Citrus Sinensis ID: 016734

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLECTLINRSLYQMINVTQS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHcccccccEEEccccccccccccHHHHHHHHHHHHHHHcccEEEccccccccccccHHHHHHHHHHHHccccccccccccccEEEEEcccccHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHccccccccccccccEEEcccHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHccccEEEEEEEEcccEEEEEEEEEEcccccccccccccccccccEEccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHccHHHHHEEEcccccEEEccccHHHHHHHHHHHHHHHccccEEccccccccccccHHHHHHHHHHHHHHccccccccccccEEEEEEccccccHHHHHccHHcccEEEEccccHHHHHHHHHHHHHcccHHccEEEEEccccccccccEEcccHHHcccccccccHHHHHHHHcccHHHHHHcccccccccccccEEEEEEccccEEEEEEccccccccHHHHcccccEcccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgskkrrrrreerptihpknkysenppdfallaslypsfepfvfysrdgrpridwtdfnatRELTRVLLLHDhglnwwipdgqlcptvpnrsnyIHWIEDLlssniipttsrngdkvkgfdigtganciypllgasllgwsfvgsdmTDVALEWAEknvksnphiselieirkvdnsestpsiqesltgksvqdesnmdmsghmdeeaepsssssfnlpagaqssyhgppvlvGVVRdgeqfdfcicnppffesmeeaglnpktscggtpeemvcsggeRAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFvqgqtcrwglawsfvpparkiisphvAEKKNLSFMLECTLINRSLYQMINVTQS
Flexible Loop (DISEMBL)
mgskkrrrrreerptihpknkysenppDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEknvksnphiselieirkvdnsestpsiqesltgksvqdeSNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTtefvqgqtcrwGLAWSFVPPARKIISPHVAEKKNLSFMLECTLINRSLYQMINVTQS
Low Complexity Region (SEG)
MGSKKrrrrreerPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLECTLINRSLYQMINVTQS
Disordered region (IsUnstruct)
****************************FALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK*******LI**********************************************************GPPVLVGVVRDGEQFDFCICNPPFFES*****************EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLECTLINRSLYQMINV***
Disordered Region (DISOPRED)
*********************YSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSG*************************GPPVLVGVVRDGEQFDFC************************PEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV***************************RS***MI*****
Disordered Region (DISEMBL)
*************PTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD******************************************LPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLECTLINRSLYQMINVTQS
Disordered Region (DISPRO)
*****************PK**YSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLECTLINRSLYQMINVT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLECTLINRSLYQMINVTQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q6DC64	471	Methyltransferase-like pr	yes	no	0.716	0.583	0.382	9e-61
Q554C9	568	Methyltransferase-like pr	yes	no	0.820	0.554	0.399	4e-60
Q6GR37	547	Methyltransferase-like pr	N/A	no	0.755	0.530	0.380	2e-59
Q86W50	562	Methyltransferase-like pr	yes	no	0.716	0.489	0.386	3e-58
Q9CQG2	553	Methyltransferase-like pr	yes	no	0.716	0.497	0.383	5e-58
Q5ZIA0	558	Methyltransferase-like pr	yes	no	0.708	0.487	0.377	2e-56
A6W2M9	327	Ribosomal RNA large subun	yes	no	0.757	0.889	0.318	1e-46
Q4ZXI1	328	Ribosomal RNA large subun	yes	no	0.734	0.859	0.319	3e-45
Q48MF3	328	Ribosomal RNA large subun	yes	no	0.742	0.868	0.317	1e-44
Q61J97	481	Methyltransferase-like pr	N/A	no	0.716	0.571	0.331	3e-44

>sp|Q6DC64|MET16_DANRE Methyltransferase-like protein 16 OS=Danio rerio GN=mettl16 PE=2 SV=1

 Score =  234 bits (597), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 135/353 (38%), Positives = 190/353 (53%), Gaps = 78/353 (22%)

Query: 15  TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
           ++HP+N+Y + PPDF  LAS YP F+  V  +  GR  +++ D  A R LT  LL  D G
Sbjct: 6   SMHPRNRYKDKPPDFVYLASKYPEFQKHVQTTLTGRVTLNFKDPEAVRALTCTLLKEDFG 65

Query: 75  LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
           L   IP  +L PTVP R NYIHW+EDL+           G+  +G DIGTGA+CIYPLLG
Sbjct: 66  LTIEIPLERLIPTVPLRLNYIHWVEDLIGG--------QGNPQRGIDIGTGASCIYPLLG 117

Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
           A++ GW F+ +++ D+   +A+KNV+ N H++ELI++ KV         Q++L   ++++
Sbjct: 118 ATMNGWFFLATEVDDICFNYAKKNVEQN-HLAELIKVVKVP--------QKTLLMDALKE 168

Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
           ES +                                           +DFC+CNPPFF +
Sbjct: 169 ESIV-------------------------------------------YDFCMCNPPFFAN 185

Query: 255 MEEA-GLNPKTS---------CGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMV 304
             EA G+N + S          GG   E++  GGE  F+ R+I DS+ LK+  RWY+ M+
Sbjct: 186 QLEAKGVNSRNSRRPPPSSINTGGV-TEIMAEGGELEFVKRVIHDSLQLKKRLRWYSCML 244

Query: 305 GRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV-------PPARK 350
           G+K +L  L  +LRK GV  V  TEF QG+T RW LAWSF        PP +K
Sbjct: 245 GKKCSLAPLKDELRKQGVAKVTHTEFCQGRTMRWALAWSFYDDVPVPSPPCKK 297

Probable methyltransferase.
Danio rerio (taxid: 7955)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q554C9|MET16_DICDI Methyltransferase-like protein 16 homolog OS=Dictyostelium discoideum GN=DDB_G0275203 PE=3 SV=1

 Score =  232 bits (591), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 143/358 (39%), Positives = 199/358 (55%), Gaps = 43/358 (12%)

Query: 3   SKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATR 62
           +KK+R+R  +  ++H  N Y  NPP+F LLAS YP+F+ ++    +    IDW D NAT+
Sbjct: 31  TKKKRKRSND--SMHINNFYRYNPPNFKLLASKYPTFDKYIINKTEKIYNIDWKDSNATK 88

Query: 63  ELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSS-NIIPTTSRNGDKV-KGF 120
           ELTRVLL HD GL   +PD  LCPT+  R NY++WI D L +  II   + N +K+ KG 
Sbjct: 89  ELTRVLLDHDFGLRIELPDNYLCPTLTLRINYLYWISDQLKNLKIILNDNDNDNKIIKGI 148

Query: 121 DIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSES 179
           DIGTG +CI+PLLGA L   WSF+G D+ D  LE+A+ N+  N                 
Sbjct: 149 DIGTGTSCIFPLLGAKLFNNWSFIGIDIDDKVLEYAQNNITIN----------------- 191

Query: 180 TPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDG 239
             S+   +T    ++E N D+   +    E   S++FN      SS            D 
Sbjct: 192 --SLNSKIT--LFKNEKNSDILLKLLNYKE--GSNTFN------SSNDDHQDNHDDDDDD 239

Query: 240 EQF--DFCICNPPFFESMEEAGLNPKTS----CGGTPEEMVCSGGERAFITRIIEDSVAL 293
           E++  DFC+CNPPFF+ + E   N   +    C G+  EMV  GGE  F+ RII++S  L
Sbjct: 240 EEYFADFCLCNPPFFKDLNENNNNKNNNPKSNCTGSVNEMVTDGGEFEFVKRIIKESFQL 299

Query: 294 KQTFRWYTSMVGRKSNLKFLISKLRK---VGVTIVKTTEFVQGQTCRWGLAWSFVPPA 348
           K   R+YT+M+GRK NL  LI+ L K   +    ++TTE VQG T RW L+W F+  +
Sbjct: 300 KCKIRFYTTMIGRKVNLNPLINILIKQYYLPKNQIQTTELVQGNTSRWVLSWYFLNKS 357

Probable methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6GR37|MET16_XENLA Methyltransferase-like protein 16 OS=Xenopus laevis GN=mettl16 PE=2 SV=1

 Score =  229 bits (585), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 196/357 (54%), Gaps = 67/357 (18%)

Query: 15  TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
           ++HP+N+Y + PPDFA LAS YP F+  V  +  GR  +++ D  A R LT  LL  D G
Sbjct: 6   SMHPRNRYKDKPPDFAYLASKYPEFKQHVNVNLAGRVSLNFKDPCAVRALTCTLLKEDFG 65

Query: 75  LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
           L   IP  +L PTVP R NYIHW+EDL++ +    T+      +G DIGTGA+CIYPLLG
Sbjct: 66  LTIDIPLERLIPTVPLRLNYIHWVEDLINYHDSDKTALR----RGIDIGTGASCIYPLLG 121

Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
           A+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV         Q++L   ++++
Sbjct: 122 ATLNGWYFLATEVDDICYNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDALKE 172

Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
           ES +                                           +DFC+CNPPFF +
Sbjct: 173 ESEI------------------------------------------IYDFCMCNPPFFAN 190

Query: 255 MEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG 305
             EA G+N        P +   G   E++  GGE  F+ RII DS+ LK+  RWY+ M+G
Sbjct: 191 QLEAQGVNSRNPHRSPPSSVNTGGITEIMAEGGELEFVKRIIHDSLKLKKRLRWYSCMLG 250

Query: 306 RKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNL 362
           +K +L  L  +LR  GV  V  TEF QG+T RW LAWSF     ++I P+  +K+ L
Sbjct: 251 KKCSLAPLKEELRLQGVPKVAHTEFYQGRTMRWALAWSFY---EEVIIPNPPKKRKL 304

Probable methyltransferase.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q86W50|MET16_HUMAN Methyltransferase-like protein 16 OS=Homo sapiens GN=METTL16 PE=1 SV=2

 Score =  226 bits (575), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 185/339 (54%), Gaps = 64/339 (18%)

Query: 15  TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
           ++H +N+Y + PPDFA LAS YP F+  V  + +GR  +++ D  A R LT  LL  D G
Sbjct: 6   SMHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query: 75  LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
           L+  IP  +L PTVP R NYIHW+EDL+        S      +G DIGTGA+CIYPLLG
Sbjct: 66  LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ----DSDKSTLRRGIDIGTGASCIYPLLG 121

Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
           A+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV         Q++L   ++++
Sbjct: 122 ATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDALKE 172

Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
           ES +                                           +DFC+CNPPFF +
Sbjct: 173 ESEII------------------------------------------YDFCMCNPPFFAN 190

Query: 255 MEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG 305
             EA G+N        P +   G   E++  GGE  F+ RII DS+ LK+  RWY+ M+G
Sbjct: 191 QLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG 250

Query: 306 RKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
           +K +L  L  +LR  GV  V  TEF QG+T RW LAWSF
Sbjct: 251 KKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWSF 289

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9CQG2|MET16_MOUSE Methyltransferase-like protein 16 OS=Mus musculus GN=Mettl16 PE=1 SV=1

 Score =  225 bits (573), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 130/339 (38%), Positives = 186/339 (54%), Gaps = 64/339 (18%)

Query: 15  TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
           ++H +N+Y + PPDFA LAS YP F+  +  + +GR  +++ D  A R LT  LL  D G
Sbjct: 6   SMHARNRYKDKPPDFAYLASKYPDFKQHIQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query: 75  LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
           L+  IP  +L PTVP R NYIHW+EDL+       T+      +G DIGTGA+CIYPLLG
Sbjct: 66  LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKTTLR----RGIDIGTGASCIYPLLG 121

Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
           A+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV         Q++L   ++++
Sbjct: 122 ATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDALKE 172

Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
           ES +                                           +DFC+CNPPFF +
Sbjct: 173 ESEI------------------------------------------VYDFCMCNPPFFAN 190

Query: 255 MEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG 305
             EA G+N        P +   G   E++  GGE  F+ RII DS+ LK+  RWY+ M+G
Sbjct: 191 QLEAKGVNSRNSRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG 250

Query: 306 RKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
           +K +L  L  +LR  GV  V  TEF QG+T RW LAWSF
Sbjct: 251 KKCSLAPLKEELRIQGVPKVTFTEFCQGRTMRWALAWSF 289

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5ZIA0|MET16_CHICK Methyltransferase-like protein 16 OS=Gallus gallus GN=METTL16 PE=2 SV=1

 Score =  220 bits (560), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 184/342 (53%), Gaps = 70/342 (20%)

Query: 15  TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
           ++H +N+Y + PPDFA LA  YP F   V  +  GR  +++ D  A R LT  LL  D G
Sbjct: 6   SMHARNRYKDKPPDFAYLAGKYPEFRQHVQTTLAGRVSLNFKDPEAVRALTCTLLKEDFG 65

Query: 75  LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDK---VKGFDIGTGANCIYP 131
           L   IP  +L PTVP R NYIHW+EDL+         ++ DK    +G DIGTGA+CIYP
Sbjct: 66  LTIDIPLERLIPTVPLRLNYIHWVEDLIG-------HQDADKRVLRRGIDIGTGASCIYP 118

Query: 132 LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKS 191
           LLG++L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV         Q++L   +
Sbjct: 119 LLGSTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDA 169

Query: 192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251
           +++ES +                                           +DFC+CNPPF
Sbjct: 170 LKEESEI------------------------------------------IYDFCMCNPPF 187

Query: 252 FESMEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302
           F +  EA G+N        P +   G   E++  GGE  F+ RII DS+ LK+  RWY+ 
Sbjct: 188 FANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSC 247

Query: 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
           M+G+K +L  L  +L+  GV  V  TEF QG+T RW LAWSF
Sbjct: 248 MLGKKCSLAPLKEELKIQGVPKVTHTEFCQGRTMRWALAWSF 289

Probable methyltransferase.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6W2M9|RLMF_MARMS Ribosomal RNA large subunit methyltransferase F OS=Marinomonas sp. (strain MWYL1) GN=rlmF PE=3 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 175/364 (48%), Gaps = 73/364 (20%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           + SK  + +R  +  +HP+N +     DFALLA   P    F+  ++ G   +D+ + NA
Sbjct: 3   LKSKNTKSKRTNKLELHPRNPHRARY-DFALLADSCPELSGFIQLNQYGNESVDFANPNA 61

Query: 61  TRELTRVLLLHDHGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKG 119
            + L R LL H +G+ +W IP G LCP +P R++YIH++ DLL+++ +    R G  VK 
Sbjct: 62  VKTLNRALLNHFYGVAFWDIPPGYLCPPIPGRADYIHYLADLLAASNLGVIPR-GKGVKV 120

Query: 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSES 179
            D+G GANC+YP++G    GW FVGSD+  VA+   +  VKSNP +   I  R       
Sbjct: 121 LDVGVGANCVYPIIGHQEYGWQFVGSDVNPVAVATCDTIVKSNPCLKGAISAR------- 173

Query: 180 TPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDG 239
                                        +  S+  F+                GV ++ 
Sbjct: 174 ----------------------------LQTQSAKLFD----------------GVWKEK 189

Query: 240 EQFDFCICNPPFFESMEEAGLN------------------PKTSCGGTPEEMVCSGGERA 281
           ++FD  +CNPPF  S E A ++                  P  + GGT  E+ C GGE  
Sbjct: 190 DRFDLTLCNPPFHTS-ESAMIDESQRKWRGVKGKKTTTQKPVLNFGGTAAELWCDGGEAG 248

Query: 282 FITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA 341
           F++R++++SV       W+TS+V R+ NL  +   L+ VG   VKT E  QGQ     +A
Sbjct: 249 FVSRMVKESVQYADRCFWFTSLVARQGNLDAIYRTLKDVGARQVKTIEMAQGQKISRFVA 308

Query: 342 WSFV 345
           WSF+
Sbjct: 309 WSFL 312

Specifically methylates the adenine in position 1618 of 23S rRNA.

Marinomonas sp. (strain MWYL1) (taxid: 400668)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 1

>sp|Q4ZXI1|RLMF_PSEU2 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rlmF PE=3 SV=1

 Score =  182 bits (463), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 170/360 (47%), Gaps = 78/360 (21%)

Query: 12  ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
           E+ T+HP+N++ +   DFA L    P    FV  +  G+  ID+ +  A R   R LL  
Sbjct: 23  EKATLHPRNRH-QGQYDFAKLIKSSPELAAFVILNPYGKESIDFANPQAVRVFNRALLKA 81

Query: 72  DHGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSN---IIPTTSRNGDKVKGFDIGTGAN 127
            +G+  W IP   LCP +P R++Y+H++ DLL+ +   +IP     G  +K  DIGTGAN
Sbjct: 82  FYGIAHWDIPADYLCPPIPGRADYLHFLADLLAEDNEGVIP----RGASIKALDIGTGAN 137

Query: 128 CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESL 187
           CIYPLLG S  GW FVGSD+   A+  A   VK+N  +S+ I +R+  N           
Sbjct: 138 CIYPLLGHSDYGWQFVGSDIDSTAIAAATTIVKAN-GLSKAISVRQQANRRQ-------- 188

Query: 188 TGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247
                                                      +L+G++   E+F   +C
Sbjct: 189 -------------------------------------------ILLGLLDSSERFHVSLC 205

Query: 248 NPPFFESMEEAGLN-----------------PKTSCGGTPEEMVCSGGERAFITRIIEDS 290
           NPPF  S+EEA                    P  + GG  +E+ C GGE  FIT++I++S
Sbjct: 206 NPPFHASLEEAQRGSQRKWRALGKADPKRKLPVLNFGGQSQELWCDGGEIGFITQLIQES 265

Query: 291 VALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350
             L     W++++V + SNL  + S L+K G   VK  E  QGQ     +AW+F+  A++
Sbjct: 266 ALLPSQVAWFSTLVSKASNLPPIHSALKKAGALEVKVVEMGQGQKQSRFVAWTFLDKAQR 325

Specifically methylates the adenine in position 1618 of 23S rRNA.

Pseudomonas syringae pv. syringae (strain B728a) (taxid: 205918)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 1

>sp|Q48MF3|RLMF_PSE14 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rlmF PE=3 SV=2

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 176/365 (48%), Gaps = 80/365 (21%)

Query: 12  ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
           E+ T+HP+N++ +   DFA L    P    FV  +  G+  ID+ D  A R   R LL  
Sbjct: 23  EKATLHPRNRH-QGHYDFAKLIKSSPELAAFVILNPYGKESIDFADPQAVRVFNRALLKA 81

Query: 72  DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLSSN---IIPTTSRNGDKVKGFDIGTGAN 127
            +G+ +W IP   LCP +P R++Y+H++ DLL+ +   +IP     G  +K  DIGTGAN
Sbjct: 82  FYGIAHWDIPADYLCPPIPGRADYLHFLADLLAEDNEGVIP----RGASIKALDIGTGAN 137

Query: 128 CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESL 187
           CIYPLLG S  GW FVGSD+   A+  A   +K+N  +S+ I +R+ DN +         
Sbjct: 138 CIYPLLGHSDYGWQFVGSDIDSTAIAAATTIIKAN-GLSKAISVRQQDNRKQ-------- 188

Query: 188 TGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247
                                                      +L+G++   E+F   +C
Sbjct: 189 -------------------------------------------ILLGLLDSSERFHVSLC 205

Query: 248 NPPFFESMEEAGLN-----------------PKTSCGGTPEEMVCSGGERAFITRIIEDS 290
           NPPF  S++EA                    P  + GG  +E+ C GGE  F+TR+I++S
Sbjct: 206 NPPFHASLDEAQRGSQRKWRALGKADPKRKLPVLNFGGQSQELWCEGGEIGFVTRLIQES 265

Query: 291 VALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350
             L     W++++V + SNL  + + L+K G   VK  E  QGQ     +AW+F+  A++
Sbjct: 266 ATLPSQVVWFSTLVSKASNLPPIQNALKKAGALEVKVIEMGQGQKQSRFVAWTFLDKAQR 325

Query: 351 IISPH 355
             +PH
Sbjct: 326 --TPH 328

Specifically methylates the adenine in position 1618 of 23S rRNA.

Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) (taxid: 264730)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 1

>sp|Q61J97|MET16_CAEBR Methyltransferase-like protein 16 homolog OS=Caenorhabditis briggsae GN=CBG09879 PE=3 SV=1

 Score =  179 bits (454), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 168/353 (47%), Gaps = 78/353 (22%)

Query: 16  IHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGL 75
           +HP+N Y + PPDF  LA  YP F  F  Y  +G+  +D+    A R LT+ LL  D  L
Sbjct: 7   MHPRNPYRDKPPDFKALAIEYPEFRKFCQYVSNGKVTLDFRKDAAVRCLTQTLLKKDFSL 66

Query: 76  NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGA 135
           N  +P G L P VP + NY   I+D+L +N I +       V G DIGTG +CI+ L+GA
Sbjct: 67  NVNLPAGHLVPRVPQKLNYCLLIDDILQANSITSN------VVGIDIGTGTSCIHALIGA 120

Query: 136 SLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195
              GW FV +D  + +++ A +NV  N  + + I +  V+     P+++  L        
Sbjct: 121 RHFGWKFVATDGDENSVQVAHENVARN-EMGDSICVVHVN-----PAVKTVL-------- 166

Query: 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES- 254
             MD+   M     P S                            +F FC+CNPPFFE  
Sbjct: 167 --MDVINSM-----PDS----------------------------EFSFCMCNPPFFEKS 191

Query: 255 ------MEEAGLN---------------PKTSCGGTPEEMVCSGGERAFITRIIEDSVAL 293
                  EE  L+               P +    +  E+   GGE AF+ RII+DSV L
Sbjct: 192 DKEERFCEEPSLSNETYSNNFDFDMRSAPHSETIASSAELYVEGGEVAFVNRIIDDSVCL 251

Query: 294 KQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTE-FVQGQTCRWGLAWSFV 345
           +   ++YT+M+GRKS+LK L+ +L + G  +        QG+T RW LAW+F 
Sbjct: 252 RDRIKFYTTMIGRKSSLKPLLQRLERFGENVKFLVHPLNQGKTKRWMLAWTFA 304

Probable methyltransferase.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
225427967	497	PREDICTED: methyltransferase-like protei	0.986	0.762	0.760	1e-171
224080596	443	predicted protein [Populus trichocarpa]	0.890	0.772	0.760	1e-163
255574754	473	conserved hypothetical protein [Ricinus	0.960	0.780	0.729	1e-160
449454349	485	PREDICTED: methyltransferase-like protei	0.966	0.764	0.701	1e-154
449510434	485	PREDICTED: methyltransferase-like protei	0.973	0.771	0.700	1e-154
334184347	513	ribosomal RNA large subunit methyltransf	0.945	0.707	0.666	1e-143
42569208	483	ribosomal RNA large subunit methyltransf	0.945	0.751	0.666	1e-143
79322590	380	ribosomal RNA large subunit methyltransf	0.945	0.955	0.666	1e-142
52354261	378	hypothetical protein AT2G21070 [Arabidop	0.945	0.960	0.669	1e-142
297821301	477	hypothetical protein ARALYDRAFT_480956 [	0.942	0.758	0.672	1e-140

>gi|225427967|ref|XP_002277572.1| PREDICTED: methyltransferase-like protein 16-like [Vitis vinifera]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 292/384 (76%), Positives = 327/384 (85%), Gaps = 5/384 (1%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           MG KKRRR   ERP+IHP+NKYSENPPDFALLASLYPSF+PFVF +R GRP IDWTDFNA
Sbjct: 1   MGGKKRRRV--ERPSIHPRNKYSENPPDFALLASLYPSFKPFVFLNRAGRPTIDWTDFNA 58

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSS+IIP TS +G+ V+GF
Sbjct: 59  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSDIIPKTSTDGNNVRGF 118

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASLLGWSFVG+D+TDVALEWAEKNVKSNPHISELIEIRKV++  ST
Sbjct: 119 DIGTGANCIYPLLGASLLGWSFVGTDVTDVALEWAEKNVKSNPHISELIEIRKVESDGST 178

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGE 240
           PS +    G+S   E   D+SG    + EP  S S +   G+  SYHGPPVL+G+++DGE
Sbjct: 179 PSGEGLHIGESFIVEGEKDLSGINAGDTEPLPSCSLDADLGSNKSYHGPPVLLGILKDGE 238

Query: 241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY 300
             DFC+CNPPFFE+MEEAGLNPKTSCGGTPEEMVC GGE+AFITRII+DSV LKQ+FRWY
Sbjct: 239 NLDFCMCNPPFFETMEEAGLNPKTSCGGTPEEMVCPGGEKAFITRIIDDSVILKQSFRWY 298

Query: 301 TSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKK 360
           TSMVG+K+NLK L+SKLR VGVTIVKTTEFVQGQTCRWG+AWSFVP ARK+I PHVA+K 
Sbjct: 299 TSMVGKKTNLKILVSKLRNVGVTIVKTTEFVQGQTCRWGIAWSFVPSARKLILPHVAKKN 358

Query: 361 NLSFMLECTLINRSLYQMINVTQS 384
           N SFMLE     +  +  INV QS
Sbjct: 359 NQSFMLEGL---QRQFSAINVLQS 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080596|ref|XP_002306173.1| predicted protein [Populus trichocarpa] gi|222849137|gb|EEE86684.1| predicted protein [Populus trichocarpa]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 277/364 (76%), Positives = 310/364 (85%), Gaps = 22/364 (6%)

Query: 4   KKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRE 63
           KK +R+R ERPTIHPKNKYS+NPPDF++LASLYPS +PFVFYSRDGRPRIDWTD+N+TRE
Sbjct: 1   KKNKRKRPERPTIHPKNKYSDNPPDFSVLASLYPSLKPFVFYSRDGRPRIDWTDYNSTRE 60

Query: 64  LTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIG 123
           LTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSS+IIP  + N D V+GFDIG
Sbjct: 61  LTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSDIIPKNNNNDDIVRGFDIG 120

Query: 124 TGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSI 183
           TGANCIYPLLGASLLGW+FVGSD+TDVA+EWAEKNVK N HISELIEIRKV + +S  SI
Sbjct: 121 TGANCIYPLLGASLLGWTFVGSDVTDVAVEWAEKNVKCNQHISELIEIRKVTDCQSAISI 180

Query: 184 QESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFD 243
           ++S  G+SV  E+ MD                     G  + Y GPP+L+GVVRDGE+FD
Sbjct: 181 EDSNCGESVNCENKMD---------------------GNATKYSGPPLLLGVVRDGEKFD 219

Query: 244 FCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303
           FC+CNPPFFE+MEEAGLNPKTSCGGTPEEMVC GGE+AFIT IIEDSV LK++FRW+TSM
Sbjct: 220 FCMCNPPFFETMEEAGLNPKTSCGGTPEEMVCPGGEKAFITCIIEDSVVLKESFRWFTSM 279

Query: 304 VGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLS 363
           VGRK NLKFL SKLR+VGVTIVKTTEFVQGQTCRWGLAWSFVPP RKIISP V +K +LS
Sbjct: 280 VGRKVNLKFLTSKLREVGVTIVKTTEFVQGQTCRWGLAWSFVPPVRKIISPLV-QKNSLS 338

Query: 364 FMLE 367
           F LE
Sbjct: 339 FTLE 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574754|ref|XP_002528285.1| conserved hypothetical protein [Ricinus communis] gi|223532322|gb|EEF34123.1| conserved hypothetical protein [Ricinus communis]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 280/384 (72%), Positives = 324/384 (84%), Gaps = 15/384 (3%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           MGS  R +RR+ R TIHP+NKY+++PPDFALLASLYPSFEPF+FYSRDGRPRIDWTDFN+
Sbjct: 1   MGSNNRNKRRK-RATIHPRNKYADSPPDFALLASLYPSFEPFIFYSRDGRPRIDWTDFNS 59

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTR+LLLHDH LNWWIPDGQLCPTVPNRSNYIHW+EDLLSS+IIP T+ NGD VKGF
Sbjct: 60  TRELTRLLLLHDHSLNWWIPDGQLCPTVPNRSNYIHWVEDLLSSDIIPKTNINGDTVKGF 119

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASLLGWSFVGSD+TDVA+EWAE+NVK+NPH+SELIE+RKV N + T
Sbjct: 120 DIGTGANCIYPLLGASLLGWSFVGSDVTDVAVEWAERNVKNNPHVSELIEVRKVTNCQGT 179

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGE 240
            S+++S   +S+  ES MD  G + E+              A   YHGPPVLVGV+++ E
Sbjct: 180 LSVEDSRNVESISCESKMDADGSVIEKL-----------VDANKKYHGPPVLVGVIKNDE 228

Query: 241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY 300
           +F+FC+CNPPFFESMEEAGLNPKTSCGGTPEEMVC GGE+AFI RIIEDSV LK++FRW+
Sbjct: 229 KFEFCMCNPPFFESMEEAGLNPKTSCGGTPEEMVCPGGEKAFIARIIEDSVILKESFRWF 288

Query: 301 TSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKK 360
           TSMVGRK+NLKFL S+LR+VGVTIVKTTEFVQGQTCRWGLAWSFVPPARKII PHV +K 
Sbjct: 289 TSMVGRKTNLKFLTSRLREVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIILPHVDDKS 348

Query: 361 NLSFMLECTLINRSLYQMINVTQS 384
            + FMLE     +  +  I+V QS
Sbjct: 349 IIPFMLEGL---QRQFSAIDVLQS 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454349|ref|XP_004144918.1| PREDICTED: methyltransferase-like protein 16 homolog [Cucumis sativus]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/378 (70%), Positives = 308/378 (81%), Gaps = 7/378 (1%)

Query: 5   KRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATREL 64
           +++R+  E  TIHP+NKY+ENPPDFALLASLYPSF+PFV  S   RPRIDWTDFNATREL
Sbjct: 3   RKKRKTREAATIHPRNKYAENPPDFALLASLYPSFQPFV--SLHPRPRIDWTDFNATREL 60

Query: 65  TRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGT 124
           TRVLLLHDH L+WWIPDGQLCPTVPNRSNYIHW+EDLLSS+++   + +  +V+GFDIGT
Sbjct: 61  TRVLLLHDHALHWWIPDGQLCPTVPNRSNYIHWLEDLLSSDVVAKKNSDCGRVRGFDIGT 120

Query: 125 GANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQ 184
           GANCIYPLLGASLLGWSFVG+D+TDVALEWAE+NV SNPHISELIEIRKVD++    S +
Sbjct: 121 GANCIYPLLGASLLGWSFVGTDVTDVALEWAERNVTSNPHISELIEIRKVDDTSDDLSTE 180

Query: 185 ESLTGKSVQDESNMDMSGHMD-EEAEPSSSSSFNLPA-GAQSSYHGPPVLVGVVRDGEQF 242
                 SV  +S   +   MD  E  P   S  +  A   ++ YHGPP+L+GVV+DGE+F
Sbjct: 181 ---LHDSVAVDSECKIFNEMDGREIGPPLPSFLSKEAIHLETQYHGPPILLGVVKDGERF 237

Query: 243 DFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302
           DFC+CNPPFFESM+EAGLNPKTSCGGTP+EMVC GGERAFI+R+IEDS+ LKQTFRWYTS
Sbjct: 238 DFCMCNPPFFESMDEAGLNPKTSCGGTPQEMVCPGGERAFISRMIEDSIVLKQTFRWYTS 297

Query: 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNL 362
           M+G+KSNL FLISKL KVGVT+VKTTEFVQGQTCRWGLAWSF+  ARKIISPHV  K  L
Sbjct: 298 MIGKKSNLSFLISKLWKVGVTVVKTTEFVQGQTCRWGLAWSFMSTARKIISPHVTNKSIL 357

Query: 363 SFMLECTLINRSLYQMIN 380
           SFMLE  L   S   ++ 
Sbjct: 358 SFMLEGLLSQVSAMSILQ 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510434|ref|XP_004163663.1| PREDICTED: methyltransferase-like protein 16 homolog [Cucumis sativus]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/381 (70%), Positives = 308/381 (80%), Gaps = 7/381 (1%)

Query: 5   KRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATREL 64
           +++R+  E  TIHP+NKY+ENPPDFALLASLYPSF+PFV  S   RPRIDWTDFNATREL
Sbjct: 3   RKKRKTREAATIHPRNKYAENPPDFALLASLYPSFQPFV--SLHPRPRIDWTDFNATREL 60

Query: 65  TRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGT 124
           TRVLLLHDH L+WWIPDGQLCPTVPNRSNYIHW+EDLLSS+I+   + +  +V+GFDIGT
Sbjct: 61  TRVLLLHDHALHWWIPDGQLCPTVPNRSNYIHWLEDLLSSDIVAKKNSDCGRVRGFDIGT 120

Query: 125 GANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQ 184
           GANCIYPLLGASLLGWSFVG+D+TDVALEWAE+NV SNPHISELIEIRKVD++    S +
Sbjct: 121 GANCIYPLLGASLLGWSFVGTDVTDVALEWAERNVTSNPHISELIEIRKVDDTSDDLSTE 180

Query: 185 ESLTGKSVQDESNMDMSGHMD-EEAEPSSSSSFNLPA-GAQSSYHGPPVLVGVVRDGEQF 242
                 SV  +S   +   MD  E  P   S  +  A   ++ YHGPP+L+GVV+DGE F
Sbjct: 181 ---LHDSVAVDSECKIFNEMDGREIGPPLPSFLSKEAIHLETRYHGPPILLGVVKDGEGF 237

Query: 243 DFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302
           DFC+CNPPFFESM+EAGLNPKTSCGGTP+EMVC GGERAFI+R+IEDS+ LKQTFRWYTS
Sbjct: 238 DFCMCNPPFFESMDEAGLNPKTSCGGTPQEMVCPGGERAFISRMIEDSIVLKQTFRWYTS 297

Query: 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNL 362
           M+G+KSNL FLISKL KVGVTIVKTTEFVQGQTCRWGLAWSF+  ARKIISPHV  K  L
Sbjct: 298 MIGKKSNLSFLISKLWKVGVTIVKTTEFVQGQTCRWGLAWSFMSTARKIISPHVTNKSIL 357

Query: 363 SFMLECTLINRSLYQMINVTQ 383
           SFMLE  L   S   ++   +
Sbjct: 358 SFMLEGLLSQVSAMSILQSVE 378

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184347|ref|NP_001189567.1| ribosomal RNA large subunit methyltransferase F [Arabidopsis thaliana] gi|330252026|gb|AEC07120.1| ribosomal RNA large subunit methyltransferase F [Arabidopsis thaliana]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/390 (66%), Positives = 299/390 (76%), Gaps = 27/390 (6%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           M S K+R R E   T  P++KYS+NPPDFA LASLYPSF+PFVF+S   R RIDWTD+NA
Sbjct: 1   MRSGKKRARSEPGSTKQPRSKYSDNPPDFASLASLYPSFKPFVFFS-GSRARIDWTDYNA 59

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTRVLLLHDHG+NWWIPDGQLCPTVPNRSNYIHWI DLLSS II +   +G KVKGF
Sbjct: 60  TRELTRVLLLHDHGVNWWIPDGQLCPTVPNRSNYIHWINDLLSSGIIQSLGGDGSKVKGF 119

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASL GWSFVGSD T VALEWAEKNV+SNPH S+LIEIR   +S+  
Sbjct: 120 DIGTGANCIYPLLGASLFGWSFVGSDFTVVALEWAEKNVQSNPHFSDLIEIR---DSKVP 176

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG------PPVLVG 234
           P         SV +  N +    + EEAE        + A  +S YH       P VL+G
Sbjct: 177 PQCS------SVPEVENTEREKTIQEEAE--------ISATVKSDYHDNKSFIEPAVLLG 222

Query: 235 VVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALK 294
           VV++ E FDFC+ NPPFFE+ EEAGLNPKTSCGGTPEEMVC+GGE+AF++RII+DS  L+
Sbjct: 223 VVKENETFDFCMSNPPFFETFEEAGLNPKTSCGGTPEEMVCNGGEQAFVSRIIKDSAVLR 282

Query: 295 QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISP 354
           Q FRWYTSM+G+K+NLK LISKL +VGVTIVKTTEFVQGQT RWGLAWSF+P ARKII+P
Sbjct: 283 QRFRWYTSMLGKKANLKLLISKLWEVGVTIVKTTEFVQGQTSRWGLAWSFMPIARKIIAP 342

Query: 355 HVAEKKNLSFMLECTLINRSLYQMINVTQS 384
            V +K  LSFMLEC  I R  Y  ++V QS
Sbjct: 343 PVVKKSVLSFMLEC--IKRQ-YSAVDVLQS 369

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569208|ref|NP_179703.2| ribosomal RNA large subunit methyltransferase F [Arabidopsis thaliana] gi|53850469|gb|AAU95411.1| At2g21070 [Arabidopsis thaliana] gi|55733759|gb|AAV59276.1| At2g21070 [Arabidopsis thaliana] gi|330252024|gb|AEC07118.1| ribosomal RNA large subunit methyltransferase F [Arabidopsis thaliana]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/390 (66%), Positives = 299/390 (76%), Gaps = 27/390 (6%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           M S K+R R E   T  P++KYS+NPPDFA LASLYPSF+PFVF+S   R RIDWTD+NA
Sbjct: 1   MRSGKKRARSEPGSTKQPRSKYSDNPPDFASLASLYPSFKPFVFFS-GSRARIDWTDYNA 59

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTRVLLLHDHG+NWWIPDGQLCPTVPNRSNYIHWI DLLSS II +   +G KVKGF
Sbjct: 60  TRELTRVLLLHDHGVNWWIPDGQLCPTVPNRSNYIHWINDLLSSGIIQSLGGDGSKVKGF 119

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASL GWSFVGSD T VALEWAEKNV+SNPH S+LIEIR   +S+  
Sbjct: 120 DIGTGANCIYPLLGASLFGWSFVGSDFTVVALEWAEKNVQSNPHFSDLIEIR---DSKVP 176

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG------PPVLVG 234
           P         SV +  N +    + EEAE        + A  +S YH       P VL+G
Sbjct: 177 PQCS------SVPEVENTEREKTIQEEAE--------ISATVKSDYHDNKSFIEPAVLLG 222

Query: 235 VVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALK 294
           VV++ E FDFC+ NPPFFE+ EEAGLNPKTSCGGTPEEMVC+GGE+AF++RII+DS  L+
Sbjct: 223 VVKENETFDFCMSNPPFFETFEEAGLNPKTSCGGTPEEMVCNGGEQAFVSRIIKDSAVLR 282

Query: 295 QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISP 354
           Q FRWYTSM+G+K+NLK LISKL +VGVTIVKTTEFVQGQT RWGLAWSF+P ARKII+P
Sbjct: 283 QRFRWYTSMLGKKANLKLLISKLWEVGVTIVKTTEFVQGQTSRWGLAWSFMPIARKIIAP 342

Query: 355 HVAEKKNLSFMLECTLINRSLYQMINVTQS 384
            V +K  LSFMLEC  I R  Y  ++V QS
Sbjct: 343 PVVKKSVLSFMLEC--IKRQ-YSAVDVLQS 369

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79322590|ref|NP_001031382.1| ribosomal RNA large subunit methyltransferase F [Arabidopsis thaliana] gi|330252025|gb|AEC07119.1| ribosomal RNA large subunit methyltransferase F [Arabidopsis thaliana]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/390 (66%), Positives = 299/390 (76%), Gaps = 27/390 (6%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           M S K+R R E   T  P++KYS+NPPDFA LASLYPSF+PFVF+S   R RIDWTD+NA
Sbjct: 1   MRSGKKRARSEPGSTKQPRSKYSDNPPDFASLASLYPSFKPFVFFS-GSRARIDWTDYNA 59

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTRVLLLHDHG+NWWIPDGQLCPTVPNRSNYIHWI DLLSS II +   +G KVKGF
Sbjct: 60  TRELTRVLLLHDHGVNWWIPDGQLCPTVPNRSNYIHWINDLLSSGIIQSLGGDGSKVKGF 119

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASL GWSFVGSD T VALEWAEKNV+SNPH S+LIEIR   +S+  
Sbjct: 120 DIGTGANCIYPLLGASLFGWSFVGSDFTVVALEWAEKNVQSNPHFSDLIEIR---DSKVP 176

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG------PPVLVG 234
           P         SV +  N +    + EEAE        + A  +S YH       P VL+G
Sbjct: 177 PQCS------SVPEVENTEREKTIQEEAE--------ISATVKSDYHDNKSFIEPAVLLG 222

Query: 235 VVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALK 294
           VV++ E FDFC+ NPPFFE+ EEAGLNPKTSCGGTPEEMVC+GGE+AF++RII+DS  L+
Sbjct: 223 VVKENETFDFCMSNPPFFETFEEAGLNPKTSCGGTPEEMVCNGGEQAFVSRIIKDSAVLR 282

Query: 295 QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISP 354
           Q FRWYTSM+G+K+NLK LISKL +VGVTIVKTTEFVQGQT RWGLAWSF+P ARKII+P
Sbjct: 283 QRFRWYTSMLGKKANLKLLISKLWEVGVTIVKTTEFVQGQTSRWGLAWSFMPIARKIIAP 342

Query: 355 HVAEKKNLSFMLECTLINRSLYQMINVTQS 384
            V +K  LSFMLEC  I R  Y  ++V QS
Sbjct: 343 PVVKKSVLSFMLEC--IKRQ-YSAVDVLQS 369

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52354261|gb|AAU44451.1| hypothetical protein AT2G21070 [Arabidopsis thaliana]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/390 (66%), Positives = 298/390 (76%), Gaps = 27/390 (6%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           M S K+R R E   T  P++KYS+NPPDFA LASLYPSF+PFVF+S   R RIDWTD+NA
Sbjct: 1   MRSGKKRARSEPGSTKQPRSKYSDNPPDFASLASLYPSFKPFVFFS-GSRARIDWTDYNA 59

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTRVLLLHDHG+NWWIPDGQLCPTVPNRSNYIHWI DLLSS II +   +G KVKGF
Sbjct: 60  TRELTRVLLLHDHGVNWWIPDGQLCPTVPNRSNYIHWINDLLSSGIIQSLGGDGSKVKGF 119

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASL GWSFVGSD T VALEWAEKNV+SNPH S LIEIR   +S+  
Sbjct: 120 DIGTGANCIYPLLGASLFGWSFVGSDFTVVALEWAEKNVQSNPHFSXLIEIR---DSKVP 176

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG------PPVLVG 234
           P         SV +  N +    + EEAE S        A  +S YH       P VL+G
Sbjct: 177 PQCS------SVPEVENTEREKTIQEEAEIS--------ATVKSDYHDNKSFIEPAVLLG 222

Query: 235 VVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALK 294
           VV++ E FDFC+ NPPFFE+ EEAGLNPKTSCGGTPEEMVC+GGE+AF++RII+DS  L+
Sbjct: 223 VVKENETFDFCMSNPPFFETFEEAGLNPKTSCGGTPEEMVCNGGEQAFVSRIIKDSAVLR 282

Query: 295 QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISP 354
           Q FRWYTSM+G+K+NLK LISKL +VGVTIVKTTEFVQGQT RWGLAWSF+P ARKII+P
Sbjct: 283 QRFRWYTSMLGKKANLKLLISKLWEVGVTIVKTTEFVQGQTSRWGLAWSFMPIARKIIAP 342

Query: 355 HVAEKKNLSFMLECTLINRSLYQMINVTQS 384
            V +K  LSFMLEC  I R  Y  ++V QS
Sbjct: 343 PVVKKSVLSFMLEC--IKRQ-YSAVDVLQS 369

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821301|ref|XP_002878533.1| hypothetical protein ARALYDRAFT_480956 [Arabidopsis lyrata subsp. lyrata] gi|297324372|gb|EFH54792.1| hypothetical protein ARALYDRAFT_480956 [Arabidopsis lyrata subsp. lyrata]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 259/385 (67%), Positives = 300/385 (77%), Gaps = 23/385 (5%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           M + K+R R E   T  P+NKYS+NPPDFA LASLYPSF+PFVF+S  GR RIDWTD+NA
Sbjct: 1   MRNGKKRGRSEPGSTKKPRNKYSDNPPDFASLASLYPSFKPFVFFS-GGRARIDWTDYNA 59

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTR+LLLHDHG+NWWIPDGQLCPTVPNRSNYIHWI DLLSS +I +    G +VKGF
Sbjct: 60  TRELTRILLLHDHGVNWWIPDGQLCPTVPNRSNYIHWINDLLSSEVIQSL---GGEVKGF 116

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASL GWSFVGSD T VALEWAEKNVKSNPHIS+LIEIR       +
Sbjct: 117 DIGTGANCIYPLLGASLFGWSFVGSDFTAVALEWAEKNVKSNPHISDLIEIRDSKVLPQS 176

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSS-SSFNLPAGAQSSYHGPPVLVGVVRDG 239
            S+ ES            +++ H  EEAE S++  S NL    Q+ Y  P VL+GVV++ 
Sbjct: 177 SSVPES------------ELTIH--EEAEISATVQSINLVDDNQT-YTEPAVLLGVVKEN 221

Query: 240 EQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRW 299
           E FDFC+ NPPFFE+ EE+GLNPKTSCGGTPEEMVC+GGE+AF++ IIEDS  L+Q FRW
Sbjct: 222 ETFDFCMSNPPFFETFEESGLNPKTSCGGTPEEMVCNGGEQAFVSCIIEDSTVLRQRFRW 281

Query: 300 YTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEK 359
           YTSM+G+K+NLK LISKL +VGVTIVKTTEFVQGQT RWGLAWSF+P ARKII+P V +K
Sbjct: 282 YTSMLGKKANLKLLISKLWQVGVTIVKTTEFVQGQTSRWGLAWSFMPTARKIIAPPVVKK 341

Query: 360 KNLSFMLECTLINRSLYQMINVTQS 384
             LSFMLE   I R  Y  ++V QS
Sbjct: 342 SVLSFMLEG--IKRQ-YSAVDVLQS 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
DICTYBASE|DDB_G0275203	568	DDB_G0275203 "Putative methylt	0.531	0.359	0.413	5.4e-63
ZFIN|ZDB-GENE-040801-130	471	mettl16 "methyltransferase lik	0.393	0.320	0.462	9.9e-60
MGI|MGI:1914743	553	Mettl16 "methyltransferase lik	0.401	0.278	0.465	2e-57
UNIPROTKB|Q86W50	562	METTL16 "Methyltransferase-lik	0.403	0.275	0.462	9.5e-57
UNIPROTKB|E1BCU7	561	METTL16 "Uncharacterized prote	0.401	0.274	0.459	2.1e-56
UNIPROTKB|E2QY36	561	METTL16 "Uncharacterized prote	0.403	0.276	0.456	4.9e-56
UNIPROTKB|Q5ZIA0	558	METTL16 "Methyltransferase-lik	0.395	0.272	0.447	1.2e-54
RGD|1593242	523	Mettl16 "methyltransferase lik	0.401	0.294	0.465	1.3e-49
UNIPROTKB|Q887M4	328	rlmF "Ribosomal RNA large subu	0.414	0.484	0.398	1.6e-47
UNIPROTKB|F1RHG3	565	F1RHG3 "Uncharacterized protei	0.403	0.274	0.456	3.3e-47

DICTYBASE|DDB_G0275203 DDB_G0275203 "Putative methyltransferase METT10D" [Dictyostelium discoideum (taxid:44689)]

 Score = 402 (146.6 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 86/208 (41%), Positives = 121/208 (58%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H  N Y  NPP+F LLAS YP+F+ ++    +    IDW D NAT+ELTRVLL HD G
Sbjct:    41 SMHINNFYRYNPPNFKLLASKYPTFDKYIINKTEKIYNIDWKDSNATKELTRVLLDHDFG 100

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSS-NIIPTTSRNGDKV-KGFDIGTGANCIYPL 132
             L   +PD  LCPT+  R NY++WI D L +  II   + N +K+ KG DIGTG +CI+PL
Sbjct:   101 LRIELPDNYLCPTLTLRINYLYWISDQLKNLKIILNDNDNDNKIIKGIDIGTGTSCIFPL 160

Query:   133 LGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKS 191
             LGA L   WSF+G D+ D  LE+A+ N+  N   S++   +   NS+    +     G +
Sbjct:   161 LGAKLFNNWSFIGIDIDDKVLEYAQNNITINSLNSKITLFKNEKNSDILLKLLNYKEGSN 220

Query:   192 VQDESNMD-MSGHMDEEAEPSSSSSFNL 218
               + SN D    H D++ +    + F L
Sbjct:   221 TFNSSNDDHQDNHDDDDDDEEYFADFCL 248

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-040801-130 mettl16 "methyltransferase like 16" [Danio rerio (taxid:7955)]

 Score = 372 (136.0 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++HP+N+Y + PPDF  LAS YP F+  V  +  GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHPRNRYKDKPPDFVYLASKYPEFQKHVQTTLTGRVTLNFKDPEAVRALTCTLLKEDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
             L   IP  +L PTVP R NYIHW+EDL+           G+  +G DIGTGA+CIYPLLG
Sbjct:    66 LTIEIPLERLIPTVPLRLNYIHWVEDLIGGQ--------GNPQRGIDIGTGASCIYPLLG 117

Query:   135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             A++ GW F+ +++ D+   +A+KNV+ N H++ELI++ KV
Sbjct:   118 ATMNGWFFLATEVDDICFNYAKKNVEQN-HLAELIKVVKV 156

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

MGI|MGI:1914743 Mettl16 "methyltransferase like 16" [Mus musculus (taxid:10090)]

 Score = 363 (132.8 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 75/161 (46%), Positives = 108/161 (67%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  +  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHIQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLS-SNIIPTTSRNGDKVKGFDIGTGANCIYPLL 133
             L+  IP  +L PTVP R NYIHW+EDL+   +   TT R     +G DIGTGA+CIYPLL
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKTTLR-----RGIDIGTGASCIYPLL 120

Query:   134 GASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             GA+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   121 GATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q86W50 METTL16 "Methyltransferase-like protein 16" [Homo sapiens (taxid:9606)]

 Score = 361 (132.1 bits), Expect = 9.5e-57, Sum P(2) = 9.5e-57
 Identities = 74/160 (46%), Positives = 105/160 (65%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  V  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
             L+  IP  +L PTVP R NYIHW+EDL+        S      +G DIGTGA+CIYPLLG
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ----DSDKSTLRRGIDIGTGASCIYPLLG 121

Query:   135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             A+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   122 ATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1BCU7 METTL16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 358 (131.1 bits), Expect = 2.1e-56, Sum P(2) = 2.1e-56
 Identities = 74/161 (45%), Positives = 107/161 (66%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LA+ YP F+  V  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLATKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLS-SNIIPTTSRNGDKVKGFDIGTGANCIYPLL 133
             L+  IP  +L PTVP R NYIHW+EDL+   N   +T R     +G DIGTGA+CIYPLL
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQNSDKSTLR-----RGIDIGTGASCIYPLL 120

Query:   134 GASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             G +L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   121 GTTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E2QY36 METTL16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 355 (130.0 bits), Expect = 4.9e-56, Sum P(2) = 4.9e-56
 Identities = 73/160 (45%), Positives = 103/160 (64%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  V  +  GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHVQINLSGRVSLNFKDPEAVRALTCTLLKEDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
             L+  IP  +L PTVP R NYIHW+EDL+        S      +G DIGTGA+CIYPLLG
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ----GSDKSTLRRGIDIGTGASCIYPLLG 121

Query:   135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
              +L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   122 TTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q5ZIA0 METTL16 "Methyltransferase-like protein 16" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
 Identities = 73/163 (44%), Positives = 104/163 (63%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LA  YP F   V  +  GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLAGKYPEFRQHVQTTLAGRVSLNFKDPEAVRALTCTLLKEDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKV---KGFDIGTGANCIYP 131
             L   IP  +L PTVP R NYIHW+EDL+         ++ DK    +G DIGTGA+CIYP
Sbjct:    66 LTIDIPLERLIPTVPLRLNYIHWVEDLIGH-------QDADKRVLRRGIDIGTGASCIYP 118

Query:   132 LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             LLG++L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   119 LLGSTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|1593242 Mettl16 "methyltransferase like 16" [Rattus norvegicus (taxid:10116)]

 Score = 363 (132.8 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 75/161 (46%), Positives = 108/161 (67%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  +  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHIQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLS-SNIIPTTSRNGDKVKGFDIGTGANCIYPLL 133
             L+  IP  +L PTVP R NYIHW+EDL+   +   TT R     +G DIGTGA+CIYPLL
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKTTLR-----RGIDIGTGASCIYPLL 120

Query:   134 GASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             GA+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   121 GATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q887M4 rlmF "Ribosomal RNA large subunit methyltransferase F" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 287 (106.1 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
 Identities = 65/163 (39%), Positives = 92/163 (56%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             T+HP+N++ +   DF  L    P    FV  +  G+  ID+ +  A R   R LL   +G
Sbjct:    26 TLHPRNRH-QGHYDFPKLIKSSPELAAFVILNPYGKESIDFANPQAVRVFNRALLKAFYG 84

Query:    75 L-NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLL 133
             + +W IP   LCP +P R++Y+H++ D+L+ +      R G  VK  DIGTGANCIYPLL
Sbjct:    85 IAHWDIPADYLCPPIPGRADYLHFLADVLAEDHEGVIPR-GASVKALDIGTGANCIYPLL 143

Query:   134 GASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176
             G S  GW FVGSD+   A+  A   VK+N  + + I +R   N
Sbjct:   144 GHSDYGWQFVGSDIDSTAVAAATAIVKANG-LHKAISVRLQGN 185

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1RHG3 F1RHG3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 358 (131.1 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 73/160 (45%), Positives = 105/160 (65%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  V  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
             L+  IP  +L PTVP R NYIHW+EDL+  +     S      +G DIGTGA+CIYPLLG
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHH----DSDKSTLRRGIDIGTGASCIYPLLG 121

Query:   135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
              +L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   122 TTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.181	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IV.1063.1	hypothetical protein (443 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_10596000001	Predicted protein (480 aa)	•		•						0.430

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
pfam05971	299	pfam05971, Methyltransf_10, Protein of unknown fun	1e-87
PRK11727	321	PRK11727, PRK11727, 23S rRNA mA1618 methyltransfer	8e-79
COG3129	292	COG3129, COG3129, Predicted SAM-dependent methyltr	3e-62

>gnl|CDD|218833 pfam05971, Methyltransf_10, Protein of unknown function (DUF890)

 Score =  266 bits (682), Expect = 1e-87
 Identities = 122/355 (34%), Positives = 175/355 (49%), Gaps = 78/355 (21%)

Query: 10  REERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLL 69
              +  +HP+N++     DFA L S+YP  +  V  + +GR  I++ D  A + L + LL
Sbjct: 1   MALKSGLHPRNRHKGRY-DFAYLISVYPELKQHVQLNPNGRQSINFADPEAVKALNKALL 59

Query: 70  LHDHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLL--SSNIIPTTSRNGDKVKGFDIGTGA 126
              +G+  W IPDG LCP VP R++YIHW+ DLL    + IPT  R        DIGTGA
Sbjct: 60  REFYGVSIWDIPDGFLCPPVPGRADYIHWVADLLGHQDSDIPTLRR------ALDIGTGA 113

Query: 127 NCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQES 186
           NCIYPLLG +  GW FVGS++   +L  A+  V++NP++S+ IE+R+             
Sbjct: 114 NCIYPLLGVTEYGWRFVGSEVDPQSLNSAKAIVEANPNLSDAIELRRQ------------ 161

Query: 187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCI 246
                                  P S+  FN                G++ + E++DF +
Sbjct: 162 -----------------------PQSTLIFN----------------GLIGENERYDFTL 182

Query: 247 CNPPFFESMEEA-----------GLN------PKTSCGGTPEEMVCSGGERAFITRIIED 289
           CNPPF  S+ EA           G        P  + GG   E+ C GGE AFI ++IE+
Sbjct: 183 CNPPFHASLAEAKGGSSRKPTNLGRPNQTLSPPSLNFGGQIAELWCEGGEAAFIKKMIEE 242

Query: 290 SVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
           S+   +  RW+T++V +  NL  L  +LR +G   V  TE  QGQ     +AWSF
Sbjct: 243 SLQFAKQVRWFTTLVSKGCNLPPLKEELRILGAPKVTVTEMAQGQKQSRFIAWSF 297

This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown. Length = 299

>gnl|CDD|236964 PRK11727, PRK11727, 23S rRNA mA1618 methyltransferase; Provisional

 Score =  244 bits (626), Expect = 8e-79
 Identities = 119/367 (32%), Positives = 172/367 (46%), Gaps = 75/367 (20%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
                +++   ++P +HP+N++     DFA L   +P  +PFV  +  G   ID+ +  A
Sbjct: 1   RTKSNKKKMSAQKPGLHPRNRHR-GRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLA 59

Query: 61  TRELTRVLLLHDHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLSS---NIIPTTSRNGDK 116
            + L + LL H +G+ +W IP G LCP +P R++YIH + DLL+     +IP     G  
Sbjct: 60  VKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPR----GAN 115

Query: 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176
           V+  DIG GANCIYPL+G    GW FVGSD+   AL  A+  + +NP ++  I +R   +
Sbjct: 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKD 175

Query: 177 SESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVV 236
           S++                                                   +  G++
Sbjct: 176 SKA---------------------------------------------------IFKGII 184

Query: 237 RDGEQFDFCICNPPFFESMEEA-----------GLNPKTSC----GGTPEEMVCSGGERA 281
              E+FD  +CNPPF  S  EA           GLN         GG   E+ C GGE A
Sbjct: 185 HKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVA 244

Query: 282 FITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA 341
           FI R+IE+S A  +   W+TS+V +K NL  L   L+KVG   VKT E  QGQ     +A
Sbjct: 245 FIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIA 304

Query: 342 WSFVPPA 348
           W+F+   
Sbjct: 305 WTFLDDE 311

Length = 321

>gnl|CDD|225671 COG3129, COG3129, Predicted SAM-dependent methyltransferase [General function prediction only]

 Score =  201 bits (513), Expect = 3e-62
 Identities = 95/330 (28%), Positives = 149/330 (45%), Gaps = 73/330 (22%)

Query: 37  PSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWW-IPDGQLCPTVPNRSNYI 95
           P    F+  +  GR  ID+ +  A + L + LL H + + +W IP+G LCP VP R++YI
Sbjct: 2   PELILFLRLTPAGRQSIDFANPLAVKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYI 61

Query: 96  HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA 155
           H + DLL+S    +    G  ++  DIG GANCIYPL+G    GW FVGS++   +L  A
Sbjct: 62  HHLADLLAST---SGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSA 118

Query: 156 EKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSS 215
           +  + +NP +   I +R+  +S++                                    
Sbjct: 119 KAIISANPGLERAIRLRRQKDSDA------------------------------------ 142

Query: 216 FNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA---------GL------ 260
                          +  G++   E++D  +CNPPF +S  +A          L      
Sbjct: 143 ---------------IFNGIIGKNERYDATLCNPPFHDSAADARAGSQRKRRNLGGELGP 187

Query: 261 ---NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL 317
                  + GG  +E+ C GGE AFI +++E+S A  +   W+T+++ + SNL  L   L
Sbjct: 188 TNKLDALNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFTTLISKGSNLPPLYRAL 247

Query: 318 RKVGVTIVKTTEFVQGQTCRWGLAWSFVPP 347
             VG   V   E  QGQ     +AW+F+  
Sbjct: 248 TDVGAVKVVKKEMAQGQKQSRFIAWTFMDD 277

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	100.0
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	100.0
KOG2912	419	consensus Predicted DNA methylase [Function unknow	100.0
COG3129	292	Predicted SAM-dependent methyltransferase [General	100.0
COG2890	280	HemK Methylase of polypeptide chain release factor	99.97
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.97
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.96
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.96
KOG2904	328	consensus Predicted methyltransferase [General fun	99.94
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.94
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.93
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.93
PLN02672	1082	methionine S-methyltransferase	99.93
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.92
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.91
COG4123	248	Predicted O-methyltransferase [General function pr	99.87
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.82
PRK14967	223	putative methyltransferase; Provisional	99.74
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.7
PRK14968	188	putative methyltransferase; Provisional	99.64
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.64
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.63
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.63
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.57
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.51
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.48
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.46
PHA03412	241	putative methyltransferase; Provisional	99.43
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.4
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.39
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.37
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.36
PHA03411	279	putative methyltransferase; Provisional	99.36
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.36
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.35
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.35
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.34
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.34
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.33
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.32
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.27
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.26
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.26
PLN02336	475	phosphoethanolamine N-methyltransferase	99.23
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.23
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.22
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.21
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.21
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.2
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.14
PLN02490	340	MPBQ/MSBQ methyltransferase	99.14
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.11
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.11
PLN02244	340	tocopherol O-methyltransferase	99.1
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.09
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.09
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.08
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.05
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.04
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.02
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.02
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.0
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.0
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.0
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.99
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.99
PRK07402	196	precorrin-6B methylase; Provisional	98.98
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.98
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.97
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.97
PRK04457	262	spermidine synthase; Provisional	98.95
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.95
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.95
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.94
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.94
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.94
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.94
PRK12335	287	tellurite resistance protein TehB; Provisional	98.92
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.92
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.9
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.89
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.88
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.88
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.88
PRK11207	197	tellurite resistance protein TehB; Provisional	98.88
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.88
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.88
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.88
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.86
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.86
PRK00811	283	spermidine synthase; Provisional	98.86
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.85
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.85
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.83
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.82
TIGR00438	188	rrmJ cell division protein FtsJ.	98.81
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.81
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.81
PRK08317	241	hypothetical protein; Provisional	98.8
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.79
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.79
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.77
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.77
KOG1271	227	consensus Methyltransferases [General function pre	98.76
PRK06922	677	hypothetical protein; Provisional	98.75
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.75
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.75
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.75
PRK04266	226	fibrillarin; Provisional	98.75
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.74
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.74
PRK03612	521	spermidine synthase; Provisional	98.73
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.73
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.73
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.72
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.71
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.71
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.65
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.64
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.63
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.62
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.62
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.62
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.6
PRK06202	232	hypothetical protein; Provisional	98.59
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.59
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.57
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.56
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.55
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.55
PRK01581	374	speE spermidine synthase; Validated	98.55
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.54
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.54
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.53
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.5
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.5
PLN03075	296	nicotianamine synthase; Provisional	98.49
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.48
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.46
COG4122	219	Predicted O-methyltransferase [General function pr	98.46
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.46
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.46
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.46
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.45
PLN02476	278	O-methyltransferase	98.45
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.44
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.44
PLN02366	308	spermidine synthase	98.42
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.4
PRK05785	226	hypothetical protein; Provisional	98.37
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.36
PLN02336	475	phosphoethanolamine N-methyltransferase	98.36
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.32
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.32
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.32
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.31
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.31
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.3
TIGR03438	301	probable methyltransferase. This model represents	98.26
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.21
COG2521	287	Predicted archaeal methyltransferase [General func	98.18
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.16
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.16
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.15
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.14
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.08
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.05
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.03
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.03
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.02
PTZ00146	293	fibrillarin; Provisional	98.02
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.02
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.0
KOG2899	288	consensus Predicted methyltransferase [General fun	97.99
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.93
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.91
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.91
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.9
PLN02823	336	spermine synthase	97.87
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.87
COG0286	489	HsdM Type I restriction-modification system methyl	97.86
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.83
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.82
PRK04148	134	hypothetical protein; Provisional	97.8
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.77
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.74
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.72
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.65
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.63
COG2520	341	Predicted methyltransferase [General function pred	97.45
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.44
KOG4300	252	consensus Predicted methyltransferase [General fun	97.39
PF13679	141	Methyltransf_32: Methyltransferase domain	97.36
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.3
KOG3010	261	consensus Methyltransferase [General function pred	97.29
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.29
KOG2730	263	consensus Methylase [General function prediction o	97.23
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.23
PRK10742	250	putative methyltransferase; Provisional	97.19
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.17
COG3897	218	Predicted methyltransferase [General function pred	97.09
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.05
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.03
COG4076	252	Predicted RNA methylase [General function predicti	96.99
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.98
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	96.95
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.95
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.92
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.89
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.81
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.72
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.65
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.63
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.63
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.45
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.45
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.41
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.41
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.4
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.36
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.36
KOG2361	264	consensus Predicted methyltransferase [General fun	96.2
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.19
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.76
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	95.51
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.38
TIGR00497	501	hsdM type I restriction system adenine methylase (	95.38
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	95.3
KOG3115	249	consensus Methyltransferase-like protein [General	95.09
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.95
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	94.75
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	94.75
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	94.67
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	94.64
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	94.64
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.61
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	94.5
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	94.44
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	94.01
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	93.84
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	93.65
PRK11524	284	putative methyltransferase; Provisional	93.6
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	93.43
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	93.12
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	92.99
PRK11524	284	putative methyltransferase; Provisional	92.86
PHA01634	156	hypothetical protein	92.64
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	92.64
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	92.28
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	92.25
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	92.12
PRK13699	227	putative methylase; Provisional	91.82
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	90.77
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	90.61
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	90.51
PRK00536	262	speE spermidine synthase; Provisional	90.31
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	90.15
PRK13699	227	putative methylase; Provisional	88.96
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	88.77
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	87.88
KOG2078	495	consensus tRNA modification enzyme [RNA processing	87.54
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	86.55
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	85.83
KOG3201	201	consensus Uncharacterized conserved protein [Funct	85.69
PRK10458	467	DNA cytosine methylase; Provisional	84.6
COG4262	508	Predicted spermidine synthase with an N-terminal m	84.51
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	84.39
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	84.0
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	82.81
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	82.06
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	81.98

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=100.00  E-value=4.5e-83  Score=620.65  Aligned_cols=278  Identities=52%  Similarity=0.952  Sum_probs=175.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcE-EEecCCCccCCCcCH
Q 016734           13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNR   91 (384)
Q Consensus        13 ~~~mHprN~y~~~~~df~~La~~~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~-~~vp~~~LiPrvP~r   91 (384)
                      ++.|||||+|++ +|||++|+++||+|++||..+.+|+.+|||+|++|+++||+|||++||||+ |++|+++|||+||+|
T Consensus         4 ~~~mHprN~~~~-~~dF~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R   82 (299)
T PF05971_consen    4 KKSMHPRNPYKD-RYDFAALAKKYPELKKFVIINKKGRVSIDFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNR   82 (299)
T ss_dssp             ----------------------------------------S-TTSHHHHHHHHHHHHHHHH--------TTS----HHHH
T ss_pred             cCCCCCCCCCCC-CCCHHHHHHhCcchhHhhEECCCCcEEEecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchh
Confidence            578999999985 789999999999999999999999999999999999999999999999998 599999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      ++||+||+|+|......    ....+++||||||+.|||++|+.+.++|+|+|+|||+.+++.|++|+++|..|+++|++
T Consensus        83 ~nYi~~i~DlL~~~~~~----~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l  158 (299)
T PF05971_consen   83 LNYIHWIADLLASSNPG----IPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIEL  158 (299)
T ss_dssp             HHHHHHHHHHHT--TCG----CS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred             HHHHHHHHHHhhccccc----cccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEE
Confidence            99999999999864311    12368999999999999999999999999999999999999999999999339999999


Q ss_pred             EEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCc
Q 016734          172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF  251 (384)
Q Consensus       172 ~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy  251 (384)
                      +++....                                                   .+|.++....+.|||+||||||
T Consensus       159 ~~~~~~~---------------------------------------------------~i~~~i~~~~e~~dftmCNPPF  187 (299)
T PF05971_consen  159 RKQKNPD---------------------------------------------------NIFDGIIQPNERFDFTMCNPPF  187 (299)
T ss_dssp             EE--ST----------------------------------------------------SSTTTSTT--S-EEEEEE----
T ss_pred             EEcCCcc---------------------------------------------------ccchhhhcccceeeEEecCCcc
Confidence            9875211                                                   2455555566799999999999


Q ss_pred             ccchhhhc---------c--------CCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHH
Q 016734          252 FESMEEAG---------L--------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI  314 (384)
Q Consensus       252 ~~s~~~~~---------~--------~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~  314 (384)
                      |++.+++.         +        +|..+|+|+..||+|+|||++||++||+||..+.+++.|||+||||+++++.|+
T Consensus       188 y~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~  267 (299)
T PF05971_consen  188 YSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLK  267 (299)
T ss_dssp             -SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHH
T ss_pred             ccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHH
Confidence            99987642         1        578899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEEEeeCCCeeEEEEEEecCC
Q 016734          315 SKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVP  346 (384)
Q Consensus       315 ~~L~~~g~~~v~~~e~~qG~t~Rw~~AWsf~~  346 (384)
                      +.|++.|+.++++++|.||+|.||+|||||++
T Consensus       268 ~~L~~~~~~~~~~~e~~QG~t~rw~lAWsF~d  299 (299)
T PF05971_consen  268 KELKKLGATNYKVTEMCQGQTKRWILAWSFLD  299 (299)
T ss_dssp             HHHHHTT-SEEEEEEEEETTEEEEEEEEES--
T ss_pred             HHHHhcCCceEEEEEccCCceEEEEEEEeccC
Confidence            99999999999999999999999999999974

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=100.00  E-value=2.3e-75  Score=574.59  Aligned_cols=290  Identities=39%  Similarity=0.724  Sum_probs=253.7

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcE-EEecCCCcc
Q 016734            7 RRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLC   85 (384)
Q Consensus         7 ~~~~~~~~~mHprN~y~~~~~df~~La~~~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~-~~vp~~~Li   85 (384)
                      ...+..++.|||||+|+ ++|||++|+++||+|++||..+..|+.+|||+||+||++||+|||+++|||+ |++|+++||
T Consensus         7 ~~~~~~~~~~h~rn~~~-~~~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~Lc   85 (321)
T PRK11727          7 KKMSAQKPGLHPRNRHR-GRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLC   85 (321)
T ss_pred             cccCccccCCCCCCcCC-CCCCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcC
Confidence            33444557899999998 5899999999999999999999999999999999999999999999999998 799999999


Q ss_pred             CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC-CC
Q 016734           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN-PH  164 (384)
Q Consensus        86 PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n-~~  164 (384)
                      |+||+|++||+|+.|+|........ +.+...++||||||+|||+++|+.+.++|+|+|+|||+.|+++|++|++.| + 
T Consensus        86 PpiP~R~~Yi~~l~dll~~~~~~~~-p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~-  163 (321)
T PRK11727         86 PPIPGRADYIHHLADLLAEDNGGVI-PRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG-  163 (321)
T ss_pred             CCCCcHHHHHHHHHHHhcccccccC-CCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC-
Confidence            9999999999999999976421111 123568999999999999999999999999999999999999999999999 7 


Q ss_pred             CCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEE
Q 016734          165 ISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDF  244 (384)
Q Consensus       165 l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~  244 (384)
                      ++++|.++......                                                   .++.++....+.||+
T Consensus       164 l~~~I~~~~~~~~~---------------------------------------------------~i~~~i~~~~~~fDl  192 (321)
T PRK11727        164 LNGAIRLRLQKDSK---------------------------------------------------AIFKGIIHKNERFDA  192 (321)
T ss_pred             CcCcEEEEEccchh---------------------------------------------------hhhhcccccCCceEE
Confidence            88999987643211                                                   123333224578999


Q ss_pred             EEECCCcccchhhhc---------c----C--CccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCC
Q 016734          245 CICNPPFFESMEEAG---------L----N--PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSN  309 (384)
Q Consensus       245 i~cNPPy~~s~~~~~---------~----~--p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~  309 (384)
                      ||||||||++.+++.         +    +  +.+.|+|...||+|+|||+.||.+|+++|..++.+++|||+|+||+++
T Consensus       193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~  272 (321)
T PRK11727        193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKEN  272 (321)
T ss_pred             EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCC
Confidence            999999999887631         0    1  146788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEEecCCcccc
Q 016734          310 LKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK  350 (384)
Q Consensus       310 l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AWsf~~~~~~  350 (384)
                      ++.|++.|++.|+++++++||.||++.||+|||||....++
T Consensus       273 l~~l~~~L~~~~~~~~~~~e~~qG~~~~~~vaWsf~~~~~~  313 (321)
T PRK11727        273 LPPLYRALKKVGAVEVKTIEMAQGQKQSRFIAWTFLDDEQR  313 (321)
T ss_pred             HHHHHHHHHHcCCceEEEEEEeCCCeeeEEEEeecCCHHHh
Confidence            99999999999999999999999999999999999987654

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=100.00  E-value=1.1e-73  Score=547.80  Aligned_cols=296  Identities=52%  Similarity=0.906  Sum_probs=263.5

Q ss_pred             CCCCCCCCCCCCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHH
Q 016734           14 PTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSN   93 (384)
Q Consensus        14 ~~mHprN~y~~~~~df~~La~~~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~   93 (384)
                      +.|||||+|+++||||+.||..||+|++||+.+.+|+++|||+|++|+|+||++||++||||.+++|+|+|||+||+|++
T Consensus         5 k~mhpRn~Y~dkPPDfa~LaseyPsfK~fvq~~~ngRv~~Dfkd~~AvR~Lt~tLL~~Dfgl~veiP~grLcPtVPnR~n   84 (419)
T KOG2912|consen    5 KSMHPRNRYKDKPPDFAYLASEYPSFKQFVQINLNGRVSLDFKDPEAVRALTCTLLREDFGLSVEIPLGRLCPTVPNRLN   84 (419)
T ss_pred             cccCCcccccCCCccHHHHHHhCccchhheEeccCCeEEeecCCHHHHHHHHHHHHhhccCceEecCccccCCCCccchh
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEE
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK  173 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~  173 (384)
                      |||||.|||....    ..++...+++|||||+.||+.+++.+..+|.++|+|||...+..|+.|+..|+ ++++|.+++
T Consensus        85 YihwI~DLLss~q----~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~-lss~ikvV~  159 (419)
T KOG2912|consen   85 YIHWIEDLLSSQQ----SDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN-LSSLIKVVK  159 (419)
T ss_pred             hHHHHHHHhhccc----CCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc-cccceeeEE
Confidence            9999999998652    12233345899999999999999999999999999999999999999999998 999999998


Q ss_pred             cCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCccc
Q 016734          174 VDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFE  253 (384)
Q Consensus       174 ~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~  253 (384)
                      .....                ...+|.                               +..  ..+..|||||||||||+
T Consensus       160 ~~~~k----------------tll~d~-------------------------------~~~--~~e~~ydFcMcNPPFfe  190 (419)
T KOG2912|consen  160 VEPQK----------------TLLMDA-------------------------------LKE--ESEIIYDFCMCNPPFFE  190 (419)
T ss_pred             ecchh----------------hcchhh-------------------------------hcc--CccceeeEEecCCchhh
Confidence            75211                000110                               100  12467999999999999


Q ss_pred             chhhhcc---------CCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeE
Q 016734          254 SMEEAGL---------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI  324 (384)
Q Consensus       254 s~~~~~~---------~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~  324 (384)
                      ...|++.         .|..+|.|...|++..|||++||.+|+.+|..++++++|||+|+||+++++.|+..|+..|++.
T Consensus       191 ~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~k  270 (419)
T KOG2912|consen  191 NQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRKRIRWYTCMLGKKSSLKPLISKLREQGVTK  270 (419)
T ss_pred             chhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhhcceEEeeecccccccHHHHHHHHHcCCce
Confidence            8776643         3666889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCeeEEEEEEecCCccccccCCCccccccce
Q 016734          325 VKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLS  363 (384)
Q Consensus       325 v~~~e~~qG~t~Rw~~AWsf~~~~~~~~~~~~~~~~~~~  363 (384)
                      |.++||+||+|.||++||||++...+.+-|.+..++-.|
T Consensus       271 v~itel~qGkTkRW~LaWSF~~~v~~~~~ps~~rps~~s  309 (419)
T KOG2912|consen  271 VKITELVQGKTKRWGLAWSFMPIVRKIIAPSVVRPSVKS  309 (419)
T ss_pred             EEEEEeeccccceeeEEeeecccccccCCchhcccchhh
Confidence            999999999999999999999999998888877777665

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=100.00  E-value=6.3e-57  Score=417.07  Aligned_cols=261  Identities=36%  Similarity=0.711  Sum_probs=235.8

Q ss_pred             CCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcE-EEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCC
Q 016734           36 YPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNG  114 (384)
Q Consensus        36 ~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~-~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~  114 (384)
                      .|+|..|+..+..|+.+|||.||.||+.||||||.+||+++ |++|+|.|||+||+|++|||+++|||....-   ...+
T Consensus         1 ~Pel~~f~~~~p~G~~siDFanp~AVk~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g---~~~~   77 (292)
T COG3129           1 MPELILFLRLTPAGRQSIDFANPLAVKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSG---QIPG   77 (292)
T ss_pred             CcceeeeeeccCCCceeeccCCHHHHHHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCC---CCCc
Confidence            48999999999999999999999999999999999999997 9999999999999999999999999986431   1224


Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      +..++||||+|+.|||++++.+.++|+++|+|||+.+++.|+.++..|..++..|+++.+...+                
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~----------------  141 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD----------------  141 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc----------------
Confidence            6789999999999999999999999999999999999999999999995599999998876321                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhc---------c-----
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAG---------L-----  260 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~---------~-----  260 (384)
                                                         .+|.++....|.||++||||||+.+.+++.         +     
T Consensus       142 -----------------------------------~if~giig~nE~yd~tlCNPPFh~s~~da~~gsqrk~~nl~g~l~  186 (292)
T COG3129         142 -----------------------------------AIFNGIIGKNERYDATLCNPPFHDSAADARAGSQRKRRNLGGELG  186 (292)
T ss_pred             -----------------------------------ccccccccccceeeeEecCCCcchhHHHHHhcccCCccccccccc
Confidence                                               367777767899999999999999987641         1     


Q ss_pred             ----CCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCee
Q 016734          261 ----NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTC  336 (384)
Q Consensus       261 ----~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~  336 (384)
                          .|...|+|...|++|+|||.+||.+|++||..+.+++.|||+++++.+++..+.+.|+..|...+.+.++.||++.
T Consensus       187 ~~~~~~~lnfggq~qelwCegGe~afi~~mv~es~afakqv~WfttLisk~snlp~l~~~l~~~ga~~v~~~emaqgqK~  266 (292)
T COG3129         187 PTNKLDALNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFTTLISKGSNLPPLYRALTDVGAVKVVKKEMAQGQKQ  266 (292)
T ss_pred             ccccchhhhccCCceEEEecCcchhhHHHHHHHHHHHhhheehheeecCCcCCCHHHHHHHHHhcceeeeehhhcccccc
Confidence                1445688999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             EEEEEEecCCcccc
Q 016734          337 RWGLAWSFVPPARK  350 (384)
Q Consensus       337 Rw~~AWsf~~~~~~  350 (384)
                      ...|||||.++.++
T Consensus       267 SrfIaWtf~d~eqr  280 (292)
T COG3129         267 SRFIAWTFMDDEQR  280 (292)
T ss_pred             ceeEEEEeeCHHHH
Confidence            77899999987654

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=7e-31  Score=255.21  Aligned_cols=198  Identities=22%  Similarity=0.272  Sum_probs=160.1

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      .+|+|++|.+.++||+|| |+|+.+++++...+...         .. +|||||||||||++.++.+.+.++|+|+|||+
T Consensus        76 ~~f~gl~~~v~~~vliPr-~dTe~Lve~~l~~~~~~---------~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~  144 (280)
T COG2890          76 AEFGGLRFKVDEGVLIPR-PDTELLVEAALALLLQL---------DK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISP  144 (280)
T ss_pred             CeecceeeeeCCCceecC-CchHHHHHHHHHhhhhc---------CC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCH
Confidence            579999999999999999 99999999987444321         12 79999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      +|+++|++|++.|+ + .++.++.+|.                                                     
T Consensus       145 ~Al~~A~~Na~~~~-l-~~~~~~~~dl-----------------------------------------------------  169 (280)
T COG2890         145 DALALARENAERNG-L-VRVLVVQSDL-----------------------------------------------------  169 (280)
T ss_pred             HHHHHHHHHHHHcC-C-ccEEEEeeec-----------------------------------------------------
Confidence            99999999999998 6 5666666542                                                     


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK  307 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~  307 (384)
                        |.++   .++||+|||||||.+.. .....|...  ..+....+.||  ++.++++|+.++..+++.++|+.+++| .
T Consensus       170 --f~~~---~~~fDlIVsNPPYip~~-~~~~~~~~~--~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~  240 (280)
T COG2890         170 --FEPL---RGKFDLIVSNPPYIPAE-DPELLPEVV--RYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-L  240 (280)
T ss_pred             --cccc---CCceeEEEeCCCCCCCc-ccccChhhh--ccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-C
Confidence              3333   34899999999999986 221111110  12222233333  599999999999999999999999999 8


Q ss_pred             CCHHHHHHHHHHcC-CeEEEEEEeeCCCeeEEEEEEe
Q 016734          308 SNLKFLISKLRKVG-VTIVKTTEFVQGQTCRWGLAWS  343 (384)
Q Consensus       308 ~~l~~l~~~L~~~g-~~~v~~~e~~qG~t~Rw~~AWs  343 (384)
                      .+.+.+.+++.+.| +..+.+.++..|+ .|-+++|.
T Consensus       241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~-~rv~~~~~  276 (280)
T COG2890         241 TQGEAVKALFEDTGFFEIVETLKDLFGR-DRVVLAKL  276 (280)
T ss_pred             CcHHHHHHHHHhcCCceEEEEEecCCCc-eEEEEEEe
Confidence            99999999999999 7888999999887 77777764

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.97  E-value=3.6e-29  Score=261.07  Aligned_cols=209  Identities=18%  Similarity=0.197  Sum_probs=164.8

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCC---C-----C-----CCC--CCCCCCeEEEECCcccHHHHHHH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNI---I-----P-----TTS--RNGDKVKGFDIGTGANCIYPLLG  134 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~---~-----~-----~~~--~~~~~~~vLDIGtGsG~I~~~La  134 (384)
                      ++|||++|.|.++||||| |+||.+|+++.+.+....   .     +     ...  ......+|||+|||||++++.++
T Consensus        79 ~~F~g~~f~V~~~VLIPR-peTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la  157 (506)
T PRK01544         79 KEFYSREFIVNKHVLIPR-SDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL  157 (506)
T ss_pred             CEEcCcEEEeCCCcccCC-CcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence            779999999999999999 999999999987653100   0     0     000  01134589999999999999999


Q ss_pred             hhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCC
Q 016734          135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS  214 (384)
Q Consensus       135 ~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (384)
                      ...++++|+|+|+|+.|++.|++|++.++ +.+++.++++|..+                                    
T Consensus       158 ~~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~------------------------------------  200 (506)
T PRK01544        158 CELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFE------------------------------------  200 (506)
T ss_pred             HHCCCCeEEEEECCHHHHHHHHHHHHHcC-Cccceeeeecchhh------------------------------------
Confidence            88899999999999999999999999997 77889998887421                                    


Q ss_pred             CCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHH
Q 016734          215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVA  292 (384)
Q Consensus       215 ~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~  292 (384)
                                         .+  ..++||+|||||||++..+.....+..  ...+..+++.||  ++.+++++++++..
T Consensus       201 -------------------~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v--~~~EP~~AL~gg~dGl~~~~~il~~a~~  257 (506)
T PRK01544        201 -------------------NI--EKQKFDFIVSNPPYISHSEKSEMAIET--INYEPSIALFAEEDGLQAYFIIAENAKQ  257 (506)
T ss_pred             -------------------hC--cCCCccEEEECCCCCCchhhhhcCchh--hccCcHHHhcCCccHHHHHHHHHHHHHH
Confidence                               11  135799999999999976543221111  012223334444  58999999999999


Q ss_pred             hhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEE
Q 016734          293 LKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA  341 (384)
Q Consensus       293 l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~A  341 (384)
                      +++++|++.+++| .++.+.+.+++.+.|+..+.+.+|.+|+ .|.+++
T Consensus       258 ~L~~gG~l~lEig-~~q~~~v~~~~~~~g~~~~~~~~D~~g~-~R~v~~  304 (506)
T PRK01544        258 FLKPNGKIILEIG-FKQEEAVTQIFLDHGYNIESVYKDLQGH-SRVILI  304 (506)
T ss_pred             hccCCCEEEEEEC-CchHHHHHHHHHhcCCCceEEEecCCCC-ceEEEe
Confidence            9999999999999 8899999999999999999999999998 886654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.96  E-value=1.2e-28  Score=239.55  Aligned_cols=201  Identities=23%  Similarity=0.318  Sum_probs=163.3

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ++|||++|.+++++|||| |+|+.+++++.+.+...        ....+|||+|||+|++++.++...++++++|+|+|+
T Consensus        78 ~~f~g~~f~v~~~vliPr-~ete~lv~~~l~~~~~~--------~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~  148 (284)
T TIGR00536        78 KEFYGLEFFVNEHVLIPR-PETEELVEKALASLISQ--------NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP  148 (284)
T ss_pred             ceEcCeEEEECCCCcCCC-CccHHHHHHHHHHhhhc--------CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH
Confidence            779999999999999999 99999999987654321        112589999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      .|++.|++|++.++ +.+++.++++|..+                                                   
T Consensus       149 ~al~~a~~n~~~~~-~~~~v~~~~~d~~~---------------------------------------------------  176 (284)
T TIGR00536       149 DALAVAEENAEKNQ-LEHRVEFIQSNLFE---------------------------------------------------  176 (284)
T ss_pred             HHHHHHHHHHHHcC-CCCcEEEEECchhc---------------------------------------------------
Confidence            99999999999997 77779999887431                                                   


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK  307 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~  307 (384)
                          .+  ...+||+|||||||++..+.... +...  ..+...++.||  ++.++++++.++..+++++|++.+++| .
T Consensus       177 ----~~--~~~~fDlIvsNPPyi~~~~~~~~-~~~~--~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g-~  246 (284)
T TIGR00536       177 ----PL--AGQKIDIIVSNPPYIDEEDLADL-PNVV--RFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG-N  246 (284)
T ss_pred             ----cC--cCCCccEEEECCCCCCcchhhcC-Cccc--ccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC-c
Confidence                11  12379999999999988653322 1110  12223333444  589999999999999999999999999 7


Q ss_pred             CCHHHHHHHHH-HcCCeEEEEEEeeCCCeeEEEEEE
Q 016734          308 SNLKFLISKLR-KVGVTIVKTTEFVQGQTCRWGLAW  342 (384)
Q Consensus       308 ~~l~~l~~~L~-~~g~~~v~~~e~~qG~t~Rw~~AW  342 (384)
                      .+...+.+++. +.|+..+.+.+|..|+ .|+++++
T Consensus       247 ~q~~~~~~~~~~~~~~~~~~~~~D~~g~-~R~~~~~  281 (284)
T TIGR00536       247 WQQKSLKELLRIKFTWYDVENGRDLNGK-ERVVLGF  281 (284)
T ss_pred             cHHHHHHHHHHhcCCCceeEEecCCCCC-ceEEEEE
Confidence            89999999998 5789899999999997 8988875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.96  E-value=3.1e-28  Score=246.50  Aligned_cols=198  Identities=17%  Similarity=0.143  Sum_probs=162.0

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ++|||++|.+++++|||| |+|+.+++++.+.+.           ...++||+|||||++++.++...++++++|+|+|+
T Consensus       218 ~~F~G~~f~V~p~vLIPR-peTE~LVe~aL~~l~-----------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~  285 (423)
T PRK14966        218 REFYGRRFAVNPNVLIPR-PETEHLVEAVLARLP-----------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP  285 (423)
T ss_pred             eeecCcEEEeCCCccCCC-ccHHHHHHHhhhccC-----------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH
Confidence            679999999999999999 999999999886542           12489999999999999999888999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      +|++.|++|++.++ .  ++.++++|..+.                                                  
T Consensus       286 ~ALe~AreNa~~~g-~--rV~fi~gDl~e~--------------------------------------------------  312 (423)
T PRK14966        286 PALETARKNAADLG-A--RVEFAHGSWFDT--------------------------------------------------  312 (423)
T ss_pred             HHHHHHHHHHHHcC-C--cEEEEEcchhcc--------------------------------------------------
Confidence            99999999999886 3  699998875320                                                  


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK  307 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~  307 (384)
                       .+    ...++||+|+|||||++..+....++..   ..+..+++.||  ++.|+++|++++..+++++|++.+++| .
T Consensus       313 -~l----~~~~~FDLIVSNPPYI~~~e~~l~~~~v---~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~  383 (423)
T PRK14966        313 -DM----PSEGKWDIIVSNPPYIENGDKHLLQGDL---RFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-F  383 (423)
T ss_pred             -cc----ccCCCccEEEECCCCCCcchhhhcchhh---hcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-c
Confidence             00    0134799999999999876532211111   11223344454  499999999999999999999999999 7


Q ss_pred             CCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEE
Q 016734          308 SNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW  342 (384)
Q Consensus       308 ~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AW  342 (384)
                      +|.+.+.+++++.|+..+++.+|..|+ .|.+++.
T Consensus       384 ~Q~e~V~~ll~~~Gf~~v~v~kDl~G~-dR~v~~~  417 (423)
T PRK14966        384 DQGAAVRGVLAENGFSGVETLPDLAGL-DRVTLGK  417 (423)
T ss_pred             cHHHHHHHHHHHCCCcEEEEEEcCCCC-cEEEEEE
Confidence            899999999999999999999999998 8988875

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.94  E-value=2.7e-26  Score=218.08  Aligned_cols=209  Identities=16%  Similarity=0.187  Sum_probs=155.7

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      +.|-++++.+-+|||||| ||||.+|+|+.|.+.....      .++..+||+|||||||++.+++..+..+|+|||.++
T Consensus       110 ~~F~~l~l~~~pgVlIPR-pETEE~V~~Vid~~~~~~~------~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~  182 (328)
T KOG2904|consen  110 QPFGDLDLVCKPGVLIPR-PETEEWVEAVIDALNNSEH------SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK  182 (328)
T ss_pred             CccCCceEEecCCeeecC-ccHHHHHHHHHHHHhhhhh------cccceEEEecCCccHHHHHHHhcCCCceEEEEeccH
Confidence            457788999999999999 9999999999998875421      234479999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      .|+.+|.+|++++. +.++|.+++-+...                                   +.|.            
T Consensus       183 ~Ai~La~eN~qr~~-l~g~i~v~~~~me~-----------------------------------d~~~------------  214 (328)
T KOG2904|consen  183 AAIKLAKENAQRLK-LSGRIEVIHNIMES-----------------------------------DASD------------  214 (328)
T ss_pred             HHHHHHHHHHHHHh-hcCceEEEeccccc-----------------------------------cccc------------
Confidence            99999999999998 99999998765321                                   0000            


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK  307 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~  307 (384)
                          ......+++|+++|||||+.+.+...+.|..  .-.++.+++.||  +..++..+..-+.+.+..+|++.++++-.
T Consensus       215 ----~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV--~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~  288 (328)
T KOG2904|consen  215 ----EHPLLEGKIDLLVSNPPYIRKDDNRQLKPEV--RLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER  288 (328)
T ss_pred             ----ccccccCceeEEecCCCcccccchhhcCchh--eecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence                0001357899999999999998755443322  223444555555  47888888888888888899988888722


Q ss_pred             CC----HHHHHHHHHHcCCeEEEEEEeeCCCeeEEEE
Q 016734          308 SN----LKFLISKLRKVGVTIVKTTEFVQGQTCRWGL  340 (384)
Q Consensus       308 ~~----l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~  340 (384)
                      .+    ...+...+.+--...+++..+..|+ .|+++
T Consensus       289 ~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~-~Rfv~  324 (328)
T KOG2904|consen  289 KEHSYLVRIWMISLKDDSNGKAAVVSDFAGR-PRFVI  324 (328)
T ss_pred             ccCcHHHHHHHHhchhhccchhheeecccCC-cceEE
Confidence            22    2333333334444567788887776 66554

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.94  E-value=6.7e-25  Score=210.26  Aligned_cols=200  Identities=24%  Similarity=0.350  Sum_probs=159.8

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      .+|||++|.+.+++|+|| |+|+.+++++.+.+..         ....+|||+|||+|+++..++...+.++++|+|+++
T Consensus        73 ~~f~~~~~~~~~~~lipr-~~te~l~~~~~~~~~~---------~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~  142 (275)
T PRK09328         73 AEFWGLDFKVSPGVLIPR-PETEELVEWALEALLL---------KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP  142 (275)
T ss_pred             ceEcCcEEEECCCceeCC-CCcHHHHHHHHHhccc---------cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH
Confidence            679999999999999999 9999999999865432         234689999999999999999888889999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      .+++.|++|+. +. ...++.++.+|..+                                                   
T Consensus       143 ~~l~~a~~n~~-~~-~~~~i~~~~~d~~~---------------------------------------------------  169 (275)
T PRK09328        143 EALAVARRNAK-HG-LGARVEFLQGDWFE---------------------------------------------------  169 (275)
T ss_pred             HHHHHHHHHHH-hC-CCCcEEEEEccccC---------------------------------------------------
Confidence            99999999998 33 45579998887421                                                   


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK  307 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~  307 (384)
                          .+  ..++||+|+|||||++..+.....+...  ..+....+.||  ++.++.++++++..+++.+|++.+++| .
T Consensus       170 ----~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~--~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~  240 (275)
T PRK09328        170 ----PL--PGGRFDLIVSNPPYIPEADIHLLQPEVR--DHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-Y  240 (275)
T ss_pred             ----cC--CCCceeEEEECCCcCCcchhhhCCchhh--hcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-c
Confidence                01  1368999999999998754332211110  11222233333  589999999999999999999999999 6


Q ss_pred             CCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEE
Q 016734          308 SNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW  342 (384)
Q Consensus       308 ~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AW  342 (384)
                      .+.+.+.++|++.|+..+.+..+..|+ .|+++++
T Consensus       241 ~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~~~~  274 (275)
T PRK09328        241 DQGEAVRALLAAAGFADVETRKDLAGR-DRVVLGR  274 (275)
T ss_pred             hHHHHHHHHHHhCCCceeEEecCCCCC-ceEEEEE
Confidence            788999999999999999999899887 8888864

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.93  E-value=5.6e-25  Score=214.21  Aligned_cols=190  Identities=20%  Similarity=0.272  Sum_probs=149.6

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHH-HhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~d-ll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid  148 (384)
                      ++|+|++|.|++++|||| |+++.++.+... .+..         ....+|||+|||+|++++.++...++++++|+|+|
T Consensus        85 ~~f~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis  154 (284)
T TIGR03533        85 AWFAGLEFYVDERVLIPR-SPIAELIEDGFAPWLEP---------EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS  154 (284)
T ss_pred             CeecCcEEEECCCCccCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC
Confidence            568899999999999999 999999988764 3321         12358999999999999999998889999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCC
Q 016734          149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG  228 (384)
Q Consensus       149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  228 (384)
                      +.|++.|++|++.++ +.++|.++.+|..+                                                  
T Consensus       155 ~~al~~A~~n~~~~~-~~~~i~~~~~D~~~--------------------------------------------------  183 (284)
T TIGR03533       155 PDALAVAEINIERHG-LEDRVTLIQSDLFA--------------------------------------------------  183 (284)
T ss_pred             HHHHHHHHHHHHHcC-CCCcEEEEECchhh--------------------------------------------------
Confidence            999999999999998 77789999887421                                                  


Q ss_pred             CCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecC
Q 016734          229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGR  306 (384)
Q Consensus       229 ~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk  306 (384)
                           .+  ..++||+|+|||||++..+...+.+.  + ..+..++..||  ++.++++++.++..+++.+|++.+++| 
T Consensus       184 -----~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~--~-~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g-  252 (284)
T TIGR03533       184 -----AL--PGRKYDLIVSNPPYVDAEDMADLPAE--Y-HHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG-  252 (284)
T ss_pred             -----cc--CCCCccEEEECCCCCCccchhhCCHh--h-hcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-
Confidence                 11  13479999999999987653322221  1 13444555566  489999999999999999999999999 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEEEeeCCCe
Q 016734          307 KSNLKFLISKLRKVGVTIVKTTEFVQGQT  335 (384)
Q Consensus       307 ~~~l~~l~~~L~~~g~~~v~~~e~~qG~t  335 (384)
                      .++ +.+.+++.+.|+..   ..+-++++
T Consensus       253 ~~~-~~v~~~~~~~~~~~---~~~~~~~~  277 (284)
T TIGR03533       253 NSM-EALEEAYPDVPFTW---LEFENGGD  277 (284)
T ss_pred             cCH-HHHHHHHHhCCCce---eeecCCCc
Confidence            445 79999999988653   34444443

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.93  E-value=2.5e-24  Score=211.91  Aligned_cols=195  Identities=20%  Similarity=0.264  Sum_probs=148.8

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHH-HhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~d-ll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid  148 (384)
                      ++|+|++|.|++++|||| |+++.++.++.. ++..         ....+|||+|||+|++++.++...++++|+|+|+|
T Consensus        97 ~~F~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis  166 (307)
T PRK11805         97 AWFCGLEFYVDERVLVPR-SPIAELIEDGFAPWLED---------PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDIS  166 (307)
T ss_pred             ceEcCcEEEECCCCcCCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCC
Confidence            679999999999999999 999999988754 3321         11258999999999999999998899999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCC
Q 016734          149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG  228 (384)
Q Consensus       149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  228 (384)
                      +.|++.|++|++.++ +.++|+++++|..+                                                  
T Consensus       167 ~~al~~A~~n~~~~~-l~~~i~~~~~D~~~--------------------------------------------------  195 (307)
T PRK11805        167 PDALAVAEINIERHG-LEDRVTLIESDLFA--------------------------------------------------  195 (307)
T ss_pred             HHHHHHHHHHHHHhC-CCCcEEEEECchhh--------------------------------------------------
Confidence            999999999999997 77789999887421                                                  


Q ss_pred             CCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecC
Q 016734          229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGR  306 (384)
Q Consensus       229 ~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk  306 (384)
                           .+  ..++||+|||||||++..+...+.+..   ..+.++++.||  ++.+++++++++..+++++|++.+++|.
T Consensus       196 -----~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~---~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        196 -----AL--PGRRYDLIVSNPPYVDAEDMADLPAEY---RHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             -----hC--CCCCccEEEECCCCCCccchhhcCHhh---ccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence                 11  134799999999999875433222211   12334455555  4899999999999999999999999994


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEE
Q 016734          307 KSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGL  340 (384)
Q Consensus       307 ~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~  340 (384)
                       ++ ..+.+++.+.++..   .++..+.-..|++
T Consensus       266 -~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~  294 (307)
T PRK11805        266 -SR-VHLEEAYPDVPFTW---LEFENGGDGVFLL  294 (307)
T ss_pred             -CH-HHHHHHHhhCCCEE---EEecCCCceEEEE
Confidence             43 45888888877543   3444444344443

>PLN02672 methionine S-methyltransferase

Probab=99.93  E-value=1.1e-24  Score=241.22  Aligned_cols=192  Identities=13%  Similarity=0.076  Sum_probs=146.8

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ++|||++|.|.+++|||| |+|+.+++++.. ....       .-+..+|||+|||||||++.|+.+.+..+|+|+|+|+
T Consensus        82 ~~F~~l~~~V~p~VLIPR-peTE~lve~L~~-~~~~-------~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~  152 (1082)
T PLN02672         82 RNRKKLTMMEIPSIFIPE-DWSFTFYEGLNR-HPDS-------IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP  152 (1082)
T ss_pred             EEecCCceeeCCCcccCc-hhHHHHHHHHHh-cccc-------cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH
Confidence            579999999999999999 999999998432 1110       0123589999999999999999998888999999999


Q ss_pred             HHHHHHHHHHHHCCCC---------------CCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHI---------------SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS  214 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l---------------~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (384)
                      +|++.|++|++.|+ +               .++|+++++|..+                                    
T Consensus       153 ~Al~~A~~Na~~n~-l~~~~~~~~~~~~~~l~~rV~f~~sDl~~------------------------------------  195 (1082)
T PLN02672        153 RAVKVAWINLYLNA-LDDDGLPVYDGEGKTLLDRVEFYESDLLG------------------------------------  195 (1082)
T ss_pred             HHHHHHHHHHHHcC-cccccccccccccccccccEEEEECchhh------------------------------------
Confidence            99999999999875 3               3578888887532                                    


Q ss_pred             CCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccc-------cCCCcccccccCc-----hHHH
Q 016734          215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTS-------CGGTPEEMVCSGG-----ERAF  282 (384)
Q Consensus       215 ~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~-------~~g~~~E~~~~GG-----el~F  282 (384)
                                         .+.....+||+|||||||++..+...+.|...       +-.-+..+.+.||     ++.|
T Consensus       196 -------------------~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~  256 (1082)
T PLN02672        196 -------------------YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGL  256 (1082)
T ss_pred             -------------------hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHH
Confidence                               11101236999999999999876443322211       0000122344442     4999


Q ss_pred             HHHHHHHHHHhhccCeEEEEEecCCCCHHHHH-HHHHHcCCeEEEE
Q 016734          283 ITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI-SKLRKVGVTIVKT  327 (384)
Q Consensus       283 v~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~-~~L~~~g~~~v~~  327 (384)
                      +++|+.++..+++.+||+.+++| ..|.+.+. +++++.|+..+.+
T Consensus       257 yr~i~~~a~~~L~pgG~l~lEiG-~~q~~~v~~~l~~~~gf~~~~~  301 (1082)
T PLN02672        257 IARAVEEGISVIKPMGIMIFNMG-GRPGQAVCERLFERRGFRITKL  301 (1082)
T ss_pred             HHHHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHHHCCCCeeEE
Confidence            99999999999999999999999 89999999 6999999765444

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.92  E-value=5.4e-24  Score=203.84  Aligned_cols=183  Identities=14%  Similarity=0.181  Sum_probs=143.8

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ++|+|++|.+++++|+|| |+|+.+++++.+.+...        ....++||+|||+|++++.++...++.+++|+|+|+
T Consensus        50 ~~f~g~~~~v~~~vf~pr-~~Te~Lv~~~l~~~~~~--------~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~  120 (251)
T TIGR03704        50 AEFCGLRIAVDPGVFVPR-RRTEFLVDEAAALARPR--------SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP  120 (251)
T ss_pred             CeEcCeEEEECCCCcCCC-ccHHHHHHHHHHhhccc--------CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH
Confidence            678999999999999999 99999999988765321        123589999999999999999888889999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      .|++.|++|++.|+     ++++.+|..+                                                   
T Consensus       121 ~al~~A~~N~~~~~-----~~~~~~D~~~---------------------------------------------------  144 (251)
T TIGR03704       121 AAVRCARRNLADAG-----GTVHEGDLYD---------------------------------------------------  144 (251)
T ss_pred             HHHHHHHHHHHHcC-----CEEEEeechh---------------------------------------------------
Confidence            99999999999886     3677776432                                                   


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK  307 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~  307 (384)
                       .+...  ..++||+|+|||||++..+....+|...  ..+..+.+.||  ++.++++|++.+..+++.+|++.++++ .
T Consensus       145 -~l~~~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~--~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~  218 (251)
T TIGR03704       145 -ALPTA--LRGRVDILAANAPYVPTDAIALMPPEAR--DHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-E  218 (251)
T ss_pred             -hcchh--cCCCEeEEEECCCCCCchhhhcCCHHHH--hCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-c
Confidence             00000  1247999999999998755433333221  12223344555  589999999999999999999998888 7


Q ss_pred             CCHHHHHHHHHHcCCe
Q 016734          308 SNLKFLISKLRKVGVT  323 (384)
Q Consensus       308 ~~l~~l~~~L~~~g~~  323 (384)
                      ++..++.+.|++.|+.
T Consensus       219 ~~~~~v~~~l~~~g~~  234 (251)
T TIGR03704       219 RQAPLAVEAFARAGLI  234 (251)
T ss_pred             chHHHHHHHHHHCCCC
Confidence            8999999999999984

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.91  E-value=7.3e-23  Score=192.98  Aligned_cols=191  Identities=21%  Similarity=0.288  Sum_probs=156.2

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      .++|+..+.++.++++|+ |+++.++.++.+.+..          ...+|||+|||+|+++..++...++++++|+|+++
T Consensus        53 ~~~~~~~~~~~~~~~~p~-~~~~~l~~~~l~~~~~----------~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~  121 (251)
T TIGR03534        53 REFYGLDFKVSPGVLIPR-PDTEELVEAALERLKK----------GPLRVLDLGTGSGAIALALAKERPDARVTAVDISP  121 (251)
T ss_pred             ceEeceEEEECCCcccCC-CChHHHHHHHHHhccc----------CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH
Confidence            568999999999999999 9999999998877642          23589999999999999999888889999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      .+++.|++|++.++ +. ++.++.+|..+                                                   
T Consensus       122 ~~~~~a~~~~~~~~-~~-~~~~~~~d~~~---------------------------------------------------  148 (251)
T TIGR03534       122 EALAVARKNAARLG-LD-NVTFLQSDWFE---------------------------------------------------  148 (251)
T ss_pred             HHHHHHHHHHHHcC-CC-eEEEEECchhc---------------------------------------------------
Confidence            99999999999987 54 68888877431                                                   


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhhc-------cCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEE
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAG-------LNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS  302 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~-------~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~  302 (384)
                          .+  ..++||+|+|||||+...+...       .+|..++.+...       ++.++..+++++..+++++|++.+
T Consensus       149 ----~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~-------~~~~~~~~i~~~~~~L~~gG~~~~  215 (251)
T TIGR03534       149 ----PL--PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED-------GLDFYRRIIAQAPRLLKPGGWLLL  215 (251)
T ss_pred             ----cC--cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc-------HHHHHHHHHHHHHHhcccCCEEEE
Confidence                01  2468999999999997654322       234333332222       578889999999999999999999


Q ss_pred             EecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEE
Q 016734          303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWG  339 (384)
Q Consensus       303 ~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~  339 (384)
                      ++| ..+.+.+.+.|++.|+..+.+..+..|+ .|++
T Consensus       216 ~~~-~~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~  250 (251)
T TIGR03534       216 EIG-YDQGEAVRALFEAAGFADVETRKDLAGK-DRVV  250 (251)
T ss_pred             EEC-ccHHHHHHHHHHhCCCCceEEEeCCCCC-cCee
Confidence            998 7788999999999999999999988776 6764

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.87  E-value=1.9e-21  Score=185.05  Aligned_cols=155  Identities=26%  Similarity=0.373  Sum_probs=120.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|+++++|+++.+.++++|||+++++.+.|++|++.|+ ++++|+++++|+.+.                
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~----------------  107 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEF----------------  107 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHh----------------
Confidence            679999999999999999999888999999999999999999999997 999999999996531                


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                          ....  ...+||+||||||||+....  +++.....-+.+|..+
T Consensus       108 ------------------------------------~~~~--~~~~fD~Ii~NPPyf~~~~~--~~~~~~~~~Ar~e~~~  147 (248)
T COG4123         108 ------------------------------------LKAL--VFASFDLIICNPPYFKQGSR--LNENPLRAIARHEITL  147 (248)
T ss_pred             ------------------------------------hhcc--cccccCEEEeCCCCCCCccc--cCcChhhhhhhhhhcC
Confidence                                                0111  23479999999999998765  2222222233443322


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCe
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT  335 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t  335 (384)
                      .      ...+++-+..+++++|-+ +||.+..++.+++.+|++.++. .+.+.|++.+.
T Consensus       148 ~------le~~i~~a~~~lk~~G~l-~~V~r~erl~ei~~~l~~~~~~-~k~i~~V~p~~  199 (248)
T COG4123         148 D------LEDLIRAAAKLLKPGGRL-AFVHRPERLAEIIELLKSYNLE-PKRIQFVYPKI  199 (248)
T ss_pred             C------HHHHHHHHHHHccCCCEE-EEEecHHHHHHHHHHHHhcCCC-ceEEEEecCCC
Confidence            2      456667788888888877 6788899999999999999986 55666766654

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.82  E-value=5.8e-19  Score=159.22  Aligned_cols=159  Identities=18%  Similarity=0.255  Sum_probs=117.3

Q ss_pred             cEEEecCCCccCCC--cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           75 LNWWIPDGQLCPTV--PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        75 l~~~vp~~~LiPrv--P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      ++|..++|++.|+-  +.++.+++++...             ...++||+|||+|+|++.++.+.+.++|+++|+++.|+
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~-------------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~   68 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH-------------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL   68 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH-------------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc-------------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence            57889999998663  3455555555533             24589999999999999999999998999999999999


Q ss_pred             HHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcc
Q 016734          153 EWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL  232 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~  232 (384)
                      +.|++|++.|+ +++ ++++.+|..+                                                      
T Consensus        69 ~~a~~n~~~n~-~~~-v~~~~~d~~~------------------------------------------------------   92 (170)
T PF05175_consen   69 ELAKRNAERNG-LEN-VEVVQSDLFE------------------------------------------------------   92 (170)
T ss_dssp             HHHHHHHHHTT-CTT-EEEEESSTTT------------------------------------------------------
T ss_pred             HHHHHHHHhcC-ccc-cccccccccc------------------------------------------------------
Confidence            99999999998 777 9999887532                                                      


Q ss_pred             cccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHH
Q 016734          233 VGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKF  312 (384)
Q Consensus       233 ~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~  312 (384)
                       .+  ..++||+|+|||||....+              .       +..++.++++++..+++++|.+.....+....+.
T Consensus        93 -~~--~~~~fD~Iv~NPP~~~~~~--------------~-------~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~  148 (170)
T PF05175_consen   93 -AL--PDGKFDLIVSNPPFHAGGD--------------D-------GLDLLRDFIEQARRYLKPGGRLFLVINSHLGYER  148 (170)
T ss_dssp             -TC--CTTCEEEEEE---SBTTSH--------------C-------HHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHH
T ss_pred             -cc--cccceeEEEEccchhcccc--------------c-------chhhHHHHHHHHHHhccCCCEEEEEeecCCChHH
Confidence             11  2478999999999654321              1       4678999999999999999998777766666666


Q ss_pred             HHHHHHHcCCeEEEEEEe
Q 016734          313 LISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       313 l~~~L~~~g~~~v~~~e~  330 (384)
                      +++.+    +..++++.-
T Consensus       149 ~l~~~----f~~~~~~~~  162 (170)
T PF05175_consen  149 LLKEL----FGDVEVVAK  162 (170)
T ss_dssp             HHHHH----HS--EEEEE
T ss_pred             HHHHh----cCCEEEEEE
Confidence            63322    234555543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.74  E-value=2.5e-16  Score=147.73  Aligned_cols=172  Identities=18%  Similarity=0.218  Sum_probs=125.9

Q ss_pred             CCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        73 fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      -|+.+.++++++.|. ++++.++.++..+-.          ....+|||+|||+|.++..++.. ...+++|+|+|+.++
T Consensus         5 ~~~~~~~~~g~~~p~-~ds~~l~~~l~~~~~----------~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l   72 (223)
T PRK14967          5 PPDALLRAPGVYRPQ-EDTQLLADALAAEGL----------GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAV   72 (223)
T ss_pred             CCceeecCCCCcCCC-CcHHHHHHHHHhccc----------CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHH
Confidence            477899999999999 788776666554311          12358999999999998887754 334999999999999


Q ss_pred             HHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcc
Q 016734          153 EWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL  232 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~  232 (384)
                      +.|++|++.++ +  ++.++.+|..+                                                      
T Consensus        73 ~~a~~n~~~~~-~--~~~~~~~d~~~------------------------------------------------------   95 (223)
T PRK14967         73 RSARLNALLAG-V--DVDVRRGDWAR------------------------------------------------------   95 (223)
T ss_pred             HHHHHHHHHhC-C--eeEEEECchhh------------------------------------------------------
Confidence            99999999887 4  47777766321                                                      


Q ss_pred             cccccCCCcEEEEEECCCcccchhhh--ccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCH
Q 016734          233 VGVVRDGEQFDFCICNPPFFESMEEA--GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNL  310 (384)
Q Consensus       233 ~~~~~~~~~fD~i~cNPPy~~s~~~~--~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l  310 (384)
                       .+  .+++||+|+|||||++..+..  ...|...+.+...       +..++.++++++..+++.+|.+.+......+.
T Consensus        96 -~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~  165 (223)
T PRK14967         96 -AV--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPD-------GRAVLDRLCDAAPALLAPGGSLLLVQSELSGV  165 (223)
T ss_pred             -hc--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCc-------HHHHHHHHHHHHHHhcCCCcEEEEEEecccCH
Confidence             01  246799999999999765432  1122222222111       35678889999999999999887666656688


Q ss_pred             HHHHHHHHHcCCe
Q 016734          311 KFLISKLRKVGVT  323 (384)
Q Consensus       311 ~~l~~~L~~~g~~  323 (384)
                      ..+.+.+++.|+.
T Consensus       166 ~~~~~~l~~~g~~  178 (223)
T PRK14967        166 ERTLTRLSEAGLD  178 (223)
T ss_pred             HHHHHHHHHCCCC
Confidence            9999999998875

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.70  E-value=1.5e-15  Score=137.43  Aligned_cols=158  Identities=16%  Similarity=0.195  Sum_probs=113.1

Q ss_pred             CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734           83 QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus        83 ~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      +++|+ +++....+.+. ..            ...+|||+|||+|.++..++...+  +++|+|+|+++++.|++|++.+
T Consensus         1 ~~~~~-~d~~~l~~~l~-~~------------~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~   64 (179)
T TIGR00537         1 VYEPA-EDSLLLEANLR-EL------------KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN   64 (179)
T ss_pred             CCCCC-ccHHHHHHHHH-hc------------CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc
Confidence            57889 78743333322 21            235799999999999988886543  8999999999999999999988


Q ss_pred             CCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcE
Q 016734          163 PHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQF  242 (384)
Q Consensus       163 ~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~f  242 (384)
                      + +  .++++.+|..+                                                       .   ..++|
T Consensus        65 ~-~--~~~~~~~d~~~-------------------------------------------------------~---~~~~f   83 (179)
T TIGR00537        65 N-V--GLDVVMTDLFK-------------------------------------------------------G---VRGKF   83 (179)
T ss_pred             C-C--ceEEEEccccc-------------------------------------------------------c---cCCcc
Confidence            6 4  47777776321                                                       0   12479


Q ss_pred             EEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHc
Q 016734          243 DFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV  320 (384)
Q Consensus       243 D~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~  320 (384)
                      |+|+|||||++........+       .......||  +.....+++++..++++.+|.+.+......+..++.+.|++.
T Consensus        84 D~Vi~n~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~  156 (179)
T TIGR00537        84 DVILFNPPYLPLEDDLRRGD-------WLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDER  156 (179)
T ss_pred             cEEEECCCCCCCcchhcccc-------hhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhC
Confidence            99999999997643321111       111223333  245578899999999999998877666566799999999999


Q ss_pred             CCeE
Q 016734          321 GVTI  324 (384)
Q Consensus       321 g~~~  324 (384)
                      |+..
T Consensus       157 gf~~  160 (179)
T TIGR00537       157 GFRY  160 (179)
T ss_pred             CCeE
Confidence            9863

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK14968 putative methyltransferase; Provisional

Probab=99.64  E-value=1.8e-14  Score=129.67  Aligned_cols=167  Identities=22%  Similarity=0.283  Sum_probs=120.2

Q ss_pred             cCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHH
Q 016734           80 PDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (384)
Q Consensus        80 p~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni  159 (384)
                      .++++.|+ +++..++.++..             ....++||+|||+|.++..++..  +.+++|+|+++++++.|++|+
T Consensus         2 ~~~~~~p~-~~~~~l~~~~~~-------------~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~   65 (188)
T PRK14968          2 NDEVYEPA-EDSFLLAENAVD-------------KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNA   65 (188)
T ss_pred             CCcccCcc-hhHHHHHHhhhc-------------cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHH
Confidence            46788888 666555554432             12458999999999999888876  689999999999999999999


Q ss_pred             HHCCCCCCc-eEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccC
Q 016734          160 KSNPHISEL-IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRD  238 (384)
Q Consensus       160 ~~n~~l~~~-I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~  238 (384)
                      ..++ +.++ +.++.+|..+                                                       .+  .
T Consensus        66 ~~~~-~~~~~~~~~~~d~~~-------------------------------------------------------~~--~   87 (188)
T PRK14968         66 KLNN-IRNNGVEVIRSDLFE-------------------------------------------------------PF--R   87 (188)
T ss_pred             HHcC-CCCcceEEEeccccc-------------------------------------------------------cc--c
Confidence            9887 5544 7777776321                                                       11  1


Q ss_pred             CCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHH
Q 016734          239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISK  316 (384)
Q Consensus       239 ~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~  316 (384)
                      ...||+|++||||++.......++       .......+|  ....+..+++++..+++.+|++...++.....+.+.+.
T Consensus        88 ~~~~d~vi~n~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~  160 (188)
T PRK14968         88 GDKFDVILFNPPYLPTEEEEEWDD-------WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEY  160 (188)
T ss_pred             ccCceEEEECCCcCCCCchhhhhh-------hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHH
Confidence            237999999999987542211111       111222233  24567888999989999999988888766778999999


Q ss_pred             HHHcCCeEEEE
Q 016734          317 LRKVGVTIVKT  327 (384)
Q Consensus       317 L~~~g~~~v~~  327 (384)
                      +.+.|+....+
T Consensus       161 ~~~~g~~~~~~  171 (188)
T PRK14968        161 LEKLGFEAEVV  171 (188)
T ss_pred             HHHCCCeeeee
Confidence            99999865444

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.64  E-value=9e-15  Score=147.81  Aligned_cols=142  Identities=17%  Similarity=0.127  Sum_probs=100.6

Q ss_pred             CCcEEEecCCCccCCCcC--HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           73 HGLNWWIPDGQLCPTVPN--RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        73 fgl~~~vp~~~LiPrvP~--r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      .++++.-.+||+...=-+  +..++.    .+..         ....+|||+|||+|+|++.++++.|.++|+++|+|+.
T Consensus       197 ~~~~~~~~~gVFs~~~LD~GtrllL~----~lp~---------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~  263 (378)
T PRK15001        197 TDWTIHNHANVFSRTGLDIGARFFMQ----HLPE---------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPM  263 (378)
T ss_pred             ceEEEEecCCccCCCCcChHHHHHHH----hCCc---------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHH
Confidence            345566677888865211  322222    2211         1235899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCC--CceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCC
Q 016734          151 ALEWAEKNVKSNPHIS--ELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG  228 (384)
Q Consensus       151 al~~A~~Ni~~n~~l~--~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  228 (384)
                      |++.|++|++.|+ .+  .+++++.+|..+                                                  
T Consensus       264 Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~--------------------------------------------------  292 (378)
T PRK15001        264 AVASSRLNVETNM-PEALDRCEFMINNALS--------------------------------------------------  292 (378)
T ss_pred             HHHHHHHHHHHcC-cccCceEEEEEccccc--------------------------------------------------
Confidence            9999999999986 43  367777665321                                                  


Q ss_pred             CCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecC
Q 016734          229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGR  306 (384)
Q Consensus       229 ~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk  306 (384)
                           .+  ..++||+|+|||||+.....           .          -....+|+.++.+.++++|++.+...+
T Consensus       293 -----~~--~~~~fDlIlsNPPfh~~~~~-----------~----------~~ia~~l~~~a~~~LkpGG~L~iV~nr  342 (378)
T PRK15001        293 -----GV--EPFRFNAVLCNPPFHQQHAL-----------T----------DNVAWEMFHHARRCLKINGELYIVANR  342 (378)
T ss_pred             -----cC--CCCCEEEEEECcCcccCccC-----------C----------HHHHHHHHHHHHHhcccCCEEEEEEec
Confidence                 11  23579999999999853210           0          123568899999999999988666543

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=5.8e-15  Score=143.74  Aligned_cols=128  Identities=21%  Similarity=0.203  Sum_probs=94.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||.|.|++.|++..|..+++-+|+|..|++.|++|++.|+ ++.. .++.++.                   
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~-------------------  217 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNL-------------------  217 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEecc-------------------
Confidence            348999999999999999999999999999999999999999999997 6654 5665553                   


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                          +.++   .++||+|+|||||+...+.                  
T Consensus       218 ------------------------------------~~~v---~~kfd~IisNPPfh~G~~v------------------  240 (300)
T COG2813         218 ------------------------------------YEPV---EGKFDLIISNPPFHAGKAV------------------  240 (300)
T ss_pred             ------------------------------------cccc---cccccEEEeCCCccCCcch------------------
Confidence                                                2222   3499999999999964321                  


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEE
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT  328 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~  328 (384)
                         ......+||.++...++.+|-+. +|..  .......+|++. |.+++++
T Consensus       241 ---~~~~~~~~i~~A~~~L~~gGeL~-iVan--~~l~y~~~L~~~-Fg~v~~l  286 (300)
T COG2813         241 ---VHSLAQEIIAAAARHLKPGGELW-IVAN--RHLPYEKKLKEL-FGNVEVL  286 (300)
T ss_pred             ---hHHHHHHHHHHHHHhhccCCEEE-EEEc--CCCChHHHHHHh-cCCEEEE
Confidence               23456789999999999888663 4442  333344444443 3344444

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.63  E-value=3.6e-15  Score=124.60  Aligned_cols=115  Identities=18%  Similarity=0.237  Sum_probs=85.9

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccccc
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~  196 (384)
                      .+|||+|||+|.+...++... ..+++|+|+|+.+++.|+.|+..++ +.++++++.+|..+                  
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~------------------   61 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARD------------------   61 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHH------------------
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhh------------------
Confidence            479999999999998888776 7899999999999999999999997 88899999988432                  


Q ss_pred             ccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccccc
Q 016734          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~  276 (384)
                                                        +....  ..++||+|+|||||.........         .      
T Consensus        62 ----------------------------------~~~~~--~~~~~D~Iv~npP~~~~~~~~~~---------~------   90 (117)
T PF13659_consen   62 ----------------------------------LPEPL--PDGKFDLIVTNPPYGPRSGDKAA---------L------   90 (117)
T ss_dssp             ----------------------------------HHHTC--TTT-EEEEEE--STTSBTT-------------G------
T ss_pred             ----------------------------------chhhc--cCceeEEEEECCCCccccccchh---------h------
Confidence                                              00001  35789999999999875322110         0      


Q ss_pred             CchHHHHHHHHHHHHHhhccCeEEEEEec
Q 016734          277 GGERAFITRIIEDSVALKQTFRWYTSMVG  305 (384)
Q Consensus       277 GGel~Fv~~ii~eS~~l~~~~~w~t~~vg  305 (384)
                         -.....+++++.++++++|.+.+.++
T Consensus        91 ---~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   91 ---RRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             ---GCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence               01566778888899999999877653

...

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.5e-13  Score=124.58  Aligned_cols=165  Identities=18%  Similarity=0.250  Sum_probs=122.0

Q ss_pred             cCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734           85 CPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus        85 iPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      =|. -+|-.+++.++.-...-.      ......++|||||||++...|++.. +++...++||+|+|+++..+.++.|+
T Consensus        20 EPa-EDTFlLlDaLekd~~eL~------~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~   92 (209)
T KOG3191|consen   20 EPA-EDTFLLLDALEKDAAELK------GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR   92 (209)
T ss_pred             Ccc-chhhHHHHHHHHHHHHHh------hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC
Confidence            344 556666665553222110      1235689999999999999998764 67889999999999999999999997


Q ss_pred             CCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEE
Q 016734          164 HISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFD  243 (384)
Q Consensus       164 ~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD  243 (384)
                       .  ++.++..|..                                                       .++  ..++.|
T Consensus        93 -~--~~~~V~tdl~-------------------------------------------------------~~l--~~~~VD  112 (209)
T KOG3191|consen   93 -V--HIDVVRTDLL-------------------------------------------------------SGL--RNESVD  112 (209)
T ss_pred             -C--ccceeehhHH-------------------------------------------------------hhh--ccCCcc
Confidence             2  4777777642                                                       233  238899


Q ss_pred             EEEECCCcccchhhhccCCccccCCCcccccccCch--HHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcC
Q 016734          244 FCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGE--RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       244 ~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGe--l~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g  321 (384)
                      +++-||||.++.++...       ...-+....||.  .....+++.+...++.+.|||+...-+....+++++.|++.|
T Consensus       113 vLvfNPPYVpt~~~~i~-------~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g  185 (209)
T KOG3191|consen  113 VLVFNPPYVPTSDEEIG-------DEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKG  185 (209)
T ss_pred             EEEECCCcCcCCcccch-------hHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcc
Confidence            99999999998654321       111233445664  677899999999999999999877777788999999999999


Q ss_pred             Ce
Q 016734          322 VT  323 (384)
Q Consensus       322 ~~  323 (384)
                      +.
T Consensus       186 ~~  187 (209)
T KOG3191|consen  186 YG  187 (209)
T ss_pred             cc
Confidence            85

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.51  E-value=4.4e-13  Score=134.08  Aligned_cols=147  Identities=19%  Similarity=0.180  Sum_probs=102.0

Q ss_pred             CcEEEecCCCccCCCc--CHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           74 GLNWWIPDGQLCPTVP--NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        74 gl~~~vp~~~LiPrvP--~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      ++.+...+|++-+.-.  .+..++..    +..         ....+|||+|||+|.++..++.+.++.+++++|+|+.|
T Consensus       166 ~l~i~~~pgvFs~~~lD~gt~lLl~~----l~~---------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~A  232 (342)
T PRK09489        166 GLTVKTLPGVFSRDGLDVGSQLLLST----LTP---------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAA  232 (342)
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHh----ccc---------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHH
Confidence            4567777788776522  23333332    211         12347999999999999999988888999999999999


Q ss_pred             HHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCc
Q 016734          152 LEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPV  231 (384)
Q Consensus       152 l~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i  231 (384)
                      ++.|++|++.|+ +.  .+++.+|..                                                      
T Consensus       233 l~~A~~nl~~n~-l~--~~~~~~D~~------------------------------------------------------  255 (342)
T PRK09489        233 LESSRATLAANG-LE--GEVFASNVF------------------------------------------------------  255 (342)
T ss_pred             HHHHHHHHHHcC-CC--CEEEEcccc------------------------------------------------------
Confidence            999999999997 54  355555421                                                      


Q ss_pred             ccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHH
Q 016734          232 LVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLK  311 (384)
Q Consensus       232 ~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~  311 (384)
                       ..   ..++||+|+|||||+.....                     ...-..+++.++.++++++|.+.....+.-..+
T Consensus       256 -~~---~~~~fDlIvsNPPFH~g~~~---------------------~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~  310 (342)
T PRK09489        256 -SD---IKGRFDMIISNPPFHDGIQT---------------------SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP  310 (342)
T ss_pred             -cc---cCCCccEEEECCCccCCccc---------------------cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence             11   13679999999999853210                     134568889999999999998854443333344


Q ss_pred             HHHH
Q 016734          312 FLIS  315 (384)
Q Consensus       312 ~l~~  315 (384)
                      .+++
T Consensus       311 ~~l~  314 (342)
T PRK09489        311 DLLD  314 (342)
T ss_pred             HHHH
Confidence            4443

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.48  E-value=3.5e-13  Score=125.22  Aligned_cols=93  Identities=11%  Similarity=0.001  Sum_probs=71.8

Q ss_pred             ccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      .++|+.+.+|++--. | |.+....+.+.+.+...        ....++||+|||+|++++.++.+. ..+|+++|++++
T Consensus        19 ~~~g~~l~~~~~~~~-R-p~~d~v~e~l~~~l~~~--------~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~   87 (199)
T PRK10909         19 QWRGRKLPVPDSPGL-R-PTTDRVRETLFNWLAPV--------IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA   87 (199)
T ss_pred             ccCCCEeCCCCCCCc-C-cCCHHHHHHHHHHHhhh--------cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence            378999999886422 6 77777777776666421        123589999999999998654443 369999999999


Q ss_pred             HHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          151 ALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       151 al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +++.|++|++.++ ++ ++.++.+|.
T Consensus        88 a~~~a~~Nl~~~~-~~-~v~~~~~D~  111 (199)
T PRK10909         88 VAQQLIKNLATLK-AG-NARVVNTNA  111 (199)
T ss_pred             HHHHHHHHHHHhC-CC-cEEEEEchH
Confidence            9999999999997 65 689988874

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2.5e-12  Score=117.57  Aligned_cols=134  Identities=25%  Similarity=0.313  Sum_probs=99.4

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      +....|+.|++.+...         -+...|+|+|||||.+++..+  ..+ .+|+|+|+|++|++.|++|+.++   .+
T Consensus        28 ~~~Aa~il~~a~~~g~---------l~g~~V~DlG~GTG~La~ga~--~lGa~~V~~vdiD~~a~ei~r~N~~~l---~g   93 (198)
T COG2263          28 APLAAYILWVAYLRGD---------LEGKTVLDLGAGTGILAIGAA--LLGASRVLAVDIDPEALEIARANAEEL---LG   93 (198)
T ss_pred             hHHHHHHHHHHHHcCC---------cCCCEEEEcCCCcCHHHHHHH--hcCCcEEEEEecCHHHHHHHHHHHHhh---CC
Confidence            4677889998885432         245579999999999875544  444 58999999999999999999984   35


Q ss_pred             ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734          168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC  247 (384)
Q Consensus       168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c  247 (384)
                      +|.++.+|+.+                                                           -...||.++.
T Consensus        94 ~v~f~~~dv~~-----------------------------------------------------------~~~~~dtvim  114 (198)
T COG2263          94 DVEFVVADVSD-----------------------------------------------------------FRGKFDTVIM  114 (198)
T ss_pred             ceEEEEcchhh-----------------------------------------------------------cCCccceEEE
Confidence            79999988542                                                           1357899999


Q ss_pred             CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCe
Q 016734          248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT  323 (384)
Q Consensus       248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~  323 (384)
                      ||||-.....                    -+..|+..-++-|       .+.+ -+++..+...+.+....+|.+
T Consensus       115 NPPFG~~~rh--------------------aDr~Fl~~Ale~s-------~vVY-siH~a~~~~f~~~~~~~~G~~  162 (198)
T COG2263         115 NPPFGSQRRH--------------------ADRPFLLKALEIS-------DVVY-SIHKAGSRDFVEKFAADLGGT  162 (198)
T ss_pred             CCCCcccccc--------------------CCHHHHHHHHHhh-------heEE-EeeccccHHHHHHHHHhcCCe
Confidence            9999764221                    1467887665555       2333 345577899999999999964

>PHA03412 putative methyltransferase; Provisional

Probab=99.43  E-value=7.9e-13  Score=125.52  Aligned_cols=106  Identities=15%  Similarity=0.149  Sum_probs=76.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhc---cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcc
Q 016734          116 KVKGFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSV  192 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~---~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~  192 (384)
                      ..+|||+|||+|++++.++.+.   +..+|+|+|||+.|+++|++|+.       ++.++++|...              
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~--------------  108 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALT--------------  108 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhc--------------
Confidence            4689999999999999888764   35699999999999999998852       26777776431              


Q ss_pred             ccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccc
Q 016734          193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE  272 (384)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E  272 (384)
                                                             . .   ..++||+|||||||++.....       .++... 
T Consensus       109 ---------------------------------------~-~---~~~~FDlIIsNPPY~~~~~~d-------~~ar~~-  137 (241)
T PHA03412        109 ---------------------------------------T-E---FDTLFDMAISNPPFGKIKTSD-------FKGKYT-  137 (241)
T ss_pred             ---------------------------------------c-c---ccCCccEEEECCCCCCccccc-------cCCccc-
Confidence                                                   0 0   135899999999999843100       011111 


Q ss_pred             ccccCchHHHHHHHHHHHHHhhccCeE
Q 016734          273 MVCSGGERAFITRIIEDSVALKQTFRW  299 (384)
Q Consensus       273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w  299 (384)
                            +..+..++++.+.+++..+++
T Consensus       138 ------g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        138 ------GAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             ------ccHHHHHHHHHHHHHcCCCEE
Confidence                  366788888888887777775

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.40  E-value=1.5e-11  Score=122.21  Aligned_cols=143  Identities=22%  Similarity=0.240  Sum_probs=103.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ...+||+|||+|.+.+.++  ..+.+++|+|+|+.+++.|+.|++.++ +.+ +.++.+|..+                 
T Consensus       183 g~~vLDp~cGtG~~lieaa--~~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~-----------------  241 (329)
T TIGR01177       183 GDRVLDPFCGTGGFLIEAG--LMGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATK-----------------  241 (329)
T ss_pred             cCEEEECCCCCCHHHHHHH--HhCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhc-----------------
Confidence            4589999999999876554  357899999999999999999999987 665 7888877432                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                          + ..  ..+.||+|+|||||-......         +.      
T Consensus       242 ------------------------------------l-~~--~~~~~D~Iv~dPPyg~~~~~~---------~~------  267 (329)
T TIGR01177       242 ------------------------------------L-PL--SSESVDAIATDPPYGRSTTAA---------GD------  267 (329)
T ss_pred             ------------------------------------C-Cc--ccCCCCEEEECCCCcCccccc---------CC------
Confidence                                                0 00  246799999999997532110         00      


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEe-eCCCeeEEE
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF-VQGQTCRWG  339 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~-~qG~t~Rw~  339 (384)
                        ....++.++++++.+.++++||+...+....   ++.+.++++|+ .+..... +.|.=+|.+
T Consensus       268 --~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~-i~~~~~~~~h~sl~r~i  326 (329)
T TIGR01177       268 --GLESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR-VVKRFEVRVHRSLTRHI  326 (329)
T ss_pred             --chHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc-chheeeeeeecceEEEE
Confidence              0135678899999999999999987776443   44566888998 6666553 444445543

This family is found exclusively in the Archaea.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=9.4e-12  Score=121.79  Aligned_cols=142  Identities=20%  Similarity=0.258  Sum_probs=101.8

Q ss_pred             CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      +|.|...+.|+.+++.           .+.++||+|||||.++++.+ ++--.+++|+|+||.|++.|++|++.|+ +..
T Consensus       146 HpTT~lcL~~Le~~~~-----------~g~~vlDvGcGSGILaIAa~-kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~  212 (300)
T COG2264         146 HPTTSLCLEALEKLLK-----------KGKTVLDVGCGSGILAIAAA-KLGAKKVVGVDIDPQAVEAARENARLNG-VEL  212 (300)
T ss_pred             ChhHHHHHHHHHHhhc-----------CCCEEEEecCChhHHHHHHH-HcCCceEEEecCCHHHHHHHHHHHHHcC-Cch
Confidence            6889999999998875           35689999999999876654 3333479999999999999999999998 553


Q ss_pred             ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734          168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC  247 (384)
Q Consensus       168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c  247 (384)
                      .+..-..+                                                       ....  ...++||+|||
T Consensus       213 ~~~~~~~~-------------------------------------------------------~~~~--~~~~~~DvIVA  235 (300)
T COG2264         213 LVQAKGFL-------------------------------------------------------LLEV--PENGPFDVIVA  235 (300)
T ss_pred             hhhccccc-------------------------------------------------------chhh--cccCcccEEEe
Confidence            12111000                                                       0001  13468999999


Q ss_pred             CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEec-CCCCHHHHHHHHHHcCCeEEE
Q 016734          248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG-RKSNLKFLISKLRKVGVTIVK  326 (384)
Q Consensus       248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg-k~~~l~~l~~~L~~~g~~~v~  326 (384)
                      |=  .                           -..+.+|..+...+.+++|++. +=| -.++.+.+.+.+.+.|+..+.
T Consensus       236 NI--L---------------------------A~vl~~La~~~~~~lkpgg~lI-lSGIl~~q~~~V~~a~~~~gf~v~~  285 (300)
T COG2264         236 NI--L---------------------------AEVLVELAPDIKRLLKPGGRLI-LSGILEDQAESVAEAYEQAGFEVVE  285 (300)
T ss_pred             hh--h---------------------------HHHHHHHHHHHHHHcCCCceEE-EEeehHhHHHHHHHHHHhCCCeEeE
Confidence            93  0                           1235677788888888888863 223 245789999999999998666


Q ss_pred             EEE
Q 016734          327 TTE  329 (384)
Q Consensus       327 ~~e  329 (384)
                      +.+
T Consensus       286 ~~~  288 (300)
T COG2264         286 VLE  288 (300)
T ss_pred             EEe
Confidence            554

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.37  E-value=6.4e-12  Score=136.52  Aligned_cols=145  Identities=21%  Similarity=0.153  Sum_probs=104.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCC-CceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~-~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|++++.++.. ...+|+++|+|+.|++.|++|++.|+ +. ++++++++|..+                
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~----------------  600 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLA----------------  600 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHH----------------
Confidence            458999999999999888764 23379999999999999999999998 76 689999988431                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          ++..   ..++||+|||||||+.......    ..+        
T Consensus       601 ------------------------------------~l~~---~~~~fDlIilDPP~f~~~~~~~----~~~--------  629 (702)
T PRK11783        601 ------------------------------------WLKE---AREQFDLIFIDPPTFSNSKRME----DSF--------  629 (702)
T ss_pred             ------------------------------------HHHH---cCCCcCEEEECCCCCCCCCccc----hhh--------
Confidence                                                1111   1457999999999997532110    000        


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCC
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQG  333 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG  333 (384)
                         .....+..++..+..+++++|++.+... ..++....+.+.+.|+..-.+.+..|+
T Consensus       630 ---~~~~~y~~l~~~a~~lL~~gG~l~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~  684 (702)
T PRK11783        630 ---DVQRDHVALIKDAKRLLRPGGTLYFSNN-KRGFKMDEEGLAKLGLKAEEITAKTLP  684 (702)
T ss_pred             ---hHHHHHHHHHHHHHHHcCCCCEEEEEeC-CccCChhHHHHHhCCCeEEEEecCCCC
Confidence               0234577788888888888988755444 556666688888888764444444444

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.36  E-value=5.5e-12  Score=128.54  Aligned_cols=134  Identities=17%  Similarity=0.083  Sum_probs=92.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCC-CceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~-~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|.+++.++. ....+|+++|+|+.+++.|++|++.|+ +. ++++++.+|..+                
T Consensus       221 g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~----------------  282 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFK----------------  282 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHH----------------
Confidence            46899999999998766543 233499999999999999999999998 75 579999988532                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          ++..+....++||+|+||||||...... +              
T Consensus       283 ------------------------------------~l~~~~~~~~~fDlVilDPP~f~~~k~~-l--------------  311 (396)
T PRK15128        283 ------------------------------------LLRTYRDRGEKFDVIVMDPPKFVENKSQ-L--------------  311 (396)
T ss_pred             ------------------------------------HHHHHHhcCCCCCEEEECCCCCCCChHH-H--------------
Confidence                                                1111111246899999999999753211 0              


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEE-EEEecCCCCHHHHHHHHHHc
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLRKV  320 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~-t~~vgk~~~l~~l~~~L~~~  320 (384)
                       . +.+.-+..++..+..+++++|++ ++.....-+.+.+.+.+.+.
T Consensus       312 -~-~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~a  356 (396)
T PRK15128        312 -M-GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADA  356 (396)
T ss_pred             -H-HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence             0 01223667778888888888865 44554445566666665543

>PHA03411 putative methyltransferase; Provisional

Probab=99.36  E-value=5.2e-12  Score=122.37  Aligned_cols=133  Identities=16%  Similarity=0.094  Sum_probs=91.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.++..++.+.++.+++|+|+|+.+++.|++|..       ++.++.+|..+                 
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~~e-----------------  120 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDVFE-----------------  120 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECchhh-----------------
Confidence            458999999999998888777667899999999999999998731       47788877431                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         +.     ..++||+|+|||||+.......          ......
T Consensus       121 -----------------------------------~~-----~~~kFDlIIsNPPF~~l~~~d~----------~~~~~~  150 (279)
T PHA03411        121 -----------------------------------FE-----SNEKFDVVISNPPFGKINTTDT----------KDVFEY  150 (279)
T ss_pred             -----------------------------------hc-----ccCCCcEEEEcCCccccCchhh----------hhhhhh
Confidence                                               00     1357999999999997432221          111334


Q ss_pred             cCch--HHH--HHHHHHHHHHhhccCeEEEEEec-CC-----CCHHHHHHHHHHcCC
Q 016734          276 SGGE--RAF--ITRIIEDSVALKQTFRWYTSMVG-RK-----SNLKFLISKLRKVGV  322 (384)
Q Consensus       276 ~GGe--l~F--v~~ii~eS~~l~~~~~w~t~~vg-k~-----~~l~~l~~~L~~~g~  322 (384)
                      .||+  ..+  +.+++.....++...|++.+..+ +.     -.-.+..++|++.|+
T Consensus       151 ~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~  207 (279)
T PHA03411        151 TGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGL  207 (279)
T ss_pred             ccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCc
Confidence            4454  222  46777777777777766543333 11     124777889999886

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.36  E-value=2.3e-11  Score=111.34  Aligned_cols=126  Identities=18%  Similarity=0.201  Sum_probs=93.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.++..++...++.+|+|+|+|+.+++.|++|++.++ +. +|+++++|..+                 
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~~-~i~~i~~d~~~-----------------  103 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-LN-NVEIVNGRAED-----------------  103 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-CC-CeEEEecchhh-----------------
Confidence            468999999999999988877788899999999999999999999987 65 49999887421                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         +     ...++||+|+||. +. .                     
T Consensus       104 -----------------------------------~-----~~~~~fD~I~s~~-~~-~---------------------  120 (181)
T TIGR00138       104 -----------------------------------F-----QHEEQFDVITSRA-LA-S---------------------  120 (181)
T ss_pred             -----------------------------------c-----cccCCccEEEehh-hh-C---------------------
Confidence                                               0     0246799999985 11 0                     


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHH---cCCeEEEEEEee
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK---VGVTIVKTTEFV  331 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~---~g~~~v~~~e~~  331 (384)
                             +..+++....+++.+|.+....| .....++....++   .|+..+.+-++.
T Consensus       121 -------~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~  171 (181)
T TIGR00138       121 -------LNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKRKCQVLGVEPLEVPPLT  171 (181)
T ss_pred             -------HHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHHhhhhcCceEeeccccC
Confidence                   22333444566778888877777 6666666666655   787776665543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.35  E-value=1.4e-11  Score=120.91  Aligned_cols=138  Identities=18%  Similarity=0.255  Sum_probs=98.4

Q ss_pred             CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      +|.|...++++.++..           ...+|||+|||||.++++.++ +-..+|+|+|+||.|++.|++|++.|+ +++
T Consensus       145 H~TT~lcl~~l~~~~~-----------~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~  211 (295)
T PF06325_consen  145 HPTTRLCLELLEKYVK-----------PGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNG-VED  211 (295)
T ss_dssp             CHHHHHHHHHHHHHSS-----------TTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT--TT
T ss_pred             CHHHHHHHHHHHHhcc-----------CCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcC-CCe
Confidence            7889999999988753           235999999999998765543 333489999999999999999999998 888


Q ss_pred             ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734          168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC  247 (384)
Q Consensus       168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c  247 (384)
                      ++.+....                                                          ..  ..++||+|++
T Consensus       212 ~~~v~~~~----------------------------------------------------------~~--~~~~~dlvvA  231 (295)
T PF06325_consen  212 RIEVSLSE----------------------------------------------------------DL--VEGKFDLVVA  231 (295)
T ss_dssp             CEEESCTS----------------------------------------------------------CT--CCS-EEEEEE
T ss_pred             eEEEEEec----------------------------------------------------------cc--ccccCCEEEE
Confidence            77653100                                                          00  1378999999


Q ss_pred             CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEE-EEecCCCCHHHHHHHHHHcCCeEEE
Q 016734          248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVK  326 (384)
Q Consensus       248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t-~~vgk~~~l~~l~~~L~~~g~~~v~  326 (384)
                      |=                             -...+..|+.+...+++++|++. +=+= ..+...+.+.+++ |+..++
T Consensus       232 NI-----------------------------~~~vL~~l~~~~~~~l~~~G~lIlSGIl-~~~~~~v~~a~~~-g~~~~~  280 (295)
T PF06325_consen  232 NI-----------------------------LADVLLELAPDIASLLKPGGYLILSGIL-EEQEDEVIEAYKQ-GFELVE  280 (295)
T ss_dssp             ES------------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEE-GGGHHHHHHHHHT-TEEEEE
T ss_pred             CC-----------------------------CHHHHHHHHHHHHHhhCCCCEEEEcccc-HHHHHHHHHHHHC-CCEEEE
Confidence            93                             01235667777777788888763 2222 5688999999977 987655


Q ss_pred             EEE
Q 016734          327 TTE  329 (384)
Q Consensus       327 ~~e  329 (384)
                      ..+
T Consensus       281 ~~~  283 (295)
T PF06325_consen  281 ERE  283 (295)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.35  E-value=4.6e-11  Score=108.88  Aligned_cols=128  Identities=16%  Similarity=0.061  Sum_probs=97.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|.++..++...++.+++|+|+++.+++.|++|++.++ +. +++++.++...                 
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~~-~i~~~~~d~~~-----------------   92 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-CG-NIDIIPGEAPI-----------------   92 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CC-CeEEEecCchh-----------------
Confidence            458999999999999999988888999999999999999999999887 64 58888765210                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                            .   ..++||+|+++-..                        
T Consensus        93 --------------------------------------~---~~~~~D~v~~~~~~------------------------  107 (187)
T PRK08287         93 --------------------------------------E---LPGKADAIFIGGSG------------------------  107 (187)
T ss_pred             --------------------------------------h---cCcCCCEEEECCCc------------------------
Confidence                                                  0   12469999986210                        


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeC
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ  332 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~q  332 (384)
                           ..+..+++.+...++.+|++....-...+..++.+.+++.|+..+++.+...
T Consensus       108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  159 (187)
T PRK08287        108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQV  159 (187)
T ss_pred             -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEE
Confidence                 0134456667777888888765443477889999999999998777766553

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.34  E-value=3.2e-11  Score=111.11  Aligned_cols=125  Identities=12%  Similarity=0.147  Sum_probs=98.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|.++..++...++.+|+|+|+++.+++.|++|++.++ +++ ++++++|..+                 
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~~-i~~~~~d~~~-----------------  106 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-LKN-VTVVHGRAEE-----------------  106 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-CCC-EEEEeccHhh-----------------
Confidence            568999999999999999988889999999999999999999999998 765 9998887421                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                             +. ..++||+|+||-  +               +       
T Consensus       107 ---------------------------------------~~-~~~~fDlV~~~~--~---------------~-------  122 (187)
T PRK00107        107 ---------------------------------------FG-QEEKFDVVTSRA--V---------------A-------  122 (187)
T ss_pred             ---------------------------------------CC-CCCCccEEEEcc--c---------------c-------
Confidence                                                   00 135799999972  0               0       


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEe
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~  330 (384)
                            -+..+++++.++++.+|.+.++.+ ......+.++.+..|..--++++.
T Consensus       123 ------~~~~~l~~~~~~LkpGG~lv~~~~-~~~~~~l~~~~~~~~~~~~~~~~~  170 (187)
T PRK00107        123 ------SLSDLVELCLPLLKPGGRFLALKG-RDPEEEIAELPKALGGKVEEVIEL  170 (187)
T ss_pred             ------CHHHHHHHHHHhcCCCeEEEEEeC-CChHHHHHHHHHhcCceEeeeEEE
Confidence                  034566777788899999988887 577888888888888764444443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.34  E-value=2.7e-11  Score=100.12  Aligned_cols=60  Identities=23%  Similarity=0.292  Sum_probs=55.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...+++..++++++|+|+|+++++.|++++...+ ..++|+++++|.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~   61 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA   61 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc
Confidence            358999999999999999988899999999999999999999997776 788999999875

...

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.33  E-value=5.4e-11  Score=113.74  Aligned_cols=135  Identities=14%  Similarity=0.091  Sum_probs=94.7

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~  168 (384)
                      |.|...++++...+.           ...+|||+|||+|.+++.++.. ...+++|+|+|+.+++.|++|++.|+ +.++
T Consensus       104 ~tt~~~l~~l~~~~~-----------~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~-~~~~  170 (250)
T PRK00517        104 PTTRLCLEALEKLVL-----------PGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNG-VELN  170 (250)
T ss_pred             HHHHHHHHHHHhhcC-----------CCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC-CCce
Confidence            455555666554431           3468999999999887765543 33369999999999999999999987 5443


Q ss_pred             eEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEEC
Q 016734          169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN  248 (384)
Q Consensus       169 I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cN  248 (384)
                      +.+..+                                                                +.+||+|+||
T Consensus       171 ~~~~~~----------------------------------------------------------------~~~fD~Vvan  186 (250)
T PRK00517        171 VYLPQG----------------------------------------------------------------DLKADVIVAN  186 (250)
T ss_pred             EEEccC----------------------------------------------------------------CCCcCEEEEc
Confidence            332111                                                                1269999999


Q ss_pred             CCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEE
Q 016734          249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT  328 (384)
Q Consensus       249 PPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~  328 (384)
                      ..                             ...+..++.+...+++++|++...--...+.+.+.+.+++.|+..+.+.
T Consensus       187 i~-----------------------------~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~  237 (250)
T PRK00517        187 IL-----------------------------ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVL  237 (250)
T ss_pred             Cc-----------------------------HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEE
Confidence            41                             0124567778888888888875432225678899999999999866655


Q ss_pred             E
Q 016734          329 E  329 (384)
Q Consensus       329 e  329 (384)
                      +
T Consensus       238 ~  238 (250)
T PRK00517        238 E  238 (250)
T ss_pred             E
Confidence            4

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.32  E-value=3.6e-11  Score=124.09  Aligned_cols=94  Identities=13%  Similarity=0.126  Sum_probs=75.3

Q ss_pred             ccCCcEEEecCCCccCCC-cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           71 HDHGLNWWIPDGQLCPTV-PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrv-P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      +++|++|.+.++.+.-.- ..++.++.++.+.+..         ....+|||+|||+|++++.|+...  .+|+|+|+|+
T Consensus       261 ~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~---------~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~  329 (443)
T PRK13168        261 PEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP---------QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVE  329 (443)
T ss_pred             EcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC---------CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCH
Confidence            456889999999886432 3367788888877642         123589999999999999988664  6999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .|++.|++|++.|+ +. +++++.+|..
T Consensus       330 ~al~~A~~n~~~~~-~~-~v~~~~~d~~  355 (443)
T PRK13168        330 AMVERARENARRNG-LD-NVTFYHANLE  355 (443)
T ss_pred             HHHHHHHHHHHHcC-CC-ceEEEEeChH
Confidence            99999999999997 64 5999998853

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.27  E-value=2.7e-10  Score=111.35  Aligned_cols=139  Identities=20%  Similarity=0.245  Sum_probs=97.2

Q ss_pred             CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      .|.|...+.++..+..           ...+|||+|||+|.++..++. ....+|+|+|+|+.|++.|++|+..|+ +.+
T Consensus       143 h~tt~l~l~~l~~~~~-----------~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~-~~~  209 (288)
T TIGR00406       143 HPTTSLCLEWLEDLDL-----------KDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQ-VSD  209 (288)
T ss_pred             CHHHHHHHHHHHhhcC-----------CCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcC-CCc
Confidence            4555555555554331           236899999999998876664 444599999999999999999999997 777


Q ss_pred             ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734          168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC  247 (384)
Q Consensus       168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c  247 (384)
                      ++.++..+...                                                       .   ..++||+|+|
T Consensus       210 ~~~~~~~~~~~-------------------------------------------------------~---~~~~fDlVva  231 (288)
T TIGR00406       210 RLQVKLIYLEQ-------------------------------------------------------P---IEGKADVIVA  231 (288)
T ss_pred             ceEEEeccccc-------------------------------------------------------c---cCCCceEEEE
Confidence            77766543110                                                       0   1357999999


Q ss_pred             CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEE-EEecCCCCHHHHHHHHHHcCCeEEE
Q 016734          248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVK  326 (384)
Q Consensus       248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t-~~vgk~~~l~~l~~~L~~~g~~~v~  326 (384)
                      |...                             ..+..++.+..++++++|++. +.+. .++..++.+.+++. +..+.
T Consensus       232 n~~~-----------------------------~~l~~ll~~~~~~LkpgG~li~sgi~-~~~~~~v~~~~~~~-f~~~~  280 (288)
T TIGR00406       232 NILA-----------------------------EVIKELYPQFSRLVKPGGWLILSGIL-ETQAQSVCDAYEQG-FTVVE  280 (288)
T ss_pred             ecCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEeCc-HhHHHHHHHHHHcc-Cceee
Confidence            9620                             123456667777778888764 3454 56788999999876 76555


Q ss_pred             EE
Q 016734          327 TT  328 (384)
Q Consensus       327 ~~  328 (384)
                      +.
T Consensus       281 ~~  282 (288)
T TIGR00406       281 IR  282 (288)
T ss_pred             Ee
Confidence            44

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.26  E-value=9.5e-11  Score=108.04  Aligned_cols=138  Identities=16%  Similarity=0.108  Sum_probs=101.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|.+++.++... +..+|+|+|+++.+++.|++|++.++ +.+++.++.+|..+               
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d~~~---------------  103 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGEAPE---------------  103 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEechhh---------------
Confidence            34689999999999998887654 45799999999999999999999997 66778888776321               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                           .+..   ..+.||.|+++...                      
T Consensus       104 -------------------------------------~l~~---~~~~~D~V~~~~~~----------------------  121 (198)
T PRK00377        104 -------------------------------------ILFT---INEKFDRIFIGGGS----------------------  121 (198)
T ss_pred             -------------------------------------hHhh---cCCCCCEEEECCCc----------------------
Confidence                                                 0101   13578999886310                      


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEE
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRW  338 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw  338 (384)
                             .-+..+++++...++++|.+....-...++..+.+.|++.|+ .++++++...+..++
T Consensus       122 -------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~  178 (198)
T PRK00377        122 -------EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITEVIIAKGMKT  178 (198)
T ss_pred             -------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEEEehhhcccc
Confidence                   013456677777778888876655557788999999999999 678777765544333

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.26  E-value=1.1e-10  Score=106.69  Aligned_cols=146  Identities=16%  Similarity=0.168  Sum_probs=93.2

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCE---------EEEEeCcHHHHHHHHHHH
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWS---------FVGSDMTDVALEWAEKNV  159 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~---------v~gvDid~~al~~A~~Ni  159 (384)
                      |-++.+-..+..+..-         .....+||..||||.|.+..+....+..         ++|+|+|+++++.|++|+
T Consensus        11 ~L~~~lA~~ll~la~~---------~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~   81 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGW---------RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL   81 (179)
T ss_dssp             SS-HHHHHHHHHHTT-----------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCC---------CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH
Confidence            5555555445444322         2345899999999999877766555555         999999999999999999


Q ss_pred             HHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCC
Q 016734          160 KSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDG  239 (384)
Q Consensus       160 ~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~  239 (384)
                      +..+ +.+.|.+.+.|..+                                                     +.   ...
T Consensus        82 ~~ag-~~~~i~~~~~D~~~-----------------------------------------------------l~---~~~  104 (179)
T PF01170_consen   82 KAAG-VEDYIDFIQWDARE-----------------------------------------------------LP---LPD  104 (179)
T ss_dssp             HHTT--CGGEEEEE--GGG-----------------------------------------------------GG---GTT
T ss_pred             Hhcc-cCCceEEEecchhh-----------------------------------------------------cc---ccc
Confidence            9998 88889998877431                                                     11   124


Q ss_pred             CcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHH
Q 016734          240 EQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK  319 (384)
Q Consensus       240 ~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~  319 (384)
                      +.+|+|||||||-.......            +      ...|+.+++++..+....  |...++.....+.   +.+..
T Consensus       105 ~~~d~IvtnPPyG~r~~~~~------------~------~~~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~---~~~~~  161 (179)
T PF01170_consen  105 GSVDAIVTNPPYGRRLGSKK------------D------LEKLYRQFLRELKRVLKP--RAVFLTTSNRELE---KALGL  161 (179)
T ss_dssp             SBSCEEEEE--STTSHCHHH------------H------HHHHHHHHHHHHHCHSTT--CEEEEEESCCCHH---HHHTS
T ss_pred             CCCCEEEECcchhhhccCHH------------H------HHHHHHHHHHHHHHHCCC--CEEEEEECCHHHH---HHhcc
Confidence            68999999999976432110            0      256889999998886655  5555555455554   44444


Q ss_pred             cCCe
Q 016734          320 VGVT  323 (384)
Q Consensus       320 ~g~~  323 (384)
                      .++.
T Consensus       162 ~~~~  165 (179)
T PF01170_consen  162 KGWR  165 (179)
T ss_dssp             TTSE
T ss_pred             hhhc
Confidence            4544

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.23  E-value=2.3e-10  Score=118.66  Aligned_cols=86  Identities=14%  Similarity=0.149  Sum_probs=67.4

Q ss_pred             hhccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734           69 LLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (384)
Q Consensus        69 L~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid  148 (384)
                      .+.|||.+|.++++++     +|+.++.++.    .         ....+|||||||+|+++..|+... +++++|+|+|
T Consensus       238 ~~~f~g~~~~v~~~v~-----~te~l~~~~~----~---------~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS  298 (475)
T PLN02336        238 YERVFGEGFVSTGGLE-----TTKEFVDKLD----L---------KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLS  298 (475)
T ss_pred             HHHHhCCCCCCCchHH-----HHHHHHHhcC----C---------CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECC
Confidence            3668999999999988     4555554432    1         134589999999999998888755 7899999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          149 DVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.+++.|++|+..   +..++.+..+|.
T Consensus       299 ~~~l~~A~~~~~~---~~~~v~~~~~d~  323 (475)
T PLN02336        299 VNMISFALERAIG---RKCSVEFEVADC  323 (475)
T ss_pred             HHHHHHHHHHhhc---CCCceEEEEcCc
Confidence            9999999998763   345789888874

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.23  E-value=8.2e-11  Score=109.14  Aligned_cols=133  Identities=13%  Similarity=0.085  Sum_probs=95.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|.+...++...++.+|+|+|+++.+++.|+++++.++ + .++.++.+|..+                 
T Consensus        41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~-----------------  101 (202)
T PRK00121         41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVE-----------------  101 (202)
T ss_pred             CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHH-----------------
Confidence            468999999999999999888888899999999999999999999887 6 468998887411                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCc--ccchhhhccCCccccCCCcccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF--FESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy--~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                         .+... -.++.||+|++|.|.  .....            ...  
T Consensus       102 -----------------------------------~l~~~-~~~~~~D~V~~~~~~p~~~~~~------------~~~--  131 (202)
T PRK00121        102 -----------------------------------VLLDM-FPDGSLDRIYLNFPDPWPKKRH------------HKR--  131 (202)
T ss_pred             -----------------------------------HHHHH-cCccccceEEEECCCCCCCccc------------ccc--
Confidence                                               00000 024679999998643  22100            000  


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCe
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT  323 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~  323 (384)
                            ......++++..++++++|.+....-....+..+.+.+++.|+.
T Consensus       132 ------~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~  175 (202)
T PRK00121        132 ------RLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF  175 (202)
T ss_pred             ------ccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc
Confidence                  00134556667777888888866655566788899999999863

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.22  E-value=8.9e-11  Score=116.03  Aligned_cols=90  Identities=13%  Similarity=0.186  Sum_probs=70.5

Q ss_pred             CcEEEecCCCccCCCcC-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        74 gl~~~vp~~~LiPrvP~-r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      |++|.+.++.+...-+. .+.++..+.+++...         .+.+|||+|||+|.+++.++.  .+.+|+|+|+++.|+
T Consensus       140 ~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~---------~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av  208 (315)
T PRK03522        140 GVPLFIRPQSFFQTNPAVAAQLYATARDWVREL---------PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAI  208 (315)
T ss_pred             CEEEEECCCeeeecCHHHHHHHHHHHHHHHHhc---------CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHH
Confidence            56788888888776332 355566666665421         236899999999999988886  457999999999999


Q ss_pred             HHHHHHHHHCCCCCCceEEEEcCC
Q 016734          153 EWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.|++|++.|+ + ++++++.+|.
T Consensus       209 ~~A~~n~~~~~-l-~~v~~~~~D~  230 (315)
T PRK03522        209 ACAKQSAAELG-L-TNVQFQALDS  230 (315)
T ss_pred             HHHHHHHHHcC-C-CceEEEEcCH
Confidence            99999999998 6 4699998874

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.21  E-value=2.8e-10  Score=100.11  Aligned_cols=61  Identities=25%  Similarity=0.327  Sum_probs=53.1

Q ss_pred             CCCeEEEECCcccHHHHHHHh-hccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGA-SLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~-~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      +..+|||+|||+|.+...|+. ..++.+++|+|+|+++++.|+++++.++ +. +++++++|..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~   64 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIE   64 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTT
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehh
Confidence            457999999999999999984 4678999999999999999999999997 66 7999998854

...

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.21  E-value=1.1e-10  Score=107.59  Aligned_cols=134  Identities=10%  Similarity=0.065  Sum_probs=95.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..++||||||+|.+...++.+.|+..|+|+|+++.+++.|++++..++ +. +|.++.+|..+                 
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l~-ni~~i~~d~~~-----------------   77 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-LK-NLHVLCGDANE-----------------   77 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-CC-CEEEEccCHHH-----------------
Confidence            458999999999999999999999999999999999999999999887 65 79999887431                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCC--cccchhhhccCCccccCCCcccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP--FFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPP--y~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                         +..... .++.||.+++|+|  +.+..    ...        .++
T Consensus        78 -----------------------------------~~~~~~-~~~~~d~v~~~~pdpw~k~~----h~~--------~r~  109 (194)
T TIGR00091        78 -----------------------------------LLDKFF-PDGSLSKVFLNFPDPWPKKR----HNK--------RRI  109 (194)
T ss_pred             -----------------------------------HHHhhC-CCCceeEEEEECCCcCCCCC----ccc--------ccc
Confidence                                               000011 2357999999975  33210    000        011


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcC-CeE
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG-VTI  324 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g-~~~  324 (384)
                              ....++++..++++.+|++.+..........+.+.+.+.+ +..
T Consensus       110 --------~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~  153 (194)
T TIGR00091       110 --------TQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN  153 (194)
T ss_pred             --------CCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence                    1345666777788889988666654445777788888776 443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.20  E-value=1.3e-09  Score=102.04  Aligned_cols=59  Identities=15%  Similarity=0.201  Sum_probs=51.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.++..++... ++.+++|+|+++.+++.|+++++.++ + ++++++.+|.
T Consensus        46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~  105 (231)
T TIGR02752        46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNA  105 (231)
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEech
Confidence            4689999999999998888775 56799999999999999999998876 5 4688888874

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.14  E-value=3.1e-10  Score=114.89  Aligned_cols=90  Identities=10%  Similarity=0.093  Sum_probs=69.0

Q ss_pred             CcEEEecCCCccCCCcC-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        74 gl~~~vp~~~LiPrvP~-r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      |++|.++++.+.-.-+. .+.++.++.+++...         ...+|||+|||+|.+++.++.  .+.+|+|+|+|+.|+
T Consensus       200 g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~---------~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av  268 (374)
T TIGR02085       200 DVPLVIRPQSFFQTNPKVAAQLYATARQWVREI---------PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAI  268 (374)
T ss_pred             CEEEEECCCccccCCHHHHHHHHHHHHHHHHhc---------CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHH
Confidence            55788888877766333 345555666665321         234899999999999988884  457999999999999


Q ss_pred             HHHHHHHHHCCCCCCceEEEEcCC
Q 016734          153 EWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.|++|++.|+ +. +++++.+|.
T Consensus       269 ~~a~~N~~~~~-~~-~~~~~~~d~  290 (374)
T TIGR02085       269 ACAQQSAQMLG-LD-NLSFAALDS  290 (374)
T ss_pred             HHHHHHHHHcC-CC-cEEEEECCH
Confidence            99999999997 64 699988874

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.14  E-value=3.5e-09  Score=105.95  Aligned_cols=80  Identities=13%  Similarity=-0.005  Sum_probs=58.1

Q ss_pred             CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734           83 QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus        83 ~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      .+.|+ +.++....++.+.+..        .....+|||||||+|.+...++...++.+++|+|+++.+++.|+++...+
T Consensus        90 ~~~~~-~~~e~~r~~~l~~~~l--------~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~  160 (340)
T PLN02490         90 IINPG-HWTEDMRDDALEPADL--------SDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK  160 (340)
T ss_pred             CeecC-cchHHHHHHHHhhccc--------CCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc
Confidence            34466 5566665555543321        12346899999999999888887777789999999999999999986532


Q ss_pred             CCCCCceEEEEcCC
Q 016734          163 PHISELIEIRKVDN  176 (384)
Q Consensus       163 ~~l~~~I~~~~~d~  176 (384)
                           ++.++.+|.
T Consensus       161 -----~i~~i~gD~  169 (340)
T PLN02490        161 -----ECKIIEGDA  169 (340)
T ss_pred             -----CCeEEeccH
Confidence                 367777663

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.11  E-value=3.4e-10  Score=104.31  Aligned_cols=93  Identities=11%  Similarity=-0.041  Sum_probs=67.1

Q ss_pred             cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      +-|..+..|++.-..+...  -..+.+...+...        -...++||++||||.+++.++.+.. ..|+++|+|+.+
T Consensus        16 ~kg~~l~~p~~~~~rpt~~--~vrea~f~~l~~~--------~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a   84 (189)
T TIGR00095        16 RGGRLLKLPPGGSTRPTTR--VVRELFFNILRPE--------IQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKA   84 (189)
T ss_pred             hCCcccCCCCCCCCCCchH--HHHHHHHHHHHHh--------cCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHH
Confidence            3456667777655433233  2333444444321        1245899999999999988887643 389999999999


Q ss_pred             HHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          152 LEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       152 l~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ++.+++|++.++ ++++++++.+|.
T Consensus        85 ~~~~~~N~~~~~-~~~~~~~~~~D~  108 (189)
T TIGR00095        85 NQTLKENLALLK-SGEQAEVVRNSA  108 (189)
T ss_pred             HHHHHHHHHHhC-CcccEEEEehhH
Confidence            999999999997 777899998874

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.11  E-value=7.8e-10  Score=114.20  Aligned_cols=145  Identities=16%  Similarity=0.137  Sum_probs=99.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|..+..++... ++.+++|+|+++.+++.+++|+++++ +.+ |.++.+|..+                
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~~-v~~~~~D~~~----------------  312 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LTN-IETKALDARK----------------  312 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCe-EEEEeCCccc----------------
Confidence            4589999999999999988876 56799999999999999999999998 654 8998887432                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          +...+   .+.||+|+||||+...... ..+|...+..+...+.
T Consensus       313 ------------------------------------~~~~~---~~~fD~Vl~D~Pcsg~G~~-~~~p~~~~~~~~~~~~  352 (444)
T PRK14902        313 ------------------------------------VHEKF---AEKFDKILVDAPCSGLGVI-RRKPDIKYNKTKEDIE  352 (444)
T ss_pred             ------------------------------------ccchh---cccCCEEEEcCCCCCCeee-ccCcchhhcCCHHHHH
Confidence                                                00001   2579999999998754321 2234333222211100


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEE---EEecCCCCHHHHHHHHHHcC
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t---~~vgk~~~l~~l~~~L~~~g  321 (384)
                         .-......+++.+..+++++|.+.   +.+...++...+...|++++
T Consensus       353 ---~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~  399 (444)
T PRK14902        353 ---SLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP  399 (444)
T ss_pred             ---HHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence               002344568888988888888654   45555556666666777764

>PLN02244 tocopherol O-methyltransferase

Probab=99.10  E-value=7.7e-09  Score=103.39  Aligned_cols=85  Identities=19%  Similarity=0.234  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCce
Q 016734           90 NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELI  169 (384)
Q Consensus        90 ~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I  169 (384)
                      .++..+..+..++....++.. ......+|||||||+|.++..|+.++ +.+|+|+|+++.+++.|+++++.++ +.++|
T Consensus        94 ~~~aq~~~~~~~l~~~~~~~~-~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v  170 (340)
T PLN02244         94 HRQAQIRMIEESLAWAGVPDD-DEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG-LSDKV  170 (340)
T ss_pred             HHHHHHHHHHHHHHhcCCCcc-cCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC-CCCce
Confidence            344445555555543221100 01245689999999999988888765 7899999999999999999999887 77789


Q ss_pred             EEEEcCCC
Q 016734          170 EIRKVDNS  177 (384)
Q Consensus       170 ~~~~~d~~  177 (384)
                      +++.+|..
T Consensus       171 ~~~~~D~~  178 (340)
T PLN02244        171 SFQVADAL  178 (340)
T ss_pred             EEEEcCcc
Confidence            99988743

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.09  E-value=1.7e-09  Score=111.30  Aligned_cols=145  Identities=14%  Similarity=0.113  Sum_probs=101.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||+|||+|..+..++...++.+|+|+|+++.+++.+++|+++++ +.  +.++.+|..+  +             
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~~--~~~~~~D~~~--~-------------  305 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-LK--ATVIVGDARD--P-------------  305 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-CC--eEEEEcCccc--c-------------
Confidence            3468999999999999999887776899999999999999999999987 54  6777777431  0             


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                        +.++     ..++||.|+||||+..+.... ..|..........+.
T Consensus       306 ----------------------------------~~~~-----~~~~fD~Vl~D~Pcs~~G~~~-~~p~~~~~~~~~~l~  345 (427)
T PRK10901        306 ----------------------------------AQWW-----DGQPFDRILLDAPCSATGVIR-RHPDIKWLRRPEDIA  345 (427)
T ss_pred             ----------------------------------hhhc-----ccCCCCEEEECCCCCcccccc-cCccccccCCHHHHH
Confidence                                              0000     245799999999998643221 233322211111000


Q ss_pred             ccCch-HHHHHHHHHHHHHhhccCeEEE---EEecCCCCHHHHHHHHHHcC
Q 016734          275 CSGGE-RAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       275 ~~GGe-l~Fv~~ii~eS~~l~~~~~w~t---~~vgk~~~l~~l~~~L~~~g  321 (384)
                          + .....++++.+..+++.+|.+.   |.+....+...+...|++++
T Consensus       346 ----~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~  392 (427)
T PRK10901        346 ----ALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP  392 (427)
T ss_pred             ----HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence                1 2445678899988888888753   45556778888888888764

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.09  E-value=5.6e-10  Score=100.34  Aligned_cols=56  Identities=9%  Similarity=0.063  Sum_probs=47.6

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..++||||||+|.+...++.+  +.+++|+|+|+.+++.+++|+...    ++++++++|..
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~   69 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDAL   69 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchh
Confidence            458999999999999988876  579999999999999999998542    36899988754

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.08  E-value=1.6e-09  Score=103.56  Aligned_cols=59  Identities=14%  Similarity=0.224  Sum_probs=51.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+.+|||+|||+|.++..|+..  +.+|+|+|+++++++.|++++...+ +.+++++++++.
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~  102 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAA  102 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCH
Confidence            3468999999999998888764  6799999999999999999999887 777899988874

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.05  E-value=4.2e-09  Score=108.26  Aligned_cols=90  Identities=16%  Similarity=0.123  Sum_probs=69.3

Q ss_pred             CcEEEecCCCccCCCcC-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        74 gl~~~vp~~~LiPrvP~-r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      |+.|.++++.+...-|. .+.++.++.+.+..         ....+|||+|||+|.+++.++..  ..+|+|+|+++.|+
T Consensus       259 ~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~---------~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av  327 (431)
T TIGR00479       259 DLSFSLSARDFFQVNSGQNEKLVDRALEALEL---------QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESV  327 (431)
T ss_pred             CEEEEECCCceeecCHHHHHHHHHHHHHHhcc---------CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHH
Confidence            56778888877765333 44556666665532         12358999999999999998865  34899999999999


Q ss_pred             HHHHHHHHHCCCCCCceEEEEcCC
Q 016734          153 EWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.|++|++.|+ +. +++++.+|.
T Consensus       328 ~~a~~n~~~~~-~~-nv~~~~~d~  349 (431)
T TIGR00479       328 EKAQQNAELNG-IA-NVEFLAGTL  349 (431)
T ss_pred             HHHHHHHHHhC-CC-ceEEEeCCH
Confidence            99999999997 64 699998874

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.04  E-value=2.2e-08  Score=96.61  Aligned_cols=60  Identities=18%  Similarity=0.158  Sum_probs=47.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHH--HCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVK--SNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~--~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.+...++... +.++|+|+|+|++|++.|+++..  ... ..++|+++.+|.
T Consensus        74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~  136 (261)
T PLN02233         74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDA  136 (261)
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEccc
Confidence            4689999999999988888764 46799999999999999987754  222 234688888874

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.02  E-value=1.2e-08  Score=85.23  Aligned_cols=58  Identities=22%  Similarity=0.149  Sum_probs=51.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ..++||+|||+|..+..++.+.++.+|+|+|+++.+++.|++|++.++ +. +++++.+|
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~~   77 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-VS-NIVIVEGD   77 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-CC-ceEEEecc
Confidence            358999999999999999988888899999999999999999999886 54 57877765

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.02  E-value=4.1e-09  Score=100.54  Aligned_cols=60  Identities=8%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             CCeEEEECCcccHHHHHHHhh--ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.....++..  .++++++|+|+|+.|++.|++++..++ +..+++++.+|.
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~~v~~~~~d~  118 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDI  118 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEeCCh
Confidence            458999999999988777763  578999999999999999999999887 667899988874

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.00  E-value=2.4e-09  Score=103.05  Aligned_cols=56  Identities=14%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.+...++.+  +.+++|+|+|+.+++.+++++...    ++++++.+|..
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~----~~v~ii~~D~~   85 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAA----GNVEIIEGDAL   85 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccC----CCEEEEEeccc
Confidence            468999999999999998876  458999999999999999988542    36999988853

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.00  E-value=1.9e-08  Score=96.80  Aligned_cols=60  Identities=22%  Similarity=0.200  Sum_probs=49.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.....++... +..+|+|+|+++.+++.|++|++.++ +. +++++.+|.
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~~-~v~~~~~d~  137 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-YT-NVEFRLGEI  137 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-CC-CEEEEEcch
Confidence            34699999999998776666553 45689999999999999999998886 53 688887764

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.00  E-value=1.9e-08  Score=100.09  Aligned_cols=108  Identities=20%  Similarity=0.372  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHhhccCCcEEEecCCCccC---CCcCHHHHHHHHH-HHhccCCCCCCCCCCCCCeEEEECCcccHHHHH
Q 016734           57 DFNATRELTRVLLLHDHGLNWWIPDGQLCP---TVPNRSNYIHWIE-DLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPL  132 (384)
Q Consensus        57 ~~~av~~Lt~alL~~~fgl~~~vp~~~LiP---rvP~r~~yi~~i~-dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~  132 (384)
                      |++.+..+.+.  .+    .|+-+.|-+-|   --|.|..|+..+. ..+..+..  ........+|||||||+|.++..
T Consensus        77 ~~~e~~~f~~~--a~----~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~--~~~~~~g~~ILDIGCG~G~~s~~  148 (322)
T PLN02396         77 NEDELAKFSAI--AD----TWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPS--SAKPFEGLKFIDIGCGGGLLSEP  148 (322)
T ss_pred             CHHHHHHHHHH--HH----HhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchh--hccCCCCCEEEEeeCCCCHHHHH
Confidence            56666665551  11    46666665544   2356777775443 23322110  00012345899999999999887


Q ss_pred             HHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          133 LGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       133 La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      |+.  .+.+|+|+|+++++++.|+.++..++ +..+|.++.++
T Consensus       149 La~--~g~~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~d  188 (322)
T PLN02396        149 LAR--MGATVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTT  188 (322)
T ss_pred             HHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecC
Confidence            764  57899999999999999999987765 55578888876

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.99  E-value=7.5e-09  Score=95.43  Aligned_cols=55  Identities=15%  Similarity=0.192  Sum_probs=46.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      +.+|||+|||+|.++..|+.+  +++|+|+|+|+.+++.|+++++.++ +.  +.+...|
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~-~~--v~~~~~d   85 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAREN-LP--LRTDAYD   85 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhC-CC--ceeEecc
Confidence            468999999999999888864  6899999999999999999998876 53  5555554

Part of a tellurite-reducing operon tehA and tehB

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.99  E-value=2.5e-09  Score=105.05  Aligned_cols=59  Identities=14%  Similarity=0.188  Sum_probs=50.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.+...|+..  ..+++|+|+|+.+++.+++++..++ +.++++++++|..
T Consensus        37 ~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal   95 (294)
T PTZ00338         37 TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDAL   95 (294)
T ss_pred             cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHh
Confidence            458999999999999888765  4589999999999999999998876 5678999998853

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.98  E-value=1.1e-08  Score=94.04  Aligned_cols=59  Identities=14%  Similarity=0.129  Sum_probs=51.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.++..++...++.+|+|+|+|+++++.|++|++.++ +. +++++.+|.
T Consensus        41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~~-~v~~~~~d~   99 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-VK-NVEVIEGSA   99 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-CeEEEECch
Confidence            458999999999999888877778899999999999999999999987 54 588888763

>TIGR00740 methyltransferase, putative

Probab=98.98  E-value=2.3e-08  Score=94.59  Aligned_cols=61  Identities=13%  Similarity=0.136  Sum_probs=52.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.....++...  ++++++|+|+++.+++.|++++...+ ...++.++.+|..
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~~  116 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDIR  116 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECChh
Confidence            4589999999999988888764  68999999999999999999998765 5567899888753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.97  E-value=1.8e-09  Score=104.74  Aligned_cols=55  Identities=11%  Similarity=0.074  Sum_probs=46.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.++..|+.+.+  +++|+|+|+.+++.+++++..     +++.++++|..
T Consensus        43 ~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~   97 (272)
T PRK00274         43 GDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE-----DNLTIIEGDAL   97 (272)
T ss_pred             cCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc-----CceEEEEChhh
Confidence            45899999999999999987743  899999999999999987642     36899998854

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.97  E-value=1.8e-08  Score=96.30  Aligned_cols=53  Identities=17%  Similarity=0.157  Sum_probs=44.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..|+.+.++.+|+|+|+++.+++.|+++         .+.++.+|.
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~   81 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDV   81 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcCh
Confidence            45689999999999999999888889999999999999999652         256666663

>PRK04457 spermidine synthase; Provisional

Probab=98.95  E-value=1.2e-08  Score=98.57  Aligned_cols=75  Identities=15%  Similarity=0.148  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      .|..++...+...        ..+.+|||||||+|.++..++...|+.+++++|+|+++++.|+++...++ ..++++++
T Consensus        52 ~y~~~m~~~l~~~--------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~  122 (262)
T PRK04457         52 AYTRAMMGFLLFN--------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVI  122 (262)
T ss_pred             HHHHHHHHHHhcC--------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEE
Confidence            4777775544321        23568999999999999989888899999999999999999999987654 45689999


Q ss_pred             EcCC
Q 016734          173 KVDN  176 (384)
Q Consensus       173 ~~d~  176 (384)
                      .+|.
T Consensus       123 ~~Da  126 (262)
T PRK04457        123 EADG  126 (262)
T ss_pred             ECCH
Confidence            8874

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.95  E-value=2e-08  Score=93.56  Aligned_cols=58  Identities=16%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +|||||||+|..+..++..+++.+++|+|+|+.+++.|++++...+ +.+++.++..|.
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~   59 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDS   59 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEeccc
Confidence            6999999999998888888888899999999999999999999887 888899988774

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.95  E-value=1.3e-08  Score=104.67  Aligned_cols=147  Identities=16%  Similarity=0.093  Sum_probs=99.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|..+..++...++.+++|+|+++.+++.+++|+++++ +...+.+..+|...                 
T Consensus       239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~-----------------  300 (426)
T TIGR00563       239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRG-----------------  300 (426)
T ss_pred             CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecccccc-----------------
Confidence            468999999999999999887777799999999999999999999998 65333334443211                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                       +..+    ...++||.|+++||+..+.--. ..|...+..+..++. 
T Consensus       301 ---------------------------------~~~~----~~~~~fD~VllDaPcSg~G~~~-~~p~~~~~~~~~~~~-  341 (426)
T TIGR00563       301 ---------------------------------PSQW----AENEQFDRILLDAPCSATGVIR-RHPDIKWLRKPRDIA-  341 (426)
T ss_pred             ---------------------------------cccc----ccccccCEEEEcCCCCCCcccc-cCcchhhcCCHHHHH-
Confidence                                             0000    0246799999999987654322 234332222221110 


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g  321 (384)
                        .-...-.+|++++..+++++|.+   ||-+...++-..+...|++++
T Consensus       342 --~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~  388 (426)
T TIGR00563       342 --ELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP  388 (426)
T ss_pred             --HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence              00234567889998888888876   355666678888888888764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.94  E-value=9.6e-09  Score=97.74  Aligned_cols=60  Identities=23%  Similarity=0.248  Sum_probs=45.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+.+|||+|||+|.++..++... ++.+|+|+|+++.+++.|++.++..+ .. +|+++++|.
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~~-~i~~v~~da  107 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-LQ-NIEFVQGDA  107 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BT
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-CC-CeeEEEcCH
Confidence            35699999999999998888764 56799999999999999999999886 44 799999884

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.94  E-value=2.3e-08  Score=93.48  Aligned_cols=151  Identities=11%  Similarity=0.093  Sum_probs=98.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||||||+|.+...+++.. +..+|+|+|+++.           ++ +. .+.++++|..+.  .         .  
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~-~~-~v~~i~~D~~~~--~---------~--  105 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP-IV-GVDFLQGDFRDE--L---------V--  105 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC-CC-CcEEEecCCCCh--H---------H--
Confidence            4589999999999988888775 3469999999981           22 32 388888885420  0         0  


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECC-CcccchhhhccCCccccCCCcccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP-PFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNP-Py~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                +                       ..+...+  ..+.||+|+||+ |++........         ..  
T Consensus       106 ----------~-----------------------~~i~~~~--~~~~~D~V~S~~~~~~~g~~~~d~---------~~--  139 (209)
T PRK11188        106 ----------L-----------------------KALLERV--GDSKVQVVMSDMAPNMSGTPAVDI---------PR--  139 (209)
T ss_pred             ----------H-----------------------HHHHHHh--CCCCCCEEecCCCCccCCChHHHH---------HH--
Confidence                      0                       0001111  246899999998 66532110000         00  


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCe---eEEEEEEec
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF  344 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t---~Rw~~AWsf  344 (384)
                           ...+...+++++.++++.+|+|.+-+-..+.+.++...|++ .|..+++++..+++.   ..++|+-.|
T Consensus       140 -----~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~s~e~~~~~~~~  207 (209)
T PRK11188        140 -----AMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVATGR  207 (209)
T ss_pred             -----HHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-CceEEEEECCccccccCceeEEEeecc
Confidence                 12235678889999999999998755557778888766653 578899999999874   455555444

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.94  E-value=8.5e-09  Score=99.58  Aligned_cols=142  Identities=12%  Similarity=0.094  Sum_probs=92.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|..+..++.... ...|+|+|+++.+++.+++|+++++ +. .|.++..|...                
T Consensus        72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~----------------  133 (264)
T TIGR00446        72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-VL-NVAVTNFDGRV----------------  133 (264)
T ss_pred             cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-CC-cEEEecCCHHH----------------
Confidence            45899999999999998887764 3589999999999999999999998 54 48888776321                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                           +..   ..+.||.|++|||+....-. ..+|.....-+...+.
T Consensus       134 -------------------------------------~~~---~~~~fD~Vl~D~Pcsg~G~~-~~~p~~~~~~~~~~~~  172 (264)
T TIGR00446       134 -------------------------------------FGA---AVPKFDAILLDAPCSGEGVI-RKDPSRKKNWSEEDIQ  172 (264)
T ss_pred             -------------------------------------hhh---hccCCCEEEEcCCCCCCccc-ccChhhhhcCCHHHHH
Confidence                                                 000   12459999999998754322 1233221111111000


Q ss_pred             ccCch-HHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHc
Q 016734          275 CSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKV  320 (384)
Q Consensus       275 ~~GGe-l~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~  320 (384)
                          . ...-..+++.+..+++++|++   |+-+...++-.-+...|+++
T Consensus       173 ----~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~  218 (264)
T TIGR00446       173 ----EISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR  218 (264)
T ss_pred             ----HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence                1 123456888998888888865   34444444444555556655

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.94  E-value=2.5e-08  Score=108.74  Aligned_cols=80  Identities=21%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc----c--------------------------
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL----L--------------------------  138 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~----~--------------------------  138 (384)
                      |-++.+...+..+..-   +     .....++|.+||||.|.+..|...    |                          
T Consensus       172 pl~etlAaa~l~~a~w---~-----~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~  243 (702)
T PRK11783        172 PLKENLAAAILLRSGW---P-----QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE  243 (702)
T ss_pred             CCcHHHHHHHHHHcCC---C-----CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence            6677766655543221   0     124689999999999987655420    1                          


Q ss_pred             ------------CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          139 ------------GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       139 ------------~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                                  ..+++|+|+|+.|++.|++|++.++ +.+.|.++++|..
T Consensus       244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g-~~~~i~~~~~D~~  293 (702)
T PRK11783        244 AQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAG-VAELITFEVKDVA  293 (702)
T ss_pred             HHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeCChh
Confidence                        1369999999999999999999998 8888999998854

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.92  E-value=4e-08  Score=95.88  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.+|||+|||+|..+..|+..  +++|+|+|+|+.|++.|+++++.++ +  .+.+...|.
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~  176 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDI  176 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEech
Confidence            358999999999998888763  6899999999999999999999887 5  477776653

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.92  E-value=1.5e-08  Score=94.08  Aligned_cols=60  Identities=13%  Similarity=0.175  Sum_probs=52.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.++..++.... +.+|+|+|+++++++.|++|++.++ +.++++++.+|.
T Consensus        73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~  133 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDG  133 (205)
T ss_pred             CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCc
Confidence            45899999999999988887654 5699999999999999999999987 777799998874

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=1.8e-09  Score=95.21  Aligned_cols=58  Identities=24%  Similarity=0.275  Sum_probs=47.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ++.+++|+|||+|.+.  .+..+++ -.|+|+||||+||+.+.+|++... +  .+.++++++.
T Consensus        48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE-v--qidlLqcdil  106 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFE-V--QIDLLQCDIL  106 (185)
T ss_pred             cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhh-h--hhheeeeecc
Confidence            5678999999999986  4445554 479999999999999999999875 4  3688888754

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.89  E-value=6.3e-08  Score=88.85  Aligned_cols=133  Identities=18%  Similarity=0.170  Sum_probs=97.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+++|||||||.|++-++...|..+++|+|-++++++..++|+++.+ + +++.++.++..+                
T Consensus        34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~-~n~~vv~g~Ap~----------------   95 (187)
T COG2242          34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-V-DNLEVVEGDAPE----------------   95 (187)
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-C-CcEEEEeccchH----------------
Confidence            3458999999999999999977899999999999999999999999998 4 479999887321                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          .+.+.    .+||.+                             
T Consensus        96 ------------------------------------~L~~~----~~~dai-----------------------------  106 (187)
T COG2242          96 ------------------------------------ALPDL----PSPDAI-----------------------------  106 (187)
T ss_pred             ------------------------------------hhcCC----CCCCEE-----------------------------
Confidence                                                11111    133433                             


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCe
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT  335 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t  335 (384)
                      +.||+ .=+..+++.+...++.+|-...-.-..+++..+.+.|++.|+.++..+....|+.
T Consensus       107 FIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~  166 (187)
T COG2242         107 FIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQISRGKP  166 (187)
T ss_pred             EECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEeeccee
Confidence            22333 3477778888887777776655555578888889999999985344444445543

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.88  E-value=8.9e-09  Score=84.40  Aligned_cols=56  Identities=20%  Similarity=0.291  Sum_probs=44.7

Q ss_pred             EEEECCcccHHHHHHHhhc---cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          119 GFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       119 vLDIGtGsG~I~~~La~~~---~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      |||+|||+|.....++..+   +..+++|+|+|+++++.|+++....+ .  .++++++|..
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~~   59 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADAR   59 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCTT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCHh
Confidence            7999999999998888765   45899999999999999999998765 4  6889988853

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.88  E-value=1e-07  Score=92.10  Aligned_cols=57  Identities=21%  Similarity=0.266  Sum_probs=46.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|..+..|+.. .+++|+|+|+++.+++.|+++....    ++|.++.+|.
T Consensus        52 ~~~~VLDiGcG~G~~a~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~----~~i~~~~~D~  108 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYINEK-YGAHVHGVDICEKMVNIAKLRNSDK----NKIEFEANDI  108 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHHhh-cCCEEEEEECCHHHHHHHHHHcCcC----CceEEEECCc
Confidence            3468999999999988777755 4789999999999999999886532    3688887764

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.88  E-value=7.1e-09  Score=98.58  Aligned_cols=75  Identities=12%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734           90 NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (384)
Q Consensus        90 ~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~  168 (384)
                      +...++.++....            ...+|||||||+|+.++.++...+ +.+++++|+|+++++.|++|++.++ +.++
T Consensus        55 ~~g~~L~~l~~~~------------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~  121 (234)
T PLN02781         55 DEGLFLSMLVKIM------------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHK  121 (234)
T ss_pred             HHHHHHHHHHHHh------------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCc
Confidence            5555666555443            345899999999998888877654 5699999999999999999999998 8889


Q ss_pred             eEEEEcCCC
Q 016734          169 IEIRKVDNS  177 (384)
Q Consensus       169 I~~~~~d~~  177 (384)
                      |+++.+|..
T Consensus       122 i~~~~gda~  130 (234)
T PLN02781        122 INFIQSDAL  130 (234)
T ss_pred             EEEEEccHH
Confidence            999999854

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.88  E-value=2.3e-08  Score=92.33  Aligned_cols=57  Identities=19%  Similarity=0.230  Sum_probs=48.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.+|||+|||+|..+..|+.+  +++|+|+|+|+.+++.|+++++.++ +. .++++..|.
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~-~~-~v~~~~~d~   87 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN-LD-NLHTAVVDL   87 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC-CC-cceEEecCh
Confidence            468999999999999888864  6899999999999999999999886 54 477766653

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.88  E-value=1.2e-08  Score=103.60  Aligned_cols=107  Identities=15%  Similarity=0.089  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHh--hccCCcEEE-----ecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHH
Q 016734           58 FNATRELTRVLL--LHDHGLNWW-----IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY  130 (384)
Q Consensus        58 ~~av~~Lt~alL--~~~fgl~~~-----vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~  130 (384)
                      |.-+-.|.+||-  .+.|.+++-     .-.+.+..+    ..|+.-..+++..-.      ......+||||||+|...
T Consensus        68 p~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~------~~~~p~vLEIGcGsG~~l  137 (390)
T PRK14121         68 PSKVGILKKALKIFSELFCADIISHNLAENSKKLSLK----KPYILDIDNFLDFIS------KNQEKILIEIGFGSGRHL  137 (390)
T ss_pred             ccchHHHHHHHHHHHHHhhcccccccccccccccccc----ccccCCHHHHHHHhc------CCCCCeEEEEcCcccHHH
Confidence            444667777763  445544322     222344433    334433334443211      123458999999999999


Q ss_pred             HHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          131 PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       131 ~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|.+.|++.++|+|+++.+++.|.+++..++ +. +|.++++|.
T Consensus       138 l~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L~-NV~~i~~DA  181 (390)
T PRK14121        138 LYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-LK-NLLIINYDA  181 (390)
T ss_pred             HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEECCH
Confidence            999999999999999999999999999999987 75 499998874

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.88  E-value=1.6e-08  Score=104.29  Aligned_cols=145  Identities=15%  Similarity=0.136  Sum_probs=99.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|..+..++... ++.+|+|+|+++.+++.+++|+++.+ +. .|.++.+|...                
T Consensus       238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~~-~v~~~~~Da~~----------------  299 (431)
T PRK14903        238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-LS-SIEIKIADAER----------------  299 (431)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-eEEEEECchhh----------------
Confidence            4589999999999998888765 45799999999999999999999997 65 48888877421                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                           +...  ..++||.|+|+||+...... ..+|..........+ 
T Consensus       300 -------------------------------------l~~~--~~~~fD~Vl~DaPCsg~G~~-~~~p~~~~~~~~~~~-  338 (431)
T PRK14903        300 -------------------------------------LTEY--VQDTFDRILVDAPCTSLGTA-RNHPEVLRRVNKEDF-  338 (431)
T ss_pred             -------------------------------------hhhh--hhccCCEEEECCCCCCCccc-cCChHHHHhCCHHHH-
Confidence                                                 0000  13579999999999765432 122322111111100 


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g  321 (384)
                        .+-..+-.+|+.++..+++.+|.+   ||-+...++-..|...|+++.
T Consensus       339 --~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~  386 (431)
T PRK14903        339 --KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK  386 (431)
T ss_pred             --HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC
Confidence              001235678899999988888765   455666667777777887653

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.88  E-value=1.7e-07  Score=87.12  Aligned_cols=60  Identities=18%  Similarity=0.185  Sum_probs=51.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.....++...+ ..+++++|+++.+++.|++++..++ +...+.++.+|.
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~  112 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDA  112 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEeccc
Confidence            46899999999999988887776 6899999999999999999998765 566788887764

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.86  E-value=1.7e-08  Score=100.20  Aligned_cols=81  Identities=19%  Similarity=0.092  Sum_probs=62.5

Q ss_pred             CCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        73 fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      ||....+....+.++ ++++..+..+.+++....      .....+|||||||+|.++..|+..  +.+|+|+|+++.|+
T Consensus       109 y~~~d~v~~~~l~~~-~~~~~~v~~~l~~l~~~~------~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml  179 (315)
T PLN02585        109 YGETDEVNKVQLDIR-LGHAQTVEKVLLWLAEDG------SLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMV  179 (315)
T ss_pred             cCCccccCceeeecc-cChHHHHHHHHHHHHhcC------CCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHH
Confidence            444455666678888 887777777777765310      013468999999999998888854  68999999999999


Q ss_pred             HHHHHHHHHC
Q 016734          153 EWAEKNVKSN  162 (384)
Q Consensus       153 ~~A~~Ni~~n  162 (384)
                      +.|++++...
T Consensus       180 ~~A~~~~~~~  189 (315)
T PLN02585        180 AEAERRAKEA  189 (315)
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.86  E-value=7e-09  Score=95.28  Aligned_cols=89  Identities=19%  Similarity=0.208  Sum_probs=62.2

Q ss_pred             CCcEEEecCC-CccCCCcC--HHHHHHHHHHH-hccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734           73 HGLNWWIPDG-QLCPTVPN--RSNYIHWIEDL-LSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (384)
Q Consensus        73 fgl~~~vp~~-~LiPrvP~--r~~yi~~i~dl-l~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid  148 (384)
                      -|..+..|++ .+=|+ ++  ||....|+... +            ...++||+.||||++++-.+++. ..+|+.||.|
T Consensus         9 kgr~l~~p~~~~~RPT-~drvrealFniL~~~~~------------~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~   74 (183)
T PF03602_consen    9 KGRKLKTPKGDNTRPT-TDRVREALFNILQPRNL------------EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKN   74 (183)
T ss_dssp             TT-EEE-TT--TS-SS-SHHHHHHHHHHHHCH-H------------TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-
T ss_pred             CCCEecCCCCCCcCCC-cHHHHHHHHHHhccccc------------CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECC
Confidence            4667888885 55566 66  35555555543 2            34689999999999998766553 2489999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          149 DVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.+++..++|++..+ +++++.++..|.
T Consensus        75 ~~a~~~i~~N~~~l~-~~~~~~v~~~d~  101 (183)
T PF03602_consen   75 RKAIKIIKKNLEKLG-LEDKIRVIKGDA  101 (183)
T ss_dssp             HHHHHHHHHHHHHHT--GGGEEEEESSH
T ss_pred             HHHHHHHHHHHHHhC-CCcceeeeccCH
Confidence            999999999999997 788899988873

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK00811 spermidine synthase; Provisional

Probab=98.86  E-value=1.8e-07  Score=91.33  Aligned_cols=97  Identities=9%  Similarity=0.001  Sum_probs=63.6

Q ss_pred             cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      +||.-+.+......-. .....|-+.+.......       ...+.+|||||||.|.++..+++.....+|+++|+|+.+
T Consensus        41 ~~g~~l~lDg~~q~~~-~de~~Y~e~l~h~~~~~-------~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~v  112 (283)
T PRK00811         41 EFGRLLALDGCVMTTE-RDEFIYHEMMTHVPLFA-------HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERV  112 (283)
T ss_pred             CccEEEEECCeeeecC-cchhhHHHHhhhHHHhh-------CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHH
Confidence            3555555554433332 33345555444332221       124568999999999998877754345699999999999


Q ss_pred             HHHHHHHHHHCC-CC--CCceEEEEcCC
Q 016734          152 LEWAEKNVKSNP-HI--SELIEIRKVDN  176 (384)
Q Consensus       152 l~~A~~Ni~~n~-~l--~~~I~~~~~d~  176 (384)
                      ++.|+++....+ .+  ..+++++.+|.
T Consensus       113 v~~a~~~~~~~~~~~~~d~rv~v~~~Da  140 (283)
T PRK00811        113 VEVCRKYLPEIAGGAYDDPRVELVIGDG  140 (283)
T ss_pred             HHHHHHHhHHhccccccCCceEEEECch
Confidence            999999886421 01  35788888874

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.85  E-value=1.4e-07  Score=87.87  Aligned_cols=59  Identities=15%  Similarity=0.212  Sum_probs=49.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++..  +.+++|+|+|+++++.|++++..++ ..+++.+..+|.
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~  113 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDL  113 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCh
Confidence            3568999999999998888754  5699999999999999999998776 556788887763

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.85  E-value=1.3e-08  Score=102.61  Aligned_cols=73  Identities=14%  Similarity=0.256  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (384)
Q Consensus        91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~  170 (384)
                      ++.++.++.+.+..          ...++||++||+|.+++.|+...  .+|+|+|+++.|++.|++|++.|+ +. +++
T Consensus       192 ~e~l~~~v~~~~~~----------~~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~-~~-~v~  257 (362)
T PRK05031        192 NEKMLEWALDATKG----------SKGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG-ID-NVQ  257 (362)
T ss_pred             HHHHHHHHHHHhhc----------CCCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC-CC-cEE
Confidence            67778888776642          12369999999999999888653  389999999999999999999998 65 699


Q ss_pred             EEEcCCC
Q 016734          171 IRKVDNS  177 (384)
Q Consensus       171 ~~~~d~~  177 (384)
                      ++.+|..
T Consensus       258 ~~~~d~~  264 (362)
T PRK05031        258 IIRMSAE  264 (362)
T ss_pred             EEECCHH
Confidence            9988853

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.83  E-value=3.5e-08  Score=92.13  Aligned_cols=60  Identities=18%  Similarity=0.155  Sum_probs=51.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..|+.... ..+|+|+|+++++++.|++|++.++ + ++++++.+|.
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~  137 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDG  137 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCc
Confidence            346899999999999988887653 4679999999999999999999997 6 4689988874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.82  E-value=5.2e-08  Score=100.50  Aligned_cols=147  Identities=14%  Similarity=0.044  Sum_probs=99.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|..+..++.... ..+|+|+|+++.+++.+++|+++++ +. .|.++.+|..+. +             
T Consensus       253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~~-~v~~~~~D~~~~-~-------------  316 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-LK-SIKILAADSRNL-L-------------  316 (434)
T ss_pred             cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-CC-eEEEEeCChhhc-c-------------
Confidence            46899999999999998887754 4699999999999999999999998 65 488888874320 0             


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                         ..+ .  ...++||.|+++||....... ...|...+.-+...+ 
T Consensus       317 -----------------------------------~~~-~--~~~~~fD~Vl~DaPCSg~G~~-~r~p~~~~~~~~~~~-  356 (434)
T PRK14901        317 -----------------------------------ELK-P--QWRGYFDRILLDAPCSGLGTL-HRHPDARWRQTPEKI-  356 (434)
T ss_pred             -----------------------------------ccc-c--cccccCCEEEEeCCCCccccc-ccCcchhhhCCHHHH-
Confidence                                               000 0  013579999999997543221 123322111111100 


Q ss_pred             ccCch-HHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734          275 CSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       275 ~~GGe-l~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g  321 (384)
                         -+ ...-.+|++++..+++.+|-+   ||.+...++...+...|++++
T Consensus       357 ---~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~  404 (434)
T PRK14901        357 ---QELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP  404 (434)
T ss_pred             ---HHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence               01 123467889988888887744   456777788888888898874

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.81  E-value=9.9e-08  Score=87.10  Aligned_cols=151  Identities=12%  Similarity=0.122  Sum_probs=97.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||||||+|.+...++.+. +..+++|+|+++.+           . . ..+.++.+|..+..+.           
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~-~-~~i~~~~~d~~~~~~~-----------   87 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------P-I-ENVDFIRGDFTDEEVL-----------   87 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------c-C-CCceEEEeeCCChhHH-----------
Confidence            34689999999999988888776 45689999999854           1 1 1367777764320000           


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECC--CcccchhhhccCCccccCCCcc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP--PFFESMEEAGLNPKTSCGGTPE  271 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNP--Py~~s~~~~~~~p~~~~~g~~~  271 (384)
                                                         ..+....  ..++||+|+||+  ||....   ..+       ...
T Consensus        88 -----------------------------------~~l~~~~--~~~~~D~V~~~~~~~~~g~~---~~~-------~~~  120 (188)
T TIGR00438        88 -----------------------------------NKIRERV--GDDKVDVVMSDAAPNISGYW---DID-------HLR  120 (188)
T ss_pred             -----------------------------------HHHHHHh--CCCCccEEEcCCCCCCCCCc---ccc-------HHH
Confidence                                               0000011  245799999995  331110   000       000


Q ss_pred             cccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCe---eEEEEEEec
Q 016734          272 EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF  344 (384)
Q Consensus       272 E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t---~Rw~~AWsf  344 (384)
                             .......+++.+.++++++|.+..++....++.++...|++. +..+.+.++..|+-   .+.+|+-.|
T Consensus       121 -------~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (188)
T TIGR00438       121 -------SIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FEKVKVTKPQASRKRSAEVYIVAKRF  188 (188)
T ss_pred             -------HHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hceEEEeCCCCCCcccceEEEEEecC
Confidence                   122356677888888888888877777678888999888875 77788888888873   666666443

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.81  E-value=6.2e-08  Score=100.28  Aligned_cols=143  Identities=13%  Similarity=0.065  Sum_probs=96.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|..+..++.... ..+|+|+|+++.+++.+++|+++++ +. .|+++.+|..+                
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~~-~v~~~~~Da~~----------------  312 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-IT-IIETIEGDARS----------------  312 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-CC-eEEEEeCcccc----------------
Confidence            45899999999998888877653 4699999999999999999999997 64 58888877421                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          +.     ..+.||.|+++||+..+.... .+|......+...+.
T Consensus       313 ------------------------------------~~-----~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~~~~~~~~~  350 (445)
T PRK14904        313 ------------------------------------FS-----PEEQPDAILLDAPCTGTGVLG-RRAELRWKLTPEKLA  350 (445)
T ss_pred             ------------------------------------cc-----cCCCCCEEEEcCCCCCcchhh-cCcchhhcCCHHHHH
Confidence                                                00     235799999999986654322 233322111111000


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g  321 (384)
                      .   -...-..|+..+..+++.+|.+   ||-+.+.++-..+...|+++.
T Consensus       351 ~---l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~  397 (445)
T PRK14904        351 E---LVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP  397 (445)
T ss_pred             H---HHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence            0   0123456888888888888865   445555566666777787763

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.81  E-value=2.9e-07  Score=85.71  Aligned_cols=57  Identities=21%  Similarity=0.243  Sum_probs=48.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ..+|||||||+|.++..|+..  +.+++|+|+++.+++.|+++....+ +.+++.+..+|
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d  120 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGD  120 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcC
Confidence            468999999999998888764  4579999999999999999998876 65678888776

>PRK08317 hypothetical protein; Provisional

Probab=98.80  E-value=5.1e-07  Score=83.50  Aligned_cols=76  Identities=20%  Similarity=0.231  Sum_probs=57.4

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |-.+.|..++.+.+..         ....+|||+|||+|.+...++... +..+++|+|+++.+++.|+++...   ...
T Consensus         2 ~~~~~~~~~~~~~~~~---------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~   69 (241)
T PRK08317          2 PDFRRYRARTFELLAV---------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---LGP   69 (241)
T ss_pred             chHHHHHHHHHHHcCC---------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC---CCC
Confidence            4456666666665543         234689999999999998888776 678999999999999999998432   234


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      .+.++..|.
T Consensus        70 ~~~~~~~d~   78 (241)
T PRK08317         70 NVEFVRGDA   78 (241)
T ss_pred             ceEEEeccc
Confidence            678777663

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.79  E-value=9.2e-09  Score=97.58  Aligned_cols=65  Identities=23%  Similarity=0.296  Sum_probs=52.8

Q ss_pred             CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734           88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus        88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      .|-|++||.-....--         .....+|||+|||-|.++..+|..  |+.|+|+|+++++++.|+..+..++
T Consensus        41 N~~rl~~i~~~~~~~~---------~l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~g  105 (243)
T COG2227          41 NPLRLDYIREVARLRF---------DLPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESG  105 (243)
T ss_pred             ccchhhhhhhhhhccc---------CCCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcc
Confidence            4779888875553210         124679999999999999888854  5899999999999999999999887

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.79  E-value=3.1e-08  Score=99.73  Aligned_cols=89  Identities=11%  Similarity=0.244  Sum_probs=65.2

Q ss_pred             cEEEecCCCcc-CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHH
Q 016734           75 LNWWIPDGQLC-PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE  153 (384)
Q Consensus        75 l~~~vp~~~Li-PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~  153 (384)
                      +.+.++++.+. |-....+.++.++.+.+..          .+.++||+|||+|.+++.|+...  .+|+|+|+++.|++
T Consensus       166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~----------~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~  233 (353)
T TIGR02143       166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQG----------SKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVN  233 (353)
T ss_pred             EEEEECCCCcccCCHHHHHHHHHHHHHHhhc----------CCCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHH
Confidence            34444554443 1111236667788777642          11369999999999999888664  38999999999999


Q ss_pred             HHHHHHHHCCCCCCceEEEEcCCC
Q 016734          154 WAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       154 ~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .|++|++.|+ ++ +++++.+|..
T Consensus       234 ~a~~n~~~~~-~~-~v~~~~~d~~  255 (353)
T TIGR02143       234 AAQYNIAANN-ID-NVQIIRMSAE  255 (353)
T ss_pred             HHHHHHHHcC-CC-cEEEEEcCHH
Confidence            9999999998 65 5999988853

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.77  E-value=7.6e-08  Score=91.91  Aligned_cols=60  Identities=25%  Similarity=0.287  Sum_probs=54.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+.+|||+|||||-++..+++.....+|+|+|+|+.||+.|++-+..-+ ..+ |+++++|.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dA  110 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDA  110 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEech
Confidence            4579999999999999999988888899999999999999999998776 555 99999984

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.77  E-value=9.1e-08  Score=91.20  Aligned_cols=55  Identities=18%  Similarity=0.121  Sum_probs=46.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++...++.+|+|+|+++.+++.|+++..       ++.++.+|.
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~~~d~   85 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFVEADI   85 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEEECch
Confidence            3468999999999999889888888999999999999999987641       366776663

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.76  E-value=2.4e-07  Score=84.77  Aligned_cols=80  Identities=20%  Similarity=0.368  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      +..|.|+.|......+     +....+|||+|||.|.+..-|+++......+|||.++.|+++|+..+++++ +++.|++
T Consensus        49 ~riv~wl~d~~~~~rv-----~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f  122 (227)
T KOG1271|consen   49 ERIVDWLKDLIVISRV-----SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG-FSNEIRF  122 (227)
T ss_pred             HHHHHHHHhhhhhhhh-----cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC-CCcceeE
Confidence            4578899988763221     122338999999999999889887766679999999999999999999998 8988999


Q ss_pred             EEcCCC
Q 016734          172 RKVDNS  177 (384)
Q Consensus       172 ~~~d~~  177 (384)
                      .+.|+.
T Consensus       123 ~q~DI~  128 (227)
T KOG1271|consen  123 QQLDIT  128 (227)
T ss_pred             EEeecc
Confidence            998865

>PRK06922 hypothetical protein; Provisional

Probab=98.75  E-value=1.9e-07  Score=99.94  Aligned_cols=58  Identities=14%  Similarity=0.207  Sum_probs=50.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.....++...++.+++|+|+++.+++.|+++...++   .++.++.+|.
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa  476 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDA  476 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcch
Confidence            468999999999998888888899999999999999999999886554   2577777764

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.75  E-value=3.8e-08  Score=99.15  Aligned_cols=60  Identities=22%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             CeEEEECCcccHHHHHHHhhccC--------------------------------C-------EEEEEeCcHHHHHHHHH
Q 016734          117 VKGFDIGTGANCIYPLLGASLLG--------------------------------W-------SFVGSDMTDVALEWAEK  157 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~--------------------------------~-------~v~gvDid~~al~~A~~  157 (384)
                      ..++|-=||||.|.+-.|...++                                +       .++|+|||+.+++.|+.
T Consensus       193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~  272 (381)
T COG0116         193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA  272 (381)
T ss_pred             CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence            47999999999998876654421                                1       37899999999999999


Q ss_pred             HHHHCCCCCCceEEEEcCCC
Q 016734          158 NVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       158 Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      |++..+ +.+.|+|.+.|..
T Consensus       273 NA~~AG-v~d~I~f~~~d~~  291 (381)
T COG0116         273 NARAAG-VGDLIEFKQADAT  291 (381)
T ss_pred             HHHhcC-CCceEEEEEcchh
Confidence            999998 8999999999854

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.75  E-value=2.7e-07  Score=87.74  Aligned_cols=42  Identities=17%  Similarity=0.156  Sum_probs=36.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni  159 (384)
                      ..+|||||||+|.+...++.  .+.+++|+|+|+.+++.|+++.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~   84 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKD   84 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhC
Confidence            46899999999988777764  4689999999999999998874

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.75  E-value=2.6e-07  Score=90.62  Aligned_cols=61  Identities=15%  Similarity=0.106  Sum_probs=55.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...++||||||+|.++..+++++|+.+++++|. +.+++.|++|++..+ +.++|+++.+|..
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~  209 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIY  209 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCcc
Confidence            346999999999999999999999999999998 789999999999998 8889999998853

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK04266 fibrillarin; Provisional

Probab=98.75  E-value=1.4e-06  Score=82.60  Aligned_cols=57  Identities=7%  Similarity=-0.043  Sum_probs=47.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.+...|+...+..+|+|+|+++.+++.+.++++..    .+|.++.+|.
T Consensus        73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~  129 (226)
T PRK04266         73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADA  129 (226)
T ss_pred             CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCC
Confidence            45899999999999988887765568999999999999888887653    2477887774

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.74  E-value=5.6e-08  Score=102.46  Aligned_cols=59  Identities=17%  Similarity=0.091  Sum_probs=45.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc--------CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL--------GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~--------~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ...+|||.|||+|++...++...+        ...++|+|||+.++..|+.|+...+.+  .+.+...|
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~--~~~i~~~d   97 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL--EINVINFN   97 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC--Cceeeecc
Confidence            456899999999999888776553        257999999999999999999876421  24555444

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.74  E-value=1.4e-07  Score=74.64  Aligned_cols=51  Identities=31%  Similarity=0.436  Sum_probs=41.9

Q ss_pred             EEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       120 LDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ||+|||+|.....|++. ++.+++|+|+++.+++.|+++....+     +.++.+|.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~-----~~~~~~d~   51 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEG-----VSFRQGDA   51 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTST-----EEEEESBT
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccC-----chheeehH
Confidence            89999999999888877 88999999999999999999886553     55777764

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK03612 spermidine synthase; Provisional

Probab=98.73  E-value=5.9e-08  Score=102.41  Aligned_cols=136  Identities=11%  Similarity=0.032  Sum_probs=88.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCC----CCC-CceEEEEcCCCCCCCccccccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNP----HIS-ELIEIRKVDNSESTPSIQESLT  188 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~----~l~-~~I~~~~~d~~~~~p~~~~~~~  188 (384)
                      ++.+|||||||+|.+...+++ .+. .+++++|+|+++++.|++|.....    .++ ++++++.+|..+          
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~----------  365 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN----------  365 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH----------
Confidence            456899999999998877765 454 699999999999999999642111    122 478888877421          


Q ss_pred             CCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCC
Q 016734          189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGG  268 (384)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g  268 (384)
                                                                .+.   ...++||+|++|+|.-..       |.     
T Consensus       366 ------------------------------------------~l~---~~~~~fDvIi~D~~~~~~-------~~-----  388 (521)
T PRK03612        366 ------------------------------------------WLR---KLAEKFDVIIVDLPDPSN-------PA-----  388 (521)
T ss_pred             ------------------------------------------HHH---hCCCCCCEEEEeCCCCCC-------cc-----
Confidence                                                      111   124689999999875321       10     


Q ss_pred             CcccccccCchHHHHHHHHHHHHHhhccCeEEEEEec----CCCCHHHHHHHHHHcCCeEEEEE
Q 016734          269 TPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG----RKSNLKFLISKLRKVGVTIVKTT  328 (384)
Q Consensus       269 ~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg----k~~~l~~l~~~L~~~g~~~v~~~  328 (384)
                       ...        .+-..+++...+.++++|.+.+..+    ....+..+.+.|++.|+ .+...
T Consensus       389 -~~~--------L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~  442 (521)
T PRK03612        389 -LGK--------LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPY  442 (521)
T ss_pred             -hhc--------cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEE
Confidence             000        1123334455567788888766433    24446778889999999 44443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.73  E-value=7.4e-08  Score=89.79  Aligned_cols=53  Identities=17%  Similarity=0.122  Sum_probs=43.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ..+|||||||+|.+...|+...++.+++|+|+|+.|++.|+++..       .+.++.+|
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d   96 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGS   96 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEee
Confidence            457999999999999888877778899999999999999988642       24556655

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.73  E-value=6.9e-07  Score=83.78  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=45.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ..+|||||||+|.++..++..  +.+++++|+++.+++.|++++..++ +  .+.++..+
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~--~~~~~~~~  103 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESG-L--KIDYRQTT  103 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcC-C--ceEEEecC
Confidence            468999999999998777754  5789999999999999999998775 3  46666654

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.72  E-value=4.2e-07  Score=82.13  Aligned_cols=151  Identities=14%  Similarity=0.107  Sum_probs=84.5

Q ss_pred             eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccc
Q 016734          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESN  197 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~  197 (384)
                      .|+|++||.|.-.+.+|..+  .+|+|+|+|+..+++|+.|++-.| ++++|.++++|..+                   
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~-------------------   59 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFE-------------------   59 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHH-------------------
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHH-------------------
Confidence            69999999999998998763  479999999999999999999998 88999999998532                   


Q ss_pred             cccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccC
Q 016734          198 MDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSG  277 (384)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~G  277 (384)
                                                       ++..+. ....||+|++.||+--..-...  +  .+.-. ..| .+ 
T Consensus        60 ---------------------------------~~~~~~-~~~~~D~vFlSPPWGGp~Y~~~--~--~fdL~-~~~-~p-   98 (163)
T PF09445_consen   60 ---------------------------------LLKRLK-SNKIFDVVFLSPPWGGPSYSKK--D--VFDLE-KSM-QP-   98 (163)
T ss_dssp             ---------------------------------HGGGB-------SEEEE---BSSGGGGGS--S--SB-TT-TSS-SS-
T ss_pred             ---------------------------------HHhhcc-ccccccEEEECCCCCCcccccc--C--ccCHH-Hcc-CC-
Confidence                                             011110 1122899999999974321110  0  01000 011 11 


Q ss_pred             chHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcC--CeEEEEEEeeCCCeeE
Q 016734          278 GERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG--VTIVKTTEFVQGQTCR  337 (384)
Q Consensus       278 Gel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g--~~~v~~~e~~qG~t~R  337 (384)
                        + =+..|++.+..+-..+.   ..+.|..++.+|.+++++..  -..+++.+........
T Consensus        99 --~-~~~~l~~~~~~~t~nv~---l~LPRn~dl~ql~~~~~~l~~~~~~~~v~~~~~n~~~k  154 (163)
T PF09445_consen   99 --F-NLEDLLKAARKITPNVV---LFLPRNSDLNQLSQLTRELFGPSKKCEVEQNYLNGKLK  154 (163)
T ss_dssp             -----HHHHHHHHHHH-S-EE---EEEETTB-HHHHHHT----T-TTEEEEEEEEEETTEEE
T ss_pred             --C-CHHHHHHHHHhhCCCEE---EEeCCCCCHHHHHHHhccccCCCCeEEEEEehcCCeeE
Confidence              0 14455556655554444   45888999999988865542  2445665554443333

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.71  E-value=3.3e-07  Score=71.65  Aligned_cols=56  Identities=29%  Similarity=0.402  Sum_probs=44.6

Q ss_pred             eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +++|+|||+|.+...++. ....+++++|+++.++..++++...+  ...++.++..|.
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   56 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDA   56 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc--cccceEEEEcCh
Confidence            489999999998877776 56789999999999999998754443  335688887764

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.71  E-value=1.9e-07  Score=91.54  Aligned_cols=61  Identities=16%  Similarity=0.111  Sum_probs=44.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhh-------ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC-ceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS-------LLGWSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~-------~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~-~I~~~~~d~  176 (384)
                      ...+|+|.+||+|.+...+...       ....+++|+|+++.++.+|+.|+..++ ... .+.+..+|.
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~-~~~~~~~i~~~d~  114 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG-IDNSNINIIQGDS  114 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT-HHCBGCEEEES-T
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc-ccccccccccccc
Confidence            3458999999999987666553       367899999999999999999998775 332 245666653

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.65  E-value=3.2e-06  Score=77.76  Aligned_cols=58  Identities=24%  Similarity=0.232  Sum_probs=48.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||+|||+|.+...++...+. .+++|+|+++.+++.++++..    ...++.++.+|.
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~----~~~~i~~~~~d~   97 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE----LPLNIEFIQADA   97 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc----cCCCceEEecch
Confidence            3568999999999998888877765 799999999999999999875    234688887764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.64  E-value=1.7e-07  Score=91.39  Aligned_cols=62  Identities=23%  Similarity=0.379  Sum_probs=56.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ...++||||||-|.+.+.+|+++ +++|+|+++|++.++.|++-++.-+ ++++|+++.+|..+
T Consensus        72 ~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~rd  133 (283)
T COG2230          72 PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYRD  133 (283)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEeccccc
Confidence            45699999999999998888765 9999999999999999999999998 89999999998654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.63  E-value=5.9e-07  Score=83.29  Aligned_cols=55  Identities=20%  Similarity=0.221  Sum_probs=46.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.+|||||||+|.+...++...+..+++|+|+++.+++.|+.+..      +++.++.+|.
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~   89 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDA   89 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecch
Confidence            468999999999999999888888899999999999999987653      2467777764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.62  E-value=1.6e-07  Score=89.88  Aligned_cols=57  Identities=16%  Similarity=0.096  Sum_probs=47.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.+...|+.+.+  +++|+|+|+.+++.++.+...    .+++.++++|..
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~   85 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL----YERLEVIEGDAL   85 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc----CCcEEEEECchh
Confidence            346899999999999999987653  699999999999999988743    236888888754

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.62  E-value=1.2e-06  Score=87.30  Aligned_cols=60  Identities=15%  Similarity=-0.010  Sum_probs=43.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|..+..++...+. .|+|+|+++.++..++...+..+ ...+|.++.++.
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~  181 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGI  181 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCH
Confidence            3468999999999988877766443 69999999999876655443332 234688877663

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.62  E-value=4.3e-07  Score=84.91  Aligned_cols=59  Identities=20%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.++..++... ++.+|+|+|+++++++.|++|++.++ +. +|+++.+|.
T Consensus        77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~~-~v~~~~gd~  136 (212)
T PRK13942         77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-YD-NVEVIVGDG  136 (212)
T ss_pred             cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CeEEEECCc
Confidence            4589999999999998888764 34699999999999999999999887 53 699998874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=8.2e-07  Score=85.00  Aligned_cols=128  Identities=15%  Similarity=0.190  Sum_probs=99.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhh-ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~-~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||.|||||+++..|+.. .+.-+|+..|+.++.++.|++|++..+ +.++|.+..+|+.+               
T Consensus        94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~---------------  157 (256)
T COG2519          94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVRE---------------  157 (256)
T ss_pred             CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEeccccc---------------
Confidence            3569999999999999999854 455699999999999999999999987 88889998888653               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                              ..  .++.||.++--=|          +|           
T Consensus       158 ----------------------------------------~~--~~~~vDav~LDmp----------~P-----------  174 (256)
T COG2519         158 ----------------------------------------GI--DEEDVDAVFLDLP----------DP-----------  174 (256)
T ss_pred             ----------------------------------------cc--cccccCEEEEcCC----------Ch-----------
Confidence                                                    00  1235676654311          12           


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEee
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~  331 (384)
                                -+.++.....++.++++.+.+.--.|++.+.+.|++.|+.++++.|..
T Consensus       175 ----------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l  222 (256)
T COG2519         175 ----------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETL  222 (256)
T ss_pred             ----------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheee
Confidence                      122344555678889999999888899999999999999999998876

>PRK06202 hypothetical protein; Provisional

Probab=98.59  E-value=1.3e-07  Score=89.08  Aligned_cols=49  Identities=20%  Similarity=0.145  Sum_probs=40.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhh----ccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~----~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      ...+|||||||+|.++..|+..    .++++++|+|+++.+++.|+++...++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~  112 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG  112 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC
Confidence            4568999999999988777753    346799999999999999998865443

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.59  E-value=7.1e-07  Score=82.88  Aligned_cols=58  Identities=16%  Similarity=0.192  Sum_probs=48.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||+|||+|..+..++...  .+++++|+++.+++.|++|++.++ +.+ ++++.+|.
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~-~~~-v~~~~~d~  135 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG-LHN-VSVRHGDG  135 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC-CCc-eEEEECCc
Confidence            34689999999999887776553  389999999999999999999987 653 88888763

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.57  E-value=8.3e-07  Score=90.37  Aligned_cols=54  Identities=24%  Similarity=0.331  Sum_probs=44.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ..+|||||||+|.++..++.. .+++|+|+|+|+++++.|+++++  + +  .+++...|
T Consensus       168 g~rVLDIGcG~G~~a~~la~~-~g~~V~giDlS~~~l~~A~~~~~--~-l--~v~~~~~D  221 (383)
T PRK11705        168 GMRVLDIGCGWGGLARYAAEH-YGVSVVGVTISAEQQKLAQERCA--G-L--PVEIRLQD  221 (383)
T ss_pred             CCEEEEeCCCccHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhc--c-C--eEEEEECc
Confidence            458999999999998877755 47899999999999999999984  2 3  26666554

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.56  E-value=4e-06  Score=80.60  Aligned_cols=132  Identities=17%  Similarity=0.219  Sum_probs=95.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||.|||||++...|+... |.-+|+..|+.++.++.|++|++.++ +.+.|++.+.|+.+.              
T Consensus        40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~--------------  104 (247)
T PF08704_consen   40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEE--------------  104 (247)
T ss_dssp             TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG--------------
T ss_pred             CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecc--------------
Confidence            35689999999999999998654 66699999999999999999999998 888999999986420              


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                              +             |..               .   .+..+|.|+--=|          +|..+        
T Consensus       105 --------g-------------~~~---------------~---~~~~~DavfLDlp----------~Pw~~--------  127 (247)
T PF08704_consen  105 --------G-------------FDE---------------E---LESDFDAVFLDLP----------DPWEA--------  127 (247)
T ss_dssp             -----------------------ST---------------T----TTSEEEEEEESS----------SGGGG--------
T ss_pred             --------c-------------ccc---------------c---ccCcccEEEEeCC----------CHHHH--------
Confidence                    0             000               0   1245776643211          23221        


Q ss_pred             cccCchHHHHHHHHHHHHHhh-ccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEee
Q 016734          274 VCSGGERAFITRIIEDSVALK-QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~-~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~  331 (384)
                               |    ..+...+ +.+|++.+.+.--.|+..+.+.|++.||.++++.|..
T Consensus       128 ---------i----~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~Evl  173 (247)
T PF08704_consen  128 ---------I----PHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVEVL  173 (247)
T ss_dssp             ---------H----HHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ---------H----HHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEEEE
Confidence                     1    1222234 7899999999988899999999999999999999986

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.55  E-value=4.3e-07  Score=92.53  Aligned_cols=132  Identities=19%  Similarity=0.180  Sum_probs=94.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+.|=||..++..|  ..|+ +|++||+|..++++|++|++.|+.-.+++.++.+|..+                
T Consensus       218 GkrvLNlFsYTGgfSv~Aa--~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~----------------  279 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAA--LGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK----------------  279 (393)
T ss_pred             CCeEEEecccCcHHHHHHH--hcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH----------------
Confidence            5689999999998875554  4566 99999999999999999999999335678999888542                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          ++......+++||+|+..||=|.......      +.       
T Consensus       280 ------------------------------------~l~~~~~~g~~fDlIilDPPsF~r~k~~~------~~-------  310 (393)
T COG1092         280 ------------------------------------WLRKAERRGEKFDLIILDPPSFARSKKQE------FS-------  310 (393)
T ss_pred             ------------------------------------HHHHHHhcCCcccEEEECCcccccCcccc------hh-------
Confidence                                                22223334679999999999886432211      11       


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEE-EEEecCCCCHHHHHHHHH
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLR  318 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~-t~~vgk~~~l~~l~~~L~  318 (384)
                          ...-+..|+..+.+++.++|.+ ++-....-+.+.+++.+.
T Consensus       311 ----~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~  351 (393)
T COG1092         311 ----AQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIA  351 (393)
T ss_pred             ----HHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHH
Confidence                1345788999999988887764 444444445555555443

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.55  E-value=1.8e-07  Score=95.17  Aligned_cols=58  Identities=14%  Similarity=-0.031  Sum_probs=49.8

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+|||++||+|.+++.++.+....+|+++|+|+.|++.+++|++.|+ +. .+.++++|.
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-~~-~~~v~~~Da  116 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-LE-NEKVFNKDA  116 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-ceEEEhhhH
Confidence            57999999999999999877655589999999999999999999998 65 366776663

>PRK01581 speE spermidine synthase; Validated

Probab=98.55  E-value=3.9e-06  Score=84.69  Aligned_cols=81  Identities=10%  Similarity=0.062  Sum_probs=53.2

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH-----HHHCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN-----VKSNP  163 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N-----i~~n~  163 (384)
                      .+...|-+.+........       ..+.+||+||||.|.....+.+..+..+|++||||+++++.|++.     +....
T Consensus       131 ~DE~iYHE~Lvhp~m~~h-------~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~  203 (374)
T PRK01581        131 VDEQIYHEALVHPIMSKV-------IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA  203 (374)
T ss_pred             ccHHHHHHHHHHHHHHhC-------CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc
Confidence            344455555555332211       245699999999998766666443456999999999999999962     11111


Q ss_pred             CCCCceEEEEcCC
Q 016734          164 HISELIEIRKVDN  176 (384)
Q Consensus       164 ~l~~~I~~~~~d~  176 (384)
                      .-..+++++.+|.
T Consensus       204 ~~DpRV~vvi~Da  216 (374)
T PRK01581        204 FFDNRVNVHVCDA  216 (374)
T ss_pred             CCCCceEEEECcH
Confidence            0135788888874

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=3e-07  Score=94.90  Aligned_cols=90  Identities=18%  Similarity=0.177  Sum_probs=72.7

Q ss_pred             CcEEEecCCCccCCCcC-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        74 gl~~~vp~~~LiPrvP~-r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      |+.|.++++.+.=.-|. .+.++.|+.+.+...         ...++||+=||.|.+++.||.  ...+|+|+|++++|+
T Consensus       260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~---------~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV  328 (432)
T COG2265         260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELA---------GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAV  328 (432)
T ss_pred             ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhc---------CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHH
Confidence            67888888655543333 678889999988652         345899999999999999983  356899999999999


Q ss_pred             HHHHHHHHHCCCCCCceEEEEcCC
Q 016734          153 EWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.|++|++.|+ +.+ +.+..++.
T Consensus       329 ~~A~~NA~~n~-i~N-~~f~~~~a  350 (432)
T COG2265         329 EAAQENAAANG-IDN-VEFIAGDA  350 (432)
T ss_pred             HHHHHHHHHcC-CCc-EEEEeCCH
Confidence            99999999998 766 88887763

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.54  E-value=8.6e-07  Score=81.30  Aligned_cols=51  Identities=14%  Similarity=0.132  Sum_probs=39.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...++.. .+..++|+|+++++++.|+.    .+     ++++.+|.
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~----~~-----~~~~~~d~   64 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA----RG-----VNVIQGDL   64 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH----cC-----CeEEEEEh
Confidence            358999999999998777654 46788999999999988854    22     55666653

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.53  E-value=3e-07  Score=86.05  Aligned_cols=75  Identities=17%  Similarity=0.206  Sum_probs=61.6

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |+...++..+....            .+.+||+||||+|.-++.+|...+ +.+++.+|++++..+.|++|+++.+ +.+
T Consensus        31 ~~~g~lL~~l~~~~------------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~   97 (205)
T PF01596_consen   31 PETGQLLQMLVRLT------------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDD   97 (205)
T ss_dssp             HHHHHHHHHHHHHH------------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGG
T ss_pred             HHHHHHHHHHHHhc------------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCC
Confidence            45555555555443            356999999999999999998776 6899999999999999999999998 899


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      +|+++.+|.
T Consensus        98 ~I~~~~gda  106 (205)
T PF01596_consen   98 RIEVIEGDA  106 (205)
T ss_dssp             GEEEEES-H
T ss_pred             cEEEEEecc
Confidence            999999874

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00452 methyltransferase, putative

Probab=98.50  E-value=3.4e-06  Score=83.83  Aligned_cols=135  Identities=14%  Similarity=0.052  Sum_probs=71.1

Q ss_pred             CCCHHHHHhhCCCcccce-eccCCCCccccCC---CHHHHHHHHHHHhhccCCc---EEEecCCCccCCCcCHHHHHHHH
Q 016734           26 PPDFALLASLYPSFEPFV-FYSRDGRPRIDWT---DFNATRELTRVLLLHDHGL---NWWIPDGQLCPTVPNRSNYIHWI   98 (384)
Q Consensus        26 ~~df~~La~~~p~l~~~v-~~~~~g~~~idf~---~~~av~~Lt~alL~~~fgl---~~~vp~~~LiPrvP~r~~yi~~i   98 (384)
                      -+.+....++-|.+.+-- ..+.  .++|.-.   +....+.|... |+..++-   .|.+ .++.+|. -.| ..+.|.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-l~~l~p~~~~~~~l-~~~~~~~-e~~-s~~~~~  111 (314)
T TIGR00452        38 FKQWSNAVEFLPEIKPYRLDLLM--LVCNDKSNPLSAGQIKRILEE-IMALMPWRKGPFEL-SGIKIDS-EWR-SDIKWD  111 (314)
T ss_pred             HHHHHHHHHhcCCCCcCeeeccC--ccccCCCCCCCHHHHHHHHHH-HHhcCCCCCCCccc-ccccCCH-HHH-HHHHHH
Confidence            345666667777665432 2211  1233222   33445556543 4444432   3443 3566655 222 222222


Q ss_pred             HHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734           99 EDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus        99 ~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      . ++...  .    .....+|||||||+|.+...++...+ ..|+|+|.++.++..++...+... ...++.+...+
T Consensus       112 ~-~l~~l--~----~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~  179 (314)
T TIGR00452       112 R-VLPHL--S----PLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLG  179 (314)
T ss_pred             H-HHHhc--C----CCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECC
Confidence            1 11110  0    12346899999999998776665433 379999999999887644333222 22356666554

Known examples to date are restricted to the proteobacteria.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.50  E-value=4.3e-07  Score=88.43  Aligned_cols=61  Identities=18%  Similarity=0.316  Sum_probs=50.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||.|.++..++.++ +++|+|+.+|++..+.|++.++..+ ++++++++..|..
T Consensus        62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~~  122 (273)
T PF02353_consen   62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDYR  122 (273)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-GG
T ss_pred             CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeecc
Confidence            35689999999999999998876 8999999999999999999999998 8999999998754

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN03075 nicotianamine synthase; Provisional

Probab=98.49  E-value=5e-07  Score=88.83  Aligned_cols=62  Identities=23%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             CCCeEEEECCcccHHHHH-HH-hhccCCEEEEEeCcHHHHHHHHHHHHH-CCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPL-LG-ASLLGWSFVGSDMTDVALEWAEKNVKS-NPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~-La-~~~~~~~v~gvDid~~al~~A~~Ni~~-n~~l~~~I~~~~~d~~  177 (384)
                      .+.+|+|||||.|-+..+ ++ ...++.+|+|+|+|+++++.|+++++. .+ +.++|+|..+|..
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g-L~~rV~F~~~Da~  187 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD-LSKRMFFHTADVM  187 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC-ccCCcEEEECchh
Confidence            467899999998854333 33 356889999999999999999999965 55 8889999998854

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.48  E-value=1.4e-06  Score=85.37  Aligned_cols=131  Identities=18%  Similarity=0.251  Sum_probs=85.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCCCCC-CceEEEEcCCCCCCCcccccccCCccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~~l~-~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ..+|||+-|=+|..++..+  ..|+ +|+.||.|..|+++|++|++.|+ +. ++++++..|..+               
T Consensus       124 gkrvLnlFsYTGgfsv~Aa--~gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~---------------  185 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAA--AGGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFK---------------  185 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHH--HTTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHH---------------
T ss_pred             CCceEEecCCCCHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHH---------------
Confidence            4699999999998876544  3444 89999999999999999999998 65 689999887431               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                           .+..+ ...++||+||+.||=|....         +     .+
T Consensus       186 -------------------------------------~l~~~-~~~~~fD~IIlDPPsF~k~~---------~-----~~  213 (286)
T PF10672_consen  186 -------------------------------------FLKRL-KKGGRFDLIILDPPSFAKSK---------F-----DL  213 (286)
T ss_dssp             -------------------------------------HHHHH-HHTT-EEEEEE--SSEESST---------C-----EH
T ss_pred             -------------------------------------HHHHH-hcCCCCCEEEECCCCCCCCH---------H-----HH
Confidence                                                 11111 23468999999999774210         0     00


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeE-EEEEecCCCCHHHHHHHHHHcCC
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRW-YTSMVGRKSNLKFLISKLRKVGV  322 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w-~t~~vgk~~~l~~l~~~L~~~g~  322 (384)
                            ..=+.+|+..+..+++++|. +++-.+..-+.+.+++.+++.+-
T Consensus       214 ------~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~  257 (286)
T PF10672_consen  214 ------ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAR  257 (286)
T ss_dssp             ------HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCc
Confidence                  12366788889999888886 45555544456777777776653

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.46  E-value=1.2e-05  Score=74.73  Aligned_cols=72  Identities=24%  Similarity=0.334  Sum_probs=52.5

Q ss_pred             HHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEc
Q 016734           95 IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV  174 (384)
Q Consensus        95 i~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~  174 (384)
                      +.|+.+.+.....     .....+|||+|||+|.+...++..  +..++|+|+++.+++.|++++..++ .. ++.+...
T Consensus        30 ~~~i~~~~~~~~~-----~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~~-~~~~~~~  100 (224)
T TIGR01983        30 LDYIRDTIRKNKK-----PLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDP-LL-KIEYRCT  100 (224)
T ss_pred             HHHHHHHHHhccc-----CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcC-CC-ceEEEeC
Confidence            4566666653210     113568999999999988777654  4579999999999999999998876 32 4676665


Q ss_pred             C
Q 016734          175 D  175 (384)
Q Consensus       175 d  175 (384)
                      +
T Consensus       101 d  101 (224)
T TIGR01983       101 S  101 (224)
T ss_pred             C
Confidence            5

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.46  E-value=9e-07  Score=83.55  Aligned_cols=75  Identities=16%  Similarity=0.190  Sum_probs=66.0

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |++-.|+.++..+.            ..++||+|||+.|.-++.+|...| +.+++.+|++++..+.|++|+++.+ +.+
T Consensus        45 ~e~g~~L~~L~~~~------------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~  111 (219)
T COG4122          45 PETGALLRLLARLS------------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-VDD  111 (219)
T ss_pred             hhHHHHHHHHHHhc------------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-Ccc
Confidence            88988888877654            356899999999999999998888 7799999999999999999999998 888


Q ss_pred             ceEEEEc-CC
Q 016734          168 LIEIRKV-DN  176 (384)
Q Consensus       168 ~I~~~~~-d~  176 (384)
                      +|.++.+ |.
T Consensus       112 ~i~~~~~gda  121 (219)
T COG4122         112 RIELLLGGDA  121 (219)
T ss_pred             eEEEEecCcH
Confidence            9998884 53

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.46  E-value=2e-06  Score=83.17  Aligned_cols=54  Identities=24%  Similarity=0.374  Sum_probs=42.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc---CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL---GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~---~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.+...|+...+   ++.++|+|+|+.+++.|+++.   .    .+.+..+|.
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~----~~~~~~~d~  142 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---P----QVTFCVASS  142 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---C----CCeEEEeec
Confidence            35799999999999888877655   358999999999999997652   1    366776663

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.46  E-value=1.1e-06  Score=87.53  Aligned_cols=59  Identities=19%  Similarity=0.165  Sum_probs=50.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.++..++.... ...|+|+|+++++++.|++|++.++ + +++.++.+|.
T Consensus        81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~  140 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDG  140 (322)
T ss_pred             CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCCh
Confidence            45899999999999988887664 2479999999999999999999987 5 4688888764

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.46  E-value=9.1e-07  Score=89.09  Aligned_cols=89  Identities=21%  Similarity=0.245  Sum_probs=62.6

Q ss_pred             CcEEEecCCCccCCC-cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           74 GLNWWIPDGQLCPTV-PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        74 gl~~~vp~~~LiPrv-P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      ++.|.++++.+.=.- ...+.++.++.+++...          +..+||+.||+|.+++.||...  .+|+|||+++.|+
T Consensus       164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~----------~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av  231 (352)
T PF05958_consen  164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLS----------KGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAV  231 (352)
T ss_dssp             TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-----------TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHH
T ss_pred             ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcC----------CCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHH
Confidence            566777777665432 23566777787777531          2279999999999999998543  4899999999999


Q ss_pred             HHHHHHHHHCCCCCCceEEEEcCC
Q 016734          153 EWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.|++|++.|+ +. +++++.++.
T Consensus       232 ~~A~~Na~~N~-i~-n~~f~~~~~  253 (352)
T PF05958_consen  232 EDARENAKLNG-ID-NVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHHHTT----SEEEEE--S
T ss_pred             HHHHHHHHHcC-CC-cceEEEeec
Confidence            99999999998 65 589988763

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.45  E-value=1.2e-06  Score=81.08  Aligned_cols=58  Identities=24%  Similarity=0.353  Sum_probs=46.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ++.++||||||.|--++.||.+  |+.|+|+|+|+.+++.+++.++..+ ++  |+....|..
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~-l~--i~~~~~Dl~   87 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEG-LD--IRTRVADLN   87 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT--T--EEEEE-BGC
T ss_pred             CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcC-ce--eEEEEecch
Confidence            4579999999999999999854  8899999999999999999888887 65  888887753

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02476 O-methyltransferase

Probab=98.45  E-value=8.1e-07  Score=86.73  Aligned_cols=76  Identities=12%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |+...++.++..+.            ...+|||||||+|..++.+|...+ +-+++++|+++++++.|++|+++.+ +.+
T Consensus       104 ~~~g~lL~~L~~~~------------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~  170 (278)
T PLN02476        104 PDQAQLLAMLVQIL------------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSH  170 (278)
T ss_pred             HHHHHHHHHHHHhc------------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCC
Confidence            56666666555543            346899999999999998887664 5589999999999999999999998 889


Q ss_pred             ceEEEEcCCC
Q 016734          168 LIEIRKVDNS  177 (384)
Q Consensus       168 ~I~~~~~d~~  177 (384)
                      +|+++.+|..
T Consensus       171 ~I~li~GdA~  180 (278)
T PLN02476        171 KVNVKHGLAA  180 (278)
T ss_pred             cEEEEEcCHH
Confidence            9999999854

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.44  E-value=9.4e-07  Score=82.42  Aligned_cols=126  Identities=15%  Similarity=0.176  Sum_probs=74.3

Q ss_pred             HHHHhhCCCcccceeccC--CCCccccCCCHHHHH----HHHHHHhhccCCcEE--EecCCCccCCC-cCHHHHHHHHHH
Q 016734           30 ALLASLYPSFEPFVFYSR--DGRPRIDWTDFNATR----ELTRVLLLHDHGLNW--WIPDGQLCPTV-PNRSNYIHWIED  100 (384)
Q Consensus        30 ~~La~~~p~l~~~v~~~~--~g~~~idf~~~~av~----~Lt~alL~~~fgl~~--~vp~~~LiPrv-P~r~~yi~~i~d  100 (384)
                      +.+.+++|..+.-+.+..  .|..+.    +.-.-    .-+. ......|+.|  ++..-.+.|+. .||.    .+.+
T Consensus        27 ~~i~~~~~~vktV~~k~~~v~g~~R~----~~~~~LaG~~~~~-t~~~E~G~~f~~D~~kvyfs~rl~~Er~----Ri~~   97 (200)
T PF02475_consen   27 EAILEKNPNVKTVYNKIGIVEGEFRT----PDLEVLAGEPRTE-TIHKENGIRFKVDLSKVYFSPRLSTERR----RIAN   97 (200)
T ss_dssp             HHHHHHC-T-SEEEEE-S-SBTTTTB------EEEEEES--SE-EEEEETTEEEEEETTTS---GGGHHHHH----HHHT
T ss_pred             HHHHHhccCceEEEEecCcCCCCccc----ccEEEEeCCCceE-EEEEeCCEEEEEccceEEEccccHHHHH----HHHh
Confidence            456777777777665422  233222    11000    0000 1244577764  55666778883 2232    1222


Q ss_pred             HhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          101 LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       101 ll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.           .....|+|+.||-|.+++.+|+......|+|+|++|.|+++.++|++.|+ ++++|.++++|.
T Consensus        98 ~v-----------~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~  161 (200)
T PF02475_consen   98 LV-----------KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDA  161 (200)
T ss_dssp             C-------------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-G
T ss_pred             cC-----------CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCH
Confidence            21           13468999999999999998876677899999999999999999999998 899999999884

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00417 speE spermidine synthase

Probab=98.44  E-value=9.8e-06  Score=78.52  Aligned_cols=95  Identities=12%  Similarity=0.007  Sum_probs=59.7

Q ss_pred             CCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        73 fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      ||.-+.+....-.-. -....|.+.+..+.....       ..+.+||+||||+|.+...++...+..+++++|+|++++
T Consensus        38 ~g~~l~ldg~~q~~~-~~e~~y~e~l~~~~l~~~-------~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi  109 (270)
T TIGR00417        38 FGNVLVLDGVVQTTE-RDEFIYHEMIAHVPLFTH-------PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI  109 (270)
T ss_pred             CceEEEECCcccccC-chHHHHHHHhhhhHhhcC-------CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH
Confidence            455444544333222 223456555554322111       234599999999999887776654467899999999999


Q ss_pred             HHHHHHHHHCC-CC-CCceEEEEcC
Q 016734          153 EWAEKNVKSNP-HI-SELIEIRKVD  175 (384)
Q Consensus       153 ~~A~~Ni~~n~-~l-~~~I~~~~~d  175 (384)
                      +.|+++....+ .+ ..+++++.+|
T Consensus       110 ~~a~~~~~~~~~~~~~~~v~i~~~D  134 (270)
T TIGR00417       110 ELSKKFLPSLAGSYDDPRVDLQIDD  134 (270)
T ss_pred             HHHHHHhHhhcccccCCceEEEECc
Confidence            99999875432 11 2357776655

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02366 spermidine synthase

Probab=98.42  E-value=2e-05  Score=78.13  Aligned_cols=97  Identities=10%  Similarity=0.056  Sum_probs=66.1

Q ss_pred             cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      .||.-+.+.....+-. ++...|-+.+..+.....       ..+.+||+||||.|.+...+++..+..+|+.+|||+..
T Consensus        56 ~~g~~L~lDg~~q~~~-~de~~Y~e~l~h~~l~~~-------~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~V  127 (308)
T PLN02366         56 TYGKVLVLDGVIQLTE-RDECAYQEMITHLPLCSI-------PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMV  127 (308)
T ss_pred             CCceEEEECCEeeecC-ccHHHHHHHHHHHHHhhC-------CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHH
Confidence            4676666665554444 555566555554432211       24678999999999988777754234689999999999


Q ss_pred             HHHHHHHHHHCC-CC-CCceEEEEcCC
Q 016734          152 LEWAEKNVKSNP-HI-SELIEIRKVDN  176 (384)
Q Consensus       152 l~~A~~Ni~~n~-~l-~~~I~~~~~d~  176 (384)
                      ++.|++.....+ .+ ..|++++.+|.
T Consensus       128 i~~ar~~f~~~~~~~~dpRv~vi~~Da  154 (308)
T PLN02366        128 IDVSKKFFPDLAVGFDDPRVNLHIGDG  154 (308)
T ss_pred             HHHHHHhhhhhccccCCCceEEEEChH
Confidence            999999875421 13 34899998874

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.40  E-value=3.1e-07  Score=88.17  Aligned_cols=52  Identities=29%  Similarity=0.406  Sum_probs=43.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCce
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELI  169 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I  169 (384)
                      ..+|||+|||.|.++.-||.  .+++|+|+|+++++++.|++....+..++..|
T Consensus        90 g~~ilDvGCGgGLLSepLAr--lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~  141 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLAR--LGAQVTGIDASDDMVEVANEHKKMDPVLEGAI  141 (282)
T ss_pred             CceEEEeccCccccchhhHh--hCCeeEeecccHHHHHHHHHhhhcCchhcccc
Confidence            35799999999999988884  46899999999999999999977776444433

>PRK05785 hypothetical protein; Provisional

Probab=98.37  E-value=2.1e-06  Score=81.18  Aligned_cols=42  Identities=14%  Similarity=0.133  Sum_probs=36.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N  158 (384)
                      ..+|||||||+|.++..++... +.+|+|+|+|++|++.|++.
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc
Confidence            4589999999999988888765 67999999999999999753

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.36  E-value=2.4e-06  Score=82.68  Aligned_cols=45  Identities=22%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             CCCeEEEECCcccH----HHHHHHhhcc-----CCEEEEEeCcHHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANC----IYPLLGASLL-----GWSFVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       115 ~~~~vLDIGtGsG~----I~~~La~~~~-----~~~v~gvDid~~al~~A~~Ni  159 (384)
                      .+.+|+|+|||+|-    |+.+|+...+     +++|+|+|+|+.|++.|++.+
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            45799999999995    5555665543     579999999999999999865

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.36  E-value=3.6e-06  Score=87.43  Aligned_cols=55  Identities=13%  Similarity=0.119  Sum_probs=43.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.++..|+..  ..+++|+|+++.+++.|++   .++ ...++.++.+|.
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~---~~~-~~~~i~~~~~d~   92 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNES---ING-HYKNVKFMCADV   92 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHH---Hhc-cCCceEEEEecc
Confidence            458999999999999888865  3589999999999987654   233 334688888874

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=5.2e-06  Score=77.72  Aligned_cols=59  Identities=22%  Similarity=0.312  Sum_probs=51.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||||.-+..|++.- + +|+.+|++++..+.|++|++..+ +.+ |.++++|..
T Consensus        72 ~g~~VLEIGtGsGY~aAvla~l~-~-~V~siEr~~~L~~~A~~~L~~lg-~~n-V~v~~gDG~  130 (209)
T COG2518          72 PGDRVLEIGTGSGYQAAVLARLV-G-RVVSIERIEELAEQARRNLETLG-YEN-VTVRHGDGS  130 (209)
T ss_pred             CCCeEEEECCCchHHHHHHHHHh-C-eEEEEEEcHHHHHHHHHHHHHcC-CCc-eEEEECCcc
Confidence            45689999999999888887543 3 99999999999999999999998 665 999999854

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.32  E-value=7.4e-08  Score=78.31  Aligned_cols=44  Identities=25%  Similarity=0.342  Sum_probs=38.1

Q ss_pred             EEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734          120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus       120 LDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      ||||||+|.+...+...++..+++|+|+|+.+++.|++.+....
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~   44 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG   44 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC
Confidence            79999999999999888899999999999999999998888775

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.32  E-value=7.4e-06  Score=76.88  Aligned_cols=88  Identities=20%  Similarity=0.140  Sum_probs=61.5

Q ss_pred             CcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHH
Q 016734           74 GLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVAL  152 (384)
Q Consensus        74 gl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al  152 (384)
                      +..+.+..+.-+.. |..   +.++.++|.-         ....+|||||||||..+.+|+.... .-+|+++|+++..+
T Consensus        44 d~~l~i~~~~~is~-P~~---~a~~l~~L~l---------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~  110 (209)
T PF01135_consen   44 DRPLPIGCGQTISA-PSM---VARMLEALDL---------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA  110 (209)
T ss_dssp             SS-EEEETTEEE---HHH---HHHHHHHTTC----------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH
T ss_pred             CCCeeecceeechH-HHH---HHHHHHHHhc---------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH
Confidence            44566777777766 533   3344555542         2346999999999999988886643 34799999999999


Q ss_pred             HHHHHHHHHCCCCCCceEEEEcCC
Q 016734          153 EWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.|++|++..+ +. +|.++.+|.
T Consensus       111 ~~A~~~l~~~~-~~-nv~~~~gdg  132 (209)
T PF01135_consen  111 ERARRNLARLG-ID-NVEVVVGDG  132 (209)
T ss_dssp             HHHHHHHHHHT-TH-SEEEEES-G
T ss_pred             HHHHHHHHHhc-cC-ceeEEEcch
Confidence            99999999987 44 699998874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.31  E-value=3.3e-06  Score=77.80  Aligned_cols=90  Identities=16%  Similarity=0.131  Sum_probs=68.0

Q ss_pred             CCcEEEecCC-CccCCCcC--HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           73 HGLNWWIPDG-QLCPTVPN--RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        73 fgl~~~vp~~-~LiPrvP~--r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      -|..+.+|++ .+=|+ .+  ||.+-.|+..-           .-...++||+-+|||++++-.+++. ..+++.||.|.
T Consensus        10 kgr~L~~p~~~~~RPT-~drVREalFNil~~~-----------~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~   76 (187)
T COG0742          10 KGRKLKTPDGPGTRPT-TDRVREALFNILAPD-----------EIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDR   76 (187)
T ss_pred             cCCcccCCCCCCcCCC-chHHHHHHHHhcccc-----------ccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCH
Confidence            4666777775 66677 55  35444444421           0245699999999999998877653 34899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .++...++|++..+ ++.+..++..|.
T Consensus        77 ~a~~~l~~N~~~l~-~~~~~~~~~~da  102 (187)
T COG0742          77 KAVKILKENLKALG-LEGEARVLRNDA  102 (187)
T ss_pred             HHHHHHHHHHHHhC-CccceEEEeecH
Confidence            99999999999987 778899888874

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=1.8e-06  Score=89.57  Aligned_cols=93  Identities=22%  Similarity=0.142  Sum_probs=71.1

Q ss_pred             hccCCcEEEecCCCccCCCcCH-HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNR-SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r-~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid  148 (384)
                      .+.-|++|.|+++.+-=.--.. +-+-..|.|.+..         +....++|++||||.|++.+++.  -.+|+|+|++
T Consensus       346 E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l---------~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~  414 (534)
T KOG2187|consen  346 ESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGL---------PADKTLLDVCCGTGTIGLALARG--VKRVIGVEIS  414 (534)
T ss_pred             eecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCC---------CCCcEEEEEeecCCceehhhhcc--ccceeeeecC
Confidence            4567899999999887652222 3334446666543         23468999999999999988854  3589999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          149 DVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ++|++-|++|++.|+ ++ +.+|+.+.
T Consensus       415 ~~aV~dA~~nA~~Ng-is-Na~Fi~gq  439 (534)
T KOG2187|consen  415 PDAVEDAEKNAQING-IS-NATFIVGQ  439 (534)
T ss_pred             hhhcchhhhcchhcC-cc-ceeeeecc
Confidence            999999999999998 66 47888773

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.30  E-value=2.1e-05  Score=78.68  Aligned_cols=142  Identities=17%  Similarity=0.184  Sum_probs=97.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEc-CCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV-DNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~-d~~~~~p~~~~~~~~~~~~  193 (384)
                      ++..+||-=||||.|.+..  .+-|++++|+|||.++++-|+.|++..+ +++ ..++.. |...               
T Consensus       197 ~G~~vlDPFcGTGgiLiEa--gl~G~~viG~Did~~mv~gak~Nl~~y~-i~~-~~~~~~~Da~~---------------  257 (347)
T COG1041         197 RGELVLDPFCGTGGILIEA--GLMGARVIGSDIDERMVRGAKINLEYYG-IED-YPVLKVLDATN---------------  257 (347)
T ss_pred             cCCEeecCcCCccHHHHhh--hhcCceEeecchHHHHHhhhhhhhhhhC-cCc-eeEEEeccccc---------------
Confidence            3458999999999985544  4679999999999999999999999887 554 444443 4321               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                             ..+  .+.+||.|+|-|||-.+.....              
T Consensus       258 ---------------------------------------lpl--~~~~vdaIatDPPYGrst~~~~--------------  282 (347)
T COG1041         258 ---------------------------------------LPL--RDNSVDAIATDPPYGRSTKIKG--------------  282 (347)
T ss_pred             ---------------------------------------CCC--CCCccceEEecCCCCccccccc--------------
Confidence                                                   001  2347999999999987643211              


Q ss_pred             cccCch-HHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEee-CCCeeEEE
Q 016734          274 VCSGGE-RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV-QGQTCRWG  339 (384)
Q Consensus       274 ~~~GGe-l~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~-qG~t~Rw~  339 (384)
                          ++ -..+.+.++.+...++.+||+.+-..     ..-...+.+.|++.+..+... +|.-+|-+
T Consensus       283 ----~~l~~Ly~~~le~~~evLk~gG~~vf~~p-----~~~~~~~~~~~f~v~~~~~~~~H~sLtR~i  341 (347)
T COG1041         283 ----EGLDELYEEALESASEVLKPGGRIVFAAP-----RDPRHELEELGFKVLGRFTMRVHGSLTRVI  341 (347)
T ss_pred             ----ccHHHHHHHHHHHHHHHhhcCcEEEEecC-----CcchhhHhhcCceEEEEEEEeecCceEEEE
Confidence                11 35788888888888999998754443     233445667888766665443 34345543

>TIGR03438 probable methyltransferase

Probab=98.26  E-value=3.1e-05  Score=76.24  Aligned_cols=61  Identities=16%  Similarity=0.093  Sum_probs=49.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||+|||+|.....|+...+ +.+++|+|+|++||+.|++++.... -.-+|.++.+|..
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~  125 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFT  125 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEccc
Confidence            45899999999999988888776 6899999999999999999987642 1235777888753

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.21  E-value=5.6e-06  Score=79.64  Aligned_cols=76  Identities=11%  Similarity=0.176  Sum_probs=63.2

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |+...++..+....            ...+||+|||++|.-++.+|...+ +.+++.+|++++..+.|++|++..+ +.+
T Consensus        65 ~~~g~lL~~l~~~~------------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~  131 (247)
T PLN02589         65 ADEGQFLNMLLKLI------------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAH  131 (247)
T ss_pred             HHHHHHHHHHHHHh------------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCC
Confidence            66766666665543            346899999999998888887654 6799999999999999999999998 889


Q ss_pred             ceEEEEcCCC
Q 016734          168 LIEIRKVDNS  177 (384)
Q Consensus       168 ~I~~~~~d~~  177 (384)
                      +|+++.++..
T Consensus       132 ~I~~~~G~a~  141 (247)
T PLN02589        132 KIDFREGPAL  141 (247)
T ss_pred             ceEEEeccHH
Confidence            9999999754

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.18  E-value=5.1e-06  Score=78.81  Aligned_cols=140  Identities=24%  Similarity=0.214  Sum_probs=96.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      +..+|||-|+|-|..++..+  ..++ .|+-+|.||..|++|..|=-..+..+..|+++.+|.-+               
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~--~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e---------------  196 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEAL--ERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE---------------  196 (287)
T ss_pred             cCCEeeeeccCccHHHHHHH--HcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH---------------
Confidence            46799999999998765544  3466 99999999999999999866555344568888887432               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                           +...+  .+++||+|+--||=|+-..               |+
T Consensus       197 -------------------------------------~V~~~--~D~sfDaIiHDPPRfS~Ag---------------eL  222 (287)
T COG2521         197 -------------------------------------VVKDF--DDESFDAIIHDPPRFSLAG---------------EL  222 (287)
T ss_pred             -------------------------------------HHhcC--CccccceEeeCCCccchhh---------------hH
Confidence                                                 11122  4788999999999886421               11


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCC-------CHHHHHHHHHHcCCeEEEEEEeeCC
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS-------NLKFLISKLRKVGVTIVKTTEFVQG  333 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~-------~l~~l~~~L~~~g~~~v~~~e~~qG  333 (384)
                      .    .+.|++.|    .++++++|-+.--+|...       -...+.+.|++.||..+...+-.-|
T Consensus       223 Y----seefY~El----~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~g  281 (287)
T COG2521         223 Y----SEEFYREL----YRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALG  281 (287)
T ss_pred             h----HHHHHHHH----HHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccc
Confidence            1    24566654    455666664444555333       2477889999999998887765444

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.16  E-value=4.6e-06  Score=77.07  Aligned_cols=147  Identities=17%  Similarity=0.245  Sum_probs=91.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||.|.+...|.. ..+.+.+|+|+|++.+..|.+    +|     +.++++|..+.                
T Consensus        14 gsrVLDLGCGdG~LL~~L~~-~k~v~g~GvEid~~~v~~cv~----rG-----v~Viq~Dld~g----------------   67 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLAYLKD-EKQVDGYGVEIDPDNVAACVA----RG-----VSVIQGDLDEG----------------   67 (193)
T ss_pred             CCEEEecCCCchHHHHHHHH-hcCCeEEEEecCHHHHHHHHH----cC-----CCEEECCHHHh----------------
Confidence            45899999999998766654 468999999999998776643    34     66888885420                


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                          +..+  ++++||+||++=    +.+. -.+|...    -.||+.
T Consensus        68 ------------------------------------L~~f--~d~sFD~VIlsq----tLQ~-~~~P~~v----L~EmlR  100 (193)
T PF07021_consen   68 ------------------------------------LADF--PDQSFDYVILSQ----TLQA-VRRPDEV----LEEMLR  100 (193)
T ss_pred             ------------------------------------HhhC--CCCCccEEehHh----HHHh-HhHHHHH----HHHHHH
Confidence                                                1112  478999999872    2222 1234332    235555


Q ss_pred             cCch-------HHHHHHHHHHHHHhh--------ccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeE
Q 016734          276 SGGE-------RAFITRIIEDSVALK--------QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCR  337 (384)
Q Consensus       276 ~GGe-------l~Fv~~ii~eS~~l~--------~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~R  337 (384)
                      .|.+       .++.+.-+.-  .+.        -+-.||-+=-=+..++.+...+.++.|+...+..-+-.++..+
T Consensus       101 Vgr~~IVsFPNFg~W~~R~~l--~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~~~~  175 (193)
T PF07021_consen  101 VGRRAIVSFPNFGHWRNRLQL--LLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGRRSR  175 (193)
T ss_pred             hcCeEEEEecChHHHHHHHHH--HhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCCCcc
Confidence            5544       2333321111  111        1346885433337789999999999999866666555554333

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.16  E-value=4.9e-06  Score=75.52  Aligned_cols=60  Identities=17%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC-CCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~-~l~~~I~~~~~d  175 (384)
                      ...+|||||||+|..++.++......+|+.+|.++ +++..+.|++.|+ ....++.+..-+
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~  105 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLD  105 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEE
Confidence            56799999999999998888765678999999999 9999999999985 123456665544

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.15  E-value=7.8e-06  Score=81.45  Aligned_cols=60  Identities=18%  Similarity=0.284  Sum_probs=51.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      +.+.|||+|||+|.++...|+.. ..+|+|||-+.-| +.|.+.+..|+ +++.|+++++.+-
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkvE  119 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKVE  119 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecceE
Confidence            45689999999999887666554 5589999999877 99999999998 9999999998753

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.14  E-value=3.9e-05  Score=73.74  Aligned_cols=61  Identities=16%  Similarity=0.144  Sum_probs=51.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC------CEEEEEeCcHHHHHHHHHHHHHCCCCCCc--eEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG------WSFVGSDMTDVALEWAEKNVKSNPHISEL--IEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~------~~v~gvDid~~al~~A~~Ni~~n~~l~~~--I~~~~~d~  176 (384)
                      ...++||+|||||-|+..+......      .+|+.+||++.+|+.+++-+++-+ +.+.  +.++.+|.
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dA  168 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDA  168 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCc
Confidence            4579999999999999888776554      799999999999999999998766 6544  88887763

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.08  E-value=6.6e-06  Score=77.28  Aligned_cols=57  Identities=18%  Similarity=0.166  Sum_probs=47.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ...+|.|||||.|.-..+|++++|++.++|+|-|++|++.|+.-      +. ..+|..+|+.+
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r------lp-~~~f~~aDl~~   86 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR------LP-DATFEEADLRT   86 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh------CC-CCceecccHhh
Confidence            46789999999999999999999999999999999999999543      22 36777777654

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.05  E-value=2.1e-05  Score=73.00  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=44.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .-.++||+|||.|.+...|+.+.  -+++++|+++.|++.|++.+...    .+|++++.++.
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp   99 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGL----PHVEWIQADVP   99 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TT
T ss_pred             ccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCC
Confidence            34689999999999999998775  38999999999999999988643    26999998753

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.03  E-value=2e-05  Score=81.99  Aligned_cols=61  Identities=13%  Similarity=0.053  Sum_probs=47.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhc----cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~----~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...|+|+|||+|.+....++..    ...+|+|||.++.|+...++.++.|+ ++++|+++++|..
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-w~~~V~vi~~d~r  251 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-WGDKVTVIHGDMR  251 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-TTTTEEEEES-TT
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-CCCeEEEEeCccc
Confidence            4689999999998875443322    24699999999999988888888897 9999999999864

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.03  E-value=1.2e-05  Score=81.68  Aligned_cols=59  Identities=19%  Similarity=0.168  Sum_probs=50.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+.||||..++.++.+.++ .+|+++|+|+.|++.+++|++.|+ +. .+.++++|.
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~~-~~~v~~~Da  104 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-VE-NIEVPNEDA  104 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-cEEEEchhH
Confidence            468999999999999999987654 489999999999999999999997 54 477777763

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.02  E-value=1.8e-05  Score=68.29  Aligned_cols=58  Identities=16%  Similarity=0.063  Sum_probs=51.5

Q ss_pred             eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .+||+|||.|.++..++...++++++++|.++.+++.+++|++.|+ +. ++.+++....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~~-~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-LP-NVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-CC-cEEEEEeeee
Confidence            3899999999999988888888899999999999999999999997 65 4888887654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PTZ00146 fibrillarin; Provisional

Probab=98.02  E-value=0.0004  Score=68.38  Aligned_cols=57  Identities=9%  Similarity=-0.077  Sum_probs=40.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.....++.... .-.|+|+|+++++++...+-++..    .+|.++.+|.
T Consensus       133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da  190 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDA  190 (293)
T ss_pred             CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCc
Confidence            45899999999999888887653 348999999998765444433221    1367777764

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.02  E-value=1.6e-05  Score=78.86  Aligned_cols=60  Identities=15%  Similarity=0.185  Sum_probs=49.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ....|||+|||||+++...++. -..+|+|||.++ +.++|++-++.|+ +.+||.++.+.+.
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N~-~~~rItVI~GKiE  236 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASNN-LADRITVIPGKIE  236 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcCC-ccceEEEccCccc
Confidence            4568999999999887555543 345899999985 6799999999996 9999999988753

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=3.3e-05  Score=74.73  Aligned_cols=57  Identities=11%  Similarity=0.064  Sum_probs=47.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ...||+||+|.|++...|+++  +.+|+|+|+|+..+...++...    ..++++++++|...
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk   87 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALK   87 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhc
Confidence            568999999999999888865  4579999999999998888765    23479999999653

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.99  E-value=2.1e-05  Score=75.01  Aligned_cols=49  Identities=16%  Similarity=0.262  Sum_probs=44.1

Q ss_pred             CCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734          114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      ..+..+|||||-+|.+.+.+|+.+-...++|+|||+..+..|++|++.-
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            3567899999999999999999887778999999999999999998743

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.93  E-value=3.3e-05  Score=72.80  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~  157 (384)
                      ...-|||||||||.-+..|.  .++...+|+|||+.||+.|.+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~--~~Gh~wiGvDiSpsML~~a~~   90 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLS--DSGHQWIGVDISPSMLEQAVE   90 (270)
T ss_pred             CCcEEEEeccCCCcchheec--cCCceEEeecCCHHHHHHHHH
Confidence            56789999999998776665  356789999999999999987

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.91  E-value=6.3e-05  Score=70.95  Aligned_cols=39  Identities=15%  Similarity=0.124  Sum_probs=34.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~  156 (384)
                      ..+|||+|||.|.-+..||.  .+++|+|+|+++.|++.|.
T Consensus        38 ~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~   76 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFF   76 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHH
Confidence            46999999999999888885  5899999999999999874

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.91  E-value=0.00011  Score=68.85  Aligned_cols=58  Identities=24%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             EEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          119 GFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       119 vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      |.||||-.|.+++.|.++..--+++|+||++..++.|++|++.++ +.++|+++.+|..
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL   58 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGL   58 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcc
Confidence            689999999999999987666689999999999999999999998 9999999999853

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.90  E-value=6.9e-05  Score=65.06  Aligned_cols=38  Identities=24%  Similarity=0.422  Sum_probs=32.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW  154 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~  154 (384)
                      ...+|||||||.|.+...++..  +.+++|+|+++.+++.
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK   59 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh
Confidence            4679999999999988877544  4599999999999988

...

>PLN02823 spermine synthase

Probab=97.87  E-value=0.0012  Score=66.44  Aligned_cols=96  Identities=13%  Similarity=0.053  Sum_probs=62.9

Q ss_pred             cCCcEEEecCCCc-cCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           72 DHGLNWWIPDGQL-CPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        72 ~fgl~~~vp~~~L-iPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      .||.-+.+..... +.  .....|-+.+........       ..+.+||.||+|.|.++..+.+..+..+++.||||++
T Consensus        68 ~~g~~L~lDg~~qs~~--~de~~YhE~l~h~~l~~~-------~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~  138 (336)
T PLN02823         68 PFGKVLIIDGKMQSAE--ADEFVYHESLVHPALLHH-------PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE  138 (336)
T ss_pred             CCceEEEECCcccccc--chHHHHHHHHHhHHHhhC-------CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH
Confidence            3565555543322 22  233456665554322211       2456899999999998876665444568999999999


Q ss_pred             HHHHHHHHHHHCC-CC-CCceEEEEcCC
Q 016734          151 ALEWAEKNVKSNP-HI-SELIEIRKVDN  176 (384)
Q Consensus       151 al~~A~~Ni~~n~-~l-~~~I~~~~~d~  176 (384)
                      .++.|++....++ .+ ..+++++.+|.
T Consensus       139 vv~lar~~~~~~~~~~~dprv~v~~~Da  166 (336)
T PLN02823        139 VVDFCRKHLTVNREAFCDKRLELIINDA  166 (336)
T ss_pred             HHHHHHHhcccccccccCCceEEEEChh
Confidence            9999999875432 01 35888888874

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.87  E-value=8.9e-05  Score=68.77  Aligned_cols=58  Identities=14%  Similarity=0.178  Sum_probs=50.3

Q ss_pred             eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .+||||||.|-..+.+|...|+..++|+|+....+..|...+...+ +. ++.++.+|..
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l~-Nv~~~~~da~   77 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-LK-NVRFLRGDAR   77 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-TS-SEEEEES-CT
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-cc-ceEEEEccHH
Confidence            8999999999999999999999999999999999999999998886 64 6999998753

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.86  E-value=0.00013  Score=76.67  Aligned_cols=59  Identities=19%  Similarity=0.172  Sum_probs=44.4

Q ss_pred             CeEEEECCcccHHHHHHHhhcc----CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLL----GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~----~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+|+|.+||||.+....+....    ...++|.|+++..++.|+.|.--++ +...+.+.++|.
T Consensus       188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg-i~~~~~i~~~dt  250 (489)
T COG0286         188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG-IEGDANIRHGDT  250 (489)
T ss_pred             CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC-CCcccccccccc
Confidence            4899999999987655444321    3679999999999999999999887 543345555553

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.83  E-value=0.00089  Score=61.74  Aligned_cols=150  Identities=17%  Similarity=0.137  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (384)
Q Consensus        91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~  170 (384)
                      .+.+..++.|-+....  ..  .....+++|||||.|.=++.||-.+|..+|+.+|-...=+..-+.-+...+ |+ +++
T Consensus        28 ~~~~~~Hi~DSL~~~~--~~--~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L~-nv~  101 (184)
T PF02527_consen   28 EEIWERHILDSLALLP--FL--PDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-LS-NVE  101 (184)
T ss_dssp             HHHHHHHHHHHHGGGG--CS---CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--S-SEE
T ss_pred             HHHHHHHHHHHHHhhh--hh--ccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-CC-CEE
Confidence            3455567777665421  11  112227999999999988888888999999999999999999998888887 76 589


Q ss_pred             EEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCC
Q 016734          171 IRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP  250 (384)
Q Consensus       171 ~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPP  250 (384)
                      ++++...+                                                         ....++||+|+|=  
T Consensus       102 v~~~R~E~---------------------------------------------------------~~~~~~fd~v~aR--  122 (184)
T PF02527_consen  102 VINGRAEE---------------------------------------------------------PEYRESFDVVTAR--  122 (184)
T ss_dssp             EEES-HHH---------------------------------------------------------TTTTT-EEEEEEE--
T ss_pred             EEEeeecc---------------------------------------------------------cccCCCccEEEee--
Confidence            88775210                                                         0125789988763  


Q ss_pred             cccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCC--CHHHHHHHHHHcCCeEEEEE
Q 016734          251 FFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS--NLKFLISKLRKVGVTIVKTT  328 (384)
Q Consensus       251 y~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~--~l~~l~~~L~~~g~~~v~~~  328 (384)
                                    ++              +-+..+++-+..+.+.+|.+.++-|+..  .+++....++..+.....+.
T Consensus       123 --------------Av--------------~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~  174 (184)
T PF02527_consen  123 --------------AV--------------APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVP  174 (184)
T ss_dssp             --------------SS--------------SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred             --------------hh--------------cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeec
Confidence                          11              1144556667778888888889999532  24555666777888777777


Q ss_pred             EeeCC
Q 016734          329 EFVQG  333 (384)
Q Consensus       329 e~~qG  333 (384)
                      ++...
T Consensus       175 ~~~~~  179 (184)
T PF02527_consen  175 EFELP  179 (184)
T ss_dssp             EEE-T
T ss_pred             cccCC
Confidence            77544

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.82  E-value=0.00011  Score=70.97  Aligned_cols=72  Identities=17%  Similarity=0.124  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      .++++.|.+.+..         .....|||||.|.|.+...|+...  .+++++|+|+..++..++....+    +++++
T Consensus        16 ~~~~~~Iv~~~~~---------~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~----~~~~v   80 (262)
T PF00398_consen   16 PNIADKIVDALDL---------SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASN----PNVEV   80 (262)
T ss_dssp             HHHHHHHHHHHTC---------GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTC----SSEEE
T ss_pred             HHHHHHHHHhcCC---------CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhc----cccee
Confidence            3566677776643         245689999999999999998665  79999999999999988876533    47999


Q ss_pred             EEcCCCC
Q 016734          172 RKVDNSE  178 (384)
Q Consensus       172 ~~~d~~~  178 (384)
                      +++|..+
T Consensus        81 i~~D~l~   87 (262)
T PF00398_consen   81 INGDFLK   87 (262)
T ss_dssp             EES-TTT
T ss_pred             eecchhc
Confidence            9998653

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK04148 hypothetical protein; Provisional

Probab=97.80  E-value=7.1e-05  Score=65.61  Aligned_cols=52  Identities=21%  Similarity=0.188  Sum_probs=40.8

Q ss_pred             CCCeEEEECCcccH-HHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~-I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      +..++||||||+|. ++..|++  .+..|+|+|+++.+++.|+++    +     +.++.+|..
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~----~-----~~~v~dDlf   68 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKL----G-----LNAFVDDLF   68 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHh----C-----CeEEECcCC
Confidence            34689999999995 7777763  478999999999998887665    2     567777754

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.77  E-value=8.3e-05  Score=69.91  Aligned_cols=61  Identities=20%  Similarity=0.117  Sum_probs=44.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC----------CCCCceEEEEcCCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP----------HISELIEIRKVDNSE  178 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~----------~l~~~I~~~~~d~~~  178 (384)
                      ..+|||+|||.|.-+..||.  .|++|+|+|+|+.|++.|........          .-..+|+++.+|..+
T Consensus        35 ~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~  105 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA  105 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence            45999999999999888885  48999999999999998633111000          002358888888653

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.74  E-value=0.00011  Score=71.26  Aligned_cols=60  Identities=18%  Similarity=0.177  Sum_probs=50.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ....||++|-|+|.+...|..  .+.+|+|+|+|+.++..-.+-++... .+.+.+++++|..
T Consensus        58 ~tD~VLEvGPGTGnLT~~lLe--~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~l  117 (315)
T KOG0820|consen   58 PTDVVLEVGPGTGNLTVKLLE--AGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFL  117 (315)
T ss_pred             CCCEEEEeCCCCCHHHHHHHH--hcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEecccc
Confidence            456899999999999877764  46799999999999999999888776 6788999999854

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.001  Score=64.58  Aligned_cols=100  Identities=16%  Similarity=0.172  Sum_probs=75.6

Q ss_pred             HhhccCCcEEEecCC----CccCCCcCHHHH-------------HHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHH
Q 016734           68 LLLHDHGLNWWIPDG----QLCPTVPNRSNY-------------IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY  130 (384)
Q Consensus        68 lL~~~fgl~~~vp~~----~LiPrvP~r~~y-------------i~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~  130 (384)
                      |.=.+||-.+....|    +|-|+ |+-+..             |..|...|..         ....+||+-|||||.++
T Consensus        51 iIGK~~G~~v~sskG~~vylL~PT-pELWTl~LphRTQI~Yt~Dia~I~~~L~i---------~PGsvV~EsGTGSGSlS  120 (314)
T KOG2915|consen   51 IIGKPYGSKVASSKGKFVYLLQPT-PELWTLALPHRTQILYTPDIAMILSMLEI---------RPGSVVLESGTGSGSLS  120 (314)
T ss_pred             eecCCccceeeecCCcEEEEecCC-hHHhhhhccCcceEEecccHHHHHHHhcC---------CCCCEEEecCCCcchHH
Confidence            345578888888888    56677 643221             2233333332         13458999999999999


Q ss_pred             HHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          131 PLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       131 ~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      .+++... |--+++-.|+...-.+.|.+-.+..+ +.+.+++.+.|+..
T Consensus       121 haiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~  168 (314)
T KOG2915|consen  121 HAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCG  168 (314)
T ss_pred             HHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeeccc
Confidence            9888764 55689999999999999999999998 99999999999764

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.65  E-value=0.0012  Score=62.39  Aligned_cols=120  Identities=20%  Similarity=0.170  Sum_probs=91.5

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccccc
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~  196 (384)
                      ..+.||||-.+.++..|.+..+...++++|+++-.++.|.+|+++++ +.++|+++.+|...                  
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~------------------   78 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLA------------------   78 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCcc------------------
Confidence            34999999999999999888888899999999999999999999998 99999999988542                  


Q ss_pred             ccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccccc
Q 016734          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (384)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~  276 (384)
                                                           . +..++.+|+|+--          +.                
T Consensus        79 -------------------------------------~-l~~~d~~d~ivIA----------GM----------------   94 (226)
T COG2384          79 -------------------------------------V-LELEDEIDVIVIA----------GM----------------   94 (226)
T ss_pred             -------------------------------------c-cCccCCcCEEEEe----------CC----------------
Confidence                                                 0 1123345544321          10                


Q ss_pred             CchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCe
Q 016734          277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT  323 (384)
Q Consensus       277 GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~  323 (384)
                        +=..+..|+++-...++..  .-..+---.+...|.+.|.+.++.
T Consensus        95 --GG~lI~~ILee~~~~l~~~--~rlILQPn~~~~~LR~~L~~~~~~  137 (226)
T COG2384          95 --GGTLIREILEEGKEKLKGV--ERLILQPNIHTYELREWLSANSYE  137 (226)
T ss_pred             --cHHHHHHHHHHhhhhhcCc--ceEEECCCCCHHHHHHHHHhCCce
Confidence              1235788888887766655  234555578899999999999985

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.63  E-value=0.00019  Score=70.85  Aligned_cols=59  Identities=14%  Similarity=-0.054  Sum_probs=50.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ...+||.+||.|.-+..++...+ +.+|+|+|+|++|++.|++.+..    .+++.+++++..+
T Consensus        20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f~~   79 (296)
T PRK00050         20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNFSN   79 (296)
T ss_pred             CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCHHH
Confidence            45899999999999999988875 67999999999999999988754    2579999988653

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.45  E-value=0.00038  Score=69.86  Aligned_cols=60  Identities=15%  Similarity=0.083  Sum_probs=52.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      +..|+|+=+|-|.+++.+|.... .+|+|+||+|+|+++.++|++.|+ ++++|..+++|..
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~r  248 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAR  248 (341)
T ss_pred             CCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHH
Confidence            56899999999999988876533 349999999999999999999998 8999999999864

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.44  E-value=0.00017  Score=71.18  Aligned_cols=42  Identities=17%  Similarity=0.027  Sum_probs=31.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~  157 (384)
                      +..+|||||||+|.....++.+.+ ..|+|+|-++..+...+.
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~  156 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEA  156 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHH
Confidence            567999999999988767665432 379999998877665443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.39  E-value=0.0015  Score=61.28  Aligned_cols=60  Identities=17%  Similarity=0.109  Sum_probs=45.1

Q ss_pred             CCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE-EEEcCC
Q 016734          114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE-IRKVDN  176 (384)
Q Consensus       114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~-~~~~d~  176 (384)
                      ..++.+|++|||+|.-...+- -.|+.+|+++|-++.+-+.|.+.++.+..  .++. ++.++.
T Consensus        75 ~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~g  135 (252)
T KOG4300|consen   75 SGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVADG  135 (252)
T ss_pred             cCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeech
Confidence            356678999999998643321 12678999999999999999999998853  2355 777763

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.36  E-value=0.00082  Score=58.81  Aligned_cols=49  Identities=18%  Similarity=0.222  Sum_probs=42.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhh----ccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~----~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      ....|+|+|||-|.++..|+..    .++.+|+|+|.++..++.|.+..+..+
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            5678999999999999999872    278999999999999999998887654

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.30  E-value=0.0032  Score=59.83  Aligned_cols=101  Identities=15%  Similarity=0.153  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHhhccCCcE--EEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHH
Q 016734           56 TDFNATRELTRVLLLHDHGLN--WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLL  133 (384)
Q Consensus        56 ~~~~av~~Lt~alL~~~fgl~--~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~L  133 (384)
                      ..++.+++|.++.+.+. +..  +.++        |+-..++.-+..++            .+.++||||+=+|.=+++.
T Consensus        33 ~e~~~l~el~e~t~~~~-~~~~~m~v~--------~d~g~fl~~li~~~------------~ak~~lelGvfTGySaL~~   91 (237)
T KOG1663|consen   33 REPELLKELREATLTYP-QPGSEMLVG--------PDKGQFLQMLIRLL------------NAKRTLELGVFTGYSALAV   91 (237)
T ss_pred             CCcHHHHHHHHHHhhcC-CcccceecC--------hHHHHHHHHHHHHh------------CCceEEEEecccCHHHHHH
Confidence            45788899999887654 322  2222        45555555555554            3468999998777665566


Q ss_pred             Hhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          134 GASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       134 a~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      |...| +-+++++|||+++++.+.+-++..+ ..++|++++++..+
T Consensus        92 Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~e  136 (237)
T KOG1663|consen   92 ALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALE  136 (237)
T ss_pred             HHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhh
Confidence            66666 5699999999999999999999998 88999999997543

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.29  E-value=0.00033  Score=66.92  Aligned_cols=58  Identities=21%  Similarity=0.444  Sum_probs=41.6

Q ss_pred             CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus        86 PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N  158 (384)
                      |.-|     ..|+.++....        .....++|+|||+|.-+..++.. +. +|+|+|+++++|+.|++.
T Consensus        17 P~YP-----tdw~~~ia~~~--------~~h~~a~DvG~G~Gqa~~~iae~-~k-~VIatD~s~~mL~~a~k~   74 (261)
T KOG3010|consen   17 PSYP-----TDWFKKIASRT--------EGHRLAWDVGTGNGQAARGIAEH-YK-EVIATDVSEAMLKVAKKH   74 (261)
T ss_pred             CCCc-----HHHHHHHHhhC--------CCcceEEEeccCCCcchHHHHHh-hh-hheeecCCHHHHHHhhcC
Confidence            5556     56777766542        12338999999999655555544 43 799999999999988653

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.29  E-value=0.00079  Score=64.08  Aligned_cols=58  Identities=16%  Similarity=0.118  Sum_probs=52.9

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+||||||.|-..+.+|.+.|.+.++|+|+....+..|..-+.+.+ +. +|.++..|.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l~-Nlri~~~DA  107 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-LK-NLRLLCGDA  107 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-CC-cEEEEcCCH
Confidence            47999999999999999999999999999999999999999999887 65 688888874

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.23  E-value=0.00018  Score=67.80  Aligned_cols=60  Identities=15%  Similarity=0.044  Sum_probs=50.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ...|+|.-||.|.-.+..+.+  +..|+++||||.-+.+|++|++--| +.+||+|+++|.++
T Consensus        95 ~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld  154 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLD  154 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHHH
Confidence            346888888888776677755  4589999999999999999999999 88999999999653

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.23  E-value=0.0024  Score=64.12  Aligned_cols=43  Identities=16%  Similarity=0.182  Sum_probs=29.8

Q ss_pred             CCCeEEEECCcccH-HHHHHHhhccCCEEEEEeCcHHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       115 ~~~~vLDIGtGsG~-I~~~La~~~~~~~v~gvDid~~al~~A~~Ni  159 (384)
                      ...+|||||||-|. +.-...  ..-..++|+||+.++++.|++-.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry  105 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQK--AKIKHYVGIDISEESIEEARERY  105 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHH
T ss_pred             CCCeEEEecCCCchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHH
Confidence            56799999999776 332222  22348999999999999999877

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK10742 putative methyltransferase; Provisional

Probab=97.19  E-value=0.0016  Score=62.66  Aligned_cols=58  Identities=10%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC------CC-CCCceEEEEcCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN------PH-ISELIEIRKVDN  176 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n------~~-l~~~I~~~~~d~  176 (384)
                      .+|||+-+|+|..+..++.+  +++|+++|.++.+....+.|+++.      +. +..+++++++|.
T Consensus        90 p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             CEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            38999999999999998865  778999999999999999999873      11 224688887763

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.17  E-value=0.0033  Score=65.92  Aligned_cols=145  Identities=14%  Similarity=0.104  Sum_probs=94.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|+|.|.=...+|..+.+ -.++|.|+++.-++..++|+++.+ +. .|.+...|...               
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-~~-nv~v~~~D~~~---------------  175 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-VS-NVALTHFDGRV---------------  175 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCchhh---------------
Confidence            4468999999999999899887643 489999999999999999999998 54 47776665321               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                            +...  ..+.||.|++-+|=--..-- ..+|.....-+...+
T Consensus       176 --------------------------------------~~~~--~~~~fD~ILvDaPCSG~G~~-rk~p~~~~~~s~~~v  214 (470)
T PRK11933        176 --------------------------------------FGAA--LPETFDAILLDAPCSGEGTV-RKDPDALKNWSPESN  214 (470)
T ss_pred             --------------------------------------hhhh--chhhcCeEEEcCCCCCCccc-ccCHHHhhhCCHHHH
Confidence                                                  0000  13569999999985432211 112322111011000


Q ss_pred             cccCch-HHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734          274 VCSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       274 ~~~GGe-l~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g  321 (384)
                          -+ ...=.+|++.+..+++.+|.+   ||-+...++-.-+...|++++
T Consensus       215 ----~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~  262 (470)
T PRK11933        215 ----LEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP  262 (470)
T ss_pred             ----HHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence                01 233456888888888888865   455665556666666777764

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.09  E-value=0.00087  Score=62.29  Aligned_cols=57  Identities=16%  Similarity=0.148  Sum_probs=45.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      +.++|||+|+|||..+++.+.. -...|+++|++|......+.|++.|+ .  .|.+...|
T Consensus        79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~ang-v--~i~~~~~d  135 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANG-V--SILFTHAD  135 (218)
T ss_pred             ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhcc-c--eeEEeecc
Confidence            5679999999999887655432 23478999999999999999999998 3  37777665

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.05  E-value=0.002  Score=61.95  Aligned_cols=118  Identities=20%  Similarity=0.188  Sum_probs=73.4

Q ss_pred             CCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHHHHHHHHHHhc
Q 016734           24 ENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLS  103 (384)
Q Consensus        24 ~~~~df~~La~~~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~  103 (384)
                      ..+||.++|.++.   .+          ..+..|+++++...+.+|......             -||+..++.+.+.+-
T Consensus        47 ~~~p~~~~ll~~l---~~----------a~~~~D~e~~~~~~r~lL~~HaST-------------~ERl~~Ld~fY~~if  100 (251)
T PF07091_consen   47 EGRPDYDALLRKL---QE----------ALDVGDPEAIRAWCRRLLAGHAST-------------RERLPNLDEFYDEIF  100 (251)
T ss_dssp             SS---HHHHHHHH---HH----------HHCTTHHHHHHHHHHHHHHTSHHH-------------HCCGGGHHHHHHHHC
T ss_pred             cCCCCHHHHHHHH---Hh----------ccCcCCHHHHHHHHHHHHhhccch-------------hhhhhhHHHHHHHHH
Confidence            4577777777662   22          366789999988888777443221             233333444444332


Q ss_pred             cCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          104 SNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       104 ~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .. +      ..+.+|+|||||-.-+++-.....++..++|+|||..+++.-..-+...+ ..  .++...|..
T Consensus       101 ~~-~------~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~--~~~~v~Dl~  164 (251)
T PF07091_consen  101 GR-I------PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VP--HDARVRDLL  164 (251)
T ss_dssp             CC-S---------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--C--EEEEEE-TT
T ss_pred             hc-C------CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CC--cceeEeeee
Confidence            21 1      23569999999999887766656678899999999999999988887775 43  555556654

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.03  E-value=0.0016  Score=61.40  Aligned_cols=47  Identities=26%  Similarity=0.286  Sum_probs=37.2

Q ss_pred             CCCCeEEEECCcccHHHHHHHhhccC--CEEEEEeCcHHHHHHHHHHHH
Q 016734          114 GDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVK  160 (384)
Q Consensus       114 ~~~~~vLDIGtGsG~I~~~La~~~~~--~~v~gvDid~~al~~A~~Ni~  160 (384)
                      ..+..+-|-|||+|.+...|+.-..+  ..|+|.|||++++++|++|+.
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            46789999999999998888765443  479999999999999999985

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=96.99  E-value=0.001  Score=61.60  Aligned_cols=58  Identities=14%  Similarity=0.075  Sum_probs=48.0

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ..+.|+|+|||.++...+..  .-+|+|+|.||.-.++|.+|+.-++ + +.++++.+|..+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g-~-~n~evv~gDA~~   91 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG-D-VNWEVVVGDARD   91 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC-C-cceEEEeccccc
Confidence            57999999999887655533  4589999999999999999998776 4 469999999764

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.98  E-value=0.0037  Score=59.48  Aligned_cols=40  Identities=10%  Similarity=-0.012  Sum_probs=35.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~  157 (384)
                      ..+||+.|||.|.-...||.  .|++|+|+|+|+.|++.+.+
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~   83 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFS   83 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHH
Confidence            46999999999998888875  47789999999999999855

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=96.95  E-value=0.0035  Score=59.21  Aligned_cols=40  Identities=25%  Similarity=0.244  Sum_probs=34.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~  156 (384)
                      ...+||..|||.|.-...||.+  |.+|+|+|+++.|++.|.
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~   76 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAF   76 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHH
T ss_pred             CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHH
Confidence            3468999999999998888864  789999999999999983

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.95  E-value=0.019  Score=55.10  Aligned_cols=62  Identities=16%  Similarity=-0.014  Sum_probs=45.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC--CCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--HISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~--~l~~~I~~~~~d~  176 (384)
                      ++.+||=||-|.|.+.-.+.+..+..+++.||||+..++.|++-.....  .-..|++++.+|.
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg  139 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG  139 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence            4679999999999887777644445699999999999999998765321  1235899988873

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.92  E-value=0.017  Score=54.57  Aligned_cols=78  Identities=15%  Similarity=0.051  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCC-CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCce
Q 016734           91 RSNYIHWIEDLLSSNIIPTTSRNGD-KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELI  169 (384)
Q Consensus        91 r~~yi~~i~dll~~~~~~~~~~~~~-~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I  169 (384)
                      -+.|.+++.|.+.....     ... ..+++|||+|+|.=++-||-.+|+.+|+-+|-...-+..-+.-++..+ |+ ++
T Consensus        47 ~e~~~rHilDSl~~~~~-----~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-L~-nv  119 (215)
T COG0357          47 EELWQRHILDSLVLLPY-----LDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-LE-NV  119 (215)
T ss_pred             HHHHHHHHHHHhhhhhc-----ccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-CC-Ce
Confidence            46788888887764321     112 579999999999888888878899999999999999888888888887 65 48


Q ss_pred             EEEEcC
Q 016734          170 EIRKVD  175 (384)
Q Consensus       170 ~~~~~d  175 (384)
                      +++++.
T Consensus       120 ~i~~~R  125 (215)
T COG0357         120 EIVHGR  125 (215)
T ss_pred             EEehhh
Confidence            888765

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.89  E-value=0.024  Score=54.43  Aligned_cols=60  Identities=13%  Similarity=0.145  Sum_probs=40.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      .+.+||=+|=+ =.+++++|......+|+-+|||+..++.-++.+++.+ +.  |+.++.|..+
T Consensus        44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g-l~--i~~~~~DlR~  103 (243)
T PF01861_consen   44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG-LP--IEAVHYDLRD  103 (243)
T ss_dssp             TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS
T ss_pred             cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-Cc--eEEEEecccc
Confidence            45689999855 4577777776677899999999999999999999998 65  9999998754

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.81  E-value=0.032  Score=56.48  Aligned_cols=148  Identities=16%  Similarity=0.164  Sum_probs=99.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC--CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSV  192 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~--~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~  192 (384)
                      ...+|||+|++.|.=...+++...+  ..|+|+|+|+.-++..++|+++.| +.+ +.++..|...              
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~~n-v~~~~~d~~~--------------  219 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-VRN-VIVVNKDARR--------------  219 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-CCc-eEEEeccccc--------------
Confidence            4579999999999887788877654  678999999999999999999998 665 6666665321              


Q ss_pred             ccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccc
Q 016734          193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE  272 (384)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E  272 (384)
                                                             +.......++||-|++-||=-.+... ..+|..-..-+...
T Consensus       220 ---------------------------------------~~~~~~~~~~fD~iLlDaPCSg~G~i-rr~Pd~~~~~~~~~  259 (355)
T COG0144         220 ---------------------------------------LAELLPGGEKFDRILLDAPCSGTGVI-RRDPDVKWRRTPED  259 (355)
T ss_pred             ---------------------------------------ccccccccCcCcEEEECCCCCCCccc-ccCccccccCCHHH
Confidence                                                   00000123469999999997654332 22444322211111


Q ss_pred             ccccCchHHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734          273 MVCSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g  321 (384)
                      +   ..-..+=.+|++.+..+++.+|.+   ||-+-..++-+-+...|++..
T Consensus       260 i---~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~  308 (355)
T COG0144         260 I---AELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP  308 (355)
T ss_pred             H---HHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence            0   001344556888888888887754   466666777787888888763

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.72  E-value=0.0045  Score=58.49  Aligned_cols=55  Identities=16%  Similarity=0.119  Sum_probs=45.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ...+|+|||.|+|.++..++.++|+++++..|. |..++.|++        .+||+++.+|..+
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~  154 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD  154 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHHh
Confidence            345899999999999999999999999999999 888888888        3589999999764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.65  E-value=0.0039  Score=61.38  Aligned_cols=45  Identities=20%  Similarity=0.305  Sum_probs=34.8

Q ss_pred             CCCeEEEECCccc----HHHHHHHhhcc----CCEEEEEeCcHHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGAN----CIYPLLGASLL----GWSFVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       115 ~~~~vLDIGtGsG----~I~~~La~~~~----~~~v~gvDid~~al~~A~~Ni  159 (384)
                      ...+|...||.||    .|+.+|....+    .++|+|+|||+.+++.|++-+
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~  167 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI  167 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence            3589999999999    34444544322    478999999999999998864

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.63  E-value=0.054  Score=50.83  Aligned_cols=46  Identities=13%  Similarity=0.078  Sum_probs=41.4

Q ss_pred             eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      +||+||+|||-=+..+|..+|..+..-+|+++..+..-+.-+...+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~   73 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG   73 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC
Confidence            6999999999999999999999999999999999877777777665

The function of this family is unknown.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.63  E-value=0.0036  Score=64.39  Aligned_cols=60  Identities=22%  Similarity=0.190  Sum_probs=50.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ..+..+||||||+|.++.+.+... .-.|+|+|+=.-|.++|++...+|+ .+++|+++...
T Consensus        65 ~gkv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkr  124 (636)
T KOG1501|consen   65 IGKVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKR  124 (636)
T ss_pred             CceEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCC-Cccceeeeccc
Confidence            456789999999998876555444 4479999999999999999999998 99999998654

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.45  E-value=0.0052  Score=58.53  Aligned_cols=39  Identities=13%  Similarity=0.001  Sum_probs=32.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW  154 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~  154 (384)
                      ....+||+|||+|.+...++.. ...+|+|+|+++.++..
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            4558999999999998888764 34589999999988765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.45  E-value=0.0014  Score=62.35  Aligned_cols=41  Identities=20%  Similarity=0.222  Sum_probs=33.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N  158 (384)
                      -.++||+|||+|..+..|-..  -.+.+|+|||+.|++.|.+.
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK  166 (287)
T ss_pred             cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc
Confidence            568999999999988777533  24789999999999998663

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.41  E-value=0.026  Score=55.60  Aligned_cols=64  Identities=14%  Similarity=0.111  Sum_probs=54.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHhhccC--CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          114 GDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       114 ~~~~~vLDIGtGsG~I~~~La~~~~~--~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      +.+++||||.||.|-.-+-.....+.  .++...|.++.+++..++-++.++ |++.++|.++|..+
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~dAfd  199 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQGDAFD  199 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEecCCCC
Confidence            57899999999999765444455564  689999999999999999999998 99888999999654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.005  Score=55.09  Aligned_cols=84  Identities=18%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734           83 QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus        83 ~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      .-+|-||-|...++.+..++..         +.+++.+|||+|-|-|-+..+... -..-+|+|+++..+.+++-.+-+.
T Consensus        49 ~cvPYVpAtteQv~nVLSll~~---------n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~  118 (199)
T KOG4058|consen   49 LCVPYVPATTEQVENVLSLLRG---------NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRA  118 (199)
T ss_pred             ecccccCccHHHHHHHHHHccC---------CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHH
Confidence            4457799999999999888754         345789999999999855444332 246799999999999999999998


Q ss_pred             CCCCCceEEEEcCCC
Q 016734          163 PHISELIEIRKVDNS  177 (384)
Q Consensus       163 ~~l~~~I~~~~~d~~  177 (384)
                      + +..+..|+.-|.-
T Consensus       119 g-~~k~trf~Rkdlw  132 (199)
T KOG4058|consen  119 G-CAKSTRFRRKDLW  132 (199)
T ss_pred             h-cccchhhhhhhhh
Confidence            8 8888888877754

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.40  E-value=0.05  Score=48.15  Aligned_cols=115  Identities=10%  Similarity=0.081  Sum_probs=68.0

Q ss_pred             EEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCc
Q 016734          141 SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPA  220 (384)
Q Consensus       141 ~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  220 (384)
                      +|+|+||+++|++.+++.++..+ +.+++++++..-.                                           
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe-------------------------------------------   36 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHE-------------------------------------------   36 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GG-------------------------------------------
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHH-------------------------------------------
Confidence            68999999999999999999998 8889999986521                                           


Q ss_pred             CCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEE
Q 016734          221 GAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY  300 (384)
Q Consensus       221 ~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~  300 (384)
                               .+ ...+ ..+.+|++|-|==|.|..+              .++.|.   -.-...-++.+..+++.+|..
T Consensus        37 ---------~l-~~~i-~~~~v~~~iFNLGYLPggD--------------k~i~T~---~~TTl~Al~~al~lL~~gG~i   88 (140)
T PF06962_consen   37 ---------NL-DEYI-PEGPVDAAIFNLGYLPGGD--------------KSITTK---PETTLKALEAALELLKPGGII   88 (140)
T ss_dssp             ---------GG-GGT---S--EEEEEEEESB-CTS---------------TTSB-----HHHHHHHHHHHHHHEEEEEEE
T ss_pred             ---------HH-HhhC-ccCCcCEEEEECCcCCCCC--------------CCCCcC---cHHHHHHHHHHHHhhccCCEE
Confidence                     01 1112 1258999999988877533              222222   111223346777888999998


Q ss_pred             EEEecC--C---CCHHHHHHHHHHcCCeEEEE
Q 016734          301 TSMVGR--K---SNLKFLISKLRKVGVTIVKT  327 (384)
Q Consensus       301 t~~vgk--~---~~l~~l~~~L~~~g~~~v~~  327 (384)
                      +.++-.  .   .-.+.+.+.+++..-+.+.+
T Consensus        89 ~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V  120 (140)
T PF06962_consen   89 TIVVYPGHPGGKEESEAVEEFLASLDQKEFNV  120 (140)
T ss_dssp             EEEE--STCHHHHHHHHHHHHHHTS-TTTEEE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhCCcceEEE
Confidence            776642  1   12355666666655433333

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.36  E-value=0.011  Score=62.66  Aligned_cols=59  Identities=12%  Similarity=0.010  Sum_probs=51.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ....+||||||.|-....+|...|+..++|+|+....+..|...+...+ +. ++.++..+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l~-N~~~~~~~  405 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-IT-NFLLFPNN  405 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-CC-eEEEEcCC
Confidence            3568999999999999999999999999999999999999988888776 65 47776654

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.36  E-value=0.0027  Score=63.51  Aligned_cols=58  Identities=19%  Similarity=0.270  Sum_probs=38.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHH-------HHHHHHHHCCCCCCceEEEEcC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE-------WAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~-------~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      +..|.|-=.|+|.+  ++++...|+-|+|+|||-.++.       ..+.|.+.-+..+.-+.++.+|
T Consensus       209 GdivyDPFVGTGsl--Lvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D  273 (421)
T KOG2671|consen  209 GDIVYDPFVGTGSL--LVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD  273 (421)
T ss_pred             CCEEecCccccCce--eeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence            45799988888876  4555578999999999998887       2344555555222224444444

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.20  E-value=0.0081  Score=57.59  Aligned_cols=56  Identities=20%  Similarity=0.261  Sum_probs=41.6

Q ss_pred             CeEEEECCcccHH-HHHHHhhccC--CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          117 VKGFDIGTGANCI-YPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       117 ~~vLDIGtGsG~I-~~~La~~~~~--~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+||+||||.|-. .++| +..++  ..++|+|.+|.|++..++|...+.   +++.....|.
T Consensus        73 ~~ilEvGCGvGNtvfPll-~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dl  131 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLL-KTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDL  131 (264)
T ss_pred             hhheeeccCCCcccchhh-hcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceec
Confidence            3899999999974 4444 44444  899999999999999999987663   3455444443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.19  E-value=0.095  Score=46.71  Aligned_cols=35  Identities=20%  Similarity=0.140  Sum_probs=25.6

Q ss_pred             EEEeCcHHHHHHHHHHHHHCC-CCCCceEEEEcCCC
Q 016734          143 VGSDMTDVALEWAEKNVKSNP-HISELIEIRKVDNS  177 (384)
Q Consensus       143 ~gvDid~~al~~A~~Ni~~n~-~l~~~I~~~~~d~~  177 (384)
                      +|+|+|+.|++.|++..+..+ ....+|+++++|..
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~   36 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAI   36 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechh
Confidence            589999999999987765322 02346999998743

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.76  E-value=0.048  Score=53.63  Aligned_cols=97  Identities=13%  Similarity=0.033  Sum_probs=63.7

Q ss_pred             cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      .||.-+-+...++.=- -+--.|.+++.-.-...       ...+.+||=||-|.|...-.+.+..+-.+++.||||+..
T Consensus        41 ~~g~~l~ldg~~q~~e-~de~~yhEml~h~~~~a-------h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~V  112 (282)
T COG0421          41 DFGKVLVLDGVVQLTE-RDEFIYHEMLAHVPLLA-------HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAV  112 (282)
T ss_pred             ccceEEEecChhhhcc-chhHHHHHHHHhchhhh-------CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHH
Confidence            4555555555555422 12224555554332221       123469999999999998888776667799999999999


Q ss_pred             HHHHHHHHHHCC--CCCCceEEEEcCC
Q 016734          152 LEWAEKNVKSNP--HISELIEIRKVDN  176 (384)
Q Consensus       152 l~~A~~Ni~~n~--~l~~~I~~~~~d~  176 (384)
                      +++|++=.....  ....|++++.+|.
T Consensus       113 i~~ar~~l~~~~~~~~dpRv~i~i~Dg  139 (282)
T COG0421         113 IELARKYLPEPSGGADDPRVEIIIDDG  139 (282)
T ss_pred             HHHHHHhccCcccccCCCceEEEeccH
Confidence            999998764321  1236888888774

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=95.51  E-value=0.057  Score=53.93  Aligned_cols=147  Identities=15%  Similarity=0.197  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC----
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE----  167 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~----  167 (384)
                      -++=.||...|-....      .....++|+|||-|.=.+-..+.. --.++|+||.+.+++.|++--+.-....+    
T Consensus       100 RnfNNwIKs~LI~~y~------~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f  172 (389)
T KOG1975|consen  100 RNFNNWIKSVLINLYT------KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIF  172 (389)
T ss_pred             hhhhHHHHHHHHHHHh------ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccc
Confidence            3555677665543211      234468999999997533332211 12799999999999999886653211111    


Q ss_pred             ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734          168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC  247 (384)
Q Consensus       168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c  247 (384)
                      .+.++.+|-..                        +                          .+-.-+...+.+||+|=|
T Consensus       173 ~a~f~~~Dc~~------------------------~--------------------------~l~d~~e~~dp~fDivSc  202 (389)
T KOG1975|consen  173 TAVFIAADCFK------------------------E--------------------------RLMDLLEFKDPRFDIVSC  202 (389)
T ss_pred             eeEEEEeccch------------------------h--------------------------HHHHhccCCCCCcceeee
Confidence            25666666221                        0                          000001113445999888


Q ss_pred             CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHc
Q 016734          248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV  320 (384)
Q Consensus       248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~  320 (384)
                      -==|+=+.+.                      .+=.+.++......++++|.|   +|...+...|+..|++.
T Consensus       203 QF~~HYaFet----------------------ee~ar~~l~Nva~~LkpGG~F---IgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  203 QFAFHYAFET----------------------EESARIALRNVAKCLKPGGVF---IGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             eeeEeeeecc----------------------HHHHHHHHHHHHhhcCCCcEE---EEecCcHHHHHHHHHhc
Confidence            6433322211                      123677778888888999985   45566888999999876

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.38  E-value=0.3  Score=46.18  Aligned_cols=58  Identities=17%  Similarity=0.196  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHhhccCeEE-EEEe-cCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEEecC
Q 016734          283 ITRIIEDSVALKQTFRWY-TSMV-GRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV  345 (384)
Q Consensus       283 v~~ii~eS~~l~~~~~w~-t~~v-gk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AWsf~  345 (384)
                      +..+++|+.++++.+|++ ..|| ++-.+.+..++.+++.||+...  ++.+.+   +.+..-|.
T Consensus       137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~--~d~~n~---~F~~f~F~  196 (219)
T PF05148_consen  137 WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS--KDESNK---HFVLFEFK  196 (219)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE--EE--ST---TEEEEEEE
T ss_pred             cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe--cccCCC---eEEEEEEE
Confidence            556678898888877754 3555 4566788888999999997544  344332   33455553

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=95.38  E-value=0.071  Score=56.28  Aligned_cols=47  Identities=13%  Similarity=0.182  Sum_probs=36.4

Q ss_pred             CeEEEECCcccHHHHHHHhhc----cCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734          117 VKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~----~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      ..+.|..||||-+........    ....++|-|+.+.+...|+.|...++
T Consensus       219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~  269 (501)
T TIGR00497       219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN  269 (501)
T ss_pred             CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC
Confidence            479999999998765433221    12469999999999999999987765

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=95.30  E-value=0.087  Score=49.40  Aligned_cols=63  Identities=14%  Similarity=0.052  Sum_probs=39.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH-------CCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS-------NPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~-------n~~l~~~I~~~~~d~~  177 (384)
                      .....+|||||.|-+-...|....-.+.+|||+.+...+.|+.+.+.       .+.-..++.+.++|..
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl  111 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL  111 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence            34689999999998766665444333599999999999998876543       2211235667666643

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.09  E-value=0.031  Score=52.50  Aligned_cols=70  Identities=17%  Similarity=0.315  Sum_probs=54.3

Q ss_pred             CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus        86 PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      |.-|+-.+|-.+--+....        ..+++-+.|||||-|.+...|+-.+|.--++|.||--..-++.++-|.+..
T Consensus        39 PvsP~~mDWS~~yp~f~~~--------~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR  108 (249)
T KOG3115|consen   39 PVSPQEMDWSKYYPDFRRA--------LNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR  108 (249)
T ss_pred             CCChHhCcHHHhhhhhhhh--------ccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence            5557666655554444432        135678999999999999999999999999999999999999888887653

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.95  E-value=0.59  Score=45.51  Aligned_cols=40  Identities=20%  Similarity=0.192  Sum_probs=32.0

Q ss_pred             eEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHH
Q 016734          118 KGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni  159 (384)
                      +++|+.||+|.+...+.  ..+.+ +.++|+++.|++..+.|.
T Consensus         2 ~v~dLFsG~Gg~~~gl~--~~G~~~v~a~e~~~~a~~~~~~N~   42 (275)
T cd00315           2 RVIDLFAGIGGFRLGLE--KAGFEIVAANEIDKSAAETYEANF   42 (275)
T ss_pred             cEEEEccCcchHHHHHH--HcCCEEEEEEeCCHHHHHHHHHhC
Confidence            68999999998865554  34554 678999999999888875

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=94.75  E-value=0.1  Score=50.87  Aligned_cols=69  Identities=14%  Similarity=0.154  Sum_probs=46.2

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      |.+..-+..+.+-+.... +    .-.+.+|||+|+|.|.-..++...++. .+++++|.|+.+++.++.-++..
T Consensus        12 p~~YA~~~~vl~El~~r~-p----~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   12 PATYAAVYRVLSELRKRL-P----DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             hHHHHHHHHHHHHHHHhC-c----CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            545444555555444321 1    235679999999999765444444443 47999999999999998876543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=94.75  E-value=0.19  Score=50.04  Aligned_cols=59  Identities=12%  Similarity=0.023  Sum_probs=50.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...++|.=+|.|.=+..++...++.+|+|+|.|+.|++.|++.++..   .+++.+++++..
T Consensus        21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~---~~R~~~i~~nF~   79 (305)
T TIGR00006        21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF---EGRVVLIHDNFA   79 (305)
T ss_pred             CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc---CCcEEEEeCCHH
Confidence            45899999999999888888776689999999999999999988654   357899888754

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=94.67  E-value=0.11  Score=50.52  Aligned_cols=84  Identities=12%  Similarity=0.086  Sum_probs=50.2

Q ss_pred             HHHHHHHHhhccCCcE-E--EecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc
Q 016734           61 TRELTRVLLLHDHGLN-W--WIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL  137 (384)
Q Consensus        61 v~~Lt~alL~~~fgl~-~--~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~  137 (384)
                      .+.+.+++|..||-.+ +  .+..|.+-  |=.++.+    ..+|......+. ......++||||+|.|-+...++..+
T Consensus        44 ~~~l~~~~L~~f~S~T~iNG~LgRG~MF--vfS~~Q~----~~LL~~~~~~~~-~~~~~~~lLDlGAGdG~VT~~l~~~f  116 (265)
T PF05219_consen   44 WHSLASSILSWFMSKTDINGILGRGSMF--VFSEEQF----RKLLRISGFSWN-PDWKDKSLLDLGAGDGEVTERLAPLF  116 (265)
T ss_pred             HHHHHHHHHHHHHhHHhHhhhhcCCcEE--EecHHHH----HHHhhhhccCCC-CcccCCceEEecCCCcHHHHHHHhhc
Confidence            4777777888888663 1  23333221  1122322    233332211111 11245689999999999998887654


Q ss_pred             cCCEEEEEeCcHHHHH
Q 016734          138 LGWSFVGSDMTDVALE  153 (384)
Q Consensus       138 ~~~~v~gvDid~~al~  153 (384)
                      .  +|+++|+|+.|..
T Consensus       117 ~--~v~aTE~S~~Mr~  130 (265)
T PF05219_consen  117 K--EVYATEASPPMRW  130 (265)
T ss_pred             c--eEEeecCCHHHHH
Confidence            3  6999999998843

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.64  E-value=0.046  Score=50.92  Aligned_cols=44  Identities=23%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             CCCeEEEECCcccH----HHHHHHhhc---c--CCEEEEEeCcHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANC----IYPLLGASL---L--GWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus       115 ~~~~vLDIGtGsG~----I~~~La~~~---~--~~~v~gvDid~~al~~A~~N  158 (384)
                      .+.+|...||++|-    |+++|....   .  .++++|+|||+.+++.|++=
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G   83 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG   83 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence            57899999999994    444444421   2  46999999999999999764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.64  E-value=1.1  Score=42.09  Aligned_cols=152  Identities=16%  Similarity=0.191  Sum_probs=89.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...|+|||+-.|.=+-.++... .+..|+|+|++|-.           . .. .|.++++|....  .            
T Consensus        46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~-~~-~V~~iq~d~~~~--~------------   98 (205)
T COG0293          46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P-IP-GVIFLQGDITDE--D------------   98 (205)
T ss_pred             CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c-CC-CceEEeeeccCc--c------------
Confidence            4689999999998766565554 34569999998733           1 22 488999886530  0            


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCC--ccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGT--PEE  272 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~--~~E  272 (384)
                               +           +            ..+...+  ....+|+|||-+           .|++.  |.  .++
T Consensus        99 ---------~-----------~------------~~l~~~l--~~~~~DvV~sD~-----------ap~~~--g~~~~Dh  131 (205)
T COG0293          99 ---------T-----------L------------EKLLEAL--GGAPVDVVLSDM-----------APNTS--GNRSVDH  131 (205)
T ss_pred             ---------H-----------H------------HHHHHHc--CCCCcceEEecC-----------CCCcC--CCccccH
Confidence                     0           0            0122222  234579999754           12111  11  110


Q ss_pred             ccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCe---eEEEEEEecCC
Q 016734          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSFVP  346 (384)
Q Consensus       273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t---~Rw~~AWsf~~  346 (384)
                      ..    -.......++-+..++..+|-|.+-+=+....++++..++++ |..+++.+-...+.   .=.+++|.|..
T Consensus       132 ~r----~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~-F~~v~~~KP~aSR~~S~E~y~v~~~~~~  203 (205)
T COG0293         132 AR----SMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL-FRKVKIFKPKASRKRSREIYLVAKGFKG  203 (205)
T ss_pred             HH----HHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh-hceeEEecCccccCCCceEEEEEecccc
Confidence            00    123333444556667788887776666677888888888754 56677766544442   45677777754

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.61  E-value=0.12  Score=47.08  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (384)
Q Consensus        91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~  157 (384)
                      =+.+++.+.....          .....|||.-||||..+  +|+...+-+++|+|++++.++.|++
T Consensus       177 P~~l~~~lI~~~t----------~~gdiVlDpF~GSGTT~--~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKAST----------NPGDIVLDPFAGSGTTA--VAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHHS-----------TT-EEEETT-TTTHHH--HHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhhh----------ccceeeehhhhccChHH--HHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            3556666665543          24568999999999874  4555667799999999999999975

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.50  E-value=0.077  Score=50.12  Aligned_cols=47  Identities=17%  Similarity=0.313  Sum_probs=38.1

Q ss_pred             CCeEEEECCcccHHHHHHHhh--ccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734          116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      ..+.||+|+|||.+...++.-  .++...+|||.-++.++.+++|+...
T Consensus        83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~  131 (237)
T KOG1661|consen   83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD  131 (237)
T ss_pred             CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence            457999999999888776632  24445599999999999999999765

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=94.44  E-value=0.1  Score=53.41  Aligned_cols=61  Identities=18%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCC-ceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~-~I~~~~~d~  176 (384)
                      .+.++||.=+|||.=++..+.+.++ .+|++-|+|++|++..++|++.|+ +++ ++++.+.|.
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DA  111 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDA  111 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-H
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhH
Confidence            3578999999999999999988654 589999999999999999999998 777 788888774

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=94.01  E-value=0.17  Score=49.61  Aligned_cols=153  Identities=14%  Similarity=0.138  Sum_probs=98.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ....|||+|+|.|.=...++.... ...++|.|+++.-+...+.|+++.| +. .+.+...|...               
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-~~-~v~~~~~D~~~---------------  147 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-VF-NVIVINADARK---------------  147 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--S-SEEEEESHHHH---------------
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-Cc-eEEEEeecccc---------------
Confidence            345799999999988888887765 5699999999999999999999998 54 46666554211               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                           .....  ....||.|+.-+|=-...... .+|.....-....+
T Consensus       148 -------------------------------------~~~~~--~~~~fd~VlvDaPCSg~G~i~-r~p~~~~~~~~~~~  187 (283)
T PF01189_consen  148 -------------------------------------LDPKK--PESKFDRVLVDAPCSGLGTIR-RNPDIKWRRSPEDI  187 (283)
T ss_dssp             -------------------------------------HHHHH--HTTTEEEEEEECSCCCGGGTT-TCTTHHHHE-TTHH
T ss_pred             -------------------------------------ccccc--cccccchhhcCCCccchhhhh-hccchhhccccccc
Confidence                                                 00001  134699999999975543221 23332111000000


Q ss_pred             cccCchH-HHHHHHHHHHHHhh----ccCeE--E-EEEecCCCCHHHHHHHHHHcCCeEEEEEEe
Q 016734          274 VCSGGER-AFITRIIEDSVALK----QTFRW--Y-TSMVGRKSNLKFLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       274 ~~~GGel-~Fv~~ii~eS~~l~----~~~~w--~-t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~  330 (384)
                          -++ ..=.+|++.+..+.    +.+|.  | ||-+.+.++-.-+...|+++.  +++....
T Consensus       188 ----~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~--~~~l~~~  246 (283)
T PF01189_consen  188 ----EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP--DFELVPI  246 (283)
T ss_dssp             ----HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST--SEEEECC
T ss_pred             ----chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC--CcEEEec
Confidence                013 23345888888888    77764  3 566677888888888888773  3444443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=93.84  E-value=0.3  Score=44.72  Aligned_cols=55  Identities=11%  Similarity=0.070  Sum_probs=41.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhh-ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~-~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...-||++|.|+|.|.-.+.++ .+...++++|.|++.+..-.+.-       +.+.++++|.
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------p~~~ii~gda  103 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------PGVNIINGDA  103 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------CCccccccch
Confidence            4568999999999998776655 35678999999999887654422       2355777763

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=93.65  E-value=0.095  Score=43.79  Aligned_cols=66  Identities=21%  Similarity=0.211  Sum_probs=37.0

Q ss_pred             cEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEec-----CCCCHHHHHH
Q 016734          241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG-----RKSNLKFLIS  315 (384)
Q Consensus       241 ~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg-----k~~~l~~l~~  315 (384)
                      +||+||.||||.............   ..         ....+.-.++.|..++  .|.++..+.     .....+.+.+
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~---~~---------~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~   67 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKK---KK---------KSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRK   67 (106)
T ss_pred             CcCEEEECCCChhhccccchhhcc---cc---------cCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHH
Confidence            599999999999876432211000   00         2234455666777776  555444332     3445667777


Q ss_pred             HHHHc
Q 016734          316 KLRKV  320 (384)
Q Consensus       316 ~L~~~  320 (384)
                      .|-+.
T Consensus        68 ~l~~~   72 (106)
T PF07669_consen   68 FLLNN   72 (106)
T ss_pred             HHhcC
Confidence            76543

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PRK11524 putative methyltransferase; Provisional

Probab=93.60  E-value=0.24  Score=48.44  Aligned_cols=47  Identities=13%  Similarity=0.079  Sum_probs=38.5

Q ss_pred             CCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734          114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      .....|||--+|||.-+  +|+...+-+++|+|++++.++.|++-++..
T Consensus       207 ~~GD~VLDPF~GSGTT~--~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~~  253 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTG--AVAKASGRKFIGIEINSEYIKMGLRRLDVA  253 (284)
T ss_pred             CCCCEEEECCCCCcHHH--HHHHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence            35678999999999774  445556778999999999999999987643

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=93.43  E-value=0.13  Score=50.34  Aligned_cols=44  Identities=16%  Similarity=0.140  Sum_probs=36.4

Q ss_pred             CCCeEEEECCccc----HHHHHHHhhcc-----CCEEEEEeCcHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGAN----CIYPLLGASLL-----GWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus       115 ~~~~vLDIGtGsG----~I~~~La~~~~-----~~~v~gvDid~~al~~A~~N  158 (384)
                      ...+|.-.||+||    .|+.+|....+     .++|+|+|||..+|+.|+.=
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G  148 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG  148 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence            4789999999999    56666666554     57999999999999999753

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=93.12  E-value=0.43  Score=37.83  Aligned_cols=55  Identities=24%  Similarity=0.282  Sum_probs=36.4

Q ss_pred             EEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          119 GFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       119 vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ++|+|||+|... .++..... ..++|+|+++.++..++..... .... .+.+...+.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~  107 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLG-LVDFVVADA  107 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCC-ceEEEEecc
Confidence            999999999865 33322222 5899999999999996655543 2111 156666653

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=92.99  E-value=0.63  Score=45.69  Aligned_cols=85  Identities=19%  Similarity=0.109  Sum_probs=48.7

Q ss_pred             CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHh-h-ccCCEEEEEeCcHHHHHHHHHHHH-HCCC
Q 016734           88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGA-S-LLGWSFVGSDMTDVALEWAEKNVK-SNPH  164 (384)
Q Consensus        88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~-~-~~~~~v~gvDid~~al~~A~~Ni~-~n~~  164 (384)
                      .|--.+|+..+..-+.....   .....+.+|+=||+|.=-+..++.. . .++..|+++|+|++|++.|++-++ ..+ 
T Consensus        96 FpYy~nY~~L~~lE~~~l~~---~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~-  171 (276)
T PF03059_consen   96 FPYYPNYEKLVRLEYAALRI---HAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG-  171 (276)
T ss_dssp             STTHHHHHHHHHHHHH-HTT-----TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H-
T ss_pred             CCcHHHHHHHHHHHHHHHhh---cCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc-
Confidence            36667777766533321100   0112346999999997666555443 3 357889999999999999999888 455 


Q ss_pred             CCCceEEEEcCC
Q 016734          165 ISELIEIRKVDN  176 (384)
Q Consensus       165 l~~~I~~~~~d~  176 (384)
                      |+.++.++.+|.
T Consensus       172 L~~~m~f~~~d~  183 (276)
T PF03059_consen  172 LSKRMSFITADV  183 (276)
T ss_dssp             H-SSEEEEES-G
T ss_pred             ccCCeEEEecch
Confidence            788999998874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK11524 putative methyltransferase; Provisional

Probab=92.86  E-value=0.36  Score=47.16  Aligned_cols=74  Identities=18%  Similarity=0.152  Sum_probs=44.9

Q ss_pred             CCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHH
Q 016734          238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL  317 (384)
Q Consensus       238 ~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L  317 (384)
                      .+++||+|++||||..........          +.+...--+.+....+.++.++++.+|.+.+.++ ...+.. ...+
T Consensus        24 ~~~siDlIitDPPY~~~~~~~~~~----------~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~-~~~~~~-~~~~   91 (284)
T PRK11524         24 PSESVDLIFADPPYNIGKNFDGLI----------EAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS-TENMPF-IDLY   91 (284)
T ss_pred             ccCcccEEEECCCccccccccccc----------ccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-chhhhH-HHHH
Confidence            357899999999997522111100          0011011256778899999999999998877655 444443 3444


Q ss_pred             HHcCCe
Q 016734          318 RKVGVT  323 (384)
Q Consensus       318 ~~~g~~  323 (384)
                      .+.|+.
T Consensus        92 ~~~~f~   97 (284)
T PRK11524         92 CRKLFT   97 (284)
T ss_pred             HhcCcc
Confidence            455653

>PHA01634 hypothetical protein

Probab=92.64  E-value=0.3  Score=42.86  Aligned_cols=47  Identities=9%  Similarity=-0.173  Sum_probs=36.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      ...+|+|||.+.|.-++..+.  .++ .|+++|.++...+..++|++.|+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l--~GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLL--RGASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             cCCEEEEecCCccchhhHHhh--cCccEEEEeccCHHHHHHHHHHhhhhe
Confidence            467899999877754444432  343 79999999999999999999886

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=92.64  E-value=1.6  Score=42.77  Aligned_cols=42  Identities=21%  Similarity=0.333  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhhcc-CeEEEEEec-CCCCHHHHHHHHHHcCCeE
Q 016734          283 ITRIIEDSVALKQT-FRWYTSMVG-RKSNLKFLISKLRKVGVTI  324 (384)
Q Consensus       283 v~~ii~eS~~l~~~-~~w~t~~vg-k~~~l~~l~~~L~~~g~~~  324 (384)
                      +...+.|+.++++. |.||..+|. +-++...+...|.++||..
T Consensus       243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~  286 (325)
T KOG3045|consen  243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV  286 (325)
T ss_pred             HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee
Confidence            44556777776665 457778874 4455677788888999963

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=92.28  E-value=0.43  Score=48.30  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=36.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...++|||||++|.-.-.|..+  +.+|+|||..+-+     ..+..+    .+|..+..+.
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-----~~L~~~----~~V~h~~~d~  261 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-----QSLMDT----GQVEHLRADG  261 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-----HhhhCC----CCEEEEeccC
Confidence            4568999999999987777654  6799999966532     223333    3688877764

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=92.25  E-value=4.7  Score=38.34  Aligned_cols=43  Identities=14%  Similarity=0.102  Sum_probs=28.0

Q ss_pred             HHHHHHHhhccCeE-----EEEEe-------cCCCCHHHHHHHHHHcCCeEEEEE
Q 016734          286 IIEDSVALKQTFRW-----YTSMV-------GRKSNLKFLISKLRKVGVTIVKTT  328 (384)
Q Consensus       286 ii~eS~~l~~~~~w-----~t~~v-------gk~~~l~~l~~~L~~~g~~~v~~~  328 (384)
                      |++.+..++...|.     +..++       +++-..+.+..+|...||..++..
T Consensus       126 Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~  180 (219)
T PF11968_consen  126 MLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK  180 (219)
T ss_pred             HHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence            44445555555555     33333       355566889999999999877765

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=92.12  E-value=0.46  Score=47.57  Aligned_cols=60  Identities=12%  Similarity=0.063  Sum_probs=41.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhc----cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE--EEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI--RKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~----~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~--~~~d~~  177 (384)
                      ...++|+|||+|-=...|...+    ..+.++++|||.++|+.|..++..-. .. .+.+  +.+|..
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~p-~l~v~~l~gdy~  142 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-FS-HVRCAGLLGTYD  142 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-CC-CeEEEEEEecHH
Confidence            3479999999997433333332    25789999999999999999998222 22 2444  666643

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK13699 putative methylase; Provisional

Probab=91.82  E-value=0.81  Score=43.45  Aligned_cols=46  Identities=11%  Similarity=0.151  Sum_probs=37.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      ....|||.-||||..+  +|+...+-+++|+|++++..+.|.+.++.-
T Consensus       163 ~g~~vlDpf~Gsgtt~--~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        163 PNAIVLDPFAGSGSTC--VAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCEEEeCCCCCCHHH--HHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            4568999999999874  444456778999999999999998888654

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=90.77  E-value=0.15  Score=41.63  Aligned_cols=55  Identities=22%  Similarity=0.170  Sum_probs=15.3

Q ss_pred             EEECCcccHHHHHHHhhccC---CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          120 FDIGTGANCIYPLLGASLLG---WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       120 LDIGtGsG~I~~~La~~~~~---~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      |||||..|.-...+++....   .+++++|..+. .+.++++++..+ +.+++++++++.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-~~~~~~~~~g~s   58 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-LSDRVEFIQGDS   58 (106)
T ss_dssp             --------------------------EEEESS-------------GG-G-BTEEEEES-T
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-CCCeEEEEEcCc
Confidence            68998888776666655432   37999999996 455566666555 777899999874

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.61  E-value=0.57  Score=47.65  Aligned_cols=58  Identities=17%  Similarity=0.029  Sum_probs=48.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ..+|+|-=+|||+=++..+.+.+..+++.-||||+|++.+++|++.|. .+ .+.+++.|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~-~~~v~n~D  110 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GE-DAEVINKD  110 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cc-cceeecch
Confidence            578999999999999999988887799999999999999999999993 23 34555544

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=90.51  E-value=0.5  Score=47.11  Aligned_cols=60  Identities=18%  Similarity=0.044  Sum_probs=46.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ....+||.=-|.|.-+..+..++++.+++|+|.|++|++.|+++++..   .+++.+++++..
T Consensus        20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F~   79 (310)
T PF01795_consen   20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNFS   79 (310)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-GG
T ss_pred             CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccHH
Confidence            356899999999999888888888899999999999999998877643   468999988754

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=90.31  E-value=1.4  Score=42.98  Aligned_cols=75  Identities=9%  Similarity=-0.155  Sum_probs=51.2

Q ss_pred             ccCCcEEEecCCCccCCCcCHHHHHH--HHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734           71 HDHGLNWWIPDGQLCPTVPNRSNYIH--WIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrvP~r~~yi~--~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid  148 (384)
                      ..||.=+-++ ++++   -++-+++.  .+.-.....       -..+.+||=||.|-|...--+.+. +. +|+-||||
T Consensus        37 ~~fGr~LvLD-~~~~---te~dEfiYHEmLvHppl~~-------h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID  103 (262)
T PRK00536         37 KDFGEIAMLN-KQLL---FKNFLHIESELLAHMGGCT-------KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQAD  103 (262)
T ss_pred             cccccEEEEe-eeee---ecchhhhHHHHHHHHHHhh-------CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECC
Confidence            3677777777 6664   34443332  222221211       235689999999999987777643 44 99999999


Q ss_pred             HHHHHHHHHH
Q 016734          149 DVALEWAEKN  158 (384)
Q Consensus       149 ~~al~~A~~N  158 (384)
                      ++.++.|++-
T Consensus       104 ~~Vv~~~k~~  113 (262)
T PRK00536        104 EKILDSFISF  113 (262)
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=90.15  E-value=0.22  Score=44.76  Aligned_cols=36  Identities=14%  Similarity=0.087  Sum_probs=29.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDV  150 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~  150 (384)
                      ...++||+||+.|...-.+..+. +.++|+|+|+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            45799999999999887777665 4689999999875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK13699 putative methylase; Provisional

Probab=88.96  E-value=2.9  Score=39.67  Aligned_cols=77  Identities=12%  Similarity=0.320  Sum_probs=51.2

Q ss_pred             CCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHH
Q 016734          238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL  317 (384)
Q Consensus       238 ~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L  317 (384)
                      +++++|+|++=|||.-......  .+ ...+.        .-.++....+.++.+++++++++.+..+ ..+...+...+
T Consensus        17 pd~SVDLIiTDPPY~i~~~~~~--~~-~~~~~--------~~~ew~~~~l~E~~RVLKpgg~l~if~~-~~~~~~~~~al   84 (227)
T PRK13699         17 PDNAVDFILTDPPYLVGFRDRQ--GR-TIAGD--------KTDEWLQPACNEMYRVLKKDALMVSFYG-WNRVDRFMAAW   84 (227)
T ss_pred             CccccceEEeCCCcccccccCC--Cc-ccccc--------cHHHHHHHHHHHHHHHcCCCCEEEEEec-cccHHHHHHHH
Confidence            4789999999999974311100  00 00010        0246778889999999888888766555 45577788889


Q ss_pred             HHcCCeEEE
Q 016734          318 RKVGVTIVK  326 (384)
Q Consensus       318 ~~~g~~~v~  326 (384)
                      ++.|+....
T Consensus        85 ~~~GF~l~~   93 (227)
T PRK13699         85 KNAGFSVVG   93 (227)
T ss_pred             HHCCCEEee
Confidence            999986433

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=88.77  E-value=0.33  Score=41.24  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=23.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid  148 (384)
                      .....+|||||.|.+--+|.++  |..-.|+|+-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC--CCCccccccc
Confidence            4557999999999877666644  4556788863

; GO: 0008168 methyltransferase activity

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=87.88  E-value=26  Score=33.57  Aligned_cols=133  Identities=11%  Similarity=0.038  Sum_probs=81.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+||-+|..||.--..++.-. +.-.|+|||.++.+.+-.-.-+++-.    +|--+..|...  |             
T Consensus        74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~----NIiPIl~DAr~--P-------------  134 (229)
T PF01269_consen   74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP----NIIPILEDARH--P-------------  134 (229)
T ss_dssp             T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST----TEEEEES-TTS--G-------------
T ss_pred             CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC----ceeeeeccCCC--h-------------
Confidence            4589999999998766666543 35689999999988766554444332    36666666432  1             


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                         .-+..+   -+.+|+|+|.=.          .|..          
T Consensus       135 -----------------------------------~~Y~~l---v~~VDvI~~DVa----------Qp~Q----------  156 (229)
T PF01269_consen  135 -----------------------------------EKYRML---VEMVDVIFQDVA----------QPDQ----------  156 (229)
T ss_dssp             -----------------------------------GGGTTT---S--EEEEEEE-S----------STTH----------
T ss_pred             -----------------------------------HHhhcc---cccccEEEecCC----------ChHH----------
Confidence                                               112222   247999988621          1211          


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCC---C--C----HHHHHHHHHHcCCeEEEEEEeeCC
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRK---S--N----LKFLISKLRKVGVTIVKTTEFVQG  333 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~---~--~----l~~l~~~L~~~g~~~v~~~e~~qG  333 (384)
                              .+-++..+..+++.+|.+..++--.   +  .    +..-++.|++.|++..+.+.+..=
T Consensus       157 --------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy  216 (229)
T PF01269_consen  157 --------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPY  216 (229)
T ss_dssp             --------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTT
T ss_pred             --------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCC
Confidence                    3444566777899999987776310   1  1    244567888889987777766443

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=87.54  E-value=0.37  Score=49.87  Aligned_cols=59  Identities=20%  Similarity=0.280  Sum_probs=49.6

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc-eEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~-I~~~~~d~~  177 (384)
                      +..|.|+.||.|-.++-++.+  +++|++-|.+++++++-+.|+..|. +... |+++.-|..
T Consensus       250 gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNk-v~~~~iei~Nmda~  309 (495)
T KOG2078|consen  250 GEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNK-VDPSAIEIFNMDAK  309 (495)
T ss_pred             cchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccc-cchhheeeecccHH
Confidence            457899999999887766654  5999999999999999999999997 5554 998887754

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=86.55  E-value=0.55  Score=44.18  Aligned_cols=60  Identities=17%  Similarity=0.079  Sum_probs=29.4

Q ss_pred             CCCeEEEECCcccHHHH---HHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYP---LLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~---~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ++..|+++|+=.|.=++   .+.+.+ ...+|+|+||+......  .-++.+. +.++|+++++|-.
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~   95 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSI   95 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCC
Confidence            56799999995543333   333334 56799999997554332  2233455 6789999999844

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=85.83  E-value=4.4  Score=40.36  Aligned_cols=59  Identities=15%  Similarity=0.037  Sum_probs=50.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ....||.--|.|.-+-.+..+++. .+++|+|.|+.|++.|++....++   +++.++++...
T Consensus        24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~   83 (314)
T COG0275          24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFA   83 (314)
T ss_pred             CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHH
Confidence            468999999999988888888874 469999999999999999988764   58999998644

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.69  E-value=0.35  Score=44.12  Aligned_cols=49  Identities=16%  Similarity=0.100  Sum_probs=40.0

Q ss_pred             CCCeEEEECCcccHHH-HHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734          115 DKVKGFDIGTGANCIY-PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~-~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      ...+||++|.|--+++ +++|..-+...|..+|-++++++..++.+..|.
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~   78 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM   78 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc
Confidence            3468999999966654 556667788899999999999999999888773

>PRK10458 DNA cytosine methylase; Provisional

Probab=84.60  E-value=4.3  Score=42.84  Aligned_cols=72  Identities=14%  Similarity=0.052  Sum_probs=48.2

Q ss_pred             CCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHH
Q 016734           82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV  159 (384)
Q Consensus        82 ~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni  159 (384)
                      +..+|+ +-++.-+..+.+++....  .. ......+++|+-||.|.+..-+  +..+.+ +.++|+++.|.+.=+.|.
T Consensus        58 ~~~~~~-~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~iDLFsGiGGl~lGf--e~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         58 GKSAWH-RLSEAEFAHLQTLLPKPP--AH-HPHYAFRFIDLFAGIGGIRRGF--EAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CCCCCC-CccHHHHHHHHHhcccCc--cc-CcCCCceEEEeCcCccHHHHHH--HHcCCEEEEEEechHHHHHHHHHHc
Confidence            445555 455556667777775421  11 2245679999999999875444  444665 567999999988887774

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=84.51  E-value=3.3  Score=42.50  Aligned_cols=60  Identities=15%  Similarity=0.058  Sum_probs=42.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHH---HCC-CCC-CceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVK---SNP-HIS-ELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~---~n~-~l~-~~I~~~~~d  175 (384)
                      ...++|=+|-|-|...-.|. ++|+ -+++-||.||++++.|++|..   .|+ .++ .|++++..|
T Consensus       289 ~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD  354 (508)
T COG4262         289 GARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD  354 (508)
T ss_pred             ccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc
Confidence            34589999999996554443 6785 489999999999999997653   221 122 367776655

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=84.39  E-value=2.3  Score=41.59  Aligned_cols=59  Identities=19%  Similarity=0.147  Sum_probs=38.1

Q ss_pred             CeEEEECCccc---HHHHHHHh-hccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          117 VKGFDIGTGAN---CIYPLLGA-SLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       117 ~~vLDIGtGsG---~I~~~La~-~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ...||||||--   .+- .+++ ..|.++|+-||+||.++..++.-+..+.  ..+..++++|..+
T Consensus        70 rQFLDlGsGlPT~~nvH-evAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~r~  132 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVH-EVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADLRD  132 (267)
T ss_dssp             -EEEEET--S--SS-HH-HHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--TT-
T ss_pred             ceEEEcccCCCCCCCHh-HHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCCCC
Confidence            47999999943   222 2333 3589999999999999999999988774  2358899999764

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=84.00  E-value=2.8  Score=36.11  Aligned_cols=54  Identities=13%  Similarity=0.079  Sum_probs=32.3

Q ss_pred             EECCcccHHHHHH----HhhccCCEEEEEeCcHHHHHHHHHH--HHHCCCCCCceEEEEcC
Q 016734          121 DIGTGANCIYPLL----GASLLGWSFVGSDMTDVALEWAEKN--VKSNPHISELIEIRKVD  175 (384)
Q Consensus       121 DIGtGsG~I~~~L----a~~~~~~~v~gvDid~~al~~A~~N--i~~n~~l~~~I~~~~~d  175 (384)
                      |||++.|.....+    +...++.+++++|.+|..++..+.|  +..|+ ....++++...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~-~~~~~~~~~~~   60 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND-KDGEVEFHPYA   60 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT-TSTTGGEEEE-
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC-CCceEEEEEee
Confidence            8999999333222    2345678999999999999999999  77775 33346666543

; PDB: 2PY6_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=82.81  E-value=2.3  Score=41.02  Aligned_cols=41  Identities=20%  Similarity=0.111  Sum_probs=31.6

Q ss_pred             eEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHH
Q 016734          118 KGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK  160 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~  160 (384)
                      +++|+.||.|.+...+  +..++ .+.|+|+|+.|.+.-+.|..
T Consensus         2 ~~~dlFsG~Gg~~~g~--~~ag~~~~~a~e~~~~a~~~y~~N~~   43 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGL--EQAGFEVVWAVEIDPDACETYKANFP   43 (335)
T ss_dssp             EEEEET-TTTHHHHHH--HHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred             cEEEEccCccHHHHHH--HhcCcEEEEEeecCHHHHHhhhhccc
Confidence            6899999999886544  44555 46689999999998888864

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=82.06  E-value=2.6  Score=44.61  Aligned_cols=56  Identities=21%  Similarity=0.405  Sum_probs=38.9

Q ss_pred             CcEEEecCC-CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhh
Q 016734           74 GLNWWIPDG-QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS  136 (384)
Q Consensus        74 gl~~~vp~~-~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~  136 (384)
                      |-.|.+|.| ...|.  +-..||+.|.+++....     ..+.-..+||+|||+|.++..|..+
T Consensus        82 gd~~~FPgggt~F~~--Ga~~Yid~i~~~~~~~~-----~~g~iR~~LDvGcG~aSF~a~l~~r  138 (506)
T PF03141_consen   82 GDKFRFPGGGTMFPH--GADHYIDQIAEMIPLIK-----WGGGIRTALDVGCGVASFGAYLLER  138 (506)
T ss_pred             CCEEEeCCCCccccC--CHHHHHHHHHHHhhccc-----cCCceEEEEeccceeehhHHHHhhC
Confidence            334667665 44444  56789999999886521     1234457999999999998887654

; GO: 0008168 methyltransferase activity

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=81.98  E-value=6.9  Score=37.22  Aligned_cols=46  Identities=15%  Similarity=0.065  Sum_probs=33.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~  161 (384)
                      ...+.||.|+|-|-+.--|..... -+|..||..+..++.|++.+..
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~  100 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGK  100 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC
T ss_pred             CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcc
Confidence            457899999999999865544333 3899999999999999987654

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
2h00_A	254	Human Methyltransferase 10 Domain Containing Protei		4e-48

>pdb|2H00|A Chain A, Human Methyltransferase 10 Domain Containing Protein Length = 254

Iteration: 1
 Score =  188 bits (478), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 162/305 (53%), Gaps = 64/305 (20%)
Query: 49  GRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIP 108
           GR  +++ D  A R LT  LL  D GL+  IP  +L PTVP R NYIHW+EDL+      
Sbjct: 3   GRVSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ--- 59
Query: 109 TTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168
             S      +G DIGTGA+CIYPLLGA+L GW F+ +++ D+   +A+KNV+ N ++S+L
Sbjct: 60  -DSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDL 117
Query: 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228
           I++ KV         Q++L   ++++ES +                              
Sbjct: 118 IKVVKVP--------QKTLLMDALKEESEI------------------------------ 139
Query: 229 PPVLVGVVRDGEQFDFCICNPPFFESMEEA-GLN--------PKTSCGGTPEEMVCSGGE 279
                        +DFC+CNPPFF +  EA G+N        P +   G   E++  GGE
Sbjct: 140 ------------IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGE 187
Query: 280 RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWG 339
             F+ RII DS+ LK+  RWY+ M+G+K +L  L  +LR  GV  V  TEF QG+T RW 
Sbjct: 188 LEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWA 247
Query: 340 LAWSF 344
           LAWSF
Sbjct: 248 LAWSF 252

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
2h00_A	254	Methyltransferase 10 domain containing protein; st	3e-79

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score =  243 bits (620), Expect = 3e-79
 Identities = 110/305 (36%), Positives = 151/305 (49%), Gaps = 64/305 (20%)

Query: 49  GRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIP 108
           GR  +++ D  A R LT  LL  D GL+  IP  +L PTVP R NYIHW+EDL+      
Sbjct: 3   GRVSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSD 62

Query: 109 TTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168
                    +G DIGTGA+CIYPLLGA+L GW F+ +++ D+   +A+KNV+ N ++S+L
Sbjct: 63  ----KSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDL 117

Query: 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228
           I++ K                     +  + M    +E                      
Sbjct: 118 IKVVK-------------------VPQKTLLMDALKEE---------------------- 136

Query: 229 PPVLVGVVRDGEQFDFCICNPPFFESMEEA---------GLNPKTSCGGTPEEMVCSGGE 279
                        +DFC+CNPPFF +  EA            P +   G   E++  GGE
Sbjct: 137 ---------SEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGE 187

Query: 280 RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWG 339
             F+ RII DS+ LK+  RWY+ M+G+K +L  L  +LR  GV  V  TEF QG+T RW 
Sbjct: 188 LEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWA 247

Query: 340 LAWSF 344
           LAWSF
Sbjct: 248 LAWSF 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
2h00_A	254	Methyltransferase 10 domain containing protein; st	100.0
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.95
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.93
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.92
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.89
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.74
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.73
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.7
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.63
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.62
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.59
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.58
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.56
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.56
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.55
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.52
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.52
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.51
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.51
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.49
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.48
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.48
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.48
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.47
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.47
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.46
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.45
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.45
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.45
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.45
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.45
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.44
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.44
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.44
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.44
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.43
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.42
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.42
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.42
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.42
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.41
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.41
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.4
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.39
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.39
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.39
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.38
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.38
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.38
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.37
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.36
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.36
3ocj_A	305	Putative exported protein; structural genomics, PS	99.36
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.35
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.35
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.35
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.35
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.35
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.34
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.33
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.33
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.33
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.33
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.33
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.33
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.32
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.32
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.31
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.3
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.3
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.3
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.3
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.29
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.29
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.28
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.28
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.28
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.27
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.26
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.26
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.26
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.25
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.24
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.24
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.24
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.24
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.24
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.24
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.24
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.23
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.23
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.23
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.22
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.22
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.22
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.22
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.21
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.2
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.19
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.19
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.19
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.19
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.17
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.17
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.17
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.17
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.16
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.16
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.16
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.16
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.16
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.16
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.15
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.15
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.14
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.14
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.14
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.13
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.13
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.13
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.13
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.13
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.13
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.12
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.12
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.12
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.12
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.11
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.11
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.11
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.11
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.11
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.1
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.1
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.1
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.09
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.09
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.08
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.08
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.08
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.08
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.08
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.08
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.08
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.08
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.08
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.07
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.07
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.07
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.07
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.07
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.06
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.05
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.04
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.04
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.04
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.04
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.04
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.04
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.04
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.03
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.03
2o07_A	304	Spermidine synthase; structural genomics, structur	99.03
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.02
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.02
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.02
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.02
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.02
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.01
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.01
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.01
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.01
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.0
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.0
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.99
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.99
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.99
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.99
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.98
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.98
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.98
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.97
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.97
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.97
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.97
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.97
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.97
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.97
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.96
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.96
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.95
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.95
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.95
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.94
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.94
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.94
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.94
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.93
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.93
3khk_A	544	Type I restriction-modification system methylation	98.93
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.93
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.93
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.92
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.92
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.92
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.9
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.9
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.9
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.9
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.89
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.89
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.89
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.89
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.88
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.87
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.87
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.87
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.87
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.87
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.86
3lkd_A	542	Type I restriction-modification system methyltrans	98.86
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.86
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.86
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.85
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.85
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.84
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.84
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.83
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.82
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.81
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.81
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.81
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.8
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.78
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.76
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.76
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.75
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.74
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.74
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.7
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.7
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.69
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.68
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.68
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.66
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.64
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.64
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.63
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.63
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.63
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.62
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.61
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.56
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.56
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.53
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.47
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.45
3ufb_A	530	Type I restriction-modification system methyltran	98.44
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.44
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.42
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.42
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.4
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.39
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.33
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.32
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.26
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.24
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.23
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.18
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.13
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.09
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.06
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.99
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.82
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.78
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.74
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.66
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.6
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.58
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.57
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.51
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.43
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.28
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.13
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.09
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.06
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.73
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.67
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.54
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.19
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.32
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.25
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	94.63
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	94.0
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.75
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	93.43
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.16
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	92.75
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	92.31
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	91.04
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	90.78
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	89.11
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	88.74
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	88.4
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	86.42
3me5_A	482	Cytosine-specific methyltransferase; structural ge	84.95
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	83.82
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	82.4
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	81.58

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=100.00  E-value=1.5e-37  Score=291.37  Aligned_cols=242  Identities=45%  Similarity=0.807  Sum_probs=193.9

Q ss_pred             CCCccccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCccc
Q 016734           48 DGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGAN  127 (384)
Q Consensus        48 ~g~~~idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG  127 (384)
                      +|+.+|||+++++++.|+++++++|||++|.+++++|+|++|+|..+..++.+++.....    ......+|||+|||+|
T Consensus         2 ~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~----~~~~~~~vLDlG~G~G   77 (254)
T 2h00_A            2 SGRVSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDS----DKSTLRRGIDIGTGAS   77 (254)
T ss_dssp             ---CCSCTTSHHHHHHHHHHHHHHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCG----GGCCCCEEEEESCTTT
T ss_pred             CcceEeecCChHHHHHHHHHHHHHcCCeeeecCccccCCCccchHHHHHHHHHHHhhccc----cCCCCCEEEEeCCChh
Confidence            478899999999999999999999999999999999999988898999888888753210    0013568999999999


Q ss_pred             HHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcC
Q 016734          128 CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEE  207 (384)
Q Consensus       128 ~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (384)
                      +++..++.+.++++|+|+|+|+.+++.|++|++.++ +.++++++++|..+                             
T Consensus        78 ~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-----------------------------  127 (254)
T 2h00_A           78 CIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKT-----------------------------  127 (254)
T ss_dssp             THHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTC-----------------------------
T ss_pred             HHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC-CCccEEEEEcchhh-----------------------------
Confidence            999999988888999999999999999999999997 88889999987431                             


Q ss_pred             CCCCCCCCCCCCcCCCCCCCCCCcccccccC-CCcEEEEEECCCcccchhh-h--------ccCCccccCCCcccccccC
Q 016734          208 AEPSSSSSFNLPAGAQSSYHGPPVLVGVVRD-GEQFDFCICNPPFFESMEE-A--------GLNPKTSCGGTPEEMVCSG  277 (384)
Q Consensus       208 ~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~-~~~fD~i~cNPPy~~s~~~-~--------~~~p~~~~~g~~~E~~~~G  277 (384)
                                            .++..+... +++||+|+|||||+....+ .        ..+|..++.+...+++.+|
T Consensus       128 ----------------------~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkpg  185 (254)
T 2h00_A          128 ----------------------LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEG  185 (254)
T ss_dssp             ----------------------SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHH
T ss_pred             ----------------------hhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecC
Confidence                                  001111101 2589999999999976521 1        1235555556677889999


Q ss_pred             chHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEEecC
Q 016734          278 GERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV  345 (384)
Q Consensus       278 Gel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AWsf~  345 (384)
                      |.+.|+..+++++..++.+.+|+.+++|....++.+.+.|++.|++.+++.++.+|++.||++||+|.
T Consensus       186 G~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~g~~~~~~~~w~~~  253 (254)
T 2h00_A          186 GELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWSFY  253 (254)
T ss_dssp             THHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEEESC
T ss_pred             CEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEEecCCceEEEEEeecc
Confidence            99999999999998888999999999998888899999999999999999999999999999999996

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.95  E-value=9e-27  Score=214.05  Aligned_cols=215  Identities=17%  Similarity=0.249  Sum_probs=159.3

Q ss_pred             ccccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCc-ccHH
Q 016734           51 PRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTG-ANCI  129 (384)
Q Consensus        51 ~~idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtG-sG~I  129 (384)
                      .++||+++++++.++++++++|||..+.+.+++++|+ |+++..+  +...+           ....+|||+||| +|.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~l~--~~~~~-----------~~~~~vLDlG~G~~G~~   70 (230)
T 3evz_A            5 GKLDFSNRQARILYNKAIAKALFGLDIEYHPKGLVTT-PISRYIF--LKTFL-----------RGGEVALEIGTGHTAMM   70 (230)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHCCCCCCCTTSCCCC-HHHHHHH--HHTTC-----------CSSCEEEEECCTTTCHH
T ss_pred             ceeeecCHHHHHHHHHHHHHHhcCCceecCCCeEeCC-CchhhhH--hHhhc-----------CCCCEEEEcCCCHHHHH
Confidence            4689999999999999999999999999999999999 7664321  22111           134689999999 9999


Q ss_pred             HHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCC
Q 016734          130 YPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAE  209 (384)
Q Consensus       130 ~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (384)
                      +..++... +.+|+|+|+|+.+++.|++|++.++ +  +++++.+|...                               
T Consensus        71 ~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~--~v~~~~~d~~~-------------------------------  115 (230)
T 3evz_A           71 ALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN-S--NVRLVKSNGGI-------------------------------  115 (230)
T ss_dssp             HHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT-C--CCEEEECSSCS-------------------------------
T ss_pred             HHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC-C--CcEEEeCCchh-------------------------------
Confidence            99888776 7899999999999999999999997 5  68999887421                               


Q ss_pred             CCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHH
Q 016734          210 PSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIED  289 (384)
Q Consensus       210 ~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~e  289 (384)
                                            +..+  .+++||+|+|||||+...+....+|..++.+...       ++.++..++++
T Consensus       116 ----------------------~~~~--~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~  164 (230)
T 3evz_A          116 ----------------------IKGV--VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKY-------GEEFSVKLLEE  164 (230)
T ss_dssp             ----------------------STTT--CCSCEEEEEECCCCC---------------CCSS-------SCHHHHHHHHH
T ss_pred             ----------------------hhhc--ccCceeEEEECCCCcCCccccccChhhhhccCcc-------chHHHHHHHHH
Confidence                                  0111  2468999999999998766444444444433332       45777899999


Q ss_pred             HHHhhccCeEEEEEecC-CCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEEecCC
Q 016734          290 SVALKQTFRWYTSMVGR-KSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVP  346 (384)
Q Consensus       290 S~~l~~~~~w~t~~vgk-~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AWsf~~  346 (384)
                      +.++++.+|++.+.+.. ..+...+.+.+++.|+ .+..+++.+|...+++++++-..
T Consensus       165 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~g~~~~~~l~f~~~~  221 (230)
T 3evz_A          165 AFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGY-SVKDIKFKVGTRWRHSLIFFKGI  221 (230)
T ss_dssp             HGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTC-EEEEEEECCCC-CEEEEEEECCC
T ss_pred             HHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCC-ceEEEEecCCCeEEEEEEEeccc
Confidence            99999999998776653 3578899999999999 57888999999999999987643

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.93  E-value=9e-25  Score=207.88  Aligned_cols=194  Identities=20%  Similarity=0.212  Sum_probs=160.1

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      .+|||+++.+.+++|+|| |+++.++.++.+.+..          ...+|||+|||+|+++..++...++++++|+|+|+
T Consensus        75 ~~f~~~~~~~~~~~~ipr-~~te~l~~~~l~~~~~----------~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~  143 (276)
T 2b3t_A           75 REFWSLPLFVSPATLIPR-PDTECLVEQALARLPE----------QPCRILDLGTGTGAIALALASERPDCEIIAVDRMP  143 (276)
T ss_dssp             EEETTEEEECCTTSCCCC-TTHHHHHHHHHHHSCS----------SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSH
T ss_pred             eEECCceEEeCCCCcccC-chHHHHHHHHHHhccc----------CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCH
Confidence            379999999999999999 9999999999887641          24589999999999999999888899999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      .+++.|++|++.++ +. ++.++.+|..+                                                   
T Consensus       144 ~~l~~a~~n~~~~~-~~-~v~~~~~d~~~---------------------------------------------------  170 (276)
T 2b3t_A          144 DAVSLAQRNAQHLA-IK-NIHILQSDWFS---------------------------------------------------  170 (276)
T ss_dssp             HHHHHHHHHHHHHT-CC-SEEEECCSTTG---------------------------------------------------
T ss_pred             HHHHHHHHHHHHcC-CC-ceEEEEcchhh---------------------------------------------------
Confidence            99999999999987 65 68988876421                                                   


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhh------ccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEE
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEA------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM  303 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~------~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~  303 (384)
                          .+  ..++||+|+|||||+...+..      ..+|..++.|..+       ++.++..+++++..+++.+|++.++
T Consensus       171 ----~~--~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~-------g~~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          171 ----AL--AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADS-------GMADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             ----GG--TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHH-------HTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ----hc--ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCc-------HHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                01  145799999999999865411      1345444332221       4789999999999999999999998


Q ss_pred             ecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEE
Q 016734          304 VGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW  342 (384)
Q Consensus       304 vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AW  342 (384)
                      ++ ..+.+.+.+.|++.|+..+.+..+..|+ .|+++|.
T Consensus       238 ~~-~~~~~~~~~~l~~~Gf~~v~~~~d~~g~-~r~~~~~  274 (276)
T 2b3t_A          238 HG-WQQGEAVRQAFILAGYHDVETCRDYGDN-ERVTLGR  274 (276)
T ss_dssp             CC-SSCHHHHHHHHHHTTCTTCCEEECTTSS-EEEEEEE
T ss_pred             EC-chHHHHHHHHHHHCCCcEEEEEecCCCC-CcEEEEE
Confidence            88 7889999999999999989999999887 8888775

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.92  E-value=1.3e-24  Score=209.46  Aligned_cols=189  Identities=20%  Similarity=0.248  Sum_probs=149.2

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      .+|||++|.+.+++|+|| |+++.+++++.+.+...         ...+|||+|||+|++++.++.. ++++|+|+|+|+
T Consensus        88 ~~f~~~~~~v~~~~lipr-~~te~lv~~~l~~~~~~---------~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~  156 (284)
T 1nv8_A           88 KEFMGLSFLVEEGVFVPR-PETEELVELALELIRKY---------GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSS  156 (284)
T ss_dssp             EEETTEEEECCTTSCCCC-TTHHHHHHHHHHHHHHH---------TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCH
T ss_pred             eEECCeEEEeCCCceecC-hhHHHHHHHHHHHhccc---------CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCH
Confidence            469999999999999999 99999999999877531         2358999999999999999988 999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      .+++.|++|++.++ +.+++.++++|..+                                                   
T Consensus       157 ~al~~A~~n~~~~~-l~~~v~~~~~D~~~---------------------------------------------------  184 (284)
T 1nv8_A          157 KAVEIARKNAERHG-VSDRFFVRKGEFLE---------------------------------------------------  184 (284)
T ss_dssp             HHHHHHHHHHHHTT-CTTSEEEEESSTTG---------------------------------------------------
T ss_pred             HHHHHHHHHHHHcC-CCCceEEEECcchh---------------------------------------------------
Confidence            99999999999998 88889999987431                                                   


Q ss_pred             CcccccccCCCcE---EEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEe
Q 016734          230 PVLVGVVRDGEQF---DFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMV  304 (384)
Q Consensus       230 ~i~~~~~~~~~~f---D~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~v  304 (384)
                          .+   .++|   |+|+|||||+...+  .+.+...   .+....+.||  ++.|+++++.   ..++.+||+.+++
T Consensus       185 ----~~---~~~f~~~D~IvsnPPyi~~~~--~l~~~v~---~ep~~al~~~~dgl~~~~~i~~---~~l~pgG~l~~e~  249 (284)
T 1nv8_A          185 ----PF---KEKFASIEMILSNPPYVKSSA--HLPKDVL---FEPPEALFGGEDGLDFYREFFG---RYDTSGKIVLMEI  249 (284)
T ss_dssp             ----GG---GGGTTTCCEEEECCCCBCGGG--SCTTSCC---CSCHHHHBCTTTSCHHHHHHHH---HCCCTTCEEEEEC
T ss_pred             ----hc---ccccCCCCEEEEcCCCCCccc--ccChhhc---cCcHHHhcCCCcHHHHHHHHHH---hcCCCCCEEEEEE
Confidence                01   1357   99999999998765  2222211   2233333444  3678877751   3445899999999


Q ss_pred             cCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEEe
Q 016734          305 GRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWS  343 (384)
Q Consensus       305 gk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AWs  343 (384)
                      | ..+.+++.+++++.     .+..+..|+ .|+++++.
T Consensus       250 ~-~~q~~~v~~~~~~~-----~~~~D~~g~-~R~~~~~~  281 (284)
T 1nv8_A          250 G-EDQVEELKKIVSDT-----VFLKDSAGK-YRFLLLNR  281 (284)
T ss_dssp             C-TTCHHHHTTTSTTC-----EEEECTTSS-EEEEEEEC
T ss_pred             C-chHHHHHHHHHHhC-----CeecccCCC-ceEEEEEE
Confidence            9 68899999888765     788899997 78877653

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.89  E-value=1.7e-23  Score=188.05  Aligned_cols=200  Identities=19%  Similarity=0.205  Sum_probs=130.5

Q ss_pred             EEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHH
Q 016734           77 WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (384)
Q Consensus        77 ~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~  156 (384)
                      |.+.+++++|+ |+++.++.++.+.+...        ....+|||+|||+|.++..++...++++++|+|+|+.+++.|+
T Consensus         1 f~~~~~~~~p~-~~~~~~~~~~~~~l~~~--------~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~   71 (215)
T 4dzr_A            1 FEVGPDCLIPR-PDTEVLVEEAIRFLKRM--------PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVAR   71 (215)
T ss_dssp             CBCSGGGGSCC-HHHHHHHHHHHHHHTTC--------CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------
T ss_pred             CcCCCCccCCC-ccHHHHHHHHHHHhhhc--------CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            46789999999 99999999999988531        2456999999999999999999888899999999999999999


Q ss_pred             HHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccc
Q 016734          157 KNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVV  236 (384)
Q Consensus       157 ~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~  236 (384)
                      +|+..++ +  +++++.+|..+                                                    .+....
T Consensus        72 ~~~~~~~-~--~~~~~~~d~~~----------------------------------------------------~~~~~~   96 (215)
T 4dzr_A           72 RNAERFG-A--VVDWAAADGIE----------------------------------------------------WLIERA   96 (215)
T ss_dssp             --------------CCHHHHHH----------------------------------------------------HHHHHH
T ss_pred             HHHHHhC-C--ceEEEEcchHh----------------------------------------------------hhhhhh
Confidence            9999886 4  57776665321                                                    010000


Q ss_pred             cCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeE-EEEEecCCCCHHHH
Q 016734          237 RDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRW-YTSMVGRKSNLKFL  313 (384)
Q Consensus       237 ~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w-~t~~vgk~~~l~~l  313 (384)
                      ...++||+|+|||||+.........+...  ..+......||  ++.++..+++++.++++.+|+ +.+.++ ..+.+.+
T Consensus        97 ~~~~~fD~i~~npp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~  173 (215)
T 4dzr_A           97 ERGRPWHAIVSNPPYIPTGEIDQLEPSVR--DYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG-HNQADEV  173 (215)
T ss_dssp             HTTCCBSEEEECCCCCC--------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT-TSCHHHH
T ss_pred             hccCcccEEEECCCCCCCccccccChhhh--ccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC-CccHHHH
Confidence            02378999999999998654332211110  01111222222  478889999999999999999 777777 7889999


Q ss_pred             HHHHH--HcCCeEEEEEEeeCCCeeEEEEEEec
Q 016734          314 ISKLR--KVGVTIVKTTEFVQGQTCRWGLAWSF  344 (384)
Q Consensus       314 ~~~L~--~~g~~~v~~~e~~qG~t~Rw~~AWsf  344 (384)
                      .+.++  +.|+..+.+.++..|+ .|++++|.-
T Consensus       174 ~~~l~~~~~gf~~~~~~~~~~~~-~r~~~~~~~  205 (215)
T 4dzr_A          174 ARLFAPWRERGFRVRKVKDLRGI-DRVIAVTRE  205 (215)
T ss_dssp             HHHTGGGGGGTEECCEEECTTSC-EEEEEEEEC
T ss_pred             HHHHHHhhcCCceEEEEEecCCC-EEEEEEEEc
Confidence            99999  9999999999999887 899998864

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.74  E-value=3.2e-17  Score=154.25  Aligned_cols=167  Identities=19%  Similarity=0.162  Sum_probs=112.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.++..++.+.+. +|+|+|+++.+++.|++|++.++ +.++++++++|..+                 
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~-~~~~v~~~~~D~~~-----------------  110 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQ-LEDQIEIIEYDLKK-----------------  110 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTT-CTTTEEEECSCGGG-----------------
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCC-CcccEEEEECcHHH-----------------
Confidence            568999999999999998877544 99999999999999999999998 88899999887432                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         +...+  ..++||+|+|||||+........+|......+..+   
T Consensus       111 -----------------------------------~~~~~--~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~---  150 (259)
T 3lpm_A          111 -----------------------------------ITDLI--PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHE---  150 (259)
T ss_dssp             -----------------------------------GGGTS--CTTCEEEEEECCCC------------------------
T ss_pred             -----------------------------------hhhhh--ccCCccEEEECCCCCCCccccCCCCchHHHhhhcc---
Confidence                                               00001  25789999999999986332222221111111111   


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEe--eCCCe-eEEEEEEecC
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF--VQGQT-CRWGLAWSFV  345 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~--~qG~t-~Rw~~AWsf~  345 (384)
                         ...-+..+++.+..+++.+|++.+.+. ..++.++.+.+++.|+...++...  ..|+. .|.++.+...
T Consensus       151 ---~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~  219 (259)
T 3lpm_A          151 ---VMCTLEDTIRVAASLLKQGGKANFVHR-PERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKD  219 (259)
T ss_dssp             -----HHHHHHHHHHHHHEEEEEEEEEEEC-TTTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEET
T ss_pred             ---ccCCHHHHHHHHHHHccCCcEEEEEEc-HHHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEeC
Confidence               123456788888899999999977665 789999999999999875554433  23443 4555555543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=7.9e-17  Score=152.49  Aligned_cols=171  Identities=15%  Similarity=0.138  Sum_probs=114.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH---CCCCCCceEEEEcCCCCCCCcccccccCCc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS---NPHISELIEIRKVDNSESTPSIQESLTGKS  191 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~---n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~  191 (384)
                      ...+|||||||+|++++.++.+.++.+|+|+|+++.+++.|++|++.   ++ +.++++++++|..+..+          
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~-l~~~v~~~~~D~~~~~~----------  104 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA-FSARIEVLEADVTLRAK----------  104 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT-TGGGEEEEECCTTCCHH----------
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC-CcceEEEEeCCHHHHhh----------
Confidence            34689999999999999999998889999999999999999999998   87 88889999998643000          


Q ss_pred             cccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcc-cccccCCCcEEEEEECCCcccchhhhccCCccccCCCc
Q 016734          192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL-VGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTP  270 (384)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~-~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~  270 (384)
                                                            ... ..+  ..++||+|+|||||+....  ...|....    
T Consensus       105 --------------------------------------~~~~~~~--~~~~fD~Vv~nPPy~~~~~--~~~~~~~~----  138 (260)
T 2ozv_A          105 --------------------------------------ARVEAGL--PDEHFHHVIMNPPYNDAGD--RRTPDALK----  138 (260)
T ss_dssp             --------------------------------------HHHHTTC--CTTCEEEEEECCCC-------------------
T ss_pred             --------------------------------------hhhhhcc--CCCCcCEEEECCCCcCCCC--CCCcCHHH----
Confidence                                                  000 001  2468999999999998642  11121110    


Q ss_pred             ccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeC--CCe-eEEEEEEecCC
Q 016734          271 EEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQT-CRWGLAWSFVP  346 (384)
Q Consensus       271 ~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~q--G~t-~Rw~~AWsf~~  346 (384)
                       .+...++ ......+++.+..+++.+|++.+.++ ..++.++.+.+++. +..+++..+..  ++. .|.++.+....
T Consensus       139 -~~a~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~l~~~-~~~~~i~~v~~~~~~~~~~~lv~~~k~~  213 (260)
T 2ozv_A          139 -AEAHAMT-EGLFEDWIRTASAIMVSGGQLSLISR-PQSVAEIIAACGSR-FGGLEITLIHPRPGEDAVRMLVTAIKGS  213 (260)
T ss_dssp             ----------CCHHHHHHHHHHHEEEEEEEEEEEC-GGGHHHHHHHHTTT-EEEEEEEEEESSTTSCCCEEEEEEEETC
T ss_pred             -HHHhhcC-cCCHHHHHHHHHHHcCCCCEEEEEEc-HHHHHHHHHHHHhc-CCceEEEEEcCCCCCCceEEEEEEEeCC
Confidence             1111111 11256678888889999999988777 67899999999875 76666665543  332 55566666644

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.70  E-value=6.2e-16  Score=136.89  Aligned_cols=152  Identities=18%  Similarity=0.185  Sum_probs=113.4

Q ss_pred             CCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH
Q 016734           82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (384)
Q Consensus        82 ~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~  161 (384)
                      .+++|+ |+++.++.++... .          ....+|||+|||+|.++..++...   +++|+|+|+.+++.       
T Consensus         2 ~v~~P~-~~~~~l~~~l~~~-~----------~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------   59 (170)
T 3q87_B            2 DWYEPG-EDTYTLMDALERE-G----------LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------   59 (170)
T ss_dssp             CSCCCC-HHHHHHHHHHHHH-T----------CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------
T ss_pred             cccCcC-ccHHHHHHHHHhh-c----------CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------
Confidence            579999 9999988885432 1          123589999999999998888665   99999999999987       


Q ss_pred             CCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCc
Q 016734          162 NPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQ  241 (384)
Q Consensus       162 n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~  241 (384)
                      .    .+++++.+|..+                                                       .+  .+++
T Consensus        60 ~----~~~~~~~~d~~~-------------------------------------------------------~~--~~~~   78 (170)
T 3q87_B           60 H----RGGNLVRADLLC-------------------------------------------------------SI--NQES   78 (170)
T ss_dssp             C----SSSCEEECSTTT-------------------------------------------------------TB--CGGG
T ss_pred             c----cCCeEEECChhh-------------------------------------------------------hc--ccCC
Confidence            1    247788887431                                                       01  1368


Q ss_pred             EEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHH
Q 016734          242 FDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK  319 (384)
Q Consensus       242 fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~  319 (384)
                      ||+|+|||||+...+...               ..||  ...++.++++..     ++|++........+.+++.+.|++
T Consensus        79 fD~i~~n~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l-----pgG~l~~~~~~~~~~~~l~~~l~~  138 (170)
T 3q87_B           79 VDVVVFNPPYVPDTDDPI---------------IGGGYLGREVIDRFVDAV-----TVGMLYLLVIEANRPKEVLARLEE  138 (170)
T ss_dssp             CSEEEECCCCBTTCCCTT---------------TBCCGGGCHHHHHHHHHC-----CSSEEEEEEEGGGCHHHHHHHHHH
T ss_pred             CCEEEECCCCccCCcccc---------------ccCCcchHHHHHHHHhhC-----CCCEEEEEEecCCCHHHHHHHHHH
Confidence            999999999997643211               1222  356777776665     677776655557899999999999


Q ss_pred             cCCeEEEEEEeeCCCeeE
Q 016734          320 VGVTIVKTTEFVQGQTCR  337 (384)
Q Consensus       320 ~g~~~v~~~e~~qG~t~R  337 (384)
                      .|+..+.+.+...|. .|
T Consensus       139 ~gf~~~~~~~~~~~~-e~  155 (170)
T 3q87_B          139 RGYGTRILKVRKILG-ET  155 (170)
T ss_dssp             TTCEEEEEEEEECSS-SE
T ss_pred             CCCcEEEEEeeccCC-ce
Confidence            999988988888886 44

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.63  E-value=6.2e-15  Score=139.75  Aligned_cols=171  Identities=14%  Similarity=0.092  Sum_probs=129.7

Q ss_pred             HhhccCCcEEEecCC--CccCCCcCHHHHHHHHHHH------------hccCCCCCCCCCCCCCeEEEECCcccHHHHHH
Q 016734           68 LLLHDHGLNWWIPDG--QLCPTVPNRSNYIHWIEDL------------LSSNIIPTTSRNGDKVKGFDIGTGANCIYPLL  133 (384)
Q Consensus        68 lL~~~fgl~~~vp~~--~LiPrvP~r~~yi~~i~dl------------l~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~L  133 (384)
                      ++-.+||..+.++.+  +++|+ |.++.|+..+...            +....      -....+|||+|||+|.++..+
T Consensus        58 i~g~~~g~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~VLDiG~G~G~~~~~l  130 (277)
T 1o54_A           58 VFEKGPGEIIRTSAGKKGYILI-PSLIDEIMNMKRRTQIVYPKDSSFIAMMLD------VKEGDRIIDTGVGSGAMCAVL  130 (277)
T ss_dssp             HTTSCTTCEEECTTCCEEEEEC-CCHHHHHHTCCC-CCCCCHHHHHHHHHHTT------CCTTCEEEEECCTTSHHHHHH
T ss_pred             hcCCCCCcEEEEcCCcEEEEeC-CCHHHHHhhccccCCccCHHHHHHHHHHhC------CCCCCEEEEECCcCCHHHHHH
Confidence            455689999999998  89999 9999887532211            11100      123458999999999999999


Q ss_pred             Hhh-ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCC
Q 016734          134 GAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSS  212 (384)
Q Consensus       134 a~~-~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (384)
                      +.. .++.+++++|+++.+++.|++|++.++ +.+++.++.+|..+                                  
T Consensus       131 a~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~----------------------------------  175 (277)
T 1o54_A          131 ARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISE----------------------------------  175 (277)
T ss_dssp             HHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGG----------------------------------
T ss_pred             HHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCHHH----------------------------------
Confidence            887 567899999999999999999999987 76789988776321                                  


Q ss_pred             CCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHH
Q 016734          213 SSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVA  292 (384)
Q Consensus       213 ~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~  292 (384)
                                           .+  ..+.||+|+||||..                               ..++++...
T Consensus       176 ---------------------~~--~~~~~D~V~~~~~~~-------------------------------~~~l~~~~~  201 (277)
T 1o54_A          176 ---------------------GF--DEKDVDALFLDVPDP-------------------------------WNYIDKCWE  201 (277)
T ss_dssp             ---------------------CC--SCCSEEEEEECCSCG-------------------------------GGTHHHHHH
T ss_pred             ---------------------cc--cCCccCEEEECCcCH-------------------------------HHHHHHHHH
Confidence                                 01  235799999998732                               122344556


Q ss_pred             hhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCC
Q 016734          293 LKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ  334 (384)
Q Consensus       293 l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~  334 (384)
                      +++.+|++.+......++..+.+.|++.|+..+++.++..+.
T Consensus       202 ~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~  243 (277)
T 1o54_A          202 ALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRP  243 (277)
T ss_dssp             HEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCCCCC
T ss_pred             HcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEEEeeee
Confidence            778899988888766788899999999999988888776443

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.62  E-value=2.3e-15  Score=132.64  Aligned_cols=95  Identities=17%  Similarity=0.071  Sum_probs=80.3

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      .+++|+.+.++++. .|+ |.+..++.++.+.+...        ....+|||+|||+|.++..++. .+..+|+|+|+|+
T Consensus         9 g~~~~~~~~~~~~~-~~r-p~~~~~~~~~~~~l~~~--------~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~   77 (187)
T 2fhp_A            9 GEYGGRRLKALDGD-NTR-PTTDKVKESIFNMIGPY--------FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNF   77 (187)
T ss_dssp             STTTTCBCCCCCCC-SSC-CCCHHHHHHHHHHHCSC--------CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCH
T ss_pred             ccccCccccCCCCC-CcC-cCHHHHHHHHHHHHHhh--------cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCH
Confidence            46789999999887 888 99999999999888531        1346899999999999887765 4557999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+++.|++|+..++ +.++++++.+|.
T Consensus        78 ~~~~~a~~~~~~~~-~~~~~~~~~~d~  103 (187)
T 2fhp_A           78 AALKVIKENIAITK-EPEKFEVRKMDA  103 (187)
T ss_dssp             HHHHHHHHHHHHHT-CGGGEEEEESCH
T ss_pred             HHHHHHHHHHHHhC-CCcceEEEECcH
Confidence            99999999999997 777899998874

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.59  E-value=1.3e-14  Score=129.37  Aligned_cols=94  Identities=9%  Similarity=0.019  Sum_probs=73.0

Q ss_pred             ccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      .+.|..+.+|+  ..+| |.+..+.+++.+.+....      .....+|||+|||+|.++..++.. ...+|+|+|+|+.
T Consensus         9 ~~~g~~l~~~~--~~~r-p~~~~~~~~l~~~l~~~~------~~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~   78 (189)
T 3p9n_A            9 VAGGRRIAVPP--RGTR-PTTDRVRESLFNIVTARR------DLTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQR   78 (189)
T ss_dssp             TTTTCEEECCS--CCC----CHHHHHHHHHHHHHHS------CCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHH
T ss_pred             ccCCcEecCCC--CCCc-cCcHHHHHHHHHHHHhcc------CCCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHH
Confidence            46788999998  6777 888888888887775310      013468999999999998866653 4568999999999


Q ss_pred             HHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          151 ALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       151 al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +++.|++|++.++ + ++++++++|.
T Consensus        79 ~~~~a~~~~~~~~-~-~~v~~~~~d~  102 (189)
T 3p9n_A           79 SAAVIARNIEALG-L-SGATLRRGAV  102 (189)
T ss_dssp             HHHHHHHHHHHHT-C-SCEEEEESCH
T ss_pred             HHHHHHHHHHHcC-C-CceEEEEccH
Confidence            9999999999997 6 6799999874

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.58  E-value=6.5e-14  Score=139.45  Aligned_cols=157  Identities=14%  Similarity=0.110  Sum_probs=113.8

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~  168 (384)
                      |-++.+...+..+. .         ....+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|++|++.++ +.++
T Consensus       201 ~l~~~la~~l~~~~-~---------~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g-l~~~  269 (373)
T 3tm4_A          201 HLKASIANAMIELA-E---------LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG-VLDK  269 (373)
T ss_dssp             CCCHHHHHHHHHHH-T---------CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT-CGGG
T ss_pred             CccHHHHHHHHHhh-c---------CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC-CCCc
Confidence            34566666666655 2         13458999999999999888876554589999999999999999999998 8788


Q ss_pred             eEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEEC
Q 016734          169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN  248 (384)
Q Consensus       169 I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cN  248 (384)
                      |+++++|..+                                                        +....++||+|+||
T Consensus       270 i~~~~~D~~~--------------------------------------------------------~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          270 IKFIQGDATQ--------------------------------------------------------LSQYVDSVDFAISN  293 (373)
T ss_dssp             CEEEECCGGG--------------------------------------------------------GGGTCSCEEEEEEE
T ss_pred             eEEEECChhh--------------------------------------------------------CCcccCCcCEEEEC
Confidence            9999987431                                                        00124689999999


Q ss_pred             CCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEE
Q 016734          249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT  328 (384)
Q Consensus       249 PPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~  328 (384)
                      |||......            ..+      -..++..++++..+++  ++|......   +...+.+.+.+.|+...+..
T Consensus       294 pPyg~r~~~------------~~~------~~~ly~~~~~~l~r~l--~g~~~~i~~---~~~~~~~~~~~~G~~~~~~~  350 (373)
T 3tm4_A          294 LPYGLKIGK------------KSM------IPDLYMKFFNELAKVL--EKRGVFITT---EKKAIEEAIAENGFEIIHHR  350 (373)
T ss_dssp             CCCC------------------CC------HHHHHHHHHHHHHHHE--EEEEEEEES---CHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCCcccCc------------chh------HHHHHHHHHHHHHHHc--CCeEEEEEC---CHHHHHHHHHHcCCEEEEEE
Confidence            999753211            110      1345677888877766  455444443   66778888999999988888


Q ss_pred             EeeCCCe
Q 016734          329 EFVQGQT  335 (384)
Q Consensus       329 e~~qG~t  335 (384)
                      .+..|..
T Consensus       351 ~~~nG~l  357 (373)
T 3tm4_A          351 VIGHGGL  357 (373)
T ss_dssp             EEEETTE
T ss_pred             EEEcCCE
Confidence            8988874

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.56  E-value=3.8e-14  Score=129.03  Aligned_cols=165  Identities=12%  Similarity=0.124  Sum_probs=115.5

Q ss_pred             cCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHH
Q 016734           80 PDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (384)
Q Consensus        80 p~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni  159 (384)
                      .+.+++|+ |++. ...|. +++..          ...+|||||||+|+++..++...++++++|+|+++.+++.|++|+
T Consensus        19 ~~~~~~~~-p~~~-~~~~~-~~f~~----------~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~   85 (214)
T 1yzh_A           19 NPQYVVLN-PLEA-KAKWR-DLFGN----------DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKV   85 (214)
T ss_dssp             CTTTEECC-GGGT-TTTHH-HHHTS----------CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEecC-hhhc-ccCHH-HHcCC----------CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHH
Confidence            35678888 7752 23444 33321          345899999999999999999989999999999999999999999


Q ss_pred             HHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCC
Q 016734          160 KSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDG  239 (384)
Q Consensus       160 ~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~  239 (384)
                      ..++ + +++.++.+|..+                                                    +...+  ..
T Consensus        86 ~~~~-~-~~v~~~~~d~~~----------------------------------------------------~~~~~--~~  109 (214)
T 1yzh_A           86 LEVG-V-PNIKLLWVDGSD----------------------------------------------------LTDYF--ED  109 (214)
T ss_dssp             HHHC-C-SSEEEEECCSSC----------------------------------------------------GGGTS--CT
T ss_pred             HHcC-C-CCEEEEeCCHHH----------------------------------------------------HHhhc--CC
Confidence            9987 6 579999887532                                                    00001  24


Q ss_pred             CcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHH
Q 016734          240 EQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK  319 (384)
Q Consensus       240 ~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~  319 (384)
                      ++||+|+||+|--...  ....+.                ......++++...+++.+|++.+..........+.+.+.+
T Consensus       110 ~~~D~i~~~~~~~~~~--~~~~~~----------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  171 (214)
T 1yzh_A          110 GEIDRLYLNFSDPWPK--KRHEKR----------------RLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQ  171 (214)
T ss_dssp             TCCSEEEEESCCCCCS--GGGGGG----------------STTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccc--cchhhh----------------ccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence            5799999998732100  000000                0124556677777888999987777544567888899999


Q ss_pred             cCCeEEEEEEee
Q 016734          320 VGVTIVKTTEFV  331 (384)
Q Consensus       320 ~g~~~v~~~e~~  331 (384)
                      .|+..+.+..+.
T Consensus       172 ~g~~~~~~~~d~  183 (214)
T 1yzh_A          172 YGMKLNGVWLDL  183 (214)
T ss_dssp             HTCEEEEEESSG
T ss_pred             CCCeeeeccccc
Confidence            999876665443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.56  E-value=1e-13  Score=136.34  Aligned_cols=163  Identities=16%  Similarity=0.108  Sum_probs=116.7

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |-++.+...+..+...         ....++||+|||+|.+.+.++... ++.+++|+|+|+.+++.|++|++.++ +. 
T Consensus       186 ~l~~~la~~l~~~~~~---------~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g-~~-  254 (354)
T 3tma_A          186 SLTPVLAQALLRLADA---------RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG-LS-  254 (354)
T ss_dssp             SCCHHHHHHHHHHTTC---------CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT-CT-
T ss_pred             CcCHHHHHHHHHHhCC---------CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC-CC-
Confidence            5556666666665532         234589999999999999988877 78899999999999999999999998 76 


Q ss_pred             ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734          168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC  247 (384)
Q Consensus       168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c  247 (384)
                      +|+++++|..+                                                        +....+.||+|+|
T Consensus       255 ~i~~~~~D~~~--------------------------------------------------------~~~~~~~~D~Ii~  278 (354)
T 3tma_A          255 WIRFLRADARH--------------------------------------------------------LPRFFPEVDRILA  278 (354)
T ss_dssp             TCEEEECCGGG--------------------------------------------------------GGGTCCCCSEEEE
T ss_pred             ceEEEeCChhh--------------------------------------------------------CccccCCCCEEEE
Confidence            89999987432                                                        0012345899999


Q ss_pred             CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEE
Q 016734          248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKT  327 (384)
Q Consensus       248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~  327 (384)
                      ||||......            ..      .-..++..++++..++++.+|.+....+   +...+.+.++ .|+...+.
T Consensus       279 npPyg~r~~~------------~~------~~~~~~~~~~~~~~~~LkpgG~l~i~t~---~~~~~~~~~~-~g~~~~~~  336 (354)
T 3tma_A          279 NPPHGLRLGR------------KE------GLFHLYWDFLRGALALLPPGGRVALLTL---RPALLKRALP-PGFALRHA  336 (354)
T ss_dssp             CCCSCC----------------CH------HHHHHHHHHHHHHHHTSCTTCEEEEEES---CHHHHHHHCC-TTEEEEEE
T ss_pred             CCCCcCccCC------------cc------cHHHHHHHHHHHHHHhcCCCcEEEEEeC---CHHHHHHHhh-cCcEEEEE
Confidence            9999643210            00      0245678888888888888777766655   3333444455 88887788


Q ss_pred             EEeeCCCeeEEEE
Q 016734          328 TEFVQGQTCRWGL  340 (384)
Q Consensus       328 ~e~~qG~t~Rw~~  340 (384)
                      ..+..|...+.++
T Consensus       337 ~~l~~g~l~~~i~  349 (354)
T 3tma_A          337 RVVEQGGVYPRVF  349 (354)
T ss_dssp             EECCBTTBCCEEE
T ss_pred             EEEEeCCEEEEEE
Confidence            8888887655433

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.55  E-value=2.4e-13  Score=119.35  Aligned_cols=161  Identities=20%  Similarity=0.214  Sum_probs=116.4

Q ss_pred             EEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHH
Q 016734           76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA  155 (384)
Q Consensus        76 ~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A  155 (384)
                      .+..+.+.+.|+..+  ....++.+.+..         ....+|||+|||+|.++..++..  +.+++|+|+++.+++.|
T Consensus        24 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~---------~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a   90 (194)
T 1dus_A           24 KFKTDSGVFSYGKVD--KGTKILVENVVV---------DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLA   90 (194)
T ss_dssp             EEEEETTSTTTTSCC--HHHHHHHHHCCC---------CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHH
T ss_pred             EEEeCCCcCCccccc--hHHHHHHHHccc---------CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHH
Confidence            356678888887332  233445555432         13468999999999998888766  78999999999999999


Q ss_pred             HHHHHHCCCCCC-ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccc
Q 016734          156 EKNVKSNPHISE-LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVG  234 (384)
Q Consensus       156 ~~Ni~~n~~l~~-~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~  234 (384)
                      ++|+..++ +.+ ++.++.+|..+                                                    .+  
T Consensus        91 ~~~~~~~~-~~~~~~~~~~~d~~~----------------------------------------------------~~--  115 (194)
T 1dus_A           91 KENIKLNN-LDNYDIRVVHSDLYE----------------------------------------------------NV--  115 (194)
T ss_dssp             HHHHHHTT-CTTSCEEEEECSTTT----------------------------------------------------TC--
T ss_pred             HHHHHHcC-CCccceEEEECchhc----------------------------------------------------cc--
Confidence            99999987 654 69998887431                                                    00  


Q ss_pred             cccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHH
Q 016734          235 VVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI  314 (384)
Q Consensus       235 ~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~  314 (384)
                         ..++||+|+|||||+..                         ......++++..++++.+|++............+.
T Consensus       116 ---~~~~~D~v~~~~~~~~~-------------------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~  167 (194)
T 1dus_A          116 ---KDRKYNKIITNPPIRAG-------------------------KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLA  167 (194)
T ss_dssp             ---TTSCEEEEEECCCSTTC-------------------------HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHH
T ss_pred             ---ccCCceEEEECCCcccc-------------------------hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHH
Confidence               14579999999999742                         11245566777778888888877666566677788


Q ss_pred             HHHHHcCCeEEEEEEeeCC
Q 016734          315 SKLRKVGVTIVKTTEFVQG  333 (384)
Q Consensus       315 ~~L~~~g~~~v~~~e~~qG  333 (384)
                      +.|++. +..++++....|
T Consensus       168 ~~l~~~-~~~~~~~~~~~~  185 (194)
T 1dus_A          168 KYMKDV-FGNVETVTIKGG  185 (194)
T ss_dssp             HHHHHH-HSCCEEEEEETT
T ss_pred             HHHHHH-hcceEEEecCCc
Confidence            888887 556676665544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.52  E-value=2.2e-13  Score=136.08  Aligned_cols=153  Identities=15%  Similarity=0.095  Sum_probs=104.2

Q ss_pred             CCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        73 fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      .++.+...++++.+.-....  ..++.+.+..         ....+|||+|||+|.++..++...|+.+|+|+|+|+.++
T Consensus       191 ~~~~~~~~pg~Fs~~~~d~~--~~~ll~~l~~---------~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al  259 (375)
T 4dcm_A          191 TDWTIHNHANVFSRTGLDIG--ARFFMQHLPE---------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV  259 (375)
T ss_dssp             TTEEEEECTTCTTCSSCCHH--HHHHHHTCCC---------SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHH
T ss_pred             CceEEEeCCCcccCCcccHH--HHHHHHhCcc---------cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHH
Confidence            45667777788877422211  1122333321         133689999999999999999998899999999999999


Q ss_pred             HHHHHHHHHCCCCCC--ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCC
Q 016734          153 EWAEKNVKSNPHISE--LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPP  230 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~--~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  230 (384)
                      +.|++|++.|+ +.+  ++.++.+|..+                                                    
T Consensus       260 ~~Ar~n~~~ng-l~~~~~v~~~~~D~~~----------------------------------------------------  286 (375)
T 4dcm_A          260 ASSRLNVETNM-PEALDRCEFMINNALS----------------------------------------------------  286 (375)
T ss_dssp             HHHHHHHHHHC-GGGGGGEEEEECSTTT----------------------------------------------------
T ss_pred             HHHHHHHHHcC-CCcCceEEEEechhhc----------------------------------------------------
Confidence            99999999997 664  47778777431                                                    


Q ss_pred             cccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCH
Q 016734          231 VLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNL  310 (384)
Q Consensus       231 i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l  310 (384)
                         .+  ..++||+|+|||||+......           .          ....++++++.++++.+|.+.+...+....
T Consensus       287 ---~~--~~~~fD~Ii~nppfh~~~~~~-----------~----------~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~  340 (375)
T 4dcm_A          287 ---GV--EPFRFNAVLCNPPFHQQHALT-----------D----------NVAWEMFHHARRCLKINGELYIVANRHLDY  340 (375)
T ss_dssp             ---TC--CTTCEEEEEECCCC------------------C----------CHHHHHHHHHHHHEEEEEEEEEEEETTSCH
T ss_pred             ---cC--CCCCeeEEEECCCcccCcccC-----------H----------HHHHHHHHHHHHhCCCCcEEEEEEECCcCH
Confidence               11  246899999999998632110           0          113467788888889999887766655555


Q ss_pred             HHHHH
Q 016734          311 KFLIS  315 (384)
Q Consensus       311 ~~l~~  315 (384)
                      ....+
T Consensus       341 ~~~l~  345 (375)
T 4dcm_A          341 FHKLK  345 (375)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.52  E-value=2.3e-13  Score=138.17  Aligned_cols=91  Identities=13%  Similarity=0.105  Sum_probs=78.0

Q ss_pred             CcEEEecCCCccCCC-cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           74 GLNWWIPDGQLCPTV-PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        74 gl~~~vp~~~LiPrv-P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      |++|.++++.++|.. +.++.++.++.+.+..         ....+|||+|||+|.+++.|+..  ..+|+|+|+|+.|+
T Consensus       253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~---------~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al  321 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDV---------QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALV  321 (433)
T ss_dssp             TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTC---------CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHH
T ss_pred             CEEEEECcccccccCHHHHHHHHHHHHHhhcC---------CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHH
Confidence            899999999999952 4588889998888753         13458999999999999999876  67999999999999


Q ss_pred             HHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          153 EWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      +.|++|++.|+ +. ++.++.+|..
T Consensus       322 ~~A~~n~~~~~-~~-~v~f~~~d~~  344 (433)
T 1uwv_A          322 EKGQQNARLNG-LQ-NVTFYHENLE  344 (433)
T ss_dssp             HHHHHHHHHTT-CC-SEEEEECCTT
T ss_pred             HHHHHHHHHcC-CC-ceEEEECCHH
Confidence            99999999997 65 7999998854

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.51  E-value=4.2e-13  Score=134.40  Aligned_cols=152  Identities=14%  Similarity=0.179  Sum_probs=112.7

Q ss_pred             cEEEecCCCcc---CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           75 LNWWIPDGQLC---PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        75 l~~~vp~~~Li---PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      +.|...++++.   +. |.+..++.++.+.+...       .....+|||+|||+|.++..++..  +++|+|+|+|+.+
T Consensus       198 ~~~~~~pgvFs~~~~d-~~t~~ll~~l~~~l~~~-------~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~a  267 (381)
T 3dmg_A          198 YTFHHLPGVFSAGKVD-PASLLLLEALQERLGPE-------GVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLAS  267 (381)
T ss_dssp             EEEEECTTCTTTTSCC-HHHHHHHHHHHHHHCTT-------TTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHH
T ss_pred             EEEEeCCCceeCCCCC-HHHHHHHHHHHHhhccc-------CCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHH
Confidence            35777888888   55 77888888888776421       123468999999999999888865  6799999999999


Q ss_pred             HHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCc
Q 016734          152 LEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPV  231 (384)
Q Consensus       152 l~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i  231 (384)
                      ++.|++|++.|+ +.  ++++.+|..+                                                    .
T Consensus       268 l~~A~~n~~~~~-~~--v~~~~~D~~~----------------------------------------------------~  292 (381)
T 3dmg_A          268 VLSLQKGLEANA-LK--AQALHSDVDE----------------------------------------------------A  292 (381)
T ss_dssp             HHHHHHHHHHTT-CC--CEEEECSTTT----------------------------------------------------T
T ss_pred             HHHHHHHHHHcC-CC--eEEEEcchhh----------------------------------------------------c
Confidence            999999999997 54  8888887532                                                    0


Q ss_pred             ccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHH
Q 016734          232 LVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLK  311 (384)
Q Consensus       232 ~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~  311 (384)
                          ....++||+|+|||||+.....                     .......+++++.++++.+|++...........
T Consensus       293 ----~~~~~~fD~Ii~npp~~~~~~~---------------------~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~  347 (381)
T 3dmg_A          293 ----LTEEARFDIIVTNPPFHVGGAV---------------------ILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYE  347 (381)
T ss_dssp             ----SCTTCCEEEEEECCCCCTTCSS---------------------CCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHH
T ss_pred             ----cccCCCeEEEEECCchhhcccc---------------------cHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChH
Confidence                0124689999999999752110                     123466788888889999999877776555555


Q ss_pred             HHHHH
Q 016734          312 FLISK  316 (384)
Q Consensus       312 ~l~~~  316 (384)
                      .+++.
T Consensus       348 ~~l~~  352 (381)
T 3dmg_A          348 PLLEE  352 (381)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.51  E-value=3.5e-13  Score=132.58  Aligned_cols=173  Identities=13%  Similarity=0.149  Sum_probs=118.7

Q ss_pred             cCCcEEEecCCCccCC--CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           72 DHGLNWWIPDGQLCPT--VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPr--vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ..|+.|.++....-.+  .|++.....|+.+++...        ....+|||+|||+|.+++.++..  +++|+|+|+|+
T Consensus       116 e~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~~--------~~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~  185 (332)
T 2igt_A          116 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETA--------DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASK  185 (332)
T ss_dssp             ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHS--------SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCH
T ss_pred             ECCEEEEEecCccccceechHHHHHHHHHHHHHHhc--------CCCCcEEEcccccCHHHHHHHHc--CCEEEEEECCH
Confidence            3577787777655555  577777778888877421        13458999999999999888764  55999999999


Q ss_pred             HHHHHHHHHHHHCCCCCC-ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISE-LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG  228 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~-~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  228 (384)
                      .+++.|++|++.|+ +.+ ++.++.+|..+                                                  
T Consensus       186 ~al~~a~~n~~~~g-l~~~~v~~i~~D~~~--------------------------------------------------  214 (332)
T 2igt_A          186 KAIGWAKENQVLAG-LEQAPIRWICEDAMK--------------------------------------------------  214 (332)
T ss_dssp             HHHHHHHHHHHHHT-CTTSCEEEECSCHHH--------------------------------------------------
T ss_pred             HHHHHHHHHHHHcC-CCccceEEEECcHHH--------------------------------------------------
Confidence            99999999999998 776 59998877321                                                  


Q ss_pred             CCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCC
Q 016734          229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS  308 (384)
Q Consensus       229 ~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~  308 (384)
                        ++.......++||+|+||||||......             ++.   .....+..+++++..+++.+|++.+......
T Consensus       215 --~l~~~~~~~~~fD~Ii~dPP~~~~~~~~-------------~~~---~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~  276 (332)
T 2igt_A          215 --FIQREERRGSTYDIILTDPPKFGRGTHG-------------EVW---QLFDHLPLMLDICREILSPKALGLVLTAYSI  276 (332)
T ss_dssp             --HHHHHHHHTCCBSEEEECCCSEEECTTC-------------CEE---EHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred             --HHHHHHhcCCCceEEEECCccccCCchH-------------HHH---HHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence              1111111146899999999988643110             000   0244567788888888898888655554222


Q ss_pred             --CHHHHHHHHH----HcCCe
Q 016734          309 --NLKFLISKLR----KVGVT  323 (384)
Q Consensus       309 --~l~~l~~~L~----~~g~~  323 (384)
                        ....+.+.++    +.|..
T Consensus       277 ~~~~~~~~~~l~~a~~~~g~~  297 (332)
T 2igt_A          277 RASFYSMHELMRETMRGAGGV  297 (332)
T ss_dssp             TSCHHHHHHHHHHHTTTSCSE
T ss_pred             CCCHHHHHHHHHHHHHHcCCe
Confidence              3455555555    56654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.49  E-value=1.9e-13  Score=127.99  Aligned_cols=125  Identities=19%  Similarity=0.196  Sum_probs=98.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|+|||||+|++++.++...+..+|+|+|+++.+++.|++|++.|+ +.++|+++.+|..+                 
T Consensus        16 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~i~~~~~d~l~-----------------   77 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG-LKEKIQVRLANGLA-----------------   77 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGG-----------------
T ss_pred             CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECchhh-----------------
Confidence            358999999999999999988788899999999999999999999998 88899999987431                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                            ++. ..+.||+|+..          +                
T Consensus        78 --------------------------------------~l~-~~~~~D~Ivia----------G----------------   92 (225)
T 3kr9_A           78 --------------------------------------AFE-ETDQVSVITIA----------G----------------   92 (225)
T ss_dssp             --------------------------------------GCC-GGGCCCEEEEE----------E----------------
T ss_pred             --------------------------------------hcc-cCcCCCEEEEc----------C----------------
Confidence                                                  111 12258876631          0                


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEE
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKT  327 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~  327 (384)
                      .||  ..+.+|++++...+..++|+..  ........+.+.|.+.||..+..
T Consensus        93 ~Gg--~~i~~Il~~~~~~L~~~~~lVl--q~~~~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           93 MGG--RLIARILEEGLGKLANVERLIL--QPNNREDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             ECH--HHHHHHHHHTGGGCTTCCEEEE--EESSCHHHHHHHHHHTTEEEEEE
T ss_pred             CCh--HHHHHHHHHHHHHhCCCCEEEE--ECCCCHHHHHHHHHHCCCEEEEE
Confidence            133  3488899999888888899643  33578999999999999865443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.48  E-value=7e-13  Score=119.37  Aligned_cols=128  Identities=14%  Similarity=0.043  Sum_probs=101.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||||||+|.++..++...+..+++|+|+|+.+++.|++|++.++ + ++++++.+|..+                
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~----------------  101 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV-A-RNVTLVEAFAPE----------------  101 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT-C-TTEEEEECCTTT----------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEeCChhh----------------
Confidence            3468999999999999999988888999999999999999999999987 6 679999887532                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          .+    ...+.||+|+|++++..                     
T Consensus       102 ------------------------------------~~----~~~~~~D~i~~~~~~~~---------------------  120 (204)
T 3e05_A          102 ------------------------------------GL----DDLPDPDRVFIGGSGGM---------------------  120 (204)
T ss_dssp             ------------------------------------TC----TTSCCCSEEEESCCTTC---------------------
T ss_pred             ------------------------------------hh----hcCCCCCEEEECCCCcC---------------------
Confidence                                                00    01256999999986630                     


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEe
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~  330 (384)
                              ...++++..++++++|++.+......+...+.+.|++.|+ .+++.+.
T Consensus       121 --------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~  167 (204)
T 3e05_A          121 --------LEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY-MVEVACV  167 (204)
T ss_dssp             --------HHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             --------HHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC-ceeEEEE
Confidence                    3456677777888888887665556788999999999998 6666554

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.48  E-value=5.5e-13  Score=126.22  Aligned_cols=125  Identities=17%  Similarity=0.160  Sum_probs=98.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|+|++.|+...+..+|+|+|+|+.+++.|++|++.|+ +.++|+++.+|..+                 
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~I~v~~gD~l~-----------------   83 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG-LTEQIDVRKGNGLA-----------------   83 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGG-----------------
T ss_pred             CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEecchhh-----------------
Confidence            358999999999999999988777799999999999999999999998 88899999988432                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                            .+. .++.||+|+.-          +                
T Consensus        84 --------------------------------------~~~-~~~~~D~Ivia----------g----------------   98 (244)
T 3gnl_A           84 --------------------------------------VIE-KKDAIDTIVIA----------G----------------   98 (244)
T ss_dssp             --------------------------------------GCC-GGGCCCEEEEE----------E----------------
T ss_pred             --------------------------------------ccC-ccccccEEEEe----------C----------------
Confidence                                                  111 12358987630          0                


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEE
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKT  327 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~  327 (384)
                      .|  -..+.+|++++...++..+||  .+........+.+.|.+.||..+.-
T Consensus        99 mG--g~lI~~IL~~~~~~L~~~~~l--Ilq~~~~~~~lr~~L~~~Gf~i~~E  146 (244)
T 3gnl_A           99 MG--GTLIRTILEEGAAKLAGVTKL--ILQPNIAAWQLREWSEQNNWLITSE  146 (244)
T ss_dssp             EC--HHHHHHHHHHTGGGGTTCCEE--EEEESSCHHHHHHHHHHHTEEEEEE
T ss_pred             Cc--hHHHHHHHHHHHHHhCCCCEE--EEEcCCChHHHHHHHHHCCCEEEEE
Confidence            11  256888999998888888886  4444678999999999999875443

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.48  E-value=5.4e-14  Score=121.79  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=73.3

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      -.++|..+.++++   ++ |.+..+..++.+.+....       ....+|||+|||+|.++..++...  ..++|+|+|+
T Consensus         7 g~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~-------~~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~   73 (171)
T 1ws6_A            7 GKARGVALKVPAS---AR-PSPVRLRKALFDYLRLRY-------PRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDP   73 (171)
T ss_dssp             GGGTTCEECCCTT---CC-CCCHHHHHHHHHHHHHHC-------TTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCH
T ss_pred             cccCCeEecCCCC---CC-CCHHHHHHHHHHHHHhhc-------cCCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCH
Confidence            4678999999999   66 777788888877765310       134589999999999998888764  4599999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+++.|++|+..++ +  +++++.+|.
T Consensus        74 ~~~~~a~~~~~~~~-~--~~~~~~~d~   97 (171)
T 1ws6_A           74 EAVRLLKENVRRTG-L--GARVVALPV   97 (171)
T ss_dssp             HHHHHHHHHHHHHT-C--CCEEECSCH
T ss_pred             HHHHHHHHHHHHcC-C--ceEEEeccH
Confidence            99999999999887 5  688887763

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.47  E-value=8.9e-14  Score=129.66  Aligned_cols=48  Identities=25%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhh--ccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      ...+|||+|||+|.++..++..  .++++|+|+|+|+.+++.|++|+..+
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            3568999999999999999887  67789999999999999999999876

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.47  E-value=1.4e-12  Score=116.49  Aligned_cols=116  Identities=12%  Similarity=0.050  Sum_probs=86.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|.++..++... +..+++|+|+++.+++.|++|++.++ +.++++++.+|..+                
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~----------------   85 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-LIDRVTLIKDGHQN----------------   85 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT-CGGGEEEECSCGGG----------------
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCHHH----------------
Confidence            4589999999999999888875 56799999999999999999999997 77789999887421                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          + ...  ..++||+|+|||||++..+....      .       
T Consensus        86 ------------------------------------~-~~~--~~~~fD~v~~~~~~~~~~~~~~~------~-------  113 (197)
T 3eey_A           86 ------------------------------------M-DKY--IDCPVKAVMFNLGYLPSGDHSIS------T-------  113 (197)
T ss_dssp             ------------------------------------G-GGT--CCSCEEEEEEEESBCTTSCTTCB------C-------
T ss_pred             ------------------------------------H-hhh--ccCCceEEEEcCCcccCcccccc------c-------
Confidence                                                0 001  24689999999999764321110      0       


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEe
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMV  304 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~v  304 (384)
                          ...-...++++..++++.+|++....
T Consensus       114 ----~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A          114 ----RPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             ----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----CcccHHHHHHHHHHhCcCCCEEEEEE
Confidence                11123456777888888888876554

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.46  E-value=1.8e-13  Score=120.18  Aligned_cols=87  Identities=10%  Similarity=-0.026  Sum_probs=61.3

Q ss_pred             EecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734           78 WIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (384)
Q Consensus        78 ~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~  157 (384)
                      ..|+ ..++| |.+..+..++.+.+...        ....+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++
T Consensus         4 ~~p~-~~~~r-p~~~~~~~~~~~~l~~~--------~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~   72 (177)
T 2esr_A            4 KTLD-GKITR-PTSDKVRGAIFNMIGPY--------FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQD   72 (177)
T ss_dssp             ----------------CHHHHHHHHCSC--------CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHH
T ss_pred             cCCC-CCCCC-cCHHHHHHHHHHHHHhh--------cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHH
Confidence            3444 46788 88888888988888531        13468999999999998888765 55799999999999999999


Q ss_pred             HHHHCCCCCCceEEEEcCC
Q 016734          158 NVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       158 Ni~~n~~l~~~I~~~~~d~  176 (384)
                      |++.++ +.+++.++.+|.
T Consensus        73 ~~~~~~-~~~~~~~~~~d~   90 (177)
T 2esr_A           73 NIIMTK-AENRFTLLKMEA   90 (177)
T ss_dssp             HHHTTT-CGGGEEEECSCH
T ss_pred             HHHHcC-CCCceEEEECcH
Confidence            999997 777899987763

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.45  E-value=1.4e-12  Score=116.86  Aligned_cols=59  Identities=24%  Similarity=0.275  Sum_probs=53.4

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .+|||||||+|.++..++.. ++.+++|+|+++.+++.|++++..++ +.+++.++.+|..
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~  103 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN-LNDRIQIVQGDVH  103 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECBTT
T ss_pred             CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc-ccCceEEEEcCHH
Confidence            39999999999999888877 78899999999999999999999997 7778999998753

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.45  E-value=1.5e-12  Score=122.32  Aligned_cols=124  Identities=16%  Similarity=0.211  Sum_probs=97.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|+|||||+|++++.++...+..+|+|+|+++.+++.|++|++.|+ +.++|+++.+|..+                 
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g-l~~~I~~~~gD~l~-----------------   83 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG-LTSKIDVRLANGLS-----------------   83 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGG-----------------
T ss_pred             CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhh-----------------
Confidence            458999999999999999988777899999999999999999999998 89999999998432                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEE-ECCCcccchhhhccCCccccCCCccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCI-CNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~-cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                            .+ ..++.||+|+ ||                          
T Consensus        84 --------------------------------------~~-~~~~~~D~IviaG--------------------------   98 (230)
T 3lec_A           84 --------------------------------------AF-EEADNIDTITICG--------------------------   98 (230)
T ss_dssp             --------------------------------------GC-CGGGCCCEEEEEE--------------------------
T ss_pred             --------------------------------------cc-ccccccCEEEEeC--------------------------
Confidence                                                  11 1223689765 32                          


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEE
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKT  327 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~  327 (384)
                       .||  ..+.+|+++....++.+++|  .+........+.+.|.+.||..+..
T Consensus        99 -mGg--~lI~~IL~~~~~~l~~~~~l--Ilqp~~~~~~lr~~L~~~Gf~i~~E  146 (230)
T 3lec_A           99 -MGG--RLIADILNNDIDKLQHVKTL--VLQPNNREDDLRKWLAANDFEIVAE  146 (230)
T ss_dssp             -ECH--HHHHHHHHHTGGGGTTCCEE--EEEESSCHHHHHHHHHHTTEEEEEE
T ss_pred             -Cch--HHHHHHHHHHHHHhCcCCEE--EEECCCChHHHHHHHHHCCCEEEEE
Confidence             112  46788888888888888875  3333567999999999999864443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.45  E-value=1.9e-12  Score=123.50  Aligned_cols=119  Identities=8%  Similarity=0.052  Sum_probs=90.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.+++.++..... +|+|+|+|+.|++.|++|++.|+ +.++++++.+|..+                 
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~-~~~~v~~~~~D~~~-----------------  186 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRD-----------------  186 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTT-----------------
T ss_pred             CCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECCHHH-----------------
Confidence            468999999999999988877555 89999999999999999999998 88889999887532                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         +.     ..++||+|+||||+..                      
T Consensus       187 -----------------------------------~~-----~~~~fD~Vi~~~p~~~----------------------  204 (278)
T 2frn_A          187 -----------------------------------FP-----GENIADRILMGYVVRT----------------------  204 (278)
T ss_dssp             -----------------------------------CC-----CCSCEEEEEECCCSSG----------------------
T ss_pred             -----------------------------------hc-----ccCCccEEEECCchhH----------------------
Confidence                                               00     1468999999999542                      


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEE-Eec-----CCCCHHHHHHHHHHcCCe
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTS-MVG-----RKSNLKFLISKLRKVGVT  323 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~-~vg-----k~~~l~~l~~~L~~~g~~  323 (384)
                              ..++.++.++++++|++.+ ..+     ....++.+.+.+++.|+.
T Consensus       205 --------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~  250 (278)
T 2frn_A          205 --------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD  250 (278)
T ss_dssp             --------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred             --------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCe
Confidence                    1122344456677776643 332     145688999999999985

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.45  E-value=3.6e-13  Score=122.27  Aligned_cols=93  Identities=11%  Similarity=-0.015  Sum_probs=68.6

Q ss_pred             ccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      .+.|..+.+|++ ..+| |.+..+.+.+.+.+...        ....+|||+|||+|.+++.++.+. ..+|+|+|+|+.
T Consensus        20 ~~~g~~l~~~~~-~~~r-p~~~~~~~~l~~~l~~~--------~~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~   88 (202)
T 2fpo_A           20 QWRGRKLPVPDS-PGLR-PTTDRVRETLFNWLAPV--------IVDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRA   88 (202)
T ss_dssp             GGTTCEEECCCC--------CHHHHHHHHHHHHHH--------HTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHH
T ss_pred             EEcCcEecCCCC-CCCC-CCHHHHHHHHHHHHHhh--------cCCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHH
Confidence            467888988886 4566 77777777777766431        024589999999999988766553 249999999999


Q ss_pred             HHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          151 ALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       151 al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +++.|++|++.++ + ++++++++|.
T Consensus        89 ~l~~a~~~~~~~~-~-~~v~~~~~D~  112 (202)
T 2fpo_A           89 VSQQLIKNLATLK-A-GNARVVNSNA  112 (202)
T ss_dssp             HHHHHHHHHHHTT-C-CSEEEECSCH
T ss_pred             HHHHHHHHHHHcC-C-CcEEEEECCH
Confidence            9999999999997 6 5799988763

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.45  E-value=1.6e-12  Score=114.97  Aligned_cols=57  Identities=18%  Similarity=0.078  Sum_probs=50.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ...+|||+|||+|.++..|+..  +.+|+|+|+|+.+++.|++|++.++ + ++++++..+
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~-~-~~v~~~~~~   78 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLG-I-ENTELILDG   78 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHT-C-CCEEEEESC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCc
Confidence            3468999999999999988876  7899999999999999999999987 6 679988854

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.44  E-value=1.3e-12  Score=117.30  Aligned_cols=143  Identities=13%  Similarity=0.041  Sum_probs=106.1

Q ss_pred             CCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCC
Q 016734           87 TVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS  166 (384)
Q Consensus        87 rvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~  166 (384)
                      + |.++.++.++.+.+....      .....+|||+|||+|.++..++...++.+++|+|+++.+++.|++|+..++ +.
T Consensus        44 ~-~~~~~~~~~~~~~l~~~~------~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~  115 (207)
T 1jsx_A           44 R-DPNEMLVRHILDSIVVAP------YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK-LE  115 (207)
T ss_dssp             -----CHHHHHHHHHHHHGG------GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-CS
T ss_pred             C-CHHHHHHHHHHhhhhhhh------hcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC
Confidence            5 778888888887765320      002458999999999999999988888999999999999999999999987 66


Q ss_pred             CceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEE
Q 016734          167 ELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCI  246 (384)
Q Consensus       167 ~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~  246 (384)
                      + +.++.+|..+                                                    .    . ..++||+|+
T Consensus       116 ~-v~~~~~d~~~----------------------------------------------------~----~-~~~~~D~i~  137 (207)
T 1jsx_A          116 N-IEPVQSRVEE----------------------------------------------------F----P-SEPPFDGVI  137 (207)
T ss_dssp             S-EEEEECCTTT----------------------------------------------------S----C-CCSCEEEEE
T ss_pred             C-eEEEecchhh----------------------------------------------------C----C-ccCCcCEEE
Confidence            5 9998887432                                                    0    0 135799999


Q ss_pred             ECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEE
Q 016734          247 CNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVK  326 (384)
Q Consensus       247 cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~  326 (384)
                      ||. +                  .           .+..++++...+++++|++.++.| ..+.+++.++++  |+..++
T Consensus       138 ~~~-~------------------~-----------~~~~~l~~~~~~L~~gG~l~~~~~-~~~~~~~~~~~~--g~~~~~  184 (207)
T 1jsx_A          138 SRA-F------------------A-----------SLNDMVSWCHHLPGEQGRFYALKG-QMPEDEIALLPE--EYQVES  184 (207)
T ss_dssp             CSC-S------------------S-----------SHHHHHHHHTTSEEEEEEEEEEES-SCCHHHHHTSCT--TEEEEE
T ss_pred             Eec-c------------------C-----------CHHHHHHHHHHhcCCCcEEEEEeC-CCchHHHHHHhc--CCceee
Confidence            973 0                  0           134667777788899999999988 567777777665  777666


Q ss_pred             EE
Q 016734          327 TT  328 (384)
Q Consensus       327 ~~  328 (384)
                      +.
T Consensus       185 ~~  186 (207)
T 1jsx_A          185 VV  186 (207)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.44  E-value=3.3e-12  Score=111.85  Aligned_cols=147  Identities=16%  Similarity=0.123  Sum_probs=109.6

Q ss_pred             cCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCC
Q 016734           85 CPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH  164 (384)
Q Consensus        85 iPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~  164 (384)
                      +|+ |.+.....++.+.+..         ....+|||+|||+|.++..++...  .+++|+|+|+.+++.|++|++.++ 
T Consensus        13 ~~~-~~~~~~~~~~~~~~~~---------~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~-   79 (192)
T 1l3i_A           13 VPG-PTAMEVRCLIMCLAEP---------GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG-   79 (192)
T ss_dssp             SCC-CCCHHHHHHHHHHHCC---------CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT-
T ss_pred             CCC-CChHHHHHHHHHhcCC---------CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC-
Confidence            465 5666677777776643         234689999999999988888665  799999999999999999999997 


Q ss_pred             CCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEE
Q 016734          165 ISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDF  244 (384)
Q Consensus       165 l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~  244 (384)
                      +.+++.++.+|..+                                                       .+ ...+.||+
T Consensus        80 ~~~~~~~~~~d~~~-------------------------------------------------------~~-~~~~~~D~  103 (192)
T 1l3i_A           80 LGDNVTLMEGDAPE-------------------------------------------------------AL-CKIPDIDI  103 (192)
T ss_dssp             CCTTEEEEESCHHH-------------------------------------------------------HH-TTSCCEEE
T ss_pred             CCcceEEEecCHHH-------------------------------------------------------hc-ccCCCCCE
Confidence            76679988876310                                                       01 01247999


Q ss_pred             EEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeE
Q 016734          245 CICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI  324 (384)
Q Consensus       245 i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~  324 (384)
                      |+|++++..                             +..++++..++++.+|++............+.+.+++.|+ .
T Consensus       104 v~~~~~~~~-----------------------------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~-~  153 (192)
T 1l3i_A          104 AVVGGSGGE-----------------------------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF-D  153 (192)
T ss_dssp             EEESCCTTC-----------------------------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC-C
T ss_pred             EEECCchHH-----------------------------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC-c
Confidence            999987510                             2455666677888888887666656778899999999998 4


Q ss_pred             EEEEEe
Q 016734          325 VKTTEF  330 (384)
Q Consensus       325 v~~~e~  330 (384)
                      +.+.+.
T Consensus       154 ~~~~~~  159 (192)
T 1l3i_A          154 VNITEL  159 (192)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            555443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.44  E-value=1.1e-12  Score=117.94  Aligned_cols=121  Identities=16%  Similarity=0.160  Sum_probs=87.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||+|||+|.++..++.. ...+++|+|+|+.+++.|++|++.++ +  +++++.+|..+                
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~----------------  108 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFK-G--KFKVFIGDVSE----------------  108 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGT-T--SEEEEESCGGG----------------
T ss_pred             CcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC-C--CEEEEECchHH----------------
Confidence            3468999999999999888765 23489999999999999999999887 5  68998886321                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                              +   .++||+|+|||||+....                  
T Consensus       109 ----------------------------------------~---~~~~D~v~~~~p~~~~~~------------------  127 (207)
T 1wy7_A          109 ----------------------------------------F---NSRVDIVIMNPPFGSQRK------------------  127 (207)
T ss_dssp             ----------------------------------------C---CCCCSEEEECCCCSSSST------------------
T ss_pred             ----------------------------------------c---CCCCCEEEEcCCCccccC------------------
Confidence                                                    1   247999999999976421                  


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeE
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI  324 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~  324 (384)
                        |....++.    +...++  ++.|.+-+......+.+.+.+.+.|+..
T Consensus       128 --~~~~~~l~----~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~  169 (207)
T 1wy7_A          128 --HADRPFLL----KAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVV  169 (207)
T ss_dssp             --TTTHHHHH----HHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEE
T ss_pred             --CchHHHHH----HHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence              01233443    333343  6666555545667788888999999753

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.44  E-value=2.2e-12  Score=115.99  Aligned_cols=123  Identities=18%  Similarity=0.119  Sum_probs=95.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.++..++. .+..+++|+|+++.+++.|++|+..++ +.+ +.++.+|..+                 
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~-v~~~~~d~~~-----------------  120 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNG-IYD-IALQKTSLLA-----------------  120 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTT-CCC-CEEEESSTTT-----------------
T ss_pred             CCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcC-CCc-eEEEeccccc-----------------
Confidence            46899999999999888775 455699999999999999999999997 665 8998887431                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                            .   ..++||+|+||+|+..                      
T Consensus       121 --------------------------------------~---~~~~fD~i~~~~~~~~----------------------  137 (205)
T 3grz_A          121 --------------------------------------D---VDGKFDLIVANILAEI----------------------  137 (205)
T ss_dssp             --------------------------------------T---CCSCEEEEEEESCHHH----------------------
T ss_pred             --------------------------------------c---CCCCceEEEECCcHHH----------------------
Confidence                                                  0   1367999999987621                      


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEE-ecCCCCHHHHHHHHHHcCCeEEEEEE
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSM-VGRKSNLKFLISKLRKVGVTIVKTTE  329 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~-vgk~~~l~~l~~~L~~~g~~~v~~~e  329 (384)
                             +..++++..++++.+|++... +. ..+...+.+.+++.|+..+.+.+
T Consensus       138 -------~~~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~~~~~Gf~~~~~~~  184 (205)
T 3grz_A          138 -------LLDLIPQLDSHLNEDGQVIFSGID-YLQLPKIEQALAENSFQIDLKMR  184 (205)
T ss_dssp             -------HHHHGGGSGGGEEEEEEEEEEEEE-GGGHHHHHHHHHHTTEEEEEEEE
T ss_pred             -------HHHHHHHHHHhcCCCCEEEEEecC-cccHHHHHHHHHHcCCceEEeec
Confidence                   345566666677777776543 44 56799999999999998766554

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.43  E-value=4.6e-13  Score=121.45  Aligned_cols=94  Identities=11%  Similarity=-0.022  Sum_probs=65.4

Q ss_pred             ccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      .+.|..+.+|++. .++ |.+..+...+.+.+...        ....+|||+|||+|.++..++.+. ..+|+|+|+|+.
T Consensus        19 ~~~g~~l~~~~~~-~~r-p~~~~~~~~l~~~l~~~--------~~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~   87 (201)
T 2ift_A           19 LWRGRKLPVLNSE-GLR-PTGDRVKETLFNWLMPY--------IHQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKT   87 (201)
T ss_dssp             TTTTCEEECC-----------CHHHHHHHHHHHHH--------HTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHH
T ss_pred             eeCCcEecCCCCC-CcC-cCHHHHHHHHHHHHHHh--------cCCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHH
Confidence            4678888888763 445 55556666666655421        023589999999999988766543 358999999999


Q ss_pred             HHHHHHHHHHHCCCCC-CceEEEEcCC
Q 016734          151 ALEWAEKNVKSNPHIS-ELIEIRKVDN  176 (384)
Q Consensus       151 al~~A~~Ni~~n~~l~-~~I~~~~~d~  176 (384)
                      +++.|++|++.++ +. ++++++.+|.
T Consensus        88 ~l~~a~~~~~~~~-~~~~~v~~~~~d~  113 (201)
T 2ift_A           88 VANQLKKNLQTLK-CSSEQAEVINQSS  113 (201)
T ss_dssp             HHHHHHHHHHHTT-CCTTTEEEECSCH
T ss_pred             HHHHHHHHHHHhC-CCccceEEEECCH
Confidence            9999999999997 64 5799988773

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.42  E-value=2.7e-12  Score=128.38  Aligned_cols=161  Identities=7%  Similarity=0.049  Sum_probs=106.0

Q ss_pred             CCcEEEecCC-----CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeC
Q 016734           73 HGLNWWIPDG-----QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDM  147 (384)
Q Consensus        73 fgl~~~vp~~-----~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDi  147 (384)
                      .|+.|.++..     .+.+   +....-.++.+++.           ...+|||+|||+|.+++.++... ..+|+|+|+
T Consensus       179 ~g~~f~v~~~~~~~t~ff~---~~~~~~~~~~~~~~-----------~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~  243 (385)
T 2b78_A          179 NGISYNVFLNDGLMTGIFL---DQRQVRNELINGSA-----------AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDL  243 (385)
T ss_dssp             TTEEEEECSSSSSCCSSCG---GGHHHHHHHHHTTT-----------BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEES
T ss_pred             CCEEEEEeccccccCCcCC---cHHHHHHHHHHHhc-----------CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEEC
Confidence            6888888776     4442   22222334444331           23589999999999998888642 238999999


Q ss_pred             cHHHHHHHHHHHHHCCCCCC-ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCC
Q 016734          148 TDVALEWAEKNVKSNPHISE-LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSY  226 (384)
Q Consensus       148 d~~al~~A~~Ni~~n~~l~~-~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  226 (384)
                      |+.|++.|++|++.|+ +.+ +++++.+|..+                                                
T Consensus       244 s~~al~~A~~N~~~n~-~~~~~v~~~~~D~~~------------------------------------------------  274 (385)
T 2b78_A          244 AKRSRALSLAHFEANH-LDMANHQLVVMDVFD------------------------------------------------  274 (385)
T ss_dssp             CTTHHHHHHHHHHHTT-CCCTTEEEEESCHHH------------------------------------------------
T ss_pred             CHHHHHHHHHHHHHcC-CCccceEEEECCHHH------------------------------------------------
Confidence            9999999999999998 775 79999887421                                                


Q ss_pred             CCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecC
Q 016734          227 HGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGR  306 (384)
Q Consensus       227 ~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk  306 (384)
                          ++......+++||+|+|||||+......          ..       ..+..+..++..+..+++++|++.+....
T Consensus       275 ----~l~~~~~~~~~fD~Ii~DPP~~~~~~~~----------~~-------~~~~~~~~ll~~~~~~L~pgG~l~~~~~~  333 (385)
T 2b78_A          275 ----YFKYARRHHLTYDIIIIDPPSFARNKKE----------VF-------SVSKDYHKLIRQGLEILSENGLIIASTNA  333 (385)
T ss_dssp             ----HHHHHHHTTCCEEEEEECCCCC-----C----------CC-------CHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ----HHHHHHHhCCCccEEEECCCCCCCChhh----------HH-------HHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence                1111111246899999999998532110          00       02566788889998888988887655542


Q ss_pred             CC-CHHHHHHHHH
Q 016734          307 KS-NLKFLISKLR  318 (384)
Q Consensus       307 ~~-~l~~l~~~L~  318 (384)
                      .. ..+.+.+.++
T Consensus       334 ~~~~~~~~~~~i~  346 (385)
T 2b78_A          334 ANMTVSQFKKQIE  346 (385)
T ss_dssp             TTSCHHHHHHHHH
T ss_pred             CcCCHHHHHHHHH
Confidence            22 3444444443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.42  E-value=1.4e-12  Score=122.99  Aligned_cols=146  Identities=14%  Similarity=0.077  Sum_probs=109.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||||||+|++++.|+...++++|+|+|+++.+++.|++|++.++ +.+ |+++++|..+                
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-l~~-v~~~~~d~~~----------------  141 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG-LKG-ARALWGRAEV----------------  141 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-CSS-EEEEECCHHH----------------
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CCc-eEEEECcHHH----------------
Confidence            4568999999999999999988899999999999999999999999998 765 9999887421                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                           +.......++||+|+|+=                +   .+   
T Consensus       142 -------------------------------------~~~~~~~~~~fD~I~s~a----------------~---~~---  162 (249)
T 3g89_A          142 -------------------------------------LAREAGHREAYARAVARA----------------V---AP---  162 (249)
T ss_dssp             -------------------------------------HTTSTTTTTCEEEEEEES----------------S---CC---
T ss_pred             -------------------------------------hhcccccCCCceEEEECC----------------c---CC---
Confidence                                                 000000146899999951                0   00   


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCC--CCHHHHHHHHHHcCCeEEEEEEeeC-C-CeeEEEEEEecC
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRK--SNLKFLISKLRKVGVTIVKTTEFVQ-G-QTCRWGLAWSFV  345 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~--~~l~~l~~~L~~~g~~~v~~~e~~q-G-~t~Rw~~AWsf~  345 (384)
                              +..+++++..+++.+|.|.++.|..  ..+..+.+.+++.|+...++.++.. + ...|.++-+...
T Consensus       163 --------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~  229 (249)
T 3g89_A          163 --------LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKT  229 (249)
T ss_dssp             --------HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred             --------HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeC
Confidence                    3466777888899999998888842  2355667788889998777776633 3 247877777764

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.42  E-value=3.1e-12  Score=120.42  Aligned_cols=139  Identities=14%  Similarity=0.067  Sum_probs=103.1

Q ss_pred             CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      .|.+..+++++...+.           ...+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|++|+..|+ +. 
T Consensus       104 ~~tt~~~~~~l~~~~~-----------~~~~VLDiGcG~G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~-~~-  168 (254)
T 2nxc_A          104 HETTRLALKALARHLR-----------PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNG-VR-  168 (254)
T ss_dssp             SHHHHHHHHHHHHHCC-----------TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTT-CC-
T ss_pred             CHHHHHHHHHHHHhcC-----------CCCEEEEecCCCcHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcC-Cc-
Confidence            3556677777766532           2458999999999998887764  3499999999999999999999997 54 


Q ss_pred             ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734          168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC  247 (384)
Q Consensus       168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c  247 (384)
                       +.++.+|..                                                       ..+  ..++||+|+|
T Consensus       169 -v~~~~~d~~-------------------------------------------------------~~~--~~~~fD~Vv~  190 (254)
T 2nxc_A          169 -PRFLEGSLE-------------------------------------------------------AAL--PFGPFDLLVA  190 (254)
T ss_dssp             -CEEEESCHH-------------------------------------------------------HHG--GGCCEEEEEE
T ss_pred             -EEEEECChh-------------------------------------------------------hcC--cCCCCCEEEE
Confidence             788776531                                                       111  2357999999


Q ss_pred             CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEE-EecCCCCHHHHHHHHHHcCCeEEE
Q 016734          248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLRKVGVTIVK  326 (384)
Q Consensus       248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~-~vgk~~~l~~l~~~L~~~g~~~v~  326 (384)
                      |+++.                             .+..++.+..++++++|++.. .+. ..+...+.+.+++.|+..+.
T Consensus       191 n~~~~-----------------------------~~~~~l~~~~~~LkpgG~lils~~~-~~~~~~v~~~l~~~Gf~~~~  240 (254)
T 2nxc_A          191 NLYAE-----------------------------LHAALAPRYREALVPGGRALLTGIL-KDRAPLVREAMAGAGFRPLE  240 (254)
T ss_dssp             ECCHH-----------------------------HHHHHHHHHHHHEEEEEEEEEEEEE-GGGHHHHHHHHHHTTCEEEE
T ss_pred             CCcHH-----------------------------HHHHHHHHHHHHcCCCCEEEEEeec-cCCHHHHHHHHHHCCCEEEE
Confidence            98541                             134566777777788887654 333 56899999999999998777


Q ss_pred             EEE
Q 016734          327 TTE  329 (384)
Q Consensus       327 ~~e  329 (384)
                      +.+
T Consensus       241 ~~~  243 (254)
T 2nxc_A          241 EAA  243 (254)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.42  E-value=1.2e-12  Score=119.80  Aligned_cols=161  Identities=10%  Similarity=0.139  Sum_probs=110.3

Q ss_pred             CCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHH
Q 016734           81 DGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK  160 (384)
Q Consensus        81 ~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~  160 (384)
                      +.+++|. |++ ....|.. ++.          ....+|||||||+|.+...|+...++++|+|+|+++.+++.|++|++
T Consensus        17 ~~~~~~~-~~~-~~~~~~~-~f~----------~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~   83 (213)
T 2fca_A           17 ADIAISN-PAD-YKGKWNT-VFG----------NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVK   83 (213)
T ss_dssp             TTTBCSC-GGG-GTTCHHH-HHT----------SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH
T ss_pred             ccEEecC-ccc-cCCCHHH-HcC----------CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHH
Confidence            4566776 654 2234543 332          13458999999999999999998899999999999999999999999


Q ss_pred             HCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCC
Q 016734          161 SNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGE  240 (384)
Q Consensus       161 ~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~  240 (384)
                      .++ +. +|.++.+|..+                                                     +.... ..+
T Consensus        84 ~~~-~~-nv~~~~~d~~~-----------------------------------------------------l~~~~-~~~  107 (213)
T 2fca_A           84 DSE-AQ-NVKLLNIDADT-----------------------------------------------------LTDVF-EPG  107 (213)
T ss_dssp             HSC-CS-SEEEECCCGGG-----------------------------------------------------HHHHC-CTT
T ss_pred             HcC-CC-CEEEEeCCHHH-----------------------------------------------------HHhhc-CcC
Confidence            987 64 59998877421                                                     00001 245


Q ss_pred             cEEEEEECCC--cccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHH
Q 016734          241 QFDFCICNPP--FFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLR  318 (384)
Q Consensus       241 ~fD~i~cNPP--y~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~  318 (384)
                      .||.|++|.|  +.......            .+        .+...++++..++++.+|++.+..........+.+.+.
T Consensus       108 ~~d~v~~~~~~p~~~~~~~~------------~r--------l~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  167 (213)
T 2fca_A          108 EVKRVYLNFSDPWPKKRHEK------------RR--------LTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFS  167 (213)
T ss_dssp             SCCEEEEESCCCCCSGGGGG------------GS--------TTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred             CcCEEEEECCCCCcCccccc------------cc--------cCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            7999988854  32211100            00        01345667777888899998777654555778888999


Q ss_pred             HcCCeEEEEEEe
Q 016734          319 KVGVTIVKTTEF  330 (384)
Q Consensus       319 ~~g~~~v~~~e~  330 (384)
                      +.|+....+..+
T Consensus       168 ~~g~~~~~~~~d  179 (213)
T 2fca_A          168 EYGLLLTYVSLD  179 (213)
T ss_dssp             HHTCEEEEEESS
T ss_pred             HCCCcccccccc
Confidence            999876655543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.41  E-value=9.7e-12  Score=108.26  Aligned_cols=137  Identities=16%  Similarity=0.080  Sum_probs=100.3

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~  168 (384)
                      |.+.....++.+.+..         ....+|||+|||+|.++..++.  ++.+++|+|+++.+++.|++|++.++ + ++
T Consensus        18 ~~~~~~~~~~~~~~~~---------~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~   84 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNL---------NKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN-I-KN   84 (183)
T ss_dssp             CCCHHHHHHHHHHHCC---------CTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT-C-CS
T ss_pred             cCHHHHHHHHHHHcCC---------CCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC-C-Cc
Confidence            4456677777777743         2346899999999999888876  78899999999999999999999997 6 46


Q ss_pred             eEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEEC
Q 016734          169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN  248 (384)
Q Consensus       169 I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cN  248 (384)
                      +.++.+|..                                                       ..+  ..++||+|+||
T Consensus        85 ~~~~~~d~~-------------------------------------------------------~~~--~~~~~D~i~~~  107 (183)
T 2yxd_A           85 CQIIKGRAE-------------------------------------------------------DVL--DKLEFNKAFIG  107 (183)
T ss_dssp             EEEEESCHH-------------------------------------------------------HHG--GGCCCSEEEEC
T ss_pred             EEEEECCcc-------------------------------------------------------ccc--cCCCCcEEEEC
Confidence            898887632                                                       111  13579999999


Q ss_pred             CCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEE
Q 016734          249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT  328 (384)
Q Consensus       249 PPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~  328 (384)
                      +|  ..                            ...++++..++  .+|++........++..+.+.|++.|+. ++.+
T Consensus       108 ~~--~~----------------------------~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~-~~~~  154 (183)
T 2yxd_A          108 GT--KN----------------------------IEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYN-VDAV  154 (183)
T ss_dssp             SC--SC----------------------------HHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCE-EEEE
T ss_pred             Cc--cc----------------------------HHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCe-EEEE
Confidence            98  10                            22334444445  6676655554577889999999999963 4544

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.41  E-value=2.5e-12  Score=118.45  Aligned_cols=150  Identities=14%  Similarity=0.094  Sum_probs=102.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|++|++.++ +.+++.++.+|..+                 
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~-----------------  138 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYG-IADKIEFICGDFLL-----------------  138 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHH-----------------
T ss_pred             CCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC-CCcCeEEEECChHH-----------------
Confidence            468999999999999888865  5899999999999999999999997 77789999987421                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         +    . ..++||+|+|||||.........     + .....++.
T Consensus       139 -----------------------------------~----~-~~~~~D~v~~~~~~~~~~~~~~~-----~-~~~~~~L~  172 (241)
T 3gdh_A          139 -----------------------------------L----A-SFLKADVVFLSPPWGGPDYATAE-----T-FDIRTMMS  172 (241)
T ss_dssp             -----------------------------------H----G-GGCCCSEEEECCCCSSGGGGGSS-----S-BCTTTSCS
T ss_pred             -----------------------------------h----c-ccCCCCEEEECCCcCCcchhhhH-----H-HHHHhhcC
Confidence                                               0    0 24689999999999875432211     1 12334566


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEE
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGL  340 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~  340 (384)
                      +||-+ ++    .....+.....+   .+.+...++.+..+|...|...+.. ....|......+
T Consensus       173 pgG~~-i~----~~~~~~~~~~~~---~lp~~~~~~~~~~~l~~~g~~~i~~-~~~~~~~k~~~~  228 (241)
T 3gdh_A          173 PDGFE-IF----RLSKKITNNIVY---FLPRNADIDQVASLAGPGGQVEIEQ-NFLNNKLKTITA  228 (241)
T ss_dssp             SCHHH-HH----HHHHHHCSCEEE---EEETTBCHHHHHHTTCTTCCEEEEE-EEETTEEEEEEE
T ss_pred             Cccee-HH----HHHHhhCCceEE---ECCCCCCHHHHHHHhccCCCEEEEe-hhhcCccceEEE
Confidence            77752 22    223334333333   3455678889988888877654433 345666555443

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.40  E-value=9.4e-12  Score=115.36  Aligned_cols=170  Identities=11%  Similarity=0.069  Sum_probs=115.6

Q ss_pred             ccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734           84 LCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus        84 LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      ..|+ +..+.+..++.+.+.....  . .-....+|||||||+|.++..++...++.+|+|+|+|+.+++.|++|++.++
T Consensus        43 ~~~~-~~~~~~~~~~~d~l~~~~~--~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  118 (240)
T 1xdz_A           43 TSIT-EKKEVYLKHFYDSITAAFY--V-DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ  118 (240)
T ss_dssp             CSCC-SHHHHHHHTHHHHHGGGGT--S-CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             cccC-CHHHHHHHHHHHHHhHHHh--c-ccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            3455 6667777777766532110  0 0013468999999999999889887788999999999999999999999987


Q ss_pred             CCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEE
Q 016734          164 HISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFD  243 (384)
Q Consensus       164 ~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD  243 (384)
                       +. +|+++++|..+                                                    +... ....++||
T Consensus       119 -~~-~v~~~~~d~~~----------------------------------------------------~~~~-~~~~~~fD  143 (240)
T 1xdz_A          119 -LE-NTTFCHDRAET----------------------------------------------------FGQR-KDVRESYD  143 (240)
T ss_dssp             -CS-SEEEEESCHHH----------------------------------------------------HTTC-TTTTTCEE
T ss_pred             -CC-CEEEEeccHHH----------------------------------------------------hccc-ccccCCcc
Confidence             65 49999887421                                                    0000 00146899


Q ss_pred             EEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCC--CHHHHHHHHHHcC
Q 016734          244 FCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS--NLKFLISKLRKVG  321 (384)
Q Consensus       244 ~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~--~l~~l~~~L~~~g  321 (384)
                      +|+|+.  +                 .           -...+++++..+++.+|++.++.|...  .+..+.+.+++.|
T Consensus       144 ~V~~~~--~-----------------~-----------~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g  193 (240)
T 1xdz_A          144 IVTARA--V-----------------A-----------RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLG  193 (240)
T ss_dssp             EEEEEC--C-----------------S-----------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTT
T ss_pred             EEEEec--c-----------------C-----------CHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcC
Confidence            999953  0                 0           045667777788899999887777321  2456777888999


Q ss_pred             CeEEEEEEeeCC--CeeEEEEEE
Q 016734          322 VTIVKTTEFVQG--QTCRWGLAW  342 (384)
Q Consensus       322 ~~~v~~~e~~qG--~t~Rw~~AW  342 (384)
                      +..+.+..+...  ...|.++.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~l~~~  216 (240)
T 1xdz_A          194 GELENIHSFKLPIEESDRNIMVI  216 (240)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEE
T ss_pred             CeEeEEEEEecCCCCCceEEEEE
Confidence            977776655433  234544444

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.39  E-value=7e-12  Score=123.05  Aligned_cols=133  Identities=18%  Similarity=0.126  Sum_probs=95.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.+++. +.  ...+|+|+|+|+.|++.|++|++.|+ +.+++.++.+|..+                 
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~-l~~~v~~~~~D~~~-----------------  254 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNK-LEHKIIPILSDVRE-----------------  254 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCGGG-----------------
T ss_pred             CCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECChHH-----------------
Confidence            45899999999999888 65  47799999999999999999999998 77789999887421                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         +    .   ++||+|++|||++..                     
T Consensus       255 -----------------------------------~----~---~~fD~Vi~dpP~~~~---------------------  271 (336)
T 2yx1_A          255 -----------------------------------V----D---VKGNRVIMNLPKFAH---------------------  271 (336)
T ss_dssp             -----------------------------------C----C---CCEEEEEECCTTTGG---------------------
T ss_pred             -----------------------------------h----c---CCCcEEEECCcHhHH---------------------
Confidence                                               0    1   579999999998731                     


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEE-EEecCCCCHHHHHHHHHHc-CCe--EEEEEEeeCCCeeEEEEEEecC
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKV-GVT--IVKTTEFVQGQTCRWGLAWSFV  345 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t-~~vgk~~~l~~l~~~L~~~-g~~--~v~~~e~~qG~t~Rw~~AWsf~  345 (384)
                               .+++.+..+++.+|++. +.....  ...+.+.+++. ++.  .++..++...+  .|.+.|.|.
T Consensus       272 ---------~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~l~~~~~~~i~~~~~v~~~~p~--~~~~~~~~~  332 (336)
T 2yx1_A          272 ---------KFIDKALDIVEEGGVIHYYTIGKD--FDKAIKLFEKKCDCEVLEKRIVKSYAPR--EYILALDFK  332 (336)
T ss_dssp             ---------GGHHHHHHHEEEEEEEEEEEEESS--SHHHHHHHHHHSEEEEEEEEEEEEEETT--EEEEEEEEE
T ss_pred             ---------HHHHHHHHHcCCCCEEEEEEeecC--chHHHHHHHHhcCCcEEEEEEEeccCCC--CCEEEEEEE
Confidence                     23344555666777653 344433  67777788776 554  34445555444  344566654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.39  E-value=4.2e-12  Score=126.34  Aligned_cols=183  Identities=16%  Similarity=0.070  Sum_probs=109.6

Q ss_pred             hhccCCcEEEecCCC---------ccCCCcCHHHHHHHHHHHhccC-----CCCCCCCCCCCCeEEEECCcccHHHHHHH
Q 016734           69 LLHDHGLNWWIPDGQ---------LCPTVPNRSNYIHWIEDLLSSN-----IIPTTSRNGDKVKGFDIGTGANCIYPLLG  134 (384)
Q Consensus        69 L~~~fgl~~~vp~~~---------LiPrvP~r~~yi~~i~dll~~~-----~~~~~~~~~~~~~vLDIGtGsG~I~~~La  134 (384)
                      .++||+..+....+.         ++|+ +.++.+......++..-     ..+.. ......+|||||||+|.++..|+
T Consensus        25 v~~~Y~~~~~~~~~~~~~~~~~~~~~p~-~~~e~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~VLDlGcG~G~~~~~la  102 (383)
T 4fsd_A           25 VADYYGKTLQSSADLKTSACKLAAAVPE-SHRKILADIADEVLEKFYGCGSTLPAD-GSLEGATVLDLGCGTGRDVYLAS  102 (383)
T ss_dssp             -------------------------CCH-HHHHHHHTSCHHHHHHCCSCCCCCSCG-GGGTTCEEEEESCTTSHHHHHHH
T ss_pred             HHHHHHHHhcchhhcccccccCCCCCCH-HHHHHHHHhhHHHHHHhcCCCCccccc-cCCCCCEEEEecCccCHHHHHHH
Confidence            567777765554433         7777 77776655333333210     01110 01245689999999999999998


Q ss_pred             hhc-cCCEEEEEeCcHHHHHHHHHHHHHC-----C-CCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcC
Q 016734          135 ASL-LGWSFVGSDMTDVALEWAEKNVKSN-----P-HISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEE  207 (384)
Q Consensus       135 ~~~-~~~~v~gvDid~~al~~A~~Ni~~n-----~-~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (384)
                      ... ++.+|+|+|+++.+++.|++|++.+     + ....++.++.+|..+..                           
T Consensus       103 ~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~---------------------------  155 (383)
T 4fsd_A          103 KLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLA---------------------------  155 (383)
T ss_dssp             HHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGG---------------------------
T ss_pred             HHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhh---------------------------
Confidence            876 7889999999999999999998765     2 12257999998854200                           


Q ss_pred             CCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHH
Q 016734          208 AEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRII  287 (384)
Q Consensus       208 ~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii  287 (384)
                                . .          .-..+  .+++||+|+||..+....+                          ...++
T Consensus       156 ----------~-~----------~~~~~--~~~~fD~V~~~~~l~~~~d--------------------------~~~~l  186 (383)
T 4fsd_A          156 ----------T-A----------EPEGV--PDSSVDIVISNCVCNLSTN--------------------------KLALF  186 (383)
T ss_dssp             ----------G-C----------BSCCC--CTTCEEEEEEESCGGGCSC--------------------------HHHHH
T ss_pred             ----------h-c----------ccCCC--CCCCEEEEEEccchhcCCC--------------------------HHHHH
Confidence                      0 0          00011  3578999999976653210                          23556


Q ss_pred             HHHHHhhccCeEEEEE-ecC---------------------CCCHHHHHHHHHHcCCeEEEEEE
Q 016734          288 EDSVALKQTFRWYTSM-VGR---------------------KSNLKFLISKLRKVGVTIVKTTE  329 (384)
Q Consensus       288 ~eS~~l~~~~~w~t~~-vgk---------------------~~~l~~l~~~L~~~g~~~v~~~e  329 (384)
                      ++..++++.+|++.+. +..                     .-..+++.++|++.||..+++.+
T Consensus       187 ~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          187 KEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence            6677778888876543 221                     13458999999999998887765

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.39  E-value=3.6e-12  Score=118.44  Aligned_cols=128  Identities=17%  Similarity=0.182  Sum_probs=102.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhh-ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~-~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|.++..++.. .++.+++|+|+++.+++.|++|++.++ +.++++++.+|..+               
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~---------------  156 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG-FDDRVTIKLKDIYE---------------  156 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT-CTTTEEEECSCGGG---------------
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC-CCCceEEEECchhh---------------
Confidence            3568999999999999999887 568899999999999999999999997 78789998877321               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                              .+  .+++||+|+||||..                     
T Consensus       157 ----------------------------------------~~--~~~~~D~v~~~~~~~---------------------  173 (255)
T 3mb5_A          157 ----------------------------------------GI--EEENVDHVILDLPQP---------------------  173 (255)
T ss_dssp             ----------------------------------------CC--CCCSEEEEEECSSCG---------------------
T ss_pred             ----------------------------------------cc--CCCCcCEEEECCCCH---------------------
Confidence                                                    11  246799999998732                     


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcC--CeEEEEEEee
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG--VTIVKTTEFV  331 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g--~~~v~~~e~~  331 (384)
                                ..++++..++++.+|++.+......++..+.+.|++.|  +..+++.+..
T Consensus       174 ----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~e~~  223 (255)
T 3mb5_A          174 ----------ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVL  223 (255)
T ss_dssp             ----------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEECCC
T ss_pred             ----------HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEEEEe
Confidence                      11234555677888888777665678899999999999  9888888765

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.38  E-value=4.7e-12  Score=123.88  Aligned_cols=97  Identities=9%  Similarity=-0.003  Sum_probs=74.0

Q ss_pred             ccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      .+||..+.+...+++|+ ++...|-+.+..+.....       ..+.+|||||||+|+++..+++..+..+++++|+|+.
T Consensus        80 ~~~g~~l~ldg~~~~~~-~de~~y~e~l~~~~l~~~-------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~  151 (321)
T 2pt6_A           80 TTYGKVLVLDGVIQLTE-KDEFAYHEMMTHVPMTVS-------KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDET  151 (321)
T ss_dssp             SSSCEEEEETTEEEEET-TTHHHHHHHHHHHHHHHS-------SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHH
T ss_pred             CCCcEEEEECCEeeeCc-ccchHHHHHHHHHHHhcC-------CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHH
Confidence            57899999999999999 875555444443211110       1346899999999999988887666789999999999


Q ss_pred             HHHHHHHHHHH--CCCC-CCceEEEEcCC
Q 016734          151 ALEWAEKNVKS--NPHI-SELIEIRKVDN  176 (384)
Q Consensus       151 al~~A~~Ni~~--n~~l-~~~I~~~~~d~  176 (384)
                      +++.|++|+..  ++ + ..+++++.+|.
T Consensus       152 ~l~~ar~~~~~~~~~-~~~~~v~~~~~D~  179 (321)
T 2pt6_A          152 VIEVSKIYFKNISCG-YEDKRVNVFIEDA  179 (321)
T ss_dssp             HHHHHHHHCTTTSGG-GGSTTEEEEESCH
T ss_pred             HHHHHHHHHHhhccc-cCCCcEEEEEccH
Confidence            99999999875  22 3 35799988873

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.38  E-value=1.3e-11  Score=115.46  Aligned_cols=79  Identities=13%  Similarity=0.095  Sum_probs=63.1

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~  168 (384)
                      |.....+.++.+++...        ....+|||||||+|.++..++.. ++.+|+|+|+++.+++.|+++++.++ +.++
T Consensus        28 ~~~~~~~~~~l~~l~~~--------~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~   97 (267)
T 3kkz_A           28 PGSPEVTLKALSFIDNL--------TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG-LQNR   97 (267)
T ss_dssp             SCCHHHHHHHHTTCCCC--------CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT-CTTT
T ss_pred             CCCHHHHHHHHHhcccC--------CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC-CCcC
Confidence            44455555555555411        24569999999999999888876 77799999999999999999999998 8888


Q ss_pred             eEEEEcCCC
Q 016734          169 IEIRKVDNS  177 (384)
Q Consensus       169 I~~~~~d~~  177 (384)
                      ++++.+|..
T Consensus        98 v~~~~~d~~  106 (267)
T 3kkz_A           98 VTGIVGSMD  106 (267)
T ss_dssp             EEEEECCTT
T ss_pred             cEEEEcChh
Confidence            999998853

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.38  E-value=1.9e-11  Score=113.03  Aligned_cols=78  Identities=17%  Similarity=0.145  Sum_probs=62.7

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~  168 (384)
                      |.....+.++.+++...        ....+|||||||+|.++..++...+. +++|+|+++.+++.|++++..++ +.++
T Consensus        28 ~~~~~~~~~~l~~l~~~--------~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~   97 (257)
T 3f4k_A           28 PGSPEATRKAVSFINEL--------TDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKAN-CADR   97 (257)
T ss_dssp             SCCHHHHHHHHTTSCCC--------CTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTT-CTTT
T ss_pred             CCCHHHHHHHHHHHhcC--------CCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcC-CCCc
Confidence            44455566666555321        23458999999999999999887765 99999999999999999999998 8888


Q ss_pred             eEEEEcCC
Q 016734          169 IEIRKVDN  176 (384)
Q Consensus       169 I~~~~~d~  176 (384)
                      +.++.+|.
T Consensus        98 ~~~~~~d~  105 (257)
T 3f4k_A           98 VKGITGSM  105 (257)
T ss_dssp             EEEEECCT
T ss_pred             eEEEECCh
Confidence            99999885

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.37  E-value=1.5e-11  Score=113.66  Aligned_cols=77  Identities=17%  Similarity=0.199  Sum_probs=64.1

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~  168 (384)
                      |....++.++.+.+..         ....+|||||||+|.++..++... +.+++|+|+++.+++.|+++++.++ +.++
T Consensus        19 ~~~~~~~~~l~~~~~~---------~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~   87 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRM---------KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG-VSER   87 (256)
T ss_dssp             SCCHHHHHHHHHHTCC---------CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT-CTTT
T ss_pred             CCCHHHHHHHHHhcCC---------CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC-CCcc
Confidence            5566677777776642         234689999999999998888766 7799999999999999999999987 7778


Q ss_pred             eEEEEcCC
Q 016734          169 IEIRKVDN  176 (384)
Q Consensus       169 I~~~~~d~  176 (384)
                      +.++.+|.
T Consensus        88 v~~~~~d~   95 (256)
T 1nkv_A           88 VHFIHNDA   95 (256)
T ss_dssp             EEEEESCC
T ss_pred             eEEEECCh
Confidence            99998874

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.36  E-value=9.6e-12  Score=124.67  Aligned_cols=78  Identities=18%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccC-----------------------------
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-----------------------------  139 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~-----------------------------  139 (384)
                      |-++++...+..+...         .....+||+|||||.+.+.++....+                             
T Consensus       178 pl~e~lAa~ll~~~~~---------~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a  248 (385)
T 3ldu_A          178 PIRETLAAGLIYLTPW---------KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDA  248 (385)
T ss_dssp             CCCHHHHHHHHHTSCC---------CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCC---------CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHH
Confidence            6778877666654432         23468999999999998877654322                             


Q ss_pred             ---------CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          140 ---------WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       140 ---------~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                               .+|+|+|+|+.|++.|++|++.++ +.+.|++.++|.
T Consensus       249 ~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~g-l~~~i~~~~~D~  293 (385)
T 3ldu_A          249 FNKIDNESKFKIYGYDIDEESIDIARENAEIAG-VDEYIEFNVGDA  293 (385)
T ss_dssp             HHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEECCG
T ss_pred             HHHhhccCCceEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECCh
Confidence                     579999999999999999999998 888899999874

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.36  E-value=1.2e-11  Score=117.68  Aligned_cols=89  Identities=11%  Similarity=-0.009  Sum_probs=68.9

Q ss_pred             cCCcEEEecCCC--ccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           72 DHGLNWWIPDGQ--LCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        72 ~fgl~~~vp~~~--LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ..|+.|.++++.  +.|+ ..++...     ++..  .      ....+|||+|||+|.+++.++...+..+|+|+|+++
T Consensus        88 e~g~~f~~~~~~~f~~~~-~~~e~~~-----~~~~--~------~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~  153 (272)
T 3a27_A           88 EYGCLFKLDVAKIMWSQG-NIEERKR-----MAFI--S------NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP  153 (272)
T ss_dssp             ETTEEEEEETTTSCCCGG-GHHHHHH-----HHTS--C------CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH
T ss_pred             ECCEEEEEechhEEECCC-chHHHHH-----HHHh--c------CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH
Confidence            378899998887  6777 3333332     1211  0      134589999999999999999887777999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .|++.|++|++.|+ +. ++.++.+|.
T Consensus       154 ~av~~a~~n~~~n~-l~-~~~~~~~d~  178 (272)
T 3a27_A          154 TAYHYLCENIKLNK-LN-NVIPILADN  178 (272)
T ss_dssp             HHHHHHHHHHHHTT-CS-SEEEEESCG
T ss_pred             HHHHHHHHHHHHcC-CC-CEEEEECCh
Confidence            99999999999998 65 478888874

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.36  E-value=6.9e-12  Score=120.32  Aligned_cols=61  Identities=18%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             CCCeEEEECCcccHHHHHHH-hhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLG-ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La-~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++ ...++.+|+|+|+|+.+++.|++|+..++ +.++++++.+|.
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~  179 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA-LAGQITLHRQDA  179 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEECCG
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECch
Confidence            35689999999999988875 45678999999999999999999999987 788899999874

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.35  E-value=3.5e-11  Score=109.90  Aligned_cols=77  Identities=19%  Similarity=0.257  Sum_probs=60.8

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~  168 (384)
                      |....+...+.+++..        ...+.+|||||||+|.+...++...++.+++|+|+|+.+++.|++++..++    +
T Consensus        26 ~~~~~~~~~~~~~~~~--------~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~   93 (234)
T 3dtn_A           26 PCFDDFYGVSVSIASV--------DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL----K   93 (234)
T ss_dssp             TTHHHHHHHHHHTCCC--------SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT----T
T ss_pred             cCHHHHHHHHHHHhhc--------CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC----C
Confidence            4445555556665542        124579999999999999999988889999999999999999999986553    6


Q ss_pred             eEEEEcCCC
Q 016734          169 IEIRKVDNS  177 (384)
Q Consensus       169 I~~~~~d~~  177 (384)
                      +.++.+|..
T Consensus        94 ~~~~~~d~~  102 (234)
T 3dtn_A           94 VKYIEADYS  102 (234)
T ss_dssp             EEEEESCTT
T ss_pred             EEEEeCchh
Confidence            999988753

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.35  E-value=1.7e-11  Score=112.82  Aligned_cols=166  Identities=13%  Similarity=0.115  Sum_probs=114.2

Q ss_pred             ccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCC-------CCCCCCCCeEEEECCcccHHHHHHHhhccCCEEE
Q 016734           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPT-------TSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFV  143 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~-------~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~  143 (384)
                      ..||-.+   +.+++|+ |+.+.+.+.+.........+.       ...-....+|||+|||+|.++..++..  +.+++
T Consensus        44 ~~~G~~~---~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~  117 (248)
T 2yvl_A           44 KPEGVKI---NGFEVYR-PTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVW  117 (248)
T ss_dssp             CCTTEEE---TTEEEEC-CCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEE
T ss_pred             CCCCCEE---EEEEEeC-CCHHHHHHhcCcCCCCcccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEE
Confidence            4566554   7889999 988777643221100000000       000123468999999999999888876  78999


Q ss_pred             EEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCC
Q 016734          144 GSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQ  223 (384)
Q Consensus       144 gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  223 (384)
                      ++|+++.+++.|++|++.++ +.+++.++.+|..+                                             
T Consensus       118 ~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~---------------------------------------------  151 (248)
T 2yvl_A          118 TFEAVEEFYKTAQKNLKKFN-LGKNVKFFNVDFKD---------------------------------------------  151 (248)
T ss_dssp             EECSCHHHHHHHHHHHHHTT-CCTTEEEECSCTTT---------------------------------------------
T ss_pred             EEecCHHHHHHHHHHHHHcC-CCCcEEEEEcChhh---------------------------------------------
Confidence            99999999999999999987 76789888776431                                             


Q ss_pred             CCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEE
Q 016734          224 SSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM  303 (384)
Q Consensus       224 ~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~  303 (384)
                             .+   . .++.||+|++|||-          |                     ..++++..++++.+|++...
T Consensus       152 -------~~---~-~~~~~D~v~~~~~~----------~---------------------~~~l~~~~~~L~~gG~l~~~  189 (248)
T 2yvl_A          152 -------AE---V-PEGIFHAAFVDVRE----------P---------------------WHYLEKVHKSLMEGAPVGFL  189 (248)
T ss_dssp             -------SC---C-CTTCBSEEEECSSC----------G---------------------GGGHHHHHHHBCTTCEEEEE
T ss_pred             -------cc---c-CCCcccEEEECCcC----------H---------------------HHHHHHHHHHcCCCCEEEEE
Confidence                   00   0 13579999999871          1                     01134445677888988888


Q ss_pred             ecCCCCHHHHHHHHHHcCCeEEEEEEee
Q 016734          304 VGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (384)
Q Consensus       304 vgk~~~l~~l~~~L~~~g~~~v~~~e~~  331 (384)
                      .....++.++.+.|++. +..+++.+..
T Consensus       190 ~~~~~~~~~~~~~l~~~-f~~~~~~~~~  216 (248)
T 2yvl_A          190 LPTANQVIKLLESIENY-FGNLEVVEIL  216 (248)
T ss_dssp             ESSHHHHHHHHHHSTTT-EEEEEEEEEE
T ss_pred             eCCHHHHHHHHHHHHhh-CCcceEEEee
Confidence            87667888888888877 7777776654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.35  E-value=2.3e-11  Score=121.70  Aligned_cols=137  Identities=17%  Similarity=0.085  Sum_probs=93.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCC-CCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI-SELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l-~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|++|++.|+ + .++++++.+|..+                
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~v~~~~~D~~~----------------  282 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFK----------------  282 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESCHHH----------------
T ss_pred             CCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHH----------------
Confidence            3589999999999998888653 4599999999999999999999998 7 6689999887421                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          ++......+++||+|+|||||+......      ...       
T Consensus       283 ------------------------------------~~~~~~~~~~~fD~Ii~dpP~~~~~~~~------~~~-------  313 (396)
T 3c0k_A          283 ------------------------------------LLRTYRDRGEKFDVIVMDPPKFVENKSQ------LMG-------  313 (396)
T ss_dssp             ------------------------------------HHHHHHHTTCCEEEEEECCSSTTTCSSS------SSC-------
T ss_pred             ------------------------------------HHHHHHhcCCCCCEEEECCCCCCCChhH------HHH-------
Confidence                                                1111111246899999999998643211      000       


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEec-CCCC----HHHHHHHHHHcCCe
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVG-RKSN----LKFLISKLRKVGVT  323 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg-k~~~----l~~l~~~L~~~g~~  323 (384)
                          ....+..++.++..+++.+|++.+... ..-.    .+.+.+.+.+.|..
T Consensus       314 ----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  363 (396)
T 3c0k_A          314 ----ACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRD  363 (396)
T ss_dssp             ----CCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             ----HHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCe
Confidence                122356677777788888887654333 1222    22333466677754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.35  E-value=2e-11  Score=106.40  Aligned_cols=123  Identities=13%  Similarity=0.006  Sum_probs=91.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||+|||+|.++..++...++.+++|+|+++.+++.|++|++.++ +.+++ ++.+|..+                
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~-~~~~d~~~----------------   86 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG-VSDRI-AVQQGAPR----------------   86 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT-CTTSE-EEECCTTG----------------
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC-CCCCE-EEecchHh----------------
Confidence            3468999999999999999988888999999999999999999999987 77678 77766321                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                             .+....++||+|+|+.++..                     
T Consensus        87 ---------------------------------------~~~~~~~~~D~i~~~~~~~~---------------------  106 (178)
T 3hm2_A           87 ---------------------------------------AFDDVPDNPDVIFIGGGLTA---------------------  106 (178)
T ss_dssp             ---------------------------------------GGGGCCSCCSEEEECC-TTC---------------------
T ss_pred             ---------------------------------------hhhccCCCCCEEEECCcccH---------------------
Confidence                                                   01111268999999987632                     


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeE
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI  324 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~  324 (384)
                               ..++++..++++++|++........+...+.+.+++.|+..
T Consensus       107 ---------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~  147 (178)
T 3hm2_A          107 ---------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTI  147 (178)
T ss_dssp             ---------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEE
T ss_pred             ---------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCee
Confidence                     22334455677778877654444567788888999998653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.35  E-value=8.9e-11  Score=106.76  Aligned_cols=120  Identities=11%  Similarity=-0.003  Sum_probs=93.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||||||+|.++..++..  +.+|+|+|+++++++.|++|++.++ +.++++++.+|..+                
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~----------------  115 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYG-LSPRMRAVQGTAPA----------------  115 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCTTG----------------
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC-CCCCEEEEeCchhh----------------
Confidence            3468999999999999888876  7899999999999999999999998 77689999987431                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          .+    ...+.||+|++++..                       
T Consensus       116 ------------------------------------~~----~~~~~~D~v~~~~~~-----------------------  132 (204)
T 3njr_A          116 ------------------------------------AL----ADLPLPEAVFIGGGG-----------------------  132 (204)
T ss_dssp             ------------------------------------GG----TTSCCCSEEEECSCC-----------------------
T ss_pred             ------------------------------------hc----ccCCCCCEEEECCcc-----------------------
Confidence                                                01    012469999988621                       


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeE
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI  324 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~  324 (384)
                          .   .. ++++..++++++|++........++..+.+.|++.|+..
T Consensus       133 ----~---~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i  174 (204)
T 3njr_A          133 ----S---QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQL  174 (204)
T ss_dssp             ----C---HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEE
T ss_pred             ----c---HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcE
Confidence                0   22 556666778888887666655778999999999999653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.34  E-value=9e-12  Score=122.15  Aligned_cols=137  Identities=15%  Similarity=0.115  Sum_probs=94.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC-----CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG-----WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTG  189 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~-----~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~  189 (384)
                      ...+|||+|||+|.+...++...+.     .+++|+|+|+.+++.|+.|+..++ +  .+.++.+|...           
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-~--~~~i~~~D~l~-----------  195 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-Q--KMTLLHQDGLA-----------  195 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-C--CCEEEESCTTS-----------
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-C--CceEEECCCCC-----------
Confidence            3468999999999999888877654     789999999999999999999887 5  47888887431           


Q ss_pred             CccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCc--ccchhhh-ccCCcccc
Q 016734          190 KSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF--FESMEEA-GLNPKTSC  266 (384)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy--~~s~~~~-~~~p~~~~  266 (384)
                                                                  ..  ..++||+|||||||  ++..+.. ..++.   
T Consensus       196 --------------------------------------------~~--~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~---  226 (344)
T 2f8l_A          196 --------------------------------------------NL--LVDPVDVVISDLPVGYYPDDENAKTFELC---  226 (344)
T ss_dssp             --------------------------------------------CC--CCCCEEEEEEECCCSEESCHHHHTTSTTC---
T ss_pred             --------------------------------------------cc--ccCCccEEEECCCCCCcCchhhhhhcccc---
Confidence                                                        00  13679999999996  3322211 11111   


Q ss_pred             CCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEec----CCCCHHHHHHHHHHcCC
Q 016734          267 GGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG----RKSNLKFLISKLRKVGV  322 (384)
Q Consensus       267 ~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg----k~~~l~~l~~~L~~~g~  322 (384)
                              ...|.......++..+..+++.+|++.+.+.    ...+...+.+.|.+.+.
T Consensus       227 --------~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~  278 (344)
T 2f8l_A          227 --------REEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH  278 (344)
T ss_dssp             --------CSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred             --------CCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence                    1112212223345566677788888877761    24567889998888775

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.33  E-value=1.5e-11  Score=120.62  Aligned_cols=150  Identities=17%  Similarity=0.146  Sum_probs=104.6

Q ss_pred             CcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHH
Q 016734           74 GLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE  153 (384)
Q Consensus        74 gl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~  153 (384)
                      ++.+...++++.+.-.+.  ...++.+.+..         ....+|||+|||+|.++..++...+.++|+|+|+|+.+++
T Consensus       166 ~~~~~~~~gvf~~~~~d~--~~~~ll~~l~~---------~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~  234 (343)
T 2pjd_A          166 GLTVKTLPGVFSRDGLDV--GSQLLLSTLTP---------HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVE  234 (343)
T ss_dssp             TEEEEECTTCTTSSSCCH--HHHHHHHHSCT---------TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHH
T ss_pred             ceEEEecCCccCCCCCcH--HHHHHHHhcCc---------CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            455667788877653322  23334444422         1245899999999999999998888889999999999999


Q ss_pred             HHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCccc
Q 016734          154 WAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLV  233 (384)
Q Consensus       154 ~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~  233 (384)
                      .|++|+..++ +.  +.++.+|..+                                                       
T Consensus       235 ~a~~~~~~~~-~~--~~~~~~d~~~-------------------------------------------------------  256 (343)
T 2pjd_A          235 ASRATLAANG-VE--GEVFASNVFS-------------------------------------------------------  256 (343)
T ss_dssp             HHHHHHHHTT-CC--CEEEECSTTT-------------------------------------------------------
T ss_pred             HHHHHHHHhC-CC--CEEEEccccc-------------------------------------------------------
Confidence            9999999987 54  5566665321                                                       


Q ss_pred             ccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHH
Q 016734          234 GVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFL  313 (384)
Q Consensus       234 ~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l  313 (384)
                      .   ..++||+|+|||||+.....                     ...-..+++++..++++++|++.+..........+
T Consensus       257 ~---~~~~fD~Iv~~~~~~~g~~~---------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~  312 (343)
T 2pjd_A          257 E---VKGRFDMIISNPPFHDGMQT---------------------SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDV  312 (343)
T ss_dssp             T---CCSCEEEEEECCCCCSSSHH---------------------HHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHH
T ss_pred             c---ccCCeeEEEECCCcccCccC---------------------CHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHH
Confidence            0   14579999999999742110                     12335678888888899999887665544445544


Q ss_pred             HHH
Q 016734          314 ISK  316 (384)
Q Consensus       314 ~~~  316 (384)
                      .+.
T Consensus       313 l~~  315 (343)
T 2pjd_A          313 LDE  315 (343)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.33  E-value=6.4e-11  Score=112.42  Aligned_cols=61  Identities=8%  Similarity=0.162  Sum_probs=54.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.+...|+...  ++++|+|+|+|+.|++.|+++++..+ +..+|+++++|..
T Consensus        71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~-~~~~v~~~~~D~~  133 (261)
T 4gek_A           71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDIR  133 (261)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCTT
T ss_pred             CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc-cCceEEEeecccc
Confidence            4689999999999998888764  58899999999999999999999887 7788999998853

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.33  E-value=2.6e-11  Score=121.70  Aligned_cols=79  Identities=15%  Similarity=0.112  Sum_probs=62.3

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccC-----------------------------
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-----------------------------  139 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~-----------------------------  139 (384)
                      |-++++...+..+..-         .....+||.+||||.+.+.++....+                             
T Consensus       177 pl~e~LAaall~l~~~---------~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a  247 (384)
T 3ldg_A          177 PIKENMAAAIILLSNW---------FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEA  247 (384)
T ss_dssp             CCCHHHHHHHHHHTTC---------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCC---------CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHH
Confidence            6777776666555432         13468999999999998877654332                             


Q ss_pred             ---------CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          140 ---------WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       140 ---------~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                               .+++|+|+|+.|++.|++|++.++ +.++|.++++|..
T Consensus       248 ~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~g-l~~~I~~~~~D~~  293 (384)
T 3ldg_A          248 DEQADYDIQLDISGFDFDGRMVEIARKNAREVG-LEDVVKLKQMRLQ  293 (384)
T ss_dssp             HHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCGG
T ss_pred             HHhhhccCCceEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECChH
Confidence                     469999999999999999999998 8888999998743

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.33  E-value=1.6e-11  Score=132.02  Aligned_cols=135  Identities=19%  Similarity=0.202  Sum_probs=97.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCC-CceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~-~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|.+++.++.. ...+|+++|+|+.+++.|++|++.|+ +. ++++++++|..+                
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ng-l~~~~v~~i~~D~~~----------------  601 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNG-LTGRAHRLIQADCLA----------------  601 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT-CCSTTEEEEESCHHH----------------
T ss_pred             CCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHH----------------
Confidence            458999999999998887753 23479999999999999999999998 76 689999987421                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          ++.   ...++||+|+||||+|.......        +..    
T Consensus       602 ------------------------------------~l~---~~~~~fD~Ii~DPP~f~~~~~~~--------~~~----  630 (703)
T 3v97_A          602 ------------------------------------WLR---EANEQFDLIFIDPPTFSNSKRME--------DAF----  630 (703)
T ss_dssp             ------------------------------------HHH---HCCCCEEEEEECCCSBC---------------CC----
T ss_pred             ------------------------------------HHH---hcCCCccEEEECCccccCCccch--------hHH----
Confidence                                                111   12468999999999997532110        000    


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCe
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT  323 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~  323 (384)
                         .....+.+++..+..+++++|++.+.... .+...-.+.|++.|+.
T Consensus       631 ---~~~~~~~~ll~~a~~~LkpgG~L~~s~~~-~~~~~~~~~l~~~g~~  675 (703)
T 3v97_A          631 ---DVQRDHLALMKDLKRLLRAGGTIMFSNNK-RGFRMDLDGLAKLGLK  675 (703)
T ss_dssp             ---BHHHHHHHHHHHHHHHEEEEEEEEEEECC-TTCCCCHHHHHHTTEE
T ss_pred             ---HHHHHHHHHHHHHHHhcCCCcEEEEEECC-cccccCHHHHHHcCCc
Confidence               13567888999999999999998766652 2233335677788864

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.33  E-value=1.6e-11  Score=123.44  Aligned_cols=78  Identities=18%  Similarity=0.155  Sum_probs=61.5

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccC-----------------------------
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-----------------------------  139 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~-----------------------------  139 (384)
                      |-++++...+..+..-         .....+||+|||||.+.+.++....+                             
T Consensus       184 pl~e~lAa~ll~l~~~---------~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a  254 (393)
T 3k0b_A          184 PIKETMAAALVLLTSW---------HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEA  254 (393)
T ss_dssp             SCCHHHHHHHHHHSCC---------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCC---------CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHH
Confidence            6677776666554432         13457999999999998777654332                             


Q ss_pred             ---------CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          140 ---------WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       140 ---------~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                               .+|+|+|+|+.|++.|++|++.++ +.++|.++++|.
T Consensus       255 ~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~g-l~~~I~~~~~D~  299 (393)
T 3k0b_A          255 EDLANYDQPLNIIGGDIDARLIEIAKQNAVEAG-LGDLITFRQLQV  299 (393)
T ss_dssp             HHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTT-CTTCSEEEECCG
T ss_pred             HHhhcccCCceEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECCh
Confidence                     569999999999999999999998 888899999874

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.33  E-value=3.4e-11  Score=109.09  Aligned_cols=84  Identities=19%  Similarity=0.177  Sum_probs=62.8

Q ss_pred             CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734           83 QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus        83 ~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      .+-|..|-....+.++.+++...         ...+|||||||+|.+...++...+..+++|+|+|+.+++.|++++..+
T Consensus         6 ~~~~~~~~~~~~~~~l~~~l~~~---------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~   76 (219)
T 3jwg_A            6 ETEKKLNLNQQRLGTVVAVLKSV---------NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID   76 (219)
T ss_dssp             ------CHHHHHHHHHHHHHHHT---------TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG
T ss_pred             cCCcCCcchHHHHHHHHHHHhhc---------CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh
Confidence            33344344455566666666532         346899999999999999988777789999999999999999999887


Q ss_pred             CCCCC----ceEEEEcCC
Q 016734          163 PHISE----LIEIRKVDN  176 (384)
Q Consensus       163 ~~l~~----~I~~~~~d~  176 (384)
                      + +.+    +++++.+|.
T Consensus        77 ~-~~~~~~~~v~~~~~d~   93 (219)
T 3jwg_A           77 R-LPEMQRKRISLFQSSL   93 (219)
T ss_dssp             G-SCHHHHTTEEEEECCS
T ss_pred             c-cccccCcceEEEeCcc
Confidence            6 654    799998874

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.32  E-value=2.4e-12  Score=128.24  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      ..++++.+++..         ....+|||+|||+|.++..++.+. +..+++|+|+|+.+++.|           .++.+
T Consensus        26 ~l~~~~~~~~~~---------~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~   85 (421)
T 2ih2_A           26 EVVDFMVSLAEA---------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEG   85 (421)
T ss_dssp             HHHHHHHHHCCC---------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEE
T ss_pred             HHHHHHHHhhcc---------CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcE
Confidence            355666666532         124589999999999998888776 678999999999998877           25888


Q ss_pred             EEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCc
Q 016734          172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF  251 (384)
Q Consensus       172 ~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy  251 (384)
                      +++|..+                                                       .  ...++||+|+|||||
T Consensus        86 ~~~D~~~-------------------------------------------------------~--~~~~~fD~Ii~NPPy  108 (421)
T 2ih2_A           86 ILADFLL-------------------------------------------------------W--EPGEAFDLILGNPPY  108 (421)
T ss_dssp             EESCGGG-------------------------------------------------------C--CCSSCEEEEEECCCC
T ss_pred             EeCChhh-------------------------------------------------------c--CccCCCCEEEECcCc
Confidence            8877421                                                       0  023689999999999


Q ss_pred             ccchhhhc----cCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCC----CCHHHHHHHHHHcCC
Q 016734          252 FESMEEAG----LNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK----SNLKFLISKLRKVGV  322 (384)
Q Consensus       252 ~~s~~~~~----~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~----~~l~~l~~~L~~~g~  322 (384)
                      ........    ..+.. ...........+|.......+++.+..+++.+|.+.+.+...    ...+.+.+.|.+.+.
T Consensus       109 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          109 GIVGEASKYPIHVFKAV-KDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             CCBSCTTTCSBCCCHHH-HHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             cCcccccccccccCHHH-HHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence            87543110    00000 000000001123334456677788888889999987777532    256888898888876

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.31  E-value=4.6e-11  Score=117.67  Aligned_cols=98  Identities=10%  Similarity=0.025  Sum_probs=77.0

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ..+||..+.+...+++|+ ++...|-+.+..+.....       ..+.+|||||||+|+++..|+...+..+|+++|+|+
T Consensus        83 ~~~~g~~l~ldg~~~~~~-~de~~y~e~L~~l~l~~~-------~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~  154 (334)
T 1xj5_A           83 SATYGKVLVLDGVIQLTE-RDECAYQEMITHLPLCSI-------PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK  154 (334)
T ss_dssp             ESSSCEEEEETTEEEEET-TTHHHHHHHHHHHHHTTS-------SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH
T ss_pred             cCCCCeEEEECCEeecCc-CcchHHHHHHHHHHHhhC-------CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCH
Confidence            458999999999999998 776666665555432211       235699999999999999988776678999999999


Q ss_pred             HHHHHHHHHHHHC--CCC-CCceEEEEcCC
Q 016734          150 VALEWAEKNVKSN--PHI-SELIEIRKVDN  176 (384)
Q Consensus       150 ~al~~A~~Ni~~n--~~l-~~~I~~~~~d~  176 (384)
                      .+++.|++|+...  + + ..+++++.+|.
T Consensus       155 ~~l~~Ar~~~~~~~~g-l~~~rv~~~~~D~  183 (334)
T 1xj5_A          155 MVVDVSKQFFPDVAIG-YEDPRVNLVIGDG  183 (334)
T ss_dssp             HHHHHHHHHCHHHHGG-GGSTTEEEEESCH
T ss_pred             HHHHHHHHHHHhhccc-cCCCcEEEEECCH
Confidence            9999999998752  3 3 35799998873

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.30  E-value=2.7e-11  Score=115.61  Aligned_cols=97  Identities=11%  Similarity=-0.003  Sum_probs=60.2

Q ss_pred             hCCCcccceecc---CCCCccccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCC
Q 016734           35 LYPSFEPFVFYS---RDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTS  111 (384)
Q Consensus        35 ~~p~l~~~v~~~---~~g~~~idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~  111 (384)
                      .-|.|..|+...   ..|...+--         +.  -+.+||+.++          |.++.++.|+.+....       
T Consensus        26 ~~~~~~~~~~~~g~~~~~~~~~~i---------~g--~~~~~g~~~~----------~~~~~l~~~l~~~~~~-------   77 (281)
T 3bzb_A           26 QRSRVERYQSPAGAPLQCSVQVQT---------TQ--EHPLWTSHVW----------SGARALADTLCWQPEL-------   77 (281)
T ss_dssp             ---CEEEEECCSSCC-CCEEEEEC---------C-----------------------CHHHHHHHHHHHCGGG-------
T ss_pred             HHHHHHHHHhhccccccCCeEEEE---------CC--CCCCCCceee----------cHHHHHHHHHHhcchh-------
Confidence            345677777654   334333322         11  1457777655          6788888888876532       


Q ss_pred             CCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeC-cHHHHHHHHHHHHHC
Q 016734          112 RNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDM-TDVALEWAEKNVKSN  162 (384)
Q Consensus       112 ~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDi-d~~al~~A~~Ni~~n  162 (384)
                        ....+|||||||+|++++.++.. ...+|+|+|+ |+.+++.|++|++.|
T Consensus        78 --~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N  126 (281)
T 3bzb_A           78 --IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREH  126 (281)
T ss_dssp             --TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTT
T ss_pred             --cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHh
Confidence              13458999999999999887764 2349999999 899999999999544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.30  E-value=2.3e-12  Score=132.80  Aligned_cols=93  Identities=14%  Similarity=0.044  Sum_probs=75.8

Q ss_pred             ccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      ++|+..+. .++.|.|+ +.++.|..++.+.+..         ....+|||||||+|.++..++. .+..+|+|+|+++ 
T Consensus       125 ~~y~~~~~-~~~~L~d~-~~t~~~~~~il~~l~~---------~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-  191 (480)
T 3b3j_A          125 QFYGYLSQ-QQNMMQDY-VRTGTYQRAILQNHTD---------FKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-  191 (480)
T ss_dssp             EGGGCSCH-HHHHHHHH-HHHHHHHHHHHHTGGG---------TTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-
T ss_pred             HHHhhhcc-chhhhcCh-HhHHHHHHHHHHhhhh---------cCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-
Confidence            45555444 66788998 8899999988877643         1346899999999999987775 4667999999999 


Q ss_pred             HHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          151 ALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       151 al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      +++.|++|++.++ +.++|+++.+|..
T Consensus       192 ~l~~A~~~~~~~g-l~~~v~~~~~d~~  217 (480)
T 3b3j_A          192 MAQHAEVLVKSNN-LTDRIVVIPGKVE  217 (480)
T ss_dssp             HHHHHHHHHHHTT-CTTTEEEEESCTT
T ss_pred             HHHHHHHHHHHcC-CCCcEEEEECchh
Confidence            9999999999998 8889999998753

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.30  E-value=4.6e-11  Score=108.23  Aligned_cols=78  Identities=13%  Similarity=0.160  Sum_probs=64.5

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC-
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE-  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~-  167 (384)
                      |-....+.++.+.+...         ...+|||||||+|.+...++...+..+++|+|+|+.+++.|++++..++ +.+ 
T Consensus        12 ~~~~~~~~~l~~~l~~~---------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~   81 (217)
T 3jwh_A           12 SLNQQRMNGVVAALKQS---------NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR-LPRN   81 (217)
T ss_dssp             CHHHHHHHHHHHHHHHT---------TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCC-CCHH
T ss_pred             CHHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhc-CCcc
Confidence            55566677777777542         3469999999999999999887777899999999999999999998886 664 


Q ss_pred             ---ceEEEEcCC
Q 016734          168 ---LIEIRKVDN  176 (384)
Q Consensus       168 ---~I~~~~~d~  176 (384)
                         ++.++.+|.
T Consensus        82 ~~~~v~~~~~d~   93 (217)
T 3jwh_A           82 QWERLQLIQGAL   93 (217)
T ss_dssp             HHTTEEEEECCT
T ss_pred             cCcceEEEeCCc
Confidence               799998874

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.30  E-value=4.9e-11  Score=114.84  Aligned_cols=90  Identities=9%  Similarity=0.117  Sum_probs=67.7

Q ss_pred             cCCcE--EEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           72 DHGLN--WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        72 ~fgl~--~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ..|+.  |++....+.|+.  ..+- ..+.+++.           ...+|||+|||+|.+++.+|.. ...+|+|+|+|+
T Consensus        94 E~G~~~~~D~~k~~f~~~~--~~er-~ri~~~~~-----------~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np  158 (278)
T 3k6r_A           94 ENGIKYKLDVAKIMFSPAN--VKER-VRMAKVAK-----------PDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDP  158 (278)
T ss_dssp             ETTEEEEEETTTSCCCGGG--HHHH-HHHHHHCC-----------TTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCH
T ss_pred             ECCEEEEEeccceEEcCCc--HHHH-HHHHHhcC-----------CCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCH
Confidence            45665  455566788872  1111 12334332           3468999999999998877754 456999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .|++.|++|++.|+ ++++|+++++|..
T Consensus       159 ~a~~~~~~N~~~N~-v~~~v~~~~~D~~  185 (278)
T 3k6r_A          159 YTFKFLVENIHLNK-VEDRMSAYNMDNR  185 (278)
T ss_dssp             HHHHHHHHHHHHTT-CTTTEEEECSCTT
T ss_pred             HHHHHHHHHHHHcC-CCCcEEEEeCcHH
Confidence            99999999999998 9999999988853

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.29  E-value=1.3e-10  Score=104.80  Aligned_cols=132  Identities=17%  Similarity=0.240  Sum_probs=98.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||||||+|.++..++... +..+++|+|+++.+++.|++++..++ +. ++.++.+|..+               
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~d~~~---------------   99 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-LK-NVEVLKSEENK---------------   99 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-CT-TEEEEECBTTB---------------
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEeccccc---------------
Confidence            34689999999999999998886 67899999999999999999999887 55 69998887431               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                            + .+  .+++||+|+|+-.+....               +  
T Consensus       100 --------------------------------------~-~~--~~~~fD~v~~~~~l~~~~---------------~--  121 (219)
T 3dh0_A          100 --------------------------------------I-PL--PDNTVDFIFMAFTFHELS---------------E--  121 (219)
T ss_dssp             --------------------------------------C-SS--CSSCEEEEEEESCGGGCS---------------S--
T ss_pred             --------------------------------------C-CC--CCCCeeEEEeehhhhhcC---------------C--
Confidence                                                  0 00  346899999996554320               0  


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEe-c-----------CCCCHHHHHHHHHHcCCeEEEEEEe
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMV-G-----------RKSNLKFLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~v-g-----------k~~~l~~l~~~L~~~g~~~v~~~e~  330 (384)
                               ...++++..++++.+|++.... .           ..-+.+++.+.|++.|++.+++..+
T Consensus       122 ---------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  181 (219)
T 3dh0_A          122 ---------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV  181 (219)
T ss_dssp             ---------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ---------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee
Confidence                     2445566667778888765432 2           2235799999999999998887654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.29  E-value=4.9e-11  Score=118.46  Aligned_cols=130  Identities=21%  Similarity=0.132  Sum_probs=95.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+| |+|.++..++...+..+|+|+|+|+.+++.|++|++.++ +. +|+++.+|..+.                
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g-~~-~v~~~~~D~~~~----------------  233 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG-YE-DIEIFTFDLRKP----------------  233 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT-CC-CEEEECCCTTSC----------------
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-CEEEEEChhhhh----------------
Confidence            46899999 999999998877666799999999999999999999998 76 799998875320                


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                          +..  ...++||+|++||||...                     
T Consensus       234 ------------------------------------l~~--~~~~~fD~Vi~~~p~~~~---------------------  254 (373)
T 2qm3_A          234 ------------------------------------LPD--YALHKFDTFITDPPETLE---------------------  254 (373)
T ss_dssp             ------------------------------------CCT--TTSSCBSEEEECCCSSHH---------------------
T ss_pred             ------------------------------------chh--hccCCccEEEECCCCchH---------------------
Confidence                                                000  013579999999998742                     


Q ss_pred             cCchHHHHHHHHHHHHHhhccCe-EEEEEec-CCCCH---HHHHHHHH-HcCCeEEEEEE
Q 016734          276 SGGERAFITRIIEDSVALKQTFR-WYTSMVG-RKSNL---KFLISKLR-KVGVTIVKTTE  329 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~-w~t~~vg-k~~~l---~~l~~~L~-~~g~~~v~~~e  329 (384)
                        |    ...+++++.+.++++| +..+.+. ...+.   ..+.+.+. +.|+....+..
T Consensus       255 --~----~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  308 (373)
T 2qm3_A          255 --A----IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDIIR  308 (373)
T ss_dssp             --H----HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred             --H----HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhhh
Confidence              1    2556677777788877 4233343 24566   77788888 88876544443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.28  E-value=1.7e-11  Score=113.07  Aligned_cols=130  Identities=11%  Similarity=0.113  Sum_probs=93.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|.++..+|...++..|+|+|+++.+++.|++|++.++ +. +|.++.+|..+                 
T Consensus        35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~-l~-nv~~~~~Da~~-----------------   95 (218)
T 3dxy_A           35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG-LS-NLRVMCHDAVE-----------------   95 (218)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT-CS-SEEEECSCHHH-----------------
T ss_pred             CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC-CC-cEEEEECCHHH-----------------
Confidence            458999999999999999999999999999999999999999999987 65 49998877321                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEEC--CCcccchhhhccCCccccCCCcccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN--PPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cN--PPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                         ++.... .+++||.|++|  +||.........            +
T Consensus        96 -----------------------------------~l~~~~-~~~~~d~v~~~~~~p~~~~~~~~rr------------~  127 (218)
T 3dxy_A           96 -----------------------------------VLHKMI-PDNSLRMVQLFFPDPWHKARHNKRR------------I  127 (218)
T ss_dssp             -----------------------------------HHHHHS-CTTCEEEEEEESCCCCCSGGGGGGS------------S
T ss_pred             -----------------------------------HHHHHc-CCCChheEEEeCCCCccchhhhhhh------------h
Confidence                                               111101 35789999999  787654322110            0


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHc
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV  320 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~  320 (384)
                      +        ...++++..++++.+|++.+...-..-.+.+.+.+...
T Consensus       128 ~--------~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~  166 (218)
T 3dxy_A          128 V--------QVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSI  166 (218)
T ss_dssp             C--------SHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred             h--------hHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            0        12345666677888998766554333356677777665

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.28  E-value=2.8e-10  Score=102.42  Aligned_cols=139  Identities=9%  Similarity=0.045  Sum_probs=96.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|.+...++..  +.+++|+|+++.+++.|++++   +     +.++.+|..+                 
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~-----~~~~~~d~~~-----------------   96 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL---G-----RPVRTMLFHQ-----------------   96 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---T-----SCCEECCGGG-----------------
T ss_pred             CCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc---C-----CceEEeeecc-----------------
Confidence            468999999999998888765  679999999999999999987   2     3344444211                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                             +. .+++||+|+|+..+.....                   
T Consensus        97 ---------------------------------------~~-~~~~fD~v~~~~~l~~~~~-------------------  117 (211)
T 3e23_A           97 ---------------------------------------LD-AIDAYDAVWAHACLLHVPR-------------------  117 (211)
T ss_dssp             ---------------------------------------CC-CCSCEEEEEECSCGGGSCH-------------------
T ss_pred             ---------------------------------------CC-CCCcEEEEEecCchhhcCH-------------------
Confidence                                                   01 3578999999976653211                   


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCC--------------CCHHHHHHHHHHcC-CeEEEEEEee----CCCee
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRK--------------SNLKFLISKLRKVG-VTIVKTTEFV----QGQTC  336 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~--------------~~l~~l~~~L~~~g-~~~v~~~e~~----qG~t~  336 (384)
                           .-...++++..++++.+|++...+...              -+.+++.++|+++| ++.+.+.+..    .|...
T Consensus       118 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~~  192 (211)
T 3e23_A          118 -----DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELA  192 (211)
T ss_dssp             -----HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCEE
T ss_pred             -----HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCCc
Confidence                 013455666667778888765443322              37899999999999 9887775442    23346


Q ss_pred             EEEEEEecC
Q 016734          337 RWGLAWSFV  345 (384)
Q Consensus       337 Rw~~AWsf~  345 (384)
                      +|+.+..-.
T Consensus       193 ~wl~~~~~~  201 (211)
T 3e23_A          193 QFLHVSVRK  201 (211)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEec
Confidence            675554433

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.28  E-value=2.9e-10  Score=106.17  Aligned_cols=60  Identities=12%  Similarity=0.148  Sum_probs=53.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++... +.+++|+|+|+.+++.|++++..++ +.+++.++.+|.
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~  120 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG-LANRVTFSYADA  120 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEECcc
Confidence            34699999999999988888765 7899999999999999999999987 788899998874

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.27  E-value=3.2e-11  Score=121.29  Aligned_cols=131  Identities=14%  Similarity=0.119  Sum_probs=90.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.+++.++..  ++.|+|+|+|+.|++.|++|++.|+ +..  .+..+|..+                 
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng-~~~--~~~~~D~~~-----------------  272 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLG-LRV--DIRHGEALP-----------------  272 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT-CCC--EEEESCHHH-----------------
T ss_pred             CCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhC-CCC--cEEEccHHH-----------------
Confidence            468999999999999888864  5679999999999999999999998 664  344555321                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         ++...   .+.||+|+||||++.......                
T Consensus       273 -----------------------------------~l~~~---~~~fD~Ii~dpP~f~~~~~~~----------------  298 (393)
T 4dmg_A          273 -----------------------------------TLRGL---EGPFHHVLLDPPTLVKRPEEL----------------  298 (393)
T ss_dssp             -----------------------------------HHHTC---CCCEEEEEECCCCCCSSGGGH----------------
T ss_pred             -----------------------------------HHHHh---cCCCCEEEECCCcCCCCHHHH----------------
Confidence                                               11111   233999999999986432110                


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEE-EEecCCCCHHHHH----HHHHHcCCe
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLI----SKLRKVGVT  323 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t-~~vgk~~~l~~l~----~~L~~~g~~  323 (384)
                       -.....+.+++..+.++++++|++. +........+.+.    +.+.+.|..
T Consensus       299 -~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~  350 (393)
T 4dmg_A          299 -PAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRR  350 (393)
T ss_dssp             -HHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCC
T ss_pred             -HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCe
Confidence             0124557788889999999998875 4554444444443    344555654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.26  E-value=3e-10  Score=107.19  Aligned_cols=58  Identities=14%  Similarity=0.263  Sum_probs=51.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.+|||||||+|.++..++..  +.+++|+|+++.+++.|++++..++ +.+++.++.+|.
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~  126 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKG-VSDNMQFIHCAA  126 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-C-CGGGEEEEESCG
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEEcCH
Confidence            568999999999998888765  7899999999999999999999887 777899999874

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.26  E-value=1.4e-10  Score=107.35  Aligned_cols=128  Identities=13%  Similarity=0.082  Sum_probs=97.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhh-ccCCEEEEEeCcHHHHHHHHHHHHHC-CCCCCceEEEEcCCCCCCCcccccccCCcc
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDNSESTPSIQESLTGKSV  192 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~-~~~~~v~gvDid~~al~~A~~Ni~~n-~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~  192 (384)
                      ...+|||+|||+|.++..++.. .++.+++|+|+++.+++.|++|++.+ +  .+++.++.+|..+              
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g--~~~v~~~~~d~~~--------------  159 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ--VENVRFHLGKLEE--------------  159 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--CCCEEEEESCGGG--------------
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC--CCCEEEEECchhh--------------
Confidence            3458999999999999988887 45789999999999999999999887 6  2468988877421              


Q ss_pred             ccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccc
Q 016734          193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE  272 (384)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E  272 (384)
                                                            .  .+  .++.||+|+||+|-.                    
T Consensus       160 --------------------------------------~--~~--~~~~~D~v~~~~~~~--------------------  177 (258)
T 2pwy_A          160 --------------------------------------A--EL--EEAAYDGVALDLMEP--------------------  177 (258)
T ss_dssp             --------------------------------------C--CC--CTTCEEEEEEESSCG--------------------
T ss_pred             --------------------------------------c--CC--CCCCcCEEEECCcCH--------------------
Confidence                                                  0  01  236799999987621                    


Q ss_pred             ccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEee
Q 016734          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (384)
Q Consensus       273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~  331 (384)
                                 ..++++..++++.+|++.+......++..+.+.|++.|+..+++.+..
T Consensus       178 -----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~  225 (258)
T 2pwy_A          178 -----------WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLEVG  225 (258)
T ss_dssp             -----------GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEEEE
T ss_pred             -----------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEEee
Confidence                       122344556677888887777655678889999999999888888754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.26  E-value=1.5e-10  Score=112.03  Aligned_cols=175  Identities=10%  Similarity=0.013  Sum_probs=111.5

Q ss_pred             cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      +||..+.+........ .....|-+.+..+.....       ..+.+|||||||+|.++..+++..+..+++++|+|+.+
T Consensus        60 ~~g~~l~ldg~~~~~~-~de~~y~e~l~~~~l~~~-------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~  131 (304)
T 3bwc_A           60 PWGTVMALDGCIQVTD-YDEFVYHEVLGHTSLCSH-------PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEV  131 (304)
T ss_dssp             SCCEEEEETTEEEEET-TTHHHHHHHHHHHHHTTS-------SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHH
T ss_pred             ccceEEEECCeeeeec-ccchHHHHHHhhhhhhcC-------CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHH
Confidence            4677776665444443 333445554444322111       23568999999999999888876567899999999999


Q ss_pred             HHHHHHHHHH--CCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          152 LEWAEKNVKS--NPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       152 l~~A~~Ni~~--n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      ++.|++++..  .+....+++++.+|..+                                                   
T Consensus       132 i~~a~~~~~~~~~~~~~~~v~~~~~D~~~---------------------------------------------------  160 (304)
T 3bwc_A          132 MEQSKQHFPQISRSLADPRATVRVGDGLA---------------------------------------------------  160 (304)
T ss_dssp             HHHHHHHCHHHHGGGGCTTEEEEESCHHH---------------------------------------------------
T ss_pred             HHHHHHHhHHhhcccCCCcEEEEECcHHH---------------------------------------------------
Confidence            9999998742  11123579998887321                                                   


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCC--
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK--  307 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~--  307 (384)
                       +....  .+++||+|+||+|+...       |...               .+-..++++..+.++.+|++.+..+..  
T Consensus       161 -~~~~~--~~~~fDvIi~d~~~~~~-------~~~~---------------l~~~~~l~~~~~~LkpgG~lv~~~~~~~~  215 (304)
T 3bwc_A          161 -FVRQT--PDNTYDVVIIDTTDPAG-------PASK---------------LFGEAFYKDVLRILKPDGICCNQGESIWL  215 (304)
T ss_dssp             -HHHSS--CTTCEEEEEEECC-------------------------------CCHHHHHHHHHHEEEEEEEEEEECCTTT
T ss_pred             -HHHhc--cCCceeEEEECCCCccc-------cchh---------------hhHHHHHHHHHHhcCCCcEEEEecCCccc
Confidence             00000  25689999999876321       1000               011344456667888999987766532  


Q ss_pred             --CCHHHHHHHHHHcCCeEEEEEEe
Q 016734          308 --SNLKFLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       308 --~~l~~l~~~L~~~g~~~v~~~e~  330 (384)
                        .....+.+.|++.||..+++...
T Consensus       216 ~~~~~~~~~~~l~~~GF~~v~~~~~  240 (304)
T 3bwc_A          216 DLELIEKMSRFIRETGFASVQYALM  240 (304)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred             chHHHHHHHHHHHhCCCCcEEEEEe
Confidence              24678888999999988877654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.25  E-value=4.8e-11  Score=118.90  Aligned_cols=135  Identities=15%  Similarity=0.168  Sum_probs=93.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.+++.++..  ..+|+|+|+++.+++.|++|++.|+ +.+ +.++.+|..+                 
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~-~~~-~~~~~~d~~~-----------------  268 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG-LGN-VRVLEANAFD-----------------  268 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT-CTT-EEEEESCHHH-----------------
T ss_pred             CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC-CCC-ceEEECCHHH-----------------
Confidence            358999999999999988876  5689999999999999999999998 765 8998887421                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         ++..+...+++||+|+||||++.......                
T Consensus       269 -----------------------------------~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~----------------  297 (382)
T 1wxx_A          269 -----------------------------------LLRRLEKEGERFDLVVLDPPAFAKGKKDV----------------  297 (382)
T ss_dssp             -----------------------------------HHHHHHHTTCCEEEEEECCCCSCCSTTSH----------------
T ss_pred             -----------------------------------HHHHHHhcCCCeeEEEECCCCCCCChhHH----------------
Confidence                                               11111112568999999999986432110                


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEec-CCCCH----HHHHHHHHHcCCe
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVG-RKSNL----KFLISKLRKVGVT  323 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg-k~~~l----~~l~~~L~~~g~~  323 (384)
                       .....-...++.++..+++++|++.+... ..-..    +.+.+.+.+.|..
T Consensus       298 -~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  349 (382)
T 1wxx_A          298 -ERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL  349 (382)
T ss_dssp             -HHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence             00234567788888888888887654432 22222    2233455566653

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.24  E-value=1e-10  Score=112.81  Aligned_cols=172  Identities=13%  Similarity=0.073  Sum_probs=110.1

Q ss_pred             cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      .||..+.++..++++. ++...|-+.+..+.....       ..+.+|||||||+|.++..+++..+..+++++|+|+.+
T Consensus        55 ~~g~~l~ldg~~~~~~-~de~~y~e~l~~~~l~~~-------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~  126 (296)
T 1inl_A           55 DLGVVFALDGITMTTE-KDEFMYHEMLAHVPMFLH-------PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLV  126 (296)
T ss_dssp             TTEEEEEETTEEEEET-TTHHHHHHHHHHHHHHHS-------SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHH
T ss_pred             CCcEEEEECCEEeecc-cchhHHHHHHhHHHHhcC-------CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHH
Confidence            4788888887677776 554445554443311110       13468999999999999888876567899999999999


Q ss_pred             HHHHHHHHHH--CCCC-CCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCC
Q 016734          152 LEWAEKNVKS--NPHI-SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG  228 (384)
Q Consensus       152 l~~A~~Ni~~--n~~l-~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  228 (384)
                      ++.|++|+..  ++ + .++++++.+|..+                                                  
T Consensus       127 ~~~a~~~~~~~~~~-~~~~~v~~~~~D~~~--------------------------------------------------  155 (296)
T 1inl_A          127 IEAARKYLKQTSCG-FDDPRAEIVIANGAE--------------------------------------------------  155 (296)
T ss_dssp             HHHHHHHCHHHHGG-GGCTTEEEEESCHHH--------------------------------------------------
T ss_pred             HHHHHHHhHhhccc-cCCCceEEEECcHHH--------------------------------------------------
Confidence            9999999864  32 3 3579999887321                                                  


Q ss_pred             CCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCC-
Q 016734          229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK-  307 (384)
Q Consensus       229 ~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~-  307 (384)
                        .+   ....++||+|+||+|....      .|..               -.+...++++..++++.+|++.+..+.. 
T Consensus       156 --~l---~~~~~~fD~Ii~d~~~~~~------~~~~---------------~l~~~~~l~~~~~~LkpgG~lv~~~~~~~  209 (296)
T 1inl_A          156 --YV---RKFKNEFDVIIIDSTDPTA------GQGG---------------HLFTEEFYQACYDALKEDGVFSAETEDPF  209 (296)
T ss_dssp             --HG---GGCSSCEEEEEEEC-------------------------------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             --HH---hhCCCCceEEEEcCCCccc------Cchh---------------hhhHHHHHHHHHHhcCCCcEEEEEccCcc
Confidence              01   0124679999999874201      1100               0022445566677889999988776532 


Q ss_pred             ---CCHHHHHHHHHHcCCeEEEEEE
Q 016734          308 ---SNLKFLISKLRKVGVTIVKTTE  329 (384)
Q Consensus       308 ---~~l~~l~~~L~~~g~~~v~~~e  329 (384)
                         ..+..+.+.|++. +..+....
T Consensus       210 ~~~~~~~~~~~~l~~~-F~~v~~~~  233 (296)
T 1inl_A          210 YDIGWFKLAYRRISKV-FPITRVYL  233 (296)
T ss_dssp             TTHHHHHHHHHHHHHH-CSEEEEEE
T ss_pred             cCHHHHHHHHHHHHHH-CCceEEEE
Confidence               2255667777776 55555543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.24  E-value=1.6e-10  Score=104.68  Aligned_cols=58  Identities=26%  Similarity=0.355  Sum_probs=49.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCC----CCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI----SELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l----~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.++..++..  +.+++|+|+++.+++.|++++..++ +    .+++.++.+|.
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~   92 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPG-LNQKTGGKAEFKVENA   92 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCS-CCSSSSCEEEEEECCT
T ss_pred             CCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcC-CccccCcceEEEEecc
Confidence            468999999999998888866  7799999999999999999998776 4    23578887764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.24  E-value=6e-11  Score=112.38  Aligned_cols=129  Identities=12%  Similarity=0.090  Sum_probs=98.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhh-ccCCEEEEEeCcHHHHHHHHHHHHHC-CCCCCceEEEEcCCCCCCCcccccccCCcc
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDNSESTPSIQESLTGKSV  192 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~-~~~~~v~gvDid~~al~~A~~Ni~~n-~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~  192 (384)
                      ...+|||+|||+|.++..++.. .++.+++|+|+++.+++.|++|++.+ + + +++.++.+|..+              
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-~-~~v~~~~~d~~~--------------  173 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-I-GNVRTSRSDIAD--------------  173 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-C-TTEEEECSCTTT--------------
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-C-CcEEEEECchhc--------------
Confidence            3468999999999999998877 56789999999999999999999988 6 3 368888776421              


Q ss_pred             ccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccc
Q 016734          193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE  272 (384)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E  272 (384)
                                                               .+  .+++||+|+||+|-.                    
T Consensus       174 -----------------------------------------~~--~~~~fD~Vi~~~~~~--------------------  190 (275)
T 1yb2_A          174 -----------------------------------------FI--SDQMYDAVIADIPDP--------------------  190 (275)
T ss_dssp             -----------------------------------------CC--CSCCEEEEEECCSCG--------------------
T ss_pred             -----------------------------------------cC--cCCCccEEEEcCcCH--------------------
Confidence                                                     01  236799999987621                    


Q ss_pred             ccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCC
Q 016734          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQG  333 (384)
Q Consensus       273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG  333 (384)
                                 ..++++...+++.+|++........+...+.+.|++.|+..+++.+....
T Consensus       191 -----------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  240 (275)
T 1yb2_A          191 -----------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELMKR  240 (275)
T ss_dssp             -----------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEEEC
T ss_pred             -----------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEEEecc
Confidence                       02334555677888887766665557788889999999988888776543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.24  E-value=3.4e-10  Score=108.05  Aligned_cols=60  Identities=13%  Similarity=0.065  Sum_probs=53.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..++...+ .+|+|+|+|+.+++.|++++..++ +.++|.++.+|.
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~  131 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQGW  131 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC-CSSCEEEEECCG
T ss_pred             CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCH
Confidence            346899999999999988887755 899999999999999999999998 888899998873

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.24  E-value=2e-10  Score=103.91  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=48.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.++..++...+  +++|+|+|+.+++.|++++..++   .++.++.+|.
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~   94 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDA   94 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCT
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC---CCceEEECch
Confidence            46899999999999988887654  99999999999999999998875   4688988874

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.24  E-value=3.8e-11  Score=120.00  Aligned_cols=115  Identities=17%  Similarity=0.128  Sum_probs=84.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.+++.++.. ...+|+|+|+++.+++.|++|++.|+ +.++++++.+|..+                 
T Consensus       218 ~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~-~~~~v~~~~~d~~~-----------------  278 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFE-----------------  278 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHH-----------------
T ss_pred             CCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEECCHHH-----------------
Confidence            458999999999999888865 33499999999999999999999998 77689999887421                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         ++..+....++||+|++|||++.......                
T Consensus       279 -----------------------------------~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~----------------  307 (396)
T 2as0_A          279 -----------------------------------EMEKLQKKGEKFDIVVLDPPAFVQHEKDL----------------  307 (396)
T ss_dssp             -----------------------------------HHHHHHHTTCCEEEEEECCCCSCSSGGGH----------------
T ss_pred             -----------------------------------HHHHHHhhCCCCCEEEECCCCCCCCHHHH----------------
Confidence                                               11111112468999999999986432110                


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEE
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYT  301 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t  301 (384)
                       -....-...++.++..+++.+|++.
T Consensus       308 -~~~~~~~~~~l~~~~~~LkpgG~lv  332 (396)
T 2as0_A          308 -KAGLRAYFNVNFAGLNLVKDGGILV  332 (396)
T ss_dssp             -HHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             -HHHHHHHHHHHHHHHHhcCCCcEEE
Confidence             0013446677888888888888653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.24  E-value=6.3e-11  Score=106.17  Aligned_cols=53  Identities=21%  Similarity=0.058  Sum_probs=44.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ...+|||+|||+|.++..++.. ...+++|+|+|+.+++.|++|+.       +++++.+|
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d  103 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-------GVNFMVAD  103 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-------TSEEEECC
T ss_pred             CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-------CCEEEECc
Confidence            3468999999999998888765 34489999999999999999875       37788776

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.23  E-value=3.4e-10  Score=103.20  Aligned_cols=74  Identities=15%  Similarity=0.039  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (384)
Q Consensus        91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~  170 (384)
                      ...+..++.+++....       ....+|||||||+|.+...++..  +.+++|+|+++.+++.|++++..++ +  ++.
T Consensus        20 ~~~~~~~~~~~l~~~~-------~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~-~--~~~   87 (246)
T 1y8c_A           20 YKKWSDFIIEKCVENN-------LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQG-L--KPR   87 (246)
T ss_dssp             HHHHHHHHHHHHHTTT-------CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTT-C--CCE
T ss_pred             HHHHHHHHHHHHHHhC-------CCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcC-C--CeE
Confidence            4556777777775421       13569999999999998887765  6799999999999999999998876 4  588


Q ss_pred             EEEcCC
Q 016734          171 IRKVDN  176 (384)
Q Consensus       171 ~~~~d~  176 (384)
                      ++.+|.
T Consensus        88 ~~~~d~   93 (246)
T 1y8c_A           88 LACQDI   93 (246)
T ss_dssp             EECCCG
T ss_pred             EEeccc
Confidence            877663

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.23  E-value=1e-10  Score=107.18  Aligned_cols=139  Identities=17%  Similarity=0.216  Sum_probs=97.5

Q ss_pred             CCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH
Q 016734           82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (384)
Q Consensus        82 ~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~  161 (384)
                      ...+|+ |.++.++..+...+..          ...+|||||||+|.++..++..  +.+|+|+|+++.+++.|+++   
T Consensus        26 ~~~~~~-~~~~~l~~~~~~~~~~----------~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---   89 (226)
T 3m33_A           26 ARVLSG-PDPELTFDLWLSRLLT----------PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN---   89 (226)
T ss_dssp             CCEESS-SCTTHHHHHHHHHHCC----------TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH---
T ss_pred             ccccCC-CCHHHHHHHHHHhcCC----------CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh---
Confidence            355777 8877777766654321          3468999999999998888765  67999999999999999998   


Q ss_pred             CCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccC-CC
Q 016734          162 NPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRD-GE  240 (384)
Q Consensus       162 n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~-~~  240 (384)
                      .    .+++++.+|..+.                                                    +   ... ++
T Consensus        90 ~----~~~~~~~~d~~~~----------------------------------------------------~---~~~~~~  110 (226)
T 3m33_A           90 A----PHADVYEWNGKGE----------------------------------------------------L---PAGLGA  110 (226)
T ss_dssp             C----TTSEEEECCSCSS----------------------------------------------------C---CTTCCC
T ss_pred             C----CCceEEEcchhhc----------------------------------------------------c---CCcCCC
Confidence            2    2488888875310                                                    0   002 56


Q ss_pred             cEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHc
Q 016734          241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV  320 (384)
Q Consensus       241 ~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~  320 (384)
                      +||+|+||+.           +.                     .++++..++++++|++. ..+...+...+.+.|.+.
T Consensus       111 ~fD~v~~~~~-----------~~---------------------~~l~~~~~~LkpgG~l~-~~~~~~~~~~~~~~l~~~  157 (226)
T 3m33_A          111 PFGLIVSRRG-----------PT---------------------SVILRLPELAAPDAHFL-YVGPRLNVPEVPERLAAV  157 (226)
T ss_dssp             CEEEEEEESC-----------CS---------------------GGGGGHHHHEEEEEEEE-EEESSSCCTHHHHHHHHT
T ss_pred             CEEEEEeCCC-----------HH---------------------HHHHHHHHHcCCCcEEE-EeCCcCCHHHHHHHHHHC
Confidence            8999999931           11                     11122334566677765 444467888999999999


Q ss_pred             CCeEEEEE
Q 016734          321 GVTIVKTT  328 (384)
Q Consensus       321 g~~~v~~~  328 (384)
                      |+..+.+.
T Consensus       158 Gf~~~~~~  165 (226)
T 3m33_A          158 GWDIVAED  165 (226)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEE
Confidence            99866654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.23  E-value=8.1e-11  Score=108.77  Aligned_cols=80  Identities=9%  Similarity=0.007  Sum_probs=66.0

Q ss_pred             CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCC
Q 016734           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPH  164 (384)
Q Consensus        86 PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~  164 (384)
                      +. |++..++.++......         ....+|||||||+|..++.++...+ +.+|+++|+|+++++.|++|++.++ 
T Consensus        37 i~-~~~~~~l~~l~~~~~~---------~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-  105 (221)
T 3dr5_A           37 PD-EMTGQLLTTLAATTNG---------NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG-  105 (221)
T ss_dssp             CC-HHHHHHHHHHHHHSCC---------TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT-
T ss_pred             CC-HHHHHHHHHHHHhhCC---------CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-
Confidence            44 7788888777765421         1234899999999999999998765 7899999999999999999999998 


Q ss_pred             CC-CceEEEEcCC
Q 016734          165 IS-ELIEIRKVDN  176 (384)
Q Consensus       165 l~-~~I~~~~~d~  176 (384)
                      +. ++|+++.+|.
T Consensus       106 ~~~~~i~~~~gda  118 (221)
T 3dr5_A          106 YSPSRVRFLLSRP  118 (221)
T ss_dssp             CCGGGEEEECSCH
T ss_pred             CCcCcEEEEEcCH
Confidence            77 7899998873

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.22  E-value=1.5e-10  Score=110.31  Aligned_cols=58  Identities=14%  Similarity=0.201  Sum_probs=49.9

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCC--CceEEEEcCCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS--ELIEIRKVDNS  177 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~--~~I~~~~~d~~  177 (384)
                      .+|||||||+|.++..|+..  +.+|+|+|+|+.+++.|++++..++ +.  .+|.++.+|..
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~v~~~~~d~~  143 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAP-ADVRDRCTLVQGDMS  143 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSC-HHHHTTEEEEECBTT
T ss_pred             CcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcc-cccccceEEEeCchh
Confidence            48999999999998888865  6799999999999999999998765 32  57999998853

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.22  E-value=1.2e-10  Score=106.79  Aligned_cols=131  Identities=18%  Similarity=0.116  Sum_probs=94.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      +.+|||||||+|.+...|+.  ++.+|+|+|+++.+++.|++++...+ ...++.++.+|..+                 
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-----------------  126 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSP-KAEYFSFVKEDVFT-----------------  126 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSG-GGGGEEEECCCTTT-----------------
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccC-CCcceEEEECchhc-----------------
Confidence            35999999999999887764  67899999999999999999998765 55679998887532                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         +     ...++||+|+|+..+..-..             .     
T Consensus       127 -----------------------------------~-----~~~~~fD~v~~~~~l~~~~~-------------~-----  148 (235)
T 3lcc_A          127 -----------------------------------W-----RPTELFDLIFDYVFFCAIEP-------------E-----  148 (235)
T ss_dssp             -----------------------------------C-----CCSSCEEEEEEESSTTTSCG-------------G-----
T ss_pred             -----------------------------------C-----CCCCCeeEEEEChhhhcCCH-------------H-----
Confidence                                               0     02358999999876553210             0     


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEe-cCC---------CCHHHHHHHHHHcCCeEEEEEEe
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMV-GRK---------SNLKFLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~v-gk~---------~~l~~l~~~L~~~g~~~v~~~e~  330 (384)
                            -...++++..++++++|++.+.. ...         -+.+++.++|++.||..+.+...
T Consensus       149 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  207 (235)
T 3lcc_A          149 ------MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEEN  207 (235)
T ss_dssp             ------GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred             ------HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence                  13345566666777777765432 211         25789999999999987776554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.22  E-value=3e-10  Score=106.37  Aligned_cols=60  Identities=18%  Similarity=0.201  Sum_probs=53.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++...++.+++|+|+++.+++.|++++..++ +. ++.++.+|.
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~d~   96 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG-IK-NVKFLQANI   96 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEECCG
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-CcEEEEccc
Confidence            4569999999999999999988888999999999999999999999887 54 588888774

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.22  E-value=2.8e-10  Score=107.94  Aligned_cols=75  Identities=20%  Similarity=0.219  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~  170 (384)
                      ..++.++.+.+...        ....+|||||||+|..+..++..++ +.+++|+|+|+.+++.|++++...+ .  +++
T Consensus         7 ~~~~~~~~~~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~--~v~   75 (284)
T 3gu3_A            7 DDYVSFLVNTVWKI--------TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-Y--DSE   75 (284)
T ss_dssp             HHHHHHHHHTTSCC--------CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-S--EEE
T ss_pred             hHHHHHHHHHHhcc--------CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-C--ceE
Confidence            35666666655321        2457999999999999999988877 5899999999999999999998775 3  689


Q ss_pred             EEEcCCC
Q 016734          171 IRKVDNS  177 (384)
Q Consensus       171 ~~~~d~~  177 (384)
                      ++.+|..
T Consensus        76 ~~~~d~~   82 (284)
T 3gu3_A           76 FLEGDAT   82 (284)
T ss_dssp             EEESCTT
T ss_pred             EEEcchh
Confidence            9888743

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.21  E-value=3.7e-10  Score=121.36  Aligned_cols=79  Identities=19%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-------------------------------
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-------------------------------  137 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-------------------------------  137 (384)
                      |-++++...+..+..-         .....+||.+||||.+.+.++...                               
T Consensus       173 pl~e~LAa~ll~~~~~---------~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~e  243 (703)
T 3v97_A          173 PIKETLAAAIVMRSGW---------QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAE  243 (703)
T ss_dssp             SSCHHHHHHHHHHTTC---------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCC---------CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHH
Confidence            7788877776665432         134579999999999988766532                               


Q ss_pred             -----------cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          138 -----------LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       138 -----------~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                                 +..+++|+|+|+.|++.|+.|++.++ +.+.|.+.++|..
T Consensus       244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~ag-v~~~i~~~~~D~~  293 (703)
T 3v97_A          244 AQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAG-IGELITFEVKDVA  293 (703)
T ss_dssp             HHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEECCGG
T ss_pred             HHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECChh
Confidence                       23589999999999999999999998 8888999998853

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.20  E-value=1.1e-09  Score=103.85  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHh----ccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           92 SNYIHWIEDLL----SSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        92 ~~yi~~i~dll----~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      ...+.++.+.+    ..         ....+|||||||+|.+...++... +.+++|+|+++.+++.|++++...+ +.+
T Consensus        64 ~~~~~~l~~~l~~~~~~---------~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~  132 (297)
T 2o57_A           64 LRTDEWLASELAMTGVL---------QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG-LAD  132 (297)
T ss_dssp             HHHHHHHHHHHHHTTCC---------CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT-CTT
T ss_pred             HHHHHHHHHHhhhccCC---------CCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcC-CCc
Confidence            44556666666    21         234689999999999998888765 6799999999999999999999887 777


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      ++.++.+|.
T Consensus       133 ~~~~~~~d~  141 (297)
T 2o57_A          133 NITVKYGSF  141 (297)
T ss_dssp             TEEEEECCT
T ss_pred             ceEEEEcCc
Confidence            899998874

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.19  E-value=9.8e-10  Score=102.16  Aligned_cols=58  Identities=19%  Similarity=0.204  Sum_probs=49.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...|+...  .+++|+|+++.+++.|++++..++ +. ++.++.+|.
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~~-~v~~~~~d~   94 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG-HQ-QVEYVQGDA   94 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEECCC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcC-CC-ceEEEEecH
Confidence            35689999999999988887654  499999999999999999999886 54 689988874

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.19  E-value=4.9e-10  Score=103.49  Aligned_cols=58  Identities=22%  Similarity=0.240  Sum_probs=49.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.++..++... +.+++|+|+|+.+++.|++++...    .++.++.+|..
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~  112 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN----NKIIFEANDIL  112 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEECccc
Confidence            35699999999999999998776 789999999999999999887543    46999988753

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.19  E-value=5.1e-10  Score=107.56  Aligned_cols=61  Identities=11%  Similarity=0.177  Sum_probs=54.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.++..++... +.+|+|+|+++.+++.|++|++.++ +.+++.++.+|..
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~  177 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELR-IDDHVRSRVCNML  177 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC-CCCceEEEECChh
Confidence            35689999999999998888765 7899999999999999999999998 8888999998853

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.19  E-value=2.6e-10  Score=105.29  Aligned_cols=60  Identities=10%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|..+..++...++.+|+|+|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~  131 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH-FENQVRIIEGNA  131 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCG
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCH
Confidence            458999999999999999987778999999999999999999999998 888899999874

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.17  E-value=2.2e-10  Score=111.45  Aligned_cols=148  Identities=11%  Similarity=0.046  Sum_probs=99.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|..+..|+...+ ..+|+|+|+++.+++.|++|+++++ +. +|.++.+|..+               
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-~~-~v~~~~~D~~~---------------  180 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-VL-NVILFHSSSLH---------------  180 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-CC-SEEEESSCGGG---------------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-CC-eEEEEECChhh---------------
Confidence            346899999999999999998764 4799999999999999999999987 65 48888776321               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                            +..   ..++||+|+||||+....... ..|.....-+...+
T Consensus       181 --------------------------------------~~~---~~~~fD~Il~d~Pcsg~g~~~-~~p~~~~~~~~~~~  218 (315)
T 1ixk_A          181 --------------------------------------IGE---LNVEFDKILLDAPCTGSGTIH-KNPERKWNRTMDDI  218 (315)
T ss_dssp             --------------------------------------GGG---GCCCEEEEEEECCTTSTTTCC---------CCHHHH
T ss_pred             --------------------------------------ccc---ccccCCEEEEeCCCCCccccc-CChhHhhcCCHHHH
Confidence                                                  000   145799999999986543211 12211100000000


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEE---EecCCCCHHHHHHHHHHcCCeE
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTS---MVGRKSNLKFLISKLRKVGVTI  324 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~---~vgk~~~l~~l~~~L~~~g~~~  324 (384)
                         ..-......+++++..+++.+|.+..   .+...++...+...|++.++..
T Consensus       219 ---~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~  269 (315)
T 1ixk_A          219 ---KFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL  269 (315)
T ss_dssp             ---HHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred             ---HHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEE
Confidence               00134456788888888888886533   3555667777788888887643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.17  E-value=6e-10  Score=97.58  Aligned_cols=127  Identities=15%  Similarity=0.138  Sum_probs=90.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|.+...++..  +.+++|+|+++.+++.|+++..       ++.++.+|..+                 
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~-------~~~~~~~d~~~-----------------  100 (195)
T 3cgg_A           47 GAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP-------EARWVVGDLSV-----------------  100 (195)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTT-----------------
T ss_pred             CCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC-------CCcEEEccccc-----------------
Confidence            458999999999998888765  6799999999999999998752       36777776431                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         +  .+  ..++||+|+|||+.+.....                  
T Consensus       101 -----------------------------------~--~~--~~~~~D~i~~~~~~~~~~~~------------------  123 (195)
T 3cgg_A          101 -----------------------------------D--QI--SETDFDLIVSAGNVMGFLAE------------------  123 (195)
T ss_dssp             -----------------------------------S--CC--CCCCEEEEEECCCCGGGSCH------------------
T ss_pred             -----------------------------------C--CC--CCCceeEEEECCcHHhhcCh------------------
Confidence                                               0  00  24679999999876643210                  


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCC--CCHHHHHHHHHHcCCeEEEEEEe
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRK--SNLKFLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~--~~l~~l~~~L~~~g~~~v~~~e~  330 (384)
                           .-...++++...+++.+|.+....+..  .+...+.+.|++.|+..+.+...
T Consensus       124 -----~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          124 -----DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             -----HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             -----HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence                 012455566667777788766555433  36899999999999986665443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.17  E-value=5.4e-10  Score=102.01  Aligned_cols=75  Identities=5%  Similarity=0.038  Sum_probs=62.8

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |....++.++....            ...+|||||||+|..+..++...+ +.+|+|+|+++.+++.|++|++.++ +.+
T Consensus        44 ~~~~~~l~~l~~~~------------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~  110 (221)
T 3u81_A           44 DAKGQIMDAVIREY------------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG-LQD  110 (221)
T ss_dssp             HHHHHHHHHHHHHH------------CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGG
T ss_pred             HHHHHHHHHHHHhc------------CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC-CCC
Confidence            56666666655443            245899999999999999988764 7899999999999999999999998 888


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      +|+++.+|.
T Consensus       111 ~v~~~~~d~  119 (221)
T 3u81_A          111 KVTILNGAS  119 (221)
T ss_dssp             GEEEEESCH
T ss_pred             ceEEEECCH
Confidence            899999874

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.17  E-value=1.3e-09  Score=102.77  Aligned_cols=59  Identities=10%  Similarity=0.050  Sum_probs=51.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ...+|||||||+|.++..++... +.+|+|+|+|+.+++.|++++...+ +.+++.++.+|
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~-~~~~~~~~~~d  122 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAG  122 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESC
T ss_pred             CcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC-CCCCeEEEECC
Confidence            34689999999999988888665 5699999999999999999999887 77789998876

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.16  E-value=1.1e-10  Score=115.84  Aligned_cols=88  Identities=11%  Similarity=0.175  Sum_probs=68.1

Q ss_pred             cEEEecCCCccCCCcC-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHH
Q 016734           75 LNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE  153 (384)
Q Consensus        75 l~~~vp~~~LiPrvP~-r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~  153 (384)
                      +.|.++++.+....|. .+.++.|+.+.+..          ...+|||+|||+|.+++.|+..  ..+|+|+|+++.|++
T Consensus       182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~----------~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~  249 (369)
T 3bt7_A          182 MIYRQVENSFTQPNAAMNIQMLEWALDVTKG----------SKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVA  249 (369)
T ss_dssp             CEEEEETTSCCCSBHHHHHHHHHHHHHHTTT----------CCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHH
T ss_pred             EEEEECCCCeecCCHHHHHHHHHHHHHHhhc----------CCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHH
Confidence            4566667666655333 36677778777642          2357999999999999888753  459999999999999


Q ss_pred             HHHHHHHHCCCCCCceEEEEcCC
Q 016734          154 WAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       154 ~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .|++|++.|+ +. +++++.+|.
T Consensus       250 ~a~~n~~~ng-~~-~v~~~~~d~  270 (369)
T 3bt7_A          250 AAQYNIAANH-ID-NVQIIRMAA  270 (369)
T ss_dssp             HHHHHHHHTT-CC-SEEEECCCS
T ss_pred             HHHHHHHHcC-CC-ceEEEECCH
Confidence            9999999998 64 799998874

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.16  E-value=1.4e-09  Score=99.33  Aligned_cols=54  Identities=22%  Similarity=0.320  Sum_probs=46.7

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+|||||||+|.++..++..   .+++|+|+++.+++.|++++..++   .++.++.+|.
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~   88 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN---RHVDFWVQDM   88 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCG
T ss_pred             CeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC---CceEEEEcCh
Confidence            68999999999998887765   799999999999999999998775   3588888763

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.16  E-value=3.4e-10  Score=104.25  Aligned_cols=133  Identities=10%  Similarity=0.014  Sum_probs=92.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||||||+|.++..|+... ..+++|+|+++.+++.|++++..++  ..++.++.+|..+                
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~d~~~----------------  139 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG--KRVRNYFCCGLQD----------------  139 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG--GGEEEEEECCGGG----------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC--CceEEEEEcChhh----------------
Confidence            35699999999999988877665 5699999999999999999987763  2358888776321                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                              +...+++||+|+|+-.+..-.+                  
T Consensus       140 ----------------------------------------~~~~~~~fD~v~~~~~l~~~~~------------------  161 (241)
T 2ex4_A          140 ----------------------------------------FTPEPDSYDVIWIQWVIGHLTD------------------  161 (241)
T ss_dssp             ----------------------------------------CCCCSSCEEEEEEESCGGGSCH------------------
T ss_pred             ----------------------------------------cCCCCCCEEEEEEcchhhhCCH------------------
Confidence                                                    0012458999999843321100                  


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEe-cC-------------CCCHHHHHHHHHHcCCeEEEEEEe
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMV-GR-------------KSNLKFLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~v-gk-------------~~~l~~l~~~L~~~g~~~v~~~e~  330 (384)
                            .-+..++++..++++.+|++.+.. ..             ..+.+++.++|+++|+..+.+...
T Consensus       162 ------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  225 (241)
T 2ex4_A          162 ------QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ  225 (241)
T ss_dssp             ------HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ------HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence                  013455666677777777764421 10             116899999999999987776543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.16  E-value=2.1e-10  Score=104.28  Aligned_cols=75  Identities=19%  Similarity=0.259  Sum_probs=62.9

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |....++.++....            ...+|||||||+|..+..++...+ +.+++|+|+++.+++.|+++++.++ +.+
T Consensus        50 ~~~~~~l~~l~~~~------------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~  116 (225)
T 3tr6_A           50 PEQAQLLALLVKLM------------QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG-LSD  116 (225)
T ss_dssp             HHHHHHHHHHHHHH------------TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT-CTT
T ss_pred             HHHHHHHHHHHHhh------------CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCC
Confidence            55666666655543            235899999999999999998877 7899999999999999999999998 888


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      +|+++.+|.
T Consensus       117 ~v~~~~~d~  125 (225)
T 3tr6_A          117 KIGLRLSPA  125 (225)
T ss_dssp             TEEEEESCH
T ss_pred             ceEEEeCCH
Confidence            899998874

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.16  E-value=7.3e-10  Score=106.33  Aligned_cols=60  Identities=12%  Similarity=0.051  Sum_probs=52.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..++... +++|+|+|+|+.+++.|++++...+ +.+++.++.+|.
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~  149 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQGW  149 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCG
T ss_pred             CcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCh
Confidence            34689999999999998888765 7799999999999999999999887 777899988763

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.16  E-value=1.4e-09  Score=99.94  Aligned_cols=59  Identities=10%  Similarity=-0.099  Sum_probs=50.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||+|||+|.++..|+...+..+|+|+|+++.+++.|++|++.+    .++.++.+|..
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~~  132 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDAN  132 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTT
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCCC
Confidence            346899999999999999988766679999999999999999998655    36888888743

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.15  E-value=1.4e-10  Score=110.90  Aligned_cols=49  Identities=14%  Similarity=0.159  Sum_probs=42.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      ...+|||||||+|.+...|+..+++.+|+|+|+|+.+++.|++++..++
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~   94 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYL   94 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhh
Confidence            3568999999999999999998888999999999999999999987653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.15  E-value=5.8e-10  Score=102.47  Aligned_cols=58  Identities=9%  Similarity=-0.076  Sum_probs=49.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||+|||+|.++..|+... ++.+|+|+|+++.+++.+.++++.+.    ++.++.+|..
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~----~v~~~~~d~~  136 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRT----NIIPVIEDAR  136 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCT----TEEEECSCTT
T ss_pred             CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccC----CeEEEEcccC
Confidence            4589999999999999998876 56899999999999999999988763    5888887743

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.14  E-value=7.6e-10  Score=100.57  Aligned_cols=60  Identities=18%  Similarity=0.190  Sum_probs=55.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|..+..++...+ +.+++|+|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~  119 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN-LNDRVEVRTGLA  119 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCH
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence            46899999999999999998877 7899999999999999999999998 888899999874

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.14  E-value=3e-10  Score=115.41  Aligned_cols=61  Identities=16%  Similarity=0.023  Sum_probs=49.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-------------cCCEEEEEeCcHHHHHHHHHHHHHCCCCCC-ceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-------------LGWSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-------------~~~~v~gvDid~~al~~A~~Ni~~n~~l~~-~I~~~~~d~  176 (384)
                      ...+|||+|||||.+.+.++...             ...+++|+|+++.+++.|+.|+..++ +.. .+.++++|.
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g-~~~~~~~i~~gD~  245 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG-IGTDRSPIVCEDS  245 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT-CCSSCCSEEECCT
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC-CCcCCCCEeeCCC
Confidence            34589999999999987777653             34689999999999999999999887 542 567777764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.14  E-value=1.4e-09  Score=96.98  Aligned_cols=132  Identities=9%  Similarity=-0.024  Sum_probs=91.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|.+...|+..  +.+++|+|+++.+++.|+++.       .++.++.+|..+                 
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~-----------------   95 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH-------PSVTFHHGTITD-----------------   95 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC-------TTSEEECCCGGG-----------------
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-------CCCeEEeCcccc-----------------
Confidence            458999999999998888765  679999999999999999872       147777766321                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                             +...+++||+|+|+-.+.....             +     
T Consensus        96 ---------------------------------------~~~~~~~fD~v~~~~~l~~~~~-------------~-----  118 (203)
T 3h2b_A           96 ---------------------------------------LSDSPKRWAGLLAWYSLIHMGP-------------G-----  118 (203)
T ss_dssp             ---------------------------------------GGGSCCCEEEEEEESSSTTCCT-------------T-----
T ss_pred             ---------------------------------------cccCCCCeEEEEehhhHhcCCH-------------H-----
Confidence                                                   0113578999999864442110             0     


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCC---------------CCHHHHHHHHHHcCCeEEEEEEeeCCCeeE
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRK---------------SNLKFLISKLRKVGVTIVKTTEFVQGQTCR  337 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~---------------~~l~~l~~~L~~~g~~~v~~~e~~qG~t~R  337 (384)
                            -...++++..++++.+|++.......               -+.+++.++|++.|++.+.+... .+....
T Consensus       119 ------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-~~~p~~  188 (203)
T 3h2b_A          119 ------ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWD-PRFPHA  188 (203)
T ss_dssp             ------THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEEC-TTSSEE
T ss_pred             ------HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEec-CCCcch
Confidence                  13455566667778888765443211               35899999999999987666554 344343

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.13  E-value=2.2e-10  Score=116.27  Aligned_cols=88  Identities=20%  Similarity=0.299  Sum_probs=71.9

Q ss_pred             cCCcEEEecCCCccCCC-cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           72 DHGLNWWIPDGQLCPTV-PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrv-P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      ..|+.|.++++.+.... ..++.++.++.+ +.           ...+|||+|||+|.+++.|+..  +.+|+|+|+++.
T Consensus       258 ~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~~-----------~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~  323 (425)
T 2jjq_A          258 LDDVDYLIHPNSFFQTNSYQAVNLVRKVSE-LV-----------EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEF  323 (425)
T ss_dssp             ETTEEEEECTTSCCCSBHHHHHHHHHHHHH-HC-----------CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHH
T ss_pred             ECCEEEEEccccccccCHHHHHHHHHHhhc-cC-----------CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHH
Confidence            46899999999887542 345667777776 32           2458999999999999988864  569999999999


Q ss_pred             HHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          151 ALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       151 al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      |++.|++|++.|+ +.  ++++.+|.
T Consensus       324 ai~~A~~n~~~ng-l~--v~~~~~d~  346 (425)
T 2jjq_A          324 AIEMARRNVEINN-VD--AEFEVASD  346 (425)
T ss_dssp             HHHHHHHHHHHHT-CC--EEEEECCT
T ss_pred             HHHHHHHHHHHcC-Cc--EEEEECCh
Confidence            9999999999997 65  89998874

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.13  E-value=1.5e-09  Score=102.36  Aligned_cols=56  Identities=16%  Similarity=0.218  Sum_probs=49.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.++..|+..  +.+|+|+|+|+.+++.|++++..++ +  ++.++.+|.
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~  176 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKEN-L--NISTALYDI  176 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-C--CEEEEECCG
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEecc
Confidence            468999999999999888866  6799999999999999999999987 5  689988874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.13  E-value=6e-10  Score=104.71  Aligned_cols=130  Identities=13%  Similarity=0.089  Sum_probs=97.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHC-CCCCCceEEEEcCCCCCCCcccccccCCcc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDNSESTPSIQESLTGKSV  192 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n-~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~  192 (384)
                      ...+|||+|||+|.++..++... ++.+++|+|+++.+++.|++|++.+ +.+.+++.++.+|..+              
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~--------------  164 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD--------------  164 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG--------------
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh--------------
Confidence            34589999999999998888754 5789999999999999999999876 3245678888776421              


Q ss_pred             ccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccc
Q 016734          193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE  272 (384)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E  272 (384)
                                                            .  .+  .++.||+|+||+|-          |.         
T Consensus       165 --------------------------------------~--~~--~~~~~D~v~~~~~~----------~~---------  183 (280)
T 1i9g_A          165 --------------------------------------S--EL--PDGSVDRAVLDMLA----------PW---------  183 (280)
T ss_dssp             --------------------------------------C--CC--CTTCEEEEEEESSC----------GG---------
T ss_pred             --------------------------------------c--CC--CCCceeEEEECCcC----------HH---------
Confidence                                                  0  00  24579999998761          10         


Q ss_pred             ccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHH-cCCeEEEEEEee
Q 016734          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK-VGVTIVKTTEFV  331 (384)
Q Consensus       273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~-~g~~~v~~~e~~  331 (384)
                                  .++++..++++.+|++.+......++..+.+.|++ .++..+++.+..
T Consensus       184 ------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~~~  231 (280)
T 1i9g_A          184 ------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETL  231 (280)
T ss_dssp             ------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECCC
T ss_pred             ------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEEEEEe
Confidence                        22455566778888887777766778888888887 788777776654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.13  E-value=5.6e-10  Score=106.09  Aligned_cols=145  Identities=12%  Similarity=0.039  Sum_probs=94.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|..+..++...++ .+|+|+|+++.+++.|++|++.++ +. ++.++.+|..+               
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g-~~-~v~~~~~D~~~---------------  145 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG-VL-NTIIINADMRK---------------  145 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEESCHHH---------------
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC-CC-cEEEEeCChHh---------------
Confidence            3458999999999999999987766 799999999999999999999997 65 68998887321               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                           +...+....++||+|+|||||....... ..|...    ...+
T Consensus       146 -------------------------------------~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~-~~p~~~----~~~~  183 (274)
T 3ajd_A          146 -------------------------------------YKDYLLKNEIFFDKILLDAPCSGNIIKD-KNRNVS----EEDI  183 (274)
T ss_dssp             -------------------------------------HHHHHHHTTCCEEEEEEEECCC-----------------HHHH
T ss_pred             -------------------------------------cchhhhhccccCCEEEEcCCCCCCcccc-cCCCCC----HHHH
Confidence                                                 0000000246799999999997643211 112100    0000


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEE---EecCCCCHHHHHHHHHHcC
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTS---MVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~---~vgk~~~l~~l~~~L~~~g  321 (384)
                       .  .-.....++++++..+++.+|.+..   -+...++-..+...|+++.
T Consensus       184 -~--~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~  231 (274)
T 3ajd_A          184 -K--YCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRN  231 (274)
T ss_dssp             -T--GGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCS
T ss_pred             -H--HHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCC
Confidence             0  0023456778888888888886533   3444566666777776653

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.13  E-value=1.2e-09  Score=99.73  Aligned_cols=142  Identities=17%  Similarity=0.203  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      ...+.++...+.           ...+|||||||+|.++..++..  +.+++|+|+++.+++.|+++..     ..++.+
T Consensus        41 ~~~~~~l~~~~~-----------~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~  102 (242)
T 3l8d_A           41 STIIPFFEQYVK-----------KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGE-----GPDLSF  102 (242)
T ss_dssp             TTHHHHHHHHSC-----------TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTC-----BTTEEE
T ss_pred             HHHHHHHHHHcC-----------CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcc-----cCCceE
Confidence            345556665543           2458999999999998888765  7799999999999999988752     246889


Q ss_pred             EEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCc
Q 016734          172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF  251 (384)
Q Consensus       172 ~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy  251 (384)
                      +.+|..+                                                     +   ...+++||+|+|+-.+
T Consensus       103 ~~~d~~~-----------------------------------------------------~---~~~~~~fD~v~~~~~l  126 (242)
T 3l8d_A          103 IKGDLSS-----------------------------------------------------L---PFENEQFEAIMAINSL  126 (242)
T ss_dssp             EECBTTB-----------------------------------------------------C---SSCTTCEEEEEEESCT
T ss_pred             EEcchhc-----------------------------------------------------C---CCCCCCccEEEEcChH
Confidence            8887431                                                     0   0025789999998655


Q ss_pred             ccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEe-c--------------------CCCCH
Q 016734          252 FESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMV-G--------------------RKSNL  310 (384)
Q Consensus       252 ~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~v-g--------------------k~~~l  310 (384)
                      ....+                          ...++++..++++++|++.... +                    ..-+.
T Consensus       127 ~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (242)
T 3l8d_A          127 EWTEE--------------------------PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMP  180 (242)
T ss_dssp             TSSSC--------------------------HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCH
T ss_pred             hhccC--------------------------HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCH
Confidence            43210                          1244555566667777654433 1                    11345


Q ss_pred             HHHHHHHHHcCCeEEEEEEeeCC
Q 016734          311 KFLISKLRKVGVTIVKTTEFVQG  333 (384)
Q Consensus       311 ~~l~~~L~~~g~~~v~~~e~~qG  333 (384)
                      .++.++|+++|++.+.+..+..+
T Consensus       181 ~~~~~~l~~~Gf~~~~~~~~~~~  203 (242)
T 3l8d_A          181 WEFEQLVKEQGFKVVDGIGVYKR  203 (242)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEECT
T ss_pred             HHHHHHHHHcCCEEEEeeccccc
Confidence            78999999999998887766544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.13  E-value=2.9e-10  Score=116.76  Aligned_cols=145  Identities=10%  Similarity=0.029  Sum_probs=101.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|..+..|+...++ .+|+|+|+|+.+++.|++|+++++ +.  |.++.+|..+               
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-~~--v~~~~~Da~~---------------  162 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG-AP--LAVTQAPPRA---------------  162 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-CC--CEEECSCHHH---------------
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-Ce--EEEEECCHHH---------------
Confidence            3568999999999999999988764 699999999999999999999998 65  8887766321               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                            +...  ..++||+|+||||+....... ..|.....-+...+
T Consensus       163 --------------------------------------l~~~--~~~~FD~Il~D~PcSg~G~~r-r~pd~~~~~~~~~~  201 (464)
T 3m6w_A          163 --------------------------------------LAEA--FGTYFHRVLLDAPCSGEGMFR-KDREAARHWGPSAP  201 (464)
T ss_dssp             --------------------------------------HHHH--HCSCEEEEEEECCCCCGGGTT-TCTTSGGGCCTTHH
T ss_pred             --------------------------------------hhhh--ccccCCEEEECCCcCCccccc-cChHHhhhcCHHHH
Confidence                                                  1100  146899999999997543221 23332211111100


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEE---EEecCCCCHHHHHHHHHHcC
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t---~~vgk~~~l~~l~~~L~~~g  321 (384)
                      .   .-.....++++++..+++.+|.+.   |-+...++-+.+...|++++
T Consensus       202 ~---~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~  249 (464)
T 3m6w_A          202 K---RMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHP  249 (464)
T ss_dssp             H---HHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             H---HHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCC
Confidence            0   012445778999999988888653   45566677888888888873

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.12  E-value=5.5e-10  Score=102.48  Aligned_cols=60  Identities=22%  Similarity=0.169  Sum_probs=54.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|..+..++...++.+|+|+|+++.+++.|++|++.++ +.++|.++.+|.
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~  114 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG-LESRIELLFGDA  114 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCG
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCH
Confidence            458999999999999999988888999999999999999999999997 777899988763

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.12  E-value=8.3e-10  Score=102.08  Aligned_cols=56  Identities=14%  Similarity=0.168  Sum_probs=46.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..++...+. +++|+|+++.+++.|++++.     ..++.++.+|.
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~d~   99 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT-----SPVVCYEQKAI   99 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC-----CTTEEEEECCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc-----cCCeEEEEcch
Confidence            4579999999999998888876433 99999999999999999875     23688888874

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.12  E-value=6.9e-10  Score=105.98  Aligned_cols=136  Identities=10%  Similarity=0.115  Sum_probs=92.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH--CCCC-CCceEEEEcCCCCCCCcccccccCCc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS--NPHI-SELIEIRKVDNSESTPSIQESLTGKS  191 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~--n~~l-~~~I~~~~~d~~~~~p~~~~~~~~~~  191 (384)
                      .+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++|+..  ++ + .++++++.+|..+             
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~-~~~~rv~v~~~D~~~-------------  140 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFM-------------  140 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHH-------------
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHH-------------
Confidence            35689999999999988887654567999999999999999999854  23 3 4589999887421             


Q ss_pred             cccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcc
Q 016734          192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPE  271 (384)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~  271 (384)
                                                             .+   ....++||+|+||+|+...       |.       .
T Consensus       141 ---------------------------------------~l---~~~~~~fD~Ii~d~~~~~~-------~~-------~  164 (275)
T 1iy9_A          141 ---------------------------------------HI---AKSENQYDVIMVDSTEPVG-------PA-------V  164 (275)
T ss_dssp             ---------------------------------------HH---HTCCSCEEEEEESCSSCCS-------CC-------C
T ss_pred             ---------------------------------------HH---hhCCCCeeEEEECCCCCCC-------cc-------h
Confidence                                                   11   1124689999999986321       10       0


Q ss_pred             cccccCchHHHHHHHHHHHHHhhccCeEEEEEecCC----CCHHHHHHHHHHcCCeEEEEEE
Q 016734          272 EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK----SNLKFLISKLRKVGVTIVKTTE  329 (384)
Q Consensus       272 E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~----~~l~~l~~~L~~~g~~~v~~~e  329 (384)
                      .+        +...++++..+.++.+|++.+..+..    ..+..+.+.|++. |..+....
T Consensus       165 ~l--------~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~  217 (275)
T 1iy9_A          165 NL--------FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLYT  217 (275)
T ss_dssp             CC--------STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             hh--------hHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeEEEE
Confidence            00        11233445567788999988776532    2256667777776 55566543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.12  E-value=1.6e-09  Score=104.48  Aligned_cols=61  Identities=15%  Similarity=0.096  Sum_probs=55.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||+|||+|.++..++..+++.+++++|++ .+++.|++++..++ +.++|+++.+|..
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~-~~~~v~~~~~d~~  225 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG-VASRYHTIAGSAF  225 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT-CGGGEEEEESCTT
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC-CCcceEEEecccc
Confidence            3569999999999999999988899999999999 99999999999887 7788999998753

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.11  E-value=8.6e-10  Score=102.56  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=53.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC--------CCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN--------PHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n--------~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.++..++...+.++|+|+|+++.+++.|++|++.+        + +. ++.++.+|..
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~-nv~~~~~D~~  117 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG-FQ-NINVLRGNAM  117 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST-TT-TEEEEECCTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC-CC-cEEEEeccHH
Confidence            346899999999999999998888899999999999999999999876        5 43 6999988753

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.11  E-value=1.9e-09  Score=99.24  Aligned_cols=130  Identities=12%  Similarity=0.019  Sum_probs=91.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||||||+|.++..|+... ..+++|+|+++.+++.|++++..+    .++.++.+|..+                
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~----------------  151 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMET----------------  151 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGG----------------
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHH----------------
Confidence            45699999999999998888765 568999999999999999987654    368888876421                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                           + .+  ..++||+|+|+-.+..-..                  
T Consensus       152 -------------------------------------~-~~--~~~~fD~v~~~~~l~~~~~------------------  173 (254)
T 1xtp_A          152 -------------------------------------A-TL--PPNTYDLIVIQWTAIYLTD------------------  173 (254)
T ss_dssp             -------------------------------------C-CC--CSSCEEEEEEESCGGGSCH------------------
T ss_pred             -------------------------------------C-CC--CCCCeEEEEEcchhhhCCH------------------
Confidence                                                 0 00  2468999999865432110                  


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEec---------------CCCCHHHHHHHHHHcCCeEEEEEE
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVG---------------RKSNLKFLISKLRKVGVTIVKTTE  329 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg---------------k~~~l~~l~~~L~~~g~~~v~~~e  329 (384)
                            .-...++++..++++.+|++.....               ...+.+.+.++|+++|+..+++..
T Consensus       174 ------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  237 (254)
T 1xtp_A          174 ------ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             ------HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             ------HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence                  1134555666667777776644331               012568999999999998777654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.11  E-value=9.8e-10  Score=102.68  Aligned_cols=60  Identities=17%  Similarity=0.239  Sum_probs=52.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHH------HHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDV------ALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~------al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ...+|||||||+|.++..++... +..+++|+|+++.      +++.|+++++.++ +.++|.++.+|
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~-~~~~v~~~~~d  109 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP-LGDRLTVHFNT  109 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST-TGGGEEEECSC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC-CCCceEEEECC
Confidence            34689999999999999998875 6689999999997      9999999999887 77789998876

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.11  E-value=3.2e-10  Score=110.72  Aligned_cols=170  Identities=15%  Similarity=0.045  Sum_probs=107.5

Q ss_pred             cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      .||..+.+...+.+++ +....|-+.+..+.....       ..+.+|||||||+|.++..++...+..+++++|+|+.+
T Consensus        73 ~~g~~l~ldg~~q~~~-~de~~Y~e~l~~l~l~~~-------~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~  144 (314)
T 2b2c_A           73 TYGNVLVLDGIVQATE-RDEFSYQEMLAHLPMFAH-------PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMV  144 (314)
T ss_dssp             TTEEEEEETTEEEEES-SSSSHHHHHHHHHHHHHS-------SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHH
T ss_pred             CCCEEEEECCEeecCC-cchhHHHHHHHHHHHhhC-------CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHH
Confidence            5777778877777777 554444333332211110       13468999999999999888876667899999999999


Q ss_pred             HHHHHHHHHHC--CCC-CCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCC
Q 016734          152 LEWAEKNVKSN--PHI-SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG  228 (384)
Q Consensus       152 l~~A~~Ni~~n--~~l-~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  228 (384)
                      ++.|++|+...  + + .++++++.+|..+                                                  
T Consensus       145 i~~Ar~~~~~~~~~-~~~~rv~~~~~D~~~--------------------------------------------------  173 (314)
T 2b2c_A          145 IDVAKKFLPGMSCG-FSHPKLDLFCGDGFE--------------------------------------------------  173 (314)
T ss_dssp             HHHHHHHCTTTSGG-GGCTTEEEECSCHHH--------------------------------------------------
T ss_pred             HHHHHHHHHHhccc-cCCCCEEEEEChHHH--------------------------------------------------
Confidence            99999998653  2 3 4578888776321                                                  


Q ss_pred             CCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCC
Q 016734          229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS  308 (384)
Q Consensus       229 ~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~  308 (384)
                        .+   ....++||+|+||+|..-       .|       .        +-.+...+++++.+.++.+|++.+..|...
T Consensus       174 --~l---~~~~~~fD~Ii~d~~~~~-------~~-------~--------~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~  226 (314)
T 2b2c_A          174 --FL---KNHKNEFDVIITDSSDPV-------GP-------A--------ESLFGQSYYELLRDALKEDGILSSQGESVW  226 (314)
T ss_dssp             --HH---HHCTTCEEEEEECCC-----------------------------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred             --HH---HhcCCCceEEEEcCCCCC-------Cc-------c--------hhhhHHHHHHHHHhhcCCCeEEEEECCCcc
Confidence              01   112468999999985210       01       0        001225566677788899999988766322


Q ss_pred             ----CHHHHHHHHHHcCCeEEEEE
Q 016734          309 ----NLKFLISKLRKVGVTIVKTT  328 (384)
Q Consensus       309 ----~l~~l~~~L~~~g~~~v~~~  328 (384)
                          ....+.+.+++. |..+...
T Consensus       227 ~~~~~~~~~~~~l~~v-F~~v~~~  249 (314)
T 2b2c_A          227 LHLPLIAHLVAFNRKI-FPAVTYA  249 (314)
T ss_dssp             TCHHHHHHHHHHHHHH-CSEEEEE
T ss_pred             cCHHHHHHHHHHHHHH-CCcceEE
Confidence                244556666665 4455543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.11  E-value=2.3e-09  Score=105.15  Aligned_cols=60  Identities=10%  Similarity=0.096  Sum_probs=55.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++...++++++++|+ +.+++.|++++..++ +.++|+++.+|.
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~  241 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG-LADRVTVAEGDF  241 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC-CCCceEEEeCCC
Confidence            456999999999999999999889999999999 999999999999987 788899998874

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.10  E-value=9.5e-10  Score=107.99  Aligned_cols=60  Identities=17%  Similarity=0.194  Sum_probs=51.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.++..++.. ...+|+|+|+++ +++.|+++++.++ +.++|+++.+|..
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~-~~~~i~~~~~d~~  123 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNK-LEDTITLIKGKIE  123 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTT-CTTTEEEEESCTT
T ss_pred             CCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcC-CCCcEEEEEeeHH
Confidence            3468999999999998887765 345999999997 9999999999998 8889999998753

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.10  E-value=4.8e-10  Score=102.16  Aligned_cols=75  Identities=15%  Similarity=0.133  Sum_probs=61.5

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |....++..+..+.            ...+|||||||+|..+..++...+ +.+++++|+++.+++.|++|++.++ +.+
T Consensus        55 ~~~~~~l~~l~~~~------------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~  121 (229)
T 2avd_A           55 CEQAQLLANLARLI------------QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEH  121 (229)
T ss_dssp             HHHHHHHHHHHHHT------------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTT
T ss_pred             HHHHHHHHHHHHhc------------CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCC
Confidence            55555665554432            245899999999999999988776 7899999999999999999999998 778


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      +|+++.+|.
T Consensus       122 ~i~~~~~d~  130 (229)
T 2avd_A          122 KIDLRLKPA  130 (229)
T ss_dssp             TEEEEESCH
T ss_pred             eEEEEEcCH
Confidence            899998873

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.10  E-value=1.3e-09  Score=101.48  Aligned_cols=53  Identities=15%  Similarity=0.083  Sum_probs=44.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.+...|+..  +.+++|+|+|+.+++.|+++..       ++.++.+|..
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~~  103 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP-------DAVLHHGDMR  103 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT-------TSEEEECCTT
T ss_pred             CCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-------CCEEEECChH
Confidence            468999999999998888765  5699999999999999998743       4788888743

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.09  E-value=1.8e-09  Score=101.49  Aligned_cols=61  Identities=15%  Similarity=0.084  Sum_probs=51.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.+...++.. +..+++|+|+++.+++.|++++...+ +..++.++.+|..
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~  124 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSY  124 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC-CCccEEEEECCcc
Confidence            3468999999999888777654 44599999999999999999999886 6678999988753

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.09  E-value=1.2e-09  Score=102.06  Aligned_cols=60  Identities=12%  Similarity=0.107  Sum_probs=55.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|..+..++...+ +.+|+|+|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~  124 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG-VDQRVTLREGPA  124 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCH
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence            46899999999999999998887 7899999999999999999999998 888999999874

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.08  E-value=7.4e-09  Score=94.38  Aligned_cols=59  Identities=10%  Similarity=-0.010  Sum_probs=50.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||+|||+|.++..++... ++.+|+|+|+++.+++.|++|++.+    .++.++.+|..
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~~  132 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDAT  132 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTT
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccCC
Confidence            34589999999999999998775 4579999999999999999999765    36999988753

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.08  E-value=7.9e-10  Score=99.87  Aligned_cols=156  Identities=12%  Similarity=0.039  Sum_probs=101.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||+|||+|.++..++.+  +.+|+|+|+++.+           . + .++.++++|..+....            
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~-~-~~v~~~~~D~~~~~~~------------   77 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------E-I-AGVRFIRCDIFKETIF------------   77 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------C-C-TTCEEEECCTTSSSHH------------
T ss_pred             CCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------c-C-CCeEEEEccccCHHHH------------
Confidence            3468999999999999888766  7899999999741           1 2 3588999886430000            


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCccccccc--CCCcEEEEEECCCcccchhhhccCCccccCCCccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVR--DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE  272 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~--~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E  272 (384)
                                                         ..+.....  ..++||+|+||+|...+....           .+.
T Consensus        78 -----------------------------------~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~-----------~d~  111 (191)
T 3dou_A           78 -----------------------------------DDIDRALREEGIEKVDDVVSDAMAKVSGIPS-----------RDH  111 (191)
T ss_dssp             -----------------------------------HHHHHHHHHHTCSSEEEEEECCCCCCCSCHH-----------HHH
T ss_pred             -----------------------------------HHHHHHhhcccCCcceEEecCCCcCCCCCcc-----------cCH
Confidence                                               00000010  013899999998653321100           000


Q ss_pred             ccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCC---eeEEEEEEecCCcc
Q 016734          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ---TCRWGLAWSFVPPA  348 (384)
Q Consensus       273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~---t~Rw~~AWsf~~~~  348 (384)
                          ......+..+++.+.++++++|+|.+.+-.......+.+.|+. .|..|++.+...++   ...++||-.|..++
T Consensus       112 ----~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~-~F~~v~~~kP~asR~~s~E~y~v~~~~~~~~  185 (191)
T 3dou_A          112 ----AVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK-NFSSYKISKPPASRGSSSEIYIMFFGFKAEG  185 (191)
T ss_dssp             ----HHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG-GEEEEEEECC------CCEEEEEEEEECCC-
T ss_pred             ----HHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH-hcCEEEEECCCCccCCCceEEEEEeeecccc
Confidence                0024556778888889999999998877766667788888865 47888887776665   47889998887764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.08  E-value=1e-09  Score=98.67  Aligned_cols=41  Identities=22%  Similarity=0.307  Sum_probs=37.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N  158 (384)
                      +.+|||||||+|.+...++..  +++++|+|+++.+++.|+++
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh
Confidence            469999999999998888765  77999999999999999887

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.08  E-value=3.4e-09  Score=97.65  Aligned_cols=58  Identities=17%  Similarity=0.220  Sum_probs=49.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..++...  .+++|+|+++.+++.|++++..++ +. ++.++.+|.
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~-~v~~~~~d~   78 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG-VE-NVRFQQGTA   78 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT-CC-SEEEEECBT
T ss_pred             CCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-CC-CeEEEeccc
Confidence            45689999999999988887654  499999999999999999998886 54 688888874

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.08  E-value=7.1e-10  Score=110.35  Aligned_cols=59  Identities=17%  Similarity=0.201  Sum_probs=51.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..++.. ...+|+|+|++ .+++.|+++++.++ +.++|+++.+|.
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~-~~~~v~~~~~d~  121 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANN-LDHIVEVIEGSV  121 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTT-CTTTEEEEESCG
T ss_pred             CCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcC-CCCeEEEEECch
Confidence            4568999999999998888765 22399999999 99999999999998 888999999874

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.08  E-value=8.7e-10  Score=108.58  Aligned_cols=59  Identities=19%  Similarity=0.288  Sum_probs=51.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.++..++.. +..+|+|+|+++ +++.|+++++.++ +.++|+++.+|..
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~-~~~~v~~~~~d~~  125 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANK-LDHVVTIIKGKVE  125 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT-CTTTEEEEESCTT
T ss_pred             CCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcC-CCCcEEEEECcHH
Confidence            468999999999998888765 456999999995 9999999999998 8889999999854

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.08  E-value=1.1e-09  Score=98.85  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=62.5

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |.+..++.++....            ...+|||||||+|..+..++...+ +.+|+++|+|+.+++.|++|++.++ +.+
T Consensus        42 ~~~~~~l~~l~~~~------------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~  108 (210)
T 3c3p_A           42 RQTGRLLYLLARIK------------QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG-LID  108 (210)
T ss_dssp             HHHHHHHHHHHHHH------------CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS-GGG
T ss_pred             HHHHHHHHHHHHhh------------CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCc
Confidence            66666666655433            235899999999999999988776 7899999999999999999999887 777


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      +|+++.+|.
T Consensus       109 ~v~~~~~d~  117 (210)
T 3c3p_A          109 RVELQVGDP  117 (210)
T ss_dssp             GEEEEESCH
T ss_pred             eEEEEEecH
Confidence            899998873

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.08  E-value=4.2e-09  Score=94.85  Aligned_cols=140  Identities=16%  Similarity=0.126  Sum_probs=94.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||||||+|.++..++...  .+++|+|+++.+++.|++++..++    ++.++.+|..+                
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~----------------  108 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWS----HISWAATDILQ----------------  108 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCS----SEEEEECCTTT----------------
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCC----CeEEEEcchhh----------------
Confidence            45689999999999988887653  599999999999999999987653    69999887532                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          +    . ..++||+|+||..++.-.                   
T Consensus       109 ------------------------------------~----~-~~~~fD~v~~~~~l~~~~-------------------  128 (216)
T 3ofk_A          109 ------------------------------------F----S-TAELFDLIVVAEVLYYLE-------------------  128 (216)
T ss_dssp             ------------------------------------C----C-CSCCEEEEEEESCGGGSS-------------------
T ss_pred             ------------------------------------C----C-CCCCccEEEEccHHHhCC-------------------
Confidence                                                0    0 246899999996554321                   


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEe---------cCCCCHHHHHHHHHHcCCeEEEEEEeeCCC-eeEEEEE
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMV---------GRKSNLKFLISKLRKVGVTIVKTTEFVQGQ-TCRWGLA  341 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~v---------gk~~~l~~l~~~L~~~g~~~v~~~e~~qG~-t~Rw~~A  341 (384)
                          ...-+..++++..++++.+|++.+..         ......+.+...+.+. +..++..+...+. ...|+++
T Consensus       129 ----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~l~  200 (216)
T 3ofk_A          129 ----DMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEA-LTEVERVQCQGQSADEDCLLA  200 (216)
T ss_dssp             ----SHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHH-SEEEEEEEEECSSTTCEEEEE
T ss_pred             ----CHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhh-ccceEEEeccCCccccchhHH
Confidence                11224556677777888888876532         2334455666666543 4556655554333 3555554

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.08  E-value=1.2e-09  Score=106.50  Aligned_cols=59  Identities=20%  Similarity=0.240  Sum_probs=50.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.++..++.. ...+|+|+|++ .+++.|+++++.++ +.++|+++.+|..
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~-~~~~i~~~~~d~~   97 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNG-FSDKITLLRGKLE   97 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTT-CTTTEEEEESCTT
T ss_pred             CCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcC-CCCCEEEEECchh
Confidence            458999999999998877764 44599999999 59999999999998 8889999998753

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.07  E-value=3e-10  Score=109.77  Aligned_cols=70  Identities=13%  Similarity=0.043  Sum_probs=52.5

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEE
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK  173 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~  173 (384)
                      .+..+.+.+..         ....+|||||||+|.+...|+..  +.+|+|+|+|+.+++.|++|++.++ + ++++++.
T Consensus        30 i~~~i~~~~~~---------~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~-~-~~v~~~~   96 (299)
T 2h1r_A           30 ILDKIIYAAKI---------KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEG-Y-NNLEVYE   96 (299)
T ss_dssp             HHHHHHHHHCC---------CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTT-C-CCEEC--
T ss_pred             HHHHHHHhcCC---------CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEE
Confidence            45556665532         13458999999999999888765  5799999999999999999998876 5 4688888


Q ss_pred             cCC
Q 016734          174 VDN  176 (384)
Q Consensus       174 ~d~  176 (384)
                      +|.
T Consensus        97 ~D~   99 (299)
T 2h1r_A           97 GDA   99 (299)
T ss_dssp             --C
T ss_pred             Cch
Confidence            874

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.07  E-value=9.6e-10  Score=102.54  Aligned_cols=60  Identities=13%  Similarity=0.200  Sum_probs=51.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH------CCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS------NPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~------n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...|+...+++.|+|+|+++.+++.|+++++.      ++ + .+|.++.+|.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~-~-~nv~~~~~d~  111 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGG-F-QNIACLRSNA  111 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCC-C-TTEEEEECCT
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcC-C-CeEEEEECcH
Confidence            34689999999999999999888999999999999999999999864      33 3 4699998874

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.07  E-value=4.7e-10  Score=106.49  Aligned_cols=71  Identities=13%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      ..+..+.+.+..         ....+|||||||+|.+...|+.+  +.+|+|+|+|+++++.|++++...    ++++++
T Consensus        16 ~i~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~~----~~v~~i   80 (255)
T 3tqs_A           16 FVLQKIVSAIHP---------QKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQQ----KNITIY   80 (255)
T ss_dssp             HHHHHHHHHHCC---------CTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTTC----TTEEEE
T ss_pred             HHHHHHHHhcCC---------CCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhhC----CCcEEE
Confidence            345566666643         23458999999999999888865  479999999999999999998652    369999


Q ss_pred             EcCCCC
Q 016734          173 KVDNSE  178 (384)
Q Consensus       173 ~~d~~~  178 (384)
                      ++|..+
T Consensus        81 ~~D~~~   86 (255)
T 3tqs_A           81 QNDALQ   86 (255)
T ss_dssp             ESCTTT
T ss_pred             EcchHh
Confidence            998653

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.07  E-value=3.3e-10  Score=116.04  Aligned_cols=148  Identities=15%  Similarity=0.067  Sum_probs=102.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|..+..++...++ .+|+|+|+|+.+++.+++|+++++ +. +|.++.+|..+               
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-~~-nv~v~~~Da~~---------------  167 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-VS-NAIVTNHAPAE---------------  167 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-CS-SEEEECCCHHH---------------
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-ceEEEeCCHHH---------------
Confidence            3468999999999999999987664 699999999999999999999998 65 48887766321               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                            +...  ..+.||+|+||||+....... .+|.....-+...+
T Consensus       168 --------------------------------------l~~~--~~~~FD~Il~DaPCSg~G~~r-r~p~~~~~~~~~~~  206 (456)
T 3m4x_A          168 --------------------------------------LVPH--FSGFFDRIVVDAPCSGEGMFR-KDPNAIKEWTEESP  206 (456)
T ss_dssp             --------------------------------------HHHH--HTTCEEEEEEECCCCCGGGTT-TCHHHHHHCCTTHH
T ss_pred             --------------------------------------hhhh--ccccCCEEEECCCCCCccccc-cCHHHhhhcCHHHH
Confidence                                                  1100  146899999999986543211 12221110001000


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcCCe
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVGVT  323 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g~~  323 (384)
                      .   .-.....++++++..+++.+|.+   ||-+...++-..+...|+++++.
T Consensus       207 ~---~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~  256 (456)
T 3m4x_A          207 L---YCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVT  256 (456)
T ss_dssp             H---HHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             H---HHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCE
Confidence            0   01245568899999898888865   34556677888888899998843

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.07  E-value=3.6e-09  Score=94.25  Aligned_cols=170  Identities=11%  Similarity=0.010  Sum_probs=99.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc--CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL--GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~--~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ..+|||||||+|.++..++.+.+  +.+|+|+|+++.+           . + .++.++++|..+.  . ...+.+|+++
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~-~-~~v~~~~~d~~~~--~-~~~~~~~~~i   86 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P-I-PNVYFIQGEIGKD--N-MNNIKNINYI   86 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-C-TTCEEEECCTTTT--S-SCCC------
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-C-CCceEEEccccch--h-hhhhcccccc
Confidence            45899999999999999998877  6899999999831           1 2 3588888886531  1 1134455555


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                      .........                          ..+...+  .+++||+|+||+++.-..... .         +.+ 
T Consensus        87 ~~~~~~~~~--------------------------~~~~~~~--~~~~fD~v~~~~~~~~~g~~~-~---------d~~-  127 (201)
T 2plw_A           87 DNMNNNSVD--------------------------YKLKEIL--QDKKIDIILSDAAVPCIGNKI-D---------DHL-  127 (201)
T ss_dssp             -----CHHH--------------------------HHHHHHH--TTCCEEEEEECCCCCCCSCHH-H---------HHH-
T ss_pred             ccccchhhH--------------------------HHHHhhc--CCCcccEEEeCCCcCCCCCcc-c---------CHH-
Confidence            432110000                          0000001  346899999998654321000 0         000 


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCC---eeEEEEEEecC
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ---TCRWGLAWSFV  345 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~---t~Rw~~AWsf~  345 (384)
                          ........+++++.++++++|++.+.+....+..++...|+. .+..+.+.+...++   ..+|+|+--|.
T Consensus       128 ----~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~-~f~~v~~~~~~~~r~~s~e~y~v~~~~~  197 (201)
T 2plw_A          128 ----NSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG-MFQLVHTTKPKASRNESREIYLVCKNFL  197 (201)
T ss_dssp             ----HHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT-TEEEEEECCCC-----CCEEEEEEEEEC
T ss_pred             ----HHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH-HHheEEEECCcccCCcCceEEEEEecCc
Confidence                012234567888888999999988766656778888888876 46777776666554   35777776654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.06  E-value=3.7e-09  Score=96.40  Aligned_cols=55  Identities=18%  Similarity=0.212  Sum_probs=45.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++..  +. +++|+|+++.+++.|+++...+     ++.++.+|.
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~d~   98 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPDT-----GITYERADL   98 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCSS-----SEEEEECCG
T ss_pred             CCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhcccC-----CceEEEcCh
Confidence            3468999999999998888765  45 9999999999999999876432     588888763

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.05  E-value=1.3e-09  Score=112.26  Aligned_cols=143  Identities=10%  Similarity=0.078  Sum_probs=99.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|..+..|+.... ..+|+|+|+++.+++.|++|+++++ +. +|.++++|..+               
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-~~-nv~~~~~D~~~---------------  179 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG-IS-NVALTHFDGRV---------------  179 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-CC-SEEEECCCSTT---------------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEeCCHHH---------------
Confidence            346899999999999999998765 4799999999999999999999997 65 58888776421               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                            +...  ..+.||.|+||||+....... ..|.....      
T Consensus       180 --------------------------------------~~~~--~~~~fD~Il~D~PcSg~G~~~-~~pd~~~~------  212 (479)
T 2frx_A          180 --------------------------------------FGAA--VPEMFDAILLDAPCSGEGVVR-KDPDALKN------  212 (479)
T ss_dssp             --------------------------------------HHHH--STTCEEEEEEECCCCCGGGGG-TCTTSSSS------
T ss_pred             --------------------------------------hhhh--ccccCCEEEECCCcCCccccc-CCHHHHhh------
Confidence                                                  1110  246799999999997543221 12322110      


Q ss_pred             cccCc--h-HHHHHHHHHHHHHhhccCeEEE---EEecCCCCHHHHHHHHHHcC
Q 016734          274 VCSGG--E-RAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       274 ~~~GG--e-l~Fv~~ii~eS~~l~~~~~w~t---~~vgk~~~l~~l~~~L~~~g  321 (384)
                      +....  + ..+..++++++..+++.+|.+.   |.+...++-..+...|++++
T Consensus       213 ~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~  266 (479)
T 2frx_A          213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP  266 (479)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred             cCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence            11100  1 2345678899988888888653   34555667777777788776

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.04  E-value=1.5e-08  Score=90.71  Aligned_cols=53  Identities=13%  Similarity=0.140  Sum_probs=44.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...++..  +.+++|+|+++.+++.|++    ++ + .++.++.+|.
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~-~-~~~~~~~~d~   99 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HG-L-DNVEFRQQDL   99 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GC-C-TTEEEEECCT
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cC-C-CCeEEEeccc
Confidence            459999999999999888876  7799999999999999988    33 3 3689988874

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.04  E-value=3.4e-11  Score=114.41  Aligned_cols=58  Identities=12%  Similarity=0.067  Sum_probs=51.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH-------HHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD-------VALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~-------~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.+++.++..  +.+|+|+|+|+       .+++.|++|++.|+ +.++|+++++|.
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~-~~~ri~~~~~d~  148 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQD-TAARINLHFGNA  148 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH-HHTTEEEEESCH
T ss_pred             cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhC-CccCeEEEECCH
Confidence            358999999999999888874  67999999999       99999999999887 777899999873

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.04  E-value=3.8e-09  Score=99.73  Aligned_cols=75  Identities=20%  Similarity=0.307  Sum_probs=58.2

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCC--
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS--  166 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~--  166 (384)
                      +.+..|..++.+++...         ...+|||||||+|.++..|+..  +.+|+|+|+|+.+++.|++++...+ ..  
T Consensus        40 ~~~~~~~~~l~~~l~~~---------~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~  107 (293)
T 3thr_A           40 SRTAEYKAWLLGLLRQH---------GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRR-KEPA  107 (293)
T ss_dssp             CBCHHHHHHHHHHHHHT---------TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-TSHH
T ss_pred             chHHHHHHHHHHHhccc---------CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcc-cccc
Confidence            34577888888887642         3468999999999998888765  5699999999999999999986553 22  


Q ss_pred             -CceEEEEcC
Q 016734          167 -ELIEIRKVD  175 (384)
Q Consensus       167 -~~I~~~~~d  175 (384)
                       .++.+..+|
T Consensus       108 ~~~~~~~~~d  117 (293)
T 3thr_A          108 FDKWVIEEAN  117 (293)
T ss_dssp             HHTCEEEECC
T ss_pred             cceeeEeecC
Confidence             246666665

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.04  E-value=6.8e-09  Score=100.95  Aligned_cols=62  Identities=15%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHH-------CCCC---CCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKS-------NPHI---SELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~-------n~~l---~~~I~~~~~d~~  177 (384)
                      ...+|||+|||+|.++..++... +..+|+|+|+++.+++.|++|++.       |+ +   .++++++.+|..
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~-~~~~~~~v~~~~~d~~  177 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH-VEEWPDNVDFIHKDIS  177 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC-SSCCCCCEEEEESCTT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccc-ccccCCceEEEECChH
Confidence            34589999999999999988774 568999999999999999999985       32 3   357999988753

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.04  E-value=8.4e-10  Score=105.82  Aligned_cols=72  Identities=15%  Similarity=0.139  Sum_probs=57.4

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEE
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK  173 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~  173 (384)
                      .+..+.+.+..         ....+|||||||+|.+...|+..  +.+|+|+|+|+.+++.|++++..++ +.++++++.
T Consensus        16 i~~~i~~~~~~---------~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~   83 (285)
T 1zq9_A           16 IINSIIDKAAL---------RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTP-VASKLQVLV   83 (285)
T ss_dssp             HHHHHHHHTCC---------CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEE
T ss_pred             HHHHHHHhcCC---------CCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEE
Confidence            45556555532         23458999999999999888876  4699999999999999999998776 556899999


Q ss_pred             cCCC
Q 016734          174 VDNS  177 (384)
Q Consensus       174 ~d~~  177 (384)
                      +|..
T Consensus        84 ~D~~   87 (285)
T 1zq9_A           84 GDVL   87 (285)
T ss_dssp             SCTT
T ss_pred             ccee
Confidence            8853

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.04  E-value=2.8e-09  Score=104.84  Aligned_cols=75  Identities=16%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (384)
Q Consensus        91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~  170 (384)
                      +..|...+.+.+..         ....+|||||||+|.++..++.. ...+|+|+|+++ +++.|+++++.++ +.++|+
T Consensus        35 ~~~y~~~i~~~l~~---------~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~-l~~~v~  102 (348)
T 2y1w_A           35 TGTYQRAILQNHTD---------FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNN-LTDRIV  102 (348)
T ss_dssp             HHHHHHHHHHTGGG---------TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT-CTTTEE
T ss_pred             HHHHHHHHHhcccc---------CCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcC-CCCcEE
Confidence            34556666655532         13468999999999998877754 456999999996 8899999999998 888999


Q ss_pred             EEEcCCC
Q 016734          171 IRKVDNS  177 (384)
Q Consensus       171 ~~~~d~~  177 (384)
                      ++.+|..
T Consensus       103 ~~~~d~~  109 (348)
T 2y1w_A          103 VIPGKVE  109 (348)
T ss_dssp             EEESCTT
T ss_pred             EEEcchh
Confidence            9998753

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.04  E-value=2.2e-09  Score=102.56  Aligned_cols=58  Identities=9%  Similarity=-0.013  Sum_probs=48.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC--CCC--------CCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN--PHI--------SELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n--~~l--------~~~I~~~~~d  175 (384)
                      .+.+|||||||+|.++..+++. +..+++++|+|+.+++.|++|+ ..  + +        ..+++++.+|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~-l~~~~~~~~~~~v~~~~~D  142 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNG-LLEAMLNGKHEKAKLTIGD  142 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTT-HHHHHHTTCCSSEEEEESC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccc-cccccccCCCCcEEEEECc
Confidence            3468999999999999888876 7779999999999999999998 33  2 2        3578888876

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.03  E-value=4.5e-09  Score=95.58  Aligned_cols=53  Identities=11%  Similarity=0.046  Sum_probs=43.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...++...  .+++|+|+++.+++.|+++...      ++.++.+|.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~------~v~~~~~d~   95 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKD------GITYIHSRF   95 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCS------CEEEEESCG
T ss_pred             CCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhhC------CeEEEEccH
Confidence            4579999999999988887654  4899999999999999987542      488888763

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.03  E-value=1.2e-09  Score=110.72  Aligned_cols=62  Identities=16%  Similarity=0.117  Sum_probs=51.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHH-------HCCCC-CCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK-------SNPHI-SELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~-------~n~~l-~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.+.+.++...+..+++|||+++.+++.|++|++       .++ + .++|+++++|..
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G-l~~~rVefi~GD~~  242 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG-KKHAEYTLERGDFL  242 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT-BCCCEEEEEECCTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCCCCeEEEECccc
Confidence            4568999999999999888876655579999999999999998763       344 4 368999999864

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.03  E-value=2.2e-09  Score=104.13  Aligned_cols=61  Identities=15%  Similarity=0.081  Sum_probs=51.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH--CCCC-CCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS--NPHI-SELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~--n~~l-~~~I~~~~~d~  176 (384)
                      .+.+|||||||+|.++..+++..+..+++++|+|+.+++.|++|+..  ++ + ..+++++.+|.
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~-~~~~rv~v~~~Da  158 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG-YSSSKLTLHVGDG  158 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCH
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcH
Confidence            35699999999999998888766678999999999999999999865  33 3 45799988873

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.02  E-value=3e-09  Score=96.89  Aligned_cols=94  Identities=12%  Similarity=0.159  Sum_probs=70.5

Q ss_pred             ccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-----cCCEEEEE
Q 016734           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-----LGWSFVGS  145 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-----~~~~v~gv  145 (384)
                      .+++..+.+..+..++. |...   .++.+.+....       ....+|||||||+|.++..++...     +..+|+|+
T Consensus        47 ~y~d~~~~~~~~~~~~~-p~~~---~~~~~~l~~~~-------~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~v  115 (227)
T 2pbf_A           47 PYIDTPVYISHGVTISA-PHMH---ALSLKRLINVL-------KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGL  115 (227)
T ss_dssp             TTSSSCEEEETTEEECC-HHHH---HHHHHHHTTTS-------CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEE
T ss_pred             cCCCCccccCCCCccCC-hHHH---HHHHHHHHhhC-------CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEE
Confidence            35666788888888887 6543   34444443210       134689999999999998888765     45799999


Q ss_pred             eCcHHHHHHHHHHHHHCCCC----CCceEEEEcCC
Q 016734          146 DMTDVALEWAEKNVKSNPHI----SELIEIRKVDN  176 (384)
Q Consensus       146 Did~~al~~A~~Ni~~n~~l----~~~I~~~~~d~  176 (384)
                      |+++.+++.|++|++.++ +    .+++.++.+|.
T Consensus       116 D~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~  149 (227)
T 2pbf_A          116 ERVKDLVNFSLENIKRDK-PELLKIDNFKIIHKNI  149 (227)
T ss_dssp             ESCHHHHHHHHHHHHHHC-GGGGSSTTEEEEECCG
T ss_pred             eCCHHHHHHHHHHHHHcC-ccccccCCEEEEECCh
Confidence            999999999999998875 3    35789888874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.02  E-value=5.5e-09  Score=92.21  Aligned_cols=57  Identities=21%  Similarity=0.243  Sum_probs=49.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.++..++..  +.+++|+|+++.+++.|++++..++ +. ++.++.+|.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~d~   89 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIEN-LD-NLHTRVVDL   89 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT-CT-TEEEEECCG
T ss_pred             CCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCC-CC-CcEEEEcch
Confidence            459999999999998888765  7799999999999999999998886 53 488888763

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.02  E-value=4.6e-09  Score=99.99  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=54.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHC-CCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n-~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.++..|+..+ ++.+|+|+|+++.+++.|+++++.+ + ...++.++.+|..
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~~v~~~~~d~~   99 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD-TYKNVSFKISSSD   99 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC--CCTTEEEEECCTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC-CCCceEEEEcCHH
Confidence            35699999999999999999876 7899999999999999999999987 3 4568999998854

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.02  E-value=4.1e-10  Score=105.30  Aligned_cols=75  Identities=13%  Similarity=0.149  Sum_probs=62.7

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |+...++.++....            ...+|||||||+|..++.++...+ +.+|+|+|+++.+++.|++|++.++ +.+
T Consensus        46 ~~~~~~l~~l~~~~------------~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~  112 (242)
T 3r3h_A           46 PEQAQFMQMLIRLT------------RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK-QEH  112 (242)
T ss_dssp             HHHHHHHHHHHHHH------------TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT-CTT
T ss_pred             HHHHHHHHHHHhhc------------CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCC
Confidence            55566666555443            245899999999999999998775 7899999999999999999999998 888


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      +|+++.+|.
T Consensus       113 ~i~~~~gda  121 (242)
T 3r3h_A          113 KIKLRLGPA  121 (242)
T ss_dssp             TEEEEESCH
T ss_pred             cEEEEEcCH
Confidence            999999874

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.02  E-value=8.8e-10  Score=106.85  Aligned_cols=70  Identities=16%  Similarity=0.082  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      +.+..+.+.+..         ....+|||||||+|.+...|+..  +.+|+|+|+|+.+++.|++++...    ++++++
T Consensus        37 ~i~~~Iv~~l~~---------~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~----~~v~vi  101 (295)
T 3gru_A           37 NFVNKAVESANL---------TKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELY----NNIEII  101 (295)
T ss_dssp             HHHHHHHHHTTC---------CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHC----SSEEEE
T ss_pred             HHHHHHHHhcCC---------CCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccC----CCeEEE
Confidence            345556665532         13458999999999999888876  579999999999999999998743    269999


Q ss_pred             EcCCC
Q 016734          173 KVDNS  177 (384)
Q Consensus       173 ~~d~~  177 (384)
                      ++|..
T Consensus       102 ~gD~l  106 (295)
T 3gru_A          102 WGDAL  106 (295)
T ss_dssp             ESCTT
T ss_pred             ECchh
Confidence            99854

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.01  E-value=7.2e-09  Score=101.23  Aligned_cols=60  Identities=15%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++...++++++++|+ +.+++.|++|+..++ +.++|+++.+|.
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~  242 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG-LSDRVDVVEGDF  242 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC-CCCceEEEeCCC
Confidence            456999999999999999999989999999999 999999999999987 778899998874

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.01  E-value=1.8e-09  Score=101.32  Aligned_cols=75  Identities=11%  Similarity=0.185  Sum_probs=62.8

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |+...++.++....            ...+|||||||+|..+..++...+ +.+++++|+++.+++.|++|++.++ +.+
T Consensus        65 ~~~~~ll~~l~~~~------------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-~~~  131 (247)
T 1sui_A           65 ADEGQFLSMLLKLI------------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDH  131 (247)
T ss_dssp             HHHHHHHHHHHHHT------------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGG
T ss_pred             HHHHHHHHHHHHhh------------CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCC
Confidence            56666666555432            245899999999999999998877 7899999999999999999999998 788


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      +|+++.+|.
T Consensus       132 ~i~~~~gda  140 (247)
T 1sui_A          132 KIDFREGPA  140 (247)
T ss_dssp             GEEEEESCH
T ss_pred             CeEEEECCH
Confidence            899998874

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.01  E-value=8.2e-09  Score=101.14  Aligned_cols=61  Identities=15%  Similarity=0.106  Sum_probs=55.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.+...++.++|+.+++++|+ +.+++.|+++++.++ +.++|+++.+|..
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~  250 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIY  250 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT-CTTTEEEEECCTT
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC-CCCCEEEEeCccc
Confidence            456999999999999999999999999999999 999999999999987 7888999998753

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.01  E-value=1.9e-10  Score=116.40  Aligned_cols=57  Identities=16%  Similarity=-0.016  Sum_probs=50.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC--CCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN--PHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n--~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.+++.|+..  +.+|+|+|+|+.+++.|++|++.+  + + ++|+++++|.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~g-l-~~i~~i~~Da  152 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNE-G-KDVNILTGDF  152 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCT-T-CEEEEEESCG
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccC-C-CcEEEEECcH
Confidence            468999999999998888754  579999999999999999999988  7 5 6799999884

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.00  E-value=1.1e-09  Score=110.05  Aligned_cols=60  Identities=22%  Similarity=0.083  Sum_probs=53.6

Q ss_pred             CCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCc-eEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~-I~~~~~d~  176 (384)
                      ..+|||++||+|.+++.++.+..+ .+|+++|+|+.|++.|++|++.|+ ++++ ++++.+|.
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng-l~~~~v~v~~~Da  114 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN-IPEDRYEIHGMEA  114 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEECSCH
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCceEEEEeCCH
Confidence            468999999999999999887666 589999999999999999999998 8877 99988874

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.00  E-value=2e-09  Score=99.42  Aligned_cols=75  Identities=16%  Similarity=0.169  Sum_probs=61.9

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |....++..+....            ...+|||||||+|..+..++...+ +.+++++|+++.+++.|++|++.++ +.+
T Consensus        58 ~~~~~~l~~l~~~~------------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~  124 (232)
T 3cbg_A           58 PEQAQFLGLLISLT------------GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG-VAE  124 (232)
T ss_dssp             HHHHHHHHHHHHHH------------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGG
T ss_pred             HHHHHHHHHHHHhc------------CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCC
Confidence            56666666555433            235899999999999999988776 6899999999999999999999987 777


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      +|+++.+|.
T Consensus       125 ~i~~~~~d~  133 (232)
T 3cbg_A          125 KISLRLGPA  133 (232)
T ss_dssp             GEEEEESCH
T ss_pred             cEEEEEcCH
Confidence            899998873

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.00  E-value=5.4e-09  Score=89.47  Aligned_cols=153  Identities=10%  Similarity=-0.011  Sum_probs=97.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|.++..++... ++.+++|+|+++ +++.            .++.++.+|..+. +.          .
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~-~~----------~   77 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDE-LV----------M   77 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSH-HH----------H
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccc-hh----------h
Confidence            34589999999999999888875 568999999998 6432            3588888774320 00          0


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                      .                                   .+...+  .+++||+|+||+|+........          ... 
T Consensus        78 ~-----------------------------------~~~~~~--~~~~~D~i~~~~~~~~~~~~~~----------~~~-  109 (180)
T 1ej0_A           78 K-----------------------------------ALLERV--GDSKVQVVMSDMAPNMSGTPAV----------DIP-  109 (180)
T ss_dssp             H-----------------------------------HHHHHH--TTCCEEEEEECCCCCCCSCHHH----------HHH-
T ss_pred             h-----------------------------------hhhccC--CCCceeEEEECCCccccCCCcc----------chH-
Confidence            0                                   000001  3468999999999864321100          000 


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCC---eeEEEEEEec
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ---TCRWGLAWSF  344 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~---t~Rw~~AWsf  344 (384)
                          -...+...++++..++++.+|++.+......+...+.+.+++. +..+.+.....++   ...|+++-.|
T Consensus       110 ----~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (180)
T 1ej0_A          110 ----RAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKVRKPDSSRARSREVYIVATGR  178 (180)
T ss_dssp             ----HHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEEECCTTSCTTCCEEEEEEEEE
T ss_pred             ----HHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhhEEeecCCcccccCceEEEEEccC
Confidence                0123457778888888888998876655577888898888875 6666655433322   2555555443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.99  E-value=8.3e-09  Score=95.09  Aligned_cols=72  Identities=21%  Similarity=0.349  Sum_probs=56.1

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEE
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK  173 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~  173 (384)
                      .+.++.+++....      .....+|||+|||+|.++..|+..  +.+++|+|+|+.+++.|++++..++ +  ++.++.
T Consensus        26 ~~~~~~~~~~~~~------~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~--~v~~~~   94 (252)
T 1wzn_A           26 EIDFVEEIFKEDA------KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERN-L--KIEFLQ   94 (252)
T ss_dssp             HHHHHHHHHHHTC------SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-C--CCEEEE
T ss_pred             HHHHHHHHHHHhc------ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcC-C--ceEEEE
Confidence            4556666654321      123468999999999998888765  6799999999999999999998876 4  588888


Q ss_pred             cCC
Q 016734          174 VDN  176 (384)
Q Consensus       174 ~d~  176 (384)
                      +|.
T Consensus        95 ~d~   97 (252)
T 1wzn_A           95 GDV   97 (252)
T ss_dssp             SCG
T ss_pred             CCh
Confidence            774

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.99  E-value=4.5e-09  Score=106.99  Aligned_cols=147  Identities=13%  Similarity=0.060  Sum_probs=99.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|..+..++...++ .+++|+|+++.+++.+++|+++++ +. ++.++.+|..+.               
T Consensus       260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-~~-~v~~~~~D~~~~---------------  322 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG-IK-IVKPLVKDARKA---------------  322 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT-CC-SEEEECSCTTCC---------------
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-CC-cEEEEEcChhhc---------------
Confidence            458999999999999999988776 799999999999999999999997 64 588887774320               


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                           ...+  .++.||+|+||||+....... ..|......+...+ 
T Consensus       323 -------------------------------------~~~~--~~~~fD~Vl~D~Pcsg~g~~~-~~pd~~~~~~~~~~-  361 (450)
T 2yxl_A          323 -------------------------------------PEII--GEEVADKVLLDAPCTSSGTIG-KNPELRWRLREDKI-  361 (450)
T ss_dssp             -------------------------------------SSSS--CSSCEEEEEEECCCCCGGGTT-TSTTHHHHCCTTSH-
T ss_pred             -------------------------------------chhh--ccCCCCEEEEcCCCCCCeeec-cChhhhhhCCHHHH-
Confidence                                                 0001  236799999999997653221 12221110011100 


Q ss_pred             ccCch-HHHHHHHHHHHHHhhccCeEEE---EEecCCCCHHHHHHHHHHc-CCe
Q 016734          275 CSGGE-RAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKV-GVT  323 (384)
Q Consensus       275 ~~GGe-l~Fv~~ii~eS~~l~~~~~w~t---~~vgk~~~l~~l~~~L~~~-g~~  323 (384)
                         -+ ..+-..+++++..+++.+|.+.   +.+...++-..+...|+++ ++.
T Consensus       362 ---~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~  412 (450)
T 2yxl_A          362 ---NEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFK  412 (450)
T ss_dssp             ---HHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCE
T ss_pred             ---HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence               01 1233678888888888888653   3344456677778888887 454

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.99  E-value=2.7e-09  Score=99.14  Aligned_cols=60  Identities=15%  Similarity=0.120  Sum_probs=54.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|..+..++...+ +.+++++|+|+.+++.|++|++..+ +.++|+++.+|.
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda  131 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG-VEHKINFIESDA  131 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCH
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence            45899999999999999998876 7899999999999999999999998 788899999874

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.99  E-value=4.9e-09  Score=93.44  Aligned_cols=54  Identities=17%  Similarity=0.179  Sum_probs=47.1

Q ss_pred             eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +|||||||+|.++..++..  +.+++|+|+++.+++.|++++..++ +  ++.++.+|.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~   85 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKG-V--KITTVQSNL   85 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHT-C--CEEEECCBT
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcC-C--ceEEEEcCh
Confidence            8999999999998888764  6799999999999999999998876 4  588887764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.98  E-value=3.7e-08  Score=90.01  Aligned_cols=57  Identities=11%  Similarity=-0.005  Sum_probs=45.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.++..++...++.+|+|+|+|+.+++.+.++++...    ++.++.+|.
T Consensus        58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~----~v~~~~~d~  114 (210)
T 1nt2_A           58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFDA  114 (210)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSCT
T ss_pred             CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC----CeEEEEcCC
Confidence            458999999999998888877666699999999999887777766542    477776653

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.98  E-value=8.8e-09  Score=96.93  Aligned_cols=53  Identities=19%  Similarity=0.241  Sum_probs=44.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++.  ++.+++|+|+++.+++.|+++.       .++.++.+|.
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~  109 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADA  109 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCT
T ss_pred             CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECCh
Confidence            346899999999999888876  7889999999999999998875       2466777764

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.98  E-value=4.6e-09  Score=96.59  Aligned_cols=42  Identities=21%  Similarity=0.367  Sum_probs=36.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N  158 (384)
                      ...+|||||||+|.++..++..  +++++|+|+|+.+++.|+++
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT
T ss_pred             CCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh
Confidence            3468999999999998888765  67899999999999998876

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.97  E-value=2.4e-09  Score=108.26  Aligned_cols=146  Identities=12%  Similarity=0.017  Sum_probs=99.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||+|||+|.....++...++.+|+|+|+++.+++.+++|+++++ +  .+.++.+|..+                
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g-~--~~~~~~~D~~~----------------  306 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-M--KATVKQGDGRY----------------  306 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-C--CCEEEECCTTC----------------
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC-C--CeEEEeCchhh----------------
Confidence            3458999999999999999988877899999999999999999999997 5  37888777432                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          +...+  .+++||+|+||||+....... ..|......+...+ 
T Consensus       307 ------------------------------------~~~~~--~~~~fD~Vl~D~Pcsg~g~~~-~~p~~~~~~~~~~~-  346 (429)
T 1sqg_A          307 ------------------------------------PSQWC--GEQQFDRILLDAPCSATGVIR-RHPDIKWLRRDRDI-  346 (429)
T ss_dssp             ------------------------------------THHHH--TTCCEEEEEEECCCCCGGGTT-TCTTHHHHCCTTHH-
T ss_pred             ------------------------------------chhhc--ccCCCCEEEEeCCCCcccccC-CCcchhhcCCHHHH-
Confidence                                                00001  246899999999997654322 12322111111100 


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEE---EecCCCCHHHHHHHHHHcC
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTS---MVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~---~vgk~~~l~~l~~~L~~~g  321 (384)
                        .+-..+...+++++..+++.+|++..   -+...++...+...|++++
T Consensus       347 --~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~  394 (429)
T 1sqg_A          347 --PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA  394 (429)
T ss_dssp             --HHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             --HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCC
Confidence              00124556788888888888887532   3444567777888888763

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.97  E-value=7.3e-09  Score=93.36  Aligned_cols=54  Identities=15%  Similarity=0.124  Sum_probs=44.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++..  +.+++|+|+++.+++.|++++.      .++.++.+|.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~   98 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP------KEFSITEGDF   98 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC------TTCCEESCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC------CceEEEeCCh
Confidence            3468999999999998888765  7899999999999999998865      2467776664

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.97  E-value=8e-09  Score=95.28  Aligned_cols=55  Identities=25%  Similarity=0.230  Sum_probs=47.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++...++.+++|+|+++.+++.|+++   .    .++.++.+|.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~---~----~~~~~~~~d~   87 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---L----PNTNFGKADL   87 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH---S----TTSEEEECCT
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C----CCcEEEECCh
Confidence            34689999999999999999888889999999999999999988   2    2478887764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.97  E-value=2.6e-09  Score=97.77  Aligned_cols=55  Identities=9%  Similarity=0.006  Sum_probs=50.4

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      ..+|||||||+|.+++.++...|+++++|+|||+.|++.|++|++.++ +..++.+
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g-~~~~v~~  104 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK-TTIKYRF  104 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC-CSSEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCccEEE
Confidence            569999999999999999988899999999999999999999999998 6666666

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.97  E-value=1e-09  Score=109.72  Aligned_cols=59  Identities=17%  Similarity=0.011  Sum_probs=52.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC---------------CCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN---------------PHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n---------------~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|++++.++.+.++.+|+++|+|+.+++.|++|++.|               + +++ ++++++|.
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g-l~~-i~v~~~Da  121 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG-EKT-IVINHDDA  121 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES-SSE-EEEEESCH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC-CCc-eEEEcCcH
Confidence            45899999999999999998877789999999999999999999999               6 654 88888874

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.97  E-value=3.8e-09  Score=103.49  Aligned_cols=136  Identities=13%  Similarity=0.038  Sum_probs=93.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      +.+|||||||+|.+...+++.+++.++++||||+.+++.|+++...+  ...+++++.+|..+                 
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~--~~~rv~v~~~Da~~-----------------  150 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP--RAPRVKIRVDDARM-----------------  150 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC--CTTTEEEEESCHHH-----------------
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc--CCCceEEEECcHHH-----------------
Confidence            45999999999999999998889999999999999999999998644  24589999887421                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         ++...  .+++||+|+++.+....      .|        ..+  
T Consensus       151 -----------------------------------~l~~~--~~~~fDvIi~D~~~~~~------~~--------~~L--  177 (317)
T 3gjy_A          151 -----------------------------------VAESF--TPASRDVIIRDVFAGAI------TP--------QNF--  177 (317)
T ss_dssp             -----------------------------------HHHTC--CTTCEEEEEECCSTTSC------CC--------GGG--
T ss_pred             -----------------------------------HHhhc--cCCCCCEEEECCCCccc------cc--------hhh--
Confidence                                               11111  24689999999632210      01        111  


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCC---HHHHHHHHHHcCCeEEEEEEe
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSN---LKFLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~---l~~l~~~L~~~g~~~v~~~e~  330 (384)
                            +...++++..+.++.+|+|.+-++....   +..+.+.|++. |..+.+..+
T Consensus       178 ------~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~~~  228 (317)
T 3gjy_A          178 ------TTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAVIAD  228 (317)
T ss_dssp             ------SBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEEEC
T ss_pred             ------hHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCceEEEEe
Confidence                  1123445566778899998877764433   34566666665 556666653

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.96  E-value=1.4e-08  Score=98.79  Aligned_cols=60  Identities=10%  Similarity=0.009  Sum_probs=55.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.+...++..+|+.+++++|+ +.+++.|++++...+ +.++|+++.+|..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~  239 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD-LGGRVEFFEKNLL  239 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT-CGGGEEEEECCTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC-CCCceEEEeCCcc
Confidence            57999999999999999999999999999999 889999999999987 8889999998854

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.96  E-value=3.2e-08  Score=97.70  Aligned_cols=60  Identities=17%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++..+|+.+++++|+ +.+++.|++++...+ +.++|+++.+|.
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-l~~~v~~~~~d~  261 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG-LADRCEILPGDF  261 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC-cCCceEEeccCC
Confidence            457999999999999999999999999999999 999999999999987 888999998874

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.95  E-value=4.9e-09  Score=96.73  Aligned_cols=60  Identities=17%  Similarity=0.091  Sum_probs=54.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|..+..++...+ +.+++++|+++.+++.|+++++.++ +.++|.++.+|.
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~v~~~~~d~  121 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG-LENKIFLKLGSA  121 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCH
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCH
Confidence            45899999999999999988876 6899999999999999999999987 777899998874

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.95  E-value=1.4e-08  Score=90.51  Aligned_cols=132  Identities=9%  Similarity=0.080  Sum_probs=87.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|.++..++...+. +++|+|+++.+++.|++++...    .++.++.+|..+                 
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~----~~i~~~~~d~~~-----------------  100 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHV----PQLRWETMDVRK-----------------  100 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTC----TTCEEEECCTTS-----------------
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccC----CCcEEEEcchhc-----------------
Confidence            458999999999999888876443 8999999999999999998642    368888887432                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         +  .+  .+++||+|+||+|+........ .|           +.
T Consensus       101 -----------------------------------~--~~--~~~~fD~v~~~~~~~~~~~~~~-~~-----------~~  129 (215)
T 2pxx_A          101 -----------------------------------L--DF--PSASFDVVLEKGTLDALLAGER-DP-----------WT  129 (215)
T ss_dssp             -----------------------------------C--CS--CSSCEEEEEEESHHHHHTTTCS-CT-----------TS
T ss_pred             -----------------------------------C--CC--CCCcccEEEECcchhhhccccc-cc-----------cc
Confidence                                               0  01  2467999999999853211000 00           00


Q ss_pred             cC-chHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCC
Q 016734          276 SG-GERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGV  322 (384)
Q Consensus       276 ~G-Gel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~  322 (384)
                      .. ....-...++++..++++.+|++.+..-  ..-......+...++
T Consensus       130 ~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~--~~~~~~~~~~~~~~~  175 (215)
T 2pxx_A          130 VSSEGVHTVDQVLSEVSRVLVPGGRFISMTS--AAPHFRTRHYAQAYY  175 (215)
T ss_dssp             CCHHHHHHHHHHHHHHHHHEEEEEEEEEEES--CCHHHHHHHHCCGGG
T ss_pred             cccchhHHHHHHHHHHHHhCcCCCEEEEEeC--CCcHHHHHHHhcccc
Confidence            00 1244567788888888888888754443  333334455555554

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.95  E-value=2e-08  Score=94.34  Aligned_cols=132  Identities=11%  Similarity=-0.006  Sum_probs=93.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|.....||... +.-+|+|+|+++++++.|+++++..+    ++..+.+|...  |.           
T Consensus        77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~----ni~~V~~d~~~--p~-----------  139 (233)
T 4df3_A           77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR----NIFPILGDARF--PE-----------  139 (233)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT----TEEEEESCTTC--GG-----------
T ss_pred             CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc----CeeEEEEeccC--cc-----------
Confidence            34689999999999998888764 66799999999999999999887654    47888777432  10           


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                           ..   ....+.+|+|+|..|+...                   
T Consensus       140 -------------------------------------~~---~~~~~~vDvVf~d~~~~~~-------------------  160 (233)
T 4df3_A          140 -------------------------------------KY---RHLVEGVDGLYADVAQPEQ-------------------  160 (233)
T ss_dssp             -------------------------------------GG---TTTCCCEEEEEECCCCTTH-------------------
T ss_pred             -------------------------------------cc---ccccceEEEEEEeccCChh-------------------
Confidence                                                 00   0124689999998765421                   


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEec---------CCCCHHHHHHHHHHcCCeEEEEEEee
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVG---------RKSNLKFLISKLRKVGVTIVKTTEFV  331 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg---------k~~~l~~l~~~L~~~g~~~v~~~e~~  331 (384)
                               ...++.++..+++++|.+...+-         -+..++..++.|++.||+.+++.++.
T Consensus       161 ---------~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~  218 (233)
T 4df3_A          161 ---------AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLD  218 (233)
T ss_dssp             ---------HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             ---------HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccC
Confidence                     23345666677888887654431         12234567788999999988887764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.94  E-value=2.5e-09  Score=100.16  Aligned_cols=56  Identities=13%  Similarity=0.120  Sum_probs=47.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...|+.+.  .+|+|+|+|+.+++.|++|+...    ++++++.+|.
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~----~~v~~~~~D~   85 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDI   85 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCG
T ss_pred             CCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccC----CCeEEEEChH
Confidence            34689999999999998888764  79999999999999999998643    3689988874

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.94  E-value=1.6e-08  Score=90.74  Aligned_cols=84  Identities=18%  Similarity=0.182  Sum_probs=63.1

Q ss_pred             EEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHH
Q 016734           76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA  155 (384)
Q Consensus        76 ~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A  155 (384)
                      .+.+..+..+.. |.   .+..+.+.+..         ....+|||||||+|.++..++..  +.+|+|+|+++.+++.|
T Consensus        51 ~~~~~~~~~~~~-~~---~~~~~~~~l~~---------~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a  115 (210)
T 3lbf_A           51 ALPIGQGQTISQ-PY---MVARMTELLEL---------TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQA  115 (210)
T ss_dssp             CEECTTSCEECC-HH---HHHHHHHHTTC---------CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHH
T ss_pred             ccccCCCCEeCC-HH---HHHHHHHhcCC---------CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHH
Confidence            345555555555 32   33444454432         23568999999999999888876  68999999999999999


Q ss_pred             HHHHHHCCCCCCceEEEEcCC
Q 016734          156 EKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       156 ~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ++|+..++ +. +++++.+|.
T Consensus       116 ~~~~~~~~-~~-~v~~~~~d~  134 (210)
T 3lbf_A          116 RRRLKNLD-LH-NVSTRHGDG  134 (210)
T ss_dssp             HHHHHHTT-CC-SEEEEESCG
T ss_pred             HHHHHHcC-CC-ceEEEECCc
Confidence            99999987 55 699988874

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.94  E-value=4e-09  Score=95.50  Aligned_cols=61  Identities=21%  Similarity=0.204  Sum_probs=47.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCC----------CCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH----------ISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~----------l~~~I~~~~~d~~  177 (384)
                      ...+|||+|||+|..+..|+.+  +++|+|+|+|+.|++.|+++......          ...+|+++++|..
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~   92 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   92 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             CCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence            3468999999999998888865  78999999999999999987643100          0235888888753

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.94  E-value=4.2e-09  Score=109.97  Aligned_cols=61  Identities=15%  Similarity=0.021  Sum_probs=47.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc------------------CCEEEEEeCcHHHHHHHHHHHHHCCCCCC----ceEEE
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL------------------GWSFVGSDMTDVALEWAEKNVKSNPHISE----LIEIR  172 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~------------------~~~v~gvDid~~al~~A~~Ni~~n~~l~~----~I~~~  172 (384)
                      ...+|||.|||||.+.+.++....                  ...++|+|+++.+++.|+.|+..++ +..    ++.++
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g-i~~~~~~~~~I~  247 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHGGAIR  247 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT-CCCBGGGTBSEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC-CCccccccCCeE
Confidence            346899999999999877765432                  2479999999999999999999887 543    25667


Q ss_pred             EcCC
Q 016734          173 KVDN  176 (384)
Q Consensus       173 ~~d~  176 (384)
                      ++|.
T Consensus       248 ~gDt  251 (541)
T 2ar0_A          248 LGNT  251 (541)
T ss_dssp             ESCT
T ss_pred             eCCC
Confidence            7663

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.93  E-value=2e-08  Score=97.19  Aligned_cols=59  Identities=14%  Similarity=0.011  Sum_probs=54.6

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...++..+|+.+++++|+ +.+++.|++++...+ +.++|+++.+|.
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~  228 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG-LSGRAQVVVGSF  228 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC-cCcCeEEecCCC
Confidence            46999999999999999999999999999999 999999999999887 888999998874

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.93  E-value=9.4e-10  Score=118.82  Aligned_cols=49  Identities=12%  Similarity=0.079  Sum_probs=41.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc---CCEEEEEeCcHHHHHHH--HHHHHHCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL---GWSFVGSDMTDVALEWA--EKNVKSNP  163 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~---~~~v~gvDid~~al~~A--~~Ni~~n~  163 (384)
                      ...+|||.|||||++.+.++...+   ..+++|+|+|+.+++.|  +.|+..|.
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            356899999999999988887664   35799999999999999  88887654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.93  E-value=1e-09  Score=114.75  Aligned_cols=152  Identities=13%  Similarity=0.080  Sum_probs=91.8

Q ss_pred             CeEEEECCcccHHHHHHHhhcc---------------CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLL---------------GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTP  181 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~---------------~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p  181 (384)
                      .+|||.|||||.+.+.++....               ...++|+|+++.+++.|+.|+..++ +...|.++++|...   
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~i~i~~gDtL~---  321 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG-IDFNFGKKNADSFL---  321 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT-CCCBCCSSSCCTTT---
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC-CCcccceeccchhc---
Confidence            4899999999998776654321               4689999999999999999999987 65544444444221   


Q ss_pred             cccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhh---
Q 016734          182 SIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA---  258 (384)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~---  258 (384)
                                                          .           +.     ....+||+|||||||.......   
T Consensus       322 ------------------------------------~-----------~~-----~~~~~fD~Iv~NPPf~~~~~~~~~~  349 (544)
T 3khk_A          322 ------------------------------------D-----------DQ-----HPDLRADFVMTNPPFNMKDWWHEKL  349 (544)
T ss_dssp             ------------------------------------S-----------CS-----CTTCCEEEEEECCCSSCCSCCCGGG
T ss_pred             ------------------------------------C-----------cc-----cccccccEEEECCCcCCccccchhh
Confidence                                                0           00     0246899999999998532111   


Q ss_pred             ccCCccccCCCcc--c--c-cccCchHHHHHHHHHHHHHhhccCeEEEEEec-----CC-CCHHHHHHHHHHcCCeEEEE
Q 016734          259 GLNPKTSCGGTPE--E--M-VCSGGERAFITRIIEDSVALKQTFRWYTSMVG-----RK-SNLKFLISKLRKVGVTIVKT  327 (384)
Q Consensus       259 ~~~p~~~~~g~~~--E--~-~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg-----k~-~~l~~l~~~L~~~g~~~v~~  327 (384)
                      ...++... |...  .  + -...+++.|+..++    .+++.+|...+.+.     .. +....+.+.|-+.+. ...+
T Consensus       350 ~~d~r~~~-g~~~~~~~~~~~~~~~~~~Fl~~~l----~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~-l~aI  423 (544)
T 3khk_A          350 ADDPRWTI-NTNGEKRILTPPTGNANFAWMLHML----YHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDL-VECM  423 (544)
T ss_dssp             TTCGGGEE-CCC--CEECCCCTTCTHHHHHHHHH----HTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             hhhhhhhc-CcccccccccCCCcchhHHHHHHHH----HHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCc-HhEE
Confidence            11111111 1000  0  0 01223567776654    45667777655553     12 346788888877664 2345


Q ss_pred             EEe
Q 016734          328 TEF  330 (384)
Q Consensus       328 ~e~  330 (384)
                      +.+
T Consensus       424 I~L  426 (544)
T 3khk_A          424 VAL  426 (544)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.93  E-value=7.4e-09  Score=95.24  Aligned_cols=57  Identities=7%  Similarity=-0.135  Sum_probs=47.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...++.. ...+++|+|+|+.+++.|+++++.++   .++.++.+|.
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~  117 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLW  117 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCH
T ss_pred             CCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCH
Confidence            468999999999998888643 33489999999999999999988765   4688888873

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.93  E-value=1.8e-08  Score=92.94  Aligned_cols=57  Identities=18%  Similarity=0.338  Sum_probs=47.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..++..  +.+++|+|+|+.+++.|++++ ..  ...++.++.+|.
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~--~~~~~~~~~~d~   95 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AG--VDRKVQVVQADA   95 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TT--SCTTEEEEESCT
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hc--cCCceEEEEccc
Confidence            3568999999999998888765  679999999999999999998 22  335699988874

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.92  E-value=5.5e-09  Score=97.66  Aligned_cols=65  Identities=18%  Similarity=0.046  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      .+...+.+.+..         ....+|||||||+|.++..++.  ++.+|+|+|+|+.+++.|+++.        ++.++
T Consensus        21 ~~~~~l~~~~~~---------~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~--------~~~~~   81 (261)
T 3ege_A           21 RIVNAIINLLNL---------PKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP--------QVEWF   81 (261)
T ss_dssp             HHHHHHHHHHCC---------CTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT--------TEEEE
T ss_pred             HHHHHHHHHhCC---------CCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc--------CCEEE
Confidence            456666666642         2356999999999999888875  7789999999999998876543        47888


Q ss_pred             EcCC
Q 016734          173 KVDN  176 (384)
Q Consensus       173 ~~d~  176 (384)
                      .+|.
T Consensus        82 ~~d~   85 (261)
T 3ege_A           82 TGYA   85 (261)
T ss_dssp             CCCT
T ss_pred             ECch
Confidence            7764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.92  E-value=2.3e-09  Score=102.70  Aligned_cols=67  Identities=12%  Similarity=0.058  Sum_probs=53.1

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEE
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK  173 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~  173 (384)
                      .+..+.+.+..         ... +|||||||+|.+...|+..  +.+|+|+|+|+++++.+++++..     +++++++
T Consensus        35 i~~~Iv~~~~~---------~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~-----~~v~vi~   97 (271)
T 3fut_A           35 HLRRIVEAARP---------FTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG-----LPVRLVF   97 (271)
T ss_dssp             HHHHHHHHHCC---------CCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT-----SSEEEEE
T ss_pred             HHHHHHHhcCC---------CCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC-----CCEEEEE
Confidence            45556666543         134 8999999999999988876  46899999999999999998752     3699999


Q ss_pred             cCCC
Q 016734          174 VDNS  177 (384)
Q Consensus       174 ~d~~  177 (384)
                      +|..
T Consensus        98 ~D~l  101 (271)
T 3fut_A           98 QDAL  101 (271)
T ss_dssp             SCGG
T ss_pred             CChh
Confidence            9854

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.92  E-value=3.1e-09  Score=106.31  Aligned_cols=59  Identities=10%  Similarity=0.103  Sum_probs=49.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...|||||||+|.+++.+| +.-..+|+|||.++ +++.|+++++.|+ ++++|++++++..
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa-~aGA~~V~ave~s~-~~~~a~~~~~~n~-~~~~i~~i~~~~~  142 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCA-QAGARRVYAVEASA-IWQQAREVVRFNG-LEDRVHVLPGPVE  142 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHH-HTTCSEEEEEECST-THHHHHHHHHHTT-CTTTEEEEESCTT
T ss_pred             CCEEEEeCCCccHHHHHHH-HhCCCEEEEEeChH-HHHHHHHHHHHcC-CCceEEEEeeeee
Confidence            4589999999998876555 33334899999996 7899999999998 9999999998753

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.90  E-value=1.5e-08  Score=98.35  Aligned_cols=138  Identities=13%  Similarity=0.052  Sum_probs=92.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH-CCC-C-CCceEEEEcCCCCCCCcccccccCCc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS-NPH-I-SELIEIRKVDNSESTPSIQESLTGKS  191 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~-n~~-l-~~~I~~~~~d~~~~~p~~~~~~~~~~  191 (384)
                      .+.+|||||||+|.++..+++..+..+++++|+|+.+++.|++++.. +.. + ..+++++.+|..+             
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~-------------  143 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA-------------  143 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH-------------
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHH-------------
Confidence            34699999999999998888766678999999999999999999864 211 2 3579999887321             


Q ss_pred             cccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcc
Q 016734          192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPE  271 (384)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~  271 (384)
                                                             .+   ....++||+|+|++|.....  .  .|       . 
T Consensus       144 ---------------------------------------~l---~~~~~~fD~Ii~d~~~~~~~--~--~~-------~-  169 (314)
T 1uir_A          144 ---------------------------------------YL---ERTEERYDVVIIDLTDPVGE--D--NP-------A-  169 (314)
T ss_dssp             ---------------------------------------HH---HHCCCCEEEEEEECCCCBST--T--CG-------G-
T ss_pred             ---------------------------------------HH---HhcCCCccEEEECCCCcccc--c--Cc-------c-
Confidence                                                   01   11246899999998653200  0  00       0 


Q ss_pred             cccccCchHHHHHHHHHHHHHhhccCeEEEEEecCC-----CCHHHHHHHHHHcCCeEEEE
Q 016734          272 EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK-----SNLKFLISKLRKVGVTIVKT  327 (384)
Q Consensus       272 E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~-----~~l~~l~~~L~~~g~~~v~~  327 (384)
                             +-.+...++++..+.++.+|++.+..+..     .....+.+.|++. |..+..
T Consensus       170 -------~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~  222 (314)
T 1uir_A          170 -------RLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRS  222 (314)
T ss_dssp             -------GGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEE
T ss_pred             -------hhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCceEE
Confidence                   11123455566677888999887665432     3356777777766 444544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.90  E-value=2.1e-08  Score=95.96  Aligned_cols=97  Identities=9%  Similarity=-0.003  Sum_probs=64.5

Q ss_pred             cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      .||.-+.+........ +....|-+.+..+.....       ..+.+|||||||+|.++..+++..+..+++++|+|+.+
T Consensus        43 ~~g~~l~ldg~~q~~~-~~e~~Y~e~l~~~~l~~~-------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~  114 (283)
T 2i7c_A           43 TYGKVLVLDGVIQLTE-KDEFAYHEMMTHVPMTVS-------KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETV  114 (283)
T ss_dssp             SSCEEEEETTEEEEET-TTHHHHHHHHHHHHHTTS-------SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHH
T ss_pred             CCCEEEEECCEeeecc-cchhhHHHHHHHHHHhcC-------CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHH
Confidence            3555555543333333 444556554443322111       23569999999999999888866667899999999999


Q ss_pred             HHHHHHHHHHCC-CC-CCceEEEEcCC
Q 016734          152 LEWAEKNVKSNP-HI-SELIEIRKVDN  176 (384)
Q Consensus       152 l~~A~~Ni~~n~-~l-~~~I~~~~~d~  176 (384)
                      ++.|++++..++ .+ ..+++++.+|.
T Consensus       115 i~~a~~~~~~~~~~~~~~~v~~~~~D~  141 (283)
T 2i7c_A          115 IEVSKIYFKNISCGYEDKRVNVFIEDA  141 (283)
T ss_dssp             HHHHHHHCTTTSGGGGSTTEEEEESCH
T ss_pred             HHHHHHHhHHhccccCCCcEEEEECCh
Confidence            999999986431 01 35789888873

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.90  E-value=6.5e-09  Score=96.48  Aligned_cols=69  Identities=12%  Similarity=0.022  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      .|.+.+++.+..          ...+|||||||+|.++..++...+ .+++|||+|+.+++.|+++.+..+   .++.++
T Consensus        48 ~~m~~~a~~~~~----------~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~---~~~~~~  113 (236)
T 3orh_A           48 PYMHALAAAASS----------KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT---HKVIPL  113 (236)
T ss_dssp             HHHHHHHHHHTT----------TCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCS---SEEEEE
T ss_pred             HHHHHHHHhhcc----------CCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCC---CceEEE
Confidence            355666666532          456999999999998887776544 589999999999999999998775   257777


Q ss_pred             EcC
Q 016734          173 KVD  175 (384)
Q Consensus       173 ~~d  175 (384)
                      .++
T Consensus       114 ~~~  116 (236)
T 3orh_A          114 KGL  116 (236)
T ss_dssp             ESC
T ss_pred             eeh
Confidence            776

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.90  E-value=9.7e-09  Score=99.25  Aligned_cols=58  Identities=19%  Similarity=0.043  Sum_probs=53.1

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+|||||||+|.+...++..+|+.+++++|+ +.+++.|++++...+ +.++|+++.+|.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~  226 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL-AGERVSLVGGDM  226 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH-HTTSEEEEESCT
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC-CCCcEEEecCCC
Confidence            7999999999999999999889999999999 999999999998776 677899998874

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.89  E-value=4.3e-09  Score=102.21  Aligned_cols=86  Identities=12%  Similarity=0.096  Sum_probs=66.0

Q ss_pred             CCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH
Q 016734           82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (384)
Q Consensus        82 ~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~  161 (384)
                      +.|... |--.+|+..+...+....+      ..+.+|||||||+|.+..+++++.++++|+|+|+|+++++.|+++++.
T Consensus        96 ~~l~~f-py~~~~~~l~~~E~~la~l------~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~  168 (298)
T 3fpf_A           96 ETLRSF-YFYPRYLELLKNEAALGRF------RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG  168 (298)
T ss_dssp             HHHHTS-TTHHHHHHHHHHHHHHTTC------CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHH
T ss_pred             HhhccC-CCcccHHHHHHHHHHHcCC------CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHh
Confidence            356655 7767777776644322111      245699999999997765655667899999999999999999999999


Q ss_pred             CCCCCCceEEEEcCC
Q 016734          162 NPHISELIEIRKVDN  176 (384)
Q Consensus       162 n~~l~~~I~~~~~d~  176 (384)
                      .+ + ++|+++.+|.
T Consensus       169 ~g-l-~~v~~v~gDa  181 (298)
T 3fpf_A          169 LG-V-DGVNVITGDE  181 (298)
T ss_dssp             HT-C-CSEEEEESCG
T ss_pred             cC-C-CCeEEEECch
Confidence            87 7 7899999874

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.89  E-value=2.7e-09  Score=103.68  Aligned_cols=58  Identities=19%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|..+..++...++.+|+|+|+|+.|++.|++|++.++   +++.++++|.
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~   84 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSY   84 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCG
T ss_pred             CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCH
Confidence            468999999999999999988878899999999999999999998875   4799999874

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.89  E-value=1.2e-08  Score=94.12  Aligned_cols=47  Identities=26%  Similarity=0.176  Sum_probs=39.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      ...+|||||||+|.++..++...+ .+|+|+|+++.+++.|++++..+
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~  102 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKE  102 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcC
Confidence            356899999999998877775544 58999999999999999998654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.89  E-value=1.7e-08  Score=99.40  Aligned_cols=61  Identities=16%  Similarity=-0.033  Sum_probs=55.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.+...++.++|+.+++++|+ +.+++.|++++...+ +.++|+++.+|..
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~  239 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS-GSERIHGHGANLL  239 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT-TGGGEEEEECCCC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC-cccceEEEEcccc
Confidence            356999999999999999999999999999999 999999999999887 7789999998853

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.88  E-value=6.7e-09  Score=96.08  Aligned_cols=59  Identities=15%  Similarity=0.107  Sum_probs=48.6

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCc-HHHHHHH---HHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT-DVALEWA---EKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid-~~al~~A---~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...|+.+.++++|+|+|+| +.+++.|   +++++..+ +. ++.++.+|.
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~-~~-~v~~~~~d~   87 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG-LS-NVVFVIAAA   87 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC-CS-SEEEECCBT
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC-CC-CeEEEEcCH
Confidence            458999999999999999887889999999999 5555555   88888776 54 588887764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.87  E-value=1.7e-08  Score=97.66  Aligned_cols=60  Identities=17%  Similarity=0.160  Sum_probs=52.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..++...+ +.+|+|+|+|+.+++.|++|++.++ +.+ +.++.+|.
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g-~~~-v~~~~~d~  135 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-IEN-VIFVCGDG  135 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-CCS-EEEEESCG
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-CCC-eEEEECCh
Confidence            346899999999999999988776 4789999999999999999999987 664 99988874

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.87  E-value=3e-08  Score=85.85  Aligned_cols=52  Identities=15%  Similarity=0.042  Sum_probs=42.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ...+|||+|||+|.++..++....  +++|+|+++.+++.|+++   .    .++.++.+|
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---~----~~v~~~~~d   68 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK---F----DSVITLSDP   68 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH---C----TTSEEESSG
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh---C----CCcEEEeCC
Confidence            346899999999999988887663  999999999999999998   2    247776554

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.87  E-value=9e-09  Score=96.68  Aligned_cols=46  Identities=28%  Similarity=0.233  Sum_probs=36.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      ...+|||||||+|.....++.  .+. +|+|+|+|+.|++.|+++++.+
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~--~~~~~v~g~D~s~~~l~~a~~~~~~~  101 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAAC--DSFQDITLSDFTDRNREELEKWLKKE  101 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGG--GTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCceEEEeCCCccHHHHHHHH--hhhcceeeccccHHHHHHHHHHHhcC
Confidence            346899999999976544443  333 7999999999999999998765

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.87  E-value=2e-08  Score=89.56  Aligned_cols=57  Identities=23%  Similarity=0.211  Sum_probs=45.6

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||+|||+|.+...++. .++.+++|+|+|+.+++.|++++..++   .++.++.+|.
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~   80 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFV-EDGYKTYGIEISDLQLKKAENFSRENN---FKLNISKGDI   80 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHH-HTTCEEEEEECCHHHHHHHHHHHHHHT---CCCCEEECCT
T ss_pred             CCEEEEECCCCCHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEECch
Confidence            46899999999987444433 367899999999999999999998765   2577887764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.87  E-value=2.3e-08  Score=94.64  Aligned_cols=46  Identities=20%  Similarity=0.143  Sum_probs=37.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~  161 (384)
                      ...+|||||||+|... .++...++.+|+|+|+|+.|++.|+++++.
T Consensus        71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~  116 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQE  116 (289)
T ss_dssp             CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhh
Confidence            3568999999999943 444444677999999999999999997754

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.86  E-value=9.9e-09  Score=93.33  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=51.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCC----CCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHI----SELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l----~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..++... +..+|+|+|+++.+++.|++|+..++ +    .+++.++.+|.
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~  142 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD-PTLLSSGRVQLVVGDG  142 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-THHHHTSSEEEEESCG
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc-ccccCCCcEEEEECCc
Confidence            34689999999999998888775 45799999999999999999998865 3    34688888763

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.86  E-value=5.6e-09  Score=109.08  Aligned_cols=62  Identities=11%  Similarity=0.116  Sum_probs=52.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc---cCCEEEEEeCcHHHHHHHHHHHHHCCCCC-CceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~---~~~~v~gvDid~~al~~A~~Ni~~n~~l~-~~I~~~~~d~~  177 (384)
                      ...+|+|.|||||.+.+.++...   ....++|+|+++.++..|+.|+..++ +. +.+.++++|..
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~~~~I~~gDtL  286 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG-VPIENQFLHNADTL  286 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESCTT
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC-CCcCccceEeccee
Confidence            45699999999999887777664   35799999999999999999999987 64 46888888854

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.86  E-value=4.2e-09  Score=98.06  Aligned_cols=78  Identities=14%  Similarity=0.021  Sum_probs=61.2

Q ss_pred             CCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhh----ccCCEEEEEeCcHHHHHHHH
Q 016734           81 DGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAE  156 (384)
Q Consensus        81 ~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~----~~~~~v~gvDid~~al~~A~  156 (384)
                      .++.++..|+++..+..+.+..            ...+|||||||+|.++..|+..    .++.+|+|+|+++.+++.|+
T Consensus        59 ~~~~~~~~p~~~~~l~~~l~~~------------~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~  126 (236)
T 2bm8_A           59 RGLRMLKDPDTQAVYHDMLWEL------------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA  126 (236)
T ss_dssp             TTEECCSCHHHHHHHHHHHHHH------------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG
T ss_pred             ccccccCCHHHHHHHHHHHHhc------------CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh
Confidence            3667777788877776666543            2358999999999999999876    46889999999999999887


Q ss_pred             HHHHHCCCCCCceEEEEcCCC
Q 016734          157 KNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       157 ~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                            + +.++|+++.+|..
T Consensus       127 ------~-~~~~v~~~~gD~~  140 (236)
T 2bm8_A          127 ------S-DMENITLHQGDCS  140 (236)
T ss_dssp             ------G-GCTTEEEEECCSS
T ss_pred             ------c-cCCceEEEECcch
Confidence                  2 3357999998853

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.86  E-value=6.4e-09  Score=99.91  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=53.6

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccC--CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~--~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      .+..+.+.+..         ....+|||||||+|.+...|+.....  .+|+|+|+|+.+++.|+++.  .    +++++
T Consensus        30 i~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~----~~v~~   94 (279)
T 3uzu_A           30 VIDAIVAAIRP---------ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G----ELLEL   94 (279)
T ss_dssp             HHHHHHHHHCC---------CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G----GGEEE
T ss_pred             HHHHHHHhcCC---------CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C----CCcEE
Confidence            45556666643         13468999999999999999876542  45999999999999999994  2    36999


Q ss_pred             EEcCCC
Q 016734          172 RKVDNS  177 (384)
Q Consensus       172 ~~~d~~  177 (384)
                      +++|..
T Consensus        95 i~~D~~  100 (279)
T 3uzu_A           95 HAGDAL  100 (279)
T ss_dssp             EESCGG
T ss_pred             EECChh
Confidence            999854

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.85  E-value=3.6e-08  Score=90.70  Aligned_cols=84  Identities=15%  Similarity=0.249  Sum_probs=64.2

Q ss_pred             EEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHH
Q 016734           76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA  155 (384)
Q Consensus        76 ~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A  155 (384)
                      ...+..+..+.. |   ..+.++.+.+..         ....+|||||||+|.++..++...+ .+|+|+|+++.+++.|
T Consensus        65 ~~~~~~~~~~~~-~---~~~~~~~~~l~~---------~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a  130 (235)
T 1jg1_A           65 PLPIPAGQTVSA-P---HMVAIMLEIANL---------KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFA  130 (235)
T ss_dssp             CEECSTTCEECC-H---HHHHHHHHHHTC---------CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHH
T ss_pred             CcccCCCceecc-H---HHHHHHHHhcCC---------CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHH
Confidence            455566666554 3   344555566532         1345899999999999999988776 7999999999999999


Q ss_pred             HHHHHHCCCCCCceEEEEcC
Q 016734          156 EKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       156 ~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ++|++.++ +.+ +.++.+|
T Consensus       131 ~~~~~~~~-~~~-v~~~~~d  148 (235)
T 1jg1_A          131 KRNLERAG-VKN-VHVILGD  148 (235)
T ss_dssp             HHHHHHTT-CCS-EEEEESC
T ss_pred             HHHHHHcC-CCC-cEEEECC
Confidence            99999987 654 8888876

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.85  E-value=4.8e-09  Score=109.80  Aligned_cols=119  Identities=23%  Similarity=0.276  Sum_probs=72.6

Q ss_pred             CCCCCCCCCCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHHHH
Q 016734           16 IHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYI   95 (384)
Q Consensus        16 mHprN~y~~~~~df~~La~~~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~yi   95 (384)
                      -|..|.|...--+-..+.+..|+.=+-+..    ...  |                      .....   -...+|+++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~pe~y~~i~~----~~~--~----------------------~~~~~---r~~~~r~~~i   53 (569)
T 4azs_A            5 HHHENLYFQGTKDLNTLVSELPEIYQTIFG----HPE--W----------------------DGDAA---RDCNQRLDLI   53 (569)
T ss_dssp             ------------CHHHHHHHSSCCCBCCTT----CGG--G----------------------TTTCS---BCCHHHHHHH
T ss_pred             cccccccccccccHHHHHhhCHHHHhhhcC----Chh--h----------------------ccccc---cchHHHHHHH
Confidence            367788887667888888887764332211    000  1                      00000   1124577777


Q ss_pred             HHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734           96 HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus        96 ~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ....+.+...       -+++.+|||||||.|.++..||..  |++|+|+|+++.+++.|+..+..++.+  .|+++.++
T Consensus        54 ~~~~~~~~~~-------~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~--~~~~~~~~  122 (569)
T 4azs_A           54 TEQYDNLSRA-------LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDF--AAEFRVGR  122 (569)
T ss_dssp             HHHHHHHHHH-------HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTS--EEEEEECC
T ss_pred             HHHHHHHHhh-------cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCC--ceEEEECC
Confidence            6665554331       135679999999999999888864  889999999999999999999887622  48888876


Q ss_pred             C
Q 016734          176 N  176 (384)
Q Consensus       176 ~  176 (384)
                      .
T Consensus       123 ~  123 (569)
T 4azs_A          123 I  123 (569)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.84  E-value=2.6e-08  Score=89.72  Aligned_cols=60  Identities=17%  Similarity=0.099  Sum_probs=51.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..++... +..+++|+|+++.+++.|++++..++ +. ++.++.+|.
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~-~v~~~~~d~  137 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-YD-NVIVIVGDG  137 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT-CT-TEEEEESCG
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CeEEEECCc
Confidence            34689999999999999888876 55799999999999999999998876 54 488887763

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.84  E-value=1.8e-08  Score=98.02  Aligned_cols=145  Identities=12%  Similarity=0.046  Sum_probs=92.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||+|||+|..+..++... +..+|+|+|+++.+++.+++|+++++ +. +|.++.+|..+.               
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-~~-~v~~~~~D~~~~---------------  165 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-VS-CCELAEEDFLAV---------------  165 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEECCGGGS---------------
T ss_pred             CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCChHhc---------------
Confidence            4589999999999999998875 35799999999999999999999998 64 589988874310               


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                           ... ....++||.|+++||+-...... ..|.......    +
T Consensus       166 -------------------------------------~~~-~~~~~~fD~Vl~D~PcSg~G~~~-r~pd~~~~~~----~  202 (309)
T 2b9e_A          166 -------------------------------------SPS-DPRYHEVHYILLDPSCSGSGMPS-RQLEEPGAGT----P  202 (309)
T ss_dssp             -------------------------------------CTT-CGGGTTEEEEEECCCCCC---------------------
T ss_pred             -------------------------------------Ccc-ccccCCCCEEEEcCCcCCCCCCc-cCCChhhhcc----C
Confidence                                                 000 00114799999999997553321 1122110000    0


Q ss_pred             ccCc--h-HHHHHHHHHHHHHhhccCeEE-E--EEecCCCCHHHHHHHHHHcC
Q 016734          275 CSGG--E-RAFITRIIEDSVALKQTFRWY-T--SMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       275 ~~GG--e-l~Fv~~ii~eS~~l~~~~~w~-t--~~vgk~~~l~~l~~~L~~~g  321 (384)
                      ....  + ..+-.+|++.+..+++ +|.+ +  |-+...++-..+...|+++.
T Consensus       203 ~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~  254 (309)
T 2b9e_A          203 SPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNP  254 (309)
T ss_dssp             --CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTST
T ss_pred             CHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhCC
Confidence            0000  1 2445678888877765 5543 2  33555677777888887764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.83  E-value=3.4e-08  Score=100.56  Aligned_cols=60  Identities=15%  Similarity=0.077  Sum_probs=52.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHH-------HHHHHHCCCCC-CceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA-------EKNVKSNPHIS-ELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A-------~~Ni~~n~~l~-~~I~~~~~d  175 (384)
                      ...+|||||||+|.+++.++...+..+|+|+|+++.+++.|       ++|++.++ +. ++|+++.+|
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G-l~~~nV~~i~gD  309 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG-MRLNNVEFSLKK  309 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT-BCCCCEEEEESS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC-CCCCceEEEEcC
Confidence            45689999999999999998877667999999999999999       99999887 54 679998875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.82  E-value=1.2e-07  Score=89.43  Aligned_cols=60  Identities=12%  Similarity=0.059  Sum_probs=46.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH----------CC-----CCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS----------NP-----HISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~----------n~-----~l~~~I~~~~~d~~  177 (384)
                      ..+|||+|||+|..+..|+..  +++|+|+|+|+.|++.|++....          ++     ....+|+++++|..
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~  143 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF  143 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred             CCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence            468999999999998888865  78999999999999999876431          00     01246888888753

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.81  E-value=7.8e-09  Score=97.54  Aligned_cols=69  Identities=14%  Similarity=0.111  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      ..+..+.+.+..         ....+|||||||+|.+...|+.. +..+|+|+|+|+.+++.|+++ . .    .+++++
T Consensus        18 ~i~~~iv~~~~~---------~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~-~----~~v~~i   81 (249)
T 3ftd_A           18 GVLKKIAEELNI---------EEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G-D----ERLEVI   81 (249)
T ss_dssp             HHHHHHHHHTTC---------CTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C-C----TTEEEE
T ss_pred             HHHHHHHHhcCC---------CCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c-C----CCeEEE
Confidence            345566665532         23468999999999999888765 347999999999999999887 2 1    368999


Q ss_pred             EcCCC
Q 016734          173 KVDNS  177 (384)
Q Consensus       173 ~~d~~  177 (384)
                      ++|..
T Consensus        82 ~~D~~   86 (249)
T 3ftd_A           82 NEDAS   86 (249)
T ss_dssp             CSCTT
T ss_pred             Ecchh
Confidence            98864

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.81  E-value=4e-10  Score=105.12  Aligned_cols=57  Identities=12%  Similarity=0.175  Sum_probs=47.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.++..|+...  .+++|+|+|+.+++.|++|+..    .++++++.+|..
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~----~~~v~~~~~D~~   85 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL----NTRVTLIHQDIL   85 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT----CSEEEECCSCCT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhcc----CCceEEEECChh
Confidence            34589999999999998888763  7999999999999999888752    246888888753

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.81  E-value=3e-08  Score=87.71  Aligned_cols=154  Identities=12%  Similarity=0.072  Sum_probs=95.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhccC---------CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE-EcCCCCCCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLG---------WSFVGSDMTDVALEWAEKNVKSNPHISELIEIR-KVDNSESTPSIQE  185 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~---------~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~-~~d~~~~~p~~~~  185 (384)
                      ..+|||||||+|.++..|+...+.         .+|+|+|+++.+           . + .++.++ .+|..+  ..   
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~-~-~~~~~~~~~d~~~--~~---   84 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P-L-EGATFLCPADVTD--PR---   84 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C-C-TTCEEECSCCTTS--HH---
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c-C-CCCeEEEeccCCC--HH---
Confidence            468999999999999999988654         799999999831           1 2 246776 555321  00   


Q ss_pred             cccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccc
Q 016734          186 SLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTS  265 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~  265 (384)
                                                        ...       .+...+  .+++||+|+||+++........      
T Consensus        85 ----------------------------------~~~-------~~~~~~--~~~~fD~V~~~~~~~~~~~~~~------  115 (196)
T 2nyu_A           85 ----------------------------------TSQ-------RILEVL--PGRRADVILSDMAPNATGFRDL------  115 (196)
T ss_dssp             ----------------------------------HHH-------HHHHHS--GGGCEEEEEECCCCCCCSCHHH------
T ss_pred             ----------------------------------HHH-------HHHHhc--CCCCCcEEEeCCCCCCCCCccc------
Confidence                                              000       000001  2357999999986543211000      


Q ss_pred             cCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCC---eeEEEEEE
Q 016734          266 CGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ---TCRWGLAW  342 (384)
Q Consensus       266 ~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~---t~Rw~~AW  342 (384)
                          ..+     ........+++++.++++++|++.+..........+...++.. +..+.+.+...++   ..+++++-
T Consensus       116 ----~~~-----~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~~~~~~~~e~~~v~~  185 (196)
T 2nyu_A          116 ----DHD-----RLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVRIIKPEASRKESSEVYFLAT  185 (196)
T ss_dssp             ----HHH-----HHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEEEECCC--------EEEEEE
T ss_pred             ----CHH-----HHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceEEECCcccCccCceEEEEee
Confidence                000     0134456788888889999999887766566778888888764 6667777665554   35677776


Q ss_pred             ecCC
Q 016734          343 SFVP  346 (384)
Q Consensus       343 sf~~  346 (384)
                      -|..
T Consensus       186 g~~~  189 (196)
T 2nyu_A          186 QYHG  189 (196)
T ss_dssp             EECC
T ss_pred             ecCC
Confidence            6654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.80  E-value=7e-08  Score=86.65  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=36.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N  158 (384)
                      ...+|||||||+|.+...++..  +.+++|+|+++.+++.|+++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~   73 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEK   73 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTT
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHh
Confidence            3568999999999999888876  58999999999999998765

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.78  E-value=2.4e-07  Score=86.71  Aligned_cols=131  Identities=11%  Similarity=0.024  Sum_probs=86.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|.....++... +..+|+|+|+++.+++...+.++...    +|.++.+|...  |            
T Consensus        76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~----nv~~i~~Da~~--~------------  137 (232)
T 3id6_C           76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRP----NIFPLLADARF--P------------  137 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCT----TEEEEECCTTC--G------------
T ss_pred             CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC----CeEEEEccccc--c------------
Confidence            34689999999999988888764 46799999999999866555554432    48888887532  0            


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                          ..+..   ..++||+|+||-|.-.                    
T Consensus       138 ------------------------------------~~~~~---~~~~~D~I~~d~a~~~--------------------  158 (232)
T 3id6_C          138 ------------------------------------QSYKS---VVENVDVLYVDIAQPD--------------------  158 (232)
T ss_dssp             ------------------------------------GGTTT---TCCCEEEEEECCCCTT--------------------
T ss_pred             ------------------------------------hhhhc---cccceEEEEecCCChh--------------------
Confidence                                                00111   1358999999965310                    


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEec---------CCCCHHHHHHHHHHcCCeEEEEEEe
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVG---------RKSNLKFLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg---------k~~~l~~l~~~L~~~g~~~v~~~e~  330 (384)
                              -...+...+..+++.+|++...+-         .....+...+.|++.||+.+++..+
T Consensus       159 --------~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l  216 (232)
T 3id6_C          159 --------QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINL  216 (232)
T ss_dssp             --------HHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEEC
T ss_pred             --------HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEecc
Confidence                    011122334446777887755431         2334577888999999988877765

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.76  E-value=3.4e-09  Score=100.31  Aligned_cols=70  Identities=10%  Similarity=-0.041  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      ..+.++.+.+..         ....+|||||||+|.+.. ++ +....+|+|+|+|+.+++.|++++..+    ++++++
T Consensus         8 ~i~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i   72 (252)
T 1qyr_A            8 FVIDSIVSAINP---------QKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG----PKLTIY   72 (252)
T ss_dssp             HHHHHHHHHHCC---------CTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG----GGEEEE
T ss_pred             HHHHHHHHhcCC---------CCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC----CceEEE
Confidence            345666666642         134589999999999988 64 332223999999999999999887543    369999


Q ss_pred             EcCCC
Q 016734          173 KVDNS  177 (384)
Q Consensus       173 ~~d~~  177 (384)
                      ++|..
T Consensus        73 ~~D~~   77 (252)
T 1qyr_A           73 QQDAM   77 (252)
T ss_dssp             CSCGG
T ss_pred             ECchh
Confidence            88853

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.76  E-value=5.9e-08  Score=88.31  Aligned_cols=82  Identities=20%  Similarity=0.148  Sum_probs=60.0

Q ss_pred             EEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHH
Q 016734           76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA  155 (384)
Q Consensus        76 ~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A  155 (384)
                      .+.+..+..+.. |   ..+.++.+.+..         ....+|||||||+|.++..++...  .+++|+|+++.+++.|
T Consensus        44 ~~~~~~~~~~~~-~---~~~~~~~~~~~~---------~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a  108 (231)
T 1vbf_A           44 ALPILPGINTTA-L---NLGIFMLDELDL---------HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYA  108 (231)
T ss_dssp             CEEEETTEEECC-H---HHHHHHHHHTTC---------CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHH
T ss_pred             ceeeCCCCccCC-H---HHHHHHHHhcCC---------CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHH
Confidence            344445544433 2   345555565532         234589999999999998888764  7999999999999999


Q ss_pred             HHHHHHCCCCCCceEEEEcCC
Q 016734          156 EKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       156 ~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ++++..++    ++.++.+|.
T Consensus       109 ~~~~~~~~----~v~~~~~d~  125 (231)
T 1vbf_A          109 SKLLSYYN----NIKLILGDG  125 (231)
T ss_dssp             HHHHTTCS----SEEEEESCG
T ss_pred             HHHHhhcC----CeEEEECCc
Confidence            99997664    688888763

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.75  E-value=1.2e-07  Score=86.06  Aligned_cols=46  Identities=22%  Similarity=0.260  Sum_probs=37.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.++..++..      +|+|+++.+++.|+++         ++.++.+|.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~---------~~~~~~~d~   93 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR---------GVFVLKGTA   93 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT---------TCEEEECBT
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc---------CCEEEEccc
Confidence            458999999999988777643      9999999999999887         266777764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.74  E-value=5.4e-08  Score=87.92  Aligned_cols=61  Identities=11%  Similarity=-0.023  Sum_probs=48.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHH----HHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV----KSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni----~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.++..|+...|+.+|+|+|+++.+++.+.+++    ...+ +. ++.++.+|..
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-~~-~v~~~~~d~~   91 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG-LP-NLLYLWATAE   91 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC-CT-TEEEEECCST
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC-CC-ceEEEecchh
Confidence            346899999999999999999888999999999999888644443    3343 33 6899988753

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.74  E-value=2e-07  Score=84.58  Aligned_cols=52  Identities=13%  Similarity=0.155  Sum_probs=43.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.++..++...+  +++|+|+++.+++.|+++.       .++.++.+|.
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~   92 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-------PDATLHQGDM   92 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-------TTCEEEECCT
T ss_pred             CCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-------CCCEEEECCH
Confidence            46899999999999988887754  8999999999999998874       1477887764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.70  E-value=7.4e-08  Score=93.16  Aligned_cols=144  Identities=13%  Similarity=0.036  Sum_probs=94.5

Q ss_pred             CCCeEEEECCcc------cHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE-EEcCCCCCCCccccc
Q 016734          115 DKVKGFDIGTGA------NCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEI-RKVDNSESTPSIQES  186 (384)
Q Consensus       115 ~~~~vLDIGtGs------G~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~-~~~d~~~~~p~~~~~  186 (384)
                      ...+|||+|||+      |.  ..++...+ +.+|+|+|+++.        +       .++++ +++|..+        
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v-------~~v~~~i~gD~~~--------  117 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V-------SDADSTLIGDCAT--------  117 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B-------CSSSEEEESCGGG--------
T ss_pred             CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C-------CCCEEEEECcccc--------
Confidence            345899999944      76  34555555 689999999987        1       13667 8877421        


Q ss_pred             ccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCcccc
Q 016734          187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSC  266 (384)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~  266 (384)
                                                                   + .   ..++||+|+||++....... .      .
T Consensus       118 ---------------------------------------------~-~---~~~~fD~Vvsn~~~~~~g~~-~------~  141 (290)
T 2xyq_A          118 ---------------------------------------------V-H---TANKWDLIISDMYDPRTKHV-T------K  141 (290)
T ss_dssp             ---------------------------------------------C-C---CSSCEEEEEECCCCCC---C-C------S
T ss_pred             ---------------------------------------------C-C---ccCcccEEEEcCCccccccc-c------c
Confidence                                                         0 0   12579999999742111000 0      0


Q ss_pred             CCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEEecCC
Q 016734          267 GGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVP  346 (384)
Q Consensus       267 ~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AWsf~~  346 (384)
                      . ..       ..+.++..+++++.++++.+|+|.+.+-......++.+.|++.||..++++.........++++..|..
T Consensus       142 d-~~-------~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr~~s~e~~lv~~~~~~  213 (290)
T 2xyq_A          142 E-ND-------SKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGANYLG  213 (290)
T ss_dssp             C-CC-------CCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEEEEECS
T ss_pred             c-cc-------chHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcCCCchheEEecCCccC
Confidence            0 00       024567889999999999999998866556677899999999998777766212222366777777764


Q ss_pred             c
Q 016734          347 P  347 (384)
Q Consensus       347 ~  347 (384)
                      .
T Consensus       214 ~  214 (290)
T 2xyq_A          214 K  214 (290)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.70  E-value=3.5e-08  Score=94.38  Aligned_cols=101  Identities=10%  Similarity=0.042  Sum_probs=71.6

Q ss_pred             ccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHH
Q 016734           53 IDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPL  132 (384)
Q Consensus        53 idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~  132 (384)
                      .|+.|+.+++...+.+|...                +.|..-+..+.++..... ..   -..+.+|||||||.|.+++.
T Consensus        90 ~~~~d~~~~~~~~~~~l~~H----------------~STreRLp~lD~fY~~i~-~~---i~~p~~VLDLGCG~GpLAl~  149 (281)
T 3lcv_B           90 VDAGDDEAVRAALLRAMSVH----------------ISTRERLPHLDEFYRELF-RH---LPRPNTLRDLACGLNPLAAP  149 (281)
T ss_dssp             HTTTCHHHHHHHHHHHHTTS----------------HHHHHHGGGHHHHHHHHG-GG---SCCCSEEEETTCTTGGGCCT
T ss_pred             cccCChHHHHHHHHHHHhcC----------------CCHHHHhHhHHHHHHHHH-hc---cCCCceeeeeccCccHHHHH
Confidence            47889999887777666332                333333333333322100 00   02356999999999999988


Q ss_pred             HHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          133 LGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       133 La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ++...+..+++|+|||+.+++.+++|+..++ +.  ..+...|.
T Consensus       150 ~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-~~--~~~~v~D~  190 (281)
T 3lcv_B          150 WMGLPAETVYIASDIDARLVGFVDEALTRLN-VP--HRTNVADL  190 (281)
T ss_dssp             TTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-CC--EEEEECCT
T ss_pred             HHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CC--ceEEEeee
Confidence            8877789999999999999999999999998 54  66666764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.69  E-value=6.2e-08  Score=96.60  Aligned_cols=42  Identities=12%  Similarity=0.115  Sum_probs=36.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N  158 (384)
                      ...+|||||||+|.+...++..  +++++|+|+|+.+++.|+++
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc
Confidence            3569999999999998888754  67999999999999999876

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.68  E-value=7.9e-08  Score=90.96  Aligned_cols=68  Identities=13%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCC
Q 016734           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI  165 (384)
Q Consensus        86 PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l  165 (384)
                      |..|  ..+++|+.+...           ...+|||||||+|.+...|+..  +.+|+|+|+|+.+++.|++    +   
T Consensus        23 p~yp--~~l~~~l~~~~~-----------~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~----~---   80 (257)
T 4hg2_A           23 PRYP--RALFRWLGEVAP-----------ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR----H---   80 (257)
T ss_dssp             CCCC--HHHHHHHHHHSS-----------CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC----C---
T ss_pred             CCcH--HHHHHHHHHhcC-----------CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh----c---
Confidence            5545  345667766542           2458999999999998888754  4699999999999987753    2   


Q ss_pred             CCceEEEEcCC
Q 016734          166 SELIEIRKVDN  176 (384)
Q Consensus       166 ~~~I~~~~~d~  176 (384)
                       .+|.++.++.
T Consensus        81 -~~v~~~~~~~   90 (257)
T 4hg2_A           81 -PRVTYAVAPA   90 (257)
T ss_dssp             -TTEEEEECCT
T ss_pred             -CCceeehhhh
Confidence             2588888874

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.68  E-value=1.8e-07  Score=89.10  Aligned_cols=46  Identities=11%  Similarity=-0.017  Sum_probs=40.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      ...+|||||||+|.++..|+.+  +.+|+|+|+|+.|++.|++|+..+
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS
T ss_pred             CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc
Confidence            3468999999999999888865  679999999999999999998654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.66  E-value=5.2e-07  Score=85.61  Aligned_cols=57  Identities=18%  Similarity=0.168  Sum_probs=41.3

Q ss_pred             CCCeEEEECCcccHHHHH----HHhhccCCEE--EEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734          115 DKVKGFDIGTGANCIYPL----LGASLLGWSF--VGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~----La~~~~~~~v--~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      ...+|||||||+|.+...    ++.+.+++.+  +|+|+|+.|++.|++.+.....+ ..+.+.
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~  114 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFA  114 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEE
Confidence            346899999999976543    3344577755  99999999999999998754213 245544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.64  E-value=1.5e-07  Score=85.98  Aligned_cols=60  Identities=15%  Similarity=0.205  Sum_probs=49.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhcc------CCEEEEEeCcHHHHHHHHHHHHHCCCC----CCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLL------GWSFVGSDMTDVALEWAEKNVKSNPHI----SELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~------~~~v~gvDid~~al~~A~~Ni~~n~~l----~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.++..++....      ..+|+|+|+++.+++.|++|+..++ +    .+++.++.+|.
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~  154 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD-RSMLDSGQLLIVEGDG  154 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH-HHHHHHTSEEEEESCG
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC-ccccCCCceEEEECCc
Confidence            45899999999999988887654      3699999999999999999998753 1    24688888763

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.64  E-value=8.9e-08  Score=87.88  Aligned_cols=56  Identities=23%  Similarity=0.271  Sum_probs=46.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.+...|+...+  +|+|+|+|+.+++.|+++...     .++.++.+|..
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~  111 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTA-----ANISYRLLDGL  111 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCC-----TTEEEEECCTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcc-----cCceEEECccc
Confidence            346899999999999999987655  899999999999999998721     25899988754

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.63  E-value=4.1e-07  Score=87.07  Aligned_cols=62  Identities=16%  Similarity=0.117  Sum_probs=48.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCC-----CCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH-----ISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~-----l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.+...++. .+..+++|+|+++.+++.|+++....+.     ...++.++.+|..
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~  100 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSS  100 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTT
T ss_pred             CCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccc
Confidence            346899999999998877775 4577999999999999999999876420     1236888888753

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.63  E-value=1.1e-07  Score=91.08  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=37.9

Q ss_pred             CCeEEEECCcccH----HHHHHHhhcc----CCEEEEEeCcHHHHHHHHHHH
Q 016734          116 KVKGFDIGTGANC----IYPLLGASLL----GWSFVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       116 ~~~vLDIGtGsG~----I~~~La~~~~----~~~v~gvDid~~al~~A~~Ni  159 (384)
                      ..+|+|+|||||.    |+..|+...+    +++|+|+|||+.||+.|++++
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            4799999999998    6666776544    589999999999999999986

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.63  E-value=9.7e-08  Score=89.00  Aligned_cols=54  Identities=20%  Similarity=0.245  Sum_probs=45.6

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...++...++.+++|+|+++.+++.|+++.       .++.++.+|.
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~  139 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASS  139 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCT
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcch
Confidence            46899999999999988888777889999999999999998864       1367777763

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.62  E-value=1.9e-08  Score=95.75  Aligned_cols=58  Identities=10%  Similarity=0.091  Sum_probs=46.2

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC---CC----CCCceEEEEcCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN---PH----ISELIEIRKVDN  176 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n---~~----l~~~I~~~~~d~  176 (384)
                      .+|||+|||+|..++.++.+  +.+|+++|+++.+++.+++|++..   ..    +.++|+++++|.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            58999999999999998876  668999999999888888876532   11    124799998873

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.61  E-value=3e-07  Score=99.83  Aligned_cols=78  Identities=13%  Similarity=0.133  Sum_probs=60.6

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHC-----
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-----  162 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n-----  162 (384)
                      |.....+.++.+++...         ...+|||||||+|.++..|+... +..+|+|+|+|+.+++.|++++...     
T Consensus       704 PL~eqRle~LLelL~~~---------~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr  774 (950)
T 3htx_A          704 PLSKQRVEYALKHIRES---------SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEA  774 (950)
T ss_dssp             CHHHHHHHHHHHHHHHS---------CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTC
T ss_pred             hHHHHHHHHHHHHhccc---------CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhh
Confidence            45556677777777542         35689999999999998888766 4579999999999999999977532     


Q ss_pred             -CCCCCceEEEEcCCC
Q 016734          163 -PHISELIEIRKVDNS  177 (384)
Q Consensus       163 -~~l~~~I~~~~~d~~  177 (384)
                       + + .+|+++++|..
T Consensus       775 ~g-l-~nVefiqGDa~  788 (950)
T 3htx_A          775 CN-V-KSATLYDGSIL  788 (950)
T ss_dssp             SS-C-SEEEEEESCTT
T ss_pred             cC-C-CceEEEECchH
Confidence             2 2 36999988853

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.56  E-value=1.1e-06  Score=83.61  Aligned_cols=58  Identities=12%  Similarity=0.070  Sum_probs=49.1

Q ss_pred             CCeEEEECCcc---cHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGA---NCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGs---G~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+   |.+...+....++.+|+|+|+|+.+++.|++++..+    +++.++.+|..
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~----~~v~~~~~D~~  138 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD----PNTAVFTADVR  138 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC----TTEEEEECCTT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC----CCeEEEEeeCC
Confidence            35899999999   988766666678999999999999999999998543    46999999864

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.56  E-value=2.9e-07  Score=82.33  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=40.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...+     +. +++|+|+++.+++.|+++.       .++.++.+|.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~   86 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWG   86 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCT
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEccc
Confidence            3568999999999876555     56 9999999999999999886       2467776653

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.53  E-value=4.6e-07  Score=88.44  Aligned_cols=58  Identities=12%  Similarity=0.029  Sum_probs=45.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++.++++.+++++|++ .++.  +++++..+ +.++|+++.+|.
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~-~~~~v~~~~~d~  241 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPD-VAGRWKVVEGDF  241 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGG-GTTSEEEEECCT
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccC-CCCCeEEEecCC
Confidence            3569999999999999999999999999999994 4444  33443344 567899988874

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.47  E-value=7.1e-07  Score=83.04  Aligned_cols=43  Identities=23%  Similarity=0.253  Sum_probs=37.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK  160 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~  160 (384)
                      ..+|||||||+|.++..++..  +.+++|+|+|+.+++.|+++..
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~   97 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV   97 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC
T ss_pred             CCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC
Confidence            458999999999998888765  6799999999999999998753

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.45  E-value=1.1e-06  Score=84.76  Aligned_cols=59  Identities=12%  Similarity=-0.106  Sum_probs=42.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC-----ceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE-----LIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~-----~I~~~~~d~  176 (384)
                      ..+|||||||+|.....++. ...++|+|+|+|+.|++.|++.....+ +..     .+++...+.
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~-~~~~~v~GiD~S~~~l~~A~~~~~~~~-~~~~~~~~~~~f~~~d~  112 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFY-GEIALLVATDPDADAIARGNERYNKLN-SGIKTKYYKFDYIQETI  112 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHC-C----CCCEEEEEECCT
T ss_pred             CCeEEEEecCCcHhHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHhcc-ccccccccccchhhhhc
Confidence            46899999999964433433 345799999999999999999887654 321     256666654

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.44  E-value=8.5e-07  Score=92.30  Aligned_cols=72  Identities=10%  Similarity=0.093  Sum_probs=50.5

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-------------cCCEEEEEeCcHHHHHHHHHHHH
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-------------LGWSFVGSDMTDVALEWAEKNVK  160 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-------------~~~~v~gvDid~~al~~A~~Ni~  160 (384)
                      .+..+.+++..         ....+|+|.+||||.+.+......             ....++|+|+++.++..|+.|+.
T Consensus       205 Vv~lmv~l~~p---------~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~  275 (530)
T 3ufb_A          205 VVRFMVEVMDP---------QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL  275 (530)
T ss_dssp             HHHHHHHHHCC---------CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcc---------CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence            45555566542         234589999999999866554322             13579999999999999999998


Q ss_pred             HCCCCCCceEEEEcCC
Q 016734          161 SNPHISELIEIRKVDN  176 (384)
Q Consensus       161 ~n~~l~~~I~~~~~d~  176 (384)
                      .++ .. ...+..+|.
T Consensus       276 lhg-~~-~~~I~~~dt  289 (530)
T 3ufb_A          276 LHG-LE-YPRIDPENS  289 (530)
T ss_dssp             HHT-CS-CCEEECSCT
T ss_pred             hcC-Cc-ccccccccc
Confidence            887 43 234555553

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.44  E-value=1.7e-06  Score=77.61  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=72.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||||||+|.++..+     ..+++|+|+++.                 ++.++.+|..+                 
T Consensus        68 ~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~-----------------~~~~~~~d~~~-----------------  108 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASSI-----RNPVHCFDLASL-----------------DPRVTVCDMAQ-----------------  108 (215)
T ss_dssp             TSCEEEETCTTCHHHHHC-----CSCEEEEESSCS-----------------STTEEESCTTS-----------------
T ss_pred             CCeEEEECCcCCHHHHHh-----hccEEEEeCCCC-----------------CceEEEecccc-----------------
Confidence            468999999999987665     268999999986                 14455665321                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                             +...+++||+|+|+..++.  .              +    
T Consensus       109 ---------------------------------------~~~~~~~fD~v~~~~~l~~--~--------------~----  129 (215)
T 2zfu_A          109 ---------------------------------------VPLEDESVDVAVFCLSLMG--T--------------N----  129 (215)
T ss_dssp             ---------------------------------------CSCCTTCEEEEEEESCCCS--S--------------C----
T ss_pred             ---------------------------------------CCCCCCCEeEEEEehhccc--c--------------C----
Confidence                                                   0002468999999876531  0              0    


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEEEE-Eec-CCCCHHHHHHHHHHcCCeEEE
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWYTS-MVG-RKSNLKFLISKLRKVGVTIVK  326 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~-~vg-k~~~l~~l~~~L~~~g~~~v~  326 (384)
                             ...++++..++++.+|++.. ... ...+...+.+.|++.|+..+.
T Consensus       130 -------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~  175 (215)
T 2zfu_A          130 -------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVS  175 (215)
T ss_dssp             -------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEE
T ss_pred             -------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEE
Confidence                   23455666677788887644 333 234789999999999997655

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.42  E-value=2.4e-06  Score=84.38  Aligned_cols=53  Identities=15%  Similarity=0.100  Sum_probs=45.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++.++|+.+++++|+ +.+++.|+++        .+|+++.+|.
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~  255 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF--------SGVEHLGGDM  255 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc--------CCCEEEecCC
Confidence            356999999999999999999999999999999 8888776531        3699988874

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.42  E-value=2.6e-06  Score=83.83  Aligned_cols=53  Identities=19%  Similarity=0.058  Sum_probs=44.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++.+.++.+++++|+ +.+++.|++       . .+|+++.+|.
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~  261 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-------L-SGIEHVGGDM  261 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------C-TTEEEEECCT
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-------c-CCCEEEeCCc
Confidence            356999999999999999999999999999999 889887753       1 2588888774

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.40  E-value=9.5e-07  Score=83.53  Aligned_cols=57  Identities=14%  Similarity=-0.045  Sum_probs=48.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .+.+|||||||+|.+++.+.   +..+++|+|||+.+++.|++++..++ .  ...+..+|..
T Consensus       105 ~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g-~--~~~~~v~D~~  161 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKD-W--DFTFALQDVL  161 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTT-C--EEEEEECCTT
T ss_pred             CCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcC-C--CceEEEeecc
Confidence            46799999999999876655   88899999999999999999999986 3  4677777743

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.39  E-value=2.8e-06  Score=82.94  Aligned_cols=52  Identities=12%  Similarity=0.038  Sum_probs=44.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...++.++|+.+++++|+ +.+++.|++    .    .+|+++.+|.
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~~v~~~~~d~  240 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG----S----NNLTYVGGDM  240 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----B----TTEEEEECCT
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc----C----CCcEEEeccc
Confidence            46899999999999999999999999999999 999887754    1    2488888764

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.33  E-value=1.5e-05  Score=78.24  Aligned_cols=59  Identities=17%  Similarity=0.056  Sum_probs=51.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|+|||||+|.+...+++++|+.+++..|. |.+++.|++++...  ..++|+++.+|..
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~--~~~rv~~~~gD~~  238 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ--EEEQIDFQEGDFF  238 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC----CCSEEEEESCTT
T ss_pred             CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc--ccCceeeecCccc
Confidence            45899999999999999999999999999998 78999999998654  4679999998854

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.32  E-value=1.2e-06  Score=83.14  Aligned_cols=59  Identities=5%  Similarity=-0.273  Sum_probs=46.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH--CCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS--NPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~--n~~l~~~I~~~~~d  175 (384)
                      .+.+|||||||+|.++..++.. + .+++++|+|+.+++.|++++..  ++.-..+++++.+|
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D  132 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQL  132 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSG
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEech
Confidence            3469999999999998878766 6 8999999999999999987642  11012478887665

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.26  E-value=7.9e-06  Score=79.85  Aligned_cols=52  Identities=13%  Similarity=0.008  Sum_probs=43.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...++.++|+.+++++|+ +.+++.|++       + .+|+++.+|.
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~  245 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-------N-ENLNFVGGDM  245 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-------C-SSEEEEECCT
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc-------C-CCcEEEeCcc
Confidence            46899999999999999999999999999999 788876653       2 2488888764

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.24  E-value=2.8e-07  Score=85.79  Aligned_cols=44  Identities=14%  Similarity=0.165  Sum_probs=36.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni  159 (384)
                      ...+|||||||+|.++..|++. ...+|+|+|+++.+++.|+++.
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTC
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhC
Confidence            3458999999999998888765 2249999999999999987753

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.23  E-value=9.2e-06  Score=80.09  Aligned_cols=53  Identities=15%  Similarity=0.010  Sum_probs=45.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...++.++|+.+++++|+ +.+++.|++        .++|+++.+|.
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~  253 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ--------FPGVTHVGGDM  253 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh--------cCCeEEEeCCc
Confidence            356999999999999999999999999999999 888776653        14799998874

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.18  E-value=1.5e-06  Score=83.12  Aligned_cols=31  Identities=13%  Similarity=0.011  Sum_probs=27.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ..+|||||||+|..+..++.+   .+|+|+|+++
T Consensus        83 g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~  113 (276)
T 2wa2_A           83 KGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT  113 (276)
T ss_dssp             CEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC
T ss_pred             CCEEEEeccCCCHHHHHHHHc---CCEEEEECch
Confidence            468999999999998888765   5899999998

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.13  E-value=6.7e-06  Score=79.48  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=34.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~  157 (384)
                      ...+|||||||+|.+...|++. ...+|+|+|+++.+++.|.+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHH
T ss_pred             cccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHH
Confidence            3468999999999998777754 34599999999999998644

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.09  E-value=1.3e-06  Score=83.03  Aligned_cols=31  Identities=10%  Similarity=0.007  Sum_probs=27.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ..+|||||||+|..+..++..   .+|+|+|+++
T Consensus        75 g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~  105 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT  105 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC
T ss_pred             CCEEEEeCcCCCHHHHHHHHc---CcEEEEECch
Confidence            468999999999988777765   5899999998

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.06  E-value=1.1e-05  Score=85.75  Aligned_cols=61  Identities=7%  Similarity=-0.040  Sum_probs=47.4

Q ss_pred             CCCeEEEECCcccHHHH---HHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYP---LLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~---~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      +...|||+|||+|.+..   ..+++. ...+|+|||.++. ...|++.++.|+ +.++|+++++|..
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~-~~dkVtVI~gd~e  421 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEE-WGSQVTVVSSDMR  421 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHT-TGGGEEEEESCTT
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhcc-CCCeEEEEeCcce
Confidence            44689999999998743   333332 2347899999985 567899999998 9999999999864

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.99  E-value=9.7e-06  Score=81.84  Aligned_cols=52  Identities=19%  Similarity=0.105  Sum_probs=39.8

Q ss_pred             CCCeEEEECCc------ccHHHHHHHhh-ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTG------ANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtG------sG~I~~~La~~-~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .+.+|||||||      +|..++.++.+ +++.+|+|+|+++.+.        .   ...+|+++++|..
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~---~~~rI~fv~GDa~  274 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V---DELRIRTIQGDQN  274 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G---CBTTEEEEECCTT
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h---cCCCcEEEEeccc
Confidence            45799999999      66666666665 4789999999999872        1   2347999999854

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.82  E-value=1.6e-05  Score=69.58  Aligned_cols=37  Identities=11%  Similarity=0.113  Sum_probs=30.9

Q ss_pred             CCeEEEECCccc-HHHHHHHhhccCCEEEEEeCcHHHHH
Q 016734          116 KVKGFDIGTGAN-CIYPLLGASLLGWSFVGSDMTDVALE  153 (384)
Q Consensus       116 ~~~vLDIGtGsG-~I~~~La~~~~~~~v~gvDid~~al~  153 (384)
                      +.++||||||+| -++..|+.. .+..|+||||++.|++
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT
T ss_pred             CCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc
Confidence            469999999999 488888753 6789999999987755

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.78  E-value=0.0002  Score=65.60  Aligned_cols=58  Identities=14%  Similarity=0.147  Sum_probs=48.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCC--CCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI--SELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l--~~~I~~~~~d~~  177 (384)
                      ..+|||+|||.+.+  .+|. .++.+|+.+|.|++..+.|++|+++++ +  .++|+++.++..
T Consensus        31 a~~VLEiGtGySTl--~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g-~~~~~~I~~~~gda~   90 (202)
T 3cvo_A           31 AEVILEYGSGGSTV--VAAE-LPGKHVTSVESDRAWARMMKAWLAANP-PAEGTEVNIVWTDIG   90 (202)
T ss_dssp             CSEEEEESCSHHHH--HHHT-STTCEEEEEESCHHHHHHHHHHHHHSC-CCTTCEEEEEECCCS
T ss_pred             CCEEEEECchHHHH--HHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCCCceEEEEeCch
Confidence            35899999985444  3443 447899999999999999999999998 7  789999999854

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.74  E-value=6.8e-05  Score=71.97  Aligned_cols=60  Identities=18%  Similarity=0.144  Sum_probs=47.6

Q ss_pred             CeEEEECCcc---cHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          117 VKGFDIGTGA---NCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       117 ~~vLDIGtGs---G~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      .++||||||.   |.+..++....|+++|+++|.|+.|++.|+..+..++  ..++.++++|..+
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--~~~~~~v~aD~~~  142 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--EGRTAYVEADMLD  142 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--SSEEEEEECCTTC
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--CCcEEEEEecccC
Confidence            5899999996   4454444445689999999999999999999987543  3579999999753

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.66  E-value=2.3e-05  Score=75.82  Aligned_cols=29  Identities=17%  Similarity=0.040  Sum_probs=25.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDM  147 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDi  147 (384)
                      ..+|||||||+|.....++.+   .+|+|+|+
T Consensus        83 g~~VLDlGcG~G~~s~~la~~---~~V~gvD~  111 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL---KNVREVKG  111 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS---TTEEEEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHhc---CCEEEEec
Confidence            468999999999998888765   47999999

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.60  E-value=5.4e-05  Score=80.96  Aligned_cols=60  Identities=13%  Similarity=-0.033  Sum_probs=45.2

Q ss_pred             CCeEEEECCcccHHHHH--HHhhc-----------cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPL--LGASL-----------LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~--La~~~-----------~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...|||+|||+|.+...  -|.+.           ...+|+|||.++.|+..++.... |+ ++++|+++++|..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng-~~d~VtVI~gd~e  482 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT-WKRRVTIIESDMR  482 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT-TTTCSEEEESCGG
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC-CCCeEEEEeCchh
Confidence            45899999999998632  22221           23499999999988876666554 76 8999999999854

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.58  E-value=0.00011  Score=70.67  Aligned_cols=53  Identities=13%  Similarity=-0.012  Sum_probs=46.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+||.+||.|.-+..|+.+  +.+|+|+|.|+.|++.|++ ++.     +++.+++++.
T Consensus        23 gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f   75 (285)
T 1wg8_A           23 GGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNF   75 (285)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCG
T ss_pred             CCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCc
Confidence            468999999999999888876  6799999999999999998 643     4799999874

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.57  E-value=0.0002  Score=68.53  Aligned_cols=59  Identities=10%  Similarity=0.035  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      +.++..+..+...          ....|||++||||.+++.++.  .+.+++|+|+++.+++.|++|++..
T Consensus       222 ~~l~~~~i~~~~~----------~~~~vlD~f~GsGt~~~~a~~--~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          222 LELAERLVRMFSF----------VGDVVLDPFAGTGTTLIAAAR--WGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHHCC----------TTCEEEETTCTTTHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC----------CCCEEEECCCCCCHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            5566666665532          345899999999999766553  4679999999999999999999765

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.51  E-value=0.00032  Score=60.80  Aligned_cols=113  Identities=8%  Similarity=-0.058  Sum_probs=72.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||||||.                +++|+++.+++.|+++...      .+.++.+|..+                
T Consensus        12 ~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~------~~~~~~~d~~~----------------   53 (176)
T 2ld4_A           12 AGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN------EGRVSVENIKQ----------------   53 (176)
T ss_dssp             TTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT------TSEEEEEEGGG----------------
T ss_pred             CCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc------CcEEEEechhc----------------
Confidence            356899999996                2499999999999987532      37787776421                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                               +          -+.++  .+++||+|+|+=-+...      .        .+   
T Consensus        54 -------------------------~----------~~~~~--~~~~fD~V~~~~~l~~~------~--------~~---   79 (176)
T 2ld4_A           54 -------------------------L----------LQSAH--KESSFDIILSGLVPGST------T--------LH---   79 (176)
T ss_dssp             -------------------------G----------GGGCC--CSSCEEEEEECCSTTCC------C--------CC---
T ss_pred             -------------------------C----------ccccC--CCCCEeEEEECChhhhc------c--------cC---
Confidence                                     0          00001  35789999998322210      0        00   


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEec---------CCCCHHHHHHHHHHcCCeEEEEEE
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVG---------RKSNLKFLISKLRKVGVTIVKTTE  329 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg---------k~~~l~~l~~~L~~~g~~~v~~~e  329 (384)
                              ...++++..++++++|++.+...         ...+..++.+.|++.|+  +.+.+
T Consensus        80 --------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf--i~~~~  133 (176)
T 2ld4_A           80 --------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL--VEVKE  133 (176)
T ss_dssp             --------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC--EEEEE
T ss_pred             --------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC--cEeec
Confidence                    14556677778888888765321         11237899999999999  44443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.43  E-value=0.00055  Score=67.91  Aligned_cols=146  Identities=8%  Similarity=0.038  Sum_probs=93.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCC-----CceEEEEcCCCCCCCcccccccC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-----ELIEIRKVDNSESTPSIQESLTG  189 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~-----~~I~~~~~d~~~~~p~~~~~~~~  189 (384)
                      ...+|||+|+|.|.=...|+....+..++|+|+++.-++..++|+++.+ ..     ..|.+...|...           
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~-~~~~~~~~~v~v~~~D~~~-----------  215 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYV-PEEIRDGNQVRVTSWDGRK-----------  215 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHS-CTTTTTSSSEEEECCCGGG-----------
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhh-hhhhccCCceEEEeCchhh-----------
Confidence            3458999999999988888877666689999999999999999999875 32     345655544210           


Q ss_pred             CccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhh-hccCCccccCC
Q 016734          190 KSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEE-AGLNPKTSCGG  268 (384)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~-~~~~p~~~~~g  268 (384)
                                                                +...  ..+.||.|++.+|=-.+.-. ...+|.....-
T Consensus       216 ------------------------------------------~~~~--~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~  251 (359)
T 4fzv_A          216 ------------------------------------------WGEL--EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRS  251 (359)
T ss_dssp             ------------------------------------------HHHH--STTCEEEEEEECCCCCHHHHTTCCTTCTTSGG
T ss_pred             ------------------------------------------cchh--ccccCCEEEECCccCCCCCcccccChhhhhhC
Confidence                                                      1111  35689999999996432111 11223221110


Q ss_pred             CcccccccCchH-HHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHc
Q 016734          269 TPEEMVCSGGER-AFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKV  320 (384)
Q Consensus       269 ~~~E~~~~GGel-~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~  320 (384)
                      ...+.    -.+ .+=.+|++.+..+++.+|.+   ||-+...++-.-|...|+++
T Consensus       252 ~~~~~----~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~  303 (359)
T 4fzv_A          252 RKKER----QILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELL  303 (359)
T ss_dssp             GHHHH----HTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHH
T ss_pred             CHHHH----HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhC
Confidence            11000    012 23456888888888887743   56666677777777777654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.28  E-value=0.00022  Score=68.62  Aligned_cols=143  Identities=14%  Similarity=0.144  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      ..|+..|..+ .            ...+||+=+|||.|++.+.+  .+-+++.+|.++.+++.-++|++.    .+++++
T Consensus        81 ~~yf~~l~~~-n------------~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V  141 (283)
T 2oo3_A           81 LEYISVIKQI-N------------LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF----NKKVYV  141 (283)
T ss_dssp             HHHHHHHHHH-S------------SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT----TSCEEE
T ss_pred             HHHHHHHHHh-c------------CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCc----CCcEEE
Confidence            4677766652 1            23589999999999988765  457999999999999999999864    347898


Q ss_pred             EEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCc
Q 016734          172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF  251 (384)
Q Consensus       172 ~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy  251 (384)
                      ++.|...                                                    .+..+....++||+|+.-|||
T Consensus       142 ~~~D~~~----------------------------------------------------~L~~l~~~~~~fdLVfiDPPY  169 (283)
T 2oo3_A          142 NHTDGVS----------------------------------------------------KLNALLPPPEKRGLIFIDPSY  169 (283)
T ss_dssp             ECSCHHH----------------------------------------------------HHHHHCSCTTSCEEEEECCCC
T ss_pred             EeCcHHH----------------------------------------------------HHHHhcCCCCCccEEEECCCC
Confidence            8877321                                                    111122234679999999999


Q ss_pred             ccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccC----eEEEEEecCCCCHHHHHHHHHHcCCeEEEE
Q 016734          252 FESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTF----RWYTSMVGRKSNLKFLISKLRKVGVTIVKT  327 (384)
Q Consensus       252 ~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~----~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~  327 (384)
                      -...+                       ..-+...+.++.. +...    -||- ++. ......+.+.|++.|+ ++-.
T Consensus       170 e~k~~-----------------------~~~vl~~L~~~~~-r~~~Gi~v~WYP-i~~-~~~~~~~~~~l~~~~~-~~l~  222 (283)
T 2oo3_A          170 ERKEE-----------------------YKEIPYAIKNAYS-KFSTGLYCVWYP-VVN-KAWTEQFLRKMREISS-KSVR  222 (283)
T ss_dssp             CSTTH-----------------------HHHHHHHHHHHHH-HCTTSEEEEEEE-ESS-HHHHHHHHHHHHHHCS-SEEE
T ss_pred             CCCcH-----------------------HHHHHHHHHHhCc-cCCCeEEEEEEe-ccc-hHHHHHHHHHHHhcCC-CeEE
Confidence            73211                       1112223333332 2233    3663 333 3457788888888888 6777


Q ss_pred             EEeeC
Q 016734          328 TEFVQ  332 (384)
Q Consensus       328 ~e~~q  332 (384)
                      .|+.-
T Consensus       223 ~el~~  227 (283)
T 2oo3_A          223 IELHL  227 (283)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            76653

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.13  E-value=0.0086  Score=57.77  Aligned_cols=63  Identities=10%  Similarity=0.038  Sum_probs=49.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH-C-CCC-CCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS-N-PHI-SELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~-n-~~l-~~~I~~~~~d~~  177 (384)
                      .+.+||=||-|.|.+.-.+++..+..+++.||||++.++.|++-... + +.+ ..|++++.+|..
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~  148 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGV  148 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTT
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHH
Confidence            56799999999999987777655567999999999999999987532 1 112 358999998854

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.09  E-value=0.0011  Score=62.18  Aligned_cols=60  Identities=20%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      +.++..+.....          .....|||..||||..+....  ..+.+++|+|+++.+++.|++|++.++
T Consensus       199 ~~l~~~~i~~~~----------~~~~~vlD~f~GsGtt~~~a~--~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          199 RDLIERIIRASS----------NPNDLVLDCFMGSGTTAIVAK--KLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHHC----------CTTCEEEESSCTTCHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhC----------CCCCEEEECCCCCCHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            445655555542          234689999999999865544  347799999999999999999998775

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.06  E-value=0.0038  Score=58.86  Aligned_cols=47  Identities=17%  Similarity=0.157  Sum_probs=34.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhh-------ccC-----CEEEEEeCcH---HHHH-----------HHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS-------LLG-----WSFVGSDMTD---VALE-----------WAEKNVKS  161 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~-------~~~-----~~v~gvDid~---~al~-----------~A~~Ni~~  161 (384)
                      ...+|||||||+|.-.+.++..       .|.     .+|+++|.+|   +.+.           .|+.+++.
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~  132 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQ  132 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHh
Confidence            3569999999999877766543       342     5899999887   4333           67777765

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.73  E-value=0.0019  Score=61.93  Aligned_cols=79  Identities=14%  Similarity=0.010  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-----cCCEEEEEeCcH---------------
Q 016734           90 NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-----LGWSFVGSDMTD---------------  149 (384)
Q Consensus        90 ~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-----~~~~v~gvDid~---------------  149 (384)
                      +|...+..+...+...        ..+..||++||..|.-++.++...     ++.+|+++|..+               
T Consensus        89 ~r~~~L~~l~~~v~~~--------~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~  160 (282)
T 2wk1_A           89 KRLENIRQCVEDVIGN--------NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRK  160 (282)
T ss_dssp             HHHHHHHHHHHHHHHT--------TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--------CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccc
Confidence            5666666666655432        246799999999998777776544     367899999631               


Q ss_pred             -----------HHHHHHHHHHHHCCCC-CCceEEEEcCCC
Q 016734          150 -----------VALEWAEKNVKSNPHI-SELIEIRKVDNS  177 (384)
Q Consensus       150 -----------~al~~A~~Ni~~n~~l-~~~I~~~~~d~~  177 (384)
                                 ..++.|++|+++.+ + .++|+++.++..
T Consensus       161 ~~~~~~~~~~~~~~~~ar~n~~~~g-l~~~~I~li~Gda~  199 (282)
T 2wk1_A          161 MALHRRNSVLAVSEEEVRRNFRNYD-LLDEQVRFLPGWFK  199 (282)
T ss_dssp             HCGGGGHHHHCCCHHHHHHHHHHTT-CCSTTEEEEESCHH
T ss_pred             cccccccccchhHHHHHHHHHHHcC-CCcCceEEEEeCHH
Confidence                       14778999999998 7 489999999843

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.67  E-value=0.0052  Score=60.76  Aligned_cols=58  Identities=10%  Similarity=0.115  Sum_probs=47.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ...|||||.|.|++...|+.+....+++++|+|+..+...++.. ..    ++++++++|..+
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~----~~l~ii~~D~l~  116 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG----SPLQILKRDPYD  116 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT----SSCEEECSCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC----CCEEEEECCccc
Confidence            46899999999999999987655568999999999998887765 22    479999999653

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.54  E-value=0.0036  Score=59.73  Aligned_cols=80  Identities=13%  Similarity=0.119  Sum_probs=50.6

Q ss_pred             CCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCCC--------
Q 016734          239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRKS--------  308 (384)
Q Consensus       239 ~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~~--------  308 (384)
                      +++||+|+|||||+...+.... +.     ...  .....  .+.++..+++++.++++.+|++.+++|...        
T Consensus        38 ~~s~DlIvtdPPY~~~~~y~~~-~~-----~~~--~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~~~~~~~g~  109 (297)
T 2zig_A           38 EASVHLVVTSPPYWTLKRYEDT-PG-----QLG--HIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAVARRRFGR  109 (297)
T ss_dssp             TTCEEEEEECCCCCCCC-------------CCH--HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEEEECC----
T ss_pred             CCceeEEEECCCCCCccccCCC-hh-----hhc--ccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCccccccCCc
Confidence            5789999999999865322111 00     000  00111  145567888999999999999988888321        


Q ss_pred             -----CHHHHHHHHHHcCCeEEE
Q 016734          309 -----NLKFLISKLRKVGVTIVK  326 (384)
Q Consensus       309 -----~l~~l~~~L~~~g~~~v~  326 (384)
                           ....+..++++.|+....
T Consensus       110 ~~~~~~~~~l~~~~~~~Gf~~~~  132 (297)
T 2zig_A          110 HLVFPLHADIQVRCRKLGFDNLN  132 (297)
T ss_dssp             EEEECHHHHHHHHHHHTTCEEEE
T ss_pred             ccccccHHHHHHHHHHcCCeeec
Confidence                 124678889999986444

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.19  E-value=0.018  Score=57.54  Aligned_cols=137  Identities=14%  Similarity=0.166  Sum_probs=84.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC--CCC----CCceEEEEcCCCCCCCccccccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN--PHI----SELIEIRKVDNSESTPSIQESLT  188 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n--~~l----~~~I~~~~~d~~~~~p~~~~~~~  188 (384)
                      .+.+||=||-|.|.+...+.+ .+..+++.||||++.++.|++-....  +.+    .++++++.+|..+          
T Consensus       205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~----------  273 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP----------  273 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH----------
T ss_pred             CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH----------
Confidence            356899999999998877765 45579999999999999999864211  001    2357777776321          


Q ss_pred             CCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCC
Q 016734          189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGG  268 (384)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g  268 (384)
                                                                ++.......++||+||.-.+=.+..    ..|.    +
T Consensus       274 ------------------------------------------fl~~~~~~~~~yDvIIvDl~D~~~s----~~p~----g  303 (381)
T 3c6k_A          274 ------------------------------------------VLKRYAKEGREFDYVINDLTAVPIS----TSPE----E  303 (381)
T ss_dssp             ------------------------------------------HHHHHHHHTCCEEEEEEECCSSCCC----CC-------
T ss_pred             ------------------------------------------HHHhhhhccCceeEEEECCCCCccc----Cccc----C
Confidence                                                      1111112356899999874211100    0010    0


Q ss_pred             CcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCC---HHHHHHHHHHc
Q 016734          269 TPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSN---LKFLISKLRKV  320 (384)
Q Consensus       269 ~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~---l~~l~~~L~~~  320 (384)
                      .        ....|.+...+.+.+.++.+|.+.+..+-...   +..+.+.|++.
T Consensus       304 ~--------a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v  350 (381)
T 3c6k_A          304 D--------STWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL  350 (381)
T ss_dssp             ---------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS
T ss_pred             c--------chHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh
Confidence            0        13457777778888889999998765553222   34455556655

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.32  E-value=0.022  Score=55.43  Aligned_cols=44  Identities=18%  Similarity=0.081  Sum_probs=35.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNVK  160 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni~  160 (384)
                      ...++||+.||+|.+...+.  ..+++ +.++|+|+.|++..+.|..
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~--~aG~~~v~~~e~d~~a~~t~~~N~~   54 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALE--SCGAECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHH--HTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCcCHHHHHHH--HCCCeEEEEEeCCHHHHHHHHHHcC
Confidence            35789999999998865554  44665 6689999999999999963

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.25  E-value=0.043  Score=54.87  Aligned_cols=62  Identities=11%  Similarity=0.025  Sum_probs=49.9

Q ss_pred             CCCeEEEECCcccHHHHHHH-hhccC-CEEEEEeCcHHHHHHHHHHHHH--CCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLG-ASLLG-WSFVGSDMTDVALEWAEKNVKS--NPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La-~~~~~-~~v~gvDid~~al~~A~~Ni~~--n~~l~~~I~~~~~d~  176 (384)
                      ....++|+|++.|..+..++ ...+. .+|+++|.+|.+++..++|++.  |+.+.++|.+++.-.
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            45689999999999888777 34444 6999999999999999999998  542326788887654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=94.63  E-value=0.042  Score=54.51  Aligned_cols=52  Identities=13%  Similarity=0.065  Sum_probs=38.4

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .++||+.||+|.+.+-+..  .+++ +.|+|+|+.|++..+.|..       ...++.+|+.
T Consensus         3 ~~vidLFsG~GGlslG~~~--aG~~~v~avE~d~~a~~t~~~N~~-------~~~~~~~DI~   55 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAAR--AGFDVKMAVEIDQHAINTHAINFP-------RSLHVQEDVS   55 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHH--HTCEEEEEECSCHHHHHHHHHHCT-------TSEEECCCGG
T ss_pred             CeEEEEccCcCHHHHHHHH--CCCcEEEEEeCCHHHHHHHHHhCC-------CCceEecChh
Confidence            5799999999988765543  4665 5599999999998888842       2345566643

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=94.00  E-value=0.08  Score=52.05  Aligned_cols=57  Identities=16%  Similarity=-0.037  Sum_probs=46.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ....++|..+|.|.-+..|+... ++.+|+|+|+|+.|++.|+ .+     ..+++++++++..
T Consensus        57 pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-----~~~Rv~lv~~nF~  114 (347)
T 3tka_A           57 PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-----DDPRFSIIHGPFS  114 (347)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-----CCTTEEEEESCGG
T ss_pred             CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-----cCCcEEEEeCCHH
Confidence            34689999999999988888775 6779999999999999984 32     2358999988754

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.75  E-value=0.14  Score=49.41  Aligned_cols=75  Identities=15%  Similarity=0.219  Sum_probs=50.6

Q ss_pred             CCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCC--C--------
Q 016734          239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK--S--------  308 (384)
Q Consensus       239 ~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~--~--------  308 (384)
                      +++||+|+|+|||...... ..      .....     ..-+.+....++++.++++.+|.+...++..  .        
T Consensus        31 ~~svDlI~tDPPY~~~~~~-~y------~~~~~-----~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~~~~~   98 (323)
T 1boo_A           31 EESISLVMTSPPFALQRKK-EY------GNLEQ-----HEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIY   98 (323)
T ss_dssp             SSCEEEEEECCCCSSSCSC-SS------CSCHH-----HHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEEECCH
T ss_pred             CCCeeEEEECCCCCCCccc-cc------CCcCH-----HHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcccccc
Confidence            5789999999999865321 00      00000     0015678888899889999999988888843  1        


Q ss_pred             CHHHHHHHHHHcCCeEE
Q 016734          309 NLKFLISKLRKVGVTIV  325 (384)
Q Consensus       309 ~l~~l~~~L~~~g~~~v  325 (384)
                      .+..+...++..|+...
T Consensus        99 ~~~~i~~~~~~~Gf~~~  115 (323)
T 1boo_A           99 NFRVLIRMIDEVGFFLA  115 (323)
T ss_dssp             HHHHHHHHHHTTCCEEE
T ss_pred             hHHHHHHHHHhCCCEEE
Confidence            25667777888998543

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=93.43  E-value=0.14  Score=50.86  Aligned_cols=51  Identities=12%  Similarity=0.057  Sum_probs=35.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...++|||||..|.-.-.|+.+  +.+|+|||+.+-.     ..+..+    .+|+++++|.
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-----~~l~~~----~~V~~~~~d~  261 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-----QSLMDT----GQVTWLREDG  261 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-----HHHHTT----TCEEEECSCT
T ss_pred             CCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-----hhhccC----CCeEEEeCcc
Confidence            3568999999999987777654  6799999976422     122222    3688887764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.16  E-value=0.11  Score=50.15  Aligned_cols=47  Identities=15%  Similarity=0.008  Sum_probs=38.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      ....|||.-||||..+.+  +...+.+++|+|+++.+++.|+++++..+
T Consensus       252 ~~~~VlDpF~GsGtt~~a--a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          252 PDDLVVDIFGGSNTTGLV--AERESRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             TTCEEEETTCTTCHHHHH--HHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CCCEEEECCCCCCHHHHH--HHHcCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            456899999999988544  34457899999999999999999987654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=92.75  E-value=0.13  Score=50.05  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=35.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK  160 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~  160 (384)
                      +.++||+.||+|.+.+.+......+ .+.++|+|+.|++..+.|..
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~   47 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP   47 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence            3589999999999977665543223 58899999999999999863

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=92.31  E-value=0.19  Score=48.56  Aligned_cols=60  Identities=12%  Similarity=0.014  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH---HHHHHHHHHHHHCC
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD---VALEWAEKNVKSNP  163 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~---~al~~A~~Ni~~n~  163 (384)
                      ..++..+.....          .....|||.-||||..+.+..  ..+.+++|+|+++   ..++.|+++++..+
T Consensus       229 ~~l~~~~i~~~~----------~~~~~vlDpF~GsGtt~~aa~--~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          229 AAVIERLVRALS----------HPGSTVLDFFAGSGVTARVAI--QEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHHS----------CTTCEEEETTCTTCHHHHHHH--HHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhC----------CCCCEEEecCCCCCHHHHHHH--HcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            556666666553          245689999999998864443  4478999999999   99999999987655

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=91.04  E-value=0.86  Score=45.11  Aligned_cols=49  Identities=8%  Similarity=-0.050  Sum_probs=32.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|+|+|||+|...+.+...              +++..++.....+.-...++++..|..
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~--------------ii~~i~~~~~~~~~~~pe~~v~~nDLp  100 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDF--------------IVKHISKRFDAAGIDPPEFTAFFSDLP  100 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHH--------------HHHHHHHHHHHTTCCCCCEEEEEEECT
T ss_pred             CceEEEecCCCCChhHHHHHHH--------------HHHHHHHHHhhcCCCCCceeEEecCCC
Confidence            4679999999999988777654              455444444443312235888887754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=90.78  E-value=0.28  Score=47.62  Aligned_cols=45  Identities=16%  Similarity=0.167  Sum_probs=34.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCE-E-EEEeCcHHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWS-F-VGSDMTDVALEWAEKNV  159 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~-v-~gvDid~~al~~A~~Ni  159 (384)
                      ++.+++|+.||.|.+...+.....+++ + .|+|+|+.|++.-+.|.
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~   55 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNF   55 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHC
Confidence            467999999999988665544322234 4 69999999999999886

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=89.11  E-value=0.56  Score=44.87  Aligned_cols=46  Identities=7%  Similarity=0.061  Sum_probs=34.7

Q ss_pred             CCCCeEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHH
Q 016734          114 GDKVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni  159 (384)
                      ....+++|+.||.|.+...+......+. +.++|+|+.|++.-+.|.
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~   60 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH   60 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC
Confidence            3567999999999988765544333333 589999999998877774

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=88.74  E-value=1.4  Score=43.82  Aligned_cols=21  Identities=14%  Similarity=-0.168  Sum_probs=17.3

Q ss_pred             CCeEEEECCcccHHHHHHHhh
Q 016734          116 KVKGFDIGTGANCIYPLLGAS  136 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~  136 (384)
                      ..+|+|+|||+|...+.+...
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~   73 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRD   73 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHH
Confidence            579999999999887776554

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=88.40  E-value=1  Score=41.58  Aligned_cols=72  Identities=18%  Similarity=0.176  Sum_probs=47.7

Q ss_pred             CCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHH
Q 016734          239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLR  318 (384)
Q Consensus       239 ~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~  318 (384)
                      +++||+|++.|||.......+     .+. +..+      =+.|....++++.++++..|.+...++ ......+...+.
T Consensus        21 ~~~vdlI~~DPPY~~~~~~~d-----~~~-~~~~------y~~~~~~~l~~~~~~Lk~~g~i~v~~~-d~~~~~~~~~~~   87 (260)
T 1g60_A           21 NKSVQLAVIDPPYNLSKADWD-----SFD-SHNE------FLAFTYRWIDKVLDKLDKDGSLYIFNT-PFNCAFICQYLV   87 (260)
T ss_dssp             TTCEEEEEECCCCSSCSSGGG-----CCS-SHHH------HHHHHHHHHHHHHHHEEEEEEEEEEEC-HHHHHHHHHHHH
T ss_pred             ccccCEEEECCCCCCCccccc-----ccC-CHHH------HHHHHHHHHHHHHHHhcCCeEEEEEcC-cHHHHHHHHHHH
Confidence            568999999999975421110     010 0110      156888888888888888888777765 334455667788


Q ss_pred             HcCCe
Q 016734          319 KVGVT  323 (384)
Q Consensus       319 ~~g~~  323 (384)
                      +.|+.
T Consensus        88 ~~gf~   92 (260)
T 1g60_A           88 SKGMI   92 (260)
T ss_dssp             HTTCE
T ss_pred             hhccc
Confidence            88884

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=86.42  E-value=0.85  Score=44.28  Aligned_cols=44  Identities=18%  Similarity=0.075  Sum_probs=33.9

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni  159 (384)
                      +.+++|+.||.|.+...+.....+++ +.|+|+|+.|.+.-+.|.
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~   47 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF   47 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC
Confidence            45899999999988766544333334 679999999998888875

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=84.95  E-value=1.3  Score=45.38  Aligned_cols=44  Identities=16%  Similarity=0.057  Sum_probs=34.8

Q ss_pred             CCCCeEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHH
Q 016734          114 GDKVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni  159 (384)
                      ....+++|+.||.|.+..-+  +..+++ +.++|+|+.|++.-+.|.
T Consensus        86 ~~~~~viDLFaG~GGlslG~--~~aG~~~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           86 HYAFRFIDLFAGIGGIRRGF--ESIGGQCVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             CCSEEEEEESCTTSHHHHHH--HTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred             CccceEEEecCCccHHHHHH--HHCCCEEEEEEeCCHHHHHHHHHhc
Confidence            34679999999999875444  445665 678999999998888875

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=83.82  E-value=21  Score=34.58  Aligned_cols=65  Identities=9%  Similarity=-0.112  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCC---eeEEEEEEecCCc
Q 016734          280 RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ---TCRWGLAWSFVPP  347 (384)
Q Consensus       280 l~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~---t~Rw~~AWsf~~~  347 (384)
                      ..+++..++-+.+.++.+|-|..=+=.-+.-+.+ ..+++ .|+.|++.. ..-+   ..-++|+.-|...
T Consensus       193 ~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L-~~lrk-~F~~VK~fK-~ASRa~SsEvYLVG~gfKg~  260 (344)
T 3r24_A          193 EGFFTYLCGFIKQKLALGGSIAVKITEHSWNADL-YKLMG-HFSWWTAFV-TNVNASSSEAFLIGANYLGK  260 (344)
T ss_dssp             CTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHH-HHHHT-TEEEEEEEE-EGGGTTSSCEEEEEEEECSS
T ss_pred             HHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHH-HHHHh-hCCeEEEEC-CCCCCCCeeEEEEeeeccCC
Confidence            3466666677777888888876555433443444 44554 777777775 2333   2557888888765

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=82.40  E-value=1.2  Score=42.26  Aligned_cols=39  Identities=15%  Similarity=0.166  Sum_probs=31.1

Q ss_pred             eEEEECCcccHHHHHHHhhccCCEE-EEEeCcHHHHHHHHHH
Q 016734          118 KGFDIGTGANCIYPLLGASLLGWSF-VGSDMTDVALEWAEKN  158 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~~v-~gvDid~~al~~A~~N  158 (384)
                      ++||+-||.|.+..  +.+..|+++ .|+|+|+.|++.-+.|
T Consensus         2 kvidLFsG~GG~~~--G~~~aG~~~v~a~e~d~~a~~ty~~N   41 (331)
T 3ubt_Y            2 NLISLFSGAGGLDL--GFQKAGFRIICANEYDKSIWKTYESN   41 (331)
T ss_dssp             EEEEESCTTCHHHH--HHHHTTCEEEEEEECCTTTHHHHHHH
T ss_pred             eEEEeCcCccHHHH--HHHHCCCEEEEEEeCCHHHHHHHHHH
Confidence            69999999998754  444556765 5899999999888777

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=81.58  E-value=2.3  Score=40.34  Aligned_cols=61  Identities=13%  Similarity=0.071  Sum_probs=46.3

Q ss_pred             CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ..++|=.|+++| |+..++..+  .+++|++++.+++.++.+...+...+ ...++.++..|+.+
T Consensus         8 ~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~~   70 (319)
T 3ioy_A            8 GRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG-SGPEVMGVQLDVAS   70 (319)
T ss_dssp             TCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEECCTTC
T ss_pred             CCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCCeEEEEECCCCC
Confidence            457888887766 777777655  58999999999999888877776654 33468889888653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	3e-55

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  180 bits (457), Expect = 3e-55
 Identities = 103/301 (34%), Positives = 143/301 (47%), Gaps = 64/301 (21%)

Query: 53  IDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSR 112
           +++ D  A R LT  LL  D GL+  IP  +L PTVP R NYIHW+EDL+          
Sbjct: 3   LNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSD---- 58

Query: 113 NGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR 172
                +G DIGTGA+CIYPLLGA+L GW F+ +++ D+   +A+KNV+ N     +  ++
Sbjct: 59  KSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVK 118

Query: 173 KVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL 232
               +    +++E                                               
Sbjct: 119 VPQKTLLMDALKEESEII------------------------------------------ 136

Query: 233 VGVVRDGEQFDFCICNPPFFESMEEAGL---------NPKTSCGGTPEEMVCSGGERAFI 283
                    +DFC+CNPPFF +  EA            P +   G   E++  GGE  F+
Sbjct: 137 ---------YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 187

Query: 284 TRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWS 343
            RII DS+ LK+  RWY+ M+G+K +L  L  +LR  GV  V  TEF QG+T RW LAWS
Sbjct: 188 KRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWS 247

Query: 344 F 344
           F
Sbjct: 248 F 248

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d2h00a1	250	Methyltransferase 10 domain containing protein MET	100.0
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	100.0
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.97
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.64
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.59
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.56
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.51
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.48
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.45
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.41
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.4
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.34
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.33
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.31
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.29
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.29
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.27
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.27
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.26
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.26
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.23
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.22
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.19
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.19
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.17
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.1
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.08
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.08
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.07
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.05
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.05
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.04
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.0
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.99
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.98
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.98
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.98
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.97
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.95
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.95
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.94
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.94
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.9
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.88
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.88
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.87
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.86
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.86
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.84
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.84
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.79
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.78
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.77
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.77
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.76
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.72
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.72
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.72
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.69
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.69
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.66
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.61
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.6
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.56
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.54
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.49
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	98.41
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.39
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.38
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.38
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.34
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.31
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.29
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.21
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.2
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.2
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.15
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.12
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.04
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.02
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.99
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.97
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.95
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.87
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.87
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.74
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.74
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.73
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.59
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.53
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.44
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.31
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.97
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.93
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	96.82
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.68
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.61
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.3
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	95.92
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.59
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.03
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.78
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	94.39
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	92.45
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	89.89
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	88.79
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	87.97
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	87.81
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	87.64
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	87.51
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.46
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.62
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	85.69
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	83.08
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	81.28
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	80.82

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-61  Score=459.05  Aligned_cols=240  Identities=45%  Similarity=0.797  Sum_probs=202.7

Q ss_pred             ccccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHH
Q 016734           51 PRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY  130 (384)
Q Consensus        51 ~~idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~  130 (384)
                      ++|||+|++|+++||++||++|||++|+||+++||||+|.|++|++|+.+++.....    ......++||||||||||+
T Consensus         1 ~~idf~~~~a~~~l~~~ll~~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~----~~~~~~~~LDiGtGsg~I~   76 (250)
T d2h00a1           1 VSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDS----DKSTLRRGIDIGTGASCIY   76 (250)
T ss_dssp             CCSCTTSHHHHHHHHHHHHHHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCG----GGCCCCEEEEESCTTTTHH
T ss_pred             CeeecCChHHHHHHHHHHHHHHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhcc----CccccceEEEeCCCchHHH
Confidence            479999999999999999999999999999999999999999999999999865321    1234579999999999999


Q ss_pred             HHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCC
Q 016734          131 PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEP  210 (384)
Q Consensus       131 ~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (384)
                      ++|+++.++|+|+|+|||++|+++|++|++.|+ +++++.+++++..+                                
T Consensus        77 ~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~-l~~~~~~~~~~~~~--------------------------------  123 (250)
T d2h00a1          77 PLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKT--------------------------------  123 (250)
T ss_dssp             HHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTC--------------------------------
T ss_pred             HHHHHhCCCccccceecCHHHHHHHHHHHHHhC-CCcceeeeeeccHH--------------------------------
Confidence            999999999999999999999999999999998 99999999886432                                


Q ss_pred             CCCCCCCCCcCCCCCCCCCCcccccc-cCCCcEEEEEECCCcccchhhhc---------cCCccccCCCcccccccCchH
Q 016734          211 SSSSSFNLPAGAQSSYHGPPVLVGVV-RDGEQFDFCICNPPFFESMEEAG---------LNPKTSCGGTPEEMVCSGGER  280 (384)
Q Consensus       211 ~~~~~f~~~~~~~~~~~~~~i~~~~~-~~~~~fD~i~cNPPy~~s~~~~~---------~~p~~~~~g~~~E~~~~GGel  280 (384)
                                         .++..+. ...++||+||||||||++.++..         .+|..++.|...||+++|||+
T Consensus       124 -------------------~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~  184 (250)
T d2h00a1         124 -------------------LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGEL  184 (250)
T ss_dssp             -------------------SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHH
T ss_pred             -------------------hhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchh
Confidence                               0111111 13568999999999998765431         247778889999999999999


Q ss_pred             HHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEEecCC
Q 016734          281 AFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVP  346 (384)
Q Consensus       281 ~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AWsf~~  346 (384)
                      .|+++|+++|..++++++|||+|+|++++++++.++|++.|+.++++++|.||+|.||+|||||.+
T Consensus       185 ~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g~~~i~~ie~~qG~~~r~iiaWsf~~  250 (250)
T d2h00a1         185 EFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWSFYD  250 (250)
T ss_dssp             HHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEEESCC
T ss_pred             hHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcCCCeEEEEEecCCCEeEEEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999974

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.6e-36  Score=284.73  Aligned_cols=197  Identities=19%  Similarity=0.166  Sum_probs=165.4

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ++|||++|.|.++||||| |+||.+|+++.....          ..+.+|||+|||||||+++++...|+++|+|+|+|+
T Consensus        74 ~~F~~~~~~v~~~VlIPR-peTE~lv~~~l~~~~----------~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~  142 (274)
T d2b3ta1          74 REFWSLPLFVSPATLIPR-PDTECLVEQALARLP----------EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMP  142 (274)
T ss_dssp             EEETTEEEECCTTSCCCC-TTHHHHHHHHHHHSC----------SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSH
T ss_pred             EEEeeeEEEEeccccccc-cchhhhhhhHhhhhc----------ccccceeeeehhhhHHHHHHHhhCCcceeeeccchh
Confidence            679999999999999999 999999998876543          245689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      .|+++|++|+++++ ++ +|.++++|..+                                                   
T Consensus       143 ~Al~~A~~Na~~~~-~~-~v~~~~~d~~~---------------------------------------------------  169 (274)
T d2b3ta1         143 DAVSLAQRNAQHLA-IK-NIHILQSDWFS---------------------------------------------------  169 (274)
T ss_dssp             HHHHHHHHHHHHHT-CC-SEEEECCSTTG---------------------------------------------------
T ss_pred             HHHhHHHHHHHHhC-cc-cceeeeccccc---------------------------------------------------
Confidence            99999999999998 64 69999887431                                                   


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK  307 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~  307 (384)
                          .+  .+++||+|||||||+++.+.... +..  ...+..+++.||  ++.|++++++++..+++.+|++.+++| .
T Consensus       170 ----~~--~~~~fDlIvsNPPYi~~~~~~~~-~~v--~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig-~  239 (274)
T d2b3ta1         170 ----AL--AGQQFAMIVSNPPYIDEQDPHLQ-QGD--VRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-W  239 (274)
T ss_dssp             ----GG--TTCCEEEEEECCCCBCTTCHHHH-SSG--GGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-S
T ss_pred             ----cc--CCCceeEEEecchhhhhhhhccc-ccc--cccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC-c
Confidence                12  24689999999999997653221 110  012333444555  589999999999999999999999999 7


Q ss_pred             CCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEE
Q 016734          308 SNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA  341 (384)
Q Consensus       308 ~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~A  341 (384)
                      +|.+.+.+++++.|+..+++.+|.+|+ .|.++|
T Consensus       240 ~q~~~v~~~l~~~gf~~i~~~kDl~g~-~R~v~~  272 (274)
T d2b3ta1         240 QQGEAVRQAFILAGYHDVETCRDYGDN-ERVTLG  272 (274)
T ss_dssp             SCHHHHHHHHHHTTCTTCCEEECTTSS-EEEEEE
T ss_pred             hHHHHHHHHHHHCCCCeEEEEECCCCC-ceEEEE
Confidence            899999999999999999999999997 888876

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=4.4e-32  Score=258.77  Aligned_cols=190  Identities=20%  Similarity=0.262  Sum_probs=155.0

Q ss_pred             hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ++|||++|.|.++||||| |+||.+|+++.+.....         ...+++|+|||+|||+++++ +.++++|+|+|+|+
T Consensus        75 ~~F~~~~f~v~~~vlIPR-peTE~lv~~~~~~~~~~---------~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~  143 (271)
T d1nv8a_          75 KEFMGLSFLVEEGVFVPR-PETEELVELALELIRKY---------GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSS  143 (271)
T ss_dssp             EEETTEEEECCTTSCCCC-TTHHHHHHHHHHHHHHH---------TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCH
T ss_pred             EEEeeeEEEEecCccCch-hhhhhhhhhhhhhhccc---------cccEEEEeeeeeehhhhhhh-hcccceeeechhhh
Confidence            779999999999999999 99999999999877542         34589999999999999887 57899999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  229 (384)
                      +|+++|++|++.++ +.+++.++.++..+                                                   
T Consensus       144 ~Al~~A~~Na~~~~-~~~~~~i~~~~~~~---------------------------------------------------  171 (271)
T d1nv8a_         144 KAVEIARKNAERHG-VSDRFFVRKGEFLE---------------------------------------------------  171 (271)
T ss_dssp             HHHHHHHHHHHHTT-CTTSEEEEESSTTG---------------------------------------------------
T ss_pred             hHHHHHHHHHHHcC-CCceeEEeeccccc---------------------------------------------------
Confidence            99999999999998 88899988877432                                                   


Q ss_pred             CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCch--HHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGE--RAFITRIIEDSVALKQTFRWYTSMVGRK  307 (384)
Q Consensus       230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGe--l~Fv~~ii~eS~~l~~~~~w~t~~vgk~  307 (384)
                          .+....++||+|||||||+++.+.  + |...  ..+..+++.||+  +.|+++|+.   ++++++||+.+++| .
T Consensus       172 ----~~~~~~~~fDlIVsNPPYI~~~~~--l-~~~~--~~EP~~AL~gg~dGl~~~r~i~~---~~L~~~G~l~~Eig-~  238 (271)
T d1nv8a_         172 ----PFKEKFASIEMILSNPPYVKSSAH--L-PKDV--LFEPPEALFGGEDGLDFYREFFG---RYDTSGKIVLMEIG-E  238 (271)
T ss_dssp             ----GGGGGTTTCCEEEECCCCBCGGGS--C-TTSC--CCSCHHHHBCTTTSCHHHHHHHH---HCCCTTCEEEEECC-T
T ss_pred             ----ccccccCcccEEEEcccccCcccc--c-ceee--eeccccccccccchHHHHHHHHH---HhcCCCCEEEEEEC-H
Confidence                111124689999999999986532  1 1111  244555566664  999999985   47889999999999 8


Q ss_pred             CCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEE
Q 016734          308 SNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA  341 (384)
Q Consensus       308 ~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~A  341 (384)
                      +|.+.+.+++++.|+     .+|.+|+ .|++++
T Consensus       239 ~Q~~~v~~l~~~~g~-----~kDl~g~-~R~~~~  266 (271)
T d1nv8a_         239 DQVEELKKIVSDTVF-----LKDSAGK-YRFLLL  266 (271)
T ss_dssp             TCHHHHTTTSTTCEE-----EECTTSS-EEEEEE
T ss_pred             HHHHHHHHHHHhCCE-----EeccCCC-cEEEEE
Confidence            999999999887664     6899998 788776

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=4.1e-15  Score=132.55  Aligned_cols=149  Identities=20%  Similarity=0.227  Sum_probs=107.0

Q ss_pred             EEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHH
Q 016734           76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA  155 (384)
Q Consensus        76 ~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A  155 (384)
                      .|..++|++.|.-.+..  -..+.+.+..         ....+|||||||+|.++..++..  ..+++|+|+|+.+++.|
T Consensus        24 ~~~t~~gvF~~~~~d~~--t~lLi~~l~~---------~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a   90 (194)
T d1dusa_          24 KFKTDSGVFSYGKVDKG--TKILVENVVV---------DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLA   90 (194)
T ss_dssp             EEEEETTSTTTTSCCHH--HHHHHHHCCC---------CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHH
T ss_pred             EEEcCCCccCCCCcCHH--HHHHHHhCCc---------CCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhH
Confidence            46668899887633321  1112333321         24568999999999998888754  45899999999999999


Q ss_pred             HHHHHHCCCCCC-ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccc
Q 016734          156 EKNVKSNPHISE-LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVG  234 (384)
Q Consensus       156 ~~Ni~~n~~l~~-~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~  234 (384)
                      ++|++.|+ +.. +++++.+|..+                                                       .
T Consensus        91 ~~n~~~~~-l~~~~i~~~~~d~~~-------------------------------------------------------~  114 (194)
T d1dusa_          91 KENIKLNN-LDNYDIRVVHSDLYE-------------------------------------------------------N  114 (194)
T ss_dssp             HHHHHHTT-CTTSCEEEEECSTTT-------------------------------------------------------T
T ss_pred             HHHHHHhC-CccceEEEEEcchhh-------------------------------------------------------h
Confidence            99999997 654 68888887431                                                       1


Q ss_pred             cccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHH
Q 016734          235 VVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI  314 (384)
Q Consensus       235 ~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~  314 (384)
                      +  .+++||+|+|||||+...                         ..+..+++++.++++++|.+.+++......+.+.
T Consensus       115 ~--~~~~fD~Ii~~~p~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~  167 (194)
T d1dusa_         115 V--KDRKYNKIITNPPIRAGK-------------------------EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLA  167 (194)
T ss_dssp             C--TTSCEEEEEECCCSTTCH-------------------------HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHH
T ss_pred             h--ccCCceEEEEcccEEecc-------------------------hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHH
Confidence            1  256899999999996431                         2356788889899999998777777555556666


Q ss_pred             HHHHHc
Q 016734          315 SKLRKV  320 (384)
Q Consensus       315 ~~L~~~  320 (384)
                      ..+++.
T Consensus       168 ~~l~~~  173 (194)
T d1dusa_         168 KYMKDV  173 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.59  E-value=2e-14  Score=127.31  Aligned_cols=144  Identities=15%  Similarity=0.095  Sum_probs=109.1

Q ss_pred             CCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH
Q 016734           82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (384)
Q Consensus        82 ~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~  161 (384)
                      +--||. |.++..-..+...+..         ....+|||||||+|.+++.++..  ..+|+|+|+|+.+++.|++|+++
T Consensus        10 ~~~~~~-~t~~eir~~il~~l~~---------~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~   77 (186)
T d1l3ia_          10 NPSVPG-PTAMEVRCLIMCLAEP---------GKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQR   77 (186)
T ss_dssp             CTTSCC-CCCHHHHHHHHHHHCC---------CTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCC-CChHHHHHHHHHhcCC---------CCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHH
Confidence            345676 7777766666666643         24568999999999999888754  45999999999999999999999


Q ss_pred             CCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCc
Q 016734          162 NPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQ  241 (384)
Q Consensus       162 n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~  241 (384)
                      ++ +.++|+++++|..+                                                    .+    ...+.
T Consensus        78 ~g-l~~~v~~~~gda~~----------------------------------------------------~~----~~~~~  100 (186)
T d1l3ia_          78 HG-LGDNVTLMEGDAPE----------------------------------------------------AL----CKIPD  100 (186)
T ss_dssp             TT-CCTTEEEEESCHHH----------------------------------------------------HH----TTSCC
T ss_pred             cC-CCcceEEEECchhh----------------------------------------------------cc----cccCC
Confidence            98 88899999987321                                                    11    13468


Q ss_pred             EEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcC
Q 016734          242 FDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       242 fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g  321 (384)
                      ||.|+||.+...                             +..+++...++++.+|++.......++...+.+.+++.|
T Consensus       101 ~D~v~~~~~~~~-----------------------------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~  151 (186)
T d1l3ia_         101 IDIAVVGGSGGE-----------------------------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLG  151 (186)
T ss_dssp             EEEEEESCCTTC-----------------------------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTT
T ss_pred             cCEEEEeCcccc-----------------------------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcC
Confidence            999999864321                             234567777788889988766655677888889999988


Q ss_pred             Ce
Q 016734          322 VT  323 (384)
Q Consensus       322 ~~  323 (384)
                      +.
T Consensus       152 ~~  153 (186)
T d1l3ia_         152 FD  153 (186)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=2.7e-15  Score=132.24  Aligned_cols=86  Identities=15%  Similarity=0.225  Sum_probs=63.6

Q ss_pred             cCCcEEEecCCCccCCCcCH--HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           72 DHGLNWWIPDGQLCPTVPNR--SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~r--~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      +-|+++.+|.+ +-|+ |++  |.+..|+...+.           +..+|||+|||+|++++.++.  .+++++++|+|+
T Consensus         9 ~kg~~l~~~~~-~Rpt-~~~v~e~lf~~l~~~~~-----------~g~~vLDl~~G~G~~~i~a~~--~ga~vv~vD~~~   73 (171)
T d1ws6a1           9 ARGVALKVPAS-ARPS-PVRLRKALFDYLRLRYP-----------RRGRFLDPFAGSGAVGLEAAS--EGWEAVLVEKDP   73 (171)
T ss_dssp             GTTCEECCCTT-CCCC-CHHHHHHHHHHHHHHCT-----------TCCEEEEETCSSCHHHHHHHH--TTCEEEEECCCH
T ss_pred             ccCCEeCCCCC-CCCC-cHHHHHHHHHHhhcccc-----------CCCeEEEeccccchhhhhhhh--ccchhhhcccCH
Confidence            34778888776 5555 553  455555554331           345899999999999876554  367999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEE
Q 016734          150 VALEWAEKNVKSNPHISELIEIRK  173 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~  173 (384)
                      ++++.|++|++.++ +++++....
T Consensus        74 ~a~~~~~~N~~~~~-~~~~v~~~~   96 (171)
T d1ws6a1          74 EAVRLLKENVRRTG-LGARVVALP   96 (171)
T ss_dssp             HHHHHHHHHHHHHT-CCCEEECSC
T ss_pred             HHHhhhhHHHHhhc-cccceeeee
Confidence            99999999999998 776655433

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=1.5e-13  Score=123.99  Aligned_cols=72  Identities=11%  Similarity=0.025  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (384)
Q Consensus        91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~  170 (384)
                      -...+.|+......         -+..+|||+|||+|++++.++.+ ...+|+|+|+|+.+++.|++|++.++ .  ++.
T Consensus        31 ~a~~~~~~~~~~~d---------l~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~-~--~~~   97 (201)
T d1wy7a1          31 AASELLWLAYSLGD---------IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFK-G--KFK   97 (201)
T ss_dssp             HHHHHHHHHHHTTS---------STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGT-T--SEE
T ss_pred             HHHHHHHHHHhcCC---------CCCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcC-C--Cce
Confidence            34455566665532         24568999999999998776643 33599999999999999999998876 3  477


Q ss_pred             EEEcC
Q 016734          171 IRKVD  175 (384)
Q Consensus       171 ~~~~d  175 (384)
                      ++.+|
T Consensus        98 ~~~~d  102 (201)
T d1wy7a1          98 VFIGD  102 (201)
T ss_dssp             EEESC
T ss_pred             EEECc
Confidence            77765

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.48  E-value=2.2e-13  Score=127.38  Aligned_cols=139  Identities=15%  Similarity=0.091  Sum_probs=102.0

Q ss_pred             CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      +|.|...++++.+.+.           ...+|||+|||+|.+++.+++  .+++|+|+|+|+.|++.|++|++.|+ +. 
T Consensus       104 H~TT~l~l~~l~~~~~-----------~g~~VLDiGcGsG~l~i~aa~--~g~~V~gvDis~~av~~A~~na~~n~-~~-  168 (254)
T d2nxca1         104 HETTRLALKALARHLR-----------PGDKVLDLGTGSGVLAIAAEK--LGGKALGVDIDPMVLPQAEANAKRNG-VR-  168 (254)
T ss_dssp             SHHHHHHHHHHHHHCC-----------TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHHTT-CC-
T ss_pred             cchhhHHHHHHHhhcC-----------ccCEEEEcccchhHHHHHHHh--cCCEEEEEECChHHHHHHHHHHHHcC-Cc-
Confidence            6788888998887653           245899999999998876653  46899999999999999999999998 64 


Q ss_pred             ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734          168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC  247 (384)
Q Consensus       168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c  247 (384)
                       +.+++++..                                                       ..+  ..++||+|+|
T Consensus       169 -~~~~~~d~~-------------------------------------------------------~~~--~~~~fD~V~a  190 (254)
T d2nxca1         169 -PRFLEGSLE-------------------------------------------------------AAL--PFGPFDLLVA  190 (254)
T ss_dssp             -CEEEESCHH-------------------------------------------------------HHG--GGCCEEEEEE
T ss_pred             -eeEEecccc-------------------------------------------------------ccc--cccccchhhh
Confidence             456666521                                                       011  2468999999


Q ss_pred             CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEE-EecCCCCHHHHHHHHHHcCCeEEE
Q 016734          248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLRKVGVTIVK  326 (384)
Q Consensus       248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~-~vgk~~~l~~l~~~L~~~g~~~v~  326 (384)
                      |-.+                             ..+..++++..+.++++|.+.. -+- ..+...+.+.++++|+..++
T Consensus       191 ni~~-----------------------------~~l~~l~~~~~~~LkpGG~lilSgil-~~~~~~v~~~~~~~Gf~~~~  240 (254)
T d2nxca1         191 NLYA-----------------------------ELHAALAPRYREALVPGGRALLTGIL-KDRAPLVREAMAGAGFRPLE  240 (254)
T ss_dssp             ECCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEE-GGGHHHHHHHHHHTTCEEEE
T ss_pred             cccc-----------------------------ccHHHHHHHHHHhcCCCcEEEEEecc-hhhHHHHHHHHHHCCCEEEE
Confidence            9421                             1134455666667778877643 222 46789999999999998766


Q ss_pred             EEE
Q 016734          327 TTE  329 (384)
Q Consensus       327 ~~e  329 (384)
                      ..+
T Consensus       241 ~~~  243 (254)
T d2nxca1         241 EAA  243 (254)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.45  E-value=9.9e-14  Score=125.21  Aligned_cols=71  Identities=17%  Similarity=-0.020  Sum_probs=53.4

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~  168 (384)
                      |+-..++.|..+.+..         -++.+|||+|||+|++++.++.. ...+|+|+|+|+.|++.|++|+.       .
T Consensus        31 ~~~a~~~~~~~~~~~d---------l~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~~-------~   93 (197)
T d1ne2a_          31 ASTAAYFLIEIYNDGN---------IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-------G   93 (197)
T ss_dssp             HHHHHHHHHHHHHHTS---------SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-------T
T ss_pred             HHHHHHHHHHHHHcCC---------CCCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHccc-------c
Confidence            4556677777777643         24569999999999998665543 33589999999999999999863       3


Q ss_pred             eEEEEcCC
Q 016734          169 IEIRKVDN  176 (384)
Q Consensus       169 I~~~~~d~  176 (384)
                      +.++.+|.
T Consensus        94 ~~~~~~D~  101 (197)
T d1ne2a_          94 VNFMVADV  101 (197)
T ss_dssp             SEEEECCG
T ss_pred             ccEEEEeh
Confidence            56777763

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.41  E-value=4.5e-13  Score=128.99  Aligned_cols=134  Identities=16%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~  195 (384)
                      ..+|||+|||+|.+++.++... ..+|+++|+|+.+++.|++|++.|+ +.++++++++|..+                 
T Consensus       146 g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ng-l~~~~~~~~~d~~~-----------------  206 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFE-----------------  206 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHH-----------------
T ss_pred             CCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcC-CCccceeeechhhh-----------------
Confidence            4689999999999998877553 3489999999999999999999998 88899999887431                 


Q ss_pred             cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (384)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~  275 (384)
                                                         .+......+++||+|+||||++........               
T Consensus       207 -----------------------------------~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~---------------  236 (324)
T d2as0a2         207 -----------------------------------EMEKLQKKGEKFDIVVLDPPAFVQHEKDLK---------------  236 (324)
T ss_dssp             -----------------------------------HHHHHHHTTCCEEEEEECCCCSCSSGGGHH---------------
T ss_pred             -----------------------------------hhHHHHhccCCCCchhcCCccccCCHHHHH---------------
Confidence                                               111122246789999999999865322110               


Q ss_pred             cCchHHHHHHHHHHHHHhhccCeEE-EEEecCCCCHHHHHHHHHHc
Q 016734          276 SGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLRKV  320 (384)
Q Consensus       276 ~GGel~Fv~~ii~eS~~l~~~~~w~-t~~vgk~~~l~~l~~~L~~~  320 (384)
                        ....-+.+++..+..+++++|++ ++.....-+.+++.+.+.+.
T Consensus       237 --~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a  280 (324)
T d2as0a2         237 --AGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAA  280 (324)
T ss_dssp             --HHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHH
Confidence              02456788999999999999875 34555555667776665543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.40  E-value=2.1e-13  Score=117.44  Aligned_cols=60  Identities=10%  Similarity=0.014  Sum_probs=52.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +..+|||+|||||++++..+.+.. .+|+++|+|+.|++.+++|++.++ +.++++++++|.
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~-~~~~~~ii~~D~   73 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTK-AENRFTLLKMEA   73 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTT-CGGGEEEECSCH
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcc-cccchhhhcccc
Confidence            456899999999999987766544 499999999999999999999998 888999998873

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.34  E-value=4.8e-12  Score=121.24  Aligned_cols=170  Identities=12%  Similarity=0.131  Sum_probs=108.9

Q ss_pred             ccCCcEEEecCCCcc-CC-CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734           71 HDHGLNWWIPDGQLC-PT-VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (384)
Q Consensus        71 ~~fgl~~~vp~~~Li-Pr-vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid  148 (384)
                      .+.|+.|.|+....- .- .|+-..--.|+.+++...        .+..+|||++||+|.+++.++.  .+++|++||+|
T Consensus        94 ~e~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~~--------~~~~rVLdlf~~tG~~sl~aa~--~GA~V~~VD~s  163 (309)
T d2igta1          94 SLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETA--------DRPLKVLNLFGYTGVASLVAAA--AGAEVTHVDAS  163 (309)
T ss_dssp             EETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHS--------SSCCEEEEETCTTCHHHHHHHH--TTCEEEEECSC
T ss_pred             EEeEEEEEEeccCCCccccccchhHHHHHHHHHHhhc--------cCCCeEEEecCCCcHHHHHHHh--CCCeEEEEeCh
Confidence            345676666653111 11 244444456777776542        2456999999999999887764  47799999999


Q ss_pred             HHHHHHHHHHHHHCCCCCC-ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCC
Q 016734          149 DVALEWAEKNVKSNPHISE-LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYH  227 (384)
Q Consensus       149 ~~al~~A~~Ni~~n~~l~~-~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  227 (384)
                      +.|++.|++|++.|+ +.+ +++++.+|..+                                                 
T Consensus       164 ~~al~~a~~N~~ln~-~~~~~~~~i~~D~~~-------------------------------------------------  193 (309)
T d2igta1         164 KKAIGWAKENQVLAG-LEQAPIRWICEDAMK-------------------------------------------------  193 (309)
T ss_dssp             HHHHHHHHHHHHHHT-CTTSCEEEECSCHHH-------------------------------------------------
T ss_pred             HHHHHHHHHhhhhhc-ccCCcEEEEeCCHHH-------------------------------------------------
Confidence            999999999999998 654 69999887431                                                 


Q ss_pred             CCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEe--c
Q 016734          228 GPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMV--G  305 (384)
Q Consensus       228 ~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~v--g  305 (384)
                         ++........+||+|||+||.|.......          ..      .-...+..++..+..++..++++....  .
T Consensus       194 ---~l~~~~~~~~~fD~IilDPP~f~~~~~~~----------~~------~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         194 ---FIQREERRGSTYDIILTDPPKFGRGTHGE----------VW------QLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             ---HHHHHHHHTCCBSEEEECCCSEEECTTCC----------EE------EHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             ---hHHHHhhcCCCCCEEEECCCcccccccch----------hH------HHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence               12112224578999999999885422110          00      013445667778888888776543322  2


Q ss_pred             CCCCHHHHHHHHHH
Q 016734          306 RKSNLKFLISKLRK  319 (384)
Q Consensus       306 k~~~l~~l~~~L~~  319 (384)
                      -.-+...+.+++++
T Consensus       255 ~~~s~~~~~~~~~~  268 (309)
T d2igta1         255 IRASFYSMHELMRE  268 (309)
T ss_dssp             TTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            22344555555543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=9.2e-12  Score=116.42  Aligned_cols=90  Identities=9%  Similarity=0.141  Sum_probs=67.5

Q ss_pred             cCCcEEEe--cCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           72 DHGLNWWI--PDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        72 ~fgl~~~v--p~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      ..|+.+.+  ....+.|+..  .+- ..+.+++.           ...+|||+|||+|.+++.+|+. ...+|+|+|+|+
T Consensus        76 E~g~~~~~d~~~~~f~~~~~--~er-~ri~~~~~-----------~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~  140 (260)
T d2frna1          76 ENGIKYKLDVAKIMFSPANV--KER-VRMAKVAK-----------PDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDP  140 (260)
T ss_dssp             ETTEEEEEETTTSCCCGGGH--HHH-HHHHHHCC-----------TTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCH
T ss_pred             ecCeeEEeccccccEecCCH--HHH-HHHHhhcC-----------CccEEEECcceEcHHHHHHHHh-CCcEEEEecCCH
Confidence            46775544  4557888721  111 12333332           3468999999999999888765 457999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          150 VALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      .|++.|++|++.|+ ++++|+++++|..
T Consensus       141 ~a~~~~~~N~~~n~-l~~~v~~~~~D~~  167 (260)
T d2frna1         141 YTFKFLVENIHLNK-VEDRMSAYNMDNR  167 (260)
T ss_dssp             HHHHHHHHHHHHTT-CTTTEEEECSCTT
T ss_pred             HHHHHHHHHHHHhC-CCceEEEEEcchH
Confidence            99999999999998 9999999998853

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.9e-11  Score=111.55  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=64.3

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~  168 (384)
                      |-+...+..+.+.+...         ...+|||||||+|.+...++++ .+++|+|+|+|+.+++.|+++++.++ +.++
T Consensus        16 p~~~~~~~~l~~~~~l~---------pg~~VLDiGCG~G~~~~~la~~-~~~~v~GvD~s~~~~~~ar~~~~~~g-l~~~   84 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMK---------PGTRILDLGSGSGEMLCTWARD-HGITGTGIDMSSLFTAQAKRRAEELG-VSER   84 (245)
T ss_dssp             SCCHHHHHHHHHHTCCC---------TTCEEEEETCTTCHHHHHHHHH-TCCEEEEEESCHHHHHHHHHHHHHTT-CTTT
T ss_pred             CCCHHHHHHHHHHcCCC---------CCCEEEEEcCCCCHHHHHHHHh-cCCEEEEEecccchhhHHHHHHHHhh-cccc
Confidence            44566777788877542         3468999999999988887765 46899999999999999999999998 8899


Q ss_pred             eEEEEcCC
Q 016734          169 IEIRKVDN  176 (384)
Q Consensus       169 I~~~~~d~  176 (384)
                      |+++.+|.
T Consensus        85 v~~~~~d~   92 (245)
T d1nkva_          85 VHFIHNDA   92 (245)
T ss_dssp             EEEEESCC
T ss_pred             chhhhhHH
Confidence            99999874

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=9.5e-12  Score=110.14  Aligned_cols=88  Identities=15%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             cCCcEEEecCCC-ccCCCcC--HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734           72 DHGLNWWIPDGQ-LCPTVPN--RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (384)
Q Consensus        72 ~fgl~~~vp~~~-LiPrvP~--r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid  148 (384)
                      +-|..+..|++. +=|+ ++  |+....|+...+            ...++||++||||++++..+.+.. .+|++||+|
T Consensus        10 ~kg~~l~~~~~~~~RPt-~~~vre~lfn~l~~~~------------~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~   75 (183)
T d2fpoa1          10 WRGRKLPVPDSPGLRPT-TDRVRETLFNWLAPVI------------VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMD   75 (183)
T ss_dssp             GTTCEEECCCC-------CHHHHHHHHHHHHHHH------------TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSC
T ss_pred             cCCCEecCCCCCCcCcC-cHHHHHHHHhhhhccc------------chhhhhhhhccccceeeeEEecCc-ceeEEEEEe
Confidence            456778888874 4444 43  344444444333            235899999999999987766543 489999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          149 DVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      +.+++.+++|++.++ .. .+.++.+|
T Consensus        76 ~~a~~~~k~N~~~~~-~~-~~~ii~~d  100 (183)
T d2fpoa1          76 RAVSQQLIKNLATLK-AG-NARVVNSN  100 (183)
T ss_dssp             HHHHHHHHHHHHHTT-CC-SEEEECSC
T ss_pred             echhhHHHHHHhhcc-cc-ceeeeeec
Confidence            999999999999886 54 57887766

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.29  E-value=1.1e-11  Score=115.35  Aligned_cols=128  Identities=13%  Similarity=0.137  Sum_probs=102.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||||.++..||... ++.+|+++|+++++++.|++|++.++ ..++|++.++|..+               
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~-~~~nv~~~~~Di~~---------------  148 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY-DIGNVRTSRSDIAD---------------  148 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS-CCTTEEEECSCTTT---------------
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc-CCCceEEEEeeeec---------------
Confidence            34689999999999999998764 67799999999999999999999886 56789999887532               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                           .   +  .++.||.|++|.|          +|.          
T Consensus       149 -------------------------------------~---~--~~~~fD~V~ld~p----------~p~----------  166 (250)
T d1yb2a1         149 -------------------------------------F---I--SDQMYDAVIADIP----------DPW----------  166 (250)
T ss_dssp             -------------------------------------C---C--CSCCEEEEEECCS----------CGG----------
T ss_pred             -------------------------------------c---c--ccceeeeeeecCC----------chH----------
Confidence                                                 0   1  2467999999865          111          


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEee
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~  331 (384)
                                 ..++++.+.++++|.+.+.+..-.|+..+.+.|++.||.++++.|..
T Consensus       167 -----------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~~E~~  213 (250)
T d1yb2a1         167 -----------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELM  213 (250)
T ss_dssp             -----------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEE
T ss_pred             -----------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEEEEEE
Confidence                       12455667788899988877766789999999999999999999875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.27  E-value=1.1e-10  Score=105.13  Aligned_cols=60  Identities=13%  Similarity=0.114  Sum_probs=51.0

Q ss_pred             CCeEEEECCcccHHHHHHHhh--ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...|+..  .++++|+|+|+|+.|++.|+++++..+ ...++.+..+|.
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~-~~~~~~~~~~d~  101 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDI  101 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC-CSSCEEEECSCT
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc-ccchhhhccchh
Confidence            458999999999998888865  378999999999999999999998876 666777776653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=5.6e-12  Score=121.00  Aligned_cols=131  Identities=15%  Similarity=0.170  Sum_probs=92.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      +..+|||+|||+|.+++.++.  .+.+|+++|+|+.+++.|++|++.|+ +. .++++.+|..+                
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ng-l~-~~~~i~~d~~~----------------  204 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLAL--GFREVVAVDSSAEALRRAEENARLNG-LG-NVRVLEANAFD----------------  204 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTT-CT-TEEEEESCHHH----------------
T ss_pred             CCCeeeccCCCCcHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcC-CC-CcceeeccHHH----------------
Confidence            356999999999999887764  35689999999999999999999998 75 58898887421                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          ++.......++||+|+||||++.......               
T Consensus       205 ------------------------------------~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~---------------  233 (318)
T d1wxxa2         205 ------------------------------------LLRRLEKEGERFDLVVLDPPAFAKGKKDV---------------  233 (318)
T ss_dssp             ------------------------------------HHHHHHHTTCCEEEEEECCCCSCCSTTSH---------------
T ss_pred             ------------------------------------HhhhhHhhhcCCCEEEEcCCccccchHHH---------------
Confidence                                                11112224678999999999986432100               


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEE-EEecCCCCHHHHHHHHH
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLR  318 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t-~~vgk~~~l~~l~~~L~  318 (384)
                        ......+.+++..+..+++++|++. +-....-+.+.+.+.+.
T Consensus       234 --~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~  276 (318)
T d1wxxa2         234 --ERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVA  276 (318)
T ss_dssp             --HHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHH
Confidence              0024457788999999999998753 33333334455554443

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.26  E-value=8.7e-11  Score=109.37  Aligned_cols=61  Identities=18%  Similarity=0.213  Sum_probs=54.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.++..|+.+ ++++|+|+|+++.+++.|++++...+ +.++|+++.+|..
T Consensus        67 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~i~~a~~~~~~~g-l~~~v~~~~~d~~  127 (282)
T d2o57a1          67 RQAKGLDLGAGYGGAARFLVRK-FGVSIDCLNIAPVQNKRNEEYNNQAG-LADNITVKYGSFL  127 (282)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHHT-CTTTEEEEECCTT
T ss_pred             CCCEEEEeCCCCcHHHhhhhcc-CCcEEEEEeccchhhhhhhccccccc-ccccccccccccc
Confidence            4569999999999999888865 47899999999999999999999988 8889999998853

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.26  E-value=1.4e-11  Score=118.31  Aligned_cols=133  Identities=9%  Similarity=0.072  Sum_probs=93.6

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCC-CceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~-~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+|||++||+|.+++.++.. ....|++||+|+.+++.|++|++.|+ +. ++++++.+|..+                
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~-l~~~~~~~i~~d~~~----------------  206 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANH-LDMANHQLVVMDVFD----------------  206 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTT-CCCTTEEEEESCHHH----------------
T ss_pred             CCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhc-ccCcceEEEEccHHH----------------
Confidence            468999999999998765532 22379999999999999999999998 64 679999987431                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          ++.......++||+|+++||.+......      ...       
T Consensus       207 ------------------------------------~l~~~~~~~~~fD~Ii~DPP~f~~~~~~------~~~-------  237 (317)
T d2b78a2         207 ------------------------------------YFKYARRHHLTYDIIIIDPPSFARNKKE------VFS-------  237 (317)
T ss_dssp             ------------------------------------HHHHHHHTTCCEEEEEECCCCC-----C------CCC-------
T ss_pred             ------------------------------------HHHHHHhhcCCCCEEEEcChhhccchhH------HHH-------
Confidence                                                2222223467899999999987643211      000       


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEE-EEecCCCCHHHHHHHHHH
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRK  319 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t-~~vgk~~~l~~l~~~L~~  319 (384)
                          ...-+.+|++.+..+++++|++. +.....-+.+.+.+.+.+
T Consensus       238 ----~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~  279 (317)
T d2b78a2         238 ----VSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEK  279 (317)
T ss_dssp             ----HHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHH
Confidence                23447789999999999988764 455444567776666544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.23  E-value=8.8e-12  Score=110.49  Aligned_cols=90  Identities=19%  Similarity=0.144  Sum_probs=65.6

Q ss_pred             CcEEEecCC-CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734           74 GLNWWIPDG-QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (384)
Q Consensus        74 gl~~~vp~~-~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al  152 (384)
                      |..+..|++ .+=|+ ++  -.=+.+.+.|...        .+..+|||++||||++++..+.+.. .+|++||.|+.++
T Consensus        10 g~~l~~~~~~~~RPt-~~--~vrealFn~l~~~--------~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~   77 (182)
T d2fhpa1          10 GRRLKALDGDNTRPT-TD--KVKESIFNMIGPY--------FDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAAL   77 (182)
T ss_dssp             TCBCCCCCCCSSCCC-CH--HHHHHHHHHHCSC--------CSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHH
T ss_pred             CCEecCCCCCCcCcC-cH--HHHHHHHHHHHHh--------cCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHH
Confidence            455555554 34444 33  3334455555431        2456899999999999987776543 3899999999999


Q ss_pred             HHHHHHHHHCCCCCCceEEEEcCC
Q 016734          153 EWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       153 ~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.+++|++.++ ..+++.++++|.
T Consensus        78 ~~~~~N~~~~~-~~~~~~i~~~D~  100 (182)
T d2fhpa1          78 KVIKENIAITK-EPEKFEVRKMDA  100 (182)
T ss_dssp             HHHHHHHHHHT-CGGGEEEEESCH
T ss_pred             HHHHHHhhhhh-cccccccccccc
Confidence            99999999997 788899998874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=5.7e-11  Score=113.20  Aligned_cols=167  Identities=14%  Similarity=0.109  Sum_probs=103.1

Q ss_pred             CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-----cCCEEEEEeCcHHHHHHHHH
Q 016734           83 QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-----LGWSFVGSDMTDVALEWAEK  157 (384)
Q Consensus        83 ~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-----~~~~v~gvDid~~al~~A~~  157 (384)
                      ++.|+ +-....+..+..++..         ....+|||.|||+|++...+..+.     ...+++|+|+|+.+++.|+.
T Consensus        95 ~~TP~-~i~~~m~~l~~~~~~~---------~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~  164 (328)
T d2f8la1          95 QMTPD-SIGFIVAYLLEKVIQK---------KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALV  164 (328)
T ss_dssp             CCCCH-HHHHHHHHHHHHHHTT---------CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHH
T ss_pred             EECcH-HHHHHHHHHHHHHhCC---------CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHH
Confidence            45687 6555555555555542         245689999999999987776543     34589999999999999999


Q ss_pred             HHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCccccccc
Q 016734          158 NVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVR  237 (384)
Q Consensus       158 Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~  237 (384)
                      |+..++ .  .+.+.++|...                                                       .  .
T Consensus       165 ~~~~~~-~--~~~~~~~d~~~-------------------------------------------------------~--~  184 (328)
T d2f8la1         165 GADLQR-Q--KMTLLHQDGLA-------------------------------------------------------N--L  184 (328)
T ss_dssp             HHHHHT-C--CCEEEESCTTS-------------------------------------------------------C--C
T ss_pred             HHHHhh-h--hhhhhcccccc-------------------------------------------------------c--c
Confidence            998775 2  35566665321                                                       0  0


Q ss_pred             CCCcEEEEEECCCcccchhhhc-cC-CccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEec----CCCCHH
Q 016734          238 DGEQFDFCICNPPFFESMEEAG-LN-PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG----RKSNLK  311 (384)
Q Consensus       238 ~~~~fD~i~cNPPy~~s~~~~~-~~-p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg----k~~~l~  311 (384)
                      ...+||+|||||||........ .. ......+      .......|+.    .+..+++.+|+....+.    .....+
T Consensus       185 ~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~------~~~~~~~Fi~----~~~~~Lk~~G~~~~I~p~~~l~~~~~~  254 (328)
T d2f8la1         185 LVDPVDVVISDLPVGYYPDDENAKTFELCREEG------HSFAHFLFIE----QGMRYTKPGGYLFFLVPDAMFGTSDFA  254 (328)
T ss_dssp             CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSS------CEEHHHHHHH----HHHHTEEEEEEEEEEEEGGGGGSTTHH
T ss_pred             ccccccccccCCCCCCCccchhhhhcchhcccC------cchHHHHHHH----HHHHhcCCCCceEEEecCccccCchhH
Confidence            2468999999999954322111 00 0001011      0112344554    45567778887766554    234567


Q ss_pred             HHHHHHHHcCCeEEEEEEe
Q 016734          312 FLISKLRKVGVTIVKTTEF  330 (384)
Q Consensus       312 ~l~~~L~~~g~~~v~~~e~  330 (384)
                      .+.+.|.+.+ ....++.+
T Consensus       255 ~lR~~L~~~~-~i~~ii~l  272 (328)
T d2f8la1         255 KVDKFIKKNG-HIEGIIKL  272 (328)
T ss_dssp             HHHHHHHHHE-EEEEEEEC
T ss_pred             HHHHHHHhCC-cEEEEEEC
Confidence            7888777664 23345554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=1.7e-10  Score=108.01  Aligned_cols=128  Identities=16%  Similarity=0.222  Sum_probs=100.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|||+|.++..||... ++.+|+++|+++++++.|++|+++.+ +.+++.+...|...               
T Consensus       103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g-~~~~v~~~~~d~~~---------------  166 (266)
T d1o54a_         103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISE---------------  166 (266)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGG---------------
T ss_pred             CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc-cccCcEEEeccccc---------------
Confidence            45699999999999999998765 67899999999999999999999998 77888877665311               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                              .+  ....||.|+..-|          +|.          
T Consensus       167 ----------------------------------------~~--~~~~~D~V~~d~p----------~p~----------  184 (266)
T d1o54a_         167 ----------------------------------------GF--DEKDVDALFLDVP----------DPW----------  184 (266)
T ss_dssp             ----------------------------------------CC--SCCSEEEEEECCS----------CGG----------
T ss_pred             ----------------------------------------cc--cccceeeeEecCC----------CHH----------
Confidence                                                    11  2456898876543          121          


Q ss_pred             cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEee
Q 016734          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (384)
Q Consensus       274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~  331 (384)
                                 ..+++....++.+|.+.+.+.-..|+..+.+.|++.||.++++.|..
T Consensus       185 -----------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~E~l  231 (266)
T d1o54a_         185 -----------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESL  231 (266)
T ss_dssp             -----------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCC
T ss_pred             -----------HHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEEEEE
Confidence                       12455666788888887777767889999999999999999998865

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.19  E-value=6e-10  Score=99.42  Aligned_cols=58  Identities=19%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|..+..++..  +.+++|+|+|+.+++.|+++++.++ . +++.++++|.
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~-~-~~i~~~~~d~   72 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNG-H-QQVEYVQGDA   72 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCC
T ss_pred             CcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccc-c-cccccccccc
Confidence            3468999999999998887755  4689999999999999999999886 4 4699998874

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.17  E-value=5e-10  Score=101.03  Aligned_cols=58  Identities=19%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...|+.+  +.+|+|+|+|+.+++.|++++..++ + +++.++++|.
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~-~-~~~~~~~~d~   73 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKG-V-ENVRFQQGTA   73 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHT-C-CSEEEEECBT
T ss_pred             CCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccc-c-cccccccccc
Confidence            3468999999999999888765  4689999999999999999999887 5 3599998874

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.10  E-value=4.6e-10  Score=104.95  Aligned_cols=74  Identities=20%  Similarity=0.215  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~  170 (384)
                      .+|+.++.+.+...        .++.+|||||||+|.++..|+...+ +.+|+|+|+|+.+++.|++++...+ +  +++
T Consensus        12 ~d~l~~l~~~~~~~--------~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~-~--~~~   80 (281)
T d2gh1a1          12 DDYVSFLVNTVWKI--------TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-Y--DSE   80 (281)
T ss_dssp             HHHHHHHHHTTSCC--------CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS-S--EEE
T ss_pred             HHHHHHHHHHHhcc--------CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc-c--ccc
Confidence            45677776654321        3567999999999999988887766 5899999999999999999998776 3  588


Q ss_pred             EEEcCC
Q 016734          171 IRKVDN  176 (384)
Q Consensus       171 ~~~~d~  176 (384)
                      ++.+|.
T Consensus        81 f~~~d~   86 (281)
T d2gh1a1          81 FLEGDA   86 (281)
T ss_dssp             EEESCT
T ss_pred             cccccc
Confidence            888774

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.08  E-value=7.5e-10  Score=97.60  Aligned_cols=57  Identities=18%  Similarity=0.225  Sum_probs=49.2

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +.+|||||||+|.....|+++  +++|+|+|+|+.+++.|+++++..+ +. .+.+...|.
T Consensus        31 ~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~-~~-~~~~~~~d~   87 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEG-LD-NLQTDLVDL   87 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-CT-TEEEEECCT
T ss_pred             CCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhcc-cc-chhhhheec
Confidence            458999999999998888865  6899999999999999999999887 54 588877764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.08  E-value=4.2e-10  Score=102.16  Aligned_cols=71  Identities=15%  Similarity=0.045  Sum_probs=54.7

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEE
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK  173 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~  173 (384)
                      .+..+.+++....       ..+.+|||||||+|.++..|+.+  +.+++|+|+|+.|++.|++++..++ +  +++++.
T Consensus        23 ~~~~~~~~~~~~~-------~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~-~--~v~~~~   90 (246)
T d1y8ca_          23 WSDFIIEKCVENN-------LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQG-L--KPRLAC   90 (246)
T ss_dssp             HHHHHHHHHHTTT-------CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTT-C--CCEEEC
T ss_pred             HHHHHHHHHHHhC-------CCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccC-c--cceeec
Confidence            3445555554321       23468999999999998888765  5689999999999999999998876 4  588888


Q ss_pred             cCC
Q 016734          174 VDN  176 (384)
Q Consensus       174 ~d~  176 (384)
                      +|.
T Consensus        91 ~d~   93 (246)
T d1y8ca_          91 QDI   93 (246)
T ss_dssp             CCG
T ss_pred             cch
Confidence            774

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1e-09  Score=98.46  Aligned_cols=59  Identities=17%  Similarity=0.043  Sum_probs=47.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...|+.+.+ .+|+|+|+|+.+++.|++++...+ . ..++++++|.
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~-~-~~~~f~~~d~  118 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEG-K-RVRNYFCCGL  118 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGG-G-GEEEEEECCG
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccc-c-cccccccccc
Confidence            456899999999988776665543 589999999999999999988765 3 3578888874

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.05  E-value=2.6e-09  Score=98.04  Aligned_cols=60  Identities=15%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.+...+++++|+.+++++|+ +.+++.|++++...+ +.++|+++.+|.
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~rv~~~~~D~  139 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG-LSDRVDVVEGDF  139 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh-cccchhhccccc
Confidence            346899999999999999999999999999998 678999999999997 888999999874

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=5.8e-10  Score=100.81  Aligned_cols=74  Identities=20%  Similarity=0.339  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      ...+.++.+++....      .....+|||||||+|.++..|++.  +++|+|||+|+.|++.|++++..++ +  ++.+
T Consensus        24 ~~~~~~~~~~~~~~~------~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~-~--~i~~   92 (251)
T d1wzna1          24 KAEIDFVEEIFKEDA------KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERN-L--KIEF   92 (251)
T ss_dssp             HHHHHHHHHHHHHTC------SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-C--CCEE
T ss_pred             HHHHHHHHHHHHHhc------CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeecccccccccccccccc-c--cchh
Confidence            334556666665432      124568999999999998888764  5799999999999999999998876 4  5899


Q ss_pred             EEcCC
Q 016734          172 RKVDN  176 (384)
Q Consensus       172 ~~~d~  176 (384)
                      +++|.
T Consensus        93 ~~~d~   97 (251)
T d1wzna1          93 LQGDV   97 (251)
T ss_dssp             EESCG
T ss_pred             eehhh
Confidence            88874

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=2.4e-09  Score=94.45  Aligned_cols=56  Identities=25%  Similarity=0.305  Sum_probs=47.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...++.  .+++|+|+|+|+.+++.|++++...+ .  .+.++.+|.
T Consensus        38 ~~~ILDiGcG~G~~~~~la~--~~~~v~giD~S~~~i~~ak~~~~~~~-~--~~~~~~~d~   93 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFLLED--YGFEVVGVDISEDMIRKAREYAKSRE-S--NVEFIVGDA   93 (226)
T ss_dssp             CCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT-C--CCEEEECCT
T ss_pred             CCEEEEECCCcchhhhhHhh--hhcccccccccccchhhhhhhhcccc-c--ccccccccc
Confidence            46899999999999888875  47899999999999999999988765 2  467777664

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.00  E-value=4.5e-09  Score=96.03  Aligned_cols=58  Identities=9%  Similarity=-0.129  Sum_probs=49.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.....|+...++..|+|+|+|+.+++.|+++++..+    .+..+..+.
T Consensus        74 pG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~----ni~~i~~d~  131 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE----NIIPILGDA  131 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT----TEEEEECCT
T ss_pred             CCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc----ccceEEEee
Confidence            4568999999999999999988788899999999999999999887664    466677664

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.99  E-value=1.2e-09  Score=96.26  Aligned_cols=88  Identities=13%  Similarity=0.123  Sum_probs=59.5

Q ss_pred             CCcEEEecCC-CccCCCcC--HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734           73 HGLNWWIPDG-QLCPTVPN--RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (384)
Q Consensus        73 fgl~~~vp~~-~LiPrvP~--r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~  149 (384)
                      -|..+..|.+ .+=|+ ++  ||....|+..-+            ...++||+.||||++++..+.+.. .+|+.||.|.
T Consensus        11 kg~~l~~~~~~~~RPt-~~~vrealFn~l~~~~------------~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~   76 (183)
T d2ifta1          11 RGRKLPVLNSEGLRPT-GDRVKETLFNWLMPYI------------HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDK   76 (183)
T ss_dssp             TTCEEECC----------CHHHHHHHHHHHHHH------------TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCH
T ss_pred             CCCEecCCCCCCcCcC-cHHHHHHHHHHhhhhc------------ccceEeecccCccceeeeeeeecc-eeeEEeeccc
Confidence            4678888877 45566 66  355555554333            234899999999999988876543 3899999999


Q ss_pred             HHHHHHHHHHHHCCCCCC-ceEEEEcC
Q 016734          150 VALEWAEKNVKSNPHISE-LIEIRKVD  175 (384)
Q Consensus       150 ~al~~A~~Ni~~n~~l~~-~I~~~~~d  175 (384)
                      .+++..++|++..+ +++ ...++..|
T Consensus        77 ~a~~~ik~Ni~~l~-~~~~~~~~~~~d  102 (183)
T d2ifta1          77 TVANQLKKNLQTLK-CSSEQAEVINQS  102 (183)
T ss_dssp             HHHHHHHHHHHHTT-CCTTTEEEECSC
T ss_pred             chhhhHhhHHhhhc-cccccccccccc
Confidence            99999999999887 544 45555443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.6e-09  Score=104.00  Aligned_cols=93  Identities=13%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             cCCcEEEecCCCccCCCcC-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           72 DHGLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~-r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      .-|+.|.++++.+.-..+. .+.++.++.+++..         ....+|||+.||+|.+++.||..  ..+|+|+|+++.
T Consensus       177 ~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~---------~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~  245 (358)
T d1uwva2         177 SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV---------QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPA  245 (358)
T ss_dssp             ETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTC---------CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHH
T ss_pred             cCCEEEEECCchhhccchhhhhHHHHHHHHhhcc---------CCCceEEEecccccccchhcccc--ccEEEeccCcHH
Confidence            4577899998888765433 56777888888753         23458999999999999999864  469999999999


Q ss_pred             HHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          151 ALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       151 al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      |++.|++|++.|+ +. ++.++.++..
T Consensus       246 ai~~A~~na~~n~-i~-n~~~~~~~~~  270 (358)
T d1uwva2         246 LVEKGQQNARLNG-LQ-NVTFYHENLE  270 (358)
T ss_dssp             HHHHHHHHHHHTT-CC-SEEEEECCTT
T ss_pred             HHHHHHHhHHhcc-cc-cceeeecchh
Confidence            9999999999998 65 6888888753

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=1.1e-08  Score=96.61  Aligned_cols=59  Identities=14%  Similarity=0.110  Sum_probs=52.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ...+|||||||.|.++..+|.+. +++|+|+++|++.++.|++.++..+ +.+++.+...|
T Consensus        61 ~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~-l~~~v~~~~~d  119 (291)
T d1kpia_          61 PGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQG  119 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSC-CSSCEEEEECC
T ss_pred             CCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhc-cchhhhhhhhc
Confidence            45699999999999988888765 6799999999999999999999998 88899887765

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.9e-09  Score=100.01  Aligned_cols=133  Identities=14%  Similarity=0.112  Sum_probs=95.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCC---------CCCCceEEEEcCCCCCCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNP---------HISELIEIRKVDNSESTPSIQ  184 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~---------~l~~~I~~~~~d~~~~~p~~~  184 (384)
                      ...+|||+|||+|++...||... ++.+|+++|+++++++.|++|++..+         ...+++.+.++|+.+.     
T Consensus        98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~-----  172 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA-----  172 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC-----
T ss_pred             CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc-----
Confidence            35699999999999999998764 67799999999999999999998531         1446788888875420     


Q ss_pred             ccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCcc
Q 016734          185 ESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKT  264 (384)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~  264 (384)
                                                                     ..++  .+..||.|+..=|          +|..
T Consensus       173 -----------------------------------------------~~~~--~~~~fD~V~LD~p----------~P~~  193 (324)
T d2b25a1         173 -----------------------------------------------TEDI--KSLTFDAVALDML----------NPHV  193 (324)
T ss_dssp             -----------------------------------------------C---------EEEEEECSS----------STTT
T ss_pred             -----------------------------------------------cccc--CCCCcceEeecCc----------CHHH
Confidence                                                           0111  2467999987422          1211


Q ss_pred             ccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHc--CCeEEEEEEeeC
Q 016734          265 SCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV--GVTIVKTTEFVQ  332 (384)
Q Consensus       265 ~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~--g~~~v~~~e~~q  332 (384)
                                           .+.+....++.+|++.+.+.--.|+..+++.|++.  +|.++++.|..+
T Consensus       194 ---------------------~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~~E~~~  242 (324)
T d2b25a1         194 ---------------------TLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIV  242 (324)
T ss_dssp             ---------------------THHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCCC
T ss_pred             ---------------------HHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeEEEEEEe
Confidence                                 13455667888999888888778888899999854  688889888763

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.97  E-value=1e-08  Score=94.38  Aligned_cols=57  Identities=18%  Similarity=0.128  Sum_probs=46.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||+|||+|-+...|+..... +|+|+|+++.+++.|+++....+    .++++.++.
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~d~  149 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMP----VGKFILASM  149 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSS----EEEEEESCG
T ss_pred             CCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccc----cceeEEccc
Confidence            4569999999999998877766544 89999999999999998875433    478887763

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=3.4e-09  Score=98.98  Aligned_cols=130  Identities=14%  Similarity=0.103  Sum_probs=98.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHC-CCCCCceEEEEcCCCCCCCcccccccCCcc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDNSESTPSIQESLTGKSV  192 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n-~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~  192 (384)
                      ...+|||+|||||.++..||... |+-+|+++|+++++++.|++|++.. +...+++.++.+|..+              
T Consensus        96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~--------------  161 (264)
T d1i9ga_          96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD--------------  161 (264)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG--------------
T ss_pred             CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc--------------
Confidence            45699999999999999998874 6779999999999999999999864 1145678888776421              


Q ss_pred             ccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccc
Q 016734          193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE  272 (384)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E  272 (384)
                                                              ..+  +++.||.|+++=|          +|..        
T Consensus       162 ----------------------------------------~~~--~~~~fDaV~ldlp----------~P~~--------  181 (264)
T d1i9ga_         162 ----------------------------------------SEL--PDGSVDRAVLDML----------APWE--------  181 (264)
T ss_dssp             ----------------------------------------CCC--CTTCEEEEEEESS----------CGGG--------
T ss_pred             ----------------------------------------ccc--cCCCcceEEEecC----------CHHH--------
Confidence                                                    001  3578999987421          2211        


Q ss_pred             ccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHH-HcCCeEEEEEEee
Q 016734          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLR-KVGVTIVKTTEFV  331 (384)
Q Consensus       273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~-~~g~~~v~~~e~~  331 (384)
                                   .+++..+.++.+|++.+.+.-..|+..+.+.|+ +.+|.++++.|..
T Consensus       182 -------------~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~~E~l  228 (264)
T d1i9ga_         182 -------------VLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETL  228 (264)
T ss_dssp             -------------GHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECCC
T ss_pred             -------------HHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecceEEEEE
Confidence                         134455677889998888887889999999997 4578889999876

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=3.2e-09  Score=99.12  Aligned_cols=62  Identities=23%  Similarity=0.352  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus        91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      +..|..|+.+++...         ...+|||||||+|.++..|+.+  +++|+|+|+|+.||+.|+++....+
T Consensus        41 ~~~~~~~l~~~l~~~---------~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~  102 (292)
T d1xvaa_          41 TAEYKAWLLGLLRQH---------GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRR  102 (292)
T ss_dssp             CHHHHHHHHHHHHHT---------TCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhc---------CCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcc
Confidence            366788999888652         2458999999999999998865  6899999999999999999998775

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.94  E-value=8.9e-09  Score=93.99  Aligned_cols=61  Identities=15%  Similarity=0.084  Sum_probs=50.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.....++.. ...+|+|+|+|+.+++.|++.....+ ...++.++++|..
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~-~~~~v~f~~~D~~   84 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSY   84 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTT
T ss_pred             CcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcC-CCcceEEEEcchh
Confidence            4568999999999877667654 33589999999999999999988776 6667999988753

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.94  E-value=1.9e-08  Score=92.73  Aligned_cols=59  Identities=10%  Similarity=0.099  Sum_probs=54.0

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ..+|||||||+|.+...|++++|+.+++++|+ +++++.|+++++..+ +.+++.++.+|.
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~-~~~ri~~~~~d~  140 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG-LADRVTVAEGDF  140 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC-Ccceeeeeeeec
Confidence            45899999999999999999999999999998 789999999999998 889999988764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=9e-09  Score=97.14  Aligned_cols=60  Identities=15%  Similarity=0.193  Sum_probs=48.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      +..+|||||||+|.+++.+|+... .+|+|+|.++.+. .|++++..++ +.++|.+++++..
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~-~a~~~~~~~~-~~~~i~~~~~~~~   94 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILY-QAMDIIRLNK-LEDTITLIKGKIE   94 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHH-HHHHHHHHTT-CTTTEEEEESCTT
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHH-HHHHHHHHhC-CCccceEEEeeHH
Confidence            356899999999999877775432 4899999999876 5677777887 7889999998753

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.88  E-value=9.4e-09  Score=92.26  Aligned_cols=53  Identities=11%  Similarity=0.033  Sum_probs=43.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ++.+|||||||+|.++..++.+  +++|+|+|+|+++++.|+++..      +.+.+++++
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~------~~~~~~~~~   72 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK------DGITYIHSR   72 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC------SCEEEEESC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc------ccccccccc
Confidence            3568999999999998877654  5789999999999999987642      348888776

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.88  E-value=2.1e-08  Score=90.16  Aligned_cols=58  Identities=10%  Similarity=-0.004  Sum_probs=50.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.....|+...++.+|+|+|+++.+++.|+++++..+    ++.++.++.
T Consensus        56 pg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~----ni~~i~~d~  113 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFDA  113 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSCT
T ss_pred             CCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC----CceEEEeec
Confidence            3468999999999999889888887799999999999999999998765    478887764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.87  E-value=1.5e-08  Score=90.82  Aligned_cols=58  Identities=14%  Similarity=0.239  Sum_probs=53.6

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      -.|||||||+|.....||+..|++.++|+|+++.++..|.++++.++ +. +|.++.+|.
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~-l~-Nv~~~~~Da   88 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-AQ-NVKLLNIDA   88 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-CS-SEEEECCCG
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh-cc-Cchhcccch
Confidence            47999999999999999999999999999999999999999999998 65 699998874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=7.4e-09  Score=98.20  Aligned_cols=59  Identities=19%  Similarity=0.310  Sum_probs=48.6

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.+++.+|+. ...+|+|+|.++. ...|+++++.|+ +.++|.+++++..
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~-~~~a~~~~~~n~-~~~~v~~~~~~~~   92 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSI-SDYAVKIVKANK-LDHVVTIIKGKVE   92 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTT-HHHHHHHHHHTT-CTTTEEEEESCTT
T ss_pred             cCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHH-HhhhhhHHHHhC-CccccceEeccHH
Confidence            458999999999988776654 2348999999975 578889999998 8999999998753

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=2.8e-08  Score=93.04  Aligned_cols=59  Identities=12%  Similarity=0.072  Sum_probs=50.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ...+|||||||.|.++..++.+ .+.+|+|+|+|+..++.|++.++..+ +..++.+...|
T Consensus        52 ~g~~VLDiGCG~G~~a~~~a~~-~g~~v~gi~ls~~q~~~a~~~~~~~~-l~~~~~~~~~d  110 (280)
T d2fk8a1          52 PGMTLLDIGCGWGTTMRRAVER-FDVNVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQG  110 (280)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESC
T ss_pred             CCCEEEEecCCchHHHHHHHHh-CceeEEEecchHHHHHHHHHHHHhhc-cccchhhhhhh
Confidence            3569999999999988776654 47899999999999999999999998 88888887665

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.6e-08  Score=96.25  Aligned_cols=59  Identities=20%  Similarity=0.249  Sum_probs=49.1

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.++..+|+. ...+|+|+|.++ ++..|+++++.|+ +.++|.+++++..
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~-~~~~i~~i~~~~~   97 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNG-FSDKITLLRGKLE   97 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTT-CTTTEEEEESCTT
T ss_pred             cCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhC-ccccceEEEeehh
Confidence            458999999999988766643 334899999997 6689999999998 8889999998753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=3.8e-08  Score=92.54  Aligned_cols=60  Identities=10%  Similarity=0.030  Sum_probs=53.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||.|..++.+|++. +++|+|+++|++-++.|++.++..+ +.+++++..+|.
T Consensus        62 ~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g-~~~~v~~~~~d~  121 (285)
T d1kpga_          62 PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAGW  121 (285)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESCG
T ss_pred             CCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhh-hhhhhHHHHhhh
Confidence            45689999999999988888765 7999999999999999999999988 888999988873

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.79  E-value=2.2e-08  Score=90.06  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=51.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||||||+|.++..|+... +..+|+++|+++++++.|++|++..+ +. ++.++.+|.
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-~~-n~~~~~~d~  135 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-IE-NVIFVCGDG  135 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEESCG
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-cc-ccccccCch
Confidence            45699999999999999898765 56799999999999999999999886 54 577777763

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=2.3e-08  Score=92.56  Aligned_cols=55  Identities=22%  Similarity=0.292  Sum_probs=47.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      +..+|||||||+|.+...|+...++++++|+|+|+.+++.|+++.   .    ++.++.+|.
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---~----~~~~~~~d~  138 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---P----QVTFCVASS  138 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---T----TSEEEECCT
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---c----cccceeeeh
Confidence            467999999999999999998889999999999999999998652   2    478888774

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.77  E-value=8.1e-08  Score=87.46  Aligned_cols=58  Identities=10%  Similarity=-0.026  Sum_probs=48.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ...+|||+|||+|.....|+... ++.+|+|+|+++.+++.|+++++..+    .+..+..|.
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~----~~~~i~~d~  131 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR----NIVPILGDA  131 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT----TEEEEECCT
T ss_pred             CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC----CceEEEEEC
Confidence            45699999999999999998865 67899999999999999999987664    366666663

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.77  E-value=1.8e-08  Score=86.29  Aligned_cols=46  Identities=15%  Similarity=0.185  Sum_probs=40.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      .+.+|||+|||+|-.+..||.+  +++|+|+|+|+.+++.|++.+...
T Consensus        20 ~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~   65 (201)
T d1pjza_          20 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQ   65 (201)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSC
T ss_pred             CCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccc
Confidence            4569999999999999888865  899999999999999999998654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2e-08  Score=90.69  Aligned_cols=70  Identities=11%  Similarity=-0.005  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      ..|.+.+.+.+..          ...+|||||||+|..+..++... ..+++|+|+|+.+++.|+++.+..+   ..+.+
T Consensus        40 ~~~~~~la~~~~~----------~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~---~~~~~  105 (229)
T d1zx0a1          40 TPYMHALAAAASS----------KGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQT---HKVIP  105 (229)
T ss_dssp             HHHHHHHHHHHTT----------TCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCS---SEEEE
T ss_pred             HHHHHHHHHhhcc----------CCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhcc---ccccc
Confidence            3566667766642          35689999999999888887643 4589999999999999999987764   34666


Q ss_pred             EEcC
Q 016734          172 RKVD  175 (384)
Q Consensus       172 ~~~d  175 (384)
                      +..+
T Consensus       106 ~~~~  109 (229)
T d1zx0a1         106 LKGL  109 (229)
T ss_dssp             EESC
T ss_pred             cccc
Confidence            6654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=3.5e-08  Score=87.82  Aligned_cols=42  Identities=24%  Similarity=0.316  Sum_probs=37.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N  158 (384)
                      .+.+|||||||+|..+..|+..  +++|+|+|+|+.+++.|+++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~   83 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREK   83 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccc
Confidence            3458999999999999888754  78999999999999999986

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.72  E-value=7.8e-08  Score=94.68  Aligned_cols=61  Identities=15%  Similarity=-0.019  Sum_probs=44.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc-------------CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL-------------GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~-------------~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d  175 (384)
                      ...+|+|.+||+|.+.+.+.....             ...+.|+|+++.+...|+.|+..++.-...+.+..+|
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d  235 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCED  235 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECC
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCc
Confidence            356899999999998776655432             2358999999999999999998887222334455544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=8.3e-08  Score=84.16  Aligned_cols=45  Identities=22%  Similarity=0.224  Sum_probs=35.6

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .+|||||||+|.+...++      +++|+|+|+.+++.|+++         .+.++++|.
T Consensus        38 ~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~---------~~~~~~~d~   82 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR---------GVFVLKGTA   82 (208)
T ss_dssp             SCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT---------TCEEEECBT
T ss_pred             CeEEEECCCCcccccccc------eEEEEeCChhhccccccc---------ccccccccc
Confidence            479999999998765542      468999999999999863         267777764

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=8.3e-08  Score=86.49  Aligned_cols=68  Identities=24%  Similarity=0.188  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      ..+++|+...+.....+   ...+..+|||||||+|..++.++.. ...+|+|+|+|+.+++.|+++++..+
T Consensus        31 ~~~~~~~~~~~~~~~~~---~~~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          31 AEMLKFNLECLHKTFGP---GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             HHHHHHHHHHHHHHHST---TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHhcc---cCCCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            34566665544321000   1124568999999999876666543 23489999999999999999998764

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.69  E-value=3.6e-08  Score=88.32  Aligned_cols=59  Identities=19%  Similarity=0.278  Sum_probs=53.8

Q ss_pred             CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+||||||+|.....+|+..|+..++|+|+++.++..|.+.+..++ ++ +|.++.+|..
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~-l~-Ni~~~~~da~   91 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG-VP-NIKLLWVDGS   91 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-CS-SEEEEECCSS
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc-cc-cceeeecCHH
Confidence            47999999999999999999999999999999999999999999887 65 5999998853

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.5e-08  Score=88.16  Aligned_cols=92  Identities=14%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             CCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHH
Q 016734           73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVA  151 (384)
Q Consensus        73 fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~a  151 (384)
                      .+..+.+..+..+.. |-.   +-.+.++|....       ....+|||||||+|.....||... +..+|+++|+++++
T Consensus        45 ~D~~l~i~~~~~is~-P~~---~a~~le~L~~~l-------~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l  113 (224)
T d1i1na_          45 MDSPQSIGFQATISA-PHM---HAYALELLFDQL-------HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKEL  113 (224)
T ss_dssp             SSSCEEEETTEEECC-HHH---HHHHHHHTTTTS-------CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHH
T ss_pred             CCCCccccchhhhhh-hHH---HHHHHHHHhhcc-------CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHH
Confidence            344567777777776 633   223445553211       234689999999999888888754 56799999999999


Q ss_pred             HHHHHHHHHHCCCCC----CceEEEEcCC
Q 016734          152 LEWAEKNVKSNPHIS----ELIEIRKVDN  176 (384)
Q Consensus       152 l~~A~~Ni~~n~~l~----~~I~~~~~d~  176 (384)
                      ++.|++|+++.+ +.    +++.++.+|.
T Consensus       114 ~~~a~~~l~~~~-~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_         114 VDDSVNNVRKDD-PTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHHHHHHC-THHHHTSSEEEEESCG
T ss_pred             HHHHHHhccccC-cccccccceEEEEeec
Confidence            999999998765 32    4677877763

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.61  E-value=1.3e-07  Score=85.48  Aligned_cols=87  Identities=15%  Similarity=0.205  Sum_probs=68.1

Q ss_pred             CcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHH
Q 016734           74 GLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE  153 (384)
Q Consensus        74 gl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~  153 (384)
                      +..+.++.++.+.. |-...   .+.++|..         ....+|||||||||..+.+|+.. .+.+|+++|+++..++
T Consensus        50 D~~l~i~~g~~is~-P~~~a---~ml~~L~l---------~~g~~VLeIGsGsGY~taila~l-~g~~V~~ie~~~~l~~  115 (215)
T d1jg1a_          50 DEPLPIPAGQTVSA-PHMVA---IMLEIANL---------KPGMNILEVGTGSGWNAALISEI-VKTDVYTIERIPELVE  115 (215)
T ss_dssp             SSCEECSTTCEECC-HHHHH---HHHHHHTC---------CTTCCEEEECCTTSHHHHHHHHH-HCSCEEEEESCHHHHH
T ss_pred             cCCcccchhhhhhh-hhhHH---HHHHhhcc---------CccceEEEecCCCChhHHHHHHh-hCceeEEEeccHHHHH
Confidence            55688899999988 75433   34445543         23458999999999999888754 4567999999999999


Q ss_pred             HHHHHHHHCCCCCCceEEEEcCC
Q 016734          154 WAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       154 ~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      .|++|++..+ + +++.++++|.
T Consensus       116 ~a~~~l~~~g-~-~nv~~~~gd~  136 (215)
T d1jg1a_         116 FAKRNLERAG-V-KNVHVILGDG  136 (215)
T ss_dssp             HHHHHHHHTT-C-CSEEEEESCG
T ss_pred             HHHHHHHHcC-C-ceeEEEECcc
Confidence            9999999987 4 4699999874

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8e-08  Score=86.35  Aligned_cols=57  Identities=12%  Similarity=0.159  Sum_probs=46.0

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~  161 (384)
                      +++++..++..         ....+|||+|||+|..+..||.  .+++|+|+|+|+.|++.|+++...
T Consensus        33 l~~~~~~~l~~---------~~~~rvLd~GCG~G~~a~~LA~--~G~~V~gvD~S~~ai~~a~~~~~~   89 (229)
T d2bzga1          33 LKKHLDTFLKG---------KSGLRVFFPLCGKAVEMKWFAD--RGHSVVGVEISELGIQEFFTEQNL   89 (229)
T ss_dssp             HHHHHHHHHTT---------CCSCEEEETTCTTCTHHHHHHH--TTCEEEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCC---------CCCCEEEEeCCCCcHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhhc
Confidence            45666666643         2456999999999999988885  488999999999999999887653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.56  E-value=1.6e-07  Score=85.38  Aligned_cols=82  Identities=20%  Similarity=0.142  Sum_probs=60.1

Q ss_pred             EEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHH
Q 016734           76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA  155 (384)
Q Consensus        76 ~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A  155 (384)
                      .+.+..+.-++. |....+   +.+.|.-         ....+|||||||+|.++.+|+..  ..+|+++|+++++++.|
T Consensus        44 ~l~i~~g~~~~~-p~~~a~---ml~~L~l---------~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A  108 (224)
T d1vbfa_          44 ALPILPGINTTA-LNLGIF---MLDELDL---------HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYA  108 (224)
T ss_dssp             CEEEETTEEECC-HHHHHH---HHHHTTC---------CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHH
T ss_pred             CcccCCCCceeh-hhhHHH---HHHHhhh---------cccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHH
Confidence            455666777776 644332   3344432         23458999999999998888754  45899999999999999


Q ss_pred             HHHHHHCCCCCCceEEEEcCC
Q 016734          156 EKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       156 ~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ++|.....    ++.++.+|.
T Consensus       109 ~~~~~~~~----nv~~~~~d~  125 (224)
T d1vbfa_         109 SKLLSYYN----NIKLILGDG  125 (224)
T ss_dssp             HHHHTTCS----SEEEEESCG
T ss_pred             HHHHhccc----ccccccCch
Confidence            99987543    689988873

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.54  E-value=1.3e-07  Score=83.32  Aligned_cols=50  Identities=12%  Similarity=0.187  Sum_probs=36.3

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHH
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVAL  152 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al  152 (384)
                      .+..+.+++..         ....+|||.|||+|.+...+..+.. ...++|+|+++.++
T Consensus         7 i~~~m~~l~~~---------~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~   57 (223)
T d2ih2a1           7 VVDFMVSLAEA---------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL   57 (223)
T ss_dssp             HHHHHHHHCCC---------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC
T ss_pred             HHHHHHHhcCC---------CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH
Confidence            34555565532         2456899999999998777766554 46899999998654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.3e-06  Score=80.16  Aligned_cols=56  Identities=16%  Similarity=0.118  Sum_probs=41.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhh----ccC--CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS----LLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~----~~~--~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~  171 (384)
                      ...+|||||||+|.+...|+..    +++  +.++|||+|+.+++.|+++++....+ ..+.+
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~-~~~~~  101 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL-ENVKF  101 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC-TTEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc-ccccc
Confidence            3458999999999887666543    333  46899999999999999998765422 34444

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=98.41  E-value=9.3e-08  Score=88.31  Aligned_cols=62  Identities=18%  Similarity=0.063  Sum_probs=48.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc----------------------------------------cCCEEEEEeCcHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL----------------------------------------LGWSFVGSDMTDVALEW  154 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~----------------------------------------~~~~v~gvDid~~al~~  154 (384)
                      .+..++|-.||||+|.+..|...                                        ....++|.|+|+.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            45679999999999987654310                                        01246899999999999


Q ss_pred             H---HHHHHHCCCCCCceEEEEcCCC
Q 016734          155 A---EKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       155 A---~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      |   ++|++..+ +.+.|.+...|..
T Consensus       130 A~~~r~n~~~Ag-l~~~i~i~~~d~f  154 (249)
T d1o9ga_         130 ARRLRERLTAEG-GALPCAIRTADVF  154 (249)
T ss_dssp             HHHHHHHHHHTT-SSCCEEEEECCTT
T ss_pred             HHHHHHHHHHcC-CCceeeeeecchh
Confidence            9   56999998 8899999998864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.39  E-value=9e-07  Score=78.37  Aligned_cols=132  Identities=16%  Similarity=0.133  Sum_probs=91.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ....+||+|||+|..+..++.+.++.+++|+|.|++|++.|+++.+..+   +++.+++++..+.               
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~---~r~~~~~~~f~~~---------------   84 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREA---------------   84 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGH---------------
T ss_pred             CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc---ccccchhHHHhhH---------------
Confidence            4568999999999999999988899999999999999999999987654   5799998864310               


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                        ..++...  ..++||.|+-.-.+ ++.+-.         +..    
T Consensus        85 ----------------------------------~~~~~~~--~~~~vdgIl~DlGv-Ss~Qld---------~~~----  114 (192)
T d1m6ya2          85 ----------------------------------DFLLKTL--GIEKVDGILMDLGV-STYQLK---------GEN----  114 (192)
T ss_dssp             ----------------------------------HHHHHHT--TCSCEEEEEEECSC-CHHHHH---------TSH----
T ss_pred             ----------------------------------HHHHHHc--CCCCcceeeeccch-hHhhhh---------hhh----
Confidence                                              0011111  23678888766544 221111         111    


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHH--HHHHHHH
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKF--LISKLRK  319 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~--l~~~L~~  319 (384)
                         -|+.+..+.+..+..+++.+|-+.+.-  ..++++  +.+.+++
T Consensus       115 ---r~~~~~~~~L~~a~~~Lk~gG~l~ii~--f~s~Edr~vk~~f~~  156 (192)
T d1m6ya2         115 ---RELENLKEFLKKAEDLLNPGGRIVVIS--FHSLEDRIVKETFRN  156 (192)
T ss_dssp             ---THHHHHHHHHHHGGGGEEEEEEEEEEE--SSHHHHHHHHHHHHH
T ss_pred             ---ccchhHHHHHHHHHHhcCCCCeeeeec--cccHHHHHHHHHHhh
Confidence               168899999999999988888775433  334433  4455554

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.38  E-value=5e-07  Score=82.48  Aligned_cols=57  Identities=12%  Similarity=0.103  Sum_probs=47.9

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.+...|+..  +.+++|+|+|+..++.++++...+    ++++++++|..
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~----~n~~i~~~D~l   77 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDIL   77 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGG
T ss_pred             CCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcc----cchhhhhhhhh
Confidence            4568999999999999988864  468999999999999998876543    36999998854

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.3e-06  Score=80.03  Aligned_cols=47  Identities=17%  Similarity=0.104  Sum_probs=38.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      ++.++||||||+|...++++... ..+|+|+|+++.+++.|+++++..
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~  100 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEE  100 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTC
T ss_pred             CCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcC
Confidence            56799999999997765555444 348999999999999999988654

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1e-06  Score=82.43  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      +.+..|.+.+..         .....|||||+|.|++...|+.+  +.+++|+|+|+..++..++....+. ..++++++
T Consensus         8 ~i~~kIv~~~~~---------~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~-~~~~~~~i   75 (278)
T d1zq9a1           8 LIINSIIDKAAL---------RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTP-VASKLQVL   75 (278)
T ss_dssp             HHHHHHHHHTCC---------CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTST-TGGGEEEE
T ss_pred             HHHHHHHHHhCC---------CCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhc-cccchhhh
Confidence            345566665532         23458999999999999999865  4599999999999999999988775 66789999


Q ss_pred             EcCCC
Q 016734          173 KVDNS  177 (384)
Q Consensus       173 ~~d~~  177 (384)
                      ++|..
T Consensus        76 ~~D~l   80 (278)
T d1zq9a1          76 VGDVL   80 (278)
T ss_dssp             ESCTT
T ss_pred             HHHHh
Confidence            99865

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.31  E-value=6.9e-07  Score=80.85  Aligned_cols=91  Identities=14%  Similarity=0.182  Sum_probs=62.3

Q ss_pred             CcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc------cCCEEEEEeC
Q 016734           74 GLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL------LGWSFVGSDM  147 (384)
Q Consensus        74 gl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~------~~~~v~gvDi  147 (384)
                      +..+.+..++.+-. |-..   -.+.++|....       ....+|||||||||..+.+|+...      +..+|+++|+
T Consensus        50 D~~lpi~~~~~is~-P~~~---a~~l~~L~~~l-------~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~  118 (223)
T d1r18a_          50 DAPQPIGGGVTISA-PHMH---AFALEYLRDHL-------KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEH  118 (223)
T ss_dssp             SSCEEEETTEEECC-HHHH---HHHHHHTTTTC-------CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEES
T ss_pred             CCCccccCCceeeh-hhhH---HHHHHHHhhcc-------CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEec
Confidence            44566677776655 5332   23444443211       234699999999999988887643      3458999999


Q ss_pred             cHHHHHHHHHHHHHCCCC----CCceEEEEcCC
Q 016734          148 TDVALEWAEKNVKSNPHI----SELIEIRKVDN  176 (384)
Q Consensus       148 d~~al~~A~~Ni~~n~~l----~~~I~~~~~d~  176 (384)
                      ++++++.|++|+..++ +    ..+|.++++|.
T Consensus       119 ~~~l~~~a~~~l~~~~-~~~~~~~nv~~~~~d~  150 (223)
T d1r18a_         119 QAELVRRSKANLNTDD-RSMLDSGQLLIVEGDG  150 (223)
T ss_dssp             CHHHHHHHHHHHHHHH-HHHHHHTSEEEEESCG
T ss_pred             CHHHHHHHHHhhhhcc-hhhcCccEEEEEeccc
Confidence            9999999999986542 1    13588888874

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=8.6e-06  Score=72.79  Aligned_cols=111  Identities=15%  Similarity=0.079  Sum_probs=70.2

Q ss_pred             ccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHH
Q 016734           53 IDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPL  132 (384)
Q Consensus        53 idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~  132 (384)
                      +++++...-+...-.-+...|+-.+.+-.-.     -....+..++.|.+....  ..    ...+++|||||+|.=++.
T Consensus        14 ~~ls~~q~~~L~~y~~ll~~~N~~~NLts~~-----~~~~~~~rHi~DSl~~~~--~~----~~~~ilDiGsGaG~PGi~   82 (207)
T d1jsxa_          14 ISLTDHQKNQLIAYVNMLHKWNKAYNLTSVR-----DPNEMLVRHILDSIVVAP--YL----QGERFIDVGTGPGLPGIP   82 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHGG--GC----CSSEEEEETCTTTTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCceeeEECC-----CHHHHHHHHhcchHhhhh--hh----cCCceeeeeccCCceeee
Confidence            5555544433333333334455444332211     122345667777654321  11    235899999999999999


Q ss_pred             HHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          133 LGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       133 La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ||-.+|+.+|+.+|.+..-+...++-+...+ +. +++++++..
T Consensus        83 laI~~p~~~~~Lves~~KK~~FL~~~~~~L~-L~-nv~v~~~R~  124 (207)
T d1jsxa_          83 LSIVRPEAHFTLLDSLGKRVRFLRQVQHELK-LE-NIEPVQSRV  124 (207)
T ss_dssp             HHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-CS-SEEEEECCT
T ss_pred             hhhhcccceEEEEecchHHHHHHHHHHHHcC-Cc-ceeeeccch
Confidence            9988999999999999999999999999887 65 588887753

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.21  E-value=1.3e-06  Score=79.28  Aligned_cols=75  Identities=11%  Similarity=0.185  Sum_probs=63.6

Q ss_pred             cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus        89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      |+.-.++..+....            .+.+||+||||+|.-++.+|...+ +.+++.+|++++..+.|++|+++.+ +.+
T Consensus        45 ~~~g~~L~~L~~~~------------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g-~~~  111 (227)
T d1susa1          45 ADEGQFLSMLLKLI------------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDH  111 (227)
T ss_dssp             HHHHHHHHHHHHHH------------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGG
T ss_pred             HHHHHHHHHHHHhc------------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc-ccc
Confidence            55666666666554            346899999999998888887776 6799999999999999999999998 899


Q ss_pred             ceEEEEcCC
Q 016734          168 LIEIRKVDN  176 (384)
Q Consensus       168 ~I~~~~~d~  176 (384)
                      +|+++.++.
T Consensus       112 ~i~~~~g~a  120 (227)
T d1susa1         112 KIDFREGPA  120 (227)
T ss_dssp             GEEEEESCH
T ss_pred             ceeeeehHH
Confidence            999999874

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=3.1e-06  Score=85.30  Aligned_cols=61  Identities=16%  Similarity=0.075  Sum_probs=45.0

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc------------------CCEEEEEeCcHHHHHHH
Q 016734           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL------------------GWSFVGSDMTDVALEWA  155 (384)
Q Consensus        94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~------------------~~~v~gvDid~~al~~A  155 (384)
                      .++.+.+++..         ....+|+|.+||+|.+.+.+.....                  ...++|+|+++.++..|
T Consensus       152 Iv~~mv~ll~~---------~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la  222 (524)
T d2ar0a1         152 LIKTIIHLLKP---------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  222 (524)
T ss_dssp             HHHHHHHHHCC---------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             hhHhhhhcccC---------ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence            45566666642         2345899999999998766544321                  12589999999999999


Q ss_pred             HHHHHHCC
Q 016734          156 EKNVKSNP  163 (384)
Q Consensus       156 ~~Ni~~n~  163 (384)
                      +.|+-.++
T Consensus       223 ~~nl~l~~  230 (524)
T d2ar0a1         223 LMNCLLHD  230 (524)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHhhc
Confidence            99998765

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=2.3e-06  Score=76.75  Aligned_cols=62  Identities=8%  Similarity=0.049  Sum_probs=55.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ++.+|||||||+|.-++.+|...+ +.+++++|++++.++.|+.|++..+ +.++|+++.++..
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g-l~~~i~l~~Gd~~  118 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG-LQDKVTILNGASQ  118 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHH
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC-CCccceeeecccc
Confidence            456899999999999888887764 6899999999999999999999998 8999999999843

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.15  E-value=9.8e-08  Score=87.89  Aligned_cols=57  Identities=12%  Similarity=0.189  Sum_probs=45.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ....|||||||+|++...|+..  +.+++|+|+|+.+++.+++....    ..+++++++|..
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~----~~n~~ii~~D~l   85 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL----NTRVTLIHQDIL   85 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT----CSEEEECCSCCT
T ss_pred             CCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh----ccchhhhhhhhh
Confidence            3468999999999999888865  56999999999988877655432    246899888864

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.3e-06  Score=80.14  Aligned_cols=64  Identities=16%  Similarity=0.127  Sum_probs=51.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC-------CCCCCceEEEEcCCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN-------PHISELIEIRKVDNSE  178 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n-------~~l~~~I~~~~~d~~~  178 (384)
                      ...+|||||||+|.+...+|...+..+++|+|+++.+++.|+++++..       +.-..+|+++++|..+
T Consensus       151 ~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  221 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence            345899999999999888887777779999999999999999887642       1112469999999653

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=2.5e-05  Score=73.78  Aligned_cols=62  Identities=11%  Similarity=-0.033  Sum_probs=48.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC--CC-CCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN--PH-ISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n--~~-l~~~I~~~~~d~  176 (384)
                      .+.+||.||.|.|.++..+++..+..++++||||++.++.|++.....  +. -..+++++.+|.
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da  141 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA  141 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchH
Confidence            467999999999998877766556779999999999999999986321  11 135799988874

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=8.7e-06  Score=73.24  Aligned_cols=62  Identities=16%  Similarity=0.102  Sum_probs=55.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.-++.+|...+ +.+++.+|++++..+.|++|++..+ ++++|+++.++..
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag-~~~~i~~~~Gda~  121 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPAL  121 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCHH
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC-ccceEEEEEeehh
Confidence            356999999999999888887765 6799999999999999999999998 8999999999843

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.7e-06  Score=79.68  Aligned_cols=70  Identities=11%  Similarity=0.059  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      +.++.|.+.+..         .....||+||||.|++...|+..  +.+++|+|+|+..++..++...    ..++++++
T Consensus         8 ~~~~~Iv~~~~~---------~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~----~~~~~~ii   72 (252)
T d1qyra_           8 FVIDSIVSAINP---------QKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPF----LGPKLTIY   72 (252)
T ss_dssp             HHHHHHHHHHCC---------CTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTT----TGGGEEEE
T ss_pred             HHHHHHHHhcCC---------CCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhh----hccchhHH
Confidence            456677777643         23457999999999999888864  4689999999999998876432    23479999


Q ss_pred             EcCCC
Q 016734          173 KVDNS  177 (384)
Q Consensus       173 ~~d~~  177 (384)
                      ++|..
T Consensus        73 ~~D~l   77 (252)
T d1qyra_          73 QQDAM   77 (252)
T ss_dssp             CSCGG
T ss_pred             hhhhh
Confidence            99865

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=8e-06  Score=80.01  Aligned_cols=48  Identities=13%  Similarity=-0.001  Sum_probs=42.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      ...++||||||.|-+...+|...+..+++|+|+++.+++.|+++++..
T Consensus       216 pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~  263 (406)
T d1u2za_         216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEEL  263 (406)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence            345899999999999988888877779999999999999999998754

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.95  E-value=0.00012  Score=66.65  Aligned_cols=166  Identities=11%  Similarity=0.078  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (384)
Q Consensus        91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~  170 (384)
                      ...|..++.|.+.....  . ......+++|||||+|.=++.||-.+|+.+++.+|-+..-+...+.-++..+ |+ .+.
T Consensus        49 ~~i~~rHi~DSl~~~~~--~-~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~-L~-n~~  123 (239)
T d1xdza_          49 KEVYLKHFYDSITAAFY--V-DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ-LE-NTT  123 (239)
T ss_dssp             HHHHHHTHHHHHGGGGT--S-CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEE
T ss_pred             HHHHHHhccchhhhhhh--h-cccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC-CC-CcE
Confidence            45567778887653211  1 0123468999999999999899888999999999999999999888888887 65 477


Q ss_pred             EEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCC
Q 016734          171 IRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP  250 (384)
Q Consensus       171 ~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPP  250 (384)
                      ++++..-+                                                     +....+..+.||+|+|=  
T Consensus       124 i~~~R~E~-----------------------------------------------------~~~~~~~~~~~D~v~sR--  148 (239)
T d1xdza_         124 FCHDRAET-----------------------------------------------------FGQRKDVRESYDIVTAR--  148 (239)
T ss_dssp             EEESCHHH-----------------------------------------------------HTTCTTTTTCEEEEEEE--
T ss_pred             EEeehhhh-----------------------------------------------------ccccccccccceEEEEh--
Confidence            77764210                                                     00000124679998872  


Q ss_pred             cccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCC--HHHHHHHHHHcCCeEEEEE
Q 016734          251 FFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSN--LKFLISKLRKVGVTIVKTT  328 (384)
Q Consensus       251 y~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~--l~~l~~~L~~~g~~~v~~~  328 (384)
                                    ++              +-+..+++-+..+.+.+|.+.+|-|+...  +++..+.+...|+....+.
T Consensus       149 --------------Av--------------a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~  200 (239)
T d1xdza_         149 --------------AV--------------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIH  200 (239)
T ss_dssp             --------------CC--------------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             --------------hh--------------hCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence                          11              11556667777888889998899995432  4444556777787654444


Q ss_pred             Eee--CCCeeEEEEEEec
Q 016734          329 EFV--QGQTCRWGLAWSF  344 (384)
Q Consensus       329 e~~--qG~t~Rw~~AWsf  344 (384)
                      ++.  .....|.++-+.-
T Consensus       201 ~~~lp~~~~~r~lv~i~K  218 (239)
T d1xdza_         201 SFKLPIEESDRNIMVIRK  218 (239)
T ss_dssp             EEECTTTCCEEEEEEEEE
T ss_pred             EEeCCCCCCCEEEEEEEE
Confidence            443  2234677776653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.87  E-value=0.00013  Score=67.39  Aligned_cols=150  Identities=13%  Similarity=0.086  Sum_probs=92.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC--------CCCCceEEEEcCCCCCCCccccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--------HISELIEIRKVDNSESTPSIQES  186 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~--------~l~~~I~~~~~d~~~~~p~~~~~  186 (384)
                      .+.+||-||.|.|.++..+.+ .+..++++||||++.++.|++-...++        .-..|++++.+|...        
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~--------  142 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFE--------  142 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHH--------
T ss_pred             CCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHH--------
Confidence            567999999999988776654 455699999999999999987543221        124688998887321        


Q ss_pred             ccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCcccc
Q 016734          187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSC  266 (384)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~  266 (384)
                                                                  ++    ...++||+||+..+- +..      +    
T Consensus       143 --------------------------------------------~l----~~~~~yDvIi~D~~~-~~~------~----  163 (276)
T d1mjfa_         143 --------------------------------------------FI----KNNRGFDVIIADSTD-PVG------P----  163 (276)
T ss_dssp             --------------------------------------------HH----HHCCCEEEEEEECCC-CC------------
T ss_pred             --------------------------------------------HH----hccCCCCEEEEeCCC-CCC------C----
Confidence                                                        11    235789999998742 110      0    


Q ss_pred             CCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCC----CHHHHHHHHHHcCCeEEEEEEee-CC--CeeEEE
Q 016734          267 GGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS----NLKFLISKLRKVGVTIVKTTEFV-QG--QTCRWG  339 (384)
Q Consensus       267 ~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~----~l~~l~~~L~~~g~~~v~~~e~~-qG--~t~Rw~  339 (384)
                         ...+.    ..+|++.    ..+.+++.|++.+-.+...    .+..+.+.|++. |..+...... .+  ...-|+
T Consensus       164 ---~~~L~----t~eF~~~----~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~y~~~vP~y~~~w~f~  231 (276)
T d1mjfa_         164 ---AKVLF----SEEFYRY----VYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYYYSFPVIGYASPWAFL  231 (276)
T ss_dssp             ------TT----SHHHHHH----HHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEEEEECCTTSSSSEEEE
T ss_pred             ---ccccc----CHHHHHh----hHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh-CCeeEEEEecCcCCCCceEEE
Confidence               01111    2456544    4567788999877665322    244555566665 6667766542 22  224555


Q ss_pred             EEEec
Q 016734          340 LAWSF  344 (384)
Q Consensus       340 ~AWsf  344 (384)
                      +|++-
T Consensus       232 ~as~~  236 (276)
T d1mjfa_         232 VGVKG  236 (276)
T ss_dssp             EEEES
T ss_pred             EEeCC
Confidence            66553

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.87  E-value=0.00021  Score=64.72  Aligned_cols=54  Identities=17%  Similarity=0.065  Sum_probs=44.1

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ...+|||||||+|.++..+++++|+.+++..|+-+ .       ++... ..++|+++.+|..
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v-------i~~~~-~~~ri~~~~gd~~  134 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-V-------IENAP-PLSGIEHVGGDMF  134 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-H-------HTTCC-CCTTEEEEECCTT
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-h-------hhccC-CCCCeEEecCCcc
Confidence            34689999999999999999999999999999843 2       33444 5679999988754

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.74  E-value=0.00038  Score=62.98  Aligned_cols=53  Identities=13%  Similarity=0.040  Sum_probs=43.7

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~  177 (384)
                      ..+|||||||+|.++..+++++|+.+++..|..+ .       ++..+ ..+||+++.+|..
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v-------i~~~~-~~~rv~~~~gD~f  133 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-V-------VENLS-GSNNLTYVGGDMF  133 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-H-------HTTCC-CBTTEEEEECCTT
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-H-------HHhCc-ccCceEEEecCcc
Confidence            4589999999999999999999999999999843 3       33344 6789999998854

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.74  E-value=3.6e-05  Score=74.51  Aligned_cols=51  Identities=16%  Similarity=-0.038  Sum_probs=45.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~  167 (384)
                      +.+|||..||||.-++..+.+.+..+|+++|+|+.|++++++|++.|+ +.+
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~-~~~   96 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNF-DGE   96 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHC-CSC
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcC-ccc
Confidence            468999999999999988887776699999999999999999999997 543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=0.00012  Score=68.56  Aligned_cols=62  Identities=16%  Similarity=0.057  Sum_probs=48.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC-CC-CCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI-SELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~-~l-~~~I~~~~~d~  176 (384)
                      .+.+||=||.|.|.+...+++..+..++++||||++.++.|++-...+. .+ ..|++++.+|.
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da  152 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG  152 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH
Confidence            4679999999999988777665566799999999999999998764331 12 35899998874

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.59  E-value=0.0003  Score=64.92  Aligned_cols=62  Identities=11%  Similarity=0.103  Sum_probs=48.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC-CC-CCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI-SELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~-~l-~~~I~~~~~d~  176 (384)
                      .+.+||-||-|.|.++..+.+..+..+++.||||++.++.|++-...+. .+ ..|++++.+|.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~  138 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG  138 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH
Confidence            4579999999999988777655556799999999999999998764321 12 35899988874

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00075  Score=62.56  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=62.1

Q ss_pred             cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (384)
Q Consensus        72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a  151 (384)
                      +||.-+.+.....+-- -+-..|-+.+.......       ...+.+||=||-|.|.++-.+.+..+..+++.+|||++.
T Consensus        43 ~~g~~L~lDg~~q~~~-~de~~Yhe~l~h~~l~~-------~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~V  114 (285)
T d2o07a1          43 TYGNVLVLDGVIQCTE-RDEFSYQEMIANLPLCS-------HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDV  114 (285)
T ss_dssp             SSCEEEEETTEEEEET-TTHHHHHHHHHHHHHTT-------SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHH
T ss_pred             CCCeEEEECCcEEEec-CCHHHHHHHhccHhhhh-------CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHH
Confidence            4666555554444332 22233333333322221       125679999999999988777655556799999999999


Q ss_pred             HHHHHHHHHHC--CCCCCceEEEEcCC
Q 016734          152 LEWAEKNVKSN--PHISELIEIRKVDN  176 (384)
Q Consensus       152 l~~A~~Ni~~n--~~l~~~I~~~~~d~  176 (384)
                      ++.|++-...+  ..-..|++++.+|.
T Consensus       115 v~~a~~~~~~~~~~~~d~rv~i~~~Da  141 (285)
T d2o07a1         115 IQVSKKFLPGMAIGYSSSKLTLHVGDG  141 (285)
T ss_dssp             HHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred             HHHHHhhchhhccccCCCCceEEEccH
Confidence            99998865322  11235899998873

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.44  E-value=0.00076  Score=60.61  Aligned_cols=54  Identities=15%  Similarity=0.098  Sum_probs=43.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      ..+|||||||+|..+..+++++|+.+++..|+-+.        ++... ..+++.++.+|..+
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v--------i~~~~-~~~r~~~~~~d~~~  135 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV--------IEDAP-SYPGVEHVGGDMFV  135 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT--------TTTCC-CCTTEEEEECCTTT
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh--------hhhcc-cCCceEEecccccc
Confidence            46899999999999999999999999999998642        23333 55789999888643

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.31  E-value=0.00049  Score=64.75  Aligned_cols=97  Identities=11%  Similarity=0.030  Sum_probs=61.6

Q ss_pred             ccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (384)
Q Consensus        71 ~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~  150 (384)
                      ..||.-+.+.....+-- -+...|=+.+.......       ...+.+||-||-|.|.++..+.+..+..+++.||||++
T Consensus        70 ~~~G~~L~LDg~~q~~e-~de~~YhE~l~h~pl~~-------~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~  141 (312)
T d2b2ca1          70 TTYGNVLVLDGIVQATE-RDEFSYQEMLAHLPMFA-------HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM  141 (312)
T ss_dssp             TTTEEEEEETTEEEEES-SSSSHHHHHHHHHHHHH-------SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH
T ss_pred             CCcCCEEEECCceeeec-ccHHHHHHHhhhHHHhc-------CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHH
Confidence            45676666665544433 12223333333221111       12467999999999999877765545569999999999


Q ss_pred             HHHHHHHHHHHCCC-C-CCceEEEEcC
Q 016734          151 ALEWAEKNVKSNPH-I-SELIEIRKVD  175 (384)
Q Consensus       151 al~~A~~Ni~~n~~-l-~~~I~~~~~d  175 (384)
                      .++.|++-...+.. + ..|++++.+|
T Consensus       142 Vv~~a~~~~~~~~~~~~dprv~i~i~D  168 (312)
T d2b2ca1         142 VIDVAKKFLPGMSCGFSHPKLDLFCGD  168 (312)
T ss_dssp             HHHHHHHHCTTTSGGGGCTTEEEECSC
T ss_pred             HHHHHHhhchhhccccCCCCeEEEEch
Confidence            99999987643320 1 2578888776

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0014  Score=60.67  Aligned_cols=148  Identities=14%  Similarity=0.093  Sum_probs=87.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|+|.|.=...++... ....++|+|+++.-++..++|+++.+ +. .+.+...|....              
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g-~~-~~~~~~~d~~~~--------------  157 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-VS-CCELAEEDFLAV--------------  157 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEECCGGGS--------------
T ss_pred             ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC-cc-ceeeeehhhhhh--------------
Confidence            45689999999998777777654 45799999999999999999999998 54 477777663210              


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                             .......+.||.|++.||=-.+... ...|.........+.
T Consensus       158 ---------------------------------------~~~~~~~~~fD~VL~DaPCSg~G~~-~r~p~~~~~~~~~~~  197 (293)
T d2b9ea1         158 ---------------------------------------SPSDPRYHEVHYILLDPSCSGSGMP-SRQLEEPGAGTPSPV  197 (293)
T ss_dssp             ---------------------------------------CTTCGGGTTEEEEEECCCCCC-------------------C
T ss_pred             ---------------------------------------cccccccceeeEEeecCcccchhhh-cccchhhccCCcchh
Confidence                                                   0000023679999999995443321 122322111111100


Q ss_pred             cccCchH-HHHHHHHHHHHHhhccCe-E-E-EEEecCCCCHHHHHHHHHHcC
Q 016734          274 VCSGGER-AFITRIIEDSVALKQTFR-W-Y-TSMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       274 ~~~GGel-~Fv~~ii~eS~~l~~~~~-w-~-t~~vgk~~~l~~l~~~L~~~g  321 (384)
                      ..  -.+ .+-.+|+..+..+ +.+| . | ||-+...++-+-|...|+++.
T Consensus       198 ~~--~~l~~~Q~~il~~a~~l-~~gG~lvYsTCSl~~~ENe~vV~~~L~~~~  246 (293)
T d2b9ea1         198 RL--HALAGFQQRALCHALTF-PSLQRLVYSTCSLCQEENEDVVRDALQQNP  246 (293)
T ss_dssp             CH--HHHHHHHHHHHHHHTTC-TTCCEEEEEESCCCGGGTHHHHHHHHTTST
T ss_pred             hH--HHHhhhhHHhHHHhhhc-ccccEEEEeeccCChhHhHHHHHHHHHhCC
Confidence            00  012 2334566776655 4444 2 3 455566777777778887654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.97  E-value=0.004  Score=57.57  Aligned_cols=62  Identities=8%  Similarity=0.005  Sum_probs=48.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC--CCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN--PHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n--~~l~~~I~~~~~d~  176 (384)
                      .+.+||=||-|.|.++-.+.+..+..++++||||++.++.|++-...+  ..-..+++++.+|.
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da  143 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG  143 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccH
Confidence            467999999999999877765545568999999999999998854321  11246899988873

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0022  Score=59.05  Aligned_cols=145  Identities=12%  Similarity=0.012  Sum_probs=95.2

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ...+|||+|+|.|.=...|+....+..++|+|+++.-++..++|+++.+ +.. +.+...+..                 
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g-~~~-~~~~~~~~~-----------------  162 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-MKA-TVKQGDGRY-----------------  162 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-CCC-EEEECCTTC-----------------
T ss_pred             ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc-ccc-eeeeccccc-----------------
Confidence            4568999999999888888877677899999999999999999999998 542 333222110                 


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                                                          ....  ...+.||.|++-||=-.+... ..+|.....-....+ 
T Consensus       163 ------------------------------------~~~~--~~~~~fd~IL~DaPCSg~G~~-rr~p~~~~~~~~~~~-  202 (284)
T d1sqga2         163 ------------------------------------PSQW--CGEQQFDRILLDAPCSATGVI-RRHPDIKWLRRDRDI-  202 (284)
T ss_dssp             ------------------------------------THHH--HTTCCEEEEEEECCCCCGGGT-TTCTTHHHHCCTTHH-
T ss_pred             ------------------------------------cchh--cccccccEEEEeccccccCcc-ccccchhhccccchh-
Confidence                                                0000  124679999999997655432 223432211111100 


Q ss_pred             ccCch-HHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734          275 CSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (384)
Q Consensus       275 ~~GGe-l~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g  321 (384)
                         -+ ...=.+|++.+..+++.+|.+   ||-+...++-+-|...|+++.
T Consensus       203 ---~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~  250 (284)
T d1sqga2         203 ---PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA  250 (284)
T ss_dssp             ---HHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             ---hHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCC
Confidence               01 234456888888888877643   455666777788888888754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.82  E-value=0.0063  Score=56.65  Aligned_cols=146  Identities=13%  Similarity=0.079  Sum_probs=94.3

Q ss_pred             CCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~  193 (384)
                      ...+|||+|+|.|.=...++.... ...++|+|+++.-+...++|+++.+ +. .|.+...|...               
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~-~~-~i~~~~~d~~~---------------  178 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-VL-NVILFHSSSLH---------------  178 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-CC-SEEEESSCGGG---------------
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH-hh-ccccccccccc---------------
Confidence            346899999999987667776554 5689999999999999999999987 54 35554443110               


Q ss_pred             cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (384)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~  273 (384)
                                                            +   ......||.|++-||=-.+... ...|.....-....+
T Consensus       179 --------------------------------------~---~~~~~~fD~ILvDaPCSg~G~~-~r~p~~~~~~~~~~~  216 (313)
T d1ixka_         179 --------------------------------------I---GELNVEFDKILLDAPCTGSGTI-HKNPERKWNRTMDDI  216 (313)
T ss_dssp             --------------------------------------G---GGGCCCEEEEEEECCTTSTTTC-C--------CCHHHH
T ss_pred             --------------------------------------c---ccccccccEEEEccccccCCce-eeccchhhhhhhhHH
Confidence                                                  0   0125679999999987654322 123322211111100


Q ss_pred             cccCch-HHHHHHHHHHHHHhhccCeE--E-EEEecCCCCHHHHHHHHHHcCCe
Q 016734          274 VCSGGE-RAFITRIIEDSVALKQTFRW--Y-TSMVGRKSNLKFLISKLRKVGVT  323 (384)
Q Consensus       274 ~~~GGe-l~Fv~~ii~eS~~l~~~~~w--~-t~~vgk~~~l~~l~~~L~~~g~~  323 (384)
                          -+ ...-.+|+..+..+.+.+|.  | ||-+.+.++-.-|...|++.++.
T Consensus       217 ----~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~  266 (313)
T d1ixka_         217 ----KFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE  266 (313)
T ss_dssp             ----HHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             ----HHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCE
Confidence                01 24455688888888887773  3 56667778888888888887643

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.011  Score=50.77  Aligned_cols=130  Identities=13%  Similarity=0.059  Sum_probs=85.0

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ....++|..+|.|.-+..+..+  +.+|+|+|+|++|++.|+..      ..+++.+++++..+                
T Consensus        18 ~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~------~~~~~~~~~~~f~~----------------   73 (182)
T d1wg8a2          18 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL------HLPGLTVVQGNFRH----------------   73 (182)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT------CCTTEEEEESCGGG----------------
T ss_pred             CCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc------cccceeEeehHHHH----------------
Confidence            4568999999999887777654  56999999999999988752      23578998876431                


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                         +                  .            .++...  ..+.+|.|+..--+-+. +-.  +|       .    
T Consensus        74 ---~------------------~------------~~l~~~--~~~~vdgIl~DLGvSs~-qld--~~-------~----  104 (182)
T d1wg8a2          74 ---L------------------K------------RHLAAL--GVERVDGILADLGVSSF-HLD--DP-------S----  104 (182)
T ss_dssp             ---H------------------H------------HHHHHT--TCSCEEEEEEECSCCHH-HHH--CG-------G----
T ss_pred             ---H------------------H------------HHHHHc--CCCccCEEEEEccCCHH-Hhh--cc-------h----
Confidence               0                  0            011111  23578888877544221 111  11       1    


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHH--HHHHHHHHcCC
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLK--FLISKLRKVGV  322 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~--~l~~~L~~~g~  322 (384)
                         -|+.|....++.+..+++.+|-+..+.  ..+++  .+.+.+++.++
T Consensus       105 ---re~~~~~~~L~~~~~~lk~gg~~~ii~--fhs~Ed~ivk~~~~e~~~  149 (182)
T d1wg8a2         105 ---DELNALKEFLEQAAEVLAPGGRLVVIA--FHSLEDRVVKRFLRESGL  149 (182)
T ss_dssp             ---THHHHHHHHHHHHHHHEEEEEEEEEEE--CSHHHHHHHHHHHHHHCS
T ss_pred             ---HHHHHHHHHHHHHHhhhCCCCeEEEEe--cccchhHHHHHHHhhccc
Confidence               167888899999999988888765444  33444  36677776654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.0017  Score=60.88  Aligned_cols=77  Identities=12%  Similarity=0.085  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (384)
Q Consensus        93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~  172 (384)
                      +.++.|.+.+.-....   ...+...|||||.|.|++...|......-+++++|+|+..++..++...     .++++++
T Consensus        24 ~i~~~Iv~~~~l~~~~---~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~-----~~~~~ii   95 (322)
T d1i4wa_          24 TVYNKIFDKLDLTKTY---KHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-----GSPLQIL   95 (322)
T ss_dssp             HHHHHHHHHHCGGGTC---CCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-----TSSCEEE
T ss_pred             HHHHHHHHHhcCCccc---cccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc-----CCCcEEE
Confidence            3455566665321100   1124568999999999999888766433489999999999998876542     2468999


Q ss_pred             EcCCC
Q 016734          173 KVDNS  177 (384)
Q Consensus       173 ~~d~~  177 (384)
                      ++|..
T Consensus        96 ~~D~l  100 (322)
T d1i4wa_          96 KRDPY  100 (322)
T ss_dssp             CSCTT
T ss_pred             eCchh
Confidence            99865

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.30  E-value=0.0027  Score=57.74  Aligned_cols=60  Identities=10%  Similarity=0.042  Sum_probs=46.8

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC---C----CCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP---H----ISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~---~----l~~~I~~~~~d~  176 (384)
                      ...+|||.-+|.|..+..+|..  +.+|+++|.++......+.++++..   .    +..+++++++|.
T Consensus        88 ~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          88 YLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             BCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             CCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            3458999999999999998865  6789999999998888887765432   0    123789998873

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.92  E-value=0.0047  Score=53.29  Aligned_cols=46  Identities=20%  Similarity=0.262  Sum_probs=34.5

Q ss_pred             CCCCeEEEECCcccH----HHHHHHhhc----cCCEEEEEeCcHHHHHHHHHHH
Q 016734          114 GDKVKGFDIGTGANC----IYPLLGASL----LGWSFVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       114 ~~~~~vLDIGtGsG~----I~~~La~~~----~~~~v~gvDid~~al~~A~~Ni  159 (384)
                      ..+.+|+++|||+|-    |+.++....    ..++++|+|||+.+++.|++.+
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~   76 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI   76 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCc
Confidence            356899999999996    444444322    2358999999999999998654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.59  E-value=0.014  Score=50.78  Aligned_cols=57  Identities=23%  Similarity=0.198  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHH
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK  160 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~  160 (384)
                      +.+++++..+..          .....|||.-+|||..+  +|+...+-+++|+|++++.++.|++.++
T Consensus       199 ~~L~~~lI~~~s----------~~gd~VlDpF~GSGTT~--~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRASS----------NPNDLVLDCFMGSGTTA--IVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHHC----------CTTCEEEESSCTTCHHH--HHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhC----------CCCCEEEECCCCchHHH--HHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            556777766653          24568999999999874  4455567899999999999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.03  E-value=0.013  Score=52.57  Aligned_cols=60  Identities=15%  Similarity=0.062  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~  163 (384)
                      +.+++++..+..          .....|||.-||||..+  +|+..-+-+++|+|+++++++.|++.+..+.
T Consensus       237 ~~L~~rlI~~~s----------~~gdiVlDpF~GSGTT~--~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         237 AKLPEFFIRMLT----------EPDDLVVDIFGGSNTTG--LVAERESRKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             THHHHHHHHHHC----------CTTCEEEETTCTTCHHH--HHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             hHHHHHhhhhcc----------cCCCEEEecCCCCcHHH--HHHHHcCCcEEEEeCCHHHHHHHHHHHHhcc
Confidence            456666666553          24569999999999875  4444568899999999999999988776553

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.78  E-value=0.028  Score=49.52  Aligned_cols=59  Identities=19%  Similarity=0.090  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (384)
Q Consensus        92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n  162 (384)
                      +.++.++.....          .....|||.-+|||..+  +|+..-+-+++|+|+|++.++.|++.++..
T Consensus       194 ~~L~~~~I~~~s----------~~gdiVLDpF~GSGTT~--~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         194 AAVIERLVRALS----------HPGSTVLDFFAGSGVTA--RVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHHS----------CTTCEEEETTCTTCHHH--HHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHhhc----------CCCCEEEecCCCCcHHH--HHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            556666666553          24568999999999874  444455779999999999999999998764

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.16  Score=42.97  Aligned_cols=153  Identities=12%  Similarity=0.108  Sum_probs=87.8

Q ss_pred             CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~  194 (384)
                      ..+||||||+.|.-.-.+.... ....++|+|+.+.           .. + +.+.++++|..+...             
T Consensus        23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~-i-~~~~~~~~d~~~~~~-------------   76 (180)
T d1ej0a_          23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DP-I-VGVDFLQGDFRDELV-------------   76 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CC-C-TTEEEEESCTTSHHH-------------
T ss_pred             CCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cc-c-CCceEeecccccchh-------------
Confidence            4589999999999877666654 4478999998651           12 2 347788887542000             


Q ss_pred             ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (384)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~  274 (384)
                         .                   .           .+...  ....+||+|+|-=-           |..  +|....-.
T Consensus        77 ---~-------------------~-----------~~~~~--~~~~~~DlVlSD~a-----------p~~--sg~~~~d~  108 (180)
T d1ej0a_          77 ---M-------------------K-----------ALLER--VGDSKVQVVMSDMA-----------PNM--SGTPAVDI  108 (180)
T ss_dssp             ---H-------------------H-----------HHHHH--HTTCCEEEEEECCC-----------CCC--CSCHHHHH
T ss_pred             ---h-------------------h-----------hhhhh--ccCcceeEEEeccc-----------chh--cccchhHH
Confidence               0                   0           00111  13467999998621           111  11111000


Q ss_pred             ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCC---eeEEEEEEecC
Q 016734          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ---TCRWGLAWSFV  345 (384)
Q Consensus       275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~---t~Rw~~AWsf~  345 (384)
                      .  --...+...+.-+..+++++|-|.+=+=.......++..|+.. |..|.+++-...|   ..+.+|+-.|.
T Consensus       109 ~--~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~-F~~V~~~KP~aSR~~SsE~Ylv~~g~K  179 (180)
T d1ej0a_         109 P--RAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKVRKPDSSRARSREVYIVATGRK  179 (180)
T ss_dssp             H--HHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEEECCTTSCTTCCEEEEEEEEEC
T ss_pred             H--HHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhh-cCEEEEECCCCcccCCceEEEEEecCC
Confidence            0  0134455555666677888887765444356778888888755 5666666544433   35666665553

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=92.45  E-value=0.12  Score=45.81  Aligned_cols=55  Identities=11%  Similarity=0.021  Sum_probs=37.5

Q ss_pred             CCCeEEEECCcccHHHHHHHhh----ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~----~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~  176 (384)
                      ++.+||+|||+.|.-.+.++..    ..+.+++|+|+++.....+     ..  ..++|+++++|.
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~--~~~~I~~i~gDs  138 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----AS--DMENITLHQGDC  138 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GG--GCTTEEEEECCS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hc--cccceeeeeccc
Confidence            4679999999999655444432    2567999999987543221     11  235799999874

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.19  Score=45.13  Aligned_cols=44  Identities=18%  Similarity=0.157  Sum_probs=32.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHH
Q 016734          116 KVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV  159 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni  159 (384)
                      +.+|+|+.||.|.+...|-....+.+ +.|+|+++.|++.-+.|.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~   46 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF   46 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC
Confidence            56899999999987654433222234 568999999999888773

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=88.79  E-value=0.29  Score=43.86  Aligned_cols=43  Identities=16%  Similarity=0.052  Sum_probs=34.7

Q ss_pred             CCCeEEEECCcccHHHHHHHhhccCCEE-EEEeCcHHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGANCIYPLLGASLLGWSF-VGSDMTDVALEWAEKNV  159 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v-~gvDid~~al~~A~~Ni  159 (384)
                      .+.++||+-||.|.+...  .+..|+++ .|+|+|+.|++.-+.|.
T Consensus        10 ~~lrv~~lFsG~Gg~~~g--l~~aG~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLA--LESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TTCEEEEETCTTTHHHHH--HHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCeEEEECccccHHHHH--HHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence            568999999999988544  44556765 46999999999999886

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=87.97  E-value=0.71  Score=39.31  Aligned_cols=74  Identities=16%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             CCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHH
Q 016734          238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL  317 (384)
Q Consensus       238 ~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L  317 (384)
                      +++++|+|++-|||.-.....+.     . .+..+      =+.|..+.++++.++++.+|.+.+... ......+...+
T Consensus        20 pd~sVdliitdPPY~~~~~~~d~-----~-~~~~~------y~~~~~~~~~e~~rvLk~~g~~~~~~~-~~~~~~~~~~~   86 (256)
T d1g60a_          20 ENKSVQLAVIDPPYNLSKADWDS-----F-DSHNE------FLAFTYRWIDKVLDKLDKDGSLYIFNT-PFNCAFICQYL   86 (256)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGC-----C-SSHHH------HHHHHHHHHHHHHHHEEEEEEEEEEEC-HHHHHHHHHHH
T ss_pred             cCCCcCEEEECCCCCCCcCcCcC-----C-CCHHH------HHHHHHHHHHHhhhccccCcccccccC-chhhhhhhhhh
Confidence            46789999999999754322110     0 00000      167888899999999999887755544 56677788888


Q ss_pred             HHcCCeE
Q 016734          318 RKVGVTI  324 (384)
Q Consensus       318 ~~~g~~~  324 (384)
                      .+.|+..
T Consensus        87 ~~~g~~~   93 (256)
T d1g60a_          87 VSKGMIF   93 (256)
T ss_dssp             HHTTCEE
T ss_pred             hccccee
Confidence            8888753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=1.1  Score=39.23  Aligned_cols=62  Identities=19%  Similarity=0.130  Sum_probs=50.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      +.+.+|=.|+++| |+..++.++  .|++|+.+|.+++.++.+.+-++..+ ...++.+++.|+.+
T Consensus         9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~~~Dls~   72 (257)
T d1xg5a_           9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG-YPGTLIPYRCDLSN   72 (257)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CSSEEEEEECCTTC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCceEEEEEccCCC
Confidence            4568899998877 788887765  58999999999999999888887765 55678888998753

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=87.64  E-value=0.35  Score=42.82  Aligned_cols=40  Identities=13%  Similarity=0.116  Sum_probs=31.7

Q ss_pred             eEEEECCcccHHHHHHHhhccCCEEE-EEeCcHHHHHHHHHHH
Q 016734          118 KGFDIGTGANCIYPLLGASLLGWSFV-GSDMTDVALEWAEKNV  159 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~~~~~v~-gvDid~~al~~A~~Ni  159 (384)
                      +|||+-||.|.+...|  +..|++++ ++|+|+.|.+.-+.|.
T Consensus         2 k~~~lF~G~Gg~~~gl--~~aG~~~~~a~e~d~~a~~~~~~N~   42 (324)
T d1dcta_           2 NLISLFSGAGGLDLGF--QKAGFRIICANEYDKSIWKTYESNH   42 (324)
T ss_dssp             EEEEESCSSCHHHHHH--HHHTCEEEEEEECCHHHHHHHHHHC
T ss_pred             eEEEeCcCcCHHHHHH--HHCCCEEEEEEeCCHHHHHHHHHHC
Confidence            6999999999886444  44467655 8999999998887773

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.51  E-value=0.47  Score=41.60  Aligned_cols=60  Identities=15%  Similarity=-0.016  Sum_probs=47.4

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      +.+.+|=.|.++| |+..++..+  .+++|+.+|.+++.++.+.+.++..+   .++..+..|+.+
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvt~   70 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG---YESSGYAGDVSK   70 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT---CCEEEEECCTTC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCC
Confidence            4567777887776 888888765  57899999999999998888887654   368888888653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.46  E-value=0.51  Score=39.88  Aligned_cols=44  Identities=14%  Similarity=0.077  Sum_probs=32.8

Q ss_pred             CCCeEEEECCcc-cHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734          115 DKVKGFDIGTGA-NCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (384)
Q Consensus       115 ~~~~vLDIGtGs-G~I~~~La~~~~~~~v~gvDid~~al~~A~~N  158 (384)
                      ...+||-+|||. |.++..+++.....+|+++|.++.-++.|++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            345899999987 44555555554555999999999999988753

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.62  E-value=0.47  Score=41.59  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=43.6

Q ss_pred             EEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          119 GFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       119 vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      +|=-|.++| |+..++..+  .+++|+.+|.+++.++.+.+.++..+   .++..+..|+.+
T Consensus         4 alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g---~~~~~~~~Dv~~   61 (255)
T d1gega_           4 ALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG---GHAVAVKVDVSD   61 (255)
T ss_dssp             EEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTS
T ss_pred             EEEcCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCC
Confidence            455677666 787777665  58999999999999998888887765   368888888653

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=85.69  E-value=1.1  Score=42.18  Aligned_cols=60  Identities=12%  Similarity=-0.039  Sum_probs=45.6

Q ss_pred             CCCCeEEEECCcccHHHHHHHhhcc--CCEEEEEeCcHHHHHHHHHHHHHCCCCC---CceEEEEc
Q 016734          114 GDKVKGFDIGTGANCIYPLLGASLL--GWSFVGSDMTDVALEWAEKNVKSNPHIS---ELIEIRKV  174 (384)
Q Consensus       114 ~~~~~vLDIGtGsG~I~~~La~~~~--~~~v~gvDid~~al~~A~~Ni~~n~~l~---~~I~~~~~  174 (384)
                      .+...++|+|+=-|.....++...+  ..+|+++|.++..++..++|++.|+ +.   .+|.++..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~-~~n~~~~I~~~~~  275 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT-DTNFASRITVHGC  275 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT-TSTTGGGEEEECS
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc-cccccceEEEEEE
Confidence            3556899999988876655555444  4699999999999999999999886 43   34665543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=83.08  E-value=0.89  Score=39.68  Aligned_cols=57  Identities=14%  Similarity=0.061  Sum_probs=44.0

Q ss_pred             eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      .+|=-|.++| |+..++..+  .+++|+.+|.+++.++.+.+.++..+   .++.++..|+.+
T Consensus         4 ValITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvs~   62 (257)
T d2rhca1           4 VALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG---VEADGRTCDVRS   62 (257)
T ss_dssp             EEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTC
T ss_pred             EEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeecCC
Confidence            4466676655 787777665  58999999999999999888887765   368888888753

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.28  E-value=2.5  Score=37.01  Aligned_cols=63  Identities=10%  Similarity=-0.020  Sum_probs=48.6

Q ss_pred             CCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       115 ~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      +.+.+|=.|.++| |+..++..+  .+++|+.+|.+++.++.+.+.++..+.-..++..+..|+.+
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~   68 (272)
T d1xkqa_           4 SNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT   68 (272)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS
T ss_pred             CCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC
Confidence            3457777787766 787777665  58999999999999999988888765233568899998753

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.82  E-value=2.7  Score=36.79  Aligned_cols=62  Identities=15%  Similarity=0.024  Sum_probs=48.5

Q ss_pred             CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734          116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (384)
Q Consensus       116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~  178 (384)
                      .+++|=-|.++| |+..++.++  .+++|+.+|.+++.++.+.+.+...+.-..++..+..|+.+
T Consensus         4 gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~   67 (274)
T d1xhla_           4 GKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE   67 (274)
T ss_dssp             TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC
Confidence            456777787766 777777655  58999999999999999998888776234578999998754