Citrus Sinensis ID: 016739

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEEEcccHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHccccccccccHHHHHHHHHcccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcc
cccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcc
msgilfhkyggedldsyypirpecqadvpkvRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIqrggihpsikGLVWEFLlgcydpnstfeERNQIRQQRRDsldqgwhvdgaiSDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWvdndigyvqgmndICSPMIVLLENEADAFWCFEHTMRRLRENFrtntgmigvQSQLSTLSQIIRTIDPKLHqhledldggEYLFAFRMLMVLFRREFSFVDALYLWELMWAMeynpnifslyesnsstsdgrqvndkqLKQCGkferknvktglpdktsALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
msgilfhkyggedldsyYPIRPECQADVPKVRFKARAGKTLSARRWHaafsedghldIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYesetnqaklwDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKferknvktglpdktsaLSVFLVASVLETknkkllreakglddVVKILADItgnldakkaCNEALKIqkkylskskk
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEAlkiqkkylskskk
***ILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNST***************DQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLY***********************************TSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKI**********
*********************************************WHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQ************************TSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKS**
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYES***********DKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
*SGI*FHKYGGEDLDSYYPIRPECQADVPK*******GKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSK*
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MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
Q9CXF4671 TBC1 domain family member yes no 0.610 0.348 0.376 1e-39
Q8TC07691 TBC1 domain family member yes no 0.610 0.338 0.371 4e-38
Q9UUH7743 GTPase-activating protein yes no 0.644 0.332 0.336 8e-31
Q6FWI1745 GTPase-activating protein yes no 0.825 0.424 0.278 1e-30
P09379730 GTPase-activating protein yes no 0.621 0.326 0.324 2e-29
Q6BU76757 GTPase-activating protein yes no 0.671 0.339 0.296 2e-28
P48365746 GTPase-activating protein yes no 0.723 0.371 0.260 3e-28
Q8BYH7645 TBC1 domain family member no no 0.642 0.381 0.325 4e-27
Q3MII6 688 TBC1 domain family member no no 0.597 0.332 0.296 2e-26
Q9HA65648 TBC1 domain family member no no 0.647 0.382 0.332 4e-26
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function desciption
 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 139/242 (57%), Gaps = 8/242 (3%)

Query: 39  KTLSARRWHAAFSEDGHL-DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQ 97
           + +S   W+ +   +G L  +  + ++I RGG+  S++   W+FLLG +  +ST EER Q
Sbjct: 298 EPVSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQ 357

Query: 98  IRQQRRDS---LDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAK- 153
           +++Q+ D    +   W       +K+  +       I  DV RTDR+  FYE + N    
Sbjct: 358 LQKQKTDEYFRMKLQWKSVSEAQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLI 417

Query: 154 -LWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGM 212
            L D+L  Y   D D+GYVQGM+D+ SP++ ++ENE DAFWCF   M ++ +NF     M
Sbjct: 418 LLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQ--M 475

Query: 213 IGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELM 272
            G+++QL  LS ++R +D     +LE  D G   F FR L++ F+REFSF+D L LWE+M
Sbjct: 476 QGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVM 535

Query: 273 WA 274
           W 
Sbjct: 536 WT 537
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Mus musculus (taxid: 10090)
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|P48365|GYP7_YEAST GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
297744173 486 unnamed protein product [Vitis vinifera] 0.994 0.783 0.707 1e-174
224082860418 predicted protein [Populus trichocarpa] 0.973 0.892 0.702 1e-168
255577934421 conserved hypothetical protein [Ricinus 0.955 0.869 0.688 1e-164
356536848424 PREDICTED: TBC1 domain family member 15- 0.994 0.898 0.674 1e-160
356548075413 PREDICTED: TBC1 domain family member 15- 0.976 0.905 0.676 1e-160
297803220424 RabGAP/TBC domain-containing protein [Ar 0.976 0.882 0.652 1e-157
42567218424 RabGAP/TBC domain-containing protein [Ar 0.976 0.882 0.648 1e-156
42569183425 RabGAP/TBC domain-containing protein [Ar 0.963 0.868 0.642 1e-155
297836794425 RabGAP/TBC domain-containing protein [Ar 0.963 0.868 0.637 1e-151
449463220418 PREDICTED: LOW QUALITY PROTEIN: TBC1 dom 0.932 0.854 0.637 1e-149
>gi|297744173|emb|CBI37143.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/424 (70%), Positives = 340/424 (80%), Gaps = 43/424 (10%)

Query: 3   GILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVL 62
           GIL       ++DS+Y IRPECQ+DVPK+RFK RAGKTLSARRWHAAFS+DGHLDI KVL
Sbjct: 62  GILMKNSANGEVDSFYAIRPECQSDVPKIRFKPRAGKTLSARRWHAAFSQDGHLDIEKVL 121

Query: 63  RRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRR------------------- 103
           RRIQRGG+HPSIKG+VWEFLLGC+DPNSTF+ERN++RQQRR                   
Sbjct: 122 RRIQRGGVHPSIKGVVWEFLLGCFDPNSTFDERNELRQQRRQQYGALKAECQKMAPVIGS 181

Query: 104 ---------------------DSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSL 142
                                  LD G HVD A+ DKKV+QW L LHQIGLDVVRTDR+L
Sbjct: 182 GKFITTPIVTVDATSTPSPLDSPLDDGGHVDDAVPDKKVIQWKLMLHQIGLDVVRTDRTL 241

Query: 143 VFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL 202
           VFYESE NQAKLWDVLA+Y+W+DNDIGY QGMNDICSPM++L+ENEADAFWCFE  MRRL
Sbjct: 242 VFYESEANQAKLWDVLAVYAWMDNDIGYCQGMNDICSPMVILIENEADAFWCFERAMRRL 301

Query: 203 RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSF 262
           RENFR +T  IGVQSQL TLS+II+ +DP+LHQHLEDLDGGEYLFAFRMLMVLFRREFSF
Sbjct: 302 RENFRVSTNSIGVQSQLGTLSEIIKAVDPQLHQHLEDLDGGEYLFAFRMLMVLFRREFSF 361

Query: 263 VDALYLWELMWAMEYNPNIFSLYESNSSTSD---GRQVNDKQLKQCGKFERKNVKTGLPD 319
           VDALYLWELMWAMEYNPNIFS YE +S+++D    +  N K LK+CGKFERKNVKTG  +
Sbjct: 362 VDALYLWELMWAMEYNPNIFSSYEESSASADKSSTQNTNGKMLKKCGKFERKNVKTGYKN 421

Query: 320 KTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLS 379
           + S+L+VFLVASVL TKNK+ L+EAKGLDDVVKIL DITGNLDAKKACNEALK+ KKYLS
Sbjct: 422 QHSSLAVFLVASVLATKNKRFLKEAKGLDDVVKILGDITGNLDAKKACNEALKLHKKYLS 481

Query: 380 KSKK 383
           K+KK
Sbjct: 482 KAKK 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224082860|ref|XP_002306868.1| predicted protein [Populus trichocarpa] gi|222856317|gb|EEE93864.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255577934|ref|XP_002529839.1| conserved hypothetical protein [Ricinus communis] gi|223530667|gb|EEF32540.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356536848|ref|XP_003536945.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356548075|ref|XP_003542429.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|297803220|ref|XP_002869494.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315330|gb|EFH45753.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567218|ref|NP_194584.3| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|119935837|gb|ABM06008.1| At4g28550 [Arabidopsis thaliana] gi|332660104|gb|AEE85504.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42569183|ref|NP_179634.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|238479300|ref|NP_001154525.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251913|gb|AEC07007.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251914|gb|AEC07008.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297836794|ref|XP_002886279.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332119|gb|EFH62538.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449463220|ref|XP_004149332.1| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 15-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
TAIR|locus:2121353424 AT4G28550 [Arabidopsis thalian 0.694 0.627 0.711 2.4e-142
TAIR|locus:2136442436 AT4G27100 [Arabidopsis thalian 0.660 0.580 0.620 4e-123
TAIR|locus:2160145432 AT5G54780 [Arabidopsis thalian 0.660 0.585 0.629 3.2e-121
TAIR|locus:2038922425 AT2G20440 [Arabidopsis thalian 0.812 0.731 0.610 5e-99
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.451 0.232 0.477 3.3e-61
TAIR|locus:2097573 720 AT3G59570 [Arabidopsis thalian 0.451 0.240 0.465 2.7e-59
TAIR|locus:2165710549 AT5G41940 [Arabidopsis thalian 0.315 0.220 0.455 5.8e-45
MGI|MGI:1913937671 Tbc1d15 "TBC1 domain family, m 0.603 0.344 0.380 1.2e-42
UNIPROTKB|F1LPD8670 Tbc1d15 "Protein Tbc1d15" [Rat 0.603 0.344 0.380 1.6e-42
UNIPROTKB|A8K8E1445 TBC1D15 "TBC1 domain family, m 0.603 0.519 0.376 4.6e-42
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1003 (358.1 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
 Identities = 190/267 (71%), Positives = 226/267 (84%)

Query:   105 SLD-QGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSW 163
             S+D Q W V  AI+DK+VLQWML L QIGLDVVRTDR L FYESE+NQA+LWD+L+IY+W
Sbjct:   143 SVDNQEWVVKTAITDKRVLQWMLVLSQIGLDVVRTDRYLCFYESESNQARLWDILSIYTW 202

Query:   164 VDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLS 223
             ++ DIGYVQGMNDICSPMI+LLE+EADAFWCFE  MRRLRENFRT    +GVQ+QL  LS
Sbjct:   203 LNPDIGYVQGMNDICSPMIILLEDEADAFWCFERAMRRLRENFRTTATSMGVQTQLGMLS 262

Query:   224 QIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFS 283
             Q+I+T+DP+LHQHLEDLDGGEYLFA RMLMVLFRREFSF+DALYLWELMWAMEYNPN F+
Sbjct:   263 QVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLFRREFSFLDALYLWELMWAMEYNPNKFA 322

Query:   284 LYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLRE 343
              YE   + ++    + + LKQ GKFERK +K+G  ++ + L+VF+VASVLETKNK+LL+E
Sbjct:   323 SYEEPQNMNNSSGQDPRLLKQYGKFERKYIKSGQNEQHNTLAVFVVASVLETKNKRLLKE 382

Query:   344 AKGLDDVVKILADITGNLDAKKACNEA 370
             AKGLDDVV+IL  I GNLDA+KAC EA
Sbjct:   383 AKGLDDVVQILGGIAGNLDARKACKEA 409
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPD8 Tbc1d15 "Protein Tbc1d15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028558001
SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (439 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 7e-43
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 1e-38
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 8e-34
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  148 bits (376), Expect = 7e-43
 Identities = 66/218 (30%), Positives = 110/218 (50%), Gaps = 20/218 (9%)

Query: 67  RGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDKKVLQWML 126
           R G+ PS++G+VW+ LL          + +  +      L +      A  DK ++    
Sbjct: 2   RKGVPPSLRGVVWKLLLNAQP-----MDTSADKDLYSRLLKET-----APDDKSIV---- 47

Query: 127 GLHQIGLDVVRTDRSLVFYESETN--QAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVL 184
             HQI  D+ RT     F++ +    Q  L  VL  Y+  + ++GY QGMN + +P++++
Sbjct: 48  --HQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLV 105

Query: 185 LENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGE 244
           +E+E DAFWC    M R   NF     M G+Q  L  L ++++  DP L++HL+DL    
Sbjct: 106 MEDEEDAFWCLVKLMERYGPNF-YLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITP 164

Query: 245 YLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIF 282
            L+A R  + LF RE      L +W++++  E +  +F
Sbjct: 165 SLYALRWFLTLFARELPLEIVLRIWDVLF-AEGSDFLF 201

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG1093 725 consensus Predicted protein kinase (contains TBC a 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.97
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.96
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.96
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.95
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.95
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.92
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.85
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.63
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.55
KOG1648813 consensus Uncharacterized conserved protein, conta 99.33
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 98.9
PF149611296 BROMI: Broad-minded protein 97.49
KOG2224781 consensus Uncharacterized conserved protein, conta 87.44
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-44  Score=348.36  Aligned_cols=253  Identities=24%  Similarity=0.399  Sum_probs=210.7

Q ss_pred             HHHHHhhccC-------CCCCHHHHHHHHHhCCCCccchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhhcCCCCCCcc
Q 016739           44 RRWHAAFSED-------GHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAI  116 (383)
Q Consensus        44 ~~W~~~l~~~-------~~~~~~~~lk~l~~~GIP~~~R~~vW~~Llg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  116 (383)
                      .+|.-.+.++       ........+++++|+|||+++|+.||..+.|...........       ..+...+....   
T Consensus       124 ~~~~l~~~~~~~~~~~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g~~~~~~~~~~y-------q~ll~~~~~~~---  193 (436)
T KOG2058|consen  124 LRWELELQSNIKLHSPNDFPPRSDELKRLIRKGIPPELRGEVWWVLSGARRQLNYPGYY-------QELLRKGDEKK---  193 (436)
T ss_pred             HHHHHHhhhhhcccccccccCCcHHHHHHHHcCCChhhhhHHHHHHhcchhhccCchhH-------HHHHhcCCCcc---
Confidence            4677777663       233456669999999999999999999999943322211111       11111111000   


Q ss_pred             chHHHHHHhhhHhHHhhhhccCCCCC-cCCCChhh--HHHHHHHHHHHHHhcCCCCcccChhhHHHHHHhhcCCHHHHHH
Q 016739          117 SDKKVLQWMLGLHQIGLDVVRTDRSL-VFYESETN--QAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFW  193 (383)
Q Consensus       117 ~~~~~~~~~~~~~qI~~Dv~RT~~~~-~~f~~~~~--~~~L~rIL~~y~~~~p~igY~QGm~~I~a~lll~~~~E~~aF~  193 (383)
                              ..+.+||+.|+.||||++ +.|..+..  +++|+|||.||+++||.||||||||.+||++|+++++|++|||
T Consensus       194 --------~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW  265 (436)
T KOG2058|consen  194 --------SPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFW  265 (436)
T ss_pred             --------chHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHH
Confidence                    026689999999999999 78877644  8999999999999999999999999999999999988999999


Q ss_pred             HHHHHHHhhhhcccCCCChHhHHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHHHHhcCcCCChhHHHHHHHHHh
Q 016739          194 CFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMW  273 (383)
Q Consensus       194 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~Wf~tlF~~~l~~~~vlriWD~~l  273 (383)
                      ||+.+++++.|.|+ ..++.|.+.++.+|+.+++..+|+|+.||..++++..+++++||+|+|+..+|.+.++||||++|
T Consensus       266 ~Lv~iie~~lp~Yy-t~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f  344 (436)
T KOG2058|consen  266 MLVALIENYLPRYY-TPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLF  344 (436)
T ss_pred             HHHHHHHHhchhhc-CchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHH
Confidence            99999999998855 78899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCcchhhhcccCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHhhcCChHHHHHH
Q 016739          274 AMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKI  353 (383)
Q Consensus       274 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~~~~il~~~~~~~~~~~~  353 (383)
                      .+|.+                                             +++-+++|++..++++|+. +.+..+++++
T Consensus       345 ~eGsk---------------------------------------------vlfr~Alai~k~~ee~il~-~~~~~~i~~~  378 (436)
T KOG2058|consen  345 YEGSK---------------------------------------------VLFRVALAILKKHEEEILK-EDSSKEILRV  378 (436)
T ss_pred             hcccH---------------------------------------------HHHHHHHHHHHHhHHHHhc-CCCHHHHHHH
Confidence            98865                                             3444889999999999998 5699999999


Q ss_pred             HhcccCCC
Q 016739          354 LADITGNL  361 (383)
Q Consensus       354 ~~~l~~~~  361 (383)
                      +..+...+
T Consensus       379 ~~~~~~~~  386 (436)
T KOG2058|consen  379 LPDLTKRS  386 (436)
T ss_pred             HHHHHHHh
Confidence            98776443

>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 9e-18
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 7e-17
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 9e-13
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 4e-10
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 3e-09
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 4e-09
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 2e-06
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 3e-06
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 35/237 (14%)
Query: 62  LRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDKKV 121
           LR+I   GI    + +VW+ L+G Y P +T  +   ++++R++  D   H       + +
Sbjct: 46  LRQISWNGIPKIHRPVVWKLLIG-YLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDI 104
Query: 122 LQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPM 181
             W    HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P 
Sbjct: 105 PTW----HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPF 160
Query: 182 I----------------------------VLLENEADAFWCFEHTMRRLRENFRTNTGMI 213
                                         + + EAD FWC    + ++ +N+    G  
Sbjct: 161 FETFLTEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQP 218
Query: 214 GVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE 270
           G+  Q+  LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +W+
Sbjct: 219 GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 275
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 6e-69
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 2e-55
2qq8_A334 TBC1 domain family member 14; structural genomics 7e-31
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 3e-28
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 8e-27
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  221 bits (564), Expect = 6e-69
 Identities = 60/277 (21%), Positives = 114/277 (41%), Gaps = 39/277 (14%)

Query: 39  KTLSAR--RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERN 96
            ++  R  ++     +   ++    LR+I   GI    + +VW+ L+G    N+    + 
Sbjct: 2   NSIIQRISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQE 58

Query: 97  QIRQQRRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWD 156
              Q++R                +  + +   HQI +D+ RT+  +  Y+ ++ Q  L  
Sbjct: 59  GFLQRKRKEYRDSLK---HTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQR 115

Query: 157 VLAIYSWVDNDIGYVQGMNDICSPMIVLL----------------------------ENE 188
           +L +++      GYVQG+ND+ +P                                 + E
Sbjct: 116 ILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLE 175

Query: 189 ADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFA 248
           AD FWC    + ++ +N+    G  G+  Q+  LSQ+++ ID  L+ H ++       FA
Sbjct: 176 ADTFWCLTKLLEQITDNYIH--GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFA 233

Query: 249 FRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLY 285
           FR +  L  REF     + +W+   + E +  + S Y
Sbjct: 234 FRWMNCLLMREFQMGTVIRMWDTYLS-ETSQEVTSSY 269
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-51  Score=405.60  Aligned_cols=328  Identities=22%  Similarity=0.382  Sum_probs=237.7

Q ss_pred             cHHHHHHhhccCCCCCHHHHHHHHHhCCCCccchHHHHHHhhCCCCCCCCHHHHHHHHHHHHH---HhhcCCCCCCccch
Q 016739           42 SARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRD---SLDQGWHVDGAISD  118 (383)
Q Consensus        42 ~~~~W~~~l~~~~~~~~~~~lk~l~~~GIP~~~R~~vW~~Llg~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~  118 (383)
                      ..++|.+++.+...++..+ +|.++++|||+.+|+.||+.|+|+.+.+.+.+. ..+.+.+..   +.+..... ...  
T Consensus         7 R~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~-~~l~~~~~~Y~~l~~~~~~~-~~~--   81 (396)
T 1fkm_A            7 RISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQE-GFLQRKRKEYRDSLKHTFSD-QHS--   81 (396)
T ss_dssp             HHHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHH-HHHHHHHHHHHHHHHHTSSS-SCS--
T ss_pred             HHHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHH-HHHHHHHHHHHHHHHHHhhc-cCc--
Confidence            3468999999876577777 667788999999999999999999887654322 122222222   22221110 011  


Q ss_pred             HHHHHHhhhHhHHhhhhccCCCCCcCCCChhhHHHHHHHHHHHHHhcCCCCcccChhhHHHHHHhhcC------------
Q 016739          119 KKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE------------  186 (383)
Q Consensus       119 ~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~I~a~lll~~~------------  186 (383)
                          ...+..+||++||.||+|++++|+.+.+++.|.|||.+|+.+||++|||||||+|++||++++.            
T Consensus        82 ----~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~  157 (396)
T 1fkm_A           82 ----RDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDV  157 (396)
T ss_dssp             ----THHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGT
T ss_pred             ----ccHHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccc
Confidence                1234668999999999999999999999999999999999999999999999999999998752            


Q ss_pred             ------C----------HHHHHHHHHHHHHhhhhcccCCCChHhHHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHH
Q 016739          187 ------N----------EADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFR  250 (383)
Q Consensus       187 ------~----------E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~  250 (383)
                            +          |++|||||+++|+++.++|..  +++++...+..++.+|+..+|+|++||++.|+.+.+|+++
T Consensus       158 ~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~--~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r  235 (396)
T 1fkm_A          158 EIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR  235 (396)
T ss_dssp             TTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred             cccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence                  1          999999999999998777653  4679999999999999999999999999999999999999


Q ss_pred             HHHHhcCcCCChhHHHHHHHHHhhccCCCcchhhhcccCCCCCCcccchhhhhhhc-------------hhhhhhhhcCC
Q 016739          251 MLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCG-------------KFERKNVKTGL  317 (383)
Q Consensus       251 Wf~tlF~~~l~~~~vlriWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~  317 (383)
                      ||+|+|+++||+++++||||.+|++|......+.....+..++++....+....++             +-..++++.++
T Consensus       236 W~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  315 (396)
T 1fkm_A          236 WMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVED  315 (396)
T ss_dssp             HHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------------------------------------------
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999988211100011111111111100000000000             00001111110


Q ss_pred             CC-----CCcchHHHHHHHHHHHHHHHHHhhcCChHHHHHHHhcccCC----CCHHHHHHHHHHHHHHHHhhhc
Q 016739          318 PD-----KTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGN----LDAKKACNEALKIQKKYLSKSK  382 (383)
Q Consensus       318 ~~-----~~~~~~l~~~~ail~~~~~~il~~~~~~~~~~~~~~~l~~~----~d~~~~l~~a~~l~~~y~~~~~  382 (383)
                      .+     +..+|++|+|+|+|...|+.||+.  |++++++++++++..    .|++.++++|..++..|....+
T Consensus       316 ~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~--df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~  387 (396)
T 1fkm_A          316 SGKMRQSSLNEFHVFVCAAFLIKWSDQLMEM--DFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDATS  387 (396)
T ss_dssp             -------CHHHHHHHHHHHHHHHTHHHHTTC--CHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC----
T ss_pred             chhccccchHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccHH
Confidence            00     224689999999999999999974  999999999999964    5999999999999999977654
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 383
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 2e-27
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 1e-17
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (261), Expect = 2e-27
 Identities = 37/190 (19%), Positives = 76/190 (40%), Gaps = 34/190 (17%)

Query: 45  RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRD 104
           ++     +   ++    LR+I   GI    + +VW+ L+G    N+  + +    Q++R 
Sbjct: 9   KFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNT--KRQEGFLQRKRK 65

Query: 105 SLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWV 164
                     +    + +      HQI +D+ RT+  +  Y+ ++ Q  L  +L +++  
Sbjct: 66  EYRDSLKHTFSDQHSRDIPT---WHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIR 122

Query: 165 DNDIGYVQGMNDICSPMI----------------------------VLLENEADAFWCFE 196
               GYVQG+ND+ +P                               + + EAD FWC  
Sbjct: 123 HPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLT 182

Query: 197 HTMRRLRENF 206
             + ++ +N+
Sbjct: 183 KLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.98
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.84
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.1e-32  Score=240.71  Aligned_cols=155  Identities=25%  Similarity=0.488  Sum_probs=124.1

Q ss_pred             HHHHHhhccCCCCCHHHHHHHHHhCCCCccchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhh---cCCCCCCccchHH
Q 016739           44 RRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLD---QGWHVDGAISDKK  120 (383)
Q Consensus        44 ~~W~~~l~~~~~~~~~~~lk~l~~~GIP~~~R~~vW~~Llg~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~  120 (383)
                      .+|.+++.+...++..+ +|.++++|||+.+|+.||+.|+|+++.+.+.++... .++++.+..   ..... ....   
T Consensus         8 ~~~~~~l~~~~~i~~~~-lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~-~~~~---   81 (194)
T d1fkma1           8 SKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFL-QRKRKEYRDSLKHTFSD-QHSR---   81 (194)
T ss_dssp             HHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHH-HHHHHHHHHHHHHTSSS-SCST---
T ss_pred             HHHHHHhcccCCCCHHH-HHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHH-HHHhhhhhhhhhhhhhc-cccc---
Confidence            48999998877788877 567788999999999999999999988876555433 333332221   11111 1111   


Q ss_pred             HHHHhhhHhHHhhhhccCCCCCcCCCChhhHHHHHHHHHHHHHhcCCCCcccChhhHHHHHHhhcC--------------
Q 016739          121 VLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE--------------  186 (383)
Q Consensus       121 ~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~I~a~lll~~~--------------  186 (383)
                         ..+..++|++||.||+|++++|+++.+++.|.|||.+|+.+||++|||||||+|||||++++.              
T Consensus        82 ---~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~  158 (194)
T d1fkma1          82 ---DIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEI  158 (194)
T ss_dssp             ---HHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTT
T ss_pred             ---chHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence               123568999999999999999999999999999999999999999999999999999998762              


Q ss_pred             --------------CHHHHHHHHHHHHHhhhhccc
Q 016739          187 --------------NEADAFWCFEHTMRRLRENFR  207 (383)
Q Consensus       187 --------------~E~~aF~~f~~l~~~~~~~~~  207 (383)
                                    .|+||||||+.+|+++.++|.
T Consensus       159 ~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         159 KDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             SCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             cchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence                          289999999999999887774
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure