----KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVL  111 (135)
T ss_dssp             -----GGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE
T ss_pred             -----HHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEE
Confidence                 33445789999999999999999999999999997

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.22  E-value=5.1e-11  Score=102.30  Aligned_cols=108  Identities=13%  Similarity=0.142  Sum_probs=81.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCe-eeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccc---ccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVAT-VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ---QPV  331 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~-lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~---~~v  331 (384)
                      +|+++++++.+++++.+|+++|.++++++ +||+|+    +   +++|+||.+|+++++...+.........+.   ...
T Consensus        21 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   93 (157)
T 1o50_A           21 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRL   93 (157)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCC
T ss_pred             cccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC----C---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHH
Confidence            58899999999999999999999999999 999983    3   699999999999987643100000000000   001


Q ss_pred             ccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          332 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       332 ~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .+.+       ++++|.+ ++++++++++.+|+++|.+++++++||+
T Consensus        94 ~~~~-------v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVv  132 (157)
T 1o50_A           94 IAKN-------ASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVV  132 (157)
T ss_dssp             SSCB-------HHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             cCCc-------HHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEE
Confidence            1122       3445567 8999999999999999999999999997

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.22  E-value=2.2e-11  Score=102.23  Aligned_cols=105  Identities=15%  Similarity=0.136  Sum_probs=78.8

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++.....      ...+.+     
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~------~~~~~~-----   78 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIY------NDLSLS-----   78 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCSB-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CC---cEEEEEcHHHHHHHhccccc------ccCCcc-----
Confidence            47789999999999999999999999999999983   36   89999999999998764210      111223     


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++++|.+-. .-.++++++.+++++.+|+++|.+++++++||+
T Consensus        79 v~~~m~~~~-~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  120 (144)
T 2nyc_A           79 VGEALMRRS-DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVV  120 (144)
T ss_dssp             HHHHHHHCC-------CEECTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHhcCc-cccCCCeEECCCCcHHHHHHHHHHCCCCEEEEE
Confidence            333331000 000168999999999999999999999999997

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.22  E-value=9.5e-12  Score=103.44  Aligned_cols=93  Identities=13%  Similarity=0.164  Sum_probs=77.5

Q ss_pred             CC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccc
Q 016718          257 CP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (384)
Q Consensus       257 m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (384)
                      |+  .+++++++++++.+|+.+|.+++++++||+|+  +.|   +++|+||.+|+++++...           +     .
T Consensus        11 M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~-----------~-----~   69 (129)
T 3jtf_A           11 MVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD---NIIGILLAKDLLRYMLEP-----------A-----L   69 (129)
T ss_dssp             CEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT---CEEEEEEGGGGGGGGTCT-----------T-----S
T ss_pred             CccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC---cEEEEEEHHHHHhHhccC-----------C-----c
Confidence            55  67899999999999999999999999999983  225   899999999999875310           1     2


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .++++|        ++++++.+++++.+|+++|.+++++.+||+
T Consensus        70 ~v~~~m--------~~~~~v~~~~~l~~~~~~m~~~~~~~~pVv  105 (129)
T 3jtf_A           70 DIRSLV--------RPAVFIPEVKRLNVLLREFRASRNHLAIVI  105 (129)
T ss_dssp             CGGGGC--------BCCCEEETTCBHHHHHHHHHTSSCCEEEEE
T ss_pred             CHHHHh--------CCCeEeCCCCcHHHHHHHHHhcCCeEEEEE
Confidence            233444        257899999999999999999999999997

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.21  E-value=9.1e-12  Score=127.20  Aligned_cols=117  Identities=11%  Similarity=0.148  Sum_probs=82.4

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      +..++|.  .+++++++++++.+|.++|.+++++.+||+|+ .++++|+||.+||..     ... ...        .+ 
T Consensus        90 ~~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~~-----~~~-~~~--------~v-  151 (496)
T 4fxs_A           90 IFEAGVV--THPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVRF-----VTD-LTK--------SV-  151 (496)
T ss_dssp             HCCC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHTT-----CCC-TTS--------BG-
T ss_pred             ccccccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHhh-----ccc-CCC--------cH-
Confidence            4567783  57889999999999999999999999999996 689999999999841     110 000        01 


Q ss_pred             HHHHHHHhhccccccCCCCCCCC-C-CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCP-R-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~-~-~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                        .                ++|+ + +++++++++++.+|+++|.+++++++||+|+   +|   +|+|+||..||++..
T Consensus       152 --~----------------diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe---~G---~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          152 --A----------------AVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND---EF---QLKGMITAKDFHKAE  207 (496)
T ss_dssp             --G----------------GTSEEGGGCCEEECC----CGGGTCC---CCCEEEECT---TS---BCCEEECCC-----C
T ss_pred             --H----------------HHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEeehHhHHHHhh
Confidence              1                1366 3 5899999999999999999999999999983   47   899999999999975


Q ss_pred             H
Q 016718          314 C  314 (384)
Q Consensus       314 ~  314 (384)
                      .
T Consensus       208 ~  208 (496)
T 4fxs_A          208 S  208 (496)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.21  E-value=4.7e-11  Score=99.83  Aligned_cols=97  Identities=15%  Similarity=0.211  Sum_probs=78.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++.+.....       ...     .+
T Consensus        12 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~-----~~   73 (138)
T 2yzi_A           12 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL-------PYD-----IP   73 (138)
T ss_dssp             TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC-------CTT-----SB
T ss_pred             HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHhcCC-------ccc-----CC
Confidence            57889999999999999999999999999999983   36   89999999999854332110       111     12


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++       ++|.++++++++++++.+|+++|.+++++++ |+
T Consensus        74 v~-------~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vv  108 (138)
T 2yzi_A           74 VE-------RIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LI  108 (138)
T ss_dssp             GG-------GTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EE
T ss_pred             HH-------HHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EE
Confidence            33       3345789999999999999999999999999 76

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.20  E-value=1.7e-11  Score=105.34  Aligned_cols=110  Identities=14%  Similarity=0.085  Sum_probs=79.8

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++.+++++.+|+++|.+++++++||+|+ .++|   +++|+||..|+++++.......   ......++.++.
T Consensus        18 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~-~~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~~~v~~~m   90 (164)
T 2pfi_A           18 FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES-TESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQQCLQDIL   90 (164)
T ss_dssp             HCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHC----------CCCCBHHHHH
T ss_pred             HcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec-CCCC---EEEEEEEHHHHHHHHHhhcccc---CCcccchhhhhh
Confidence            36788999999999999999999999999999983 1136   8999999999999886432110   111122233222


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .....      ....++++.+++++.+|+++|.+++++++||+
T Consensus        91 ~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVv  127 (164)
T 2pfi_A           91 ARGCP------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVT  127 (164)
T ss_dssp             HTTCC------CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEE
T ss_pred             ccccc------ccCCceEECCCCcHHHHHHHHHHhCCCEEEEE
Confidence            11100      00117899999999999999999999999997

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.20  E-value=5.8e-12  Score=106.68  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|++  +++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++.....     ...+.. ...
T Consensus        10 im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~~-----~~~~~~-~~~   77 (152)
T 4gqw_A           10 FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE---DW---KLVGLVSDYDLLALDSGDST-----WKTFNA-VQK   77 (152)
T ss_dssp             TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHTTCC----C-----CHHHHH-HHT
T ss_pred             ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC---CC---eEEEEEEHHHHHHhhcccCc-----ccchHH-HHH
Confidence            4666  7999999999999999999999999999983   36   89999999999876442210     000000 000


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +........++++|.++++++.+++++.+|+++|.+++++++||+
T Consensus        78 ~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv  122 (152)
T 4gqw_A           78 LLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVV  122 (152)
T ss_dssp             C-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEE
T ss_pred             HHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEE
Confidence            000000012334445688999999999999999999999999997

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.20  E-value=2.5e-11  Score=103.12  Aligned_cols=100  Identities=12%  Similarity=0.166  Sum_probs=78.6

Q ss_pred             CC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccc
Q 016718          257 CP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (384)
Q Consensus       257 m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (384)
                      |+  ++++++.+++++.+|+.+|.+++++++||+|.   +|   +++|+||.+|+++++......     .  .......
T Consensus        21 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~-----~--~~~~~~~   87 (150)
T 3lqn_A           21 MISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP---MY---KLHGLISTAMILDGILGLERI-----E--FERLEEM   87 (150)
T ss_dssp             SEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHTBCSSSB-----C--GGGGGGC
T ss_pred             ccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---CEEEEEEHHHHHHHHHhhccc-----c--hhHHhcC
Confidence            55  56899999999999999999999999999983   36   899999999999987532110     0  0000112


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +       ++++|.++++++.+++++.+|+++|.++++  +||+
T Consensus        88 ~-------v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vv  122 (150)
T 3lqn_A           88 K-------VEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAV  122 (150)
T ss_dssp             B-------GGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEE
T ss_pred             C-------HHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEE
Confidence            2       334456789999999999999999999997  8886

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.19  E-value=1.2e-11  Score=102.83  Aligned_cols=97  Identities=11%  Similarity=0.135  Sum_probs=79.2

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH-HHHhhcccCCCCcccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~-~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      |+++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+|+++ ++.....       ..+     .+
T Consensus        14 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~-----~~   75 (133)
T 1y5h_A           14 MNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD-------PNT-----AT   75 (133)
T ss_dssp             SEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC-------TTT-----SB
T ss_pred             hcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CC---eEEEEEeHHHHHHHHHhcCCC-------ccc-----cC
Confidence            6778899999999999999999999999999973   36   8999999999994 5443211       111     23


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++++       |.++++++++++++.+|+++|.+++++++||+
T Consensus        76 v~~~-------m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  111 (133)
T 1y5h_A           76 AGEL-------ARDSIYYVDANASIQEMLNVMEEHQVRRVPVI  111 (133)
T ss_dssp             HHHH-------HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHH-------hcCCCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence            3333       34688999999999999999999999999997

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.18  E-value=3.4e-11  Score=103.15  Aligned_cols=95  Identities=8%  Similarity=0.134  Sum_probs=79.1

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (384)
Q Consensus       259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~  338 (384)
                      ++++++.+++++.+|+++|.+++++++||.|    +|   +++|+||.+|+++++..+...      ..+.     ++++
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~----~~---~~~Givt~~dl~~~~~~~~~~------~~~~-----~v~~   82 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD----GD---DIAGIVTERDYARKVVLQERS------SKAT-----RVEE   82 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEES----SS---SEEEEEEHHHHHHHSGGGTCC------SSSC-----BHHH
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHHhccCC------cccc-----CHHH
Confidence            6789999999999999999999999999964    36   899999999999988654321      1122     2333


Q ss_pred             cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +       |.++++++.+++++.+|+++|.+++++++||+
T Consensus        83 ~-------m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVv  115 (157)
T 4fry_A           83 I-------MTAKVRYVEPSQSTDECMALMTEHRMRHLPVL  115 (157)
T ss_dssp             H-------SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             H-------cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence            3       45688999999999999999999999999997

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.18  E-value=7.6e-11  Score=110.01  Aligned_cols=58  Identities=10%  Similarity=0.137  Sum_probs=51.6

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh
Q 016718          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH  316 (384)
Q Consensus       255 ~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~  316 (384)
                      ++|+++++++.+++++.+|+++|.+++++++||+|+ .++|   +|+||||.+||++++...
T Consensus        17 diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           17 DIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             SSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHH
T ss_pred             HhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHh
Confidence            379999999999999999999999999999999984 2235   799999999999988754

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.18  E-value=2.8e-11  Score=101.11  Aligned_cols=97  Identities=15%  Similarity=0.287  Sum_probs=79.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHH-HHHHHhhcccCCCCccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI-LKCICRHFKHSSSSLPILQQPVSSI  334 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~di-l~~l~~~~~~~~~~~~~~~~~v~~l  334 (384)
                      +|+++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+ ++++....        ..+.     
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~--------~~~~-----   73 (138)
T 2p9m_A           13 VMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD---EN---KVIGIVTTTDIGYNLIRDKY--------TLET-----   73 (138)
T ss_dssp             TSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT---TC---BEEEEEEHHHHHHHHTTTCC--------CSSC-----
T ss_pred             hhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC---CC---eEEEEEEHHHHHHHHHhhcc--------cCCc-----
Confidence            57888999999999999999999999999999983   36   89999999999 88764311        1122     


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCC-----Cceeeec
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGD-----LTLFQQP  378 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~-----is~lPV~  378 (384)
                      ++++       +|.+++.++.+++++.+|+++|.+++     ++++||+
T Consensus        74 ~v~~-------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vv  115 (138)
T 2p9m_A           74 TIGD-------VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVV  115 (138)
T ss_dssp             BHHH-------HSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEE
T ss_pred             CHHH-------HhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEE
Confidence            2233       34568899999999999999999999     9999997

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.18  E-value=1.5e-11  Score=125.39  Aligned_cols=117  Identities=16%  Similarity=0.228  Sum_probs=3.0

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .++.++|  ...++++++++++.+|+++|.+++++.+||+|  .++++|+||.+||....     .   .   +   .  
T Consensus        88 k~~~~~m--~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd--~g~lvGIVt~rDl~~~~-----~---~---~---~--  147 (490)
T 4avf_A           88 KKHETAI--VRDPVTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLRVKP-----N---A---G---D--  147 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCc--ccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEhHHhhhcc-----c---c---C---C--
Confidence            3467888  45788999999999999999999999999999  57999999999984210     0   0   0   0  


Q ss_pred             HHHHHHHHhhccccccCCCCCCCC-C-CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCP-R-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~-~-~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                       .+.+                +|+ + +++++++++++.+|+++|.+++++.+||+|.   +|   +++|+||..||++.
T Consensus       148 -~V~~----------------vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe---~g---~lvGiIT~~Dil~~  204 (490)
T 4avf_A          148 -TVAA----------------IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE---NF---YLRGLVTFRDIEKA  204 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -cHHH----------------HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEehHHhhhh
Confidence             0111                366 4 6899999999999999999999999999983   46   89999999999998


Q ss_pred             HH
Q 016718          313 IC  314 (384)
Q Consensus       313 l~  314 (384)
                      ..
T Consensus       205 ~~  206 (490)
T 4avf_A          205 KT  206 (490)
T ss_dssp             --
T ss_pred             cc
Confidence            64

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.16  E-value=3.4e-12  Score=130.40  Aligned_cols=119  Identities=22%  Similarity=0.331  Sum_probs=7.1

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      ++.++|  ..+++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|++.. .    .   .   +      .
T Consensus        96 ~~~~iM--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~lvGivt~~Dl~~~-~----~---~---~------~  155 (494)
T 1vrd_A           96 KTENGI--IYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVRFE-K----N---L---S------K  155 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcC--ccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC-CCEEEEEEEHHHHHhh-c----C---C---C------C
Confidence            467888  458899999999999999999999999999995 6899999999998641 0    0   0   0      0


Q ss_pred             HHHHHHHhhccccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      .+.+                +|++  +++++++++++.+|+.+|.+++++++||+|+   +|   +++|+||..|+++.+
T Consensus       156 ~v~~----------------im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~---~g---~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          156 KIKD----------------LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK---DN---KLVGLITIKDIMSVI  213 (494)
T ss_dssp             ---------------------------------------------------------------------------CHHHH
T ss_pred             cHHH----------------HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC---CC---eEEEEEEHHHHHhhh
Confidence            1111                3666  8999999999999999999999999999984   46   899999999999997


Q ss_pred             Hhh
Q 016718          314 CRH  316 (384)
Q Consensus       314 ~~~  316 (384)
                      ...
T Consensus       214 ~~~  216 (494)
T 1vrd_A          214 EHP  216 (494)
T ss_dssp             TCT
T ss_pred             ccc
Confidence            643

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.16  E-value=8.4e-11  Score=103.35  Aligned_cols=94  Identities=7%  Similarity=0.071  Sum_probs=79.2

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|+  ++++++.+++++.+|+.+|.++++.++||+|+  +.|   +++|+||.+|+++++....          .     
T Consensus        41 iM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~Dl~~~~~~~~----------~-----  100 (173)
T 3ocm_A           41 IMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD---EVVGIGRAKDLVADLITEG----------R-----  100 (173)
T ss_dssp             TSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------S-----
T ss_pred             hCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---CEEEEEEHHHHHHHHhcCC----------c-----
Confidence            575  57899999999999999999999999999983  225   8999999999999986531          1     


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ..+. .+        ++++++.+++++.+|+++|.+++++.+||+
T Consensus       101 ~~v~-~~--------~~~~~v~~~~~l~~al~~m~~~~~~~~~Vv  136 (173)
T 3ocm_A          101 VRRN-RL--------RDPIIVHESIGILRLMDTLKRSRGQLVLVA  136 (173)
T ss_dssp             CCGG-GS--------BCCCEECGGGCHHHHHHHHHHSTTCCEEEE
T ss_pred             chhH-hc--------CCCeEECCCCcHHHHHHHHHHcCCeEEEEE
Confidence            1222 22        478999999999999999999999999997

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.14  E-value=9.8e-11  Score=102.71  Aligned_cols=114  Identities=9%  Similarity=0.059  Sum_probs=80.0

Q ss_pred             ceEe--CCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCC----Cccccccccccc
Q 016718          261 LVQA--GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS----SLPILQQPVSSI  334 (384)
Q Consensus       261 ~itv--~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~----~~~~~~~~v~~l  334 (384)
                      ++++  .+++++.+|+.+|.+++++++||++++ ++|   +++|+||..|+++++.........    ....+.....+.
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d-~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISETTYSGFPVVVSR-ESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPL  100 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT-TTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCC
T ss_pred             eEEEecCCCccHHHHHHHHHhcCCCceeEEEEC-CCC---eEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCccc
Confidence            7888  999999999999999999999999310 246   899999999999998764211000    000000000000


Q ss_pred             ccc-ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QLG-TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~ig-~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ... .....++++|.++++++.+++++.+|+++|.+++++++||+
T Consensus       101 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv  145 (185)
T 2j9l_A          101 PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVT  145 (185)
T ss_dssp             CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEE
Confidence            000 00112445556789999999999999999999999999997

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.12  E-value=5.9e-12  Score=127.13  Aligned_cols=108  Identities=19%  Similarity=0.296  Sum_probs=0.0

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (384)
                      ..+++.++.+|.+|.++|.+++++++||+|..  .++++||||.+|+--      ..        ..    ..+.     
T Consensus       147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf------~d--------~~----~~V~-----  203 (556)
T 4af0_A          147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF------QD--------AE----TPIK-----  203 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc------cc--------cc----eEhh-----
Confidence            56899999999999999999999999999853  479999999999721      00        00    0011     


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                                 ++|+++++|++.+.++.+|.++|.++++..+||+|.   +|   +|+|+||.+|+++.-
T Consensus       204 -----------evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~---~g---~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          204 -----------SVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS---NG---HLVSLVARSDLLKNQ  256 (556)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             -----------hhcccceEEecCCCCHHHHHHHHHHccccceeEEcc---CC---cEEEEEEechhhhhh
Confidence                       147889999999999999999999999999999984   46   899999999999874

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.11  E-value=6.1e-11  Score=103.46  Aligned_cols=115  Identities=15%  Similarity=0.175  Sum_probs=78.9

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccc---c--
Q 016718          257 CPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ---Q--  329 (384)
Q Consensus       257 m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~---~--  329 (384)
                      |++  +++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+||++++......... ..++.   .  
T Consensus        10 m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~~~~-~~~~~~~~~~~   82 (180)
T 3sl7_A           10 MTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD---NW---TLVGVVSDYDLLALDSISGRSQND-TNLFPDVDSTW   82 (180)
T ss_dssp             SEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHTCC--------------------CC
T ss_pred             cCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---eEEEEEEHHHHHhhhhhccccCCc-ccccccccchh
Confidence            566  7899999999999999999999999999983   46   899999999999754321100000 00000   0  


Q ss_pred             ----ccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          330 ----PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       330 ----~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                          ....+........++++|.++++++++++++.+|+++|.+++++++||+
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  135 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVV  135 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEE
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEE
Confidence                0000000001112445566788999999999999999999999999997

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.11  E-value=1.6e-10  Score=98.68  Aligned_cols=101  Identities=16%  Similarity=0.206  Sum_probs=78.8

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      +|.+  +++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++..... .    .  ......
T Consensus        16 im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~-~----~--~~~~~~   82 (157)
T 2emq_A           16 FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SY---KLHGLISMTMMMDAILGLER-I----E--FERLET   82 (157)
T ss_dssp             TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TC---CEEEEEEHHHHHHHSBCSSS-B----C--GGGGGT
T ss_pred             hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC---CC---CEEEEeeHHHHHHHHhcccc-c----c--hHHhcC
Confidence            5765  8899999999999999999999999999983   36   89999999999987653210 0    0  000011


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .+       +.++|.++++++.+++++.+|+++|.++++  +||+
T Consensus        83 ~~-------v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vv  118 (157)
T 2emq_A           83 MK-------VEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVE  118 (157)
T ss_dssp             CB-------GGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEE
T ss_pred             Cc-------HHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEE
Confidence            22       334456789999999999999999999998  8886

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.09  E-value=5.8e-11  Score=121.08  Aligned_cols=111  Identities=16%  Similarity=0.319  Sum_probs=0.5

Q ss_pred             cccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHH
Q 016718          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW  237 (384)
Q Consensus       158 ~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~  237 (384)
                      .+.|  ..+++++++++++.+|.++|.++++..+||+|.  ++++|+||.+|++.     ...   .           .+
T Consensus        96 ~~~m--~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~-----~~~---~-----------~v  152 (486)
T 2cu0_A           96 ERLI--VEDVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA-----REG---K-----------LV  152 (486)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhcc--ccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc-----CCC---C-----------CH
Confidence            5567  468899999999999999999999999999984  89999999999863     000   0           01


Q ss_pred             HHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          238 KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      .+                +|+++++++++++++.+++++|.+++++++||+|.   +|   +++|+||.+||++.+
T Consensus       153 ~~----------------im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde---~g---~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          153 KE----------------LMTKEVITVPESIEVEEALKIMIENRIDRLPVVDE---RG---KLVGLITMSDLVARK  206 (486)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             HH----------------HccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec---CC---eEEEEEEHHHHHHhh
Confidence            11                36778899999999999999999999999999983   46   899999999999985

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.09  E-value=9.4e-11  Score=106.38  Aligned_cols=92  Identities=10%  Similarity=0.078  Sum_probs=78.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      .|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++.             +.     +
T Consensus        18 ~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~l~Givt~~dl~~~~~-------------~~-----~   73 (213)
T 1vr9_A           18 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLDL-------------DS-----S   73 (213)
T ss_dssp             GCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSCT-------------TS-----B
T ss_pred             hhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---EEEEEEEHHHHHhhcC-------------CC-----c
Confidence            47889999999999999999999999999999983   36   8999999999876431             11     2


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +.       ++|.++++++.+++++.+|+++|.+++++++||+
T Consensus        74 v~-------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  109 (213)
T 1vr9_A           74 VF-------NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVV  109 (213)
T ss_dssp             SG-------GGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEE
T ss_pred             HH-------HHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEE
Confidence            22       3345789999999999999999999999999997

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.08  E-value=1.8e-10  Score=121.43  Aligned_cols=67  Identities=27%  Similarity=0.474  Sum_probs=59.8

Q ss_pred             eeEEEEEeeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCee
Q 016718           20 LVPVRFIWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV   89 (384)
Q Consensus        20 ~~~v~f~w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~   89 (384)
                      ...|.|.|+.+|+.++|+|+||+|.+. .+|++.   ++.|.+++.||||.|+|||+|||+|..||.+|..
T Consensus        16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~~---g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~   83 (645)
T 4aef_A           16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQE---GKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPER   83 (645)
T ss_dssp             EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEEC---SSEEEEEEEECSEEEEEEEEETTEEECCTTCCCE
T ss_pred             EEEEEEecCCCCeEEEEEEcCCCCCCCcccceEc---CCEEEEEEEeCCceEEEEEEECCeEecCCCCCCc
Confidence            577889999999999999999999975 577653   6899999999999999999999999999999854

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.07  E-value=1.6e-10  Score=86.48  Aligned_cols=48  Identities=25%  Similarity=0.366  Sum_probs=44.0

Q ss_pred             ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       261 ~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                      +++++|++++.+|+++|.+++++++||+|+    |   +++||+|.+||++.+..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~----~---~lvGIvT~~Di~~~~~~   49 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG----D---EILGVVTERDILDKVVA   49 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET----T---EEEEEEEHHHHHHHTTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHHHHHHHh
Confidence            689999999999999999999999999983    6   89999999999987654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.05  E-value=3.9e-12  Score=130.66  Aligned_cols=120  Identities=17%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      ++.++|.  .+++++.+++++.+|.++|.+++++.+||+|++  .++++|+||.+|+.....   ..         ..  
T Consensus       109 ~~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~---~~---------~~--  172 (514)
T 1jcn_A          109 NFEQGFI--TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE---KD---------HT--  172 (514)
T ss_dssp             TCCTTSC--SSCCCCCC-----------------CEESCC--------CCEECTTTTC----------------------
T ss_pred             hhhhccc--cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh---cc---------CC--
Confidence            6788894  467899999999999999999999999999953  489999999999854210   00         00  


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                       ..+.+                +|++  +++++.++++|.+|+.+|.+++++++||+|+   +|   +++|+||.+||++
T Consensus       173 -~~v~~----------------vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~---~g---~lvGiIt~~Dll~  229 (514)
T 1jcn_A          173 -TLLSE----------------VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND---CD---ELVAIIARTDLKK  229 (514)
T ss_dssp             -------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS---SS---CCC----CCCCSS
T ss_pred             -CCHHH----------------HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC---CC---eEEEEEEHHHHHH
Confidence             00111                3677  8999999999999999999999999999983   46   8999999999998


Q ss_pred             HHH
Q 016718          312 CIC  314 (384)
Q Consensus       312 ~l~  314 (384)
                      .+.
T Consensus       230 ~~~  232 (514)
T 1jcn_A          230 NRD  232 (514)
T ss_dssp             CCC
T ss_pred             Hhh
Confidence            764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.05  E-value=3e-10  Score=102.72  Aligned_cols=93  Identities=12%  Similarity=-0.012  Sum_probs=78.9

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhc---CCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccc
Q 016718          255 RPCPRPLVQAGPYDSLKEVALKILQN---KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  331 (384)
Q Consensus       255 ~~m~~~~itv~~~~~l~~a~~~m~~~---~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v  331 (384)
                      .+|+++++++++++++.+|+..|.++   +++++||+|+   +|   +++|+||.+|+++.      .       .+   
T Consensus        58 ~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~------~-------~~---  115 (205)
T 3kxr_A           58 RYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE---AD---KYLGTVRRYDIFKH------E-------PH---  115 (205)
T ss_dssp             GGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT---TC---BEEEEEEHHHHTTS------C-------TT---
T ss_pred             hhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC---CC---eEEEEEEHHHHHhC------C-------Cc---
Confidence            46899999999999999999999998   8999999983   46   89999999998742      0       01   


Q ss_pred             ccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          332 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       332 ~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                        .++       +++|.++++++++++++.+|+++|.+++++++||+
T Consensus       116 --~~v-------~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVV  153 (205)
T 3kxr_A          116 --EPL-------ISLLSEDSRALTANTTLLDAAEAIEHSREIELPVI  153 (205)
T ss_dssp             --SBG-------GGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEE
T ss_pred             --chH-------HHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEE
Confidence              123       33456789999999999999999999999999997

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.03  E-value=1.7e-10  Score=99.17  Aligned_cols=100  Identities=9%  Similarity=0.094  Sum_probs=77.9

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccc
Q 016718          257 CPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (384)
Q Consensus       257 m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (384)
                      |.+  +++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||..|+++++..... . ......     ..
T Consensus        20 m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~-~-~~~~~~-----~~   86 (159)
T 1yav_A           20 MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLER-I-EFEKLD-----QI   86 (159)
T ss_dssp             SEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSS-B-CGGGTT-----TS
T ss_pred             hCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---CEEEEeEHHHHHHHhhhhcc-c-chhhhc-----cC
Confidence            556  7899999999999999999999999999983   46   89999999999998753210 0 000011     12


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +++       ++|.++++++.+++++.+|+++|.++++  +||+
T Consensus        87 ~v~-------~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVv  121 (159)
T 1yav_A           87 TVE-------EVMLTDIPRLHINDPIMKGFGMVINNGF--VCVE  121 (159)
T ss_dssp             BHH-------HHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEE
T ss_pred             CHH-------HhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEE
Confidence            233       3445789999999999999999999987  8886

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.02  E-value=3.4e-10  Score=84.71  Aligned_cols=47  Identities=13%  Similarity=0.181  Sum_probs=43.4

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHH
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l  214 (384)
                      |++++++++|+.+|+++|.++++.++||+|  +++++||||.+|+++.+
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d--~~~lvGIvT~~Di~~~~   47 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME--GDEILGVVTERDILDKV   47 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHT
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHH
Confidence            589999999999999999999999999998  47999999999997644

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.96  E-value=2.9e-10  Score=119.52  Aligned_cols=117  Identities=9%  Similarity=-0.018  Sum_probs=83.1

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHH-hcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCC---------
Q 016718          256 PCP--RPLVQAGPYDSLKEVALKIL-QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS---------  323 (384)
Q Consensus       256 ~m~--~~~itv~~~~~l~~a~~~m~-~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~---------  323 (384)
                      +|+  ++++++++++++.|++++|. +++.+++||+|+   +|   +++|+||.+|+++.+..+.......         
T Consensus       458 iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~---~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~  531 (632)
T 3org_A          458 IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA---NG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVL  531 (632)
T ss_dssp             HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT---TC---BBCCEESHHHHTTTTTTC----------------
T ss_pred             HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec---CC---eEEEEEEHHHHHHHHHHHhhhcccccccccceec
Confidence            577  89999999999999999999 899999999983   36   8999999999999876542111000         


Q ss_pred             --cccccccccccccc-----------------ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          324 --LPILQQPVSSIQLG-----------------TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       324 --~~~~~~~v~~l~ig-----------------~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                        ...+.+.+..+.-.                 +....+.++|++++++|++++++.+|+++|.+++++++||+
T Consensus       532 ~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv  605 (632)
T 3org_A          532 LDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT  605 (632)
T ss_dssp             ---------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE
T ss_pred             cCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE
Confidence              00011111111000                 11112567899999999999999999999999999999997

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.92  E-value=8.9e-10  Score=104.62  Aligned_cols=92  Identities=7%  Similarity=0.035  Sum_probs=78.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhc-----CCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  330 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~-----~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~  330 (384)
                      +|+++++++.+++++.+|+..|.++     +++++||+|+   +|   +++|+||.+|++++.             .+. 
T Consensus       142 iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~---~~---~lvGivt~~dll~~~-------------~~~-  201 (286)
T 2oux_A          142 IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVND-------------DDT-  201 (286)
T ss_dssp             HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTSC-------------TTS-
T ss_pred             hCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC---CC---eEEEEEEHHHHHcCC-------------CCC-
Confidence            5888999999999999999999998     8899999984   36   899999999998640             011 


Q ss_pred             cccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       331 v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                          ++++       +|.+++++|++++++.+|+++|.+++++++||+
T Consensus       202 ----~v~~-------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVV  238 (286)
T 2oux_A          202 ----LIAD-------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVT  238 (286)
T ss_dssp             ----BHHH-------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             ----cHHH-------HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEE
Confidence                2333       345789999999999999999999999999997

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.92  E-value=1.6e-09  Score=111.42  Aligned_cols=98  Identities=10%  Similarity=0.050  Sum_probs=79.9

Q ss_pred             CCCCCCceEeCCC-CCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718          255 RPCPRPLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (384)
Q Consensus       255 ~~m~~~~itv~~~-~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (384)
                      ++|+++++++.++ +++.+|+++|.+++++++||+|.  ++|   +++||||.+||++++......       .+.    
T Consensus       388 diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~--~~g---~lvGiVt~~Dll~~l~~~~~~-------~~~----  451 (527)
T 3pc3_A          388 ELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQ--DDG---SVLGVVGQETLITQIVSMNRQ-------QSD----  451 (527)
T ss_dssp             GGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECT--TTC---CEEEEEEHHHHHHHHHHHCCC-------TTS----
T ss_pred             HhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEEC--CCC---EEEEEEEHHHHHHHHHhccCc-------CCC----
Confidence            3689999999999 99999999999999999999982  236   899999999999998764211       122    


Q ss_pred             ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       ++++.       |+++++++.+++++.+|+++|.++++  +||+
T Consensus       452 -~V~~i-------m~~~~~~v~~~~~l~~a~~~m~~~~~--~pVV  486 (527)
T 3pc3_A          452 -PAIKA-------LNKRVIRLNESEILGKLARVLEVDPS--VLIL  486 (527)
T ss_dssp             -BGGGG-------EETTCCEEETTSBHHHHHHHHTTCSE--EEEE
T ss_pred             -cHHHH-------hcCCCeEECCCCcHHHHHHHHhhCCE--EEEE
Confidence             23333       45799999999999999999988776  5765

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.91  E-value=3e-09  Score=100.37  Aligned_cols=93  Identities=12%  Similarity=0.133  Sum_probs=78.9

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhc-----CCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccc
Q 016718          255 RPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  329 (384)
Q Consensus       255 ~~m~~~~itv~~~~~l~~a~~~m~~~-----~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~  329 (384)
                      .+|+++++++.+++++.+|+..|.++     ++.++||+|.   +|   +++|+||.+|++.+      .       .+ 
T Consensus       139 ~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~------~-------~~-  198 (278)
T 2yvy_A          139 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA------D-------PR-  198 (278)
T ss_dssp             GTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT---TC---BEEEEEEHHHHHHS------C-------TT-
T ss_pred             hhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC---CC---CEEEEEEHHHHhcC------C-------CC-
Confidence            36889999999999999999999998     7999999984   36   89999999999863      0       01 


Q ss_pred             ccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       330 ~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                          .++++       +|.+++++|++++++.+|+++|.+++++++||+
T Consensus       199 ----~~v~~-------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  236 (278)
T 2yvy_A          199 ----TRVAE-------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVV  236 (278)
T ss_dssp             ----CBSTT-------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             ----CcHHH-------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEE
Confidence                12333       345789999999999999999999999999997

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.69  E-value=2.4e-08  Score=101.36  Aligned_cols=93  Identities=12%  Similarity=0.133  Sum_probs=78.6

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhc-----CCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccc
Q 016718          255 RPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  329 (384)
Q Consensus       255 ~~m~~~~itv~~~~~l~~a~~~m~~~-----~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~  329 (384)
                      .+|+++++++++++++.+|++.|.++     ++.++||+|+   ++   +++|+||.+|++..      .       .+ 
T Consensus       159 ~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~---~~---~lvGiVt~~Dll~~------~-------~~-  218 (473)
T 2zy9_A          159 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA------D-------PR-  218 (473)
T ss_dssp             TTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT---TS---BEEEEEEHHHHHHS------C-------TT-
T ss_pred             HhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC---CC---cEEEEEEHHHHhcC------C-------CC-
Confidence            47899999999999999999999997     5899999984   35   89999999999863      1       01 


Q ss_pred             ccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       330 ~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                          .++.+       +|.++++++++++++.+|+++|.++++.++||+
T Consensus       219 ----~~v~d-------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVV  256 (473)
T 2zy9_A          219 ----TRVAE-------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVV  256 (473)
T ss_dssp             ----SBGGG-------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEE
T ss_pred             ----CcHHH-------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEE
Confidence                12333       345789999999999999999999999999997

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.66  E-value=7.2e-08  Score=98.21  Aligned_cols=96  Identities=10%  Similarity=0.080  Sum_probs=78.8

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|..+++++.+++++.+++++|.++++.++||+|. .+++   +++|+||.+|+++.     ..       .+     .+
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~-----~~-------~~-----~~  153 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFI-----SD-------YN-----AP  153 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHC-----SC-------SS-----SB
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhh-----cc-------CC-----Cc
Confidence            57889999999999999999999999999999971 0135   89999999999853     01       11     22


Q ss_pred             ccccccccccCCCC-CceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          336 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       336 ig~~~~~v~~~~~~-~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                      +.       ++|.+ +++++++++++.+++++|.+++++.+||+-
T Consensus       154 v~-------~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd  191 (491)
T 1zfj_A          154 IS-------EHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD  191 (491)
T ss_dssp             TT-------TSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             HH-------HHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            33       33456 889999999999999999999999999973

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.61  E-value=5.5e-08  Score=99.60  Aligned_cols=95  Identities=7%  Similarity=0.047  Sum_probs=77.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      .|..+++++++++++.+|+.+|.++++.++||+|+. .++   +|+||||.+|+..      ..      ..+.++    
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~------~~------~~~~~V----  177 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF------IQ------DYSIKI----  177 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT------CC------CSSSBH----
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh------hc------cCCCcH----
Confidence            367888999999999999999999999999999820 135   8999999999954      01      112222    


Q ss_pred             ccccccccccCCCC-CceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~-~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       .+.       |.+ +++++++++++.+|+++|.++++..+||+
T Consensus       178 -~~v-------M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVV  213 (511)
T 3usb_A          178 -SDV-------MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLV  213 (511)
T ss_dssp             -HHH-------CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEE
T ss_pred             -HHh-------cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence             233       345 89999999999999999999999999997

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.57  E-value=6.5e-09  Score=106.35  Aligned_cols=96  Identities=13%  Similarity=0.064  Sum_probs=0.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      |.++++++++++++.+|+.+|.+++++++||+|++...+   +++||||.+|+++.  .   .      ..+.+     +
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g---~lvGiVt~~Dl~~~--~---~------~~~~~-----V  163 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG---VLLGLVTQRDYPID--L---T------QTETK-----V  163 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC---eEEEEEEHHHHHhh--h---c------cccCc-----H
Confidence            778999999999999999999999999999998300015   89999999999864  1   0      01222     2


Q ss_pred             cccccccccCCCCC--ceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          337 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       337 g~~~~~v~~~~~~~--v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .+       +|.++  ++++++++++.+|+++|.+++++.+||+
T Consensus       164 ~d-------iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVV  200 (503)
T 1me8_A          164 SD-------MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPII  200 (503)
T ss_dssp             --------------------------------------------
T ss_pred             HH-------HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEE
Confidence            33       33455  8999999999999999999999999997

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.51  E-value=4.1e-08  Score=100.18  Aligned_cols=93  Identities=11%  Similarity=0.097  Sum_probs=68.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      .|..+++++++++++.+|+.+|.++++.++||+|+   ++   +++||||.+|+..      ..      ..+.+     
T Consensus        94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~---~lvGiVt~rDL~~------~~------~~~~~-----  150 (496)
T 4fxs_A           94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NN---ELVGIITGRDVRF------VT------DLTKS-----  150 (496)
T ss_dssp             --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SS---BEEEEEEHHHHTT------CC------CTTSB-----
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CC---EEEEEEEHHHHhh------cc------cCCCc-----
Confidence            47889999999999999999999999999999984   36   8999999999951      11      11222     


Q ss_pred             ccccccccccCCC-C-CceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~-~-~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +.+.|       . + +++++++++++.+|+++|.++++..+||+
T Consensus       151 v~diM-------~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVV  188 (496)
T 4fxs_A          151 VAAVM-------TPKERLATVKEGATGAEVQEKMHKARVEKILVV  188 (496)
T ss_dssp             GGGTS-------EEGGGCCEEECC----CGGGTCC---CCCEEEE
T ss_pred             HHHHh-------cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence            33333       3 2 58999999999999999999999999997

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.49  E-value=1.4e-08  Score=103.49  Aligned_cols=93  Identities=16%  Similarity=0.203  Sum_probs=0.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|.++++++.+++++.+|+.+|.++++.++||+|+   ++   +++||||.+|+++.  .   .       .+.     +
T Consensus       100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~lvGivt~~Dl~~~--~---~-------~~~-----~  156 (494)
T 1vrd_A          100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EG---RLVGLLTNRDVRFE--K---N-------LSK-----K  156 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CC---EEEEEEEHHHHHhh--c---C-------CCC-----c
Confidence            47889999999999999999999999999999983   36   89999999999862  0   0       112     2


Q ss_pred             ccccccccccCCCC--CceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~--~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +.       ++|.+  +++++++++++.+|+++|.+++++.+||+
T Consensus       157 v~-------~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVV  194 (494)
T 1vrd_A          157 IK-------DLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLV  194 (494)
T ss_dssp             ---------------------------------------------
T ss_pred             HH-------HHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence            22       33455  89999999999999999999999999997

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.48  E-value=2.7e-07  Score=77.40  Aligned_cols=61  Identities=21%  Similarity=0.399  Sum_probs=48.9

Q ss_pred             CCCceeEEEEEeeC---CCceEEEEec---CCCCCCC--CCCCCCC--CCCCeEEEEEecCCce-EEEEEEE
Q 016718           16 VGSILVPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSE--GCPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        16 ~~~~~~~v~f~w~~---~~~~V~v~Gs---F~~W~~~--~~m~~~~--~~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      .....+.++|+...   .++.|+|+|+   +.+|++.  ++|.+.+  .....|++++.||+|. +||||++
T Consensus         4 ~s~~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            4 GSSGPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             --CCCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             CCCCeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            34456889999876   4789999999   8999974  5888752  1378999999999985 9999999

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.47  E-value=1.7e-08  Score=102.03  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=0.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      |-.++++++|++++.||..+|.++++..+||+|+...+|   +|+||||.+|+- +     ..       .+.+|     
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~r-f-----~d-------~~~~V-----  202 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQ-F-----QD-------AETPI-----  202 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEeccccc-c-----cc-------cceEh-----
Confidence            456778999999999999999999999999998422235   899999999963 2     11       11222     


Q ss_pred             cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             .++|.++++|+.+++++.+|.++|.++++..||||
T Consensus       203 -------~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVV  237 (556)
T 4af0_A          203 -------KSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIV  237 (556)
T ss_dssp             ------------------------------------------
T ss_pred             -------hhhcccceEEecCCCCHHHHHHHHHHccccceeEE
Confidence                   23445789999999999999999999999999997

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.41  E-value=3.1e-08  Score=100.97  Aligned_cols=92  Identities=13%  Similarity=0.114  Sum_probs=0.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      .|..+++++++++++.+|+.+|.++++.++||+|    ++   +|+||||.+|+....     .       .+     .+
T Consensus        93 ~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~~-----~-------~~-----~~  148 (490)
T 4avf_A           93 AIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVKP-----N-------AG-----DT  148 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhcc-----c-------cC-----Cc
Confidence            4778899999999999999999999999999997    25   899999999985211     0       11     22


Q ss_pred             ccccccccccCCC-C-CceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~-~-~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +.++       |. + +++++++++++.+|+++|.++++..+||+
T Consensus       149 V~~v-------Mtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVV  186 (490)
T 4avf_A          149 VAAI-------MTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVV  186 (490)
T ss_dssp             ---------------------------------------------
T ss_pred             HHHH-------hccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence            3333       34 3 68999999999999999999999999997

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.33  E-value=2.9e-08  Score=101.83  Aligned_cols=98  Identities=12%  Similarity=0.069  Sum_probs=53.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|.++++++.+++++.+|+++|.+++++++||+|+...++   +++|+||.+|+.+...    .      ..+.     +
T Consensus       113 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~~~----~------~~~~-----~  174 (514)
T 1jcn_A          113 GFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFLAE----K------DHTT-----L  174 (514)
T ss_dssp             TSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC-------------------------
T ss_pred             ccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhhhh----c------cCCC-----C
Confidence            4778889999999999999999999999999998310035   8999999999976310    0      0111     2


Q ss_pred             ccccccccccCCCC--CceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~--~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +.       ++|.+  +++++.+++++.+|+++|.+++++.+||+
T Consensus       175 v~-------~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVV  212 (514)
T 1jcn_A          175 LS-------EVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIV  212 (514)
T ss_dssp             -------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEE
T ss_pred             HH-------HHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEE
Confidence            22       33456  89999999999999999999999999998

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.18  E-value=2.2e-07  Score=94.63  Aligned_cols=91  Identities=8%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      .|..+++++.+++++.+++++|.++++.++||+|+    +   +++|+||.+|++.   .   .        +     .+
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~----~---~lvGivt~~Dl~~---~---~--------~-----~~  151 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED----E---KVVGIITKKDIAA---R---E--------G-----KL  151 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHhcc---C---C--------C-----CC
Confidence            47789999999999999999999999999999972    5   8999999999975   1   0        1     12


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA  379 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~  379 (384)
                      +.+.       |.++++++.+++++.+++++|.+++++.+||+-
T Consensus       152 v~~i-------m~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd  188 (486)
T 2cu0_A          152 VKEL-------MTKEVITVPESIEVEEALKIMIENRIDRLPVVD  188 (486)
T ss_dssp             --------------------------------------------
T ss_pred             HHHH-------ccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe
Confidence            2333       456889999999999999999999999999973

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=97.97  E-value=2.1e-05  Score=77.92  Aligned_cols=87  Identities=22%  Similarity=0.296  Sum_probs=65.8

Q ss_pred             eeEEEEEeeCC-C-------ceEEEE--ecCC---CCCCCCCCCCCCCCCCeEEEEEecCCceE-EEEEEEc--------
Q 016718           20 LVPVRFIWPNG-G-------RRVSLS--GSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGHH-QYKFYVD--------   77 (384)
Q Consensus        20 ~~~v~f~w~~~-~-------~~V~v~--GsF~---~W~~~~~m~~~~~~~~~~~~~~~L~~G~y-~YkFiVD--------   77 (384)
                      ...|||.|+++ |       ++|+|.  |..+   +|. ..+|+|.. ..|+|+.++.||++-| .|.|+||        
T Consensus        30 ~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~-~~~m~r~~-~~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~~  107 (403)
T 3c8d_A           30 MFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQ-PQSMQRIA-GTDVWQWTTQLNANWRGSYCFIPTERDDIFSA  107 (403)
T ss_dssp             EEEEEEEEECTTCSTTTCCCCEEEEEETTTC--------CCBCEECT-TSSEEEEEEEEETTCEEEEEEEEESCCSTTCC
T ss_pred             cEEEEEEeeCCCcccccCccceEEEECcCCCccccccC-ccccccCC-CCCeEEEEEEECCCcEEEEEEEecCccccccc
Confidence            57899999974 4       689998  3222   122 24798843 2899999999999999 9999999        


Q ss_pred             ----------------CEeecCCCCCeeeC-CCCCeeeEEEeccCCCCC
Q 016718           78 ----------------GEWRHDENQPHVSG-NYGVVNCVYIAVPQPDMV  109 (384)
Q Consensus        78 ----------------G~w~~d~~~p~~~d-~~G~~nNvi~v~~~~~~~  109 (384)
                                      |..+.||.||.... ..|...|++++ ..+...
T Consensus       108 ~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~-p~~~~~  155 (403)
T 3c8d_A          108 PSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM-PQAPLQ  155 (403)
T ss_dssp             C--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC-TTCCCC
T ss_pred             ccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccC-CCCCcC
Confidence                            77889999998764 34888999999 654433

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=97.92  E-value=6.9e-06  Score=66.32  Aligned_cols=60  Identities=25%  Similarity=0.456  Sum_probs=47.2

Q ss_pred             CceeEEEEEeeC---CCceEEEEecC---CCCCCC--CCCCCCCC--CCCeEEEEEecCCce-EEEEEEEc
Q 016718           18 SILVPVRFIWPN---GGRRVSLSGSF---TRWSEP--MPMSPSEG--CPAVFQIICRLPPGH-HQYKFYVD   77 (384)
Q Consensus        18 ~~~~~v~f~w~~---~~~~V~v~GsF---~~W~~~--~~m~~~~~--~~~~~~~~~~L~~G~-y~YkFiVD   77 (384)
                      +..+.++|....   .|++|+|+|+.   .+|++.  ++|.....  .++.|++++.||+|. ++|||++.
T Consensus         4 ~~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v~   74 (108)
T 1ac0_A            4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRI   74 (108)
T ss_dssp             CCCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEEC
T ss_pred             CCeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEEE
Confidence            345778888875   47899999985   589964  68987521  357999999999995 99999993

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.27  E-value=0.00072  Score=70.60  Aligned_cols=68  Identities=25%  Similarity=0.541  Sum_probs=52.1

Q ss_pred             eEEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCEe--ecCCCCCeee
Q 016718           21 VPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS   90 (384)
Q Consensus        21 ~~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiV---DG~w--~~d~~~p~~~   90 (384)
                      ..++|+ |...+++|.|+|+|++|... ++|++.. .+|+|+++++ +++|. .|+|.|   ||.+  ..||......
T Consensus        25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~-~~GvW~~~v~~~~~g~-~Y~f~i~~~~g~~~~~~DPya~~~~  100 (617)
T 1m7x_A           25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRK-ESGIWELFIPGAHNGQ-LYKYEMIDANGNLRLKSDPYAFEAQ  100 (617)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCT-TTTEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSEE
T ss_pred             CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEECC-CCCEEEEEEcCCCCCC-EEEEEEEcCCCcEEEecCccceeec
Confidence            357786 67789999999999999754 7898732 3799999987 67787 499998   6764  5777665544

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.27  E-value=0.00035  Score=74.55  Aligned_cols=64  Identities=20%  Similarity=0.459  Sum_probs=49.4

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-------cCCceEEEEEEEc---CEe--ecCCCCC
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-------LPPGHHQYKFYVD---GEW--RHDENQP   87 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-------L~~G~y~YkFiVD---G~w--~~d~~~p   87 (384)
                      -++|. |...|++|.|+|+||+|... ++|.+..  .|+|++.++       +++|.+ |||.|+   |.|  +.||...
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~--~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~  142 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDK--FGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR  142 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEECT--TSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeeceeCC--CCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence            46775 78889999999999999864 7998753  799999998       788874 888885   455  3566554


Q ss_pred             e
Q 016718           88 H   88 (384)
Q Consensus        88 ~   88 (384)
                      .
T Consensus       143 ~  143 (755)
T 3aml_A          143 Y  143 (755)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.19  E-value=0.00053  Score=72.76  Aligned_cols=67  Identities=31%  Similarity=0.506  Sum_probs=50.8

Q ss_pred             eEEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCEe--ecCCCCCee
Q 016718           21 VPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHV   89 (384)
Q Consensus        21 ~~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiV---DG~w--~~d~~~p~~   89 (384)
                      .-++|. |...|++|.|+|+||+|+.. .+|.+.. ..|+|++.++ +.+|. .|||.|   ||++  +.||.....
T Consensus       136 ~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~  210 (722)
T 3k1d_A          136 SGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLG-PSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGT  210 (722)
T ss_dssp             EEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECG-GGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSB
T ss_pred             ceEEEEEECCCCCEEEEEeecCCCCCCcccCEEcC-CCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceee
Confidence            346676 77789999999999999864 6898743 2699999987 78885 578887   5654  677766554

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=96.25  E-value=0.012  Score=46.78  Aligned_cols=65  Identities=15%  Similarity=0.312  Sum_probs=48.5

Q ss_pred             eEEEEEeeCCCceEEEEecCC--CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcC--EeecCCCCC
Q 016718           21 VPVRFIWPNGGRRVSLSGSFT--RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG--EWRHDENQP   87 (384)
Q Consensus        21 ~~v~f~w~~~~~~V~v~GsF~--~W~~~--~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiVDG--~w~~d~~~p   87 (384)
                      ..+++.|..+.++|+|-..+.  +|+..  .+|.+.. .++.+..++.||.| .++|+|. ||  .|-.+...-
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~~-~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~N   76 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDAE-ISGYAKITVDIGSASQLEAAFN-DGNNNWDSNNTKN   76 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEET-TTTEEEEEEECTTCSCEEEEEE-CSSSCEESTTTSC
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCcccccccc-CCCeEEEEEECCCCCEEEEEEe-CCCCcCcCCCCcc
Confidence            467788888889999999985  79975  4787643 24544699999976 6999995 76  487765543

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=96.00  E-value=0.018  Score=60.62  Aligned_cols=57  Identities=23%  Similarity=0.512  Sum_probs=46.2

Q ss_pred             CceeEEEEEeeC-----CCceEEEEecCC---CCCC--------CC-CCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 016718           18 SILVPVRFIWPN-----GGRRVSLSGSFT---RWSE--------PM-PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        18 ~~~~~v~f~w~~-----~~~~V~v~GsF~---~W~~--------~~-~m~~~~~~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      ...+.++|+...     .|++|+|+|+-.   +|++        .+ +|....  ...|++++.||+|. +||||++
T Consensus       579 ~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~--~~~W~~~v~l~~~~~~eyKy~~  653 (686)
T 1qho_A          579 GTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPN--YPDWFYVFSVPAGKTIQFKFFI  653 (686)
T ss_dssp             SSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTT--TTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCC--CCcEEEEEEeCCCCeEEEEEEE
Confidence            356788888865     378999999975   7998        34 777643  67999999999985 9999998

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=95.80  E-value=0.0083  Score=62.06  Aligned_cols=69  Identities=14%  Similarity=0.106  Sum_probs=49.8

Q ss_pred             CCCCCCC----CCCceeEEEEE-eeCCCceEEE-EecCCCCCC----CCCCCCCC--CCCCeEEEEEecCCceEEEEEEE
Q 016718            9 GHENSGV----VGSILVPVRFI-WPNGGRRVSL-SGSFTRWSE----PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYV   76 (384)
Q Consensus         9 ~~~~~~~----~~~~~~~v~f~-w~~~~~~V~v-~GsF~~W~~----~~~m~~~~--~~~~~~~~~~~L~~G~y~YkFiV   76 (384)
                      .|++...    .....+.++|+ |.+.+++|.| .|+|++|+.    .++|++..  +..++|+++++.....+.|||.|
T Consensus         7 ~h~~~~~~~~~~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i   86 (585)
T 1wzl_A            7 FHEAKGSYAYPISETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLL   86 (585)
T ss_dssp             BCCSSTTTEEEEETTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEE
T ss_pred             EecCCCCceeecCCCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEE
Confidence            4665544    22345666664 6668899999 899999975    36898743  12357999999887789999998


Q ss_pred             c
Q 016718           77 D   77 (384)
Q Consensus        77 D   77 (384)
                      .
T Consensus        87 ~   87 (585)
T 1wzl_A           87 T   87 (585)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=95.65  E-value=0.0074  Score=62.12  Aligned_cols=62  Identities=21%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCE-eecCCCCCee
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-WRHDENQPHV   89 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~-w~~d~~~p~~   89 (384)
                      -++|+ |...|++|.|++.|+   ..++|.+.+  +|+|++.++ +.+|. .|+|.|||. ...||.....
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~~--~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~~   74 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERDE--KGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRYQ   74 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEECT--TCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSCC
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccCC--CCEEEEEECCCCCCC-EEEEEEeCCccccCcchhhc
Confidence            45666 677899999999997   458998864  799999997 78885 699999986 7788876543

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=95.57  E-value=0.029  Score=59.08  Aligned_cols=59  Identities=25%  Similarity=0.439  Sum_probs=46.7

Q ss_pred             CceeEEEEEeeC----CCceEEEEecCC---CCCCC--C-CCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 016718           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        18 ~~~~~v~f~w~~----~~~~V~v~GsF~---~W~~~--~-~m~~~~-~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      ...++|+|+...    .++.|+|+|+-.   +|++.  + +|.... .....|++++.||+| .+||||++
T Consensus       577 ~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~v~  647 (680)
T 1cyg_A          577 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK  647 (680)
T ss_dssp             SCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            356889999865    478999999865   89974  5 677610 136799999999998 59999998

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=95.49  E-value=0.0094  Score=61.68  Aligned_cols=69  Identities=20%  Similarity=0.223  Sum_probs=50.6

Q ss_pred             CCCCCCC----CCCceeEEEEE-eeCCCceEEE-EecCCCCCC------CCCCCCCC--CCCCeEEEEEecCCceEEEEE
Q 016718            9 GHENSGV----VGSILVPVRFI-WPNGGRRVSL-SGSFTRWSE------PMPMSPSE--GCPAVFQIICRLPPGHHQYKF   74 (384)
Q Consensus         9 ~~~~~~~----~~~~~~~v~f~-w~~~~~~V~v-~GsF~~W~~------~~~m~~~~--~~~~~~~~~~~L~~G~y~YkF   74 (384)
                      .|++.+.    .....++++|+ |.+.+++|.| .|+|++|+.      .++|++..  +..++|+++++.....+.|+|
T Consensus         7 ~h~~~~~~~~~~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f   86 (588)
T 1j0h_A            7 YHRPADNFAYAYDSETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGF   86 (588)
T ss_dssp             BCCSSTTTEEESSSSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEE
T ss_pred             EecCCCCceEecCCCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEE
Confidence            4666554    33456777775 6668899999 799999965      46898743  123579999998777889999


Q ss_pred             EEc
Q 016718           75 YVD   77 (384)
Q Consensus        75 iVD   77 (384)
                      .|.
T Consensus        87 ~i~   89 (588)
T 1j0h_A           87 VLY   89 (588)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            884

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=95.34  E-value=0.029  Score=59.13  Aligned_cols=59  Identities=27%  Similarity=0.423  Sum_probs=46.8

Q ss_pred             CceeEEEEEeeC----CCceEEEEecCC---CCCCC--C-CCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 016718           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        18 ~~~~~v~f~w~~----~~~~V~v~GsF~---~W~~~--~-~m~~~~-~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      ...+.|+|+...    .++.|+|+||-.   +|++.  + +|.... .....|++++.||+| .+||||++
T Consensus       581 ~~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  651 (683)
T 3bmv_A          581 GNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK  651 (683)
T ss_dssp             SSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            356889999865    479999999876   89963  5 787610 136799999999998 59999998

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=95.17  E-value=0.035  Score=57.59  Aligned_cols=58  Identities=21%  Similarity=0.308  Sum_probs=46.0

Q ss_pred             ceeEEEEEeeC---CCceEEEEecCC---CCCCC--CCCCCCCC--CCCeEEEEEecCCce-EEEEEEE
Q 016718           19 ILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSEG--CPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        19 ~~~~v~f~w~~---~~~~V~v~GsF~---~W~~~--~~m~~~~~--~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      ..+.++|+...   .|++|+|+|+-.   +|++.  ++|...+-  ++..|+.++.||+|. +||||+|
T Consensus       495 ~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv  563 (599)
T 2vn4_A          495 TSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN  563 (599)
T ss_dssp             SEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence            35778888875   489999999864   89974  57876531  137999999999985 9999998

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=95.13  E-value=0.013  Score=62.45  Aligned_cols=54  Identities=17%  Similarity=0.308  Sum_probs=43.4

Q ss_pred             EEEE-eeCCCceEEEEecCCCCCC-----CCCCCCCCCCCCeEEEEEe-cC------CceEEEEEEEcCE
Q 016718           23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LP------PGHHQYKFYVDGE   79 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~GsF~~W~~-----~~~m~~~~~~~~~~~~~~~-L~------~G~y~YkFiVDG~   79 (384)
                      +.|. |...|++|.|++ |++|..     .++|.+..  +|+|++.++ +.      +|.|.|+|.|+|.
T Consensus        18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~   84 (750)
T 1bf2_A           18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAG--SGVWAVTVPVSSIKAAGITGAVYYGYRAWGP   84 (750)
T ss_dssp             EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECS--TTEEEEEEEHHHHHHTTCCSCCEEEEEEEBT
T ss_pred             EEEEEECCCCCEEEEEE-EccCCCCccceEEecccCC--CCEEEEEECCcccccccCCCCEEEEEEEEee
Confidence            6776 777899999998 887653     36787643  699999986 66      8999999999975

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.12  E-value=0.038  Score=58.23  Aligned_cols=59  Identities=29%  Similarity=0.443  Sum_probs=46.5

Q ss_pred             CceeEEEEEeeC----CCceEEEEecCC---CCCCC--C-CCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 016718           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        18 ~~~~~v~f~w~~----~~~~V~v~GsF~---~W~~~--~-~m~~~~-~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      ...+.|+|+...    .|+.|+|+||-.   +|++.  + +|.... .....|++++.||+| .+||||++
T Consensus       584 ~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  654 (686)
T 1d3c_A          584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLK  654 (686)
T ss_dssp             SSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence            357889999865    479999999865   89974  5 677510 136799999999998 59999998

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=95.09  E-value=0.019  Score=59.68  Aligned_cols=62  Identities=21%  Similarity=0.362  Sum_probs=49.0

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCeee
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVS   90 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~~   90 (384)
                      .++|+ |...+++|.|+|+   + ..++|.+..  .|+|++.+++.+|.+ |+|.|||....||......
T Consensus        35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~~--~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~   97 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   97 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET---T-EEEECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEEEEEEc---C-CEEeCeeCC--CcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence            57775 7778999999994   2 357898864  799999999888886 9999999667887765543

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=95.04  E-value=0.022  Score=59.75  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=42.6

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCE
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~--~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~   79 (384)
                      -+.|+ |...|++|.|++ |+++.  ..++|.+..  +|+|++.++ +.+|.+ |+|.|+|.
T Consensus        20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGHS--GDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEEE--TTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCCC--CCEEEEEECCCCCCCE-EEEEEeee
Confidence            47776 777899999999 98765  247898643  799999885 778876 99999883

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=94.91  E-value=0.063  Score=56.89  Aligned_cols=55  Identities=18%  Similarity=0.415  Sum_probs=42.6

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCC-----CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCEe
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~w   80 (384)
                      .+.|. |...|++|.|++ |+++..     .++|.+..  .|+|++.++ +.+|.+ |+|.|+|.|
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKT--GDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEES--SSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCC--CCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            46776 777899999999 876432     36888643  799999886 788987 999999853

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=94.56  E-value=0.05  Score=55.42  Aligned_cols=59  Identities=17%  Similarity=0.268  Sum_probs=45.7

Q ss_pred             CCceeEEEEEeeC----CCceEEEEecCC---CCCCCC---CCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 016718           17 GSILVPVRFIWPN----GGRRVSLSGSFT---RWSEPM---PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        17 ~~~~~~v~f~w~~----~~~~V~v~GsF~---~W~~~~---~m~~~~~~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      ....+.++|+...    .|++|+|+|+-.   +|++..   +|.... .++.|++++.||+|. ++|||++
T Consensus       416 t~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~-~p~~W~~~v~lp~~~~~eYKyv~  485 (516)
T 1vem_A          416 GVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDS-HSNDWRGNVVLPAERNIEFKAFI  485 (516)
T ss_dssp             SCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEET-TTTEEEEEEEEETTCCEEEEEEE
T ss_pred             ccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCC-CCCEEEEEEEECCCCcEEEEEEE
Confidence            3456889999764    489999999865   799763   565422 245999999999985 9999998

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=93.89  E-value=0.019  Score=59.27  Aligned_cols=69  Identities=16%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             CCCCCCC----CCCceeEEEEE-eeCCCceEEE-EecCCCCCC---CCCCCCCC--CCCCeEEEEEecCCceEEEEEEEc
Q 016718            9 GHENSGV----VGSILVPVRFI-WPNGGRRVSL-SGSFTRWSE---PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (384)
Q Consensus         9 ~~~~~~~----~~~~~~~v~f~-w~~~~~~V~v-~GsF~~W~~---~~~m~~~~--~~~~~~~~~~~L~~G~y~YkFiVD   77 (384)
                      .|++...    .....+.++|+ |.+.+++|.| .|+|++|..   ..+|++..  +..|+|++.++.....+.|||.|.
T Consensus         7 ~h~~~~~~~~~~~~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C            7 YHRPRKNFSYAYNGTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             BCCSSTTSSEESSSSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCCE
T ss_pred             EecCCCCceEecCCCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEEE
Confidence            5666554    23345566664 6667899999 799999976   36898743  124569999988777788888873

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=93.74  E-value=0.068  Score=56.61  Aligned_cols=64  Identities=20%  Similarity=0.328  Sum_probs=47.0

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc--CEe--ecCCCCCe
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD--GEW--RHDENQPH   88 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVD--G~w--~~d~~~p~   88 (384)
                      .++|+ |...+++|.|++.|++|... ++|.+..  .|+|++.++ +.+|. .|+|.|+  |.|  ..||....
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DPya~~  184 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLE--KGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQYAKA  184 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEECG--GGEEEEEEESCCTTC-EEEEEEEETTEEEEECCTTCSS
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccCC--CCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCCcccc
Confidence            46776 77789999999999988653 6998754  689999987 45664 5666664  764  56776554

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=92.99  E-value=0.096  Score=57.90  Aligned_cols=67  Identities=18%  Similarity=0.217  Sum_probs=48.5

Q ss_pred             EEEEE-eeCCCceEEEEe-cCCCCCC-CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc------CE----eecCCCCC
Q 016718           22 PVRFI-WPNGGRRVSLSG-SFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQP   87 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~G-sF~~W~~-~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVD------G~----w~~d~~~p   87 (384)
                      -+.|. |...|++|.|++ +|++|.. .++|.+.. ..|+|++.+. +.+|.+ |+|.|+      |.    ...||...
T Consensus       305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~-~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~  382 (1083)
T 2fhf_A          305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDS-ASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAH  382 (1083)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEECT-TTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCccceEECeECC-CCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCccc
Confidence            36676 777899999999 8999975 46898543 3689999875 677865 777774      42    36777665


Q ss_pred             eee
Q 016718           88 HVS   90 (384)
Q Consensus        88 ~~~   90 (384)
                      ...
T Consensus       383 ~~~  385 (1083)
T 2fhf_A          383 SLS  385 (1083)
T ss_dssp             CBC
T ss_pred             eec
Confidence            433

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=92.21  E-value=0.16  Score=52.92  Aligned_cols=61  Identities=25%  Similarity=0.405  Sum_probs=46.1

Q ss_pred             EEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc-CEeecCCCCCeee
Q 016718           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD-GEWRHDENQPHVS   90 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVD-G~w~~d~~~p~~~   90 (384)
                      +.|+ |...|++|.|++   +|. ..+|.+.+  +|+|.+.++ +.+|. .|+|.|+ |....||......
T Consensus        44 ~~F~vwap~a~~v~l~~---~~~-~~~m~~~~--~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~  107 (618)
T 3m07_A           44 VRFRLWATGQQKVMLRL---AGK-DQEMQANG--DGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQK  107 (618)
T ss_dssp             EEEEEECTTCSCEEEEE---TTE-EEECEECS--TTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBS
T ss_pred             EEEEEECCCCCEEEEEE---CCC-cccCeecC--CEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeee
Confidence            6777 677899999998   343 37898864  689999874 77786 5889995 5678888766544

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=91.59  E-value=0.099  Score=56.58  Aligned_cols=65  Identities=15%  Similarity=0.183  Sum_probs=48.3

Q ss_pred             EEEE-eeCCCceEEEEe-cCCCCCC---CCCCCCCCCCCCeEEEEEecCCce-----EEEEEEEc--CE--eecCCCCCe
Q 016718           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLPPGH-----HQYKFYVD--GE--WRHDENQPH   88 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~G-sF~~W~~---~~~m~~~~~~~~~~~~~~~L~~G~-----y~YkFiVD--G~--w~~d~~~p~   88 (384)
                      +.|+ |...|++|.|++ ++++|..   .++|.+.  .+|+|++.+.+.+|.     +.|+|.|+  |.  ...||....
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~  223 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKN--NKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKS  223 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEEC--TTSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccC--CCCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCcccee
Confidence            6777 677899999998 7888853   4789874  379999999776662     67888885  33  467777654


Q ss_pred             e
Q 016718           89 V   89 (384)
Q Consensus        89 ~   89 (384)
                      .
T Consensus       224 ~  224 (877)
T 3faw_A          224 L  224 (877)
T ss_dssp             B
T ss_pred             c
Confidence            3

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=91.42  E-value=0.23  Score=52.47  Aligned_cols=65  Identities=14%  Similarity=0.264  Sum_probs=47.2

Q ss_pred             EEEE-eeCCCceEEEEe-cCCCCCC---CCCCCCCCCCCCeEEEEEecC--Cc-----eEEEEEEEc--CE--eecCCCC
Q 016718           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLP--PG-----HHQYKFYVD--GE--WRHDENQ   86 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~G-sF~~W~~---~~~m~~~~~~~~~~~~~~~L~--~G-----~y~YkFiVD--G~--w~~d~~~   86 (384)
                      +.|+ |...|++|.|++ +|++|..   .++|.+..  .|+|++.++-.  +|     -+.|+|.|+  |.  ...||..
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya  103 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGE--RGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  103 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECG--GGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCC--CCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCce
Confidence            6776 777899999999 8988864   47898743  79999988641  34     267888885  54  4577766


Q ss_pred             Cee
Q 016718           87 PHV   89 (384)
Q Consensus        87 p~~   89 (384)
                      ..+
T Consensus       104 ~~~  106 (714)
T 2ya0_A          104 KSL  106 (714)
T ss_dssp             SEE
T ss_pred             eee
Confidence            543

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=91.22  E-value=0.039  Score=56.25  Aligned_cols=57  Identities=23%  Similarity=0.420  Sum_probs=0.0

Q ss_pred             ceeEEEEEe-eC---CCceEEEEecCC---CCCCC--CCCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 016718           19 ILVPVRFIW-PN---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        19 ~~~~v~f~w-~~---~~~~V~v~GsF~---~W~~~--~~m~~~~~~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      ..++|+|+. ..   .|++|+|+|+-.   +|++.  ++|.... ....|++++.||+|. +||||+|
T Consensus       429 ~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~-~~~~W~~~v~lp~~~~~eyKy~~  495 (527)
T 1gcy_A          429 ALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTS-GYPTWKGSIALPAGQNEEWKCLI  495 (527)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             CEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCC-CCCeEEEEEEeCCCCcEEEEEEE
Confidence            457888886 32   489999999876   79974  6887321 267899999999995 9999997

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=90.88  E-value=0.16  Score=54.64  Aligned_cols=54  Identities=15%  Similarity=0.091  Sum_probs=38.4

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCCC--CCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEPM--PMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG   78 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~~--~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG   78 (384)
                      -++|+ |...|++|.|++-+++|....  .|.+.  .+|+|++.++ +.+|. .|+|.|++
T Consensus       137 g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~--~~g~W~~~~~~~~~g~-~Y~y~v~~  194 (884)
T 4aio_A          137 SVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKE--SNGVWSVTGPREWENR-YYLYEVDV  194 (884)
T ss_dssp             EEEEEEECTTCSEEEEEEESTTTSCEEEEEECEE--ETTEEEEEEEGGGTTC-EEEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEEeCCCCCeeeeeeecC--CCCEEEEEECCCCCCC-EEEEEEeC
Confidence            36787 788899999999666666542  23332  3799999987 56675 48888865

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=89.95  E-value=0.22  Score=54.17  Aligned_cols=63  Identities=16%  Similarity=0.244  Sum_probs=44.8

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCC----CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEE--cCE--eecCCCCCe
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWS----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYV--DGE--WRHDENQPH   88 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~----~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiV--DG~--w~~d~~~p~   88 (384)
                      .++|+ |...+++|.|++ |++|.    ..++|.+..  .|+|++.++ +.+|. .|+|.|  +|.  ...||....
T Consensus       326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~~  398 (921)
T 2wan_A          326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSD--NGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYARA  398 (921)
T ss_dssp             EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECG--GGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCSS
T ss_pred             eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCC--CCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCccee
Confidence            46665 666799999997 99994    247898754  689999987 45665 366666  564  456776543

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=89.13  E-value=0.55  Score=51.10  Aligned_cols=59  Identities=27%  Similarity=0.513  Sum_probs=41.6

Q ss_pred             eEEEEEeeCCCceEEEEecC-------CCCCCCCC---CCCCCCCCCeEEEEEecCCceEEEEEEEcCEee
Q 016718           21 VPVRFIWPNGGRRVSLSGSF-------TRWSEPMP---MSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR   81 (384)
Q Consensus        21 ~~v~f~w~~~~~~V~v~GsF-------~~W~~~~~---m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~   81 (384)
                      +++..--...+..+.+.|+|       .+|++...   |.+.  .+|.|+.+-.||+|.|+||+.++|.|.
T Consensus       153 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~--~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          153 IPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKI--NPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             ECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEE--ETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             ccccccccccccccccccchhhhccccccCCCCCCcceeecc--CCcceeeeeccCCcceeEEEeecCccc
Confidence            34433333345568888877       46887642   3332  278999999999999999999997663

>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}

Probab=88.12  E-value=0.34  Score=43.40  Aligned_cols=50  Identities=16%  Similarity=0.171  Sum_probs=39.9

Q ss_pred             CCceEEEEecCCCCCCC--CCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEe
Q 016718           30 GGRRVSLSGSFTRWSEP--MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW   80 (384)
Q Consensus        30 ~~~~V~v~GsF~~W~~~--~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w   80 (384)
                      ..+++||+|++++|...  .+|.+....++.|...+.|+.|. +|||.-+..|
T Consensus        11 ~p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~   62 (221)
T 4fch_A           11 PPKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENE   62 (221)
T ss_dssp             CCSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTC
T ss_pred             CcceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCc
Confidence            35789999999998743  57877655579999999998875 8999887555

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=86.68  E-value=0.5  Score=49.11  Aligned_cols=58  Identities=12%  Similarity=0.114  Sum_probs=41.2

Q ss_pred             eEEEEE-e----eCCCceEEEEecCCCCCCCCCCCC--CC--CCCCeEEEEEecCCceEEEEEEEcC
Q 016718           21 VPVRFI-W----PNGGRRVSLSGSFTRWSEPMPMSP--SE--GCPAVFQIICRLPPGHHQYKFYVDG   78 (384)
Q Consensus        21 ~~v~f~-w----~~~~~~V~v~GsF~~W~~~~~m~~--~~--~~~~~~~~~~~L~~G~y~YkFiVDG   78 (384)
                      ..++|+ |    ...+++|.|++.|++-...++|.+  ..  +..|+|++.++.......|+|.|+|
T Consensus        30 ~~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           30 QSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             CEEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            356776 5    346899999999975112378987  32  1247999999876666789999964

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=86.61  E-value=0.54  Score=51.68  Aligned_cols=63  Identities=13%  Similarity=0.229  Sum_probs=45.1

Q ss_pred             EEEE-eeCCCceEEEEe-cCCCCCC---CCCCCCCCCCCCeEEEEEecC--Cc-----eEEEEEEEc--CE--eecCCCC
Q 016718           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLP--PG-----HHQYKFYVD--GE--WRHDENQ   86 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~G-sF~~W~~---~~~m~~~~~~~~~~~~~~~L~--~G-----~y~YkFiVD--G~--w~~d~~~   86 (384)
                      +.|+ |...|++|.|++ +|++|..   .++|.+.  ..|+|++.++-.  +|     -+.|+|.|+  |.  ...||..
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa  410 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG--ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  410 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC--GGGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccC--CCCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccc
Confidence            6776 677899999999 8998864   4789874  378999888642  23     256777775  53  4577754


Q ss_pred             C
Q 016718           87 P   87 (384)
Q Consensus        87 p   87 (384)
                      .
T Consensus       411 ~  411 (1014)
T 2ya1_A          411 K  411 (1014)
T ss_dssp             S
T ss_pred             e
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	2e-25
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	3e-25
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-15
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-13

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 96.3 bits (239), Expect = 2e-25
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 18 SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
          S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1  SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 78 GEWRHDENQPHVSGNYGVVNCV 99
           E R  +  P  +   G     
Sbjct: 61 NELRVSDFLPTATDQMGNFVNY 82

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 95.7 bits (238), Expect = 3e-25
 Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 21  VPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW 80
            P  F W  GG+ V LSGSF  WS  +PM+ S+     F  I  LP G HQYKF+VDG+W
Sbjct: 2   RPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQN---NFVAILDLPEGEHQYKFFVDGQW 57

Query: 81  RHDENQPHVSGNYGVVNCVYIAVPQPDM 108
            HD ++P V+   G VN + I V + D 
Sbjct: 58  THDPSEPIVTSQLGTVNNI-IQVKKTDF 84

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 72.3 bits (176), Expect = 1e-15
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 206
            I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+
Sbjct: 12  EIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLT 71

Query: 207 ALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 266
             DF+ +++    + S               ++ K +L   R+++      P   +   P
Sbjct: 72  MADFVNVIKYYYQSSSFPEAI---------AEIDKFRLLGLREVERKIGAIPPETIYVHP 122

Query: 267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 321
             SL +  L + +++   +P+I   G  GS   I+ + +   ILK I  + K ++
Sbjct: 123 MHSLMDACLAMSKSRARRIPLIDVDGETGSEM-IVSVLTQYRILKFISMNCKETA 176

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.0 bits (160), Expect = 1e-13
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
            ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+ 
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65

Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DFI IL     +      E  E    +  +V                   +PLV   P 
Sbjct: 66  TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSF-------------KPLVCISPN 112

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313
            SL +    +++NK+  +P+I            LY+ +   ILK +
Sbjct: 113 ASLFDAVSSLIRNKIHRLPVIDPES-----GNTLYILTHKRILKFL 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.95
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.94
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.93
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.93
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.82
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.81
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.8
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.8
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.79
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.79
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.79
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.79
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.78
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.77
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.76
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.76
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.74
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.74
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.74
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.74
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.72
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.72
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.71
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.7
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.68
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.68
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.67
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.54
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.5
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.49
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.47
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.46
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.46
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.45
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.45
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.43
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.41
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.4
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.39
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.37
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.37
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.36
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.32
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.31
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.31
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.31
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.3
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.27
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.27
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.26
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.23
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.23
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.2
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.45
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.33
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.78
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.76
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.71
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.7
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.55
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.47
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	94.79
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	94.48
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	91.52
d1ji1a1	122	Maltogenic amylase, N-terminal domain N {Thermoact	84.44

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.95  E-value=1.4e-27  Score=209.83  Aligned_cols=167  Identities=23%  Similarity=0.415  Sum_probs=132.3

Q ss_pred             HHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCC-
Q 016718          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG-  221 (384)
Q Consensus       143 ~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~-  221 (384)
                      ..++++++||+.++|||+||.+++++++++++|+.+|+++|.+++++++||||++.++++|+||.+||+.++....... 
T Consensus         8 ~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~   87 (179)
T d2ooxe1           8 GALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSS   87 (179)
T ss_dssp             HHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhcccccc
Confidence            5688999999999999999999999999999999999999999999999999976789999999999999876544321 


Q ss_pred             CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEE
Q 016718          222 SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL  301 (384)
Q Consensus       222 ~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lv  301 (384)
                      ......++.......+........          .|.++++++.++++|.+|+.+|.++++||+||+|++.+.+ ..+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~-~~~vv  156 (179)
T d2ooxe1          88 FPEAIAEIDKFRLLGLREVERKIG----------AIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG-SEMIV  156 (179)
T ss_dssp             CGGGGGGGGGSBHHHHHHHHHHTT----------CSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTC-CEEEE
T ss_pred             chhhhhhhhccchhhhcccceeee----------ecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcC-CCcEE
Confidence            111112222222222222222111          4789999999999999999999999999999999622111 12799


Q ss_pred             EEeeHHHHHHHHHhhcccC
Q 016718          302 YLASLSDILKCICRHFKHS  320 (384)
Q Consensus       302 Giit~~dil~~l~~~~~~~  320 (384)
                      ||||++||+++|+.|+++.
T Consensus       157 giiT~~dIlk~l~~~~~~~  175 (179)
T d2ooxe1         157 SVLTQYRILKFISMNCKET  175 (179)
T ss_dssp             EEEEHHHHHHHHHTTCGGG
T ss_pred             EEEeHHHHHHHHHHhhhHh
Confidence            9999999999999998763

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.94  E-value=2.4e-27  Score=184.83  Aligned_cols=85  Identities=31%  Similarity=0.636  Sum_probs=78.9

Q ss_pred             ceeEEEEEeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCeeeCCCCCeee
Q 016718           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNC   98 (384)
Q Consensus        19 ~~~~v~f~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~~d~~G~~nN   98 (384)
                      ..+||+|+|+++|++|+|+||||||++..+|.+....+|.|++++.||||.|+|||+|||+|++|+++|++.|++|+.||
T Consensus         2 ~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nn   81 (87)
T d2qlvb1           2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (87)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             eEEEEEEEECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeE
Confidence            46999999999999999999999999987776655457899999999999999999999999999999999999999999


Q ss_pred             EEEecc
Q 016718           99 VYIAVP  104 (384)
Q Consensus        99 vi~v~~  104 (384)
                      +|+| +
T Consensus        82 vi~V-~   86 (87)
T d2qlvb1          82 YIEV-R   86 (87)
T ss_dssp             EEEE-C
T ss_pred             EEEE-E
Confidence            9999 5

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3.7e-26  Score=196.82  Aligned_cols=154  Identities=34%  Similarity=0.595  Sum_probs=123.5

Q ss_pred             HHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCCh
Q 016718          147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE  226 (384)
Q Consensus       147 ~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~  226 (384)
                      .|.+||+..||+|+||.+.++++++.++|+.+|+++|.+|+++++||+|++.++++|+||.+||+..+........ ...
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~-~~~   83 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL-VQI   83 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT-TTC
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcccccc-chh
Confidence            6889999999999999999999999999999999999999999999999767899999999999988764332100 000


Q ss_pred             hhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeH
Q 016718          227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  306 (384)
Q Consensus       227 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~  306 (384)
                      ..........+.....            ..|.+++++++|+++|.+|+.+|.++++||+||+|+  ++|   +++||||+
T Consensus        84 ~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~--~~g---~~~GivT~  146 (159)
T d2v8qe2          84 YELEEHKIETWREVYL------------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLYILTH  146 (159)
T ss_dssp             CCGGGCBHHHHHHHHS------------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEEEECH
T ss_pred             hhhhhhhcccccceee------------eeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC--CCC---eEEEEEeH
Confidence            1111112212211111            147899999999999999999999999999999984  446   89999999


Q ss_pred             HHHHHHHHhhcc
Q 016718          307 SDILKCICRHFK  318 (384)
Q Consensus       307 ~dil~~l~~~~~  318 (384)
                      +||+++|..+.+
T Consensus       147 ~dilk~l~~~~~  158 (159)
T d2v8qe2         147 KRILKFLKLFIT  158 (159)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcC
Confidence            999999987654

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.93  E-value=2.1e-26  Score=179.31  Aligned_cols=84  Identities=45%  Similarity=0.896  Sum_probs=77.1

Q ss_pred             eeEEEEEeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCeeeCCCCCeeeE
Q 016718           20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (384)
Q Consensus        20 ~~~v~f~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~~d~~G~~nNv   99 (384)
                      +.|++|+|+++|++|+|+|||+||++ .+|.+.   +|.|++++.||||.|+|||+|||+|++|+++|++.|+.|+.||+
T Consensus         1 ~~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~~---~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnv   76 (87)
T d1z0na1           1 ARPTVFRWTGGGKEVYLSGSFNNWSK-LPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI   76 (87)
T ss_dssp             CEEEEEEECSCCSCEEEEEGGGTTCC-EECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEEEEeCCCCc-cccccC---CCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEE
Confidence            47999999999999999999999986 567653   68999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCC
Q 016718          100 YIAVPQPDM  108 (384)
Q Consensus       100 i~v~~~~~~  108 (384)
                      |.| ++.|.
T Consensus        77 i~V-~~~D~   84 (87)
T d1z0na1          77 IQV-KKTDF   84 (87)
T ss_dssp             EEE-CSCTT
T ss_pred             EEE-CCCcc
Confidence            999 76553

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=5.7e-21  Score=163.36  Aligned_cols=148  Identities=21%  Similarity=0.272  Sum_probs=104.7

Q ss_pred             hhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC-CCChhhhhh
Q 016718          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS-NLTEEELET  231 (384)
Q Consensus       153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~-~~~~~~l~~  231 (384)
                      ++.++.++|  ++.++++.+++|+.+|+++|.+++++++||+|+ +++++|+||..|++..+........ .........
T Consensus         2 ~~~~v~~~m--~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~   78 (156)
T d2yzqa1           2 KGVEIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEE   78 (156)
T ss_dssp             GGCBSTTTS--BSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC--------------
T ss_pred             CCCCHHHHh--cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC-CCCceeEEeeeechhhhcccccccccccccchhhh
Confidence            577899999  778999999999999999999999999999996 6899999999999764332111100 000000000


Q ss_pred             hhHH-----HHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeH
Q 016718          232 HTIS-----AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  306 (384)
Q Consensus       232 ~~i~-----~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~  306 (384)
                      +...     ...........    .....+|+++++++.++++|.+|+..|.+++++++||+|+   +|   +++||||+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~----~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~---~g---~lvGivt~  148 (156)
T d2yzqa1          79 WILESHPTLLFEKFELQLPN----KPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG---EG---DLIGLIRD  148 (156)
T ss_dssp             ------------------CC----CBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET---TT---EEEEEEEH
T ss_pred             hhhhhhhhhhHHHhhhcccC----CEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeC---CC---EEEEEEEH
Confidence            0000     00111001110    0011368999999999999999999999999999999984   46   89999999


Q ss_pred             HHHHHHH
Q 016718          307 SDILKCI  313 (384)
Q Consensus       307 ~dil~~l  313 (384)
                      +||+++|
T Consensus       149 ~Dil~~l  155 (156)
T d2yzqa1         149 FDLLKVL  155 (156)
T ss_dssp             HHHGGGG
T ss_pred             HHHHHHh
Confidence            9999986

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=8.6e-21  Score=156.40  Aligned_cols=122  Identities=18%  Similarity=0.281  Sum_probs=100.3

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .||.|+|  +.+++++++++++.+|+++|.+++++++||+|+ +++++|+||.+|++..+.......        .... 
T Consensus         1 tt~~diM--~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~~~Giit~~Di~~~~~~~~~~~--------~~~~-   68 (123)
T d1y5ha3           1 TTARDIM--NAGVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGLDP--------NTAT-   68 (123)
T ss_dssp             CCHHHHS--EETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTCCT--------TTSB-
T ss_pred             CCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCCceEEEec-cchhhhhhhhhhHhhhhhhcCCCc--------ccce-
Confidence            4789999  668999999999999999999999999999995 689999999999975432211110        0000 


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                        ..+                +|+.+++++++++++.+|+.+|.+++++++||+|+    |   +++||||.+||+++|
T Consensus        69 --v~~----------------im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~----~---~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          69 --AGE----------------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE----H---RLVGIVTEADIARHL  122 (123)
T ss_dssp             --HHH----------------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHTC
T ss_pred             --EEE----------------EeeccceeeeecchHHHHHHHHHHcCceEEEEEEC----C---EEEEEEEHHHHHhhC
Confidence              111                25788999999999999999999999999999983    6   899999999999874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.81  E-value=8.2e-20  Score=153.62  Aligned_cols=133  Identities=14%  Similarity=0.212  Sum_probs=106.3

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .++.|+|  +.+++++.+++|+.+|+++|.+++++++||+|+ +++++|+||.+|++.++.......... .......++
T Consensus         2 i~v~diM--~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~-~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMM--TRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQG-DSLAFETPL   77 (139)
T ss_dssp             CBGGGTS--EESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC----------CCCBH
T ss_pred             EEHHHhC--cCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc-cccccccccHHHHHHHHHhhhhhhhcc-cccccccch
Confidence            4789999  568899999999999999999999999999995 689999999999998776543221000 000000011


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                         .+                +|+++++++++++++.+|+.+|.+++++++||+|+    |   +++|+||.+||++++.
T Consensus        78 ---~~----------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~---~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          78 ---FE----------------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK----D---VLVGIITDSDFVTIAI  131 (139)
T ss_dssp             ---HH----------------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET----T---EEEEEECHHHHHHHHH
T ss_pred             ---hH----------------hhccccccccccchHHHHHHHHHHcCceEEEEEEC----C---EEEEEEEHHHHHHHHH
Confidence               11                37899999999999999999999999999999983    6   8999999999999998


Q ss_pred             hhc
Q 016718          315 RHF  317 (384)
Q Consensus       315 ~~~  317 (384)
                      ..+
T Consensus       132 ~~~  134 (139)
T d2o16a3         132 NLL  134 (139)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=5.3e-20  Score=153.34  Aligned_cols=130  Identities=18%  Similarity=0.194  Sum_probs=106.3

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .||.++|..+.+|+++++++|+.+|+++|.+++++++||+|+ +++++|+||.+|+++.+.....    ...+.....++
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~-~~~~vGiit~~di~~~~~~~~~----~~~~~~~~~~v   76 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLER----IEFEKLDQITV   76 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSSS----BCGGGTTTSBH
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeec-ccccccEEEcchhHHHhhcccc----ccccccccccc
Confidence            578999988999999999999999999999999999999995 6899999999999877642211    11122222222


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                         .+                +|+++++++++++++.+|+.+|.+++  .+||+|+   +|   +++||||.+||++++.
T Consensus        77 ---~~----------------~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~---~~---~~~Givt~~dil~~l~  129 (132)
T d1yava3          77 ---EE----------------VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEND---EQ---VFEGIFTRRVVLKELN  129 (132)
T ss_dssp             ---HH----------------HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECT---TC---BEEEEEEHHHHHHHHH
T ss_pred             ---cc----------------cccccccccccchhHHHHHHHHHhCC--EEEEEcc---CC---EEEEEEEHHHHHHHHH
Confidence               11                26788999999999999999998875  5999984   46   8999999999999998


Q ss_pred             hh
Q 016718          315 RH  316 (384)
Q Consensus       315 ~~  316 (384)
                      ++
T Consensus       130 ~~  131 (132)
T d1yava3         130 KH  131 (132)
T ss_dssp             HH
T ss_pred             hh
Confidence            75

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.80  E-value=3.9e-19  Score=151.75  Aligned_cols=149  Identities=14%  Similarity=0.093  Sum_probs=108.6

Q ss_pred             hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC-CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh
Q 016718          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (384)
Q Consensus       154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~-~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (384)
                      ..+|.|+|  +..++++++++|+.+|+++|.+++++++||+|+. .+.++|++|..|++..+............+..  .
T Consensus        10 ~~~V~diM--~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~--~   85 (160)
T d2d4za3          10 NIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEM--L   85 (160)
T ss_dssp             SCBTTSSS--BSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSC--C
T ss_pred             ceEHHHhc--CCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhc--c
Confidence            56899999  5689999999999999999999999999999953 47899999999999987643322110000000  0


Q ss_pred             hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                      +............. .........|.++++++.|+++|.+|+.+|.+++++++||+|+    |   +++||||++||+++
T Consensus        86 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~----g---~lvGiIt~~Di~k~  157 (160)
T d2d4za3          86 TLEEIYRWEQREKN-VVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM----G---KLVGVVALAEIQAA  157 (160)
T ss_dssp             BHHHHHHHHHHHTT-CBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHH
T ss_pred             ccchhhhhhhhhcc-cccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC----C---EEEEEEEHHHHHHH
Confidence            11111111111000 0011122368889999999999999999999999999999972    7   89999999999998


Q ss_pred             HH
Q 016718          313 IC  314 (384)
Q Consensus       313 l~  314 (384)
                      +.
T Consensus       158 I~  159 (160)
T d2d4za3         158 IE  159 (160)
T ss_dssp             HH
T ss_pred             hC
Confidence            74

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.79  E-value=2.1e-19  Score=148.78  Aligned_cols=126  Identities=14%  Similarity=0.222  Sum_probs=106.0

Q ss_pred             hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (384)
Q Consensus       152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (384)
                      |+..++.|+|  +.+++++++++|+.+|+++|.+++++.+||.|+  ++++|++|..|+++.+......  ..       
T Consensus         1 l~~~~V~d~m--~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~--~~-------   67 (127)
T d2ef7a1           1 MEEEIVKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSL--ET-------   67 (127)
T ss_dssp             CCCCBGGGTS--BCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCT--TC-------
T ss_pred             CCccCHHHhC--CCCCeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccc--cc-------
Confidence            4567899999  668999999999999999999999999999984  7999999999998876532111  00       


Q ss_pred             hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (384)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~  311 (384)
                       ++   .                .+|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+||++
T Consensus        68 -~v---~----------------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~lvGiit~~Dll~  121 (127)
T d2ef7a1          68 -KA---E----------------EFMTASLITIREDSPITGALALMRQFNIRHLPVVDD---KG---NLKGIISIRDITR  121 (127)
T ss_dssp             -BG---G----------------GTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHH
T ss_pred             -hh---h----------------hhhhhhccccccccchhHHHHHHHHcCceEEEEEeC---CC---eEEEEEEHHHHHH
Confidence             00   0                146788999999999999999999999999999983   46   8999999999999


Q ss_pred             HHHhh
Q 016718          312 CICRH  316 (384)
Q Consensus       312 ~l~~~  316 (384)
                      ++...
T Consensus       122 ~i~~~  126 (127)
T d2ef7a1         122 AIDDM  126 (127)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            99764

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=2.5e-19  Score=151.10  Aligned_cols=139  Identities=13%  Similarity=0.129  Sum_probs=104.4

Q ss_pred             hhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCC---hhhh
Q 016718          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT---EEEL  229 (384)
Q Consensus       153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~---~~~l  229 (384)
                      +-..+.++|  +.+++++.+++|+.+|+++|.++++.++||+|+ +++++|+||..||+.++...........   ...+
T Consensus         2 k~~~v~~~m--~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~   78 (145)
T d1o50a3           2 KVKDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-DNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSM   78 (145)
T ss_dssp             BHHHHTTSS--CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE-TTEEEEEEEHHHHHHHHHHHHHCCCC-------CC
T ss_pred             cceEhHHhC--CCCCEEECCcCcHHHHHHHHHHcCCceEEEecc-CcceeeeeccchhhhhhhcccccccchhHHHHhhh
Confidence            345678888  557789999999999999999999999999995 6899999999999987754322110000   0000


Q ss_pred             hhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHH
Q 016718          230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (384)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~di  309 (384)
                      .......+..                +| .+++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||++||
T Consensus        79 ~~~~~~~~~~----------------~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~---~g---~i~Gvit~~di  135 (145)
T d1o50a3          79 KRLIAKNASE----------------IM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDE---KG---EIVGDLNSLEI  135 (145)
T ss_dssp             CCCSSCBHHH----------------HC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHH
T ss_pred             hhccccCHHH----------------Hc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeC---CC---eEEEEEEHHHH
Confidence            0000000000                23 44578999999999999999999999999983   46   89999999999


Q ss_pred             HHHHHhhc
Q 016718          310 LKCICRHF  317 (384)
Q Consensus       310 l~~l~~~~  317 (384)
                      +++|.+..
T Consensus       136 l~~l~~~~  143 (145)
T d1o50a3         136 LLALWKGR  143 (145)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhcC
Confidence            99998754

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=6.6e-19  Score=148.02  Aligned_cols=133  Identities=18%  Similarity=0.258  Sum_probs=100.4

Q ss_pred             cccccc-CCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          155 HTVYEL-LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       155 ~~~~dv-mp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      .++.|+ +..+.+++++++++|+.+|+++|.+++++++||+|+ .++++|+||.+|+++.+..........        .
T Consensus         6 ~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vG~it~~Di~~~~~~~~~~~~~~--------~   76 (140)
T d2nyca1           6 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYNDLSL--------S   76 (140)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC----CCS--------B
T ss_pred             CcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCeEcceehhhHHHHHHhhcccccccc--------c
Confidence            567776 445778999999999999999999999999999995 689999999999998776432211000        0


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      .   ...+..-          ..+..+++++.++++|.+|+++|.+++++++||+|+   +|   +++|+||.+||++++
T Consensus        77 ~---~~~~~~~----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~---~~---~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          77 V---GEALMRR----------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD---VG---RLVGVLTLSDILKYI  137 (140)
T ss_dssp             H---HHHHHHC----------C------CEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---BEEEEEEHHHHHHHH
T ss_pred             h---hhhhhhh----------hhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeC---CC---eEEEEEEHHHHHHHH
Confidence            1   1111100          024677899999999999999999999999999983   46   899999999999998


Q ss_pred             Hh
Q 016718          314 CR  315 (384)
Q Consensus       314 ~~  315 (384)
                      ..
T Consensus       138 ~~  139 (140)
T d2nyca1         138 LL  139 (140)
T ss_dssp             HH
T ss_pred             hc
Confidence            63

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.79  E-value=1.7e-19  Score=149.37  Aligned_cols=123  Identities=19%  Similarity=0.280  Sum_probs=99.8

Q ss_pred             cccccCCC-CCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          156 TVYELLPD-SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       156 ~~~dvmp~-s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      |+.|+|.. .+.++++++++|+.+|+++|.+++++++||.|  +++++|+||.+|+++.+......        .....+
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~--~~~~vGiit~~Di~~~~~~~~~~--------~~~~~v   72 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLDKP--------VKDTQV   72 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGSSSC--------GGGSBG
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEccchhhhhhhhccc--------ccceeE
Confidence            56677733 35789999999999999999999999999998  47999999999997654322111        000000


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                                         ..+|+++++++.+++++.+|+.+|.+++++++||+|+    |   +++|+||.+||++++.
T Consensus        73 -------------------~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~---~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          73 -------------------KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD----G---KVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             -------------------GGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHHH
T ss_pred             -------------------eeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEEC----C---EEEEEEEHHHHHHHHh
Confidence                               0147899999999999999999999999999999983    6   8999999999999875

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1.1e-18  Score=145.33  Aligned_cols=125  Identities=22%  Similarity=0.317  Sum_probs=104.0

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      ..+.|+|  +.+++++++++|+.+|+++|.+++++++||+|+ +++++|+||..|+++.+.....   ..      ..++
T Consensus         5 ~pV~~im--~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~~~---~~------~~~v   72 (132)
T d2yzia1           5 APIKVYM--TKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPGL---PY------DIPV   72 (132)
T ss_dssp             SBGGGTC--BCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCC---CT------TSBG
T ss_pred             CcHHHHc--CCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc-cceeeeeeeHHHHHHHHhhccC---cc------ceeE
Confidence            3688999  668999999999999999999999999999996 6899999999999865432111   00      0001


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                         .                .+|.++++++++++++.+|+.+|.+++++++||++    +|   +++|+||.+||++++.
T Consensus        73 ---~----------------~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~----~~---~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          73 ---E----------------RIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE----EG---KIVGIFTLSDLLEASR  126 (132)
T ss_dssp             ---G----------------GTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHH
T ss_pred             ---e----------------ecccccccccCcchHHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHHHHHH
Confidence               0                14788999999999999999999999999999986    26   8999999999999987


Q ss_pred             hhc
Q 016718          315 RHF  317 (384)
Q Consensus       315 ~~~  317 (384)
                      +.+
T Consensus       127 ~~l  129 (132)
T d2yzia1         127 RRL  129 (132)
T ss_dssp             CCS
T ss_pred             HHH
Confidence            654

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.77  E-value=2.3e-18  Score=141.01  Aligned_cols=119  Identities=21%  Similarity=0.275  Sum_probs=100.0

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      ++.|+|  +.+++++++++|+.+|++.|.+++++.+||.|  +++++|+||.+|+++++......         ....+ 
T Consensus         1 kV~diM--~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~--~~~~~Gvit~~Di~~~l~~~~~~---------~~~~v-   66 (120)
T d1pbja3           1 RVEDVM--VTDVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDDL---------AEVKV-   66 (120)
T ss_dssp             CHHHHC--BCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCCT---------TTSBH-
T ss_pred             ChHHhC--CCCCeEECCcCcHHHHHHHHHHcCceEEEEEe--CCcEEEEEEeeeccccccccccc---------cceeE-
Confidence            367899  56888999999999999999999999999998  37999999999999877643211         01111 


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                        .+                +|+++++++++++++.+|+.+|.+++++++||+|+    |   +++|++|.+||+++.
T Consensus        67 --~~----------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~----~---~l~Givt~~Dil~A~  119 (120)
T d1pbja3          67 --WE----------------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED----D---EIIGVISATDILRAK  119 (120)
T ss_dssp             --HH----------------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHH
T ss_pred             --ee----------------ecccccccccchhHHHHHHHHHHHcCCeEEEEEEC----C---EEEEEEEHHHHHhcC
Confidence              22                26789999999999999999999999999999872    6   899999999999985

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=7.1e-19  Score=148.47  Aligned_cols=126  Identities=19%  Similarity=0.288  Sum_probs=103.9

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .++.|+|  +.+++++++++++.+|++.|.++++..+||+|+ .++++|+||.+|+++.+.......        ....+
T Consensus         3 m~v~dim--~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~-~~~~~Giit~~di~~~~~~~~~~~--------~~~~v   71 (142)
T d1pvma4           3 MRVEKIM--NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRNKKP--------DEVPI   71 (142)
T ss_dssp             CBGGGTS--BTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGCCCG--------GGSBG
T ss_pred             EEHHHhC--CCCCcEECCcCcHHHHHHHHHHCCCceEeeecc-CCcccceEEeechhhhhhhhcccc--------ccccc
Confidence            4688999  678899999999999999999999999999995 689999999999976543221110        00000


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                                         ..+|++++++++++++|.+|+++|.+++++++||+|+   +|   +++|+||..||++++.
T Consensus        72 -------------------~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~g---~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          72 -------------------RLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD---PG---RVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             -------------------GGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT---TC---CEEEEEEHHHHTTTSC
T ss_pred             -------------------ccccccccccccchhhHHHHHHHHHHcCCcEEEEEec---CC---EEEEEEEHHHHHHHHh
Confidence                               0147899999999999999999999999999999984   46   8999999999999876


Q ss_pred             hh
Q 016718          315 RH  316 (384)
Q Consensus       315 ~~  316 (384)
                      ..
T Consensus       127 ~~  128 (142)
T d1pvma4         127 RA  128 (142)
T ss_dssp             HH
T ss_pred             hh
Confidence            53

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.76  E-value=2.1e-18  Score=144.65  Aligned_cols=132  Identities=17%  Similarity=0.282  Sum_probs=106.1

Q ss_pred             ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      .++.++|  +.+++++++++|+.+|+++|.+++++++||+|. +++++|++|..|+++.+....... ..  .......+
T Consensus         2 ~~V~~iM--t~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~-~~~~~g~i~~~di~~~~~~~~~~~-~~--~~~~~~~v   75 (141)
T d3ddja1           2 FPVKVFM--STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAKAVDKL-DP--DYFYGKVV   75 (141)
T ss_dssp             CBHHHHS--BCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHHHHT-CT--HHHHTCBH
T ss_pred             EeeHHhC--cCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc-cCccccccccccchhhhhcccccc-cc--ccccCCCH
Confidence            3578899  557999999999999999999999999999995 689999999999988765322110 00  11111111


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                         .+                +|+++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+||++++.
T Consensus        76 ---~~----------------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~---~~---~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          76 ---KD----------------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK---DN---TIRGIITERDLLIALH  130 (141)
T ss_dssp             ---HH----------------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHH
T ss_pred             ---HH----------------HhCcccccccccchhhHHHHHHHHcCCCEEEEEcc---CC---EEEEEEEHHHHHHHHH
Confidence               11                37889999999999999999999999999999983   46   8999999999999998


Q ss_pred             hhc
Q 016718          315 RHF  317 (384)
Q Consensus       315 ~~~  317 (384)
                      ..+
T Consensus       131 ~~~  133 (141)
T d3ddja1         131 HIL  133 (141)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.74  E-value=5.3e-18  Score=144.61  Aligned_cols=130  Identities=15%  Similarity=0.226  Sum_probs=102.0

Q ss_pred             cccCC-CCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHH
Q 016718          158 YELLP-DSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  236 (384)
Q Consensus       158 ~dvmp-~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~  236 (384)
                      .+++. +..+++++++++|+.+|+++|.+++++++||+|+ .++++|+||.+|++..+......       .+ ..++  
T Consensus         4 ~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-~~~~vG~it~~Dl~~~~~~~~~~-------~~-~~~v--   72 (153)
T d2ooxe2           4 NQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDYS-------NL-DLSV--   72 (153)
T ss_dssp             GGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-GGBEEEEEEHHHHHHHHGGGCGG-------GG-GSBH--
T ss_pred             HHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-cceEEEEEEeeeeeehhcccccc-------cc-ccch--
Confidence            34442 3468999999999999999999999999999995 68999999999998776532211       01 1111  


Q ss_pred             HHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          237 WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                       .+.+....          .+..+++++.++++|.+|+.+|.+++++++||+|+   +|   +++||||++||++++..
T Consensus        73 -~~~~~~~~----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          73 -GEALLKRP----------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE---NL---KLEGILSLADILNYIIY  134 (153)
T ss_dssp             -HHHHHTSC----------CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT---TC---BEEEEEEHHHHHHHHHS
T ss_pred             -hhheeeee----------cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC---CC---EEEEEEEHHHHHHHHHc
Confidence             22221111          35678899999999999999999999999999983   46   89999999999999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=3.9e-18  Score=143.88  Aligned_cols=133  Identities=19%  Similarity=0.289  Sum_probs=102.1

Q ss_pred             ccccccCC-CCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718          155 HTVYELLP-DSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (384)
Q Consensus       155 ~~~~dvmp-~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (384)
                      .++.|+.- ...+++++.+++|+.+|+++|.+++++++||+|+ +++++|+||..|++..+......  ..     . .+
T Consensus         9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~-~~~~~Gvit~~di~~~l~~~~~~--~~-----~-~~   79 (145)
T d2v8qe1           9 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTYN--NL-----D-VS   79 (145)
T ss_dssp             SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCCC--CC-----S-SB
T ss_pred             CCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCccccccc-CCceEEEEEcchhhhhhhccccc--ch-----h-hh
Confidence            35555542 2357899999999999999999999999999995 78999999999997655321111  00     0 01


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (384)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l  313 (384)
                      +   .+.....          ..|..+++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||++||+++|
T Consensus        80 v---~~~~~~~----------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~g---~l~GiVt~~dii~~l  140 (145)
T d2v8qe1          80 V---TKALQHR----------SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE---HD---VVKGIVSLSDILQAL  140 (145)
T ss_dssp             H---HHHGGGC----------CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---BEEEEEEHHHHHHHH
T ss_pred             h---hhccchh----------hhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc---CC---EEEEEEEHHHHHHHH
Confidence            1   1111110          136788999999999999999999999999999973   46   899999999999998


Q ss_pred             Hh
Q 016718          314 CR  315 (384)
Q Consensus       314 ~~  315 (384)
                      ..
T Consensus       141 v~  142 (145)
T d2v8qe1         141 VL  142 (145)
T ss_dssp             HS
T ss_pred             Hh
Confidence            74

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=9.6e-19  Score=143.83  Aligned_cols=118  Identities=16%  Similarity=0.258  Sum_probs=85.9

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      ++.|+|  +.+++++++++|+.+|+++|.++++.++||+|+ .|+++|+||.+|++.....                   
T Consensus         2 ~v~diM--~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~G~it~~dl~~~~~~-------------------   59 (122)
T d2yzqa2           2 RVKTIM--TQNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPDE-------------------   59 (122)
T ss_dssp             BHHHHS--EESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC-------------------------
T ss_pred             Cccccc--CCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec-cccchhhhhcchhhhhhcc-------------------
Confidence            577889  557889999999999999999999999999995 7899999999998642110                   


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                         ...            ..+|..+++++++++++.+|+.+|.+++++++||+|.   +|   +++|+||.+||++++..
T Consensus        60 ---~~~------------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~---~~---~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          60 ---EQL------------AMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             -------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTT
T ss_pred             ---cch------------hhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeC---CC---EEEEEEEHHHHHHHHHh
Confidence               000            0146788999999999999999999999999999983   46   89999999999998765


Q ss_pred             h
Q 016718          316 H  316 (384)
Q Consensus       316 ~  316 (384)
                      +
T Consensus       119 ~  119 (122)
T d2yzqa2         119 K  119 (122)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.74  E-value=5.2e-18  Score=140.07  Aligned_cols=111  Identities=19%  Similarity=0.287  Sum_probs=92.0

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeC-CCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~-~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (384)
                      .++++.+++|+.+|+++|.+++++++||+|+ ..++++|+||.+|++....   .+ ...                    
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~---~~-~~~--------------------   61 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD---YN-API--------------------   61 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC---SS-SBT--------------------
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhc---cC-Cce--------------------
Confidence            4578999999999999999999999999995 2578999999999854211   00 000                    


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                              ...+|+.+++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||.+||++++.
T Consensus        62 --------~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~---~g---~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          62 --------SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN---SG---RLSGLITIKDIEKVIE  117 (126)
T ss_dssp             --------TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT---TS---BEEEEEEHHHHHHHHH
T ss_pred             --------eeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcC---CC---eEEEEEEHHHHHHHhh
Confidence                    00136788999999999999999999999999999983   46   8999999999999875

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.72  E-value=1.3e-17  Score=138.12  Aligned_cols=122  Identities=16%  Similarity=0.144  Sum_probs=100.9

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeC-CCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~-~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (384)
                      ++.|+|  +.+++++++++|+.+|+++|.++++.++||++. +.++++|++|..|+++.+........ .          
T Consensus         2 ~V~dim--~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~-~----------   68 (131)
T d2riha1           2 RTSELL--KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG-P----------   68 (131)
T ss_dssp             BGGGGC--CSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTS-B----------
T ss_pred             CHHHhc--cCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccccc-c----------
Confidence            689999  668899999999999999999999999999953 35789999999999877653221100 0          


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~  314 (384)
                         .                ..+..++.++.+++++.+|+++|.+++++++||+|.   +|   +++||||..||+++++
T Consensus        69 ---~----------------~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~---~g---~l~Giit~~Dll~~~~  123 (131)
T d2riha1          69 ---A----------------MPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNK---NG---ELVGVLSIRDLCFERA  123 (131)
T ss_dssp             ---S----------------GGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHSCHH
T ss_pred             ---c----------------ccccccceeEeeecchHHHHHHHHHCCeEEEEEEcC---CC---eEEEEEEHHHHHHHHH
Confidence               0                013567789999999999999999999999999983   46   8999999999999876


Q ss_pred             h
Q 016718          315 R  315 (384)
Q Consensus       315 ~  315 (384)
                      .
T Consensus       124 ~  124 (131)
T d2riha1         124 I  124 (131)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.72  E-value=1.5e-17  Score=137.65  Aligned_cols=118  Identities=21%  Similarity=0.274  Sum_probs=99.4

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHc-----CCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhh
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~-----~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (384)
                      |+..+|  +..++++.+++|+.+|++.|.++     ++..+||+|+ .++++|+++.+|++..      . ...      
T Consensus         2 taG~iM--~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~~l~~~------~-~~~------   65 (127)
T d2ouxa2           2 TAGAIM--TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVN------D-DDT------   65 (127)
T ss_dssp             BHHHHC--BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTS------C-TTS------
T ss_pred             ChhHhC--CCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec-CCeEEEEEEeeccccc------c-ccE------
Confidence            678899  77899999999999999999988     4789999995 7899999999988521      1 000      


Q ss_pred             hhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                        +   +.+                +|+++++++++++++.+|+++|.+++++++||+|+   +|   +|+|+||..||+
T Consensus        66 --~---v~~----------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~---~g---~lvGiIt~~Dil  118 (127)
T d2ouxa2          66 --L---IAD----------------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY---DD---HLLGIVTVDDII  118 (127)
T ss_dssp             --B---HHH----------------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHH
T ss_pred             --E---hhh----------------hccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeC---CC---EEEEEEEHHHHH
Confidence              0   122                37889999999999999999999999999999983   47   999999999999


Q ss_pred             HHHHhh
Q 016718          311 KCICRH  316 (384)
Q Consensus       311 ~~l~~~  316 (384)
                      +++-+.
T Consensus       119 ~~i~ee  124 (127)
T d2ouxa2         119 DVIDDE  124 (127)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988653

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=4.9e-18  Score=143.65  Aligned_cols=119  Identities=18%  Similarity=0.303  Sum_probs=100.4

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcC-----CCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhh
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~-----i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (384)
                      |+.++|  +.+++++.+++|+.+|++.|.+++     +..+||+|+ .++++|+|+.+|++..    ... ..       
T Consensus         2 taG~iM--~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~dl~~~----~~~-~~-------   66 (144)
T d2yvxa2           2 EAGGLM--TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA----DPR-TR-------   66 (144)
T ss_dssp             SSGGGC--BSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT-TCBBCCBCBHHHHTTS----CTT-CB-------
T ss_pred             Cccccc--CCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC-CCCEecccchhhhhhc----ccc-cc-------
Confidence            678999  668999999999999999998884     889999995 7899999999998421    000 00       


Q ss_pred             hhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (384)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil  310 (384)
                                            ...+|+++++++.|++++.+|+++|.+++++++||+|+   +|   +|+|+||.+||+
T Consensus        67 ----------------------v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~---~g---~lvGiIt~~Dil  118 (144)
T d2yvxa2          67 ----------------------VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE---EG---RLVGIVTVDDVL  118 (144)
T ss_dssp             ----------------------STTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECS---SC---BEEEEEEHHHHH
T ss_pred             ----------------------hHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeE---CC---EEEEEEEHHHHH
Confidence                                  01157899999999999999999999999999999984   47   899999999999


Q ss_pred             HHHHhhc
Q 016718          311 KCICRHF  317 (384)
Q Consensus       311 ~~l~~~~  317 (384)
                      +++....
T Consensus       119 ~~l~~e~  125 (144)
T d2yvxa2         119 DVLEAEA  125 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987654

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-17  Score=144.29  Aligned_cols=154  Identities=11%  Similarity=0.098  Sum_probs=104.0

Q ss_pred             ccccccCCC--CC-c-EEEEecCccHHHHHHHHHHcCCCeeeeeeC-CCCeEEEEeehHHHHHHHHHhccCCCCCChhhh
Q 016718          155 HTVYELLPD--SG-K-VTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEEL  229 (384)
Q Consensus       155 ~~~~dvmp~--s~-~-vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~-~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l  229 (384)
                      ..+.|+|..  +. . ++.+.++.|+.+|.++|.+++++++||+++ ++++++|+||.+|++.++...............
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            346678842  11 2 355678899999999999999999999953 467899999999999887643322111100000


Q ss_pred             hhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHH
Q 016718          230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (384)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~di  309 (384)
                      ...........  ........  ...+|.++++++.++++|.+|+++|.+++++++||+|+    |   +++||||++||
T Consensus        83 ~~~~~~~~~~~--~~~~~~~~--v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~----g---~lvGiIt~~Di  151 (169)
T d2j9la1          83 IYFTEHSPPLP--PYTPPTLK--LRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN----G---RLLGIITKKDV  151 (169)
T ss_dssp             EECSSSCCCCC--TTCCCCEE--CGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHH
T ss_pred             hhhcccchhhh--hccccccc--hhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEEC----C---EEEEEEEHHHH
Confidence            00000000000  00000000  11257888999999999999999999999999999873    6   89999999999


Q ss_pred             HHHHHhhccc
Q 016718          310 LKCICRHFKH  319 (384)
Q Consensus       310 l~~l~~~~~~  319 (384)
                      ++++.+...+
T Consensus       152 l~~l~~~~~~  161 (169)
T d2j9la1         152 LKHIAQMANQ  161 (169)
T ss_dssp             HHHHHHHCC-
T ss_pred             HHHHHHHhcC
Confidence            9999986544

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=4.5e-17  Score=133.40  Aligned_cols=118  Identities=16%  Similarity=0.240  Sum_probs=99.6

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      ++.++|  +.++.++++++|+.+|++.|.+++.+++||+|+ .++++|+||..|+++..    .. ..+           
T Consensus         2 ~v~~~m--~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-~~~~~Gii~~~dl~~~~----~~-~~v-----------   62 (121)
T d1vr9a3           2 KVKKWV--TQDFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLD----LD-SSV-----------   62 (121)
T ss_dssp             BGGGGC--BSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSC----TT-SBS-----------
T ss_pred             Cchhhh--cCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-CceeEEEeehhhhhhhh----cc-ccc-----------
Confidence            577888  567789999999999999999999999999985 78999999999996310    00 000           


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                        .                .+|..+++++++++++.+|+++|.++++.++||+|+   +|   +++|+||..|+++++.+
T Consensus        63 --~----------------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde---~g---~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          63 --F----------------NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE---EM---RLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             --G----------------GGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT---TC---BEEEEEEHHHHHHHHHH
T ss_pred             --c----------------ccccCccEEECCCCCHHHHHHHHHhcCceeeeeECC---CC---eEEEEEEHHHHHHHHHH
Confidence              0                136788899999999999999999999999999983   46   89999999999999986


Q ss_pred             h
Q 016718          316 H  316 (384)
Q Consensus       316 ~  316 (384)
                      .
T Consensus       119 ~  119 (121)
T d1vr9a3         119 A  119 (121)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=9.9e-18  Score=139.53  Aligned_cols=131  Identities=9%  Similarity=0.052  Sum_probs=100.6

Q ss_pred             cccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (384)
Q Consensus       156 ~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (384)
                      +|.|+|  ..+++++++++++.+|+++|.++|++++||+|.   +++|++|..|++..+....... .. ..        
T Consensus         2 ~V~~lM--~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~-~~-~~--------   66 (135)
T d3ddja2           2 NIETLM--IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDS-CS-QG--------   66 (135)
T ss_dssp             SGGGTC--EESCCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC----CC-HH--------
T ss_pred             EeeEEe--eCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccc-hh-hh--------
Confidence            578999  446789999999999999999999999999973   6999999999986553221110 00 00        


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~  315 (384)
                       .........       ...+|+.+++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+||++++..
T Consensus        67 -~~~~~~~~~-------v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g---~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          67 -DLYHISTTP-------IIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             -HHHHHHTSB-------GGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGGGGG
T ss_pred             -hccccccCC-------HHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeC---CC---EEEEEEEHHHHHHHHHH
Confidence             001111110       11258899999999999999999999999999999983   46   89999999999998753

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.67  E-value=1.3e-18  Score=142.65  Aligned_cols=112  Identities=22%  Similarity=0.321  Sum_probs=58.4

Q ss_pred             cEEEEecCccHHHHHHHHHHcCCCeeeeeeC--CCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDD--FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (384)
Q Consensus       166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~--~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (384)
                      +++++.+++||.+|+++|.+++++++||+|+  ..++++||||.+|+......           +++       .... .
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~-----------~~~-------~~~~-~   65 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE-----------EHD-------RFLE-E   65 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC-----------------------------------------
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcc-----------ccC-------ceeE-E
Confidence            4568999999999999999999999999984  25799999999997422110           000       0000 0


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (384)
Q Consensus       244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~  312 (384)
                      .          ..+..+++++.+++++.+|+++|.+++++++||+|+   +|   +++||||.+||++.
T Consensus        66 ~----------~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~---~~---~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          66 I----------MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNE---ND---ELVAIIARTDLKKN  118 (120)
T ss_dssp             C----------CSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEET---TT---EEEEEECHHHHHHH
T ss_pred             E----------EeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcC---CC---EEEEEEEHHHhhhc
Confidence            0          135668999999999999999999999999999983   46   89999999999986

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.54  E-value=6.5e-15  Score=123.11  Aligned_cols=106  Identities=14%  Similarity=0.126  Sum_probs=85.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++++++++.+|+++|.+++++++||+|+   +|   +++|+||.+|+++++.............    ..+.+
T Consensus         7 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~---~~---~~~Giit~~dl~~~~~~~~~~~~~~~~~----~~~~~   76 (139)
T d2o16a3           7 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQGDSL----AFETP   76 (139)
T ss_dssp             TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC-------------CCCB
T ss_pred             hCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc---cc---cccccccHHHHHHHHHhhhhhhhccccc----ccccc
Confidence            58899999999999999999999999999999984   46   8999999999999998765432111111    11122


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++       ++|.++++++++++++.+|+++|.+++++++||+
T Consensus        77 v~-------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  112 (139)
T d2o16a3          77 LF-------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVV  112 (139)
T ss_dssp             HH-------HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEE
T ss_pred             hh-------HhhccccccccccchHHHHHHHHHHcCceEEEEE
Confidence            33       3456899999999999999999999999999997

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=5.8e-15  Score=120.83  Aligned_cols=99  Identities=12%  Similarity=0.081  Sum_probs=82.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+|+++.+..+....      ..     ..
T Consensus         6 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~~~Giit~~Di~~~~~~~~~~~------~~-----~~   68 (123)
T d1y5ha3           6 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLDP------NT-----AT   68 (123)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCCT------TT-----SB
T ss_pred             hcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec---cc---hhhhhhhhhhHhhhhhhcCCCc------cc-----ce
Confidence            47889999999999999999999999999999984   36   8999999999998765442211      11     12


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++       ++|+++++++++++++.+|+++|.+++++++||+
T Consensus        69 v~-------~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVv  104 (123)
T d1y5ha3          69 AG-------ELARDSIYYVDANASIQEMLNVMEEHQVRRVPVI  104 (123)
T ss_dssp             HH-------HHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEE
T ss_pred             EE-------EEeeccceeeeecchHHHHHHHHHHcCceEEEEE
Confidence            22       3345799999999999999999999999999997

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=4.2e-14  Score=117.07  Aligned_cols=98  Identities=14%  Similarity=0.189  Sum_probs=82.8

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++++++++.+|+++|.+++++++||+|+   +|   +++|+||..|+++++..+..       .++.     +
T Consensus        10 im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~-------~~~~-----~   71 (132)
T d2yzia1          10 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL-------PYDI-----P   71 (132)
T ss_dssp             TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC-------CTTS-----B
T ss_pred             HcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc---cc---eeeeeeeHHHHHHHHhhccC-------ccce-----e
Confidence            58999999999999999999999999999999984   46   89999999999998764321       1122     2


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +       +++|.+++.++++++++.+|+++|.+++++++||+
T Consensus        72 v-------~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~  107 (132)
T d2yzia1          72 V-------ERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIE  107 (132)
T ss_dssp             G-------GGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             E-------eecccccccccCcchHHHHHHHHHHHcCCCEEEEE
Confidence            2       33446789999999999999999999999999985

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.47  E-value=5.1e-14  Score=118.08  Aligned_cols=99  Identities=11%  Similarity=0.077  Sum_probs=83.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++++++++.+|++.|.+++++++||+|+   +|   +++|+||.+|+++.+......      .     .+.+
T Consensus         8 im~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~---~~---~~~Giit~~di~~~~~~~~~~------~-----~~~~   70 (142)
T d1pvma4           8 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK------P-----DEVP   70 (142)
T ss_dssp             TSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC------G-----GGSB
T ss_pred             hCCCCCcEECCcCcHHHHHHHHHHCCCceEeeecc---CC---cccceEEeechhhhhhhhccc------c-----cccc
Confidence            58999999999999999999999999999999983   46   899999999999887643221      1     1223


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +++       +|+++++++++++++.+|+++|.+++++++||+
T Consensus        71 v~~-------im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVv  106 (142)
T d1pvma4          71 IRL-------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVV  106 (142)
T ss_dssp             GGG-------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEE
T ss_pred             ccc-------ccccccccccchhhHHHHHHHHHHcCCcEEEEE
Confidence            333       346799999999999999999999999999997

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.46  E-value=6.9e-14  Score=113.85  Aligned_cols=97  Identities=13%  Similarity=0.148  Sum_probs=82.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++.+++|+.+|++.|.+++++++||+++    |   +++|+||.+||++++.....       ..+     .+
T Consensus         5 iM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~----~---~~~Gvit~~Di~~~l~~~~~-------~~~-----~~   65 (120)
T d1pbja3           5 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE----G---VRVGIVTTWDVLEAIAEGDD-------LAE-----VK   65 (120)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET----T---EEEEEEEHHHHHHHHHHTCC-------TTT-----SB
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC----C---cEEEEEEeeecccccccccc-------ccc-----ee
Confidence            48899999999999999999999999999999972    6   89999999999999876421       112     23


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++++       |++++.++++++++.+|+++|.+++++++||+
T Consensus        66 v~~~-------m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~  101 (120)
T d1pbja3          66 VWEV-------MERDLVTISPRATIKEAAEKMVKNVVWRLLVE  101 (120)
T ss_dssp             HHHH-------CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEE
T ss_pred             Eeee-------cccccccccchhHHHHHHHHHHHcCCeEEEEE
Confidence            3333       35799999999999999999999999999986

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.46  E-value=8e-14  Score=114.59  Aligned_cols=96  Identities=16%  Similarity=0.202  Sum_probs=80.0

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccc
Q 016718          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (384)
Q Consensus       258 ~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig  337 (384)
                      .+++++++|++++.+|+++|.+++++++||+|+    |   +++|++|.+|+++++..+..      ...+     .++.
T Consensus        12 ~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~----~---~~vGiit~~Di~~~~~~~~~------~~~~-----~~v~   73 (127)
T d2rc3a1          12 GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD----E---KLVGILTERDFSRKSYLLDK------PVKD-----TQVK   73 (127)
T ss_dssp             CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHGGGSSS------CGGG-----SBGG
T ss_pred             CCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC----C---eEEEEEEccchhhhhhhhcc------cccc-----eeEe
Confidence            368999999999999999999999999999973    5   89999999999987653221      1112     2333


Q ss_pred             ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             ++|++++.++.+++++.+|+++|.+++++++||+
T Consensus        74 -------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  107 (127)
T d2rc3a1          74 -------EIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVL  107 (127)
T ss_dssp             -------GTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE
T ss_pred             -------eeccceeEEeccCccHHHHHHHHHHCCCcEEEEE
Confidence                   3446899999999999999999999999999997

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=2.8e-14  Score=120.98  Aligned_cols=117  Identities=13%  Similarity=0.081  Sum_probs=84.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCc------cc--c
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL------PI--L  327 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~------~~--~  327 (384)
                      +|+++++++.+++++.+|+.+|.+++++++||+|.   +|   +++|+||..|+++.+...........      ..  .
T Consensus         9 ~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~---~~---~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (156)
T d2yzqa1           9 YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EG---NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILE   82 (156)
T ss_dssp             TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TS---CEEEEEEGGGGGGCGGGCC------------------
T ss_pred             HhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC---CC---CceeEEeeeechhhhcccccccccccccchhhhhhhh
Confidence            68999999999999999999999999999999983   46   89999999999876543211100000      00  0


Q ss_pred             c---cccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          328 Q---QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       328 ~---~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .   ..............++++|+++++++.+++++.+|+++|.+++++++||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVv  136 (156)
T d2yzqa1          83 SHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVI  136 (156)
T ss_dssp             --------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             hhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEE
Confidence            0   00000000111113567788999999999999999999999999999997

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=1.2e-13  Score=115.49  Aligned_cols=112  Identities=12%  Similarity=0.131  Sum_probs=83.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|++.++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+||++++....................+.
T Consensus         9 ~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (145)
T d1o50a3           9 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR---DN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   82 (145)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE---TT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             hCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc---Cc---ceeeeeccchhhhhhhcccccccchhHHHHhhhhhcc
Confidence            57899999999999999999999999999999984   36   8999999999999988754332111111111111111


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ..    .++.+| ++++++++++++.+|+++|.+++++++||+
T Consensus        83 ~~----~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVV  120 (145)
T d1o50a3          83 AK----NASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVV  120 (145)
T ss_dssp             SC----BHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             cc----CHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEE
Confidence            10    122333 355789999999999999999999999997

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.43  E-value=1.5e-13  Score=112.87  Aligned_cols=96  Identities=16%  Similarity=0.209  Sum_probs=82.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++.+++++.+|+++|.+++++++||+|+    |   +++|++|..|+++++..+..        .+.++    
T Consensus         9 ~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~----~---~~~Givt~~dl~~~~~~~~~--------~~~~v----   69 (127)
T d2ef7a1           9 YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG----N---KPVGIITERDIVKAIGKGKS--------LETKA----   69 (127)
T ss_dssp             TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHHHTTCC--------TTCBG----
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc----c---chhhhcchhHHHHHHHhhcc--------ccchh----
Confidence            58999999999999999999999999999999983    5   89999999999999875421        12222    


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       +       ++|.+++.++++++++.+|+++|.+++++++||+
T Consensus        70 -~-------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  104 (127)
T d2ef7a1          70 -E-------EFMTASLITIREDSPITGALALMRQFNIRHLPVV  104 (127)
T ss_dssp             -G-------GTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             -h-------hhhhhhccccccccchhHHHHHHHHcCceEEEEE
Confidence             2       2345688999999999999999999999999997

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.41  E-value=2.9e-13  Score=114.56  Aligned_cols=118  Identities=10%  Similarity=0.011  Sum_probs=88.6

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc-
Q 016718          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS-  333 (384)
Q Consensus       255 ~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~-  333 (384)
                      ++|+++++++++++++.+|+++|.+++++++||+|+ .+++   .++|++|..|+++++.........  ...+..... 
T Consensus        15 diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~-~~~~---~lvg~is~~dl~~~l~~~~~~~~~--~~~~~~~~~~   88 (160)
T d2d4za3          15 DIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRR--QPFEEMLTLE   88 (160)
T ss_dssp             SSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSS--SCCCSCCBHH
T ss_pred             HhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc-cccc---cccccchHHHHHHHHhhccccccc--cchhhccccc
Confidence            379999999999999999999999999999999984 2335   799999999999999875432211  000000000 


Q ss_pred             -------ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          334 -------IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       334 -------l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             .........+++.|.++++++.+++|+.+|+++|.+++++++||+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~  140 (160)
T d2d4za3          89 EIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVT  140 (160)
T ss_dssp             HHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEE
T ss_pred             hhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEE
Confidence                   000011112356778999999999999999999999999999996

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.40  E-value=2.7e-13  Score=111.18  Aligned_cols=95  Identities=12%  Similarity=0.104  Sum_probs=76.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      |.+++++++|++++.+|+++|.+++++++||+|+ ..+|   +++|+||.+||+++...+            .+..    
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~-~~~~---~lvGivt~~Di~~~~~~~------------~~~~----   62 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFISDYN------------APIS----   62 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCSCSS------------SBTT----
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEee-ccCC---eEEEEeEHHHHHHhhccC------------Ccee----
Confidence            3456689999999999999999999999999984 2235   899999999997643211            1111    


Q ss_pred             cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             ...++.+++++++++++.+|+++|.+++++++||+
T Consensus        63 -------~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVV   97 (126)
T d1zfja4          63 -------EHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLV   97 (126)
T ss_dssp             -------TSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEE
T ss_pred             -------eeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEE
Confidence                   11235688999999999999999999999999997

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.39  E-value=1.7e-13  Score=114.10  Aligned_cols=104  Identities=9%  Similarity=0.085  Sum_probs=84.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++++++||.+|+++|.+++++++||+|.   ++   +++|++|..|+++++......... ......     +
T Consensus         7 iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~---~~---~~~g~i~~~di~~~~~~~~~~~~~-~~~~~~-----~   74 (141)
T d3ddja1           7 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DN---KVVGIVTVVNAIKQLAKAVDKLDP-DYFYGK-----V   74 (141)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHHHHTCT-HHHHTC-----B
T ss_pred             hCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc---cC---ccccccccccchhhhhcccccccc-ccccCC-----C
Confidence            37889999999999999999999999999999984   35   799999999999998765432110 111222     2


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +       +++|+++++++++++++.+|+++|.+++++++||+
T Consensus        75 v-------~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vv  110 (141)
T d3ddja1          75 V-------KDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLIL  110 (141)
T ss_dssp             H-------HHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             H-------HHHhCcccccccccchhhHHHHHHHHcCCCEEEEE
Confidence            2       33456799999999999999999999999999997

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=5.4e-13  Score=111.16  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=79.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      .++++++++.+++++.+|+++|.+++++++||+|.   +|   +++|+||.+|+++++.......      +...+.+. 
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vG~it~~Di~~~~~~~~~~~------~~~~~~~~-   80 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIYND------LSLSVGEA-   80 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCSBHHHH-
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---eEcceehhhHHHHHHhhccccc------cccchhhh-
Confidence            47899999999999999999999999999999984   46   8999999999999998654321      11111111 


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                          + .....+..+.+++++++++.+|+++|.+++++++||+
T Consensus        81 ----~-~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VV  118 (140)
T d2nyca1          81 ----L-MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVV  118 (140)
T ss_dssp             ----H-HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             ----h-hhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEE
Confidence                0 0112234688999999999999999999999999997

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.37  E-value=2.9e-13  Score=117.22  Aligned_cols=113  Identities=17%  Similarity=0.082  Sum_probs=84.7

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcc---ccccccccc
Q 016718          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP---ILQQPVSSI  334 (384)
Q Consensus       258 ~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~---~~~~~v~~l  334 (384)
                      +++++++.+++++.+|+..|.+++++++||+|+  +.+   +++|++|.+|+++++............   ........+
T Consensus        29 s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~--~~~---~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~~~  103 (179)
T d2ooxe1          29 SFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGL  103 (179)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHHHH
T ss_pred             CCcEEEEECcchHHHHHHHHHHcCCCeEEEEeC--CCC---eeEEEEeechHHHHHHhccccccchhhhhhhhccchhhh
Confidence            468999999999999999999999999999984  335   899999999999998764332111000   000000000


Q ss_pred             cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                        .. .......|+++++++.+++|+.+|+.+|.+++++++||+
T Consensus       104 --~~-~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVv  144 (179)
T d2ooxe1         104 --RE-VERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI  144 (179)
T ss_dssp             --HH-HHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEE
T ss_pred             --cc-cceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEE
Confidence              00 011345678999999999999999999999999999997

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.36  E-value=9.9e-15  Score=119.13  Aligned_cols=99  Identities=13%  Similarity=0.092  Sum_probs=43.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      |.+++++++|+++|.+|+++|.+++++++||+|+...+|   +|+||||.+|+........          +.++.+.. 
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~---~lvGivT~~Di~~~~~~~~----------~~~~~~~~-   67 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEEH----------DRFLEEIM-   67 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTT---CCC--------------------------------CC-
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC---eEeeeeeeeeeeehhcccc----------CceeEEEE-
Confidence            345567999999999999999999999999998422235   8999999999864433221          12222111 


Q ss_pred             cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                               .+..+++++++++++.+|+++|.+++++++||+
T Consensus        68 ---------~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVV  100 (120)
T d1jr1a4          68 ---------TKREDLVVAPAGITLKEANEILQRSKKGKLPIV  100 (120)
T ss_dssp             ---------SBTTTSCCEETTCCHHHHHHHTCSCC---CEEE
T ss_pred             ---------eeccCceEECCCCCHHHHHHHHHHcCccEEEEE
Confidence                     123578999999999999999999999999997

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.32  E-value=1.8e-12  Score=109.68  Aligned_cols=103  Identities=17%  Similarity=0.140  Sum_probs=83.5

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccc
Q 016718          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (384)
Q Consensus       258 ~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig  337 (384)
                      .++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+|+++++......      .++.++.+    
T Consensus        11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~---~~vG~it~~Dl~~~~~~~~~~------~~~~~v~~----   74 (153)
T d2ooxe2          11 WSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EG---TLLNVYESVDVMHLIQDGDYS------NLDLSVGE----   74 (153)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG---GG---BEEEEEEHHHHHHHHGGGCGG------GGGSBHHH----
T ss_pred             CCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc---cc---eEEEEEEeeeeeehhcccccc------ccccchhh----
Confidence            578999999999999999999999999999984   36   899999999999998754321      12222222    


Q ss_pred             ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                       .+ .....+..+++++.+++++.+|+++|.+++++++||+
T Consensus        75 -~~-~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  113 (153)
T d2ooxe2          75 -AL-LKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV  113 (153)
T ss_dssp             -HH-HTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEE
T ss_pred             -he-eeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEE
Confidence             22 1223456788999999999999999999999999997

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.31  E-value=2.7e-12  Score=105.46  Aligned_cols=98  Identities=14%  Similarity=0.130  Sum_probs=81.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++++++++.+|+++|.+++++++||++.+ +.+   +++|++|..|+++++.......        .     .
T Consensus         6 im~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d-~~~---~~iGi~~~~dl~~~~~~~~~~~--------~-----~   68 (131)
T d2riha1           6 LLKRPPVSLPETATIREVATELAKNRVGLAVLTARD-NPK---RPVAVVSERDILRAVAQRLDLD--------G-----P   68 (131)
T ss_dssp             GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEE---EEEEEEEHHHHHHHHHTTCCTT--------S-----B
T ss_pred             hccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEc-CCC---EEEEEEeeeccccccccccccc--------c-----c
Confidence            589999999999999999999999999999999632 224   8999999999999987653221        0     0


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ...        +.++..++.+++++.+|+++|.+++++++||+
T Consensus        69 ~~~--------~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVv  103 (131)
T d2riha1          69 AMP--------IANSPITVLDTDPVHVAAEKMRRHNIRHVVVV  103 (131)
T ss_dssp             SGG--------GCBCCCEEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             ccc--------ccccceeEeeecchHHHHHHHHHCCeEEEEEE
Confidence            111        12477899999999999999999999999997

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.31  E-value=4.8e-13  Score=110.53  Aligned_cols=106  Identities=15%  Similarity=0.034  Sum_probs=83.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|.++++++++++++.+|+++|.+++++++||+|     +   +++|++|..|+++++.........  .......... 
T Consensus         6 lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d-----~---~lvg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-   74 (135)
T d3ddja2           6 LMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-----E---KIEGLLTTRDLLSTVESYCKDSCS--QGDLYHISTT-   74 (135)
T ss_dssp             TCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-----S---SEEEEEEHHHHHGGGTTCC---CC--HHHHHHHHTS-
T ss_pred             EeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEe-----c---ceeceeeccchhhhhccccccchh--hhhccccccC-
Confidence            5788889999999999999999999999999997     3   699999999999987643221110  0001111112 


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                            .++++|+++++++++++++.+|+++|.+++++++||+
T Consensus        75 ------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVv  111 (135)
T d3ddja2          75 ------PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVV  111 (135)
T ss_dssp             ------BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEE
T ss_pred             ------CHHHHhCCccceEEeccccchhhhhhhhcceeEEEEE
Confidence                  3455667899999999999999999999999999997

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.1e-12  Score=111.28  Aligned_cols=112  Identities=18%  Similarity=0.280  Sum_probs=85.8

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccc
Q 016718          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (384)
Q Consensus       258 ~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig  337 (384)
                      ..+++++..++++.+|+++|.++++.++||+|.  +.+   +++|+||.+|+++++...............    .....
T Consensus        22 ~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~--~~~---~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~----~~~~~   92 (159)
T d2v8qe2          22 SSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDS--KKQ---SFVGMLTITDFINILHRYYKSALVQIYELE----EHKIE   92 (159)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHHTCSEEEEEET--TTT---EEEEEEEHHHHHHHHHHHHHHHTTTCCCGG----GCBHH
T ss_pred             CCceEEEcCCCcHHHHHHHHHHcCCCceeEEEC--CCC---cEEEEEEHHHHHHHHHhccccccchhhhhh----hhhcc
Confidence            467899999999999999999999999999984  335   899999999999998765432211111111    01111


Q ss_pred             ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      .+.....+.|.++++++++++++.+|+++|.+++++++||+
T Consensus        93 ~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vv  133 (159)
T d2v8qe2          93 TWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVI  133 (159)
T ss_dssp             HHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEE
T ss_pred             cccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEE
Confidence            12222356778899999999999999999999999999996

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.30  E-value=8.8e-13  Score=108.79  Aligned_cols=99  Identities=9%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccc
Q 016718          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (384)
Q Consensus       258 ~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig  337 (384)
                      .+.++++.++++|.+|+++|.+++++++||+|+   +|   +++|++|.+||+++++.+....       .....+.+++
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~---~~---~~vGiit~~di~~~~~~~~~~~-------~~~~~~~~v~   77 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERIE-------FEKLDQITVE   77 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSBC-------GGGTTTSBHH
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEeec---cc---ccccEEEcchhHHHhhcccccc-------cccccccccc
Confidence            678999999999999999999999999999984   46   8999999999999987543221       0111122333


Q ss_pred             ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                             ++|.+++.++++++++.+|+++|.++++  +||+
T Consensus        78 -------~~m~~~~~~v~~~~~l~~~~~~~~~~~~--l~Vv  109 (132)
T d1yava3          78 -------EVMLTDIPRLHINDPIMKGFGMVINNGF--VCVE  109 (132)
T ss_dssp             -------HHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEE
T ss_pred             -------ccccccccccccchhHHHHHHHHHhCCE--EEEE
Confidence                   3446799999999999999999988754  8876

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=8.2e-13  Score=110.92  Aligned_cols=93  Identities=13%  Similarity=0.136  Sum_probs=78.3

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhcC-----CCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccc
Q 016718          255 RPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  329 (384)
Q Consensus       255 ~~m~~~~itv~~~~~l~~a~~~m~~~~-----i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~  329 (384)
                      .+|+++++++++++++.+|+++|.+++     ++.+||+|+   +|   +++|+++.+|+++..             .+.
T Consensus         5 ~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~dl~~~~-------------~~~   65 (144)
T d2yvxa2           5 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVAD-------------PRT   65 (144)
T ss_dssp             GGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT---TC---BBCCBCBHHHHTTSC-------------TTC
T ss_pred             cccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC---CC---CEecccchhhhhhcc-------------ccc
Confidence            379999999999999999999998884     889999984   46   899999999985421             011


Q ss_pred             ccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       330 ~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                           +       +.++|.++++++++++++.+|+++|.+++++++|||
T Consensus        66 -----~-------v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVV  102 (144)
T d2yvxa2          66 -----R-------VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVV  102 (144)
T ss_dssp             -----B-------STTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEE
T ss_pred             -----c-------hHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEE
Confidence                 1       223456899999999999999999999999999998

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=9.1e-13  Score=107.40  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      +|+++++++++++++.+|+++|.+++++++||+|+   +|   +++|+||.+|+++....             .     .
T Consensus         6 iM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~G~it~~dl~~~~~~-------------~-----~   61 (122)
T d2yzqa2           6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPDE-------------E-----Q   61 (122)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC--------------------------
T ss_pred             ccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec---cc---cchhhhhcchhhhhhcc-------------c-----c
Confidence            37788999999999999999999999999999984   46   89999999999864221             1     1


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ++       ..|.++++++++++++.+|+++|.+++++++||+
T Consensus        62 ~~-------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVv   97 (122)
T d2yzqa2          62 LA-------MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVV   97 (122)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             hh-------hccccceeecchhhHHHHHHHHHHHcCcEEEEEE
Confidence            22       2345788999999999999999999999999997

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=2.7e-12  Score=107.28  Aligned_cols=104  Identities=11%  Similarity=0.105  Sum_probs=82.6

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (384)
Q Consensus       257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (384)
                      +.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+|+++++......      .++.++.+.  
T Consensus        18 ~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~---~~---~~~Gvit~~di~~~l~~~~~~------~~~~~v~~~--   83 (145)
T d2v8qe1          18 TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINLAAEKTYN------NLDVSVTKA--   83 (145)
T ss_dssp             BCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEGGGTGGGGGSSCCC------CCSSBHHHH--
T ss_pred             CCCCceEEcCcCcHHHHHHHHHHcCCCccccccc---CC---ceEEEEEcchhhhhhhccccc------chhhhhhhc--
Confidence            3578999999999999999999999999999984   46   899999999999887543211      122222211  


Q ss_pred             cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                         + .+...|..+++++.+++++.+|+++|.+++++++||+
T Consensus        84 ---~-~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  121 (145)
T d2v8qe1          84 ---L-QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVV  121 (145)
T ss_dssp             ---G-GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             ---c-chhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEE
Confidence               1 1234556789999999999999999999999999997

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.23  E-value=5.6e-12  Score=103.40  Aligned_cols=92  Identities=7%  Similarity=0.056  Sum_probs=77.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcC-----CCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  330 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~-----i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~  330 (384)
                      +|+++++++++++++.+|+..|.+++     ++.+||+|+   +|   +++|+++.++++..      .       .+  
T Consensus         6 iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~~l~~~------~-------~~--   64 (127)
T d2ouxa2           6 IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVN------D-------DD--   64 (127)
T ss_dssp             HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTS------C-------TT--
T ss_pred             hCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec---CC---eEEEEEEeeccccc------c-------cc--
Confidence            58999999999999999999998884     789999984   46   89999999888632      1       01  


Q ss_pred             cccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       331 v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                         .+++       ++|.++++++++++++.+|+++|.+++++++||+
T Consensus        65 ---~~v~-------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVV  102 (127)
T d2ouxa2          65 ---TLIA-------DILNERVISVHVGDDQEDVAQTIRDYDFLAVPVT  102 (127)
T ss_dssp             ---SBHH-------HHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             ---EEhh-------hhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEE
Confidence               1233       3456899999999999999999999999999998

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.6e-11  Score=105.20  Aligned_cols=113  Identities=8%  Similarity=0.030  Sum_probs=81.5

Q ss_pred             eEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCC----ccccc-cccccccc
Q 016718          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LPILQ-QPVSSIQL  336 (384)
Q Consensus       262 itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~----~~~~~-~~v~~l~i  336 (384)
                      +.+.++.++.+|.++|.+++++++||+++ .+++   +++|+||.+||++++..........    ...+. ........
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~-~~~~---~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPY   95 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTT
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeec-CCCC---eEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhc
Confidence            45678889999999999999999999963 2345   8999999999999987542221100    00110 00011111


Q ss_pred             cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      ......++++|.++++++.+++++.+|+++|.+++++++||+
T Consensus        96 ~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~  137 (169)
T d2j9la1          96 TPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVT  137 (169)
T ss_dssp             CCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             cccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEE
Confidence            122223567778899999999999999999999999999985

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=8e-12  Score=101.45  Aligned_cols=92  Identities=11%  Similarity=0.098  Sum_probs=77.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (384)
Q Consensus       256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (384)
                      .|++++.++++++++.+|+++|.+++.+++||+|+   +|   +++|++|.+|++++.             .+.+     
T Consensus         6 ~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~---~~---~~~Gii~~~dl~~~~-------------~~~~-----   61 (121)
T d1vr9a3           6 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLD-------------LDSS-----   61 (121)
T ss_dssp             GCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSC-------------TTSB-----
T ss_pred             hhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC---Cc---eeEEEeehhhhhhhh-------------cccc-----
Confidence            47899999999999999999999999999999983   46   899999999997431             1112     


Q ss_pred             ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP  378 (384)
Q Consensus       336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~  378 (384)
                      +.       +.|.+++.++++++++.+|+++|.+++++++||+
T Consensus        62 v~-------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVv   97 (121)
T d1vr9a3          62 VF-------NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVV   97 (121)
T ss_dssp             SG-------GGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEE
T ss_pred             cc-------ccccCccEEECCCCCHHHHHHHHHhcCceeeeeE
Confidence            22       2334688899999999999999999999999997

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.45  E-value=7e-08  Score=74.77  Aligned_cols=63  Identities=22%  Similarity=0.369  Sum_probs=52.4

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCeeeC
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSG   91 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~~d   91 (384)
                      -++|+ |...+++|.|+++++.    .+|.+.+  +|.|++++.+.+|.+ |+|.|||.|+.||......+
T Consensus        22 g~~FrvwAP~A~~V~l~~~~~~----~~m~~~~--~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~~~   85 (97)
T d2bhua1          22 GTRFRLWTSTARTVAVRVNGTE----HVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLPD   85 (97)
T ss_dssp             CEEEEEECSSCSSEEEEETTEE----EECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCTT
T ss_pred             eEEEEEECCCCCEeEEEeeCCc----cCCEEcc--CEEEEEEcCCCCCCE-EEEEECCeEccCCchhcCCC
Confidence            47787 6678999999997653    5798875  799999999999986 99999999999988765544

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=8.7e-07  Score=70.03  Aligned_cols=67  Identities=25%  Similarity=0.511  Sum_probs=51.2

Q ss_pred             EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEecCCceEEEEEEE---cCEee--cCCCCCee
Q 016718           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYV---DGEWR--HDENQPHV   89 (384)
Q Consensus        22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~L~~G~y~YkFiV---DG~w~--~d~~~p~~   89 (384)
                      -++|+ |...|++|+|+|+||+|... .+|.+.. ..|.|++.+.....-..|||.|   ||+|.  .||-....
T Consensus        21 Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~-~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~DPYA~~~   94 (110)
T d1m7xa1          21 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRK-ESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEA   94 (110)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCT-TTTEEEEEEETCCTTCEEEEEEECTTSCEEEECCTTCSSE
T ss_pred             eEEEEEECCCCCEEEEEEECCCCCCceEEeEEec-CCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcChhhccc
Confidence            37886 88889999999999999865 5887542 3789999998766666788877   77765  57665443

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.78  E-value=3.1e-05  Score=60.26  Aligned_cols=59  Identities=24%  Similarity=0.353  Sum_probs=46.4

Q ss_pred             CceeEEEEEeeC----CCceEEEEecCC---CCCCC--CCCCCCCC--CCCeEEEEEecCCce-EEEEEEE
Q 016718           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEG--CPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        18 ~~~~~v~f~w~~----~~~~V~v~GsF~---~W~~~--~~m~~~~~--~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      ...++|+|.-..    .|++|+|+|+-.   +|++.  ++|.....  ..+.|++++.||+|. ++|||++
T Consensus         3 ~~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKyv~   73 (105)
T d3bmva2           3 GNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK   73 (105)
T ss_dssp             SSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCEEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCCCeEEEEEEE
Confidence            346889998764    489999999954   89864  67876432  246899999999995 9999997

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.76  E-value=5.3e-05  Score=58.96  Aligned_cols=59  Identities=22%  Similarity=0.374  Sum_probs=46.9

Q ss_pred             CceeEEEEEeeC----CCceEEEEecC---CCCCCC--CCCCCCCC--CCCeEEEEEecCCc-eEEEEEEE
Q 016718           18 SILVPVRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        18 ~~~~~v~f~w~~----~~~~V~v~GsF---~~W~~~--~~m~~~~~--~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      +..++|+|....    .|+.|+|+||.   .+|++.  ++|...+.  ....|.+++.+|.| .++|||++
T Consensus         3 ~~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (106)
T d1cyga2           3 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK   73 (106)
T ss_dssp             SCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CCEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccCcCCCCeEEEEEEeCCCCeEEEEEEE
Confidence            457899999853    48999999995   589854  68886532  24689999999999 59999998

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.71  E-value=6.1e-05  Score=58.97  Aligned_cols=57  Identities=23%  Similarity=0.485  Sum_probs=43.4

Q ss_pred             eeEEEEEeeC-----CCceEEEEecCC---CCCCC--CCCCCCCC-----CCCeEEEEEecCCc-eEEEEEEE
Q 016718           20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEP--MPMSPSEG-----CPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        20 ~~~v~f~w~~-----~~~~V~v~GsF~---~W~~~--~~m~~~~~-----~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      ...|+|+...     .|+.|+|+|+..   +|++.  .+|...+.     ..+.|++++.||+| .++|||++
T Consensus         5 ~~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   77 (110)
T d1qhoa2           5 QTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI   77 (110)
T ss_dssp             EEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             ceEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEE
Confidence            4567777753     379999999975   89875  57765421     24579999999998 49999987

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.70  E-value=3.4e-05  Score=60.26  Aligned_cols=60  Identities=25%  Similarity=0.506  Sum_probs=47.4

Q ss_pred             CCceeEEEEEeeC---CCceEEEEecCC---CCCCC--CCCCCCC--CCCCeEEEEEecCCc-eEEEEEEE
Q 016718           17 GSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV   76 (384)
Q Consensus        17 ~~~~~~v~f~w~~---~~~~V~v~GsF~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~G-~y~YkFiV   76 (384)
                      .+..+.|+|....   .|++|+|+|+..   +|++.  ++|...+  ...+.|+.++.||+| .++|||++
T Consensus         3 ~~~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (108)
T d1kula_           3 TPTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             TTTCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTCSSSSCCCBCEECCCSCCEECCEEEE
T ss_pred             CCCEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccccCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            3467889999865   479999999965   89874  5787542  125689999999998 59999998

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.55  E-value=1.5e-05  Score=60.27  Aligned_cols=62  Identities=21%  Similarity=0.240  Sum_probs=47.0

Q ss_pred             EEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC-EeecCCCCCeee
Q 016718           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVS   90 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG-~w~~d~~~p~~~   90 (384)
                      ++|+ |...|++|.|++.+.+|   .+|++.+  +|.|++++. +.+| +.|+|.||| .++.||.....+
T Consensus        11 v~FrvwAP~A~~V~l~~~~~~~---~~m~~~~--~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~~~   75 (90)
T d1eh9a1          11 VIFTLWAPYQKSVKLKVLEKGL---YEMERDE--KGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRYQP   75 (90)
T ss_dssp             EECCEECTTCSCCBCCCSSSCC---CCCCCCT--TSEECCEESSCCSC-CEECEECTTSCEECCTTCSCCT
T ss_pred             EEEEEECCCCCEEEEEeecCCc---ccceeCC--CCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhcCC
Confidence            5777 56679999999875433   5788865  899999985 7788 669999986 457787665443

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.47  E-value=9.8e-05  Score=56.68  Aligned_cols=56  Identities=16%  Similarity=0.231  Sum_probs=41.1

Q ss_pred             eEEEEEeeC----CCceEEEEecCC---CCCCCC--CCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 016718           21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPM--PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (384)
Q Consensus        21 ~~v~f~w~~----~~~~V~v~GsF~---~W~~~~--~m~~~~~~~~~~~~~~~L~~G~-y~YkFiV   76 (384)
                      +.++|.-.+    .|+.|+|+|+..   +|++..  .|.........|++.+.||+|. +||||++
T Consensus         3 v~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~~~~~~~W~~~v~lp~~~~~eYKyvi   68 (99)
T d1vema1           3 VMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI   68 (99)
T ss_dssp             EEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             eeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeeccCCCCCEEEEEEEcCCCcEEEEEEE
Confidence            456666654    489999999976   998752  2221122356899999999995 9999998

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=94.79  E-value=0.017  Score=47.43  Aligned_cols=57  Identities=14%  Similarity=0.230  Sum_probs=43.0

Q ss_pred             eEEEEE-eeCCCceEEEEecCCCCCCC----CCCCCCCCCCCeEEEEEe--------cCCceEEEEEEEcCEe
Q 016718           21 VPVRFI-WPNGGRRVSLSGSFTRWSEP----MPMSPSEGCPAVFQIICR--------LPPGHHQYKFYVDGEW   80 (384)
Q Consensus        21 ~~v~f~-w~~~~~~V~v~GsF~~W~~~----~~m~~~~~~~~~~~~~~~--------L~~G~y~YkFiVDG~w   80 (384)
                      ..++|. |...|++|.|+--.++|...    ++|.+.  .+|+|.+.+.        +.+|.+ |.|.|+|.|
T Consensus        16 ~~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~~--~~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~Gp~   85 (162)
T d1bf2a1          16 ANITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPA--GSGVWAVTVPVSSIKAAGITGAVY-YGYRAWGPN   85 (162)
T ss_dssp             SEEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEEC--STTEEEEEEEHHHHHHTTCCSCCE-EEEEEEBTT
T ss_pred             eeEEEEEECCCCCEEEEEEEcCCCCCcceeEEEcccc--cccEEEEEecccccccccCCCCcE-EEEEEcccc
Confidence            346885 77789999999977777542    467764  3799999986        677765 888899965

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.48  E-value=0.019  Score=44.37  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=35.9

Q ss_pred             EEEE-eeCCCceEEEEecCCCCCC-C-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCE
Q 016718           23 VRFI-WPNGGRRVSLSGSFTRWSE-P-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (384)
Q Consensus        23 v~f~-w~~~~~~V~v~GsF~~W~~-~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~   79 (384)
                      +.|+ |...|++|.|+-...++.. . .+|.... .+|.|++.+. +.+|.+ |+|.|+|.
T Consensus        19 ~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~~-~~GvW~~~i~~~~~G~~-Y~y~v~~~   77 (115)
T d2fhfa1          19 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRDS-ASGAWSWQGGSDLKGAF-YRYAMTVY   77 (115)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEECT-TTCEEEEEECGGGTTCE-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEECCCCCccceeeeeEcC-CCCEEEEEECCCCCCCE-EEEEEEcc
Confidence            5676 6667999998754333332 1 2444332 3689999986 677875 77777764

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=91.52  E-value=1  Score=35.76  Aligned_cols=85  Identities=22%  Similarity=0.322  Sum_probs=57.2

Q ss_pred             CCceeEEEEEeeCC--------CceEEEEecCCCCC----CCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE-c-----
Q 016718           17 GSILVPVRFIWPNG--------GRRVSLSGSFTRWS----EPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV-D-----   77 (384)
Q Consensus        17 ~~~~~~v~f~w~~~--------~~~V~v~GsF~~W~----~~~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiV-D-----   77 (384)
                      +...+.|||-|++.        .+.|+|-++-....    ..-.|++-.+ ..+|..++.||.. +-.|+|+. .     
T Consensus        19 ~~~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl~g-TDVW~~s~~vpad~rgsY~fip~~~~~~~   97 (145)
T d3c8da1          19 NDEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAG-TDVWQWTTQLNANWRGSYCFIPTERDDIF   97 (145)
T ss_dssp             CSSEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECTT-SSEEEEEEEEETTCEEEEEEEEESCCSTT
T ss_pred             CCCCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcCCC-CCeEEEEEEECcccEEEEEEEecCcccCC
Confidence            34678999999872        25699977654333    1134877653 7899999999997 68999984 1     


Q ss_pred             ----C------E-e-------ecCCCCCee-eCCCCCeeeEEEe
Q 016718           78 ----G------E-W-------RHDENQPHV-SGNYGVVNCVYIA  102 (384)
Q Consensus        78 ----G------~-w-------~~d~~~p~~-~d~~G~~nNvi~v  102 (384)
                          +      . |       +.||-||+. .+.-|+-.++++.
T Consensus        98 ~~~~~~~~~~R~~wr~l~~~a~~DPlNp~~~~~~~g~~~S~l~l  141 (145)
T d3c8da1          98 SAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM  141 (145)
T ss_dssp             CCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred             CcCCccHHHHHHHHHHhhhcccCCCCCCCCCcCCCCCccccccc
Confidence                1      0 1       467778753 2556666677776

>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Maltogenic amylase, N-terminal domain N
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=84.44  E-value=0.81  Score=35.02  Aligned_cols=69  Identities=10%  Similarity=0.066  Sum_probs=42.2

Q ss_pred             CCCCCCCCCC-------CceeEEEEEeeC-CCceEEEE-ecCCCCCCC-CCCCCCC-CCC---CeEEEEEecCCceEEEE
Q 016718            8 TGHENSGVVG-------SILVPVRFIWPN-GGRRVSLS-GSFTRWSEP-MPMSPSE-GCP---AVFQIICRLPPGHHQYK   73 (384)
Q Consensus         8 ~~~~~~~~~~-------~~~~~v~f~w~~-~~~~V~v~-GsF~~W~~~-~~m~~~~-~~~---~~~~~~~~L~~G~y~Yk   73 (384)
                      ..||.++..-       ...++++++=+. ..++|.|. |+--.|... .+|.+.. ...   ..|+++++++.++..|+
T Consensus        12 l~Hd~~~~y~~~~~p~~g~~v~IRLRt~~~dv~~V~l~~~d~~~~~~~~~~m~~~~~~~~~~fdywea~i~~~~~~~~Y~   91 (122)
T d1ji1a1          12 LFHDQGPLFDNAPEPTSTQSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYR   91 (122)
T ss_dssp             CBCCSSTTTBSCSSCCTTCCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEE
T ss_pred             eEEcCCCCeecCCCCCCCCEEEEEEEcccCCccEEEEEEecCCCCceeeEEEEEEeccCCCcEEEEEEEEEcCCCeEEEE
Confidence            4677776621       124445554332 45888887 333356432 3565432 112   37899999999999999


Q ss_pred             EEE
Q 016718           74 FYV   76 (384)
Q Consensus        74 FiV   76 (384)
                      |++
T Consensus        92 F~l   94 (122)
T d1ji1a1          92 FQI   94 (122)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998