Citrus Sinensis ID: 016751
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 383 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SU30 | 413 | F-box protein CPR30 OS=Ar | yes | no | 0.699 | 0.648 | 0.290 | 5e-21 | |
| Q8GXC7 | 427 | F-box/kelch-repeat protei | no | no | 0.702 | 0.629 | 0.267 | 4e-20 | |
| Q9SFC7 | 417 | F-box protein At3g07870 O | no | no | 0.801 | 0.736 | 0.273 | 7e-20 | |
| Q9SUY0 | 402 | F-box protein At4g22390 O | no | no | 0.707 | 0.674 | 0.267 | 5e-17 | |
| Q9SAB5 | 363 | Putative F-box/LRR-repeat | no | no | 0.754 | 0.796 | 0.273 | 3e-15 | |
| Q9LU24 | 360 | Putative F-box protein At | no | no | 0.671 | 0.713 | 0.264 | 1e-14 | |
| Q9SS35 | 389 | Putative F-box protein At | no | no | 0.775 | 0.763 | 0.259 | 2e-14 | |
| Q9LJC0 | 367 | Putative F-box protein At | no | no | 0.710 | 0.741 | 0.264 | 2e-14 | |
| Q9LFW0 | 438 | Putative F-box protein At | no | no | 0.817 | 0.714 | 0.257 | 5e-14 | |
| Q9ZNQ3 | 347 | F-box/LRR-repeat/kelch-re | no | no | 0.537 | 0.593 | 0.262 | 6e-14 |
| >sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 153/327 (46%), Gaps = 59/327 (18%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 85
+P D++ DIFLRL K L R R + K L+ F+E HL++ ++ L+ +
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMI---LLR 60
Query: 86 SYLGFYSTKCKEFEDLCDPPFRTQLAD-LDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKK 144
L YS + + D + +V GS NG++ ++ +D + ++NP ++
Sbjct: 61 GALRLYSVDLDSLDSVSDVEHPMKRGGPTEVFGSSNGLIGLSNSPTD---LAVFNPSTRQ 117
Query: 145 YMTLPRPSLN-PR--------YLGFGVNSVSGHLDDFKVV-TISVNADAE---------- 184
LP S++ P + G G +SVS DD+KVV + D+E
Sbjct: 118 IHRLPPSSIDLPDGSSTRGYVFYGLGYDSVS---DDYKVVRMVQFKIDSEDELGCSFPYE 174
Query: 185 --VYSLRSNSWKNIAYGFPRSIEI----------NRSHINSSVFLNGSVHWC--ARFSCY 230
V+SL+ NSWK I SI++ R + V S+HW R
Sbjct: 175 VKVFSLKKNSWKRIE-SVASSIQLLFYFYYHLLYRRGY---GVLAGNSLHWVLPRRPGLI 230
Query: 231 HDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN--VFDGYLCVFATIPNNTFRSY 288
N LIV FD A E F+ V P ++ + D ++ V DG LC+ N +SY
Sbjct: 231 AFN----LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMC----NYDQSY 282
Query: 289 -ELWVMKEYGLTESWTKLYTIEKPQRI 314
++W+MKEY + +SWTK++T++KP+ +
Sbjct: 283 VDVWMMKEYNVRDSWTKVFTVQKPKSV 309
|
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 146/337 (43%), Gaps = 68/337 (20%)
Query: 23 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG 82
S LP +++ +I LRL K++ R RCV K + TL + F +IHL+ +RN
Sbjct: 33 SLVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRK 92
Query: 83 ISPSYLGFYSTKCKEFED-------------LCDPP------FRTQLAD----------- 112
+ S YS D L D P R + D
Sbjct: 93 LIVSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLK 152
Query: 113 ----------LDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLP---RPSL------ 153
+++VGS NG++C ++L+NP LP RP
Sbjct: 153 LNAKSYRRNWVEIVGSSNGLVCISPG---EGAVFLYNPTTGDSKRLPENFRPKSVEYERD 209
Query: 154 NPRYLGFGVNSVSGHLDDFKVVTISVNA----DAEVYSLRSNSWKNIAYGFPRSIEINRS 209
N + GFG + G DD+K+V + + DA VYSL+++SW+ I + E N
Sbjct: 210 NFQTYGFGFD---GLTDDYKLVKLVATSEDILDASVYSLKADSWRRIC---NLNYEHNDG 263
Query: 210 HINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV 269
S V NG++HW S ++ ++V+FD E F+ + +P D + D + ++ N
Sbjct: 264 SYTSGVHFNGAIHWVFTESRHNQR----VVVAFDIQTEEFREMPVP-DEAEDCSHRFSNF 318
Query: 270 FDGYLCVFATIPNNTFRSYE-LWVMKEYGLTESWTKL 305
G L + N+ + ++ +WVM EYG +SW+++
Sbjct: 319 VVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRI 355
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 162/388 (41%), Gaps = 81/388 (20%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNP-RPLLFRHGIS 84
LPED++ DIF RL + ++ARL VC+SW ++LT L+ S +P +P L H S
Sbjct: 28 LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHG----RLSSSSSSPTKPCLLLHCDS 83
Query: 85 PSYLGFYSTKCKEFEDLCDPP-----FRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWN 139
P G + E E F + + + DVVGSCNG+LC + + SL YL+N
Sbjct: 84 PIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSL-YLYN 142
Query: 140 PLIKKYMTLPRPS----LNPRYLGFGVNSVSGHLDDFKVVTIS----------------- 178
P + LP S GFG + ++ K+V
Sbjct: 143 PFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQ 202
Query: 179 -VNADAEVYSLRSN------SWKNIA---YGFPRSIEINRSHINSSVFLNGSVHWCARFS 228
++ ++ +L S SW+++ Y F + RS S +NG +H+ R
Sbjct: 203 YKQSEVQILTLSSKTTDQSLSWRSLGKAPYKF-----VKRS---SEALVNGRLHFVTRPR 254
Query: 229 CYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSY 288
+ + VSFD E F+ + P + + L G LC A + N +
Sbjct: 255 RHVPDR---KFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLC--AVVYGN-YGKL 308
Query: 289 ELWVMKEYGLTESWTKLYTI------------EKPQRIWWP---------LGFTERGKIF 327
++WVMK YG+ ESW K Y+I ++P IW L E G+I
Sbjct: 309 DIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEIL 368
Query: 328 IRGECRHGGYGLLVYNPHSDTFKCIGVH 355
+ + R L+ Y+P FK + H
Sbjct: 369 LEYKSR----VLVAYDPKLGKFKDLLFH 392
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 141/318 (44%), Gaps = 47/318 (14%)
Query: 27 PEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPS 86
P D++ ++FLRL L + R + K +L+ S FV HL + + L+ P
Sbjct: 5 PTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLR-GPR 63
Query: 87 YLGFYSTKCKEFEDLCDPPFRTQLADL-DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKY 145
L + + E++ D P Q +V GS NGV+ C++ D + ++NP +K
Sbjct: 64 LL--RTVELDSPENVSDIPHPLQAGGFTEVFGSFNGVIGLCNSPVD---LAIFNPSTRKI 118
Query: 146 MTLPRPSLN-PR--------YLGFGVNSVSGHLDDFKVVTI------------SVNADAE 184
LP ++ P + G G +SV DDFKVV I + +
Sbjct: 119 HRLPIEPIDFPERDITREYVFYGLGYDSVG---DDFKVVRIVQCKLKEGKKKFPCPVEVK 175
Query: 185 VYSLRSNSWKNIAYGFPRSIEINRSHIN------SSVFLNGSVHWC--ARFSCYHDNSCP 236
V+SL+ NSWK + F I + + V +N +HW R N+
Sbjct: 176 VFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNA-- 233
Query: 237 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEY 296
I+ +D A + + P +L +D + + V DG +C+ + + ++WV+KEY
Sbjct: 234 --IIKYDLASDDIGVLSFPQELYIED-NMDIGVLDGCVCLMCY---DEYSHVDVWVLKEY 287
Query: 297 GLTESWTKLYTIEKPQRI 314
+SWTKLY + KP+ +
Sbjct: 288 EDYKSWTKLYRVPKPESV 305
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAB5|FBLK2_ARATH Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana GN=At1g11620 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 160/347 (46%), Gaps = 58/347 (16%)
Query: 22 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQ-SMRNPRPLLF- 79
++ L D++ +I R+ ++L RLR CK W L+ FV HL+ R + +F
Sbjct: 2 ATMDLSSDLVEEILSRVPARSLVRLRSTCKQWEALIAEPRFVNKHLSHMRYREQQFTVFN 61
Query: 80 -RHGISPSYLGFYSTKCKEFEDLCDP-------PFRTQLADLDVVGSCNGVLCFCSNGSD 131
H +SP F ST D P PF L+ + C+G+L + +
Sbjct: 62 NEHIVSPL---FGSTTSYVGIDFNKPENCGVKLPFPIALSPAINISHCDGLLLYVT---- 114
Query: 132 RSLIYLWNPLI--KKYMTLPRP---SLNPRYLGFGVNSVSGHLDDFKVV----TISVNAD 182
+S++ + NPL+ K+++ S++ LG+ N SG D+KVV I ++
Sbjct: 115 KSMLLVANPLLSQKRWIKCSEGFDHSMDAYGLGYLFNQSSGFY-DYKVVRFRCGIKNSSR 173
Query: 183 AEVYSLRSNSWKNIAYGFPRSIEINRSHIN----SSVFLNGSVHWCARFSCYHDNSCPWL 238
EVY+ +S+SWK + ++ N + SSV L G+ +W Y+ + +
Sbjct: 174 VEVYAFKSDSWKVV-------VDTNFGGFDGLPLSSVCLRGTPYWLG----YNKSGNELM 222
Query: 239 -IVSFDFAKEIFQTVMM-PYDLSTDDADKY--LNVFDGYLCVFATIPNNTFRSYELWVMK 294
I SFDF+KE F+ + + P + + + KY L +F G + T + + LWVMK
Sbjct: 223 SIQSFDFSKERFEPLFLPPQSIGSRNLVKYISLGIFRGDQLSLLLECHETCKLH-LWVMK 281
Query: 295 EYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLV 341
+ + W++L T++ PQ + GK F R+G LL+
Sbjct: 282 K----QHWSRLMTVDVPQDAIY-------GKYFSSFIERNGRLALLI 317
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 131/291 (45%), Gaps = 34/291 (11%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 85
LPE++ I+I +RL +K+LAR RCVCK+W L+ F E + R+ P F
Sbjct: 5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETY-----RDMSPAKFVSFYDK 59
Query: 86 S-YLGFYSTKCKEFEDLCDPPFRTQLADLDV-VGSCNGVLCFCSNGSDRSLIYLWNPLIK 143
+ Y+ K + D P + D V C+G LC + +WNP K
Sbjct: 60 NFYMLDVEGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVTLKN---HTLMVWNPFSK 116
Query: 144 KYMTLPRPSL--NPRYLGFGVNSVSGHLDDFKVVTISVNAD---AEVYSLRSNSW-KNIA 197
++ +P P + + LGFG + V DD+KVVT D A V+ R+ SW +++
Sbjct: 117 QFKIVPNPGIYQDSNILGFGYDPVH---DDYKVVTFIDRLDVSTAHVFEFRTGSWGESLR 173
Query: 198 YGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYD 257
+P +R FL+ ++W A + +S I+ F+ + ++ + +P
Sbjct: 174 ISYPDWHYRDR----RGTFLDQYLYWIA-----YRSSADRFILCFNLSTHEYRKLPLPV- 223
Query: 258 LSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI 308
+ +L V LC+ T + + VM++ G SW+K+ ++
Sbjct: 224 YNQGVTSSWLGVTSQKLCI--TEYEMCKKEIRISVMEKTG---SWSKIISL 269
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS35|FB137_ARATH Putative F-box protein At3g10240 OS=Arabidopsis thaliana GN=At3g10240 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 153/351 (43%), Gaps = 54/351 (15%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLL------- 78
+P D++ +I LRL K++AR RCV K W+++ T F+ + + R+PR LL
Sbjct: 27 IPLDLVSEILLRLPEKSVARFRCVSKPWSSITTEPYFINL---LTTRSPRLLLCFKANEK 83
Query: 79 FRHGISPSYLGFYST--KCKEFEDLCDP---PFRTQLADLDVVGSCNGVLCFCSNGSDRS 133
F P + + T K + L D F ++ S NG++CF + +
Sbjct: 84 FFVSSIPQHRQTFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTESVNGLICF----QESA 139
Query: 134 LIYLWNPLIKKYMTLPRPSLNPRYLG--FGVNSVSGHLDDFKVVTISVNADAE---VYSL 188
+ +WNP ++ + LP+P+ N L G + V G KV+ + +A + V +L
Sbjct: 140 RLIVWNPSTRQLLILPKPNGNSNDLTIFLGYDPVEG---KHKVMCMEFSATYDTCRVLTL 196
Query: 189 RSNSWKNIAYGFPRSIEINRSH----INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDF 244
S A R+++ + H +S +NG V+ A Y + C W+++SFD
Sbjct: 197 GS------AQKLWRTVKTHNKHRSDYYDSGRCINGVVYHIA----YVKDMCVWVLMSFDV 246
Query: 245 AKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFA--TIPNNTFRSYELWVMKEYGLTES- 301
EIF + +P S+D L ++G L I N R LW+++++ S
Sbjct: 247 RSEIFDMIELP---SSDVHKDVLIDYNGRLACVGREIIEKNGIR---LWILEKHNKWSSK 300
Query: 302 --WTKLYTIEK--PQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348
L I+K + GFT G+I H + Y+P +T
Sbjct: 301 DFLAPLVHIDKSLSTNKFLLKGFTHAGEIIYVESMFHKSAKIFFYDPVRNT 351
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJC0|FB170_ARATH Putative F-box protein At3g21120 OS=Arabidopsis thaliana GN=At3g21120 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 31/303 (10%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLL-----FR 80
LPED++++I ++ +LAR R C+ WN L+ +F + H R P++ FR
Sbjct: 3 LPEDLVLEILSKVPAVSLARFRSTCRRWNALVVDGSFAKKHYAYGPRQ-YPIVIMLIEFR 61
Query: 81 --------HGISPSYLGFYSTKCKEFEDLCDP-PFRTQLADLDVVGSCNGVLCFCSNGSD 131
HGI+ + G S K L DP ++ D+ C+G+L C+ D
Sbjct: 62 VYLVSIDLHGINNNN-GAPSAKLTGQFSLKDPLSNSSEEVDIRNAFHCDGLLLCCTK--D 118
Query: 132 RSLIYLWNPLIKKYMTL-PRPSLNPR---YLGFGVNSVSGHLDDFKVVTISVNADAEVYS 187
R L+ +WNP + + PR S LG+ S S + V + ++EVY
Sbjct: 119 RRLV-VWNPCSGETKWIQPRNSYKESDLYALGYDNRSSSYKILRMHPVGNPFHIESEVYD 177
Query: 188 LRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE 247
S+SW+++ I+ N S+ + + G+ +W A + + ++SFDF++E
Sbjct: 178 FASHSWRSVGVTTDFHIQTNESY---GMNVKGTTYWFALSKDWWSSDDRRFLLSFDFSRE 234
Query: 248 IFQTVMMPYDLSTDDADKYLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTE---SW 302
FQ + +P D+ L+V + LC+FAT+ +++V + T +W
Sbjct: 235 RFQCLPLPADVKNLHLTVVLSVTREEQQLCMFATLGAGNVYKLDVFVATKTEETTGELTW 294
Query: 303 TKL 305
TK
Sbjct: 295 TKF 297
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFW0|FB257_ARATH Putative F-box protein At5g15660 OS=Arabidopsis thaliana GN=At5g15660 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 155/357 (43%), Gaps = 44/357 (12%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLL-----FR 80
+P D++I+I RL +K++AR V K W T + S F + + S PR L+ F+
Sbjct: 28 IPHDLVIEILERLPLKSVARFLTVSKLWATTIRSPDFRKSYRGGSSSEPRTLIVSDLNFK 87
Query: 81 HGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNP 140
+ S F PF + NG++ G+D+ +I NP
Sbjct: 88 EPNPKLHFFRPSISSPSFLSSLTCPFTYPRHEEYYYHHVNGLIS-VGYGTDQIVI---NP 143
Query: 141 LIKKYMTLPRPSLNPRYL--GFGVNSVSGHLDDFKVVTIS---------VNADAEVYSL- 188
K++TLPRP + + FG +SVS D +KV+ ++ ++ +VY+L
Sbjct: 144 TTGKFITLPRPKTRRKLVISFFGYDSVS---DQYKVLCMTERLRGHPEEASSQHQVYTLG 200
Query: 189 -RSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE 247
+ SWK I P +R ++V +NG V++ A+ C ++ FD +
Sbjct: 201 AKQKSWKMINCSIP-----HRPWSWNAVCINGVVYYIAKTGEGMFRRC---LMRFDLKSD 252
Query: 248 IFQT-VMMPYDLSTDDADKYLNVFDGYLCVFATIPNN-TFRSYELWVMKEYGLTESWTKL 305
++P ++ T D +L + G + IPN F +Y++WVM + G W K
Sbjct: 253 NLDLCTILPEEIQTSLHDYFLINYKGKVA----IPNQPNFYTYDVWVMNQEGGKIEWLKN 308
Query: 306 YTIE-KPQ----RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLP 357
T KP+ R + G T G+ + + + YNP ++F+ I V P
Sbjct: 309 ITFTIKPRKGFVRYLFVTGTTHTGEFILAPTSYTDEFYVFHYNPDMNSFRKIRVQAP 365
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZNQ3|FBLK3_ARATH F-box/LRR-repeat/kelch-repeat protein At2g27520 OS=Arabidopsis thaliana GN=At2g27520 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 85
LP D++ +I RL +L RLR CK WN L F+ +++ + L+
Sbjct: 6 LPWDLVDEILSRLPATSLGRLRFTCKRWNALFKDPEFITKQFHKAAKQDLVLML------ 59
Query: 86 SYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKY 145
S G YS +L + P ++A V CNG+L + +++ + + NP +
Sbjct: 60 SNFGVYSMST----NLKEIPNNIEIAQ---VFHCNGLLLCSTEEGNKTKLVVVNPCTGQT 112
Query: 146 MTL-PRPSLNPRY---LGFGVNSVSGHLDDFKVVTISVNAD-AEVYSLRSNSWKNIAYGF 200
+ PR N + LG+G NS D +K++ I+ E++ L+SNSW+ ++
Sbjct: 113 RWIEPRTDYNYNHDIALGYGNNSTKKSYDSYKILRITYGCKLVEIFELKSNSWRVLSKVH 172
Query: 201 PRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPY 256
P H V G+ +W + ++ ++ I+SFDF E F++V +P+
Sbjct: 173 PNV----EKHYYGGVSFKGNTYWLS-YTKFN-------ILSFDFTTETFRSVPLPF 216
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 383 | ||||||
| 296090345 | 423 | unnamed protein product [Vitis vinifera] | 0.853 | 0.773 | 0.340 | 5e-40 | |
| 356555602 | 405 | PREDICTED: F-box/kelch-repeat protein At | 0.864 | 0.817 | 0.294 | 8e-32 | |
| 359806236 | 406 | uncharacterized protein LOC100815072 [Gl | 0.864 | 0.815 | 0.293 | 2e-30 | |
| 147785389 | 485 | hypothetical protein VITISV_041940 [Viti | 0.864 | 0.682 | 0.280 | 2e-29 | |
| 357456321 | 413 | F-box/kelch-repeat protein [Medicago tru | 0.707 | 0.656 | 0.331 | 4e-29 | |
| 357447615 | 366 | F-box/kelch-repeat protein [Medicago tru | 0.864 | 0.904 | 0.279 | 6e-29 | |
| 297739282 | 423 | unnamed protein product [Vitis vinifera] | 0.864 | 0.782 | 0.277 | 1e-28 | |
| 449444949 | 379 | PREDICTED: F-box protein CPR30-like [Cuc | 0.856 | 0.865 | 0.310 | 1e-28 | |
| 357457861 | 380 | F-box/kelch-repeat protein [Medicago tru | 0.848 | 0.855 | 0.286 | 2e-28 | |
| 357472483 | 378 | F-box/kelch-repeat protein [Medicago tru | 0.840 | 0.851 | 0.312 | 9e-28 |
| >gi|296090345|emb|CBI40164.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 199/364 (54%), Gaps = 37/364 (10%)
Query: 31 MIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRP-LLFRHGISPSYLG 89
+IDI LRL VK++ R RCVCKSW TL F+ +HL Q+ N LLF+H +S S
Sbjct: 25 LIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRLLFKH-LSSSEQE 83
Query: 90 FYSTKCK-EFEDL--CDPPFRTQLADLDVVGSCNGVLCFCSN---GSDRSL-IYLWNPLI 142
YS + F ++ + P ++ +VGS NG++C + GS SL ++LWNP I
Sbjct: 84 IYSLRSNIAFAEVRRLEVPVPSKTDYYQIVGSSNGLICLTESNFKGSYLSLNLFLWNPAI 143
Query: 143 KKYMTLPRPSLNPRY-------LGFGVNSVSGHLDDFKVVTI-----SVNADAEVYSLRS 190
+++ TLP+ +N LGF + V ++D+KVV I + ++A+VYSLR+
Sbjct: 144 REFQTLPKYHINNFTSPLMVVGLGFAFHPV---INDYKVVRIVYFMRNKTSEADVYSLRT 200
Query: 191 NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ 250
SW+ + I N S F+NG++HW A DN+ LI+SFD AK++F+
Sbjct: 201 GSWRKVDANICCYIHSNVSR----TFINGALHWLAGKKNEMDNTDN-LILSFDMAKDVFK 255
Query: 251 TVMMPYDLSTDD-ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 309
+M+P D D+ K L + G L V ++ + ++WVM+EYG+ +SWTK +TI
Sbjct: 256 EIMLP-DFGYDELIRKCLADYKGSLSVLFYDAYHSNENCDVWVMEEYGVAKSWTKHFTIR 314
Query: 310 KPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVES 369
I P F + G+ ++ + + GG+ + +NP F+ +GV P +++ ++ES
Sbjct: 315 HEIEIIIPFEFFDNGEAILQKK-KSGGF--ISWNPDGIRFRDLGVSGP---ARLVEYMES 368
Query: 370 IIEP 373
++ P
Sbjct: 369 LVSP 372
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555602|ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 179/377 (47%), Gaps = 46/377 (12%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 85
LP++++++I RL VK+L + RCVCKSW +L+ F++ HL+ S R+ R +S
Sbjct: 49 LPDELVVEILSRLPVKSLLQFRCVCKSWMSLIYDPYFMKKHLHLSSRSTHFTHHRIILSA 108
Query: 86 SYLGFYSTKC------KEFEDLCDP---PFRTQLADLDVVGSCNGVLCFCSNGSDRSLIY 136
+ F+ C +CD P + + +VGSCNG+LCF G +
Sbjct: 109 TTAEFHLKSCSLSSLFNNLSTVCDELNYPVKNKFRHDGIVGSCNGLLCFAIKG---DCVL 165
Query: 137 LWNPLIKKYMTLPRPSLNPR-----YLGFGVNSVSGHLDDFKVVTI-------SVNADAE 184
LWNP I+ P N R G G + V+ +D+KVV + + +
Sbjct: 166 LWNPSIRVSKKSPPLGNNWRPGCFTAFGLGYDHVN---EDYKVVAVFCDPSEYFIECKVK 222
Query: 185 VYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDF 244
VYS+ +NSW+ I FP + NS F++G+++W A S +S W+IVS D
Sbjct: 223 VYSMATNSWRKIQ-DFPHGFSPFQ---NSGKFVSGTLNWAANHSI--GSSSLWVIVSLDL 276
Query: 245 AKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTK 304
KE ++ V+ P D + L V G LC+ F +W+MK+YG ESW K
Sbjct: 277 HKETYREVLPPDYEKEDCSTPGLGVLQGCLCMNYDYKKTHFV---VWMMKDYGARESWVK 333
Query: 305 LYTI---EKPQRIWW--PLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYY 359
L +I P+ + P +E G++ + E + L++YNP ++FK +
Sbjct: 334 LVSIPYVPNPENFSYSGPYYISENGEVLLMFE-----FDLILYNPRDNSFKYPKIESGKG 388
Query: 360 AIQVLNFVESIIEPVSQ 376
+VE+++ P+
Sbjct: 389 WFDAEVYVETLVSPMKH 405
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806236|ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycine max] gi|255637050|gb|ACU18857.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 179/378 (47%), Gaps = 47/378 (12%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 85
LP++++++I RL VK+L + RCVCKSW +L++ F++ HL+ S R R +S
Sbjct: 49 LPDELVVEILSRLPVKSLLQFRCVCKSWMSLISDPYFMKKHLHLSSRCTHFTHHRIILSA 108
Query: 86 SYLGFYSTKC-------KEFEDLCDP---PFRTQLADLDVVGSCNGVLCFCSNGSDRSLI 135
+ F+ C +CD P + + +VGSCNG+LCF G +
Sbjct: 109 TTAEFHLKSCSLSSLFNNPSSTVCDDLNYPVKNKFRHDGIVGSCNGLLCFAIKG---DCV 165
Query: 136 YLWNPLIKKYMTLPRPSLNPR-----YLGFGVNSVSGHLDDFKVVTI-------SVNADA 183
LWNP I+ P N R G G + V+ +D+KVV + +
Sbjct: 166 LLWNPSIRVSKKSPPLGNNWRPGCFTAFGLGYDHVN---EDYKVVAVFCDPSEYFIECKV 222
Query: 184 EVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFD 243
+VYS+ +NSW+ I FP NS F++G+++W A S S W+IVS D
Sbjct: 223 KVYSMATNSWRKIQ-DFPHGF---LPFQNSGKFVSGTLNWAANHSI--GPSSFWVIVSLD 276
Query: 244 FAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWT 303
KE ++ V+ P D + L V G LC+ F +W+MK+YG+ ESW
Sbjct: 277 LHKETYREVLPPDYEKEDCSTPSLGVLQGCLCMNYDYKKTHFV---VWMMKDYGVRESWV 333
Query: 304 KLYTI---EKPQRIWW--PLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPY 358
KL +I P+ + P +E GK+ + E + L++Y+P +++FK +
Sbjct: 334 KLVSIPYVPNPEDFSYSGPYYISENGKVLLMFE-----FDLILYDPRNNSFKYPKIESGK 388
Query: 359 YAIQVLNFVESIIEPVSQ 376
+VE+++ P+
Sbjct: 389 GWFDAEVYVETLVSPMKH 406
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147785389|emb|CAN68677.1| hypothetical protein VITISV_041940 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 186/378 (49%), Gaps = 47/378 (12%)
Query: 23 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG 82
+F L E+ ++D+ LRL VK++ R +CVC+SW TL F+ +HL +++ + +
Sbjct: 81 NFILSEN-LVDVLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMHLRRAITHNNCCMLLKY 139
Query: 83 ISPSYLGFYSTKC-KEFEDL--CDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLI---- 135
+S S YS +C K+F + P ++ +VGS NG++C + + S +
Sbjct: 140 LSSSEEEVYSLRCDKDFAEFRRLQVPVPSKTDYYHIVGSSNGLICLTESNNKGSYVTVDT 199
Query: 136 YLWNP-LIKKYMTLPRPSLNPRY--------LGFGVNSVSGHLDDFKVVTI-----SVNA 181
+LWNP + ++ LP+ +N LGF + +DD+KVV I S
Sbjct: 200 FLWNPSVTAQWKPLPKYLINNMMTSPFMVVGLGFAFHP---QIDDYKVVRIVYFLKSKTY 256
Query: 182 DAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSV---FLNGSVHWCARFSCYHDNSCPWL 238
+ VYSL+ ++WKNI HI+ +V F+NG++HW A L
Sbjct: 257 EVHVYSLKQDAWKNIDAKV-------HCHIHDTVSRTFVNGALHWLAAKKNQGRGKSDDL 309
Query: 239 IVSFDFAKEIFQTVMMP---YDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 295
I+SFD ++ + +++P YD S+ K L + G L V + + ++WVM E
Sbjct: 310 ILSFDMVEDNLREMILPEFGYDESS--TQKCLADYKGLLSVLVYNAHRCNDNCDIWVMDE 367
Query: 296 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH 355
YG+ SWTK +T I L F + G++ ++ ++G GL+ +P+ + + V
Sbjct: 368 YGVASSWTKRFTFCLDVEILILLDFLDNGEVVVQN--KNG--GLVACDPNGGKIRDLKVA 423
Query: 356 LPYYAIQVLNFVESIIEP 373
P ++ ++E+++ P
Sbjct: 424 GPACLVK---YIETLVSP 438
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357456321|ref|XP_003598441.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355487489|gb|AES68692.1| F-box/kelch-repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 151/326 (46%), Gaps = 55/326 (16%)
Query: 23 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQS-MRNPRPLLFRH 81
S LP DV+ +I RL VK + + RCVCKSWN+L++ FV+ LN S RN LL+ H
Sbjct: 41 STTLPSDVIPEILCRLPVKFILQFRCVCKSWNSLISDPKFVKKQLNVSTARNIHFLLYDH 100
Query: 82 GISPSYLGFYSTKCKE----FEDLCDPPFRTQLAD------------LDVVGSCNGVLCF 125
YLG Y + F ++ R + + D VGSCNG+LC
Sbjct: 101 ---TRYLGKYILLSEPIDSIFTNITSNSTRFEYSPNGFNGDYPRSILHDFVGSCNGILCI 157
Query: 126 CSNGSDRSLIYLWNPLIKKYMTLP---RPSLNPRY---LGFGVNSVSGHLDDFKVVTI-- 177
+ + L+ LWNP I+K+ LP +P + GFG NS D++KVV +
Sbjct: 158 ADDY--KGLVILWNPSIRKFKELPLFQKPYVRNHIHMSFGFGYNSSK---DNYKVVVVLV 212
Query: 178 ---------SVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFS 228
+ + EV++L +N W+ +P S F++G+++W
Sbjct: 213 YFIYRDIKTDIKTEVEVHTLGTNFWRRSTQEYPLG---GAPFERSGKFVSGTINWLFSKK 269
Query: 229 CYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDAD-KYLNVFDGYLCVFATIPNNTFRS 287
CP IVSFD AKE FQ + P D D L V LCV +
Sbjct: 270 IKSGRVCPCFIVSFDLAKETFQKISPPSIGGIDVCDLSSLGVLRDCLCVTS--------G 321
Query: 288 YELWVMKEYGLTESWTKLYTIE-KPQ 312
++W+MKEY ESWTKL TI KP+
Sbjct: 322 DDIWIMKEYAKQESWTKLLTIPYKPE 347
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447615|ref|XP_003594083.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355483131|gb|AES64334.1| F-box/kelch-repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 184/379 (48%), Gaps = 48/379 (12%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGI-- 83
LPE+++++I ++L +K+L R RCVCKSW ++++ F++ L+ S +N H I
Sbjct: 8 LPEELILEILIKLPIKSLLRFRCVCKSWLHIISNPYFIKKQLHFSTQNTH-FTTNHRIIL 66
Query: 84 SPSYLGFYSTKC---------KEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSL 134
S + F+ C D + P + + +VGSCNG+LCF G
Sbjct: 67 SATTAEFHLKSCSITSLFNNPSTVSDDLNYPVKNKFRHDGIVGSCNGLLCFAIKG---DC 123
Query: 135 IYLWNPLIKKYMTLPRPSLNPRY-----LGFGVNSVSGHLDDFKVVTISVNAD------- 182
+ LWNP I+ P N R G G + V+ DD+KVV + + +
Sbjct: 124 VLLWNPSIRVSKKSPPLGNNWRPGCFTCFGLGYDHVN---DDYKVVAVFCDPNEFFSESK 180
Query: 183 AEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSF 242
+VYS+ +N+W+ I + FP + ++ +S F++G+++W + +S +S W IVS
Sbjct: 181 VKVYSMATNTWRKI-HDFPHGVSPYQN--SSGKFVSGTLNWASNYSI--GSSSFWTIVSL 235
Query: 243 DFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESW 302
D KE ++ V+ P + + L+V G LC+ F +W+MK+YG+ ESW
Sbjct: 236 DLEKETYREVLPPDYEKEECSTPSLSVLKGCLCMNYDYKKTDFV---VWLMKDYGVRESW 292
Query: 303 TKLYTI---EKPQRIWW--PLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLP 357
KL TI P+ + P +E G++ + E + L++Y+P +F+ +
Sbjct: 293 IKLLTIPYLPNPEDFSYSGPYCISENGEVLLMFE-----FDLILYDPRDHSFRYPRIEGG 347
Query: 358 YYAIQVLNFVESIIEPVSQ 376
+VES++ P+
Sbjct: 348 KGWFDAEVYVESLVSPMKD 366
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739282|emb|CBI28933.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 186/378 (49%), Gaps = 47/378 (12%)
Query: 23 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG 82
+F L E+ ++D+ LRL VK++ R +CVC+SW TL F+ ++L +++ + +
Sbjct: 19 NFILSEN-LVDVLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMNLRRAITHNNCCMLLKY 77
Query: 83 ISPSYLGFYSTKC-KEFEDL--CDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLI---- 135
+S S YS +C K+F + P ++ +VGS NG++C + + S +
Sbjct: 78 LSSSEEEVYSLRCDKDFAEFRRLQVPVPSKTDYYHIVGSSNGLICLTESNNKGSYVTVDT 137
Query: 136 YLWNP-LIKKYMTLPRPSLNPRY--------LGFGVNSVSGHLDDFKVVTI-----SVNA 181
+LWNP + ++ LP+ +N LGF + +DD+KVV I S
Sbjct: 138 FLWNPSVTAQWKPLPKYLINNMMTSPFMVVGLGFAFHP---QIDDYKVVRIVYFLKSKTY 194
Query: 182 DAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSV---FLNGSVHWCARFSCYHDNSCPWL 238
+ VYSL+ ++WKNI HI+ +V F+NG++HW A L
Sbjct: 195 EVHVYSLKQDAWKNIDAKV-------HCHIHDTVSRTFVNGALHWLAAKKNQGRGKSDDL 247
Query: 239 IVSFDFAKEIFQTVMMP---YDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 295
I+SFD ++ + +++P YD S+ K L + G L V + + ++WVM E
Sbjct: 248 ILSFDMVEDNLREMILPEFGYDESS--TQKCLADYKGLLSVLVYNAHRCNDNCDIWVMDE 305
Query: 296 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH 355
YG+ SWTK +T I L F + G++ ++ ++G GL+ +P+ + + V
Sbjct: 306 YGVASSWTKRFTFCLDVEILILLDFLDNGEVVVQN--KNG--GLVACDPNGGKIRDLKVA 361
Query: 356 LPYYAIQVLNFVESIIEP 373
P ++ ++E+++ P
Sbjct: 362 GPACLVK---YIETLVSP 376
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444949|ref|XP_004140236.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] gi|449531147|ref|XP_004172549.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 174/374 (46%), Gaps = 46/374 (12%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLF------ 79
LP +V+ +IFL L K L CV KSW +++ + F+ H NQS+ R LL
Sbjct: 5 LPHEVLFNIFLNLPPKTLILCSCVSKSWRSVVANPIFISTHRNQSLTCNRKLLILGRYYY 64
Query: 80 -RHGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLW 138
R Y + T + PF DL +VG NG++CF G D + LW
Sbjct: 65 NRTEPKVRYSLHFDTDTLDLYQELKFPFPNSNGDLKIVGVSNGLVCFL--GLD---LLLW 119
Query: 139 NPLIKKYMTLPRPSLN------PRY--LGFGVNSVSGHLDDFKVVTISVNAD-------- 182
NP I++ + +PR S P + LGFG +S + DD KVV + AD
Sbjct: 120 NPSIQRVVDVPRTSDTVTTYGVPDFYALGFGFDSCA---DDHKVVRLLYFADKVPFSYKR 176
Query: 183 ---AEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLI 239
E+Y + + SW+ I PR EI RS + F+NG+VHW A C I
Sbjct: 177 SPKVELYEVGTGSWRAINNKAPRC-EIVRSGW-TQAFVNGAVHWIAYREIGTGYRC--FI 232
Query: 240 VSFDFAKEIFQTVMMPYDLSTDDA-DKYLNVFDGYLCVFATIPNNTFRSY--ELWVMKEY 296
+ FD KE F + +P L+ D + V G L + F +Y +WV+K+Y
Sbjct: 233 LRFDIVKECFSIITLPDCLANSSPYDLKVTVLGGALSI-TLCGWYCFETYMSSVWVLKKY 291
Query: 297 GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHL 356
+ ESWTKL + Q + LG E G++ + E + G +++YNP+ K +G++
Sbjct: 292 DIPESWTKLISSGPSQELGMVLGLRENGEMLM--ESKSG--EVVLYNPYIRLMKNLGIYG 347
Query: 357 PYYAIQVLNFVESI 370
+ ++VES+
Sbjct: 348 AEGTFYLDSYVESL 361
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357457861|ref|XP_003599211.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355488259|gb|AES69462.1| F-box/kelch-repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 181/367 (49%), Gaps = 42/367 (11%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 85
LP DV+ +I RL +K L +LRC+CKS+N+L++ F + HL S + +L I+
Sbjct: 37 LPFDVLPEILCRLPMKLLGQLRCLCKSFNSLISDPKFAKKHLQLSTKRHHLMLTCLSITS 96
Query: 86 SYL-------GFYSTKCKEFEDLCDPP--FRTQLADLDVVGSCNGVLCFCSNGSDRSLIY 136
+L ST + PP R + +D+ SC+G+ FC + +
Sbjct: 97 EWLLYESPISSILSTSTVFTQTQLYPPNSIRIRRNYVDLTCSCDGI--FCGELNLLGCYF 154
Query: 137 LWNPLIKKYMTLPRPSLN-----PRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN 191
LWNP I+K+ LP PS N P ++ FG + +D++K++++S + VY+L ++
Sbjct: 155 LWNPSIRKFKLLP-PSGNSCEGHPFFISFGYDHF---IDNYKLISVSTKNEVSVYTLGTD 210
Query: 192 SWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT 251
W I P + I+ +S F++G+V+W A D+S I+S D KE +Q
Sbjct: 211 YWTRIE-DIPNNYHIH----HSGTFVSGTVNWFAM-----DDSSMHFILSLDLVKESYQH 260
Query: 252 VMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP 311
+++P ++ L + G LCVFA+ + ++W+MKEYG ESWTKLY +
Sbjct: 261 LLLP---NSKIDWSMLGLVRGCLCVFAS----SDMYMDVWIMKEYGDQESWTKLYIVPNI 313
Query: 312 Q----RIWWPLGFTERGKIFIR-GECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNF 366
Q + + L ++ ++ + + + L+VY+ + T Y + +
Sbjct: 314 QDQGVKAYKALYISDDDQLLVEFKKLQSNSIKLVVYDSKTGTLNIPEFQNNYKQVASNVY 373
Query: 367 VESIIEP 373
+ES+I P
Sbjct: 374 IESLISP 380
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357472483|ref|XP_003606526.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355507581|gb|AES88723.1| F-box/kelch-repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 180/381 (47%), Gaps = 59/381 (15%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISP 85
LP D++ +I RL VK L +L+C CKSWN+L++ + F + HL S+ L G S
Sbjct: 26 LPFDLIEEILSRLPVKLLLQLQCACKSWNSLISDRKFAKKHL--SLSTTHSLHCVSGYSQ 83
Query: 86 SYLGFYSTKCKEFEDLCDPPFR----TQLADLDVVGSCNGVLCFCSNGSDRS--LIYLWN 139
+++ F ++ FR + +D VGSCNG+LCF + S+ S ++ LWN
Sbjct: 84 NFILKSYPLDSVFTNVTTTVFRRPEFSVCQSVDFVGSCNGILCFAAKESEYSNFIVRLWN 143
Query: 140 PLIKKYMTLP------RPSLNPRYLGFGVNSVSGHLDDFKVVTI---------------- 177
P IKK LP R P+ FG + VS D++KVV +
Sbjct: 144 PSIKKLKELPSLGEPRRFRYIPKMYCFGYDPVS---DNYKVVVVFRELVDFSSSISNSMC 200
Query: 178 --SVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSC 235
+ +VY+L +NSWK+I FP + S ++G+++W A + C
Sbjct: 201 YKDIVTYVKVYNLGTNSWKSIPM-FPY---VASPIEQSGQCVSGTINWLAS----KKSQC 252
Query: 236 PWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 295
I+S D E ++ +++P D L+V L +F+ ++WVMKE
Sbjct: 253 --FIISLDLGNESYKEILLPNYGEVDARILLLSVLRDCLILFS--------GDDVWVMKE 302
Query: 296 YGLTESWTKLYTIE-KPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGV 354
YG ESWTKL+TI P I F + + GE +G Y ++YN T K IG
Sbjct: 303 YGNKESWTKLFTISYMPSFIQAIHIFEDEHVLLHCGE--YGNYSYIIYNCRDGTSKLIG- 359
Query: 355 HLPYYAIQVLNFVESIIEPVS 375
+L + +V VES+I P S
Sbjct: 360 YLNMLSPEVC--VESLISPCS 378
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 383 | ||||||
| TAIR|locus:2076196 | 364 | AT3G23880 "AT3G23880" [Arabido | 0.814 | 0.857 | 0.277 | 1.1e-23 | |
| TAIR|locus:2082410 | 427 | AT3G06240 "AT3G06240" [Arabido | 0.642 | 0.576 | 0.282 | 8.8e-22 | |
| TAIR|locus:2171509 | 416 | AT5G47300 "AT5G47300" [Arabido | 0.728 | 0.670 | 0.251 | 9.1e-17 | |
| TAIR|locus:2027397 | 363 | AT1G11620 "AT1G11620" [Arabido | 0.697 | 0.735 | 0.277 | 1.9e-16 | |
| TAIR|locus:2127465 | 402 | AT4G22390 "AT4G22390" [Arabido | 0.715 | 0.681 | 0.266 | 2.4e-16 | |
| TAIR|locus:2092985 | 367 | AT3G21120 "AT3G21120" [Arabido | 0.707 | 0.738 | 0.268 | 4.7e-16 | |
| TAIR|locus:2076309 | 389 | AT3G10240 "AT3G10240" [Arabido | 0.801 | 0.789 | 0.267 | 6.2e-16 | |
| TAIR|locus:2143186 | 438 | AT5G15660 "AT5G15660" [Arabido | 0.817 | 0.714 | 0.263 | 1.3e-15 | |
| TAIR|locus:2094947 | 360 | AT3G16210 "AT3G16210" [Arabido | 0.605 | 0.644 | 0.284 | 1.7e-15 | |
| TAIR|locus:2060126 | 442 | AT2G07140 "AT2G07140" [Arabido | 0.783 | 0.678 | 0.256 | 1.4e-14 |
| TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 98/353 (27%), Positives = 159/353 (45%)
Query: 17 REMKCSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIH--LNQSMRNP 74
REM S LP ++M +I LRL VK+L R +CVC SW +L++ F H + ++ +
Sbjct: 6 REM-FSPHNLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKAT 64
Query: 75 RPLLFRHGISPSYLGFYSTKCKEFEDLCDPPFRTQ----LADLD---VVGSCNGVLCFCS 127
+G+ + + C + ++ L D VVG+C+G++CF
Sbjct: 65 TSTKSPYGVITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHV 124
Query: 128 NGSDRSLIYLWNPLIKKYMTLPRPSLNPR------YLGFGVNSVSGHLDDFKVVTI---- 177
+ D+SL YLWNP IK L L GFG + DD+KVV +
Sbjct: 125 D-YDKSL-YLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESE---DDYKVVALLQQR 179
Query: 178 -SVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCP 236
V + ++YS R W++ FP + + S +++NG+++W A S S
Sbjct: 180 HQVKIETKIYSTRQKLWRSNT-SFPSGVVV-ADKSRSGIYINGTLNWAATSS-----SSS 232
Query: 237 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEY 296
W I+S+D +++ F+ + P L G L + + ++WVMKE+
Sbjct: 233 WTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKG---ANADVWVMKEF 289
Query: 297 GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349
G SW+KL +I PL ++ G + + E R G L +YN + F
Sbjct: 290 GEVYSWSKLLSIPGLTDFVRPLWISD-GLVVLL-EFRSG---LALYNCSNGRF 337
|
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| TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
Identities = 80/283 (28%), Positives = 134/283 (47%)
Query: 113 LDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLP---RPSL------NPRYLGFGVN 163
+++VGS NG++C S G ++L+NP LP RP N + GFG +
Sbjct: 163 VEIVGSSNGLVCI-SPGE--GAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFD 219
Query: 164 SVSGHLDDFKVVTISVNA----DAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNG 219
++ DD+K+V + + DA VYSL+++SW+ I + E N S V NG
Sbjct: 220 GLT---DDYKLVKLVATSEDILDASVYSLKADSWRRICN---LNYEHNDGSYTSGVHFNG 273
Query: 220 SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFAT 279
++HW S ++ ++V+FD E F+ + +P D + D + ++ N G L
Sbjct: 274 AIHWVFTESRHNQR----VVVAFDIQTEEFREMPVP-DEAEDCSHRFSNFVVGSLNGRLC 328
Query: 280 IPNNTFRSYE-LWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYG 338
+ N+ + ++ +WVM EYG +SW+++ I R PL T+ + + G
Sbjct: 329 VVNSCYDVHDDIWVMSEYGEAKSWSRI-RINLLYRSMKPLCSTKNDEEVL---LELDG-D 383
Query: 339 LLVYNPH---SDTFKCIGVHLPYYAIQVLNFVESIIEPVSQSL 378
L++YN S GV L + +VES+I P S +
Sbjct: 384 LVLYNFETNASSNLGICGVKLSD-GFEANTYVESLISPNSYGI 425
|
|
| TAIR|locus:2171509 AT5G47300 "AT5G47300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 9.1e-17, P = 9.1e-17
Identities = 76/302 (25%), Positives = 138/302 (45%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG--- 82
LP D++ +I R+ +L +LR CK WN L + F HL+++ ++ + L+
Sbjct: 46 LPGDLLEEILCRVPATSLKQLRSTCKQWNNLFNNGRFTRKHLDKAPKDFQNLMLSDSRVF 105
Query: 83 -ISPSYLGFYSTKCKEFEDLCDP--PFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWN 139
+S S+ G S + L D F + ++ V C+G+L C++ +D + I +WN
Sbjct: 106 SMSVSFHGIPSVEATCELSLIDSFSSFEDKF-EISQVFHCDGLL-LCTD-ADNTRIVVWN 162
Query: 140 PLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTIS----VNADAEVYSLRSNSWKN 195
P K + P+ Y FG + + +K+++ S N + +Y + S SW+
Sbjct: 163 PCTGKTRWI-EPNNRCYYYAFGSYLDKSYGNSYKILSYSGYGYENQELAIYEINSQSWRF 221
Query: 196 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMP 255
+ R + R + + V L G +W A S + + +VSFD+ E F+ + +P
Sbjct: 222 L--DVTRDCILER-YTDYGVSLKGHTYWFA--SDEKEKNLSVFLVSFDYTTERFRRLRLP 276
Query: 256 YDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTE--SWTKLYTIEKPQR 313
Y + V + L V NT R+ E+WV G T+ SW+ + ++ P
Sbjct: 277 YQCPDYNTASLSVVREEKLAVLLQ-RENTSRT-EIWVTSRIGETKVVSWSMVLAVDFPSE 334
Query: 314 IW 315
++
Sbjct: 335 LF 336
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| TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 86/310 (27%), Positives = 149/310 (48%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSM-RNPRPLLFR--HG 82
L D++ +I R+ ++L RLR CK W L+ FV HL+ R + +F H
Sbjct: 6 LSSDLVEEILSRVPARSLVRLRSTCKQWEALIAEPRFVNKHLSHMRYREQQFTVFNNEHI 65
Query: 83 ISPSYLGFYSTKCKEFE--DLCDP--PFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLW 138
+SP + S +F + C PF L+ + C+G+L + + +S++ +
Sbjct: 66 VSPLFGSTTSYVGIDFNKPENCGVKLPFPIALSPAINISHCDGLLLYVT----KSMLLVA 121
Query: 139 NPLI--KKYMTLPRP---SLNPRYLGFGVNSVSGHLDDFKVVT----ISVNADAEVYSLR 189
NPL+ K+++ S++ LG+ N SG D +KVV I ++ EVY+ +
Sbjct: 122 NPLLSQKRWIKCSEGFDHSMDAYGLGYLFNQSSGFYD-YKVVRFRCGIKNSSRVEVYAFK 180
Query: 190 SNSWKNIA---YGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWL-IVSFDFA 245
S+SWK + +G + + SSV L G+ +W Y+ + + I SFDF+
Sbjct: 181 SDSWKVVVDTNFGGFDGLPL------SSVCLRGTPYWLG----YNKSGNELMSIQSFDFS 230
Query: 246 KEIFQTVMMP-YDLSTDDADKY--LNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESW 302
KE F+ + +P + + + KY L +F G + T + + LWVMK+ + W
Sbjct: 231 KERFEPLFLPPQSIGSRNLVKYISLGIFRGDQLSLLLECHETCKLH-LWVMKK----QHW 285
Query: 303 TKLYTIEKPQ 312
++L T++ PQ
Sbjct: 286 SRLMTVDVPQ 295
|
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| TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 225 (84.3 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 84/315 (26%), Positives = 139/315 (44%)
Query: 27 PEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGISPS 86
P D++ ++FLRL L + R + K +L+ S FV HL + + L+ P
Sbjct: 5 PTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLR-GPR 63
Query: 87 YLGFYSTKCKEFEDLCDPPFRTQLADL-DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKY 145
L + + E++ D P Q +V GS NGV+ C++ D ++ I +
Sbjct: 64 LLR--TVELDSPENVSDIPHPLQAGGFTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHRL 121
Query: 146 ----MTLPRPSLNPRYL--GFGVNSVSGHLDDFKVVTI------------SVNADAEVYS 187
+ P + Y+ G G +SV DDFKVV I + +V+S
Sbjct: 122 PIEPIDFPERDITREYVFYGLGYDSVG---DDFKVVRIVQCKLKEGKKKFPCPVEVKVFS 178
Query: 188 LRSNSWKNIAYGFPRSIE-INRS-HI----NSSVFLNGSVHWCA--RFSCYHDNSCPWLI 239
L+ NSWK + F I I+ H+ V +N +HW R N+ I
Sbjct: 179 LKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNA----I 234
Query: 240 VSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLT 299
+ +D A + + P +L +D + + V DG +C+ + + ++WV+KEY
Sbjct: 235 IKYDLASDDIGVLSFPQELYIED-NMDIGVLDGCVCLMCY---DEYSHVDVWVLKEYEDY 290
Query: 300 ESWTKLYTIEKPQRI 314
+SWTKLY + KP+ +
Sbjct: 291 KSWTKLYRVPKPESV 305
|
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| TAIR|locus:2092985 AT3G21120 "AT3G21120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 81/302 (26%), Positives = 140/302 (46%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRN-PRPLL---FR- 80
LPED++++I ++ +LAR R C+ WN L+ +F + H R P ++ FR
Sbjct: 3 LPEDLVLEILSKVPAVSLARFRSTCRRWNALVVDGSFAKKHYAYGPRQYPIVIMLIEFRV 62
Query: 81 -------HGISPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGS--CNGVLCFCSNGSD 131
HGI+ + G S K L DP ++D+ + C+G+L C+ D
Sbjct: 63 YLVSIDLHGINNNN-GAPSAKLTGQFSLKDP-LSNSSEEVDIRNAFHCDGLLLCCTK--D 118
Query: 132 RSLIYLWNPLIKKYMTL-PRPSLNPR--Y-LGFGVNSVSGHLDDFKVVTISVNADAEVYS 187
R L+ +WNP + + PR S Y LG+ S S + V + ++EVY
Sbjct: 119 RRLV-VWNPCSGETKWIQPRNSYKESDLYALGYDNRSSSYKILRMHPVGNPFHIESEVYD 177
Query: 188 LRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE 247
S+SW+++ I+ N S+ + + G+ +W A + + ++SFDF++E
Sbjct: 178 FASHSWRSVGVTTDFHIQTNESY---GMNVKGTTYWFALSKDWWSSDDRRFLLSFDFSRE 234
Query: 248 IFQTVMMPYDLSTDDADKYLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTE---SW 302
FQ + +P D+ L+V + LC+FAT+ +++V + T +W
Sbjct: 235 RFQCLPLPADVKNLHLTVVLSVTREEQQLCMFATLGAGNVYKLDVFVATKTEETTGELTW 294
Query: 303 TK 304
TK
Sbjct: 295 TK 296
|
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| TAIR|locus:2076309 AT3G10240 "AT3G10240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 96/359 (26%), Positives = 163/359 (45%)
Query: 17 REMKCSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRP 76
+ K S +P D++ +I LRL K++AR RCV K W+++ T F+ + + R+PR
Sbjct: 18 KRSKSGSSSIPLDLVSEILLRLPEKSVARFRCVSKPWSSITTEPYFINL---LTTRSPRL 74
Query: 77 LL-FRHG----IS--PSYLGFYST--KCKEFEDLCDP---PFRTQLADLDVVGSCNGVLC 124
LL F+ +S P + + T K + L D F ++ S NG++C
Sbjct: 75 LLCFKANEKFFVSSIPQHRQTFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTESVNGLIC 134
Query: 125 FCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGF--GVNSVSGHLDDFKVVTISVNAD 182
F + + + +WNP ++ + LP+P+ N L G + V G KV+ + +A
Sbjct: 135 F----QESARLIVWNPSTRQLLILPKPNGNSNDLTIFLGYDPVEGK---HKVMCMEFSAT 187
Query: 183 AE---VYSLRSNS--WKNIAYGFPRSIEINRS-HINSSVFLNGSVHWCARFSCYHDNSCP 236
+ V +L S W+ + ++ +RS + +S +NG V+ A Y + C
Sbjct: 188 YDTCRVLTLGSAQKLWRTV-----KTHNKHRSDYYDSGRCINGVVYHIA----YVKDMCV 238
Query: 237 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYL-CVFATI-PNNTFRSYELWVMK 294
W+++SFD EIF + +P S+D L ++G L CV I N R LW+++
Sbjct: 239 WVLMSFDVRSEIFDMIELP---SSDVHKDVLIDYNGRLACVGREIIEKNGIR---LWILE 292
Query: 295 EYGLTES---WTKLYTIEKPQRI--WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348
++ S L I+K + GFT G+I H + Y+P +T
Sbjct: 293 KHNKWSSKDFLAPLVHIDKSLSTNKFLLKGFTHAGEIIYVESMFHKSAKIFFYDPVRNT 351
|
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| TAIR|locus:2143186 AT5G15660 "AT5G15660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 94/357 (26%), Positives = 158/357 (44%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFR--HGI 83
+P D++I+I RL +K++AR V K W T + S F + + S PR L+ +
Sbjct: 28 IPHDLVIEILERLPLKSVARFLTVSKLWATTIRSPDFRKSYRGGSSSEPRTLIVSDLNFK 87
Query: 84 SPS-YLGFY--STKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNP 140
P+ L F+ S F PF + NG++ G+D+ +I NP
Sbjct: 88 EPNPKLHFFRPSISSPSFLSSLTCPFTYPRHEEYYYHHVNGLISV-GYGTDQIVI---NP 143
Query: 141 LIKKYMTLPRPSLNPRYL--GFGVNSVSGHLDDFKVVTIS---------VNADAEVYSL- 188
K++TLPRP + + FG +SVS D +KV+ ++ ++ +VY+L
Sbjct: 144 TTGKFITLPRPKTRRKLVISFFGYDSVS---DQYKVLCMTERLRGHPEEASSQHQVYTLG 200
Query: 189 -RSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE 247
+ SWK I P +R ++V +NG V++ A+ C ++ FD +
Sbjct: 201 AKQKSWKMINCSIP-----HRPWSWNAVCINGVVYYIAKTGEGMFRRC---LMRFDLKSD 252
Query: 248 IFQT-VMMPYDLSTDDADKYLNVFDGYLCVFATIPNN-TFRSYELWVMKEYGLTESWTKL 305
++P ++ T D +L + G + IPN F +Y++WVM + G W K
Sbjct: 253 NLDLCTILPEEIQTSLHDYFLINYKGKVA----IPNQPNFYTYDVWVMNQEGGKIEWLKN 308
Query: 306 YTIE-KPQ----RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLP 357
T KP+ R + G T G+ + + + YNP ++F+ I V P
Sbjct: 309 ITFTIKPRKGFVRYLFVTGTTHTGEFILAPTSYTDEFYVFHYNPDMNSFRKIRVQAP 365
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| TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 75/264 (28%), Positives = 124/264 (46%)
Query: 22 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRH 81
S F LPE++ I+I +RL +K+LAR RCVCK+W L+ F E + + S P F
Sbjct: 2 SKF-LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMS-----PAKFVS 55
Query: 82 GISPS-YLGFYSTKCKEFEDLCDPPFRTQLADLDV-VGSCNGVLCFCSNGSDRSLIYLWN 139
+ Y+ K + D P + D V C+G LC + +L+ +WN
Sbjct: 56 FYDKNFYMLDVEGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVTLK--NHTLM-VWN 112
Query: 140 PLIKKYMTLPRPSL--NPRYLGFGVNSVSGHLDDFKVVTISVNAD---AEVYSLRSNSW- 193
P K++ +P P + + LGFG + V H DD+KVVT D A V+ R+ SW
Sbjct: 113 PFSKQFKIVPNPGIYQDSNILGFGYDPV--H-DDYKVVTFIDRLDVSTAHVFEFRTGSWG 169
Query: 194 KNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM 253
+++ +P +R FL+ ++W A + +S I+ F+ + ++ +
Sbjct: 170 ESLRISYPDWHYRDRR----GTFLDQYLYWIA-----YRSSADRFILCFNLSTHEYRKLP 220
Query: 254 MP-YDLSTDDADKYLNVFDGYLCV 276
+P Y+ + +L V LC+
Sbjct: 221 LPVYNQGVTSS--WLGVTSQKLCI 242
|
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| TAIR|locus:2060126 AT2G07140 "AT2G07140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 86/335 (25%), Positives = 150/335 (44%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTS-KTFVEIHLNQSMRNPRPLLF--RHG 82
LP+D++ +I + +L RLR CK WN L K F IH ++ + +PL +
Sbjct: 6 LPKDLVEEILSFVPATSLKRLRSTCKGWNRLFKDDKRFTRIHTEKAAKQFQPLTLTKNYR 65
Query: 83 ISPSYLGFYST----KCKEFEDLCDPPFRTQLA--DLDVVGSCNGVLCFCSNGSDRSLIY 136
I P + + T + K L DP + A ++D V C+G+L C++ D +
Sbjct: 66 ICPINVNLHGTTPSLEVKNEVSLLDPHSKNSAAQFNIDRVFHCDGLL-LCTSQKDSRFV- 123
Query: 137 LWNPL--IKKYMTL-PRPSLNPRYLGFGVNSVSGHLDDFKVVTIS-VNADAEVYSLRSNS 192
+WNPL + K++ L R + ++ G ++ S + +K ++ + ++ D+E+Y S+S
Sbjct: 124 VWNPLTGVTKWIELGDRYNEGMAFI-LGYDNKSCN-KSYKAMSFNYLDKDSEIYEFSSDS 181
Query: 193 WKNI--AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ 250
W+ I P ++ R + L G+ +W ++ FDF E F
Sbjct: 182 WRVIDDIIKPPHYMDYFRECFS----LKGNTYWLGIDRRRRPPDLRITLIKFDFGTEKFG 237
Query: 251 TVMMPYDLSTD--DADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTE--SWTKLY 306
V +P +A V D L V +T ++ E+WV + G SW+K+
Sbjct: 238 YVSLPPPCQVHGFEASNLSVVGDEKLSVLVQA-GSTSKT-EVWVTSKIGEANVVSWSKVL 295
Query: 307 TI-EKPQ-RIWWPLGFT--ERGKIFIRGECRHGGY 337
++ KP W L F E K+F+ C+ G+
Sbjct: 296 SLYPKPDVGFWHGLSFLLDEEKKVFLC--CKSKGW 328
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_X001877 | hypothetical protein (381 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 383 | |||
| TIGR01640 | 230 | TIGR01640, F_box_assoc_1, F-box protein interactio | 5e-25 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 2e-07 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 1e-06 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 1e-06 | |
| pfam07734 | 159 | pfam07734, FBA_1, F-box associated | 1e-05 |
| >gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-25
Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 38/247 (15%)
Query: 116 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY-----LGFGVNSVSGHLD 170
V C+G++CF S + +WNP + LP P G + +
Sbjct: 1 VVPCDGLICF----SYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIE---K 53
Query: 171 DFKVVTISVNADA------EVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWC 224
+KV+ S + +VY+L SNSW+ I P +R V +NG +++
Sbjct: 54 QYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSR-----GVCINGVLYYL 108
Query: 225 ARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKY--LNVFDGYLCVFATIPN 282
A N + IVSFD + E F+ +P D+ Y L + G L V
Sbjct: 109 AYT--LKTNPD-YFIVSFDVSSERFKE-FIPLPCGNSDSVDYLSLINYKGKLAVLK--QK 162
Query: 283 NTFRSYELWVMKEYGLTESWTKLYTIEKPQRI-----WWPLGFTERGKIFIRGECRHGGY 337
+++LWV+ + G E W+KL+T+ P + GFT++G+I + E + Y
Sbjct: 163 KDTNNFDLWVLNDAGKQE-WSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFY 221
Query: 338 GLLVYNP 344
+ YN
Sbjct: 222 -IFYYNV 227
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 2e-07
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 62
LP++++ +I +L+ K+L RLR V + W +L+ S F
Sbjct: 1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37
|
Length = 41 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-06
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 25 RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLN 68
LP+D++++I RL+ K+L RL V K W +L+ S + L
Sbjct: 5 DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48
|
This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 25 RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTL 56
LP+++++ IF L+ ++L RL VC+ W L
Sbjct: 3 DLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34
|
This is an F-box-like family. Length = 47 |
| >gnl|CDD|219544 pfam07734, FBA_1, F-box associated | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM-MPYDLSTDDADKYLNVFDG 272
V L G+ +W A N +L+ SFDF E F + +P+ D L+V
Sbjct: 1 GVSLKGNTYWLAS--EKETNEEDFLL-SFDFTTERFGPRLPLPFQSPDLDT-VSLSVVRE 56
Query: 273 -YLCVFATIPNNTFRSY--ELWVMKEYGLTE-SWTKLYTIEKPQRI 314
L V + E+WV + SW+K T++ P
Sbjct: 57 EKLAVL----LQCDDTSKIEIWVTTKIEPNAVSWSKFLTVDMPPLP 98
|
Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination. Length = 159 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 383 | |||
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.67 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.66 | |
| PF07734 | 164 | FBA_1: F-box associated; InterPro: IPR006527 This | 99.63 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 99.54 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 99.53 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.52 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.5 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.48 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.48 | |
| PLN02153 | 341 | epithiospecifier protein | 99.34 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.28 | |
| PLN02193 | 470 | nitrile-specifier protein | 99.28 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.26 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.23 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.21 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.21 | |
| PLN02153 | 341 | epithiospecifier protein | 99.07 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.05 | |
| PLN02193 | 470 | nitrile-specifier protein | 98.99 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 98.93 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.88 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 98.81 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.71 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.68 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 98.46 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 98.07 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 97.92 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 97.89 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 97.61 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.39 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.08 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 97.07 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 96.97 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 96.63 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 96.51 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 96.49 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 96.36 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 95.69 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 95.61 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 95.55 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 95.3 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 95.19 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 95.17 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.68 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.58 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 94.4 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 94.38 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 94.06 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 93.86 | |
| smart00612 | 47 | Kelch Kelch domain. | 93.12 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.89 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 92.61 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 92.49 | |
| smart00612 | 47 | Kelch Kelch domain. | 92.4 | |
| KOG3545 | 249 | consensus Olfactomedin and related extracellular m | 92.14 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 92.13 | |
| PLN02772 | 398 | guanylate kinase | 91.83 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 91.74 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 90.75 | |
| PF07762 | 131 | DUF1618: Protein of unknown function (DUF1618); In | 90.57 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 90.08 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 88.41 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 88.36 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 87.36 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 85.61 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 85.24 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 85.14 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 85.0 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 83.18 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 83.07 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 82.64 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 82.12 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 82.03 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 81.5 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 81.34 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 80.99 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 80.1 |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=234.32 Aligned_cols=209 Identities=29% Similarity=0.559 Sum_probs=160.5
Q ss_pred EEccCceEEEeecCCCCceEEEEccCccceeecCCCCCC---CC--ceeEEEeccCCCCCCeEEEEEEe------cCeEE
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN---PR--YLGFGVNSVSGHLDDFKVVTISV------NADAE 184 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~---~~--~~~~g~d~~~~~~~~ykVv~~~~------~~~~~ 184 (383)
+++||||||+.. ...++||||+||+++.||+++.. .. .++||||+. +++||||++.. ...++
T Consensus 1 ~~sCnGLlc~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~---~~~YKVv~~~~~~~~~~~~~~~ 73 (230)
T TIGR01640 1 VVPCDGLICFSY----GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPI---EKQYKVLCFSDRSGNRNQSEHQ 73 (230)
T ss_pred CcccceEEEEec----CCcEEEECCCCCCEEecCCCCCcccccccceEEEeeccc---CCcEEEEEEEeecCCCCCccEE
Confidence 379999999886 36899999999999999987652 12 279999998 99999999975 36899
Q ss_pred EEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCC-cEEEEEECCCCeee-EeCCCCCCCCC-
Q 016751 185 VYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCP-WLIVSFDFAKEIFQ-TVMMPYDLSTD- 261 (383)
Q Consensus 185 vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~-~~il~fD~~~~~~~-~i~lP~~~~~~- 261 (383)
||++++++||.+. ..+... ..... +|++||.+||++... .... ..|++||+.+|+|+ .+++| .....
T Consensus 74 Vys~~~~~Wr~~~-~~~~~~-~~~~~---~v~~~G~lyw~~~~~----~~~~~~~IvsFDl~~E~f~~~i~~P-~~~~~~ 143 (230)
T TIGR01640 74 VYTLGSNSWRTIE-CSPPHH-PLKSR---GVCINGVLYYLAYTL----KTNPDYFIVSFDVSSERFKEFIPLP-CGNSDS 143 (230)
T ss_pred EEEeCCCCccccc-cCCCCc-cccCC---eEEECCEEEEEEEEC----CCCCcEEEEEEEcccceEeeeeecC-cccccc
Confidence 9999999999988 333221 11222 899999999999764 1122 38999999999999 48888 54432
Q ss_pred CCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-----eeEEEEEeeCCcEEEEEEeeCC-
Q 016751 262 DADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGKIFIRGECRHG- 335 (383)
Q Consensus 262 ~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~- 335 (383)
.....|++++|+|+++...... ..++||+|+++++ .+|++..+|+.... ...+.++.++|+|++. . ..
T Consensus 144 ~~~~~L~~~~G~L~~v~~~~~~--~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~--~-~~~ 217 (230)
T TIGR01640 144 VDYLSLINYKGKLAVLKQKKDT--NNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLC--C-EDE 217 (230)
T ss_pred ccceEEEEECCEEEEEEecCCC--CcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEE--e-CCC
Confidence 2346899999999999876431 4699999998765 45999999985322 2347888889999998 5 32
Q ss_pred -ceEEEEEeCCCC
Q 016751 336 -GYGLLVYNPHSD 347 (383)
Q Consensus 336 -~~~~~~yd~~t~ 347 (383)
+..++.||++|+
T Consensus 218 ~~~~~~~y~~~~~ 230 (230)
T TIGR01640 218 NPFYIFYYNVGEN 230 (230)
T ss_pred CceEEEEEeccCC
Confidence 324999999985
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-15 Score=145.11 Aligned_cols=236 Identities=17% Similarity=0.191 Sum_probs=163.1
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCC----CCceEEEEccCccceeecCCCCCCCCceeEEEec
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNS 164 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~----~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~ 164 (383)
..|++....|..+.....+ .....++..+|.|...++.+ ....+..+||.+.+|..+|++...+..++.+.
T Consensus 304 e~yd~~~~~w~~~a~m~~~---r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~-- 378 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLAPMPSP---RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV-- 378 (571)
T ss_pred EEecCCcCcEeecCCCCcc---cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--
Confidence 3567777777766544332 12334566777777766532 23478999999999999999998875533331
Q ss_pred cCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcE
Q 016751 165 VSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWL 238 (383)
Q Consensus 165 ~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~ 238 (383)
-+.++.++.. ..++|.|+..+++|..++ +|+..+..+. ++.++|.+|.+++.. ........
T Consensus 379 -----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~g-----v~~~~g~iYi~GG~~--~~~~~l~s 445 (571)
T KOG4441|consen 379 -----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHG-----VAVLGGKLYIIGGGD--GSSNCLNS 445 (571)
T ss_pred -----ECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeE-----EEEECCEEEEEcCcC--CCccccce
Confidence 1223333332 558999999999999999 8887655444 799999999999865 11124479
Q ss_pred EEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEE
Q 016751 239 IVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWP 317 (383)
Q Consensus 239 il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 317 (383)
+.+||+.+++|..+ +++ ..+ ....+++.+|+||++++.++. ...-.+=..+ ...++|+.+..|.... ...
T Consensus 446 ve~YDP~t~~W~~~~~M~-~~R---~~~g~a~~~~~iYvvGG~~~~-~~~~~VE~yd--p~~~~W~~v~~m~~~r--s~~ 516 (571)
T KOG4441|consen 446 VECYDPETNTWTLIAPMN-TRR---SGFGVAVLNGKIYVVGGFDGT-SALSSVERYD--PETNQWTMVAPMTSPR--SAV 516 (571)
T ss_pred EEEEcCCCCceeecCCcc-ccc---ccceEEEECCEEEEECCccCC-CccceEEEEc--CCCCceeEcccCcccc--ccc
Confidence 99999999999988 676 555 456799999999999987751 1111222222 2457899997777654 222
Q ss_pred EEEeeCCcEEEEEEeeCCce----EEEEEeCCCCeEEEEE
Q 016751 318 LGFTERGKIFIRGECRHGGY----GLLVYNPHSDTFKCIG 353 (383)
Q Consensus 318 ~~~~~~g~i~~~~~~~~~~~----~~~~yd~~t~~~~~v~ 353 (383)
-....++.+|++ .+.++. ++.+||++|++|+...
T Consensus 517 g~~~~~~~ly~v--GG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 517 GVVVLGGKLYAV--GGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred cEEEECCEEEEE--ecccCccccceeEEcCCCCCceeeCC
Confidence 233456789998 432222 7999999999999873
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=142.91 Aligned_cols=241 Identities=13% Similarity=0.104 Sum_probs=156.9
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCC----CCceEEEEccCccceeecCCCCCCCCceeEEEec
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNS 164 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~----~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~ 164 (383)
..|++....|..+.....+ . .....+..+|.|.+.++.. ....++.+||.+++|..+|+++..+...+.+.-
T Consensus 275 ~~yd~~~~~W~~l~~mp~~--r-~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~- 350 (557)
T PHA02713 275 LVYNINTMEYSVISTIPNH--I-INYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI- 350 (557)
T ss_pred EEEeCCCCeEEECCCCCcc--c-cceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-
Confidence 3577777777766532222 1 1223455677776665421 134688999999999999999877644222211
Q ss_pred cCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCC-------
Q 016751 165 VSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYH------- 231 (383)
Q Consensus 165 ~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~------- 231 (383)
.+ +|..++. ...+|+|++.+++|+.++ ++|.++.... ++.++|.+|.+++.....
T Consensus 351 ----~g--~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~mp~~r~~~~-----~~~~~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 351 ----DD--TIYAIGGQNGTNVERTIECYTMGDDKWKMLP-DMPIALSSYG-----MCVLDQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred ----CC--EEEEECCcCCCCCCceEEEEECCCCeEEECC-CCCccccccc-----EEEECCEEEEEeCCCcccccccccc
Confidence 11 2333321 347999999999999999 8887775443 788999999998754100
Q ss_pred --------CCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCC-CC
Q 016751 232 --------DNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLT-ES 301 (383)
Q Consensus 232 --------~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~-~~ 301 (383)
+......+.+||+.+++|+.+ ++| ..+ ....+++.+|+||++++..+.....-.+...+- .. ++
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp--~~~~~ 492 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT--NTYNG 492 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCC-ccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEecC--CCCCC
Confidence 001135799999999999988 666 444 345688999999999876531111111223332 33 58
Q ss_pred eEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc-eEEEEEeCCCCeEEEEEEe
Q 016751 302 WTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG-YGLLVYNPHSDTFKCIGVH 355 (383)
Q Consensus 302 W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~yd~~t~~~~~v~~~ 355 (383)
|+.+..|+.+. ...-.+.-+|.||+. ++.++ ..+.+||++|++|..+.-+
T Consensus 493 W~~~~~m~~~r--~~~~~~~~~~~iyv~--Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 493 WELITTTESRL--SALHTILHDNTIMML--HCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred eeEccccCccc--ccceeEEECCEEEEE--eeecceeehhhcCcccccccchhhh
Confidence 99999888764 222233346899999 43222 2589999999999998665
|
|
| >PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-14 Score=119.04 Aligned_cols=147 Identities=31% Similarity=0.527 Sum_probs=102.2
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCC-CCCceEEEEe-CCeEEEEEecCCCCccEEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLST-DDADKYLNVF-DGYLCVFATIPNNTFRSYEL 290 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~-~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~i 290 (383)
+|++||.+||++... . ......|++||+.+|+| ..+++| .... ......|++. +|+||++..... ...++|
T Consensus 1 gV~vnG~~hW~~~~~--~-~~~~~~IlsFDl~~E~F~~~~~lP-~~~~~~~~~~~L~~v~~~~L~~~~~~~~--~~~~~I 74 (164)
T PF07734_consen 1 GVFVNGALHWLAYDE--N-NDEKDFILSFDLSTEKFGRSLPLP-FCNDDDDDSVSLSVVRGDCLCVLYQCDE--TSKIEI 74 (164)
T ss_pred CEEECCEEEeeEEec--C-CCCceEEEEEeccccccCCEECCC-CccCccCCEEEEEEecCCEEEEEEeccC--CccEEE
Confidence 589999999999876 1 11112899999999999 888999 5554 2345667554 679999975443 146999
Q ss_pred EEeccCC-CCCCeEEEEEecCCCc---ee----EEEEEeeCCcEEEEEEeeCCc-----eEEEEEeCCCCeEEEEEEecC
Q 016751 291 WVMKEYG-LTESWTKLYTIEKPQR---IW----WPLGFTERGKIFIRGECRHGG-----YGLLVYNPHSDTFKCIGVHLP 357 (383)
Q Consensus 291 W~l~~~~-~~~~W~~~~~i~~~~~---~~----~~~~~~~~g~i~~~~~~~~~~-----~~~~~yd~~t~~~~~v~~~~~ 357 (383)
|++++++ ++.+|+|..+|+.... .. ..+.+..++++++. ..... ..++.|+ +++..+++++...
T Consensus 75 Wvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~--~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~ 151 (164)
T PF07734_consen 75 WVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVC--CDKETQREEKNKIYIVG-EDGKFIEVDIEDK 151 (164)
T ss_pred EEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEE--EcCCCCccceeEEEEEc-CCCEEEEcccccC
Confidence 9999764 3789999999986543 11 12333445566666 42111 2588888 7788888877533
Q ss_pred -cceeEEeeeecc
Q 016751 358 -YYAIQVLNFVES 369 (383)
Q Consensus 358 -~~~~~~~~y~~s 369 (383)
..+..++.|+||
T Consensus 152 ~~~~~~~~~YvpS 164 (164)
T PF07734_consen 152 SSCWPSICNYVPS 164 (164)
T ss_pred CCCCCCEEEECCC
Confidence 356778899997
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=108.85 Aligned_cols=110 Identities=25% Similarity=0.462 Sum_probs=83.6
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC-CCCCceEEEEeCCeEEEEEecCCCCccEEEEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIPNNTFRSYELWV 292 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~-~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~ 292 (383)
|+++||.+||++... ......|++||+.+|+|+.+++| ... .......|.+++|+|+++..........++||+
T Consensus 1 gicinGvly~~a~~~----~~~~~~IvsFDv~~E~f~~i~~P-~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWv 75 (129)
T PF08268_consen 1 GICINGVLYWLAWSE----DSDNNVIVSFDVRSEKFRFIKLP-EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWV 75 (129)
T ss_pred CEEECcEEEeEEEEC----CCCCcEEEEEEcCCceEEEEEee-eeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEE
Confidence 589999999999873 34567999999999999999987 322 223677899999999999877652234699999
Q ss_pred eccCCCCCCeEEEEEe-cCCCc------eeEEEEEeeCCcEEEE
Q 016751 293 MKEYGLTESWTKLYTI-EKPQR------IWWPLGFTERGKIFIR 329 (383)
Q Consensus 293 l~~~~~~~~W~~~~~i-~~~~~------~~~~~~~~~~g~i~~~ 329 (383)
|++++ +.+|++.+.+ +.... ...+.++..+|+|++.
T Consensus 76 LeD~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 76 LEDYE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred eeccc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 99876 4789988653 33211 4567777778887776
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-12 Score=115.26 Aligned_cols=295 Identities=15% Similarity=0.170 Sum_probs=157.4
Q ss_pred cCCCCCCHHHHHHHHhcCC-hhhhHHhhccchhhHhhcCChHHHHHHHhcCCCCCCcEEEeec-CCCCceeecccCCCcc
Q 016751 21 CSSFRLPEDVMIDIFLRLE-VKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG-ISPSYLGFYSTKCKEF 98 (383)
Q Consensus 21 ~~~~~Lp~Dll~eIL~rLP-~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 98 (383)
..|++||+|||..|..||| ..+++|+|+|||+||+.+.... +. ......|+ ++.... +... +.++.. ..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-~~~~~~~~-~~~~~~~~~~~---~~~~~~-~~ 72 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-NPFRTRPL-ILFNPINPSET---LTDDRS-YI 72 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-CCcccccc-cccCcccCCCC---cccccc-cc
Confidence 4689999999999999998 5799999999999999887421 00 00001111 111110 0000 000000 00
Q ss_pred cccCCCCCCCCCCCeeE---EEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCC---------CceeE-EEecc
Q 016751 99 EDLCDPPFRTQLADLDV---VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP---------RYLGF-GVNSV 165 (383)
Q Consensus 99 ~~l~~p~~~~~~~~~~~---~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~---------~~~~~-g~d~~ 165 (383)
......... ...+.+ .++..|+|.-.......+.+.+.||.++....+|+....- ..+.+ +.+..
T Consensus 73 ~~~~~~ls~--~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~ 150 (373)
T PLN03215 73 SRPGAFLSR--AAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKR 150 (373)
T ss_pred ccccceeee--eEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccc
Confidence 000000000 000111 1356788876542124578899999999987777532221 00222 11100
Q ss_pred ---------------C-CCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeecc
Q 016751 166 ---------------S-GHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSC 229 (383)
Q Consensus 166 ---------------~-~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~ 229 (383)
+ +...+|-|+++.....+.... .++|..++ ....... . -++.+|.+|.+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~--~~~Wt~l~-~~~~~~~--D-----Ii~~kGkfYAvD~~G- 219 (373)
T PLN03215 151 RETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWD--GNVLKALK-QMGYHFS--D-----IIVHKGQTYALDSIG- 219 (373)
T ss_pred cccccceeEEEEEEeecCCCcceEEEEEeecCcEeeec--CCeeeEcc-CCCceee--E-----EEEECCEEEEEcCCC-
Confidence 0 001123344444322222232 48899887 4333322 2 799999999986544
Q ss_pred CCCCCCCcEEEEEECCCCeeeEeCCCCC-----CCCCCCceEEEEeCCeEEEEEecCCC-------------CccEEEEE
Q 016751 230 YHDNSCPWLIVSFDFAKEIFQTVMMPYD-----LSTDDADKYLNVFDGYLCVFATIPNN-------------TFRSYELW 291 (383)
Q Consensus 230 ~~~~~~~~~il~fD~~~~~~~~i~lP~~-----~~~~~~~~~l~~~~g~L~~v~~~~~~-------------~~~~l~iW 291 (383)
.+.++|..-+ .+.+..+.. ... .....|+++.|+|++|...... ....++|+
T Consensus 220 --------~l~~i~~~l~-i~~v~~~i~~~~~~g~~-~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vf 289 (373)
T PLN03215 220 --------IVYWINSDLE-FSRFGTSLDENITDGCW-TGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVY 289 (373)
T ss_pred --------eEEEEecCCc-eeeecceecccccCCcc-cCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEE
Confidence 6777774322 222211101 111 1346799999999999874211 12457888
Q ss_pred EeccCCCCCCeEEEEEecCCCcee---EEEEE-------eeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEE
Q 016751 292 VMKEYGLTESWTKLYTIEKPQRIW---WPLGF-------TERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGV 354 (383)
Q Consensus 292 ~l~~~~~~~~W~~~~~i~~~~~~~---~~~~~-------~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v~~ 354 (383)
+++.. ..+|+++.+++-..++. ..+++ ...+-||+. . +.. ..+||++.++...+..
T Consensus 290 klD~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt--d--d~~-~~v~~~~dg~~~~~~~ 355 (373)
T PLN03215 290 KFDDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT--E--DTM-PKVFKLDNGNGSSIET 355 (373)
T ss_pred EEcCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE--C--CCc-ceEEECCCCCccceEe
Confidence 88753 46899999887654311 11111 123468887 4 443 7899999999776643
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.4e-13 Score=130.75 Aligned_cols=195 Identities=17% Similarity=0.256 Sum_probs=140.9
Q ss_pred ceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-------cCeEEEEEcCCCceeeeccCCCceee
Q 016751 133 SLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-------NADAEVYSLRSNSWKNIAYGFPRSIE 205 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-------~~~~~vyss~t~~W~~~~~~~p~~~~ 205 (383)
..+..+||.+++|..+.+++..+...+.+.- .+ +|..++. ...+++|++.+++|..++ +|...+.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-----~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a-~M~~~R~ 372 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-----NG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA-PMNTKRS 372 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-----CC--EEEEEccccCCCcccceEEEecCCCCceeccC-CccCccc
Confidence 4577899999999999999977644332221 11 2222211 468999999999999998 8888877
Q ss_pred eccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCC
Q 016751 206 INRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNT 284 (383)
Q Consensus 206 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~ 284 (383)
... .+.++|.+|.+++.. +......+..||+.+++|+.+ +++ ..+ .....++.+|+||++++....
T Consensus 373 ~~~-----v~~l~g~iYavGG~d---g~~~l~svE~YDp~~~~W~~va~m~-~~r---~~~gv~~~~g~iYi~GG~~~~- 439 (571)
T KOG4441|consen 373 DFG-----VAVLDGKLYAVGGFD---GEKSLNSVECYDPVTNKWTPVAPML-TRR---SGHGVAVLGGKLYIIGGGDGS- 439 (571)
T ss_pred cce-----eEEECCEEEEEeccc---cccccccEEEecCCCCcccccCCCC-cce---eeeEEEEECCEEEEEcCcCCC-
Confidence 655 789999999999876 234456899999999999998 576 544 567889999999999997762
Q ss_pred ccEEEEEEeccCC-CCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC---ceEEEEEeCCCCeEEEEE
Q 016751 285 FRSYELWVMKEYG-LTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG---GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 285 ~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~---~~~~~~yd~~t~~~~~v~ 353 (383)
.-.+=.++.|+ ..+.|+....|+.... ...++ .-+|.||.+|-. ++ ...+..||++|++|..+.
T Consensus 440 --~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a-~~~~~iYvvGG~-~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 440 --SNCLNSVECYDPETNTWTLIAPMNTRRS-GFGVA-VLNGKIYVVGGF-DGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred --ccccceEEEEcCCCCceeecCCcccccc-cceEE-EECCEEEEECCc-cCCCccceEEEEcCCCCceeEcc
Confidence 21332333332 4678999999988752 22233 346789999322 22 126899999999999984
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-12 Score=124.53 Aligned_cols=212 Identities=14% Similarity=0.123 Sum_probs=138.4
Q ss_pred EccCceEEEeecCC----CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe------cCeEEEE
Q 016751 117 GSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV------NADAEVY 186 (383)
Q Consensus 117 ~s~~Gll~~~~~~~----~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~------~~~~~vy 186 (383)
+..++.|.+.++.. ....++.+||.+++|..+|+++..+...+...- .+ +++.++. ...+++|
T Consensus 291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-----~~--~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-----NN--RIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-----CC--EEEEEeCCCCCEecceEEEE
Confidence 34455554444321 123689999999999999998866543222211 11 1222221 4578999
Q ss_pred EcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCce
Q 016751 187 SLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADK 265 (383)
Q Consensus 187 ss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~ 265 (383)
+..+++|+..+ ++|.++..+. ++.++|.+|.+++.. .+......+..||+.+++|+.+ ++| ..+ ...
T Consensus 364 d~~~~~W~~~~-~lp~~r~~~~-----~~~~~~~iYv~GG~~--~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r---~~~ 431 (534)
T PHA03098 364 KPGESKWREEP-PLIFPRYNPC-----VVNVNNLIYVIGGIS--KNDELLKTVECFSLNTNKWSKGSPLP-ISH---YGG 431 (534)
T ss_pred cCCCCceeeCC-CcCcCCccce-----EEEECCEEEEECCcC--CCCcccceEEEEeCCCCeeeecCCCC-ccc---cCc
Confidence 99999999988 8887664333 688999999998853 1122346899999999999988 666 444 344
Q ss_pred EEEEeCCeEEEEEecCCCCc--cEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC----ceEE
Q 016751 266 YLNVFDGYLCVFATIPNNTF--RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG----GYGL 339 (383)
Q Consensus 266 ~l~~~~g~L~~v~~~~~~~~--~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~~ 339 (383)
..+..+|+|+++++...... ..-.+|..+- .+++|.++..++.+. .....+..+|.||+. ++.. ...+
T Consensus 432 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~v 505 (534)
T PHA03098 432 CAIYHDGKIYVIGGISYIDNIKVYNIVESYNP--VTNKWTELSSLNFPR--INASLCIFNNKIYVV--GGDKYEYYINEI 505 (534)
T ss_pred eEEEECCEEEEECCccCCCCCcccceEEEecC--CCCceeeCCCCCccc--ccceEEEECCEEEEE--cCCcCCccccee
Confidence 56778999999987643110 1123666654 347899987666543 222222336788888 4211 1269
Q ss_pred EEEeCCCCeEEEEE
Q 016751 340 LVYNPHSDTFKCIG 353 (383)
Q Consensus 340 ~~yd~~t~~~~~v~ 353 (383)
.+||+++++|+.+.
T Consensus 506 ~~yd~~~~~W~~~~ 519 (534)
T PHA03098 506 EVYDDKTNTWTLFC 519 (534)
T ss_pred EEEeCCCCEEEecC
Confidence 99999999999873
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-12 Score=126.63 Aligned_cols=194 Identities=10% Similarity=0.140 Sum_probs=131.8
Q ss_pred eEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-------cCeEEEEEcCCCceeeeccCCCceeee
Q 016751 134 LIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-------NADAEVYSLRSNSWKNIAYGFPRSIEI 206 (383)
Q Consensus 134 ~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-------~~~~~vyss~t~~W~~~~~~~p~~~~~ 206 (383)
.+..+||.+++|..+++++..+...+.+. . .+ +|+.++. ...++.|++.++.|..++ ++|.++..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~--l---~~--~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~-~m~~~R~~ 344 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI--V---DN--EIIIAGGYNFNNPSLNKVYKINIENKIHVELP-PMIKNRCR 344 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE--E---CC--EEEEEcCCCCCCCccceEEEEECCCCeEeeCC-CCcchhhc
Confidence 56789999999999999887653322211 1 11 2222221 357899999999999999 88877654
Q ss_pred ccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCc
Q 016751 207 NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTF 285 (383)
Q Consensus 207 ~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~ 285 (383)
.. .+.++|++|.+++.. +......+.+||+.+++|+.+ ++| ..+ .....++++|+||++++......
T Consensus 345 ~~-----~~~~~g~IYviGG~~---~~~~~~sve~Ydp~~~~W~~~~~mp-~~r---~~~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 345 FS-----LAVIDDTIYAIGGQN---GTNVERTIECYTMGDDKWKMLPDMP-IAL---SSYGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred ee-----EEEECCEEEEECCcC---CCCCCceEEEEECCCCeEEECCCCC-ccc---ccccEEEECCEEEEEeCCCcccc
Confidence 43 789999999999864 122345799999999999988 667 554 34567789999999987643100
Q ss_pred -----------------cEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc-----eEEEEEe
Q 016751 286 -----------------RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG-----YGLLVYN 343 (383)
Q Consensus 286 -----------------~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~-----~~~~~yd 343 (383)
..-.+...+- ..++|+.+..|+... .....+.-+|.||+. ++..+ ..+.+||
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~--GG~~~~~~~~~~ve~Yd 486 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGT--IRPGVVSHKDDIYVV--CDIKDEKNVKTCIFRYN 486 (557)
T ss_pred cccccccccccccccccccceEEEECC--CCCeEeecCCCCccc--ccCcEEEECCEEEEE--eCCCCCCccceeEEEec
Confidence 0112333332 357899988887654 233334456899998 42111 1478999
Q ss_pred CCC-CeEEEEE
Q 016751 344 PHS-DTFKCIG 353 (383)
Q Consensus 344 ~~t-~~~~~v~ 353 (383)
+++ ++|+.+.
T Consensus 487 p~~~~~W~~~~ 497 (557)
T PHA02713 487 TNTYNGWELIT 497 (557)
T ss_pred CCCCCCeeEcc
Confidence 999 8999873
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.5e-12 Score=122.90 Aligned_cols=197 Identities=12% Similarity=0.044 Sum_probs=133.9
Q ss_pred cCceEEEeecCC---CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe---cCeEEEEEcCCCc
Q 016751 119 CNGVLCFCSNGS---DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV---NADAEVYSLRSNS 192 (383)
Q Consensus 119 ~~Gll~~~~~~~---~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~---~~~~~vyss~t~~ 192 (383)
.++.|.+.++.. .......+||.+++|..+|+++..+...+... . .+ ++..++. ...++.|+..+++
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~---~~--~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A---NN--KLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E---CC--EEEEECCcCCCCceEEEECCCCe
Confidence 455655544311 22357789999999999999987664422221 1 22 2333322 3578999999999
Q ss_pred eeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeC
Q 016751 193 WKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFD 271 (383)
Q Consensus 193 W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~ 271 (383)
|..++ ++|.++..+. ++.++|.+|.+++.. .....+.+||+.+++|+.+ ++| ..+ .....++.+
T Consensus 343 W~~~~-~l~~~r~~~~-----~~~~~g~IYviGG~~-----~~~~~ve~ydp~~~~W~~~~~m~-~~r---~~~~~~~~~ 407 (480)
T PHA02790 343 WVNMP-SLLKPRCNPA-----VASINNVIYVIGGHS-----ETDTTTEYLLPNHDQWQFGPSTY-YPH---YKSCALVFG 407 (480)
T ss_pred EEECC-CCCCCCcccE-----EEEECCEEEEecCcC-----CCCccEEEEeCCCCEEEeCCCCC-Ccc---ccceEEEEC
Confidence 99999 8887665433 789999999998864 1235688999999999987 555 433 345677899
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC--c--eEEEEEeCCCC
Q 016751 272 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG--G--YGLLVYNPHSD 347 (383)
Q Consensus 272 g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~--~--~~~~~yd~~t~ 347 (383)
|+|+++++. .++.-. ..++|+.+..++.+. ...-++.-+|+||+. ++.+ . ..+.+||++++
T Consensus 408 ~~IYv~GG~-------~e~ydp----~~~~W~~~~~m~~~r--~~~~~~v~~~~IYvi--GG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 408 RRLFLVGRN-------AEFYCE----SSNTWTLIDDPIYPR--DNPELIIVDNKLLLI--GGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CEEEEECCc-------eEEecC----CCCcEeEcCCCCCCc--cccEEEEECCEEEEE--CCcCCCcccceEEEEECCCC
Confidence 999999742 222221 357899988877654 222333457899999 4211 1 25999999999
Q ss_pred eEEEE
Q 016751 348 TFKCI 352 (383)
Q Consensus 348 ~~~~v 352 (383)
+|+..
T Consensus 473 ~W~~~ 477 (480)
T PHA02790 473 SWNIW 477 (480)
T ss_pred eEEec
Confidence 99754
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-10 Score=104.20 Aligned_cols=219 Identities=13% Similarity=0.114 Sum_probs=130.5
Q ss_pred EEccCceEEEeecCC-----CCceEEEEccCccceeecCCCCCCCC--ceeEEEeccCCCCCCeEEEEEEe------cCe
Q 016751 116 VGSCNGVLCFCSNGS-----DRSLIYLWNPLIKKYMTLPRPSLNPR--YLGFGVNSVSGHLDDFKVVTISV------NAD 182 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~-----~~~~~~v~NP~t~~~~~LP~~~~~~~--~~~~g~d~~~~~~~~ykVv~~~~------~~~ 182 (383)
.+..++.|.+..+.. ....++++||.+++|..+|++...+. ..++..... .+ +++.+.. ...
T Consensus 28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~--~iyv~GG~~~~~~~~~ 102 (341)
T PLN02153 28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GT--KLYIFGGRDEKREFSD 102 (341)
T ss_pred EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CC--EEEEECCCCCCCccCc
Confidence 344566666654321 12478999999999999987543221 112211111 11 2333221 347
Q ss_pred EEEEEcCCCceeeeccCC-----CceeeeccCcccceeEECceEEEEEeeccCCCC-----CCCcEEEEEECCCCeeeEe
Q 016751 183 AEVYSLRSNSWKNIAYGF-----PRSIEINRSHINSSVFLNGSVHWCARFSCYHDN-----SCPWLIVSFDFAKEIFQTV 252 (383)
Q Consensus 183 ~~vyss~t~~W~~~~~~~-----p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~-----~~~~~il~fD~~~~~~~~i 252 (383)
+++|+..+++|+.++ .+ |.++..+. ++..+|++|.+++.. ... .....+.+||+.+++|..+
T Consensus 103 v~~yd~~t~~W~~~~-~~~~~~~p~~R~~~~-----~~~~~~~iyv~GG~~--~~~~~~~~~~~~~v~~yd~~~~~W~~l 174 (341)
T PLN02153 103 FYSYDTVKNEWTFLT-KLDEEGGPEARTFHS-----MASDENHVYVFGGVS--KGGLMKTPERFRTIEAYNIADGKWVQL 174 (341)
T ss_pred EEEEECCCCEEEEec-cCCCCCCCCCceeeE-----EEEECCEEEEECCcc--CCCccCCCcccceEEEEECCCCeEeeC
Confidence 899999999999887 55 44443332 688999999998864 111 0124689999999999987
Q ss_pred CCCCC-CCCCCCceEEEEeCCeEEEEEecCCC----C---ccEEEEEEeccCCCCCCeEEEEEe---cCCCceeEEEEEe
Q 016751 253 MMPYD-LSTDDADKYLNVFDGYLCVFATIPNN----T---FRSYELWVMKEYGLTESWTKLYTI---EKPQRIWWPLGFT 321 (383)
Q Consensus 253 ~lP~~-~~~~~~~~~l~~~~g~L~~v~~~~~~----~---~~~l~iW~l~~~~~~~~W~~~~~i---~~~~~~~~~~~~~ 321 (383)
+.+ . .........++..+|+|+++++.... + ...-.++.++- ...+|+++... |... ....++.
T Consensus 175 ~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~~r--~~~~~~~ 249 (341)
T PLN02153 175 PDP-GENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPSAR--SVFAHAV 249 (341)
T ss_pred CCC-CCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCCCc--ceeeeEE
Confidence 432 1 11112344577889999999764310 0 01124565553 24779997643 3322 2222233
Q ss_pred eCCcEEEEEEeeCC-------------ceEEEEEeCCCCeEEEEEE
Q 016751 322 ERGKIFIRGECRHG-------------GYGLLVYNPHSDTFKCIGV 354 (383)
Q Consensus 322 ~~g~i~~~~~~~~~-------------~~~~~~yd~~t~~~~~v~~ 354 (383)
.++.||+. .+.. ...+++||+++++|+.+..
T Consensus 250 ~~~~iyv~--GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 250 VGKYIIIF--GGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred ECCEEEEE--CcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 45788888 3210 0158999999999998853
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-09 Score=102.09 Aligned_cols=220 Identities=14% Similarity=0.099 Sum_probs=132.9
Q ss_pred EEccCceEEEeecCCCCceEEEEcc--CccceeecCCCCC-CCCceeEEEeccCCCCCCeEEEEEEe------------c
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNP--LIKKYMTLPRPSL-NPRYLGFGVNSVSGHLDDFKVVTISV------------N 180 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP--~t~~~~~LP~~~~-~~~~~~~g~d~~~~~~~~ykVv~~~~------------~ 180 (383)
.+..++-|.+..+. ....++++|+ .+++|..+|+++. .+...+...- .+ +|..+.. .
T Consensus 13 ~~~~~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~-----~~--~iYv~GG~~~~~~~~~~~~~ 84 (346)
T TIGR03547 13 GAIIGDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI-----DG--KLYVFGGIGKANSEGSPQVF 84 (346)
T ss_pred EEEECCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcccceEEEE-----CC--EEEEEeCCCCCCCCCcceec
Confidence 34556666665432 2356788875 6789999999874 3332222110 11 1222211 2
Q ss_pred CeEEEEEcCCCceeeeccCCCceeeeccCccccee-EECceEEEEEeeccCC-----------CC---------------
Q 016751 181 ADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSV-FLNGSVHWCARFSCYH-----------DN--------------- 233 (383)
Q Consensus 181 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v-~~~G~lYw~~~~~~~~-----------~~--------------- 233 (383)
..++.|+..+++|+.++..+|.....+. ++ .++|+||.+++..... +.
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~~~~~-----~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGLLGAS-----GFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQ 159 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCccccee-----EEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCC
Confidence 4789999999999998722333322111 33 6899999998753100 00
Q ss_pred -----CCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEE
Q 016751 234 -----SCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYT 307 (383)
Q Consensus 234 -----~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~ 307 (383)
.....+.+||+.+++|+.+ ++| .... ....++..+|+|+++++.........++|..+-...++.|.++..
T Consensus 160 ~~~~~~~~~~v~~YDp~t~~W~~~~~~p-~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 160 PPEDYFWNKNVLSYDPSTNQWRNLGENP-FLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred ChhHcCccceEEEEECCCCceeECccCC-CCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 0025799999999999998 566 3211 345677889999999986532223345666553223468999888
Q ss_pred ecCCCc-----eeEEEEEeeCCcEEEEEEeeCC------------------c---eEEEEEeCCCCeEEEEE
Q 016751 308 IEKPQR-----IWWPLGFTERGKIFIRGECRHG------------------G---YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 308 i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~------------------~---~~~~~yd~~t~~~~~v~ 353 (383)
|+.+.. .....++..+|+||+. .+.. . ..+.+||+++++|+.+.
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~--GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVA--GGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEe--ecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 865421 0111233457889988 3211 0 14789999999998873
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-09 Score=104.87 Aligned_cols=197 Identities=12% Similarity=0.102 Sum_probs=125.0
Q ss_pred ceEEEEccCccceeecCCCCCCC---C-ceeEEEeccCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCC--
Q 016751 133 SLIYLWNPLIKKYMTLPRPSLNP---R-YLGFGVNSVSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGF-- 200 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~~~---~-~~~~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~-- 200 (383)
..++++||.+++|..+|+....+ + ....... .+ +++.+.. ...+++|++.+++|+.+. .+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-----~~--~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~-~~~~ 264 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-----GS--TLYVFGGRDASRQYNGFYSFDTTTNEWKLLT-PVEE 264 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-----CC--EEEEECCCCCCCCCccEEEEECCCCEEEEcC-cCCC
Confidence 35899999999999887542111 1 1111110 11 1222211 357899999999999987 55
Q ss_pred -CceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC-CCCCceEEEEeCCeEEEEE
Q 016751 201 -PRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFA 278 (383)
Q Consensus 201 -p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~-~~~~~~~l~~~~g~L~~v~ 278 (383)
|.++..+. .+..++.+|.+++.. .......+.+||+.+++|+.++.| ... ..+....+++.+|+|++++
T Consensus 265 ~P~~R~~h~-----~~~~~~~iYv~GG~~---~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~R~~~~~~~~~gkiyviG 335 (470)
T PLN02193 265 GPTPRSFHS-----MAADEENVYVFGGVS---ATARLKTLDSYNIVDKKWFHCSTP-GDSFSIRGGAGLEVVQGKVWVVY 335 (470)
T ss_pred CCCCccceE-----EEEECCEEEEECCCC---CCCCcceEEEEECCCCEEEeCCCC-CCCCCCCCCcEEEEECCcEEEEE
Confidence 44444332 677899999998764 112235789999999999988654 221 1124456778899999998
Q ss_pred ecCCCCccEEEEEEeccCCCCCCeEEEEEe---cCCCceeEEEEEeeCCcEEEEEEeeCC----------c---eEEEEE
Q 016751 279 TIPNNTFRSYELWVMKEYGLTESWTKLYTI---EKPQRIWWPLGFTERGKIFIRGECRHG----------G---YGLLVY 342 (383)
Q Consensus 279 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i---~~~~~~~~~~~~~~~g~i~~~~~~~~~----------~---~~~~~y 342 (383)
+..+. ..-++|+++-. +++|+++..+ |... ....++..+++||+. .+.. . ..+++|
T Consensus 336 G~~g~--~~~dv~~yD~~--t~~W~~~~~~g~~P~~R--~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 336 GFNGC--EVDDVHYYDPV--QDKWTQVETFGVRPSER--SVFASAAVGKHIVIF--GGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred CCCCC--ccCceEEEECC--CCEEEEeccCCCCCCCc--ceeEEEEECCEEEEE--CCccCCccccccCccceeccEEEE
Confidence 76531 23467777652 4679998665 3322 222233446788888 3210 0 148999
Q ss_pred eCCCCeEEEEEE
Q 016751 343 NPHSDTFKCIGV 354 (383)
Q Consensus 343 d~~t~~~~~v~~ 354 (383)
|+.|++|+.+..
T Consensus 408 D~~t~~W~~~~~ 419 (470)
T PLN02193 408 DTETLQWERLDK 419 (470)
T ss_pred EcCcCEEEEccc
Confidence 999999998853
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-09 Score=99.31 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=123.2
Q ss_pred eEEEE-ccCcc-ceeecCCCCCCCCc-eeEEEeccCCCCCCeEEEEEEe------cCeEEEEEcCCCce----eeeccCC
Q 016751 134 LIYLW-NPLIK-KYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVVTISV------NADAEVYSLRSNSW----KNIAYGF 200 (383)
Q Consensus 134 ~~~v~-NP~t~-~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~W----~~~~~~~ 200 (383)
.++++ +|..+ +|..+++++..+.+ .+..++ + +++.+.. ...++.|+..++.| +.++ ++
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~------~--~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~l 110 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVE------N--GIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NL 110 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEEC------C--EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CC
Confidence 46666 45433 79999888776543 222221 1 2322221 35789999999988 5666 77
Q ss_pred CceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEe
Q 016751 201 PRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFAT 279 (383)
Q Consensus 201 p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~ 279 (383)
|.++..+. ++.++|++|.+++.. +......+.+||+.+++|+.+ ++| ... ......++.+|+|+++++
T Consensus 111 p~~~~~~~-----~~~~~~~iYv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~~p-~~~--r~~~~~~~~~~~iYv~GG 179 (323)
T TIGR03548 111 PFTFENGS-----ACYKDGTLYVGGGNR---NGKPSNKSYLFNLETQEWFELPDFP-GEP--RVQPVCVKLQNELYVFGG 179 (323)
T ss_pred CcCccCce-----EEEECCEEEEEeCcC---CCccCceEEEEcCCCCCeeECCCCC-CCC--CCcceEEEECCEEEEEcC
Confidence 76654332 788999999998753 122346899999999999998 466 322 134556788999999998
Q ss_pred cCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc---e-eEEEEEeeCCcEEEEEEeeCC--------------------
Q 016751 280 IPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR---I-WWPLGFTERGKIFIRGECRHG-------------------- 335 (383)
Q Consensus 280 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~---~-~~~~~~~~~g~i~~~~~~~~~-------------------- 335 (383)
.... ...+++..+- .+++|+++..++.... . ........++.||+. .+.+
T Consensus 180 ~~~~--~~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~~~~~~~~~~ 253 (323)
T TIGR03548 180 GSNI--AYTDGYKYSP--KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI--GGFNKDVYNDAVIDLATMKDESLK 253 (323)
T ss_pred CCCc--cccceEEEec--CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE--CCcCHHHHHHHHhhhhhccchhhh
Confidence 6531 2345666654 2468998766532111 1 111122345788888 3211
Q ss_pred ----------------ceEEEEEeCCCCeEEEEE
Q 016751 336 ----------------GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 336 ----------------~~~~~~yd~~t~~~~~v~ 353 (383)
...+.+||+++++|+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 254 GYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred hhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 025999999999999885
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-09 Score=100.15 Aligned_cols=224 Identities=13% Similarity=0.100 Sum_probs=131.3
Q ss_pred EEccCceEEEeecCCCCceEEEEccC--ccceeecCCCCC-CCCceeEEEeccCCCCCCeEEEEEEe----------cCe
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPL--IKKYMTLPRPSL-NPRYLGFGVNSVSGHLDDFKVVTISV----------NAD 182 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~--t~~~~~LP~~~~-~~~~~~~g~d~~~~~~~~ykVv~~~~----------~~~ 182 (383)
.+..++-|.+..+. ....++++|+. +++|..+|+++. .+...+... . .+...|+.... ...
T Consensus 34 ~~~~~~~iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~--~---~~~IYV~GG~~~~~~~~~~~~~~~ 107 (376)
T PRK14131 34 GAIDNNTVYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAF--I---DGKLYVFGGIGKTNSEGSPQVFDD 107 (376)
T ss_pred EEEECCEEEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCCCcccceEEE--E---CCEEEEEcCCCCCCCCCceeEccc
Confidence 44567777665431 33457788775 578999998764 332211111 0 11111111100 247
Q ss_pred EEEEEcCCCceeeeccCCCceeeeccCcccceeE-ECceEEEEEeeccCC-CC---------------------------
Q 016751 183 AEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVF-LNGSVHWCARFSCYH-DN--------------------------- 233 (383)
Q Consensus 183 ~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~-~~G~lYw~~~~~~~~-~~--------------------------- 233 (383)
+++|+..+++|+.++...|.....+. ++. .+|.||.+++..... .+
T Consensus 108 v~~YD~~~n~W~~~~~~~p~~~~~~~-----~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~ 182 (376)
T PRK14131 108 VYKYDPKTNSWQKLDTRSPVGLAGHV-----AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKP 182 (376)
T ss_pred EEEEeCCCCEEEeCCCCCCCcccceE-----EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCCh
Confidence 89999999999998722233322111 344 799999998853100 00
Q ss_pred ---CCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 016751 234 ---SCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 309 (383)
Q Consensus 234 ---~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 309 (383)
.....+.+||+.+++|+.+ ++|...+ ....++..+++|+++++....+....++|..+-+..+.+|.++..|+
T Consensus 183 ~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 183 EDYFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred hhcCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC
Confidence 0125799999999999988 5662122 34567788999999998543223456677665333457899988886
Q ss_pred CCCc------eeEEEEEeeCCcEEEEEEeeC-C----------------c--eEEEEEeCCCCeEEEEE
Q 016751 310 KPQR------IWWPLGFTERGKIFIRGECRH-G----------------G--YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 310 ~~~~------~~~~~~~~~~g~i~~~~~~~~-~----------------~--~~~~~yd~~t~~~~~v~ 353 (383)
.... .....+...++.||+.|-... . . ..+.+||+++++|+.+.
T Consensus 260 ~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 260 PAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 5421 011112335678888831100 0 0 02568999999998773
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-10 Score=111.14 Aligned_cols=193 Identities=10% Similarity=0.056 Sum_probs=127.5
Q ss_pred eEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-------cCeEEEEEcCCCceeeeccCCCceeee
Q 016751 134 LIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-------NADAEVYSLRSNSWKNIAYGFPRSIEI 206 (383)
Q Consensus 134 ~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-------~~~~~vyss~t~~W~~~~~~~p~~~~~ 206 (383)
.+.-+|+.+++|..+++.+....+.+... .+ +++.++. ...++.|+..+++|..++ .+|.++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~R~~ 335 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYCFGSVVL------NN--VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-ELIYPRKN 335 (534)
T ss_pred eeeecchhhhhcccccCccccccceEEEE------CC--EEEEECCCcCCCCeeccEEEEeCCCCeeeECC-CCCccccc
Confidence 34557888999998877664322111111 11 1222221 247899999999999988 78766554
Q ss_pred ccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCc
Q 016751 207 NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTF 285 (383)
Q Consensus 207 ~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~ 285 (383)
+. .+.++|.+|.+++.. +......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++...++.
T Consensus 336 ~~-----~~~~~~~lyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~lp-~~r---~~~~~~~~~~~iYv~GG~~~~~~ 403 (534)
T PHA03098 336 PG-----VTVFNNRIYVIGGIY---NSISLNTVESWKPGESKWREEPPLI-FPR---YNPCVVNVNNLIYVIGGISKNDE 403 (534)
T ss_pred ce-----EEEECCEEEEEeCCC---CCEecceEEEEcCCCCceeeCCCcC-cCC---ccceEEEECCEEEEECCcCCCCc
Confidence 33 788999999998864 122345789999999999988 667 544 44567888999999988543211
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC-------ceEEEEEeCCCCeEEEEE
Q 016751 286 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG-------GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 286 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~-------~~~~~~yd~~t~~~~~v~ 353 (383)
..-.++.++- .+++|.+...++... ....++..++.||+. ++.. ...+.+||+++++|+.+.
T Consensus 404 ~~~~v~~yd~--~t~~W~~~~~~p~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 404 LLKTVECFSL--NTNKWSKGSPLPISH--YGGCAIYHDGKIYVI--GGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred ccceEEEEeC--CCCeeeecCCCCccc--cCceEEEECCEEEEE--CCccCCCCCcccceEEEecCCCCceeeCC
Confidence 2234555553 246799987776543 222334456789888 3211 114899999999999874
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-10 Score=107.81 Aligned_cols=180 Identities=9% Similarity=0.010 Sum_probs=119.5
Q ss_pred ecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeE-EEeccCCC
Q 016751 90 FYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGF-GVNSVSGH 168 (383)
Q Consensus 90 ~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~-g~d~~~~~ 168 (383)
.|++....|..++....+ ......++.+|.|.+.++.+....+..+||.+++|..+|+++..+...+. .++
T Consensus 291 ~Ydp~~~~W~~~~~m~~~---r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~----- 362 (480)
T PHA02790 291 AVNYISNNWIPIPPMNSP---RLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASIN----- 362 (480)
T ss_pred EEECCCCEEEECCCCCch---hhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEEC-----
Confidence 466666777766543222 12223456788887666432335678899999999999999876643222 221
Q ss_pred CCCeEEEEEEe----cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEEC
Q 016751 169 LDDFKVVTISV----NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDF 244 (383)
Q Consensus 169 ~~~ykVv~~~~----~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~ 244 (383)
+ +|..++. ...++.|++++++|+.++ +++.++..+. ++.++|.+|.+++ ...+||+
T Consensus 363 -g--~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~m~~~r~~~~-----~~~~~~~IYv~GG-----------~~e~ydp 422 (480)
T PHA02790 363 -N--VIYVIGGHSETDTTTEYLLPNHDQWQFGP-STYYPHYKSC-----ALVFGRRLFLVGR-----------NAEFYCE 422 (480)
T ss_pred -C--EEEEecCcCCCCccEEEEeCCCCEEEeCC-CCCCccccce-----EEEECCEEEEECC-----------ceEEecC
Confidence 1 2322221 357899999999999998 8887765443 6789999999874 3678999
Q ss_pred CCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEE
Q 016751 245 AKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTK 304 (383)
Q Consensus 245 ~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~ 304 (383)
.+++|+.+ ++| ..+ ....+++.+|+||++++..+.. ..-.+...+- .+++|+.
T Consensus 423 ~~~~W~~~~~m~-~~r---~~~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~--~~~~W~~ 476 (480)
T PHA02790 423 SSNTWTLIDDPI-YPR---DNPELIIVDNKLLLIGGFYRGS-YIDTIEVYNN--RTYSWNI 476 (480)
T ss_pred CCCcEeEcCCCC-CCc---cccEEEEECCEEEEECCcCCCc-ccceEEEEEC--CCCeEEe
Confidence 99999988 566 434 4567889999999999865321 1122333332 3467864
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-08 Score=91.12 Aligned_cols=203 Identities=12% Similarity=0.070 Sum_probs=117.3
Q ss_pred eecccCCCcccccCCCC-CCCCCCCeeEEEccCceEEEeecCC---CCceEEEEccCccceeecCCC-----CCCCCcee
Q 016751 89 GFYSTKCKEFEDLCDPP-FRTQLADLDVVGSCNGVLCFCSNGS---DRSLIYLWNPLIKKYMTLPRP-----SLNPRYLG 159 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~s~~Gll~~~~~~~---~~~~~~v~NP~t~~~~~LP~~-----~~~~~~~~ 159 (383)
..|+.....|..+.... .+.........++.+|.|.+..+.. ....++++||.+++|..++++ |..+...+
T Consensus 53 ~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~ 132 (341)
T PLN02153 53 YVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHS 132 (341)
T ss_pred EEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeE
Confidence 35666666777654321 1110111223455567765554321 234789999999999999875 32222211
Q ss_pred EEEeccCCCCCCeEEEEEEe----------cCeEEEEEcCCCceeeeccCCC---ceeeeccCcccceeEECceEEEEEe
Q 016751 160 FGVNSVSGHLDDFKVVTISV----------NADAEVYSLRSNSWKNIAYGFP---RSIEINRSHINSSVFLNGSVHWCAR 226 (383)
Q Consensus 160 ~g~d~~~~~~~~ykVv~~~~----------~~~~~vyss~t~~W~~~~~~~p---~~~~~~~~~~~~~v~~~G~lYw~~~ 226 (383)
.... .+...|+.... ...+++|+.++++|+.++ .+. ..+..+. .+.++|++|.+++
T Consensus 133 ~~~~-----~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~-~~~~~~~~r~~~~-----~~~~~~~iyv~GG 201 (341)
T PLN02153 133 MASD-----ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP-DPGENFEKRGGAG-----FAVVQGKIWVVYG 201 (341)
T ss_pred EEEE-----CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC-CCCCCCCCCCcce-----EEEECCeEEEEec
Confidence 1111 11111111110 136899999999999887 443 2221111 5789999999876
Q ss_pred eccC-----CCCCCCcEEEEEECCCCeeeEeC----CCCCCCCCCCceEEEEeCCeEEEEEecCCC--------CccEEE
Q 016751 227 FSCY-----HDNSCPWLIVSFDFAKEIFQTVM----MPYDLSTDDADKYLNVFDGYLCVFATIPNN--------TFRSYE 289 (383)
Q Consensus 227 ~~~~-----~~~~~~~~il~fD~~~~~~~~i~----lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~--------~~~~l~ 289 (383)
.... ........+.+||+.+.+|+.+. +| ..+ .....+..+++|+++++.... +....+
T Consensus 202 ~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~ 277 (341)
T PLN02153 202 FATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP-SAR---SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNE 277 (341)
T ss_pred cccccccCCccceecCceEEEEcCCCcEEeccccCCCC-CCc---ceeeeEEECCEEEEECcccCCcccccccccccccc
Confidence 4210 00112357999999999999884 45 333 345567889999999885310 011237
Q ss_pred EEEeccCCCCCCeEEEEEe
Q 016751 290 LWVMKEYGLTESWTKLYTI 308 (383)
Q Consensus 290 iW~l~~~~~~~~W~~~~~i 308 (383)
+|.++-. +..|+++...
T Consensus 278 v~~~d~~--~~~W~~~~~~ 294 (341)
T PLN02153 278 GYALDTE--TLVWEKLGEC 294 (341)
T ss_pred EEEEEcC--ccEEEeccCC
Confidence 8888853 4689987643
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.8e-08 Score=90.83 Aligned_cols=161 Identities=13% Similarity=0.147 Sum_probs=97.3
Q ss_pred CeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCC--cEEEEEECCCCeeeEe-CCCCC
Q 016751 181 ADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCP--WLIVSFDFAKEIFQTV-MMPYD 257 (383)
Q Consensus 181 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~--~~il~fD~~~~~~~~i-~lP~~ 257 (383)
..+++|+..+++|+.++ .+|........ .+.++|+||.+++.. ..+... .....||+.+.+|..+ .+| .
T Consensus 189 ~~v~~YD~~t~~W~~~~-~~p~~~~~~~a----~v~~~~~iYv~GG~~--~~~~~~~~~~~~~~~~~~~~W~~~~~~p-~ 260 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG-ESPFLGTAGSA----VVIKGNKLWLINGEI--KPGLRTDAVKQGKFTGNNLKWQKLPDLP-P 260 (376)
T ss_pred ceEEEEECCCCeeeECC-cCCCCCCCcce----EEEECCEEEEEeeeE--CCCcCChhheEEEecCCCcceeecCCCC-C
Confidence 46999999999999988 77753322222 678899999999864 111112 2345667889999987 666 4
Q ss_pred CCCCC-----CceEEEEeCCeEEEEEecCCCCc------cE-------EEEEEeccCC-CCCCeEEEEEecCCCceeEEE
Q 016751 258 LSTDD-----ADKYLNVFDGYLCVFATIPNNTF------RS-------YELWVMKEYG-LTESWTKLYTIEKPQRIWWPL 318 (383)
Q Consensus 258 ~~~~~-----~~~~l~~~~g~L~~v~~~~~~~~------~~-------l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~ 318 (383)
.+... .....++.+|+|+++++...... .. -.+|..+.++ ..+.|++...++... ....
T Consensus 261 ~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--~~~~ 338 (376)
T PRK14131 261 APGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--AYGV 338 (376)
T ss_pred CCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc--cceE
Confidence 33211 11224678999999987542110 00 0123322221 246799988877654 2223
Q ss_pred EEeeCCcEEEEEEeeCCc---eEEEEEeCCCCeEEE
Q 016751 319 GFTERGKIFIRGECRHGG---YGLLVYNPHSDTFKC 351 (383)
Q Consensus 319 ~~~~~g~i~~~~~~~~~~---~~~~~yd~~t~~~~~ 351 (383)
++.-++.||+.|-..... ..+..|+++++++..
T Consensus 339 av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 339 SVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 444567898883110111 168889988877654
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-08 Score=94.87 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=117.1
Q ss_pred eEEEEccCc----cceeecCCC---CCCCCceeEEEeccCCCCCCeEEEEEEe--------cCeEEEEEcCCCceeeecc
Q 016751 134 LIYLWNPLI----KKYMTLPRP---SLNPRYLGFGVNSVSGHLDDFKVVTISV--------NADAEVYSLRSNSWKNIAY 198 (383)
Q Consensus 134 ~~~v~NP~t----~~~~~LP~~---~~~~~~~~~g~d~~~~~~~~ykVv~~~~--------~~~~~vyss~t~~W~~~~~ 198 (383)
..++++|.+ .+|..+++. |..+...+.... .+ +++.+.. ...+++|+.++++|+.++.
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~-----~~--~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~ 210 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQV-----GN--KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPA 210 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCccccEEEEE-----CC--EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCC
Confidence 467888877 789988763 333322111111 11 1222211 2468999999999997762
Q ss_pred --CCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CC---CCCCCCCCCceEEEEeCC
Q 016751 199 --GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MM---PYDLSTDDADKYLNVFDG 272 (383)
Q Consensus 199 --~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~l---P~~~~~~~~~~~l~~~~g 272 (383)
..|..... ... ++.+++.||.+++.. .......+.+||+.+++|+.+ ++ | ..+ ....++..++
T Consensus 211 ~g~~P~~~~~-~~~---~v~~~~~lYvfGG~~---~~~~~ndv~~yD~~t~~W~~l~~~~~~P-~~R---~~h~~~~~~~ 279 (470)
T PLN02193 211 TGDVPHLSCL-GVR---MVSIGSTLYVFGGRD---ASRQYNGFYSFDTTTNEWKLLTPVEEGP-TPR---SFHSMAADEE 279 (470)
T ss_pred CCCCCCCccc-ceE---EEEECCEEEEECCCC---CCCCCccEEEEECCCCEEEEcCcCCCCC-CCc---cceEEEEECC
Confidence 12221111 111 678999999998754 112235799999999999987 44 3 333 4456777899
Q ss_pred eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe---cCCCceeEEEEEeeCCcEEEEEEeeCCc---eEEEEEeCCC
Q 016751 273 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI---EKPQRIWWPLGFTERGKIFIRGECRHGG---YGLLVYNPHS 346 (383)
Q Consensus 273 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i---~~~~~~~~~~~~~~~g~i~~~~~~~~~~---~~~~~yd~~t 346 (383)
+|+++++.... ...-.++.++- .+.+|+.+... +... .....+..+++||+. .+..+ ..+++||+++
T Consensus 280 ~iYv~GG~~~~-~~~~~~~~yd~--~t~~W~~~~~~~~~~~~R--~~~~~~~~~gkiyvi--GG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 280 NVYVFGGVSAT-ARLKTLDSYNI--VDKKWFHCSTPGDSFSIR--GGAGLEVVQGKVWVV--YGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EEEEECCCCCC-CCcceEEEEEC--CCCEEEeCCCCCCCCCCC--CCcEEEEECCcEEEE--ECCCCCccCceEEEECCC
Confidence 99999876531 12234555553 24679875431 1111 112222346788887 42111 2599999999
Q ss_pred CeEEEEEE
Q 016751 347 DTFKCIGV 354 (383)
Q Consensus 347 ~~~~~v~~ 354 (383)
++|+.+..
T Consensus 353 ~~W~~~~~ 360 (470)
T PLN02193 353 DKWTQVET 360 (470)
T ss_pred CEEEEecc
Confidence 99999854
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.2e-07 Score=85.57 Aligned_cols=135 Identities=12% Similarity=0.162 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEE--ECCCCeeeEe-CCCCC
Q 016751 181 ADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSF--DFAKEIFQTV-MMPYD 257 (383)
Q Consensus 181 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~f--D~~~~~~~~i-~lP~~ 257 (383)
..+++|+..+++|+.++ .+|........ .+.++|+||.+++.. ........+..| |+.+++|+.+ ++| .
T Consensus 168 ~~v~~YDp~t~~W~~~~-~~p~~~r~~~~----~~~~~~~iyv~GG~~--~~~~~~~~~~~y~~~~~~~~W~~~~~m~-~ 239 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG-ENPFLGTAGSA----IVHKGNKLLLINGEI--KPGLRTAEVKQYLFTGGKLEWNKLPPLP-P 239 (346)
T ss_pred ceEEEEECCCCceeECc-cCCCCcCCCce----EEEECCEEEEEeeee--CCCccchheEEEEecCCCceeeecCCCC-C
Confidence 57999999999999998 77753222221 678899999998864 111112334445 4577799887 666 3
Q ss_pred CCC---CC-CceEEEEeCCeEEEEEecCCCC------------------ccEEEEEEeccCCCCCCeEEEEEecCCCcee
Q 016751 258 LST---DD-ADKYLNVFDGYLCVFATIPNNT------------------FRSYELWVMKEYGLTESWTKLYTIEKPQRIW 315 (383)
Q Consensus 258 ~~~---~~-~~~~l~~~~g~L~~v~~~~~~~------------------~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 315 (383)
.+. .. .....++.+|+|+++++..... ....+++..+ .++|+.+..++... .
T Consensus 240 ~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~----~~~W~~~~~lp~~~--~ 313 (346)
T TIGR03547 240 PKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD----NGKWSKVGKLPQGL--A 313 (346)
T ss_pred CCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec----CCcccccCCCCCCc--e
Confidence 321 00 1233667899999998764210 0134555544 36799998887653 2
Q ss_pred EEEEEeeCCcEEEE
Q 016751 316 WPLGFTERGKIFIR 329 (383)
Q Consensus 316 ~~~~~~~~g~i~~~ 329 (383)
...++..++.||+.
T Consensus 314 ~~~~~~~~~~iyv~ 327 (346)
T TIGR03547 314 YGVSVSWNNGVLLI 327 (346)
T ss_pred eeEEEEcCCEEEEE
Confidence 22334456788888
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-09 Score=69.38 Aligned_cols=40 Identities=28% Similarity=0.741 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHH
Q 016751 23 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 62 (383)
Q Consensus 23 ~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F 62 (383)
+..||+|++.+||+.||++++.+++.|||+|+.++.++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 4689999999999999999999999999999999987743
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-07 Score=86.67 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=101.0
Q ss_pred eEEEEEcCC--CceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee----eEe-CC
Q 016751 182 DAEVYSLRS--NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF----QTV-MM 254 (383)
Q Consensus 182 ~~~vyss~t--~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~----~~i-~l 254 (383)
.+.+|+..+ .+|..+. ++|.++..+. ++.+++.+|.+++.. +......+..||+.+++| ..+ ++
T Consensus 40 ~v~~~~~~~~~~~W~~~~-~lp~~r~~~~-----~~~~~~~lyviGG~~---~~~~~~~v~~~d~~~~~w~~~~~~~~~l 110 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDG-QLPYEAAYGA-----SVSVENGIYYIGGSN---SSERFSSVYRITLDESKEELICETIGNL 110 (323)
T ss_pred eeEEEecCCCceeEEEcc-cCCccccceE-----EEEECCEEEEEcCCC---CCCCceeEEEEEEcCCceeeeeeEcCCC
Confidence 345554222 3799988 8887765433 688899999998754 122346899999999988 444 56
Q ss_pred CCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeC
Q 016751 255 PYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH 334 (383)
Q Consensus 255 P~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~ 334 (383)
| ..+ .....++.+|+|+++++.... ...-.+|.++- .+++|+++..++... .....++..+++||+. .+.
T Consensus 111 p-~~~---~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~--~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~--GG~ 180 (323)
T TIGR03548 111 P-FTF---ENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNL--ETQEWFELPDFPGEP-RVQPVCVKLQNELYVF--GGG 180 (323)
T ss_pred C-cCc---cCceEEEECCEEEEEeCcCCC-ccCceEEEEcC--CCCCeeECCCCCCCC-CCcceEEEECCEEEEE--cCC
Confidence 6 444 345677889999999886431 12335677764 246799987776432 1233334456789998 422
Q ss_pred Cc---eEEEEEeCCCCeEEEEE
Q 016751 335 GG---YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 335 ~~---~~~~~yd~~t~~~~~v~ 353 (383)
+. ..+++||+++++|+.+.
T Consensus 181 ~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 181 SNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCccccceEEEecCCCeeEECC
Confidence 11 14789999999999884
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-08 Score=65.38 Aligned_cols=45 Identities=29% Similarity=0.516 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHHHHHHH
Q 016751 23 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHL 67 (383)
Q Consensus 23 ~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~ 67 (383)
+..||+|++.+||.+|+++++++++.|||+|++++.++.+-..+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 457999999999999999999999999999999999988866543
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-08 Score=63.36 Aligned_cols=39 Identities=36% Similarity=0.702 Sum_probs=36.4
Q ss_pred CCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHHHH
Q 016751 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVE 64 (383)
Q Consensus 26 Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~ 64 (383)
||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887643
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-06 Score=73.21 Aligned_cols=207 Identities=15% Similarity=0.170 Sum_probs=123.9
Q ss_pred CCceEEEEccCccceeecCCCCCCC------------Cc--eeEEEeccCCCCCCeEEEEEEe------cCeEEEEEcCC
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNP------------RY--LGFGVNSVSGHLDDFKVVTISV------NADAEVYSLRS 190 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~------------~~--~~~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t 190 (383)
+...+.+.|..+-+|..+||--... ++ ....++.. ..+.... -...+-|+.++
T Consensus 42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~-------~yvWGGRND~egaCN~Ly~fDp~t 114 (392)
T KOG4693|consen 42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK-------AYVWGGRNDDEGACNLLYEFDPET 114 (392)
T ss_pred CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce-------EEEEcCccCcccccceeeeecccc
Confidence 4557899999999999999832211 00 11111110 1111111 34678899999
Q ss_pred Cceeeecc--CCCceeeeccCcccceeEECceEEEEEeeccCCC-CCCCcEEEEEECCCCeeeEe---CCCCCCCCCCCc
Q 016751 191 NSWKNIAY--GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHD-NSCPWLIVSFDFAKEIFQTV---MMPYDLSTDDAD 264 (383)
Q Consensus 191 ~~W~~~~~--~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~-~~~~~~il~fD~~~~~~~~i---~lP~~~~~~~~~ 264 (383)
+.|+.... -+|..+..+. ++++++.+|..++.. .+ ......+.++|+.|.+|+.+ .-|..-+ ..
T Consensus 115 ~~W~~p~v~G~vPgaRDGHs-----AcV~gn~MyiFGGye--~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR---DF 184 (392)
T KOG4693|consen 115 NVWKKPEVEGFVPGARDGHS-----ACVWGNQMYIFGGYE--EDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR---DF 184 (392)
T ss_pred ccccccceeeecCCccCCce-----eeEECcEEEEecChH--HHHHhhhccceeEeccceeeeehhccCCCchhh---hh
Confidence 99986552 3454444333 788888899887653 00 11235789999999999998 2331322 23
Q ss_pred eEEEEeCCeEEEEEecCCC--------CccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEEEEEeeCCcEEEEEEeeCC
Q 016751 265 KYLNVFDGYLCVFATIPNN--------TFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHG 335 (383)
Q Consensus 265 ~~l~~~~g~L~~v~~~~~~--------~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~ 335 (383)
..-.+.+|.++++++..+. +...-+|-.++- ..+.|.+..+-+.... ......+.-+|++|+. .+..
T Consensus 185 H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~F--GGYn 260 (392)
T KOG4693|consen 185 HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMF--GGYN 260 (392)
T ss_pred hhhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCCCcccccceEEEcceEEEe--cccc
Confidence 3455678999999876441 122234444443 2467887533332221 1222334457889888 4222
Q ss_pred ce------EEEEEeCCCCeEEEEEEecCc
Q 016751 336 GY------GLLVYNPHSDTFKCIGVHLPY 358 (383)
Q Consensus 336 ~~------~~~~yd~~t~~~~~v~~~~~~ 358 (383)
+. .+++||++|..|..++..|..
T Consensus 261 g~ln~HfndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 261 GTLNVHFNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred hhhhhhhcceeecccccchheeeeccCCC
Confidence 21 599999999999999888764
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-05 Score=74.15 Aligned_cols=213 Identities=13% Similarity=0.143 Sum_probs=128.6
Q ss_pred CceEEEEccCccceeecCCC--CCCCCceeEEEeccCCCCCCeEEEEEEe-----------cCeEEEEEcCCCceeeecc
Q 016751 132 RSLIYLWNPLIKKYMTLPRP--SLNPRYLGFGVNSVSGHLDDFKVVTISV-----------NADAEVYSLRSNSWKNIAY 198 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~--~~~~~~~~~g~d~~~~~~~~ykVv~~~~-----------~~~~~vyss~t~~W~~~~~ 198 (383)
++.+|.+|--+.+|..+-.+ |.+++....+..++ + +-.+.... -..+++|++.++.|+.+..
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s---~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~ 171 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS---N--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEF 171 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEecc---C--eEEEeccccCCcchhhhhhhhheeeeeeccchheeecc
Confidence 45799999999999987433 33332222222232 1 11111111 3477899999999998872
Q ss_pred -CCCceeeeccCcccceeEECceEEEEEeeccCC-CCCCCcEEEEEECCCCeeeEeCCCCCCC-CCCCceEEEEe-CCeE
Q 016751 199 -GFPRSIEINRSHINSSVFLNGSVHWCARFSCYH-DNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVF-DGYL 274 (383)
Q Consensus 199 -~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~-~~~~~~~il~fD~~~~~~~~i~lP~~~~-~~~~~~~l~~~-~g~L 274 (383)
..|.++..++ .|.....|.-.++-.-.. +-....-+.+||+.+-+|+.+..+ ... +.+...++.+. +|.+
T Consensus 172 ~g~PS~RSGHR-----MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps-ga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 172 GGGPSPRSGHR-----MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS-GAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred CCCCCCCccce-----eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC-CCCCCCCCcceEEecCCCcE
Confidence 3344444444 566666665555432000 001125789999999999999655 321 22245667777 8999
Q ss_pred EEEEecCC--------CCccEEEEEEeccC---CCCCCeEEEEEecCCCc--eeEEEEEeeCCcEEEEE-EeeC-C----
Q 016751 275 CVFATIPN--------NTFRSYELWVMKEY---GLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRG-ECRH-G---- 335 (383)
Q Consensus 275 ~~v~~~~~--------~~~~~l~iW~l~~~---~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~-~~~~-~---- 335 (383)
++.+++.. .+...-++|.|+-. ..+..|+++..+.+..- .--.++++.+++-++.| -+ + +
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~-D~eeeeE 324 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC-DLEEEEE 324 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee-cccccch
Confidence 99887643 14455689999743 24688999887765432 12235566666555442 11 1 0
Q ss_pred ------ceEEEEEeCCCCeEEEEEEec
Q 016751 336 ------GYGLLVYNPHSDTFKCIGVHL 356 (383)
Q Consensus 336 ------~~~~~~yd~~t~~~~~v~~~~ 356 (383)
...|+.||+..++|.+..+++
T Consensus 325 sl~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 325 SLSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred hhhhhhhhhhhheecccchhhHhhhcc
Confidence 015999999999998876654
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00033 Score=68.71 Aligned_cols=207 Identities=10% Similarity=0.052 Sum_probs=124.1
Q ss_pred eEEEEccCccceeecCCCCCCCCc-eeEEEeccCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeecc--CCCcee
Q 016751 134 LIYLWNPLIKKYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAY--GFPRSI 204 (383)
Q Consensus 134 ~~~v~NP~t~~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~--~~p~~~ 204 (383)
+++++|-.++.|.........+.. ++...... . ++-++.... ...++.|+..|++|+.+.. .+|.++
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~---~-~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV---G-DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEE---C-CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc
Confidence 599999999888876554333211 11110000 1 111111111 3489999999999998773 223333
Q ss_pred eeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC-CCCCceEEEEeCCeEEEEEecCCC
Q 016751 205 EINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIPNN 283 (383)
Q Consensus 205 ~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~-~~~~~~~l~~~~g~L~~v~~~~~~ 283 (383)
..+. .+.++.++|..++.. ...+....+.+||+.+.+|..+... ... .....+.+++.+++++++++....
T Consensus 165 ~~Hs-----~~~~g~~l~vfGG~~--~~~~~~ndl~i~d~~~~~W~~~~~~-g~~P~pR~gH~~~~~~~~~~v~gG~~~~ 236 (482)
T KOG0379|consen 165 AGHS-----ATVVGTKLVVFGGIG--GTGDSLNDLHIYDLETSTWSELDTQ-GEAPSPRYGHAMVVVGNKLLVFGGGDDG 236 (482)
T ss_pred ccce-----EEEECCEEEEECCcc--CcccceeeeeeeccccccceecccC-CCCCCCCCCceEEEECCeEEEEeccccC
Confidence 3332 677778888888776 3233567899999999999998433 222 123567788899999999877632
Q ss_pred CccEEEEEEeccCCCCCCeEEEEEe---cCCCceeEEEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEEEec
Q 016751 284 TFRSYELWVMKEYGLTESWTKLYTI---EKPQRIWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIGVHL 356 (383)
Q Consensus 284 ~~~~l~iW~l~~~~~~~~W~~~~~i---~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~~~~yd~~t~~~~~v~~~~ 356 (383)
+..--++|.++-. ..+|.+.... +........+ + .+..+++.|-.... -..++.||++++.|..+...+
T Consensus 237 ~~~l~D~~~ldl~--~~~W~~~~~~g~~p~~R~~h~~~-~-~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 237 DVYLNDVHILDLS--TWEWKLLPTGGDLPSPRSGHSLT-V-SGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred CceecceEeeecc--cceeeeccccCCCCCCcceeeeE-E-ECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 2344578999864 3778864433 2222222223 3 33345555211011 115899999999999986544
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00033 Score=60.91 Aligned_cols=139 Identities=17% Similarity=0.309 Sum_probs=89.3
Q ss_pred cCeEEEEEcCCCceeeecc--CCCceeeeccCcccceeEECceEEEEEeecc----CCC--CCCCcEEEEEECCCCeeeE
Q 016751 180 NADAEVYSLRSNSWKNIAY--GFPRSIEINRSHINSSVFLNGSVHWCARFSC----YHD--NSCPWLIVSFDFAKEIFQT 251 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~--~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~----~~~--~~~~~~il~fD~~~~~~~~ 251 (383)
...+++++..|.+|+.+.. .+|.-+.++. ++..+|.+|..++..- ++. ...-..|++||+.|+.|..
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~-----a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r 230 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHT-----ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTR 230 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhh-----hhhccceEEEeccccccCCCccchhhhhcceeEEEecccccccc
Confidence 4578899999999998872 2232233444 6788899999987641 011 1223689999999999977
Q ss_pred e----CCCCCCCCCCCceEEEEeCCeEEEEEecCCC-CccEEEEEEeccCCCCCCeEEEEEecC-CCceeEEEEEeeCCc
Q 016751 252 V----MMPYDLSTDDADKYLNVFDGYLCVFATIPNN-TFRSYELWVMKEYGLTESWTKLYTIEK-PQRIWWPLGFTERGK 325 (383)
Q Consensus 252 i----~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~-~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~ 325 (383)
. .+| ..+ .....-+.+|++++++++.+. +..-.++|.++- ...-|.++..-.. +....+-+++..+++
T Consensus 231 ~p~~~~~P-~GR---RSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~~Gk~P~aRRRqC~~v~g~k 304 (392)
T KOG4693|consen 231 TPENTMKP-GGR---RSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVISVRGKYPSARRRQCSVVSGGK 304 (392)
T ss_pred CCCCCcCC-Ccc---cccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeeeccCCCCCcccceeEEEECCE
Confidence 5 233 333 344567899999999988652 123346788775 3467988643221 111233345556678
Q ss_pred EEEE
Q 016751 326 IFIR 329 (383)
Q Consensus 326 i~~~ 329 (383)
+|+.
T Consensus 305 v~LF 308 (392)
T KOG4693|consen 305 VYLF 308 (392)
T ss_pred EEEe
Confidence 8887
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00049 Score=67.55 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=106.2
Q ss_pred eEEEEEcCCCceeeecc--CCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeC----CC
Q 016751 182 DAEVYSLRSNSWKNIAY--GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM----MP 255 (383)
Q Consensus 182 ~~~vyss~t~~W~~~~~--~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~----lP 255 (383)
.+++|+.++..|....+ ..|.++..+. .+.++..||.+++.. ........+.+||+.+.+|..+. .|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~-----~~~~~~~l~lfGG~~--~~~~~~~~l~~~d~~t~~W~~l~~~~~~P 161 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHS-----LSAVGDKLYLFGGTD--KKYRNLNELHSLDLSTRTWSLLSPTGDPP 161 (482)
T ss_pred eeEEeecCCcccccccccCCCCCccccee-----EEEECCeEEEEcccc--CCCCChhheEeccCCCCcEEEecCcCCCC
Confidence 58999999999976653 3343333332 688899999998876 11222458999999999998872 23
Q ss_pred CCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEEEEEeeCCcEEEEEEeeC
Q 016751 256 YDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRH 334 (383)
Q Consensus 256 ~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~ 334 (383)
..+ ....++..+.+|+++++.........++|+++-. ...|.++.......- ...+..+..++++++. .+.
T Consensus 162 -~~r---~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~--gG~ 233 (482)
T KOG0379|consen 162 -PPR---AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVVVGNKLLVF--GGG 233 (482)
T ss_pred -CCc---ccceEEEECCEEEEECCccCcccceeeeeeeccc--cccceecccCCCCCCCCCCceEEEECCeEEEE--ecc
Confidence 333 5567788889999998876643356789999863 355999876654321 2233333344555555 211
Q ss_pred C-c-e---EEEEEeCCCCeEEEEEEec
Q 016751 335 G-G-Y---GLLVYNPHSDTFKCIGVHL 356 (383)
Q Consensus 335 ~-~-~---~~~~yd~~t~~~~~v~~~~ 356 (383)
. + . .++.+|+.+.+|+.+...+
T Consensus 234 ~~~~~~l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 234 DDGDVYLNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred ccCCceecceEeeecccceeeeccccC
Confidence 1 1 1 6999999999999765443
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0038 Score=57.73 Aligned_cols=157 Identities=14% Similarity=0.226 Sum_probs=97.7
Q ss_pred CeEEEEEcCCCceeeecc-CCCceeeeccCcccceeEEC-ceEEEEEeeccCCC---CCCCcEEEEEECCCCeeeEeCCC
Q 016751 181 ADAEVYSLRSNSWKNIAY-GFPRSIEINRSHINSSVFLN-GSVHWCARFSCYHD---NSCPWLIVSFDFAKEIFQTVMMP 255 (383)
Q Consensus 181 ~~~~vyss~t~~W~~~~~-~~p~~~~~~~~~~~~~v~~~-G~lYw~~~~~~~~~---~~~~~~il~fD~~~~~~~~i~lP 255 (383)
..++.|+.++++|+.+.. ..|.++..++ +|++- |.+|..++....+. =+...-+..||+.+.+|..+.++
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq-----~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~ 172 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQ-----AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG 172 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccce-----eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC
Confidence 477899999999998872 3344444444 44444 76666665531110 01124678899999999999877
Q ss_pred CCCCCCCCceEEEEeCCeEEEEEecCCCC---ccEEEEEEeccCCCCCCeEEEEEecCC---CceeEEEEEeeCCcEEEE
Q 016751 256 YDLSTDDADKYLNVFDGYLCVFATIPNNT---FRSYELWVMKEYGLTESWTKLYTIEKP---QRIWWPLGFTERGKIFIR 329 (383)
Q Consensus 256 ~~~~~~~~~~~l~~~~g~L~~v~~~~~~~---~~~l~iW~l~~~~~~~~W~~~~~i~~~---~~~~~~~~~~~~g~i~~~ 329 (383)
..-..+..++++.+..+|.++++.++.. +.-.++|.++-+ ...|.+... +-. ...-..+.+..+|.|++.
T Consensus 173 -g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klep-sga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 173 -GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEP-SGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred -CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccC-CCCCCCCCCcceEEecCCCcEEEE
Confidence 5444456789999999999999876531 122367877652 467999765 221 101222445556767776
Q ss_pred E-Eee--------CCc--eEEEEEeCCC
Q 016751 330 G-ECR--------HGG--YGLLVYNPHS 346 (383)
Q Consensus 330 ~-~~~--------~~~--~~~~~yd~~t 346 (383)
| .++ .+. ..++..++++
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 2 221 011 1578888887
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00011 Score=65.25 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChH
Q 016751 22 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKT 61 (383)
Q Consensus 22 ~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~ 61 (383)
++..||||+++.||+.||.++|+++..|||+|.++.++..
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 3678999999999999999999999999999999987644
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.19 Score=44.59 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=113.2
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
...+|.|++.+. ..++++.++|.+++...+..+. ..++.++.. .+.+-|. ......+++..+++++.+
T Consensus 8 d~~~g~l~~~D~--~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~---~g~l~v~---~~~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 8 DPRDGRLYWVDI--PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP---DGRLYVA---DSGGIAVVDPDTGKVTVL 75 (246)
T ss_dssp ETTTTEEEEEET--TTTEEEEEETTTTEEEEEESSS----EEEEEEECT---TSEEEEE---ETTCEEEEETTTTEEEEE
T ss_pred ECCCCEEEEEEc--CCCEEEEEECCCCeEEEEecCC----CceEEEEcc---CCEEEEE---EcCceEEEecCCCcEEEE
Confidence 444677777664 6789999999998876544433 246666643 3322222 256778889999999877
Q ss_pred ccCCCc---eeeeccCcccceeEECceEEEEEeeccCCCCCCC--cEEEEEECCCCeeeEe----CCCCCCCCCCCceEE
Q 016751 197 AYGFPR---SIEINRSHINSSVFLNGSVHWCARFSCYHDNSCP--WLIVSFDFAKEIFQTV----MMPYDLSTDDADKYL 267 (383)
Q Consensus 197 ~~~~p~---~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~--~~il~fD~~~~~~~~i----~lP~~~~~~~~~~~l 267 (383)
. ..+. ....... ..+--+|.+|+..... ...... ..+..+|.. .+...+ ..| .-+
T Consensus 76 ~-~~~~~~~~~~~~ND---~~vd~~G~ly~t~~~~--~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---------NGi 139 (246)
T PF08450_consen 76 A-DLPDGGVPFNRPND---VAVDPDGNLYVTDSGG--GGASGIDPGSVYRIDPD-GKVTVVADGLGFP---------NGI 139 (246)
T ss_dssp E-EEETTCSCTEEEEE---EEE-TTS-EEEEEECC--BCTTCGGSEEEEEEETT-SEEEEEEEEESSE---------EEE
T ss_pred e-eccCCCcccCCCce---EEEcCCCCEEEEecCC--CccccccccceEEECCC-CeEEEEecCcccc---------cce
Confidence 6 3321 1111111 1456689988765543 111111 679999999 555443 333 123
Q ss_pred EEe-CC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe-cCCCc--eeEEEEEeeCCcEEEEEEeeCCceEEEEE
Q 016751 268 NVF-DG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI-EKPQR--IWWPLGFTERGKIFIRGECRHGGYGLLVY 342 (383)
Q Consensus 268 ~~~-~g-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~y 342 (383)
+.. +| .|++...... +||.++-......+.....+ ..... ...-+++..+|+|++. ....+ .+.+|
T Consensus 140 ~~s~dg~~lyv~ds~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va--~~~~~-~I~~~ 210 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNG------RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA--DWGGG-RIVVF 210 (246)
T ss_dssp EEETTSSEEEEEETTTT------EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE--EETTT-EEEEE
T ss_pred EECCcchheeecccccc------eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE--EcCCC-EEEEE
Confidence 333 34 5666665443 36666543223345543333 33221 1333556678899998 62344 59999
Q ss_pred eCCCCeEEEEEEe
Q 016751 343 NPHSDTFKCIGVH 355 (383)
Q Consensus 343 d~~t~~~~~v~~~ 355 (383)
|++.+....+...
T Consensus 211 ~p~G~~~~~i~~p 223 (246)
T PF08450_consen 211 DPDGKLLREIELP 223 (246)
T ss_dssp ETTSCEEEEEE-S
T ss_pred CCCccEEEEEcCC
Confidence 9996667777766
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.012 Score=53.23 Aligned_cols=40 Identities=25% Similarity=0.519 Sum_probs=36.5
Q ss_pred CCCCC----HHHHHHHHhcCChhhhHHhhccchhhHhhcCChHH
Q 016751 23 SFRLP----EDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 62 (383)
Q Consensus 23 ~~~Lp----~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F 62 (383)
+..|| +++.+.||+.|...+|..|..|||+|+++++++-.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 46789 99999999999999999999999999999998643
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0021 Score=41.69 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=33.0
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP 255 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP 255 (383)
+|.++|.||.+++.. ........+..||+.+++|+.+ ++|
T Consensus 7 ~v~~~~~iyv~GG~~--~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYD--NSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEECCEEEEECCCC--CCCCccccEEEEcCCCCcEEECCCCC
Confidence 789999999999876 1134457999999999999998 666
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0057 Score=38.94 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=33.3
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP 255 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP 255 (383)
++.++|.+|.+++.. ........+..||+.+++|+.+ +||
T Consensus 7 ~~~~~~~iyv~GG~~--~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYD--GNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEETTEEEEEEEBE--STSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEECCEEEEEeeec--ccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 789999999999987 2245557999999999999987 554
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0016 Score=58.12 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHhcCC-----hhhhHHhhccchhhHhhcCChHHHHHH
Q 016751 23 SFRLPEDVMIDIFLRLE-----VKNLARLRCVCKSWNTLLTSKTFVEIH 66 (383)
Q Consensus 23 ~~~Lp~Dll~eIL~rLP-----~~~l~r~r~VcK~W~~li~s~~F~~~~ 66 (383)
+..||+|+|.+||.++= +.+|.++.+|||.|+-..++|.|-+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 46799999999999875 489999999999999999999886654
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.39 Score=42.79 Aligned_cols=127 Identities=14% Similarity=0.162 Sum_probs=82.5
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeee-EeCCCCCCCCC---------CCceEEEEeCCeEEEEEecCCC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTD---------DADKYLNVFDGYLCVFATIPNN 283 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~---------~~~~~l~~~~g~L~~v~~~~~~ 283 (383)
-|+.||.+|+..... ..|+.||+.++... ...|| ..... .....+++-+..|.++....++
T Consensus 74 ~vVYngslYY~~~~s--------~~IvkydL~t~~v~~~~~L~-~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 74 HVVYNGSLYYNKYNS--------RNIVKYDLTTRSVVARRELP-GAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred eEEECCcEEEEecCC--------ceEEEEECcCCcEEEEEECC-ccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 688999999977643 69999999999988 66888 54422 1456788889999888776542
Q ss_pred CccEEEEEEeccCC--CCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEee-CCceEEEEEeCCCCeEEEEEEe
Q 016751 284 TFRSYELWVMKEYG--LTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR-HGGYGLLVYNPHSDTFKCIGVH 355 (383)
Q Consensus 284 ~~~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~yd~~t~~~~~v~~~ 355 (383)
...+.|-.++... ....|.- .++.... . -++-..|.+|.+.... .+.+..++||+.|++-+.+.+.
T Consensus 145 -~g~ivvskld~~tL~v~~tw~T--~~~k~~~-~--naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 145 -NGNIVVSKLDPETLSVEQTWNT--SYPKRSA-G--NAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred -CCcEEEEeeCcccCceEEEEEe--ccCchhh-c--ceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 2358888887532 2344543 2222211 1 1233446777772220 1133679999999988877654
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.14 Score=45.41 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=80.3
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCC---------CCCceEEEEeCCeEEEEEecCCC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLST---------DDADKYLNVFDGYLCVFATIPNN 283 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~---------~~~~~~l~~~~g~L~~v~~~~~~ 283 (383)
-|+.||.+|+..... ..|+.||+.+++.... .+| ...- ....+.|++-+..|-++....+
T Consensus 79 ~VVYngslYY~~~~s--------~~iiKydL~t~~v~~~~~Lp-~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~- 148 (255)
T smart00284 79 VVVYNGSLYFNKFNS--------HDICRFDLTTETYQKEPLLN-GAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ- 148 (255)
T ss_pred EEEECceEEEEecCC--------ccEEEEECCCCcEEEEEecC-ccccccccccccCCCccEEEEEcCCceEEEEeccC-
Confidence 699999999965443 6899999999999644 577 4321 1245789999999988876654
Q ss_pred CccEEEEEEeccCC--CCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEe-eCCceEEEEEeCCCCeEEEEEEe
Q 016751 284 TFRSYELWVMKEYG--LTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGEC-RHGGYGLLVYNPHSDTFKCIGVH 355 (383)
Q Consensus 284 ~~~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~yd~~t~~~~~v~~~ 355 (383)
....+.|-+|+... ....|.- .++.... . -++-..|.+|..... ..+.+..++||..|++-+.+.+.
T Consensus 149 ~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa-~--naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 149 NAGKIVISKLNPATLTIENTWIT--TYNKRSA-S--NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred CCCCEEEEeeCcccceEEEEEEc--CCCcccc-c--ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 23578888887632 2234544 2222211 1 122334667777110 01233689999999887766553
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.1 Score=41.18 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=77.9
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcEE--EEEECCCCeeeEe-CCC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLI--VSFDFAKEIFQTV-MMP 255 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~i--l~fD~~~~~~~~i-~lP 255 (383)
...+-+|+..++.|+.+. ..|+-..... ++...|. +-.+.++- ..+-....+ .-|.-...+|..+ .+|
T Consensus 195 n~ev~sy~p~~n~W~~~G-~~pf~~~aGs-----a~~~~~n~~~lInGEi--KpGLRt~~~k~~~~~~~~~~w~~l~~lp 266 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLG-ENPFYGNAGS-----AVVIKGNKLTLINGEI--KPGLRTAEVKQADFGGDNLKWLKLSDLP 266 (381)
T ss_pred cccccccccccchhhhcC-cCcccCccCc-----ceeecCCeEEEEccee--cCCccccceeEEEeccCceeeeeccCCC
Confidence 557889999999999999 7776554432 4444444 54444432 112222333 4455568899888 677
Q ss_pred CCCCCCC----CceEEEEeCCeEEEEEecCCC------------------CccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 016751 256 YDLSTDD----ADKYLNVFDGYLCVFATIPNN------------------TFRSYELWVMKEYGLTESWTKLYTIEKPQR 313 (383)
Q Consensus 256 ~~~~~~~----~~~~l~~~~g~L~~v~~~~~~------------------~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 313 (383)
.....+ ....-+.++|.+.+.++.... -..+-+||.++. ++|..+.++|...
T Consensus 267 -~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~~l- 340 (381)
T COG3055 267 -APIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQGL- 340 (381)
T ss_pred -CCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCCCc-
Confidence 333221 222334556666666543210 123346788774 6799999999742
Q ss_pred eeEEEEEeeCCcEEEE
Q 016751 314 IWWPLGFTERGKIFIR 329 (383)
Q Consensus 314 ~~~~~~~~~~g~i~~~ 329 (383)
..-+.+.-++.|+++
T Consensus 341 -~YG~s~~~nn~vl~I 355 (381)
T COG3055 341 -AYGVSLSYNNKVLLI 355 (381)
T ss_pred -cceEEEecCCcEEEE
Confidence 222334445567777
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.34 Score=46.44 Aligned_cols=198 Identities=13% Similarity=0.237 Sum_probs=102.6
Q ss_pred ceEEEEccCccceeecCCCCCC--CCc--eeEEEeccCCCCCCeEEEEEEe-----cCeEEEEEcCCCc--eeeeccCCC
Q 016751 133 SLIYLWNPLIKKYMTLPRPSLN--PRY--LGFGVNSVSGHLDDFKVVTISV-----NADAEVYSLRSNS--WKNIAYGFP 201 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~~--~~~--~~~g~d~~~~~~~~ykVv~~~~-----~~~~~vyss~t~~--W~~~~~~~p 201 (383)
.++.++|.+|+||.. |.-.-. +.. +||.+|. -|++++.. ...-+.|.+...+ |+.+....|
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdG-------trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p 128 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDG-------TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTP 128 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCchhhcceEecC-------ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCC
Confidence 378999999999984 332211 112 4444442 35555442 5666788887765 555542222
Q ss_pred ------ceeeeccCcccceeEECceEEEEEeeccCCCCCC--------CcEEEEEECC--CC--eeeEe----CCCCCCC
Q 016751 202 ------RSIEINRSHINSSVFLNGSVHWCARFSCYHDNSC--------PWLIVSFDFA--KE--IFQTV----MMPYDLS 259 (383)
Q Consensus 202 ------~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~--------~~~il~fD~~--~~--~~~~i----~lP~~~~ 259 (383)
.++..+. -+.++++.|.+++-. .+.+. -..+...++. .. -|... .+| ..+
T Consensus 129 ~nG~pPCPRlGHS-----Fsl~gnKcYlFGGLa--NdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P-~pR 200 (830)
T KOG4152|consen 129 KNGPPPCPRLGHS-----FSLVGNKCYLFGGLA--NDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLP-PPR 200 (830)
T ss_pred CCCCCCCCccCce-----eEEeccEeEEecccc--ccccCcccccchhhcceEEEEeccCCceEEEecccccCCCC-CCc
Confidence 2222221 356678888888654 22111 1233333433 33 34432 455 555
Q ss_pred CCCCceEEEEeC---CeEEEEEecCCCCccEE-EEEEeccCCCCCCeEEEE---EecCCCceeEEEEEeeCCcEEEEE-E
Q 016751 260 TDDADKYLNVFD---GYLCVFATIPNNTFRSY-ELWVMKEYGLTESWTKLY---TIEKPQRIWWPLGFTERGKIFIRG-E 331 (383)
Q Consensus 260 ~~~~~~~l~~~~---g~L~~v~~~~~~~~~~l-~iW~l~~~~~~~~W~~~~---~i~~~~~~~~~~~~~~~g~i~~~~-~ 331 (383)
+.+.-..-.+-+ -++++.++..+ .++ ++|.|+-. ...|.+.. ..+++.-.. .+....+++|+.| +
T Consensus 201 ESHTAViY~eKDs~~skmvvyGGM~G---~RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPRSLH--sa~~IGnKMyvfGGW 273 (830)
T KOG4152|consen 201 ESHTAVIYTEKDSKKSKMVVYGGMSG---CRLGDLWTLDLD--TLTWNKPSLSGVAPLPRSLH--SATTIGNKMYVFGGW 273 (830)
T ss_pred ccceeEEEEeccCCcceEEEEccccc---ccccceeEEecc--eeecccccccCCCCCCcccc--cceeecceeEEecce
Confidence 543222222323 25677666655 444 79999863 46798743 223332111 1222334566652 1
Q ss_pred e------------eCCce---EEEEEeCCCCeEEEEE
Q 016751 332 C------------RHGGY---GLLVYNPHSDTFKCIG 353 (383)
Q Consensus 332 ~------------~~~~~---~~~~yd~~t~~~~~v~ 353 (383)
. ..+|+ .+-+.|+.|..|+.+-
T Consensus 274 VPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 274 VPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred eeeeccccccccccceeeeccceeeeeecchheeeee
Confidence 1 01222 5788899999998773
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.7 Score=43.35 Aligned_cols=148 Identities=18% Similarity=0.262 Sum_probs=84.1
Q ss_pred CeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCc-eeEEEeccCCCCCCeEEEEEEe-----cC----
Q 016751 112 DLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVVTISV-----NA---- 181 (383)
Q Consensus 112 ~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~-----~~---- 181 (383)
.+.+.+..+.-|+..+ ......|+|+.|+....+|.+...... +.+.. ++. +..... ..
T Consensus 68 ~~~F~al~gskIv~~d---~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~V------G~~--LY~m~~~~~~~~~~~~~ 136 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVD---QSGRTLVYDTDTRAVATGPRLHSPKRCPISVSV------GDK--LYAMDRSPFPEPAGRPD 136 (342)
T ss_pred eeEEEEecCCeEEEEc---CCCCeEEEECCCCeEeccCCCCCCCcceEEEEe------CCe--EEEeeccCccccccCcc
Confidence 3444444444454444 467799999999999999987765322 22211 111 222221 00
Q ss_pred --eEEEEEc----------CCCceeeeccCCCceeee------ccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEE
Q 016751 182 --DAEVYSL----------RSNSWKNIAYGFPRSIEI------NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFD 243 (383)
Q Consensus 182 --~~~vyss----------~t~~W~~~~~~~p~~~~~------~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD 243 (383)
.+|+++- ++-+|+.++ .+|+.... ..+. +|+ +|.--|+...+ ......+||
T Consensus 137 ~~~FE~l~~~~~~~~~~~~~~w~W~~LP-~PPf~~~~~~~~~~i~sY---avv-~g~~I~vS~~~------~~~GTysfD 205 (342)
T PF07893_consen 137 FPCFEALVYRPPPDDPSPEESWSWRSLP-PPPFVRDRRYSDYRITSY---AVV-DGRTIFVSVNG------RRWGTYSFD 205 (342)
T ss_pred ceeEEEeccccccccccCCCcceEEcCC-CCCccccCCcccceEEEE---EEe-cCCeEEEEecC------CceEEEEEE
Confidence 4555522 234788888 66654432 1222 455 88888886654 113799999
Q ss_pred CCCCeeeEe---CCCCCCCCC---CCceEEEEe--C--CeEEEEEecC
Q 016751 244 FAKEIFQTV---MMPYDLSTD---DADKYLNVF--D--GYLCVFATIP 281 (383)
Q Consensus 244 ~~~~~~~~i---~lP~~~~~~---~~~~~l~~~--~--g~L~~v~~~~ 281 (383)
+.+.+|+.. .|||.+... .....++-+ + ++||......
T Consensus 206 t~~~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~ 253 (342)
T PF07893_consen 206 TESHEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSS 253 (342)
T ss_pred cCCcceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence 999999998 899754421 122333332 2 3777766544
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.055 Score=34.75 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=31.6
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeC
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM 253 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~ 253 (383)
++.++|++|..++............+..||+.+.+|+.+.
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 7899999999998810023455678999999999999874
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=3.8 Score=40.89 Aligned_cols=241 Identities=16% Similarity=0.172 Sum_probs=123.9
Q ss_pred cCCCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHHHH-HHHhcCCCCCC--cEEEeecCC---CCceeeccc-
Q 016751 21 CSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVE-IHLNQSMRNPR--PLLFRHGIS---PSYLGFYST- 93 (383)
Q Consensus 21 ~~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~-~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~- 93 (383)
.-+..||.++...||..|+.+++++++.||+.|+.++.+..... .+.......+. ...+..... .....+|..
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~ 185 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRR 185 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhh
Confidence 35678999999999999999999999999999999998655544 33332222110 000000000 000012211
Q ss_pred --CCCcccccCCCCCC----CCCCCeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCC
Q 016751 94 --KCKEFEDLCDPPFR----TQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSG 167 (383)
Q Consensus 94 --~~~~~~~l~~p~~~----~~~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~ 167 (383)
....|.....+... .....+....-.+|.+.... ....+-+++..++....-+.........++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s---~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~---- 258 (537)
T KOG0274|consen 186 FRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGS---DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFP---- 258 (537)
T ss_pred hhccccccccccccceeecccCcchhhhheeecCeEEecC---CCceeEEeecccceEEEeeccCCCCCceeEEEe----
Confidence 11122222222110 00111111111133333332 445566899999888766444333222344433
Q ss_pred CCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC
Q 016751 168 HLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE 247 (383)
Q Consensus 168 ~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~ 247 (383)
....+++-.....++.|.+..++.-..+-....-... .+...+... .++ ..+..|.++|+.+.
T Consensus 259 -~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~--------~~~~~~~~~-~sg-------s~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 259 -SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR--------CLTIDPFLL-VSG-------SRDNTVKVWDVTNG 321 (537)
T ss_pred -cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE--------EEEccCceE-eec-------cCCceEEEEeccCc
Confidence 3345555555466777888777755433311111000 122222222 221 13468999999987
Q ss_pred eeeEeCC-CCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEecc
Q 016751 248 IFQTVMM-PYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 295 (383)
Q Consensus 248 ~~~~i~l-P~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~ 295 (383)
....+.- + . ....-+.+++.+.+.+..++ .+.||....
T Consensus 322 ~~l~l~~~h-~-----~~V~~v~~~~~~lvsgs~d~----~v~VW~~~~ 360 (537)
T KOG0274|consen 322 ACLNLLRGH-T-----GPVNCVQLDEPLLVSGSYDG----TVKVWDPRT 360 (537)
T ss_pred ceEEEeccc-c-----ccEEEEEecCCEEEEEecCc----eEEEEEhhh
Confidence 7765532 3 1 22344555666666666664 899998873
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.067 Score=34.46 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=27.6
Q ss_pred EccCceEEEeecCC----CCceEEEEccCccceeecCCCCCC
Q 016751 117 GSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLN 154 (383)
Q Consensus 117 ~s~~Gll~~~~~~~----~~~~~~v~NP~t~~~~~LP~~~~~ 154 (383)
.+.+|-|.+..+.. ....++++||.|++|..+|+++..
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 44556655554321 256899999999999999998864
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=4.2 Score=38.87 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=57.5
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELW 291 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW 291 (383)
++..+|.+|.....+ .+.++|..+. .|+. +.+ .. ..++..+|+|++..... .+...
T Consensus 252 P~v~~~~vy~~~~~g---------~l~ald~~tG~~~W~~-~~~-~~------~~~~~~~~~vy~~~~~g-----~l~al 309 (394)
T PRK11138 252 PVVVGGVVYALAYNG---------NLVALDLRSGQIVWKR-EYG-SV------NDFAVDGGRIYLVDQND-----RVYAL 309 (394)
T ss_pred cEEECCEEEEEEcCC---------eEEEEECCCCCEEEee-cCC-Cc------cCcEEECCEEEEEcCCC-----eEEEE
Confidence 788899999876554 8999999765 5654 222 11 12344566776655322 22222
Q ss_pred EeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 292 VMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 292 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
..+. .+..|.... ..... ...|+. .+|.||+. . .++ .++++|.+|++..
T Consensus 310 d~~t--G~~~W~~~~-~~~~~-~~sp~v--~~g~l~v~--~-~~G-~l~~ld~~tG~~~ 358 (394)
T PRK11138 310 DTRG--GVELWSQSD-LLHRL-LTAPVL--YNGYLVVG--D-SEG-YLHWINREDGRFV 358 (394)
T ss_pred ECCC--CcEEEcccc-cCCCc-ccCCEE--ECCEEEEE--e-CCC-EEEEEECCCCCEE
Confidence 2221 223454311 11111 122222 35778777 5 555 4999999998754
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.9 Score=36.48 Aligned_cols=191 Identities=13% Similarity=0.104 Sum_probs=94.9
Q ss_pred cCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC--ceee-
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN--SWKN- 195 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~--~W~~- 195 (383)
.+|.++... ....++.+|+.|++...--..+...... +. ..+=+|++......+..++..++ .|+.
T Consensus 35 ~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~-----~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 35 DGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGPISGA-----PV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp ETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSCGGSG-----EE---EETTEEEEEETTSEEEEEETTTSCEEEEEE
T ss_pred eCCEEEEEc---CCCEEEEEECCCCCEEEEeeccccccce-----ee---ecccccccccceeeeEecccCCcceeeeec
Confidence 678887775 6889999999998855432222111011 11 11122333322347788887665 7984
Q ss_pred eccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCe--eeEe-CCCCCCCCC-----CCceEE
Q 016751 196 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTV-MMPYDLSTD-----DADKYL 267 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~--~~~i-~lP~~~~~~-----~~~~~l 267 (383)
.. ..+......... ....++.+|...... .+.++|+.+.+ |..- ..| ..... .....+
T Consensus 104 ~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~g---------~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 104 LT-SSPPAGVRSSSS---PAVDGDRLYVGTSSG---------KLVALDPKTGKLLWKYPVGEP-RGSSPISSFSDINGSP 169 (238)
T ss_dssp E--SSCTCSTB--SE---EEEETTEEEEEETCS---------EEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEE
T ss_pred cc-cccccccccccC---ceEecCEEEEEeccC---------cEEEEecCCCcEEEEeecCCC-CCCcceeeecccccce
Confidence 44 322221111111 344466777655444 89999988664 4432 333 21110 012334
Q ss_pred EEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 016751 268 NVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 268 ~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
...+|.+++..... ..+.+ -++. .+..|.. +... ........++.+|+. . .++ +++++|++|+
T Consensus 170 ~~~~~~v~~~~~~g----~~~~~-d~~t--g~~~w~~----~~~~--~~~~~~~~~~~l~~~--~-~~~-~l~~~d~~tG 232 (238)
T PF13360_consen 170 VISDGRVYVSSGDG----RVVAV-DLAT--GEKLWSK----PISG--IYSLPSVDGGTLYVT--S-SDG-RLYALDLKTG 232 (238)
T ss_dssp ECCTTEEEEECCTS----SEEEE-ETTT--TEEEEEE----CSS---ECECEECCCTEEEEE--E-TTT-EEEEEETTTT
T ss_pred EEECCEEEEEcCCC----eEEEE-ECCC--CCEEEEe----cCCC--ccCCceeeCCEEEEE--e-CCC-EEEEEECCCC
Confidence 44457555544332 23333 3332 1223622 2211 111123345566666 4 455 4999999999
Q ss_pred eEEE
Q 016751 348 TFKC 351 (383)
Q Consensus 348 ~~~~ 351 (383)
+...
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 8654
|
... |
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.15 Score=46.75 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=82.6
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECc-eEEEEEeeccCC-----------CC--------------
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNG-SVHWCARFSCYH-----------DN-------------- 233 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G-~lYw~~~~~~~~-----------~~-------------- 233 (383)
...++.|++.+++|..++...|....- .. ++..++ .+|+.++..... +.
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~gl~G-~~----~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~ 186 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTGLVG-AS----TFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFD 186 (381)
T ss_pred eeeeEEecCCCChhheecccccccccc-ce----eEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhC
Confidence 458899999999999998555666332 22 566666 899888765310 00
Q ss_pred ------CCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEE
Q 016751 234 ------SCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLY 306 (383)
Q Consensus 234 ------~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~ 306 (383)
-....+++||+.+++|+.. ..|+-... ...++.-+++|.++.+.-..+-++..+|+.+-..++..|.+..
T Consensus 187 ~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a---Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 187 KKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNA---GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred CCHHHhcccccccccccccchhhhcCcCcccCcc---CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence 1125789999999999998 57843331 2233334567888876544444666777776554567899987
Q ss_pred EecCC
Q 016751 307 TIEKP 311 (383)
Q Consensus 307 ~i~~~ 311 (383)
.++.+
T Consensus 264 ~lp~~ 268 (381)
T COG3055 264 DLPAP 268 (381)
T ss_pred CCCCC
Confidence 77654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.2 Score=42.36 Aligned_cols=197 Identities=15% Similarity=0.161 Sum_probs=108.7
Q ss_pred ccCccceeecCCCCCCC---CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceee-eccCCCceeeeccCcccce
Q 016751 139 NPLIKKYMTLPRPSLNP---RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKN-IAYGFPRSIEINRSHINSS 214 (383)
Q Consensus 139 NP~t~~~~~LP~~~~~~---~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~-~~~~~p~~~~~~~~~~~~~ 214 (383)
+|-++-|....-++... ....+.+.|.+ ..+|-|-. ...+++|++.+.+=+. +. ..-.... +. .
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~--P~d~aVt~---S~rvqly~~~~~~~~k~~s-rFk~~v~-s~-----~ 75 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSPKH--PYDFAVTS---SVRVQLYSSVTRSVRKTFS-RFKDVVY-SV-----D 75 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCCCC--CCceEEec---ccEEEEEecchhhhhhhHH-hhcccee-EE-----E
Confidence 44555555543333322 12556666652 34455544 7799999998853221 22 1111111 00 3
Q ss_pred eEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEe---CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEE
Q 016751 215 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTV---MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYEL 290 (383)
Q Consensus 215 v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i---~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~i 290 (383)
+..+|.|...+... ..|-.||..+... ..+ ..| .. .......++.+.+.+. ++ ....+
T Consensus 76 fR~DG~LlaaGD~s--------G~V~vfD~k~r~iLR~~~ah~ap-v~-----~~~f~~~d~t~l~s~s-Dd---~v~k~ 137 (487)
T KOG0310|consen 76 FRSDGRLLAAGDES--------GHVKVFDMKSRVILRQLYAHQAP-VH-----VTKFSPQDNTMLVSGS-DD---KVVKY 137 (487)
T ss_pred eecCCeEEEccCCc--------CcEEEeccccHHHHHHHhhccCc-ee-----EEEecccCCeEEEecC-CC---ceEEE
Confidence 45579998876554 6899999665322 111 222 11 1223334455554444 44 58999
Q ss_pred EEeccCCCCCCeEEEEEecCCCceeEEEEEeeC-CcEEEEEEeeCCceEEEEEeCCCCeEEEEEEecCcceeEEeeeecc
Q 016751 291 WVMKEYGLTESWTKLYTIEKPQRIWWPLGFTER-GKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVES 369 (383)
Q Consensus 291 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-g~i~~~~~~~~~~~~~~~yd~~t~~~~~v~~~~~~~~~~~~~y~~s 369 (383)
|.+... . . +.++.-...+.+...+... +-|++. +.+++ ++-.||.++.+-+.+++. .-.-+|+
T Consensus 138 ~d~s~a---~--v-~~~l~~htDYVR~g~~~~~~~hivvt--GsYDg-~vrl~DtR~~~~~v~eln-------hg~pVe~ 201 (487)
T KOG0310|consen 138 WDLSTA---Y--V-QAELSGHTDYVRCGDISPANDHIVVT--GSYDG-KVRLWDTRSLTSRVVELN-------HGCPVES 201 (487)
T ss_pred EEcCCc---E--E-EEEecCCcceeEeeccccCCCeEEEe--cCCCc-eEEEEEeccCCceeEEec-------CCCceee
Confidence 999862 1 3 4455444335665555543 347776 54566 599999999873333443 2234677
Q ss_pred eeccCCCccccc
Q 016751 370 IIEPVSQSLILS 381 (383)
Q Consensus 370 lv~~~~~~~~~~ 381 (383)
.+.++++++|.+
T Consensus 202 vl~lpsgs~ias 213 (487)
T KOG0310|consen 202 VLALPSGSLIAS 213 (487)
T ss_pred EEEcCCCCEEEE
Confidence 788888877765
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.4 Score=39.05 Aligned_cols=168 Identities=14% Similarity=0.162 Sum_probs=94.3
Q ss_pred eEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCC----CeeeEeCCCCC
Q 016751 182 DAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK----EIFQTVMMPYD 257 (383)
Q Consensus 182 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~----~~~~~i~lP~~ 257 (383)
...+||..+++++.+. +.....++.. .+.-||.+.-.++.. +....+-.|++.+ ..|... | .
T Consensus 47 ~s~~yD~~tn~~rpl~--v~td~FCSgg----~~L~dG~ll~tGG~~-----~G~~~ir~~~p~~~~~~~~w~e~--~-~ 112 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLT--VQTDTFCSGG----AFLPDGRLLQTGGDN-----DGNKAIRIFTPCTSDGTCDWTES--P-N 112 (243)
T ss_pred EEEEEecCCCcEEecc--CCCCCcccCc----CCCCCCCEEEeCCCC-----ccccceEEEecCCCCCCCCceEC--c-c
Confidence 4578999999999877 3333222222 566788887666553 2445788898865 567553 1 1
Q ss_pred CC-CCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCC-CCCCeEEEEEec--CCCceeEEEEEeeCCcEEEEEEe
Q 016751 258 LS-TDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYG-LTESWTKLYTIE--KPQRIWWPLGFTERGKIFIRGEC 332 (383)
Q Consensus 258 ~~-~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~ 332 (383)
.. ..+.+.....+ +|++.++++... ...+.|=-+... ....|....... ...-.+-.+.+..+|+|++. .
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~---~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~--a 187 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNN---PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF--A 187 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCC---CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEE--E
Confidence 11 12245555554 589999988765 455655432211 111222111111 11102333556788999998 5
Q ss_pred eCCceEEEEEeCCCCeE-EEE-EEecCcceeEEeeeecceeccC
Q 016751 333 RHGGYGLLVYNPHSDTF-KCI-GVHLPYYAIQVLNFVESIIEPV 374 (383)
Q Consensus 333 ~~~~~~~~~yd~~t~~~-~~v-~~~~~~~~~~~~~y~~slv~~~ 374 (383)
... -..||.+++++ +.+ .+.+. .+.++..-|-|=++
T Consensus 188 -n~~--s~i~d~~~n~v~~~lP~lPg~---~R~YP~sgssvmLP 225 (243)
T PF07250_consen 188 -NRG--SIIYDYKTNTVVRTLPDLPGG---PRNYPASGSSVMLP 225 (243)
T ss_pred -cCC--cEEEeCCCCeEEeeCCCCCCC---ceecCCCcceEEec
Confidence 333 57889999976 555 33332 45666666554443
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.12 Score=33.02 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=24.6
Q ss_pred eeEE-CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCC
Q 016751 214 SVFL-NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP 255 (383)
Q Consensus 214 ~v~~-~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP 255 (383)
++.+ ++.+|..++.. .+......+..||+.+++|+.+ ++|
T Consensus 7 ~~~~~~~~i~v~GG~~--~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRD--SSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEE-TTEEEEE--EE--E-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEeCCeEEEECCCC--CCCcccCCEEEEECCCCEEEECCCCC
Confidence 5566 58999998876 2223446889999999999998 444
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.11 Score=32.59 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=21.8
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeec
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEIN 207 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~ 207 (383)
...+++|+.++++|+..+ +++..+..+
T Consensus 14 ~~~v~~yd~~~~~W~~~~-~~~~~r~~~ 40 (47)
T smart00612 14 LKSVEVYDPETNKWTPLP-SMPTPRSGH 40 (47)
T ss_pred eeeEEEECCCCCeEccCC-CCCCccccc
Confidence 357899999999999998 888766543
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.89 E-value=3 Score=37.20 Aligned_cols=126 Identities=15% Similarity=0.201 Sum_probs=78.8
Q ss_pred CCCeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEe--cCeEEEE
Q 016751 110 LADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISV--NADAEVY 186 (383)
Q Consensus 110 ~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~--~~~~~vy 186 (383)
....-+++.-+|-|-+... ..+.+...||.+..-..+|++.... ..=.++.|+. . -+.+.. ...++.|
T Consensus 189 ~gpyGi~atpdGsvwyasl--agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpi---g----~~wittwg~g~l~rf 259 (353)
T COG4257 189 GGPYGICATPDGSVWYASL--AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPI---G----RAWITTWGTGSLHRF 259 (353)
T ss_pred CCCcceEECCCCcEEEEec--cccceEEcccccCCcceecCCCcccccccccccCcc---C----cEEEeccCCceeeEe
Confidence 3345678888888877653 4556778899999888888877632 1112233332 1 122222 5688999
Q ss_pred EcCCCceeeeccCCCceeeeccCcccceeEECc-eEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC
Q 016751 187 SLRSNSWKNIAYGFPRSIEINRSHINSSVFLNG-SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS 259 (383)
Q Consensus 187 ss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G-~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~ 259 (383)
+..+.+|++-. +|..-. +.. +++++. -.-|+..-. ...|..||+.+++|.++++| ...
T Consensus 260 dPs~~sW~eyp--LPgs~a--rpy---s~rVD~~grVW~sea~-------agai~rfdpeta~ftv~p~p-r~n 318 (353)
T COG4257 260 DPSVTSWIEYP--LPGSKA--RPY---SMRVDRHGRVWLSEAD-------AGAIGRFDPETARFTVLPIP-RPN 318 (353)
T ss_pred Ccccccceeee--CCCCCC--Ccc---eeeeccCCcEEeeccc-------cCceeecCcccceEEEecCC-CCC
Confidence 99999999776 332211 111 344442 233554332 46899999999999999888 544
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.94 Score=28.36 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=33.7
Q ss_pred ceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 016751 264 DKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 309 (383)
Q Consensus 264 ~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 309 (383)
...+++.+++|+++++........-.+|.++-. ++.|..+..|+
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE--TNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETT--TTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCC--CCEEEEcCCCC
Confidence 467889999999999887644456677888753 47899988775
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.49 E-value=10 Score=36.23 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=78.6
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDL 258 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~ 258 (383)
...+.+|......=..+. ++.......++. ..+-+|. .-+.++.+ ..+++||+.+.+.+.+..| ..
T Consensus 234 d~~lrifqvDGk~N~~lq-S~~l~~fPi~~a---~f~p~G~~~i~~s~rr--------ky~ysyDle~ak~~k~~~~-~g 300 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVNPKLQ-SIHLEKFPIQKA---EFAPNGHSVIFTSGRR--------KYLYSYDLETAKVTKLKPP-YG 300 (514)
T ss_pred CCcEEEEEecCccChhhe-eeeeccCcccee---eecCCCceEEEecccc--------eEEEEeeccccccccccCC-CC
Confidence 557777777543222333 333332222322 4555676 44444444 5899999999999999888 66
Q ss_pred CCCCCceEEEEeC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCce
Q 016751 259 STDDADKYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGY 337 (383)
Q Consensus 259 ~~~~~~~~l~~~~-g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 337 (383)
..........+.. +...++.+.. ..+.+--.+ .++|.--..|+- ...-+.+..+|+.++. +..++
T Consensus 301 ~e~~~~e~FeVShd~~fia~~G~~----G~I~lLhak----T~eli~s~KieG---~v~~~~fsSdsk~l~~--~~~~G- 366 (514)
T KOG2055|consen 301 VEEKSMERFEVSHDSNFIAIAGNN----GHIHLLHAK----TKELITSFKIEG---VVSDFTFSSDSKELLA--SGGTG- 366 (514)
T ss_pred cccchhheeEecCCCCeEEEcccC----ceEEeehhh----hhhhhheeeecc---EEeeEEEecCCcEEEE--EcCCc-
Confidence 6533222333333 3322222222 234333322 244555444443 2445566667765555 42455
Q ss_pred EEEEEeCCCCeEE
Q 016751 338 GLLVYNPHSDTFK 350 (383)
Q Consensus 338 ~~~~yd~~t~~~~ 350 (383)
.|+++|++++...
T Consensus 367 eV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 367 EVYVWNLRQNSCL 379 (514)
T ss_pred eEEEEecCCcceE
Confidence 4999999998644
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.41 Score=29.74 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=23.2
Q ss_pred EEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCC
Q 016751 221 VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLS 259 (383)
Q Consensus 221 lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~ 259 (383)
+|.+++.. +......+..||+.+++|+.+ ++| ..+
T Consensus 2 iyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~~~-~~r 37 (47)
T smart00612 2 IYVVGGFD---GGQRLKSVEVYDPETNKWTPLPSMP-TPR 37 (47)
T ss_pred EEEEeCCC---CCceeeeEEEECCCCCeEccCCCCC-Ccc
Confidence 55555532 122346789999999999887 666 444
|
|
| >KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.14 E-value=7.8 Score=34.08 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=83.7
Q ss_pred CceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCC--------
Q 016751 191 NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTD-------- 261 (383)
Q Consensus 191 ~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~-------- 261 (383)
+.|...- .+|....... -|+.+|.+|...... ..|+.||+.++.- ....+| .....
T Consensus 56 ~~~~~~~-~lp~~~~gTg-----~VVynGs~yynk~~t--------~~ivky~l~~~~~~~~~~lp-~a~y~~~~~y~~~ 120 (249)
T KOG3545|consen 56 GRKAEKY-RLPYSWDGTG-----HVVYNGSLYYNKAGT--------RNIIKYDLETRTVAGSAALP-YAGYHNPSPYYWG 120 (249)
T ss_pred cCcceEE-eCCCCccccc-----eEEEcceEEeeccCC--------cceEEEEeecceeeeeeecc-ccccCCCcccccC
Confidence 4555544 5665554332 699999999976544 6899999998544 333666 33311
Q ss_pred -CCceEEEEeCCeEEEEEecCCCCccEEEEEEeccC--CCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeC-Cce
Q 016751 262 -DADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEY--GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH-GGY 337 (383)
Q Consensus 262 -~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~ 337 (383)
.....+++.+..|.++....+ +...+.|-.|+.. .....|.- .++.... - -++...|.+|.+..... ...
T Consensus 121 g~sdiD~avDE~GLWviYat~~-~~g~iv~skLdp~tl~~e~tW~T--~~~k~~~-~--~aF~iCGvLY~v~S~~~~~~~ 194 (249)
T KOG3545|consen 121 GHSDIDLAVDENGLWVIYATPE-NAGTIVLSKLDPETLEVERTWNT--TLPKRSA-G--NAFMICGVLYVVHSYNCTHTQ 194 (249)
T ss_pred CCccccceecccceeEEecccc-cCCcEEeeccCHHHhheeeeecc--ccCCCCc-C--ceEEEeeeeEEEeccccCCce
Confidence 145678888888988876654 2355667777753 12344533 1222110 0 12333466777621111 111
Q ss_pred EEEEEeCCCCeEEEEEEe
Q 016751 338 GLLVYNPHSDTFKCIGVH 355 (383)
Q Consensus 338 ~~~~yd~~t~~~~~v~~~ 355 (383)
.-++||..+++-+.+.+.
T Consensus 195 i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 195 ISYAYDTTTGTQERIDLP 212 (249)
T ss_pred EEEEEEcCCCceeccccc
Confidence 237999999988777643
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=92.13 E-value=3.4 Score=36.14 Aligned_cols=124 Identities=11% Similarity=0.127 Sum_probs=66.3
Q ss_pred EECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC---CCCCceEEEEe--CC--eEEEEEec-CCCCccE
Q 016751 216 FLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS---TDDADKYLNVF--DG--YLCVFATI-PNNTFRS 287 (383)
Q Consensus 216 ~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~---~~~~~~~l~~~--~g--~L~~v~~~-~~~~~~~ 287 (383)
.+||.+. +... ..+...|+.|++|..++.| ... .......++-. .+ ++..+... .......
T Consensus 3 sCnGLlc-~~~~---------~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~ 71 (230)
T TIGR01640 3 PCDGLIC-FSYG---------KRLVVWNPSTGQSRWLPTP-KSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSE 71 (230)
T ss_pred ccceEEE-EecC---------CcEEEECCCCCCEEecCCC-CCcccccccceEEEeecccCCcEEEEEEEeecCCCCCcc
Confidence 4688883 3322 3799999999999998765 431 11011223321 12 22222211 1111245
Q ss_pred EEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeC-Cce-EEEEEeCCCCeEEE-EEEe
Q 016751 288 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH-GGY-GLLVYNPHSDTFKC-IGVH 355 (383)
Q Consensus 288 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~-~~~~yd~~t~~~~~-v~~~ 355 (383)
++|..+.. ++|..+...+........ ++.-+|.++....... ... .++.||++++++++ +...
T Consensus 72 ~~Vys~~~----~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 72 HQVYTLGS----NSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EEEEEeCC----CCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 66666654 479987633221111222 5556788887722211 111 59999999999995 6543
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.1 Score=42.56 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=53.3
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe----CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYE 289 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i----~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~ 289 (383)
++.++.++|..++.. .++.....+.+||..+.+|... ..| ..+. .+..+..-+++|.++..... ..-+
T Consensus 30 av~igdk~yv~GG~~--d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-~~r~--GhSa~v~~~~rilv~~~~~~---~~~~ 101 (398)
T PLN02772 30 SVTIGDKTYVIGGNH--EGNTLSIGVQILDKITNNWVSPIVLGTGP-KPCK--GYSAVVLNKDRILVIKKGSA---PDDS 101 (398)
T ss_pred eEEECCEEEEEcccC--CCccccceEEEEECCCCcEecccccCCCC-CCCC--cceEEEECCceEEEEeCCCC---Cccc
Confidence 899999999999865 1122456899999999999775 344 4443 23444455789998876655 4678
Q ss_pred EEEeccC
Q 016751 290 LWVMKEY 296 (383)
Q Consensus 290 iW~l~~~ 296 (383)
||.|+-+
T Consensus 102 ~w~l~~~ 108 (398)
T PLN02772 102 IWFLEVD 108 (398)
T ss_pred eEEEEcC
Confidence 9999753
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=91.74 E-value=5.1 Score=37.61 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=60.9
Q ss_pred EEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCcc------EEEEEEecc------CCCCCCeEEE
Q 016751 238 LIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFR------SYELWVMKE------YGLTESWTKL 305 (383)
Q Consensus 238 ~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~------~l~iW~l~~------~~~~~~W~~~ 305 (383)
.++.||..+..... +| ...........+..+|+||+.......... .+++-.... ......|..
T Consensus 87 ~t~vyDt~t~av~~--~P-~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 87 RTLVYDTDTRAVAT--GP-RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred CeEEEECCCCeEec--cC-CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 68999999887774 44 322222334445558889999876432111 556554431 122345555
Q ss_pred EEecCCCc---e------eEEEEEeeCCcEEEEEEeeCCc-eEEEEEeCCCCeEEEE
Q 016751 306 YTIEKPQR---I------WWPLGFTERGKIFIRGECRHGG-YGLLVYNPHSDTFKCI 352 (383)
Q Consensus 306 ~~i~~~~~---~------~~~~~~~~~g~i~~~~~~~~~~-~~~~~yd~~t~~~~~v 352 (383)
+|.+.+ . +...++.++..|++. . .+. ...++||.++.+|+++
T Consensus 163 --LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS--~-~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 163 --LPPPPFVRDRRYSDYRITSYAVVDGRTIFVS--V-NGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred --CCCCCccccCCcccceEEEEEEecCCeEEEE--e-cCCceEEEEEEcCCcceeec
Confidence 443332 1 333444423367775 3 332 1289999999999998
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.53 Score=30.03 Aligned_cols=43 Identities=30% Similarity=0.537 Sum_probs=31.4
Q ss_pred ceEEEEeCCeEEEEEec--CCCCccEEEEEEeccCCCCCCeEEEEEe
Q 016751 264 DKYLNVFDGYLCVFATI--PNNTFRSYELWVMKEYGLTESWTKLYTI 308 (383)
Q Consensus 264 ~~~l~~~~g~L~~v~~~--~~~~~~~l~iW~l~~~~~~~~W~~~~~i 308 (383)
....++.+++|+++++. +.......++|+++.. +.+|+++..+
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~--t~~W~~~~~~ 48 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE--TNQWTELSPM 48 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECC--CCEEeecCCC
Confidence 45677889999999988 3334456688999863 5789986544
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa | Back alignment and domain information |
|---|
Probab=90.57 E-value=2.3 Score=33.62 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=52.5
Q ss_pred EEEEEECCCC--eeeEeCCCCCCCCC-----------CCceEEEEeCCeEEEEEecCC------CCccEEEEEEeccC-C
Q 016751 238 LIVSFDFAKE--IFQTVMMPYDLSTD-----------DADKYLNVFDGYLCVFATIPN------NTFRSYELWVMKEY-G 297 (383)
Q Consensus 238 ~il~fD~~~~--~~~~i~lP~~~~~~-----------~~~~~l~~~~g~L~~v~~~~~------~~~~~l~iW~l~~~-~ 297 (383)
+|+..|+..+ .++-++|| ..... .....+++.+|+|-+|..... .....+.+|.+... .
T Consensus 7 GIL~CD~~~~~p~l~~vpLP-~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLP-PPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CEEEEECCCCCccEEEEeCC-CccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 6888888765 66777888 54421 133467888999988876543 13567999999874 2
Q ss_pred CCCCeEEEEEecCCC
Q 016751 298 LTESWTKLYTIEKPQ 312 (383)
Q Consensus 298 ~~~~W~~~~~i~~~~ 312 (383)
....|.+-++++...
T Consensus 86 ~~~~W~~d~~v~~~d 100 (131)
T PF07762_consen 86 SSWEWKKDCEVDLSD 100 (131)
T ss_pred CCCCEEEeEEEEhhh
Confidence 357899999888765
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.08 E-value=12 Score=32.65 Aligned_cols=188 Identities=12% Similarity=0.169 Sum_probs=100.9
Q ss_pred EEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCc-eeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC---
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY-LGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN--- 191 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~--- 191 (383)
.--.+|--|+..+ .+..+-+|||..+..+.-=...-..-. .+..+|.+ |+..-.....+++++.+|+
T Consensus 24 ryN~dGnY~ltcG--sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns-------kf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 24 RYNVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS-------KFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred EEccCCCEEEEcC--CCceEEeecccccceeeeecCCCceeeecccccccc-------ccccCCCCceEEEEEcccCeee
Confidence 4456677777775 677888999988765532111110000 33333332 1111111457888999885
Q ss_pred -ceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe
Q 016751 192 -SWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF 270 (383)
Q Consensus 192 -~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~ 270 (383)
.||.....+..- .+-..+ +|.+.|.+ ...+-++|-.+..+.+++.= +...+ ...-...
T Consensus 95 Rr~rgH~aqVNtV-~fNees---SVv~Sgsf--------------D~s~r~wDCRS~s~ePiQil-dea~D--~V~Si~v 153 (307)
T KOG0316|consen 95 RRFRGHLAQVNTV-RFNEES---SVVASGSF--------------DSSVRLWDCRSRSFEPIQIL-DEAKD--GVSSIDV 153 (307)
T ss_pred eecccccceeeEE-EecCcc---eEEEeccc--------------cceeEEEEcccCCCCccchh-hhhcC--ceeEEEe
Confidence 677655222222 222322 56666544 24899999999999988554 43332 1222344
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc--eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
.++..+.+..++ +++.+-+... ++....+ -...+.+..+|+..+. .--+. .+-..|-+|++
T Consensus 154 ~~heIvaGS~DG----tvRtydiR~G----------~l~sDy~g~pit~vs~s~d~nc~La--~~l~s-tlrLlDk~tGk 216 (307)
T KOG0316|consen 154 AEHEIVAGSVDG----TVRTYDIRKG----------TLSSDYFGHPITSVSFSKDGNCSLA--SSLDS-TLRLLDKETGK 216 (307)
T ss_pred cccEEEeeccCC----cEEEEEeecc----------eeehhhcCCcceeEEecCCCCEEEE--eeccc-eeeecccchhH
Confidence 566666665554 5555544431 1111111 1445666777776666 31233 37777777776
Q ss_pred EE
Q 016751 349 FK 350 (383)
Q Consensus 349 ~~ 350 (383)
+-
T Consensus 217 lL 218 (307)
T KOG0316|consen 217 LL 218 (307)
T ss_pred HH
Confidence 53
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=24 Score=33.71 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=94.1
Q ss_pred cCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC--ceeee
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN--SWKNI 196 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~--~W~~~ 196 (383)
.+|.|.+.. ..+.++.+|+.|++.+.--+.+... . -.|.. .++ +|+.......+.-++..++ .|+.-
T Consensus 119 ~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~~~~-~----ssP~v--~~~-~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 119 AGGKVYIGS---EKGQVYALNAEDGEVAWQTKVAGEA-L----SRPVV--SDG-LVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred ECCEEEEEc---CCCEEEEEECCCCCCcccccCCCce-e----cCCEE--ECC-EEEEECCCCEEEEEEccCCCEeeeec
Confidence 466666654 4678888999987743321111110 0 00100 011 2222222446788888776 58865
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeE-eCCCCCCCCC-----CCceEEE
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQT-VMMPYDLSTD-----DADKYLN 268 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~-i~lP~~~~~~-----~~~~~l~ 268 (383)
. ..|........+ ++..+|.+|+....+ .+.++|..+. .|+. +..| ..... ......+
T Consensus 188 ~-~~~~~~~~~~~s---P~v~~~~v~~~~~~g---------~v~a~d~~~G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 188 L-DVPSLTLRGESA---PATAFGGAIVGGDNG---------RVSAVLMEQGQLIWQQRISQP-TGATEIDRLVDVDTTPV 253 (394)
T ss_pred C-CCCcccccCCCC---CEEECCEEEEEcCCC---------EEEEEEccCChhhheeccccC-CCccchhcccccCCCcE
Confidence 4 322111111122 677889888865544 7999998765 4653 2223 21100 0011223
Q ss_pred EeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 269 VFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 269 ~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
..+|.|++.... + .+ ..++-...+..|.... ... ..+ . ..++.||+. . .++ .++++|.++++
T Consensus 254 v~~~~vy~~~~~-g----~l--~ald~~tG~~~W~~~~--~~~---~~~-~-~~~~~vy~~--~-~~g-~l~ald~~tG~ 315 (394)
T PRK11138 254 VVGGVVYALAYN-G----NL--VALDLRSGQIVWKREY--GSV---NDF-A-VDGGRIYLV--D-QND-RVYALDTRGGV 315 (394)
T ss_pred EECCEEEEEEcC-C----eE--EEEECCCCCEEEeecC--CCc---cCc-E-EECCEEEEE--c-CCC-eEEEEECCCCc
Confidence 457777766532 1 22 3333222234576531 111 111 2 245678887 5 555 49999999876
Q ss_pred E
Q 016751 349 F 349 (383)
Q Consensus 349 ~ 349 (383)
.
T Consensus 316 ~ 316 (394)
T PRK11138 316 E 316 (394)
T ss_pred E
Confidence 3
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=88.36 E-value=1.8 Score=27.54 Aligned_cols=40 Identities=8% Similarity=0.113 Sum_probs=26.4
Q ss_pred CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCC
Q 016751 218 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLS 259 (383)
Q Consensus 218 ~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~ 259 (383)
++.+|..++... ........+.+||+.+.+|+.+ .+| ..+
T Consensus 1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~W~~~~~~P-~~R 41 (49)
T PF13415_consen 1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNTWTRIGDLP-PPR 41 (49)
T ss_pred CCEEEEECCcCC-CCCCEecCEEEEECCCCEEEECCCCC-CCc
Confidence 356666665431 1123346889999999999998 666 544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=87.36 E-value=26 Score=33.06 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=59.3
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELW 291 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW 291 (383)
++..+|.+|.....+ .+.+||..+. .|.. +.+ . ....+..+|+|++.... ..+..+
T Consensus 237 p~~~~~~vy~~~~~g---------~l~a~d~~tG~~~W~~-~~~-~------~~~p~~~~~~vyv~~~~-----G~l~~~ 294 (377)
T TIGR03300 237 PVVDGGQVYAVSYQG---------RVAALDLRSGRVLWKR-DAS-S------YQGPAVDDNRLYVTDAD-----GVVVAL 294 (377)
T ss_pred cEEECCEEEEEEcCC---------EEEEEECCCCcEEEee-ccC-C------ccCceEeCCEEEEECCC-----CeEEEE
Confidence 677899999877655 8999998754 4543 222 1 11233456666665421 234333
Q ss_pred EeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE-EEEEec
Q 016751 292 VMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK-CIGVHL 356 (383)
Q Consensus 292 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~-~v~~~~ 356 (383)
..+. .+..|... .+.... ...|+. .++.||+. . .++ .++++|.++++.. ++.+.+
T Consensus 295 d~~t--G~~~W~~~-~~~~~~-~ssp~i--~g~~l~~~--~-~~G-~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 295 DRRS--GSELWKND-ELKYRQ-LTAPAV--VGGYLVVG--D-FEG-YLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred ECCC--CcEEEccc-cccCCc-cccCEE--ECCEEEEE--e-CCC-EEEEEECCCCCEEEEEEcCC
Confidence 3332 12345542 111111 122222 34567776 5 555 4999999988764 344433
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=85.61 E-value=1.3 Score=28.00 Aligned_cols=22 Identities=9% Similarity=0.239 Sum_probs=14.3
Q ss_pred CceEEEEccCccceeecCCCCC
Q 016751 132 RSLIYLWNPLIKKYMTLPRPSL 153 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~~~ 153 (383)
...++++|+.+++|.++|++|.
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp ---EEEEETTTTEEEE--SS--
T ss_pred cCCEEEEECCCCEEEECCCCCC
Confidence 4478999999999999988763
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.24 E-value=36 Score=32.60 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=39.1
Q ss_pred CceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEE
Q 016751 263 ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIR 329 (383)
Q Consensus 263 ~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~ 329 (383)
+...|+++.|.=.++.+... ..+++|...+. -..-...+.+++.. ++..+++..+|.-+++
T Consensus 382 Witsla~i~~sdL~asGS~~---G~vrLW~i~~g--~r~i~~l~~ls~~G-fVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSWS---GCVRLWKIEDG--LRAINLLYSLSLVG-FVNSLAFSNSGKRIVA 442 (479)
T ss_pred ceeeeEecccCceEEecCCC---CceEEEEecCC--ccccceeeeccccc-EEEEEEEccCCCEEEE
Confidence 34567777764444444433 59999999973 23456667777655 5666777778875555
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=85.14 E-value=0.66 Score=44.60 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=62.0
Q ss_pred ceeeecc---CCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe----CCCCCCCCCCCc
Q 016751 192 SWKNIAY---GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDAD 264 (383)
Q Consensus 192 ~W~~~~~---~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i----~lP~~~~~~~~~ 264 (383)
.||.+.. ..|.+++.++ +|.+.-.+-.+++.+ ..-.+.+.+||..+++|..- .+| ..+.
T Consensus 18 rWrrV~~~tGPvPrpRHGHR-----AVaikELiviFGGGN----EGiiDELHvYNTatnqWf~PavrGDiP-pgcA---- 83 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHR-----AVAIKELIVIFGGGN----EGIIDELHVYNTATNQWFAPAVRGDIP-PGCA---- 83 (830)
T ss_pred ceEEEecccCCCCCccccch-----heeeeeeEEEecCCc----ccchhhhhhhccccceeecchhcCCCC-Cchh----
Confidence 6887762 4455565555 788888777766654 33346789999999999764 455 4441
Q ss_pred eEEEEeC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEE
Q 016751 265 KYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLY 306 (383)
Q Consensus 265 ~~l~~~~-g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~ 306 (383)
.+-.+++ .+|+++++.-+.+-...++++|+.. ..+|.++.
T Consensus 84 A~GfvcdGtrilvFGGMvEYGkYsNdLYELQas--RWeWkrlk 124 (830)
T KOG4152|consen 84 AFGFVCDGTRILVFGGMVEYGKYSNDLYELQAS--RWEWKRLK 124 (830)
T ss_pred hcceEecCceEEEEccEeeeccccchHHHhhhh--hhhHhhcC
Confidence 2233444 5888887654333355667777753 35666643
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.00 E-value=1.7 Score=41.93 Aligned_cols=136 Identities=14% Similarity=0.056 Sum_probs=79.4
Q ss_pred EEEccCccceeecCCCCCCC----------CceeEEEeccCCCCCCeEEEEEEe----cCeEEEEEcCCCceeeecc--C
Q 016751 136 YLWNPLIKKYMTLPRPSLNP----------RYLGFGVNSVSGHLDDFKVVTISV----NADAEVYSLRSNSWKNIAY--G 199 (383)
Q Consensus 136 ~v~NP~t~~~~~LP~~~~~~----------~~~~~g~d~~~~~~~~ykVv~~~~----~~~~~vyss~t~~W~~~~~--~ 199 (383)
..-.|.+-.|.++|+..... ...-+++++. +.--.+..... ...+++|+-+.+.|..+.. .
T Consensus 232 i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~---~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~ 308 (723)
T KOG2437|consen 232 ISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQ---TECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTE 308 (723)
T ss_pred hhcccccccccccCchhhcccccccCccccCcceEEEeCC---CcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCC
Confidence 33456677777777655321 1134455543 32222222222 4577999999999998763 3
Q ss_pred CCceeeeccCcccceeEE--CceEEEEEeeccC---CCCCCCcEEEEEECCCCeeeEeCCCCCCCCCC----CceEEEEe
Q 016751 200 FPRSIEINRSHINSSVFL--NGSVHWCARFSCY---HDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDD----ADKYLNVF 270 (383)
Q Consensus 200 ~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~---~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~----~~~~l~~~ 270 (383)
.|..+..++ .|.- .-+||-++..-.. ...+....+..||..+++|..+..- ...+.+ +...+++.
T Consensus 309 ~PG~RsCHR-----MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d-t~~dGGP~~vfDHqM~Vd 382 (723)
T KOG2437|consen 309 GPGARSCHR-----MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED-TAADGGPKLVFDHQMCVD 382 (723)
T ss_pred CCcchhhhh-----hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccc-ccccCCcceeecceeeEe
Confidence 465555544 2322 2377777654211 1234557899999999999999665 443222 45566666
Q ss_pred CCe--EEEEEec
Q 016751 271 DGY--LCVFATI 280 (383)
Q Consensus 271 ~g~--L~~v~~~ 280 (383)
+.+ ||+.++.
T Consensus 383 ~~k~~iyVfGGr 394 (723)
T KOG2437|consen 383 SEKHMIYVFGGR 394 (723)
T ss_pred cCcceEEEecCe
Confidence 654 7887764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=83.18 E-value=31 Score=30.27 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=67.6
Q ss_pred eeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEE--eCCeEEEEEecCCCCccEEE
Q 016751 214 SVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV--FDGYLCVFATIPNNTFRSYE 289 (383)
Q Consensus 214 ~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~--~~g~L~~v~~~~~~~~~~l~ 289 (383)
+++. +|.|||..... ..|..+|+.+.....+.+| .. .-++. -+|+|++..... +.
T Consensus 5 p~~d~~~g~l~~~D~~~--------~~i~~~~~~~~~~~~~~~~-~~------~G~~~~~~~g~l~v~~~~~------~~ 63 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG--------GRIYRVDPDTGEVEVIDLP-GP------NGMAFDRPDGRLYVADSGG------IA 63 (246)
T ss_dssp EEEETTTTEEEEEETTT--------TEEEEEETTTTEEEEEESS-SE------EEEEEECTTSEEEEEETTC------EE
T ss_pred eEEECCCCEEEEEEcCC--------CEEEEEECCCCeEEEEecC-CC------ceEEEEccCCEEEEEEcCc------eE
Confidence 4555 69999987655 6999999999999888877 41 22233 357777765422 22
Q ss_pred EEEeccCCCCCCeEEEEEecCC--Cc-eeEEEEEeeCCcEEEEEEeeCC--------ceEEEEEeCCCCeEEEE
Q 016751 290 LWVMKEYGLTESWTKLYTIEKP--QR-IWWPLGFTERGKIFIRGECRHG--------GYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 290 iW~l~~~~~~~~W~~~~~i~~~--~~-~~~~~~~~~~g~i~~~~~~~~~--------~~~~~~yd~~t~~~~~v 352 (383)
+. +. ...+++.....+.. .. ...-+++..+|.+|+. .... + .++.++++ ++.+.+
T Consensus 64 ~~--d~--~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t--~~~~~~~~~~~~g-~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 64 VV--DP--DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVT--DSGGGGASGIDPG-SVYRIDPD-GKVTVV 129 (246)
T ss_dssp EE--ET--TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEE--EECCBCTTCGGSE-EEEEEETT-SEEEEE
T ss_pred EE--ec--CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEE--ecCCCcccccccc-ceEEECCC-CeEEEE
Confidence 22 21 23567777776422 11 3444667778888887 3111 3 48999999 666555
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.07 E-value=28 Score=31.79 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=51.8
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCCCCceEEEEeCCeE---EEEEecCCCCccEEE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYL---CVFATIPNNTFRSYE 289 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L---~~v~~~~~~~~~~l~ 289 (383)
+|.++|-.-.-+. ..+.|..||+.+..= ..+.-| ... .......+-+ .++.+.++ ..+.
T Consensus 48 avAVs~~~~aSGs--------sDetI~IYDm~k~~qlg~ll~H-ags-----itaL~F~~~~S~shLlS~sdD---G~i~ 110 (362)
T KOG0294|consen 48 ALAVSGPYVASGS--------SDETIHIYDMRKRKQLGILLSH-AGS-----ITALKFYPPLSKSHLLSGSDD---GHII 110 (362)
T ss_pred EEEecceeEeccC--------CCCcEEEEeccchhhhcceecc-ccc-----eEEEEecCCcchhheeeecCC---CcEE
Confidence 7888885433332 357999999976543 333323 111 1111112222 44555554 6889
Q ss_pred EEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEE
Q 016751 290 LWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIR 329 (383)
Q Consensus 290 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~ 329 (383)
||..+. |..++.+....-...-+.++..|++-+.
T Consensus 111 iw~~~~------W~~~~slK~H~~~Vt~lsiHPS~KLALs 144 (362)
T KOG0294|consen 111 IWRVGS------WELLKSLKAHKGQVTDLSIHPSGKLALS 144 (362)
T ss_pred EEEcCC------eEEeeeecccccccceeEecCCCceEEE
Confidence 998765 8888887654322444556666666555
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.64 E-value=41 Score=31.20 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=81.2
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEe----CC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV----MM 254 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i----~l 254 (383)
...+.+|+..++.=.... ..-.....+.... ...-||+ .|.++.-. +.-.++.||....++..+ .+
T Consensus 166 ~Dri~~y~~~dg~L~~~~-~~~v~~G~GPRHi--~FHpn~k~aY~v~EL~------stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 166 TDRIFLYDLDDGKLTPAD-PAEVKPGAGPRHI--VFHPNGKYAYLVNELN------STVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred CceEEEEEcccCcccccc-ccccCCCCCcceE--EEcCCCcEEEEEeccC------CEEEEEEEcCCCceEEEeeeeccC
Confidence 779999999987655444 1111111111110 2233454 46665544 223445555555788766 56
Q ss_pred CCCCCCCC-CceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEe
Q 016751 255 PYDLSTDD-ADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGEC 332 (383)
Q Consensus 255 P~~~~~~~-~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~ 332 (383)
| ..-... ....+-.. +|+...+..... ..+.+..++..+ +.=..+...+......+-+.+..+|+++++ .
T Consensus 237 P-~dF~g~~~~aaIhis~dGrFLYasNRg~---dsI~~f~V~~~~--g~L~~~~~~~teg~~PR~F~i~~~g~~Lia--a 308 (346)
T COG2706 237 P-EDFTGTNWAAAIHISPDGRFLYASNRGH---DSIAVFSVDPDG--GKLELVGITPTEGQFPRDFNINPSGRFLIA--A 308 (346)
T ss_pred c-cccCCCCceeEEEECCCCCEEEEecCCC---CeEEEEEEcCCC--CEEEEEEEeccCCcCCccceeCCCCCEEEE--E
Confidence 6 444332 23333333 455544444333 345555555433 333344444433323455667777777766 4
Q ss_pred eCCce--EEEEEeCCCCeEEEEE
Q 016751 333 RHGGY--GLLVYNPHSDTFKCIG 353 (383)
Q Consensus 333 ~~~~~--~~~~yd~~t~~~~~v~ 353 (383)
..+.. .++.-|.+|+++..+.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 309 NQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred ccCCCcEEEEEEcCCCceEEecc
Confidence 23322 5777799999998874
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.12 E-value=32 Score=32.01 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=64.5
Q ss_pred CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC-----CCC---CceEEEEe---CCeEEEEEecCCC---
Q 016751 218 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-----TDD---ADKYLNVF---DGYLCVFATIPNN--- 283 (383)
Q Consensus 218 ~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~-----~~~---~~~~l~~~---~g~L~~v~~~~~~--- 283 (383)
+|.+||....+ .|...|++.+.-.... |+... .+. ....+..+ .|+||+.......
T Consensus 195 ~~~~~F~Sy~G---------~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 195 GGRLYFVSYEG---------NVYSADLSGDSAKFGK-PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp TTEEEEEBTTS---------EEEEEEETTSSEEEEE-EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred CCeEEEEecCC---------EEEEEeccCCcccccC-cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 36788887766 8999998877533321 11111 011 11222322 4799887643321
Q ss_pred CccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc--EEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 284 TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK--IFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 284 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~--i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
....-+||+++-. .=.++.++++.. ....+++..+.+ +|-. ...++ .+++||..|++...
T Consensus 265 KdpgteVWv~D~~----t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~--~~~~~-~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 265 KDPGTEVWVYDLK----THKRVARIPLEH-PIDSIAVSQDDKPLLYAL--SAGDG-TLDVYDAATGKLVR 326 (342)
T ss_dssp TS-EEEEEEEETT----TTEEEEEEEEEE-EESEEEEESSSS-EEEEE--ETTTT-EEEEEETTT--EEE
T ss_pred cCCceEEEEEECC----CCeEEEEEeCCC-ccceEEEccCCCcEEEEE--cCCCC-eEEEEeCcCCcEEe
Confidence 2456799999862 226677777653 233567776664 4444 32334 59999999997654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=82.03 E-value=45 Score=31.22 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=87.5
Q ss_pred eeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc--eeeec-cCCCceeeeccCcccceeEECc-eEEEEEeeccCCCC
Q 016751 158 LGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS--WKNIA-YGFPRSIEINRSHINSSVFLNG-SVHWCARFSCYHDN 233 (383)
Q Consensus 158 ~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~--W~~~~-~~~p~~~~~~~~~~~~~v~~~G-~lYw~~~~~~~~~~ 233 (383)
..+.++|. +.|-++.-.....+.+|+...+. ..... ..+|.+..... . .+.-+| .+|......
T Consensus 147 H~v~~~pd----g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh-~---~f~pdg~~~Yv~~e~s----- 213 (345)
T PF10282_consen 147 HQVVFSPD----GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH-L---AFSPDGKYAYVVNELS----- 213 (345)
T ss_dssp EEEEE-TT----SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE-E---EE-TTSSEEEEEETTT-----
T ss_pred eeEEECCC----CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE-E---EEcCCcCEEEEecCCC-----
Confidence 55666664 33333322126789999997765 53322 01221111000 0 222255 566665544
Q ss_pred CCCcEEEEEECC--CCeeeEe----CCCCCCCCCC-CceEEEEe-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEE
Q 016751 234 SCPWLIVSFDFA--KEIFQTV----MMPYDLSTDD-ADKYLNVF-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTK 304 (383)
Q Consensus 234 ~~~~~il~fD~~--~~~~~~i----~lP~~~~~~~-~~~~l~~~-~g~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~ 304 (383)
..|.+|+.. +..++.+ .+| ...... ....+... +|+ ||+..... ..+.++.++.. .+.-+.
T Consensus 214 ---~~v~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~i~ispdg~~lyvsnr~~----~sI~vf~~d~~--~g~l~~ 283 (345)
T PF10282_consen 214 ---NTVSVFDYDPSDGSLTEIQTISTLP-EGFTGENAPAEIAISPDGRFLYVSNRGS----NSISVFDLDPA--TGTLTL 283 (345)
T ss_dssp ---TEEEEEEEETTTTEEEEEEEEESCE-TTSCSSSSEEEEEE-TTSSEEEEEECTT----TEEEEEEECTT--TTTEEE
T ss_pred ---CcEEEEeecccCCceeEEEEeeecc-ccccccCCceeEEEecCCCEEEEEeccC----CEEEEEEEecC--CCceEE
Confidence 577777776 6666554 455 322221 23445555 355 45544443 58888888653 244566
Q ss_pred EEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEE--eCCCCeEEEEE
Q 016751 305 LYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVY--NPHSDTFKCIG 353 (383)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~y--d~~t~~~~~v~ 353 (383)
+..++......+-+.+..+|+.+++ .......+.+| |.+|++++.+.
T Consensus 284 ~~~~~~~G~~Pr~~~~s~~g~~l~V--a~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 284 VQTVPTGGKFPRHFAFSPDGRYLYV--ANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEESSSSEEEEEE-TTSSEEEE--EETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCccEEEEeCCCCEEEE--EecCCCeEEEEEEeCCCCcEEEec
Confidence 6666653323555666778876555 31232235555 77899998874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=81.50 E-value=34 Score=29.54 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=72.1
Q ss_pred eEEEEEcCCC--ceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCe--eeEeCCCCC
Q 016751 182 DAEVYSLRSN--SWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTVMMPYD 257 (383)
Q Consensus 182 ~~~vyss~t~--~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~--~~~i~lP~~ 257 (383)
.+..++..++ -|+.-- .......... .+.-+|.+|..... ..+.++|..+.+ |+. .++ .
T Consensus 4 ~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-----~~~~~~~v~~~~~~---------~~l~~~d~~tG~~~W~~-~~~-~ 66 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL-GPGIGGPVAT-----AVPDGGRVYVASGD---------GNLYALDAKTGKVLWRF-DLP-G 66 (238)
T ss_dssp EEEEEETTTTEEEEEEEC-SSSCSSEEET-----EEEETTEEEEEETT---------SEEEEEETTTSEEEEEE-ECS-S
T ss_pred EEEEEECCCCCEEEEEEC-CCCCCCccce-----EEEeCCEEEEEcCC---------CEEEEEECCCCCEEEEe-ecc-c
Confidence 4667777665 587633 1111111100 34578888887544 489999986554 433 335 3
Q ss_pred CCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEE-EEEecCCCceeEEEEEeeCCcEEEEEEeeCCc
Q 016751 258 LSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTK-LYTIEKPQRIWWPLGFTERGKIFIRGECRHGG 336 (383)
Q Consensus 258 ~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 336 (383)
... ......++++++... . . .++.++....+..|.. ...-+.............++.+++. . ..+
T Consensus 67 ~~~----~~~~~~~~~v~v~~~--~---~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g 132 (238)
T PF13360_consen 67 PIS----GAPVVDGGRVYVGTS--D---G--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG--T-SSG 132 (238)
T ss_dssp CGG----SGEEEETTEEEEEET--T---S--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE--E-TCS
T ss_pred ccc----ceeeecccccccccc--e---e--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEE--e-ccC
Confidence 321 114667788877762 1 2 4555552223457874 3332222111111112224456665 4 455
Q ss_pred eEEEEEeCCCCeEEE
Q 016751 337 YGLLVYNPHSDTFKC 351 (383)
Q Consensus 337 ~~~~~yd~~t~~~~~ 351 (383)
.++++|++|++...
T Consensus 133 -~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 133 -KLVALDPKTGKLLW 146 (238)
T ss_dssp -EEEEEETTTTEEEE
T ss_pred -cEEEEecCCCcEEE
Confidence 49999999998643
|
... |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.34 E-value=1 Score=42.46 Aligned_cols=36 Identities=31% Similarity=0.655 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCC
Q 016751 24 FRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTS 59 (383)
Q Consensus 24 ~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s 59 (383)
-.||.|++..||+-|-.+++.|++.+|+.|+-+.-+
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 469999999999999999999999999999998765
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=80.99 E-value=52 Score=31.27 Aligned_cols=218 Identities=12% Similarity=0.085 Sum_probs=86.5
Q ss_pred ccCc-eEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 118 SCNG-VLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 118 s~~G-ll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
..+| .|++....++..++|+.|-.|++-.+|-..+....+ +....+. +=.++.+.....+...+++|.+=+.+
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~-----~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPD-----DRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TT-----SSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecC-----CCeEEEEECCCeEEEEECCcCcEEEE
Confidence 4445 355544335678999999999999999876533222 2112222 12222232233455555555544444
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccC--------------CCCCCCcEEEEEECCCCeeeEe-CCCCCCCCC
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCY--------------HDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTD 261 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~--------------~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~ 261 (383)
- ..|......... .+-.++..+.-...... ........|+..|+.+.....+ .-. .-.
T Consensus 118 y-~~p~~~~g~gt~---v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wl-- 190 (386)
T PF14583_consen 118 Y-EVPDDWKGYGTW---VANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWL-- 190 (386)
T ss_dssp E-E--TTEEEEEEE---EE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-E--
T ss_pred E-ECCcccccccce---eeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccc--
Confidence 3 444333321111 11223333322211100 0012347899999999888776 322 111
Q ss_pred CCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEeeCC-ceEE
Q 016751 262 DADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHG-GYGL 339 (383)
Q Consensus 262 ~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~-~~~~ 339 (383)
.+....-.+..|.+.+.-..-..-.-+||.++..+. +.|......+... .-..... .+| .|++....+.+ ...+
T Consensus 191 -gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e~-~gHEfw~-~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 191 -GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGES-VGHEFWV-PDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp -EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEE-EEEEEE--TTSS-EEEEEEETTT--EEE
T ss_pred -cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCcc-ccccccc-CCCCEEEEEeecCCCCceEE
Confidence 112222234455454332110112347999997653 4455544443321 1222333 345 55554222112 1269
Q ss_pred EEEeCCCCeEEEE
Q 016751 340 LVYNPHSDTFKCI 352 (383)
Q Consensus 340 ~~yd~~t~~~~~v 352 (383)
..||++|.+-+.+
T Consensus 267 ~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 267 AGYDPDTGERRRL 279 (386)
T ss_dssp EEE-TTT--EEEE
T ss_pred EeeCCCCCCceEE
Confidence 9999999876654
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=80.10 E-value=2.2 Score=27.10 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=22.2
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeec
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEIN 207 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~ 207 (383)
...+++|+..+++|+.++ ++|.++..+
T Consensus 18 ~nd~~~~~~~~~~W~~~~-~~P~~R~~h 44 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIG-DLPPPRSGH 44 (49)
T ss_pred ecCEEEEECCCCEEEECC-CCCCCccce
Confidence 458899999999999997 787776544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 6e-07
Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 3/123 (2%)
Query: 25 RLPEDVMIDIFLRLEVKNLARL-RCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGI 83
LPE +++ + L L + R VC W L+ + Q P
Sbjct: 53 ELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEE-- 110
Query: 84 SPSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIK 143
+ FY + L +P L V D + + + +K
Sbjct: 111 RDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNGVEFTQDDSVK 170
Query: 144 KYM 146
KY
Sbjct: 171 KYF 173
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-06
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 25 RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTL 56
LP+++++ IF L + L ++ VCK W L
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 25 RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGIS 84
LP+++++ IF L + L ++ VCK W L + ++ + L+ + +N P + +S
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ-TLDLTGKNLHPDVTGRLLS 69
Query: 85 PSYLGFYSTKCKEFEDLCDPPFRTQLADLDVVGSC 119
+ F + + L + ++ +D+ S
Sbjct: 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV 104
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 5e-05
Identities = 62/430 (14%), Positives = 118/430 (27%), Gaps = 124/430 (28%)
Query: 6 MHTHMEKICGDREMKCSSFRLPEDVMIDIFLRL-EVKNLAR----LRCVC--KSWN---- 54
+ ++ R S+ +L + RL + K L V K+WN
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 55 ---TLLTS--KTFVEIHLNQSMRNPRPLLFRHGISPSY-LGFYSTKC--KEFEDL----- 101
LLT+ K + + + ++P K +DL
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVL 323
Query: 102 -CDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPL----IKKYMTLPRPSLN-- 154
+P L ++ +G W+ K T+ SLN
Sbjct: 324 TTNP-----RR-LSIIAE------SIRDGLAT-----WDNWKHVNCDKLTTIIESSLNVL 366
Query: 155 -PRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINS 213
P D V S + + SL W ++ + +N+ H S
Sbjct: 367 EPAEY-------RKMFDRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVV-VNKLHKYS 415
Query: 214 SVFLNG-----SVHWCARFSCYHDNSCPW---------LIVSFDFAKEIFQTVMMPYDLS 259
V S+ S Y + ++ ++ K DL
Sbjct: 416 LVEKQPKESTISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKTFD-----SDDLI 465
Query: 260 TDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLG 319
D+Y F ++ + L ++ + ++ L
Sbjct: 466 PPYLDQY---FYSHI------------GHHLKNIEHPERMTLFRMVF-----------LD 499
Query: 320 FTERGKIFIRGECRHGGYGLLVYNPHSDTF-------KCIGVHLPYYAIQVLNFVESIIE 372
F F+ + RH +T I + P Y +++N + +
Sbjct: 500 FR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLP 553
Query: 373 PVSQSLILSR 382
+ ++LI S+
Sbjct: 554 KIEENLICSK 563
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 2e-04
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 25 RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTL 56
RLP DV + I L +L +L WN
Sbjct: 7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 383 | |||
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.67 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.67 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.65 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.64 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.64 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.63 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.58 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.53 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.53 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.51 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.49 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.45 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.42 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.33 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 99.23 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 99.1 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 99.05 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.99 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.96 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.92 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.77 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 98.68 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.66 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.76 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 97.59 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 96.99 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.76 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 96.63 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 96.45 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 95.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.85 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 95.84 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 95.67 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 95.21 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 95.07 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 94.91 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 94.77 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 94.61 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 94.52 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 94.5 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 94.48 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 94.45 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 94.4 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 94.3 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 94.2 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 93.98 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 93.65 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 93.53 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 93.52 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 93.3 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 93.22 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 93.13 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 93.05 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 93.04 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 92.93 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 92.71 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 92.68 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 92.51 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 92.42 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 92.36 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 92.03 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 91.93 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 91.62 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 91.33 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 90.7 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 90.63 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 90.15 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 89.54 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 89.49 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 89.43 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 89.34 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 89.11 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 88.41 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 87.89 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 87.83 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 87.63 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 87.62 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 87.56 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 87.53 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 87.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 87.35 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 87.2 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 86.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 86.77 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 86.71 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 86.65 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 86.61 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 86.53 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 86.31 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 85.57 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 85.52 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 85.51 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 85.43 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 85.28 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 85.23 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 85.12 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 85.08 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 84.67 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 84.55 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 83.76 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 83.76 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 83.31 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 82.85 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 82.35 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 81.97 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 81.9 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 81.71 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 81.62 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 81.27 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 80.98 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 80.89 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 80.89 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 80.78 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 80.3 |
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-14 Score=129.69 Aligned_cols=238 Identities=12% Similarity=0.094 Sum_probs=158.8
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecC-----C----CCceEEEEccCccceeecCCCCCCCCcee
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNG-----S----DRSLIYLWNPLIKKYMTLPRPSLNPRYLG 159 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~-----~----~~~~~~v~NP~t~~~~~LP~~~~~~~~~~ 159 (383)
..|++....|...+.|.. ........+..+|.|++..+. . ....++++||.+++|..+|+++..+...+
T Consensus 16 ~~yd~~~~~W~~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 93 (315)
T 4asc_A 16 VAYDPAANECYCASLSSQ--VPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFG 93 (315)
T ss_dssp EEEETTTTEEEEEECCCC--SCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCE
T ss_pred EEECCCCCeEecCCCCCC--CCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhcee
Confidence 578888888865444331 122334455567777655431 0 11248999999999999999887653322
Q ss_pred EEEeccCCCCCCeEEEEEEe---------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccC
Q 016751 160 FGVNSVSGHLDDFKVVTISV---------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCY 230 (383)
Q Consensus 160 ~g~d~~~~~~~~ykVv~~~~---------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~ 230 (383)
.... .+ +++.+.. ...+++|+..+++|+.++ .+|.++..+. ++.++|.+|.+++..
T Consensus 94 ~~~~-----~~--~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~-- 158 (315)
T 4asc_A 94 LGEA-----LN--SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPYVVYGHT-----VLSHMDLVYVIGGKG-- 158 (315)
T ss_dssp EEEE-----TT--EEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSSCCBSCE-----EEEETTEEEEECCBC--
T ss_pred EEEE-----CC--EEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCCccccee-----EEEECCEEEEEeCCC--
Confidence 2211 11 2222211 457999999999999999 7887765443 688999999998863
Q ss_pred CCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 016751 231 HDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 309 (383)
Q Consensus 231 ~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 309 (383)
.+......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++.... ...-.+|.++-. +++|+.+..++
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~--~~~W~~~~~~p 231 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQ-TAR---SLFGATVHDGRIIVAAGVTDT-GLTSSAEVYSIT--DNKWAPFEAFP 231 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCS-SCC---BSCEEEEETTEEEEEEEECSS-SEEEEEEEEETT--TTEEEEECCCS
T ss_pred CCCcccceEEEEeCCCCeEEECCCCC-Cch---hceEEEEECCEEEEEeccCCC-CccceEEEEECC--CCeEEECCCCC
Confidence 2233456899999999999998 666 554 456678889999999987652 124467888753 46899988777
Q ss_pred CCCceeEEEEEeeCCcEEEEEEeeC-----C------ceEEEEEeCCCCeEEEE
Q 016751 310 KPQRIWWPLGFTERGKIFIRGECRH-----G------GYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 310 ~~~~~~~~~~~~~~g~i~~~~~~~~-----~------~~~~~~yd~~t~~~~~v 352 (383)
... ....++..++.||+.|-... + ...+..||+++++|+.+
T Consensus 232 ~~r--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 232 QER--SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp SCC--BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred Ccc--cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 654 22223334678888831100 0 12589999999999998
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-14 Score=129.22 Aligned_cols=236 Identities=10% Similarity=0.105 Sum_probs=158.7
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCC---------CCceEEEEccCccceeecCCCCCCCCcee
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS---------DRSLIYLWNPLIKKYMTLPRPSLNPRYLG 159 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~---------~~~~~~v~NP~t~~~~~LP~~~~~~~~~~ 159 (383)
..|++....|...+.+... .......+..+|.|++..+.. ....++++||.+++|..+|+++..+...+
T Consensus 27 ~~yd~~~~~W~~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 27 VAYDPMENECYLTALAEQI--PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEETTTTEEEEEEECTTS--CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred EEECCCCCceecccCCccC--CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 5788888888764443211 223344566677776665410 01238899999999999998887654422
Q ss_pred EEEeccCCCCCCeEEEEEEe--------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCC
Q 016751 160 FGVNSVSGHLDDFKVVTISV--------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYH 231 (383)
Q Consensus 160 ~g~d~~~~~~~~ykVv~~~~--------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~ 231 (383)
.... .+ +++.+.. ...+++|++.+++|+.++ .+|.++..+. ++.++|.+|.+++.. .
T Consensus 105 ~~~~-----~~--~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~--~ 169 (318)
T 2woz_A 105 LGEV-----DD--KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHN-----VISHNGMIYCLGGKT--D 169 (318)
T ss_dssp EEEE-----TT--EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCE-----EEEETTEEEEECCEE--S
T ss_pred eEEE-----CC--EEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccE-----EEEECCEEEEEcCCC--C
Confidence 2221 11 2222221 347899999999999998 8887765443 678999999998864 2
Q ss_pred CCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecC
Q 016751 232 DNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEK 310 (383)
Q Consensus 232 ~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 310 (383)
+......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++.... ...-.+|.++- .+++|+++..++.
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~--~~~~W~~~~~~p~ 242 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMK-TPR---SMFGVAIHKGKIVIAGGVTED-GLSASVEAFDL--KTNKWEVMTEFPQ 242 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEEEEEETT-EEEEEEEEEET--TTCCEEECCCCSS
T ss_pred CCCccceEEEEcCCCCEEEECCCCC-CCc---ccceEEEECCEEEEEcCcCCC-CccceEEEEEC--CCCeEEECCCCCC
Confidence 223346799999999999998 666 544 445678889999999986542 12346777764 2467999877776
Q ss_pred CCceeEEEEEeeCCcEEEEEEeeCC-------------ceEEEEEeCCCCeEEEE
Q 016751 311 PQRIWWPLGFTERGKIFIRGECRHG-------------GYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 311 ~~~~~~~~~~~~~g~i~~~~~~~~~-------------~~~~~~yd~~t~~~~~v 352 (383)
.. ....++..++.||+. .+.. ...+..||+++++|+++
T Consensus 243 ~r--~~~~~~~~~~~i~v~--GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 243 ER--SSISLVSLAGSLYAI--GGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CC--BSCEEEEETTEEEEE--CCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred cc--cceEEEEECCEEEEE--CCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 54 222233346788888 3211 12599999999999998
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-13 Score=126.49 Aligned_cols=237 Identities=12% Similarity=0.049 Sum_probs=158.8
Q ss_pred eeecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecC--CCCceEEEEccCccceeecCCCCCCCCceeEEEecc
Q 016751 88 LGFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNG--SDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSV 165 (383)
Q Consensus 88 ~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~--~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~ 165 (383)
...|++....|..+.....+ ......+..+|.|++..+. .....++++||.+++|..+|+++..+...+....
T Consensus 26 ~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 100 (306)
T 3ii7_A 26 CRYFNPKDYSWTDIRCPFEK---RRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-- 100 (306)
T ss_dssp EEEEETTTTEEEECCCCSCC---CBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--
T ss_pred EEEecCCCCCEecCCCCCcc---cceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--
Confidence 45788888888877543222 1222334457777665432 1245789999999999999988876544222211
Q ss_pred CCCCCCeEEEEEEe-------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCC---
Q 016751 166 SGHLDDFKVVTISV-------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSC--- 235 (383)
Q Consensus 166 ~~~~~~ykVv~~~~-------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~--- 235 (383)
.+ +++.+.. ...+++|++.+++|+.++ .+|.++..+. ++.++|.+|.+++.. .....
T Consensus 101 ---~~--~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~--~~~~~~~~ 167 (306)
T 3ii7_A 101 ---EG--KIYTSGGSEVGNSALYLFECYDTRTESWHTKP-SMLTQRCSHG-----MVEANGLIYVCGGSL--GNNVSGRV 167 (306)
T ss_dssp ---TT--EEEEECCBBTTBSCCCCEEEEETTTTEEEEEC-CCSSCCBSCE-----EEEETTEEEEECCEE--SCTTTCEE
T ss_pred ---CC--EEEEECCCCCCCcEeeeEEEEeCCCCceEeCC-CCcCCcceeE-----EEEECCEEEEECCCC--CCCCcccc
Confidence 11 2333321 457999999999999998 8887765443 688999999998865 11111
Q ss_pred CcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 016751 236 PWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI 314 (383)
Q Consensus 236 ~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 314 (383)
...+..||+.+++|+.+ ++| ..+ ....++..+|+|+++++.... ...-.+|.++-. .++|+.+..++...
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~--~~~W~~~~~~p~~r-- 238 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMI-EAR---KNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIK--LNEWKMVSPMPWKG-- 238 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEECCEETT-EEBCCEEEEETT--TTEEEECCCCSCCB--
T ss_pred cceEEEeCCCCCeEEECCCcc-chh---hcceEEEECCEEEEEeCCCCC-CCCceEEEeeCC--CCcEEECCCCCCCc--
Confidence 56799999999999998 666 544 456778889999999876541 112356777642 46799987776653
Q ss_pred eEEEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEE
Q 016751 315 WWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 315 ~~~~~~~~~g~i~~~~~~~~~----~~~~~~yd~~t~~~~~v~ 353 (383)
....++..++.||+. .+.+ ...+..||+++++|+.+.
T Consensus 239 ~~~~~~~~~~~i~v~--GG~~~~~~~~~~~~yd~~~~~W~~~~ 279 (306)
T 3ii7_A 239 VTVKCAAVGSIVYVL--AGFQGVGRLGHILEYNTETDKWVANS 279 (306)
T ss_dssp SCCEEEEETTEEEEE--ECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred cceeEEEECCEEEEE--eCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence 222233346788888 4211 126999999999999984
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-13 Score=126.10 Aligned_cols=236 Identities=12% Similarity=0.186 Sum_probs=156.1
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCC---CCceEEEEccCccceeecCCCCCCCCceeEEEecc
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS---DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSV 165 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~---~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~ 165 (383)
..|+.....|..+.....+ ......+..+|.|++..+.. ....++++||.+++|..+|+++..+...+...-
T Consensus 33 ~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 107 (302)
T 2xn4_A 33 ECYDFKEERWHQVAELPSR---RCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-- 107 (302)
T ss_dssp EEEETTTTEEEEECCCSSC---CBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred EEEcCcCCcEeEcccCCcc---cccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence 4677777777776422111 11222344577776654321 235789999999999999998877644222221
Q ss_pred CCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCC-CCCcE
Q 016751 166 SGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDN-SCPWL 238 (383)
Q Consensus 166 ~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~-~~~~~ 238 (383)
.+ +++.+.. ...+++|+..+++|+.++ .+|.++..+. ++.++|.+|.+++.. ... .....
T Consensus 108 ---~~--~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~--~~~~~~~~~ 174 (302)
T 2xn4_A 108 ---NG--LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-PMNTRRSSVG-----VGVVGGLLYAVGGYD--VASRQCLST 174 (302)
T ss_dssp ---TT--EEEEEEEECSSCEEEEEEEEETTTTEEEEEC-CCSSCCBSCE-----EEEETTEEEEECCEE--TTTTEECCC
T ss_pred ---CC--EEEEEcCCCCCccCceEEEEeCCCCeEeecC-CCCCcccCce-----EEEECCEEEEEeCCC--CCCCccccE
Confidence 12 2222221 357999999999999998 7877655433 678999999998765 110 12457
Q ss_pred EEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEE
Q 016751 239 IVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWP 317 (383)
Q Consensus 239 il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 317 (383)
+..||+.+++|+.+ ++| ..+ ....++..+|+|+++++.... ...-.+|.++-. .+.|+++..++... ...
T Consensus 175 ~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~--~~~W~~~~~~~~~r--~~~ 245 (302)
T 2xn4_A 175 VECYNATTNEWTYIAEMS-TRR---SGAGVGVLNNLLYAVGGHDGP-LVRKSVEVYDPT--TNAWRQVADMNMCR--RNA 245 (302)
T ss_dssp EEEEETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEECCBSSS-SBCCCEEEEETT--TTEEEEECCCSSCC--BSC
T ss_pred EEEEeCCCCcEEECCCCc-ccc---ccccEEEECCEEEEECCCCCC-cccceEEEEeCC--CCCEeeCCCCCCcc--ccC
Confidence 99999999999998 666 544 456778889999999876542 122357777652 46799988777654 222
Q ss_pred EEEeeCCcEEEEEEeeCCc----eEEEEEeCCCCeEEEEE
Q 016751 318 LGFTERGKIFIRGECRHGG----YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 318 ~~~~~~g~i~~~~~~~~~~----~~~~~yd~~t~~~~~v~ 353 (383)
..+..++.||+. .+.+. ..+.+||+++++|+.+.
T Consensus 246 ~~~~~~~~i~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 246 GVCAVNGLLYVV--GGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EEEEETTEEEEE--CCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred eEEEECCEEEEE--CCcCCCcccccEEEEcCCCCeEEECC
Confidence 233346788888 42111 15999999999999884
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-13 Score=124.51 Aligned_cols=235 Identities=12% Similarity=0.148 Sum_probs=156.8
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCC---CCceEEEEccCccc---eeecCCCCCCCCceeEEE
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS---DRSLIYLWNPLIKK---YMTLPRPSLNPRYLGFGV 162 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~---~~~~~~v~NP~t~~---~~~LP~~~~~~~~~~~g~ 162 (383)
..|++....|..+.....+ ......+..+|.|++..+.. ....++++||.+++ |..+++++..+...+...
T Consensus 34 ~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 34 EKYDPKTQEWSFLPSITRK---RRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp EEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred EEEcCCCCeEEeCCCCChh---hccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 4677777778776532211 12223344567666554321 23579999999999 999999887764433322
Q ss_pred eccCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCC
Q 016751 163 NSVSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCP 236 (383)
Q Consensus 163 d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~ 236 (383)
. .+ +++.+.. ...+++|+..+++|+.++ .+|.++..+. ++.++|.+|.+++.. +....
T Consensus 111 ~-----~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~---~~~~~ 174 (301)
T 2vpj_A 111 L-----GD--MIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-DMQTAREGAG-----LVVASGVIYCLGGYD---GLNIL 174 (301)
T ss_dssp E-----TT--EEEEECCBCSSCBCCEEEEEETTTTEEEEEE-ECSSCCBSCE-----EEEETTEEEEECCBC---SSCBC
T ss_pred E-----CC--EEEEEcccCCCcccceEEEEcCCCCeEEECC-CCCCCcccce-----EEEECCEEEEECCCC---CCccc
Confidence 1 11 2333332 458999999999999998 7776654433 678899999998754 12234
Q ss_pred cEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCcee
Q 016751 237 WLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIW 315 (383)
Q Consensus 237 ~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 315 (383)
..+..||+.+++|+.+ ++| ..+ ....++..+|+|+++++.... ...-++|.++-. +++|.++..++... .
T Consensus 175 ~~~~~~d~~~~~W~~~~~~p-~~r---~~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~--~~~W~~~~~~p~~r--~ 245 (301)
T 2vpj_A 175 NSVEKYDPHTGHWTNVTPMA-TKR---SGAGVALLNDHIYVVGGFDGT-AHLSSVEAYNIR--TDSWTTVTSMTTPR--C 245 (301)
T ss_dssp CCEEEEETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEECCBCSS-SBCCCEEEEETT--TTEEEEECCCSSCC--B
T ss_pred ceEEEEeCCCCcEEeCCCCC-ccc---ccceEEEECCEEEEEeCCCCC-cccceEEEEeCC--CCcEEECCCCCCcc--c
Confidence 6799999999999998 566 544 456778889999999886542 113456666642 46799987776654 2
Q ss_pred EEEEEeeCCcEEEEEEeeCCc----eEEEEEeCCCCeEEEEE
Q 016751 316 WPLGFTERGKIFIRGECRHGG----YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 316 ~~~~~~~~g~i~~~~~~~~~~----~~~~~yd~~t~~~~~v~ 353 (383)
...++..++.||+. .+.+. ..+..||+++++|+.+.
T Consensus 246 ~~~~~~~~~~i~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 246 YVGATVLRGRLYAI--AGYDGNSLLSSIECYDPIIDSWEVVT 285 (301)
T ss_dssp SCEEEEETTEEEEE--CCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred ceeEEEECCEEEEE--cCcCCCcccccEEEEcCCCCeEEEcC
Confidence 22233346788888 42111 26999999999999883
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=126.83 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=156.9
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecC-------CCCceEEEEccCccceeecCCCCCCCCceeEE
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNG-------SDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFG 161 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~-------~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g 161 (383)
..|++....|..+.....+ ......+..+|.|++..+. .....++++||.+++|..+|+++..+...+..
T Consensus 42 ~~~d~~~~~W~~~~~~p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 118 (308)
T 1zgk_A 42 EAYNPSNGTWLRLADLQVP---RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG 118 (308)
T ss_dssp EEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred EEEcCCCCeEeECCCCCcc---cccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE
Confidence 4677777788877432221 1122334457777665431 11347899999999999999988766443322
Q ss_pred EeccCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCC
Q 016751 162 VNSVSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSC 235 (383)
Q Consensus 162 ~d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~ 235 (383)
.- .+ +++.+.. ...+++|+..+++|+.++ .+|.++..+. ++.++|.+|.+++.. +...
T Consensus 119 ~~-----~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~---~~~~ 182 (308)
T 1zgk_A 119 VI-----DG--HIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTRRIGVG-----VAVLNRLLYAVGGFD---GTNR 182 (308)
T ss_dssp EE-----TT--EEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSCCBSCE-----EEEETTEEEEECCBC---SSCB
T ss_pred EE-----CC--EEEEEcCCCCCcccccEEEECCCCCeEeECC-CCCccccceE-----EEEECCEEEEEeCCC---CCCc
Confidence 21 11 2333321 468999999999999998 7777665443 678899999998764 1122
Q ss_pred CcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 016751 236 PWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI 314 (383)
Q Consensus 236 ~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 314 (383)
...+..||+.+++|+.+ .+| ..+ .....+..+|+|+++++.... ...-.+|+++-. .++|+++..++...
T Consensus 183 ~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~--~~~W~~~~~~p~~r-- 253 (308)
T 1zgk_A 183 LNSAECYYPERNEWRMITAMN-TIR---SGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVE--TETWTFVAPMKHRR-- 253 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCS-SCC---BSCEEEEETTEEEEECCBCSS-SBCCCEEEEETT--TTEEEECCCCSSCC--
T ss_pred CceEEEEeCCCCeEeeCCCCC-Ccc---ccceEEEECCEEEEEeCCCCC-CccceEEEEeCC--CCcEEECCCCCCCc--
Confidence 46799999999999988 666 544 455677889999999876541 123457777642 46799987776654
Q ss_pred eEEEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEE
Q 016751 315 WWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 315 ~~~~~~~~~g~i~~~~~~~~~----~~~~~~yd~~t~~~~~v~ 353 (383)
.....+..++.||+. .+.+ ...+.+||+++++|+.+.
T Consensus 254 ~~~~~~~~~~~i~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~ 294 (308)
T 1zgk_A 254 SALGITVHQGRIYVL--GGYDGHTFLDSVECYDPDTDTWSEVT 294 (308)
T ss_dssp BSCEEEEETTEEEEE--CCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred cceEEEEECCEEEEE--cCcCCCcccceEEEEcCCCCEEeecC
Confidence 222233346788888 4211 116999999999999984
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-13 Score=123.13 Aligned_cols=210 Identities=17% Similarity=0.143 Sum_probs=142.5
Q ss_pred ceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-----cCeEEEEEcCCCceee
Q 016751 121 GVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-----NADAEVYSLRSNSWKN 195 (383)
Q Consensus 121 Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-----~~~~~vyss~t~~W~~ 195 (383)
+.|++..+......++++||.+++|..+++++..+...+.... .+ +++.+.. ...+++|+..+++|+.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-----~~--~lyv~GG~~~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-----DN--VVYILGGSQLFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-----TT--EEEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-----CC--EEEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence 4444444322356799999999999999998876644332221 11 2333321 4689999999999999
Q ss_pred eccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeE
Q 016751 196 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYL 274 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L 274 (383)
++ .+|.++..+. ++.++|.+|.+++.. .+......+..||+.+++|+.+ ++| ..+ .....+..+|+|
T Consensus 85 ~~-~~p~~r~~~~-----~~~~~~~iyv~GG~~--~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r---~~~~~~~~~~~i 152 (306)
T 3ii7_A 85 KL-GPPTPRDSLA-----ACAAEGKIYTSGGSE--VGNSALYLFECYDTRTESWHTKPSML-TQR---CSHGMVEANGLI 152 (306)
T ss_dssp EE-CCSSCCBSCE-----EEEETTEEEEECCBB--TTBSCCCCEEEEETTTTEEEEECCCS-SCC---BSCEEEEETTEE
T ss_pred CC-CCCcccccee-----EEEECCEEEEECCCC--CCCcEeeeEEEEeCCCCceEeCCCCc-CCc---ceeEEEEECCEE
Confidence 98 7887665443 678899999998764 2233456899999999999998 666 554 456677889999
Q ss_pred EEEEecCCCCcc---EEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc--eEEEEEeCCCCeE
Q 016751 275 CVFATIPNNTFR---SYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG--YGLLVYNPHSDTF 349 (383)
Q Consensus 275 ~~v~~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~~~~yd~~t~~~ 349 (383)
+++++....... .-.+|.++-. .+.|+++..++... ....++..++.||+.|-..... ..+..||+++++|
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r--~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPA--TETWTELCPMIEAR--KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW 228 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETT--TTEEEEECCCSSCC--BSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred EEECCCCCCCCcccccceEEEeCCC--CCeEEECCCccchh--hcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence 999876542111 3456777642 46799987776554 2223333467888882110111 1599999999999
Q ss_pred EEEE
Q 016751 350 KCIG 353 (383)
Q Consensus 350 ~~v~ 353 (383)
+.+.
T Consensus 229 ~~~~ 232 (306)
T 3ii7_A 229 KMVS 232 (306)
T ss_dssp EECC
T ss_pred EECC
Confidence 9883
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-12 Score=116.61 Aligned_cols=195 Identities=12% Similarity=0.133 Sum_probs=136.4
Q ss_pred CceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe------cCeEEEEEcCCCc---eeeeccCCCc
Q 016751 132 RSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV------NADAEVYSLRSNS---WKNIAYGFPR 202 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~---W~~~~~~~p~ 202 (383)
...++++||.+++|..+|+++..+...+.... .+ +++.+.. ...+++|+..+++ |+.++ .+|.
T Consensus 30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-----~~--~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-~~p~ 101 (301)
T 2vpj_A 30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-----HD--RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-PMNV 101 (301)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-----TT--EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-CCSS
T ss_pred eeEEEEEcCCCCeEEeCCCCChhhccccEEEE-----CC--EEEEEcCCCCCccCceEEEEECCCCCCCeeEECC-CCCC
Confidence 45789999999999999988776543222221 11 2333321 4579999999999 99998 8887
Q ss_pred eeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecC
Q 016751 203 SIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIP 281 (383)
Q Consensus 203 ~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~ 281 (383)
++..+. ++.++|.+|.+++.. +......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++..
T Consensus 102 ~r~~~~-----~~~~~~~lyv~GG~~---~~~~~~~~~~~d~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~ 169 (301)
T 2vpj_A 102 RRGLAG-----ATTLGDMIYVSGGFD---GSRRHTSMERYDPNIDQWSMLGDMQ-TAR---EGAGLVVASGVIYCLGGYD 169 (301)
T ss_dssp CCBSCE-----EEEETTEEEEECCBC---SSCBCCEEEEEETTTTEEEEEEECS-SCC---BSCEEEEETTEEEEECCBC
T ss_pred Ccccee-----EEEECCEEEEEcccC---CCcccceEEEEcCCCCeEEECCCCC-CCc---ccceEEEECCEEEEECCCC
Confidence 665443 678899999998764 122246899999999999988 666 554 4566778899999998765
Q ss_pred CCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEE
Q 016751 282 NNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 282 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~~~~yd~~t~~~~~v~ 353 (383)
.. ...-.+|.++-. .+.|+++..++... ....++..++.||+. .+.+ ...+..||+++++|+.+.
T Consensus 170 ~~-~~~~~~~~~d~~--~~~W~~~~~~p~~r--~~~~~~~~~~~i~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 170 GL-NILNSVEKYDPH--TGHWTNVTPMATKR--SGAGVALLNDHIYVV--GGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp SS-CBCCCEEEEETT--TTEEEEECCCSSCC--BSCEEEEETTEEEEE--CCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CC-cccceEEEEeCC--CCcEEeCCCCCccc--ccceEEEECCEEEEE--eCCCCCcccceEEEEeCCCCcEEECC
Confidence 42 123456777642 46899987776554 222333346788888 4211 125999999999999984
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-12 Score=116.96 Aligned_cols=201 Identities=9% Similarity=0.048 Sum_probs=133.5
Q ss_pred ceEEEEccCccceeecCCCCC--CCCceeEEEeccCCCCCCeEEEEEEe----------cCeEEEEEcCCCceeeeccCC
Q 016751 133 SLIYLWNPLIKKYMTLPRPSL--NPRYLGFGVNSVSGHLDDFKVVTISV----------NADAEVYSLRSNSWKNIAYGF 200 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~--~~~~~~~g~d~~~~~~~~ykVv~~~~----------~~~~~vyss~t~~W~~~~~~~ 200 (383)
..++++||.+++|.. ++++. .+...+... . .+..-|+.... ...+++|+..+++|+.++ .+
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~--~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~ 85 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVT--K---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP-PL 85 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEEC--T---TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC-CB
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEE--E---CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC-CC
Confidence 579999999999986 43332 222222211 1 22222222210 234899999999999998 88
Q ss_pred CceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEe
Q 016751 201 PRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFAT 279 (383)
Q Consensus 201 p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~ 279 (383)
|.++..+. .+.++|.+|.+++.....+......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++
T Consensus 86 p~~r~~~~-----~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 86 PSPRCLFG-----LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP-YVV---YGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp SSCEESCE-----EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS-SCC---BSCEEEEETTEEEEECC
T ss_pred Ccchhcee-----EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC-Ccc---cceeEEEECCEEEEEeC
Confidence 87766543 688899999998854111133446899999999999998 677 555 45677889999999998
Q ss_pred cCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc--eEEEEEeCCCCeEEEEE
Q 016751 280 IPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG--YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 280 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~~~~yd~~t~~~~~v~ 353 (383)
........-.+|.++-. .++|+++..++... ....++..++.||+.|-..... ..+.+||+++++|+.+.
T Consensus 157 ~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 228 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPK--KFEWKELAPMQTAR--SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE 228 (315)
T ss_dssp BCTTSCBCCCEEEEETT--TTEEEECCCCSSCC--BSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred CCCCCcccceEEEEeCC--CCeEEECCCCCCch--hceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence 73322233467777653 46799987776654 2223334467888883220111 16999999999999984
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-12 Score=114.81 Aligned_cols=195 Identities=11% Similarity=0.132 Sum_probs=135.5
Q ss_pred ceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCCCceeee
Q 016751 133 SLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGFPRSIEI 206 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~p~~~~~ 206 (383)
..++++||.+++|..++++|..+...+.... .+ +++.+.. ...+++|+..+++|+.++ .+|.++..
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-----~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~ 101 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM-----AG--LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA-NMRDRRST 101 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-----TT--EEEEESCBCSSSBCCCEEEEETTTTEEEEEC-CCSSCCBS
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE-----CC--EEEEEeCcCCCccccceEEECCCCCceeeCC-CCCccccc
Confidence 4689999999999999988876543222211 11 2333321 457999999999999999 88876654
Q ss_pred ccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCC-
Q 016751 207 NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNT- 284 (383)
Q Consensus 207 ~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~- 284 (383)
+. ++.++|.+|.+++.. +......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++.....
T Consensus 102 ~~-----~~~~~~~iyv~GG~~---~~~~~~~~~~~d~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 102 LG-----AAVLNGLLYAVGGFD---GSTGLSSVEAYNIKSNEWFHVAPMN-TRR---SSVGVGVVGGLLYAVGGYDVASR 169 (302)
T ss_dssp CE-----EEEETTEEEEEEEEC---SSCEEEEEEEEETTTTEEEEECCCS-SCC---BSCEEEEETTEEEEECCEETTTT
T ss_pred eE-----EEEECCEEEEEcCCC---CCccCceEEEEeCCCCeEeecCCCC-Ccc---cCceEEEECCEEEEEeCCCCCCC
Confidence 43 678899999998864 112235799999999999998 666 544 4566778899999998765421
Q ss_pred ccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc----eEEEEEeCCCCeEEEEE
Q 016751 285 FRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG----YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 285 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~~yd~~t~~~~~v~ 353 (383)
...-.+|.++-. .+.|+++..++... ....++..++.||+. .+.+. ..+..||+++++|+.+.
T Consensus 170 ~~~~~~~~yd~~--~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~yd~~~~~W~~~~ 236 (302)
T 2xn4_A 170 QCLSTVECYNAT--TNEWTYIAEMSTRR--SGAGVGVLNNLLYAV--GGHDGPLVRKSVEVYDPTTNAWRQVA 236 (302)
T ss_dssp EECCCEEEEETT--TTEEEEECCCSSCC--BSCEEEEETTEEEEE--CCBSSSSBCCCEEEEETTTTEEEEEC
T ss_pred ccccEEEEEeCC--CCcEEECCCCcccc--ccccEEEECCEEEEE--CCCCCCcccceEEEEeCCCCCEeeCC
Confidence 012356777642 46799987777654 222333346788888 42111 15999999999999984
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-12 Score=117.24 Aligned_cols=197 Identities=11% Similarity=0.050 Sum_probs=135.1
Q ss_pred CceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEE----e----cCeEEEEEcCCCceeeeccCCCce
Q 016751 132 RSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTIS----V----NADAEVYSLRSNSWKNIAYGFPRS 203 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~----~----~~~~~vyss~t~~W~~~~~~~p~~ 203 (383)
...++++||.+++|..+++++..+...+.... .+...|+... . ...+++|+..+++|+.++ .+|.+
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~ 111 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-----GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-PMSVP 111 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-----TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-CCSSC
T ss_pred cceEEEEcCCCCeEeECCCCCcccccceEEEE-----CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC-CCCcC
Confidence 45789999999999999988876644222211 1111111111 0 457999999999999998 78776
Q ss_pred eeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCC
Q 016751 204 IEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPN 282 (383)
Q Consensus 204 ~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~ 282 (383)
+..+. ++.++|.+|.+++.. +......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++...
T Consensus 112 r~~~~-----~~~~~~~iyv~GG~~---~~~~~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~ 179 (308)
T 1zgk_A 112 RNRIG-----VGVIDGHIYAVGGSH---GCIHHNSVERYEPERDEWHLVAPML-TRR---IGVGVAVLNRLLYAVGGFDG 179 (308)
T ss_dssp CBTCE-----EEEETTEEEEECCEE---TTEECCCEEEEETTTTEEEECCCCS-SCC---BSCEEEEETTEEEEECCBCS
T ss_pred ccccE-----EEEECCEEEEEcCCC---CCcccccEEEECCCCCeEeECCCCC-ccc---cceEEEEECCEEEEEeCCCC
Confidence 65433 678899999998764 112235799999999999998 666 555 45567778999999988654
Q ss_pred CCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEE
Q 016751 283 NTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 283 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~~~~yd~~t~~~~~v~ 353 (383)
.. ..-.+|.++- ..+.|+++..++... ....++..++.||+. .+.. ...+..||+++++|+.+.
T Consensus 180 ~~-~~~~~~~yd~--~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 180 TN-RLNSAECYYP--ERNEWRMITAMNTIR--SGAGVCVLHNCIYAA--GGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp SC-BCCCEEEEET--TTTEEEECCCCSSCC--BSCEEEEETTEEEEE--CCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred CC-cCceEEEEeC--CCCeEeeCCCCCCcc--ccceEEEECCEEEEE--eCCCCCCccceEEEEeCCCCcEEECC
Confidence 21 1335666664 246899987776654 222233346788888 4211 125999999999999874
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-11 Score=114.78 Aligned_cols=222 Identities=14% Similarity=0.092 Sum_probs=136.2
Q ss_pred EEEccCceEEEeecCCCCceEEEEccC--ccceeecCCCC-CCCCceeEEEeccCCCCCCeEEEEEE-e--------cCe
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPL--IKKYMTLPRPS-LNPRYLGFGVNSVSGHLDDFKVVTIS-V--------NAD 182 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~--t~~~~~LP~~~-~~~~~~~~g~d~~~~~~~~ykVv~~~-~--------~~~ 182 (383)
..+..+|.|.+..+. ...+++++||. +++|..+|+++ ..+...+.... .+...|+... . ...
T Consensus 14 ~~~~~~~~iyv~GG~-~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~~ 87 (357)
T 2uvk_A 14 TGAIDNDTVYIGLGS-AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-----DGNLYVFGGIGKNSEGLTQVFND 87 (357)
T ss_dssp EEEEETTEEEEECGG-GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-----TTEEEEECCEEECTTSCEEECCC
T ss_pred EEEEECCEEEEEeCc-CCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-----CCEEEEEcCCCCCCCccceeecc
Confidence 334447877666542 34589999998 49999999988 55433222211 1111111111 0 457
Q ss_pred EEEEEcCCCceeeeccCCC-ceeeeccCcccceeEECceEEEEEeeccCC------------------------------
Q 016751 183 AEVYSLRSNSWKNIAYGFP-RSIEINRSHINSSVFLNGSVHWCARFSCYH------------------------------ 231 (383)
Q Consensus 183 ~~vyss~t~~W~~~~~~~p-~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~------------------------------ 231 (383)
+++|+..+++|+.+. .++ .++..+. ++..+|.+|.+++.....
T Consensus 88 v~~yd~~~~~W~~~~-~~~p~~r~~~~-----~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 88 VHKYNPKTNSWVKLM-SHAPMGMAGHV-----TFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp EEEEETTTTEEEECS-CCCSSCCSSEE-----EEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred EEEEeCCCCcEEECC-CCCCcccccce-----EEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 999999999999998 666 4443332 577999999998753000
Q ss_pred -CCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 016751 232 -DNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 309 (383)
Q Consensus 232 -~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 309 (383)
.......+.+||+.+++|+.+ ++| .... ....++..+|+|+++++....+....++|.++-+.....|+++..++
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~p-~~~~--~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~ 238 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGESP-WYGT--AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVS 238 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEECS-SCCC--BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSS
T ss_pred cccCCcccEEEEeCCCCcEEECCCCC-CCCc--ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCC
Confidence 000235899999999999998 666 4331 23677888999999987543222234577765322347899987775
Q ss_pred CCCceeEEEEEeeCCcEEEEEEeeC--Cc-------------------eEEEEEeCCCCeEEEEE
Q 016751 310 KPQRIWWPLGFTERGKIFIRGECRH--GG-------------------YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 310 ~~~~~~~~~~~~~~g~i~~~~~~~~--~~-------------------~~~~~yd~~t~~~~~v~ 353 (383)
.+.......++..++.||+. .+. .+ ..+.+||+++++|+.+.
T Consensus 239 ~~~~~~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~ 301 (357)
T 2uvk_A 239 SPDGVAGGFAGISNDSLIFA--GGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG 301 (357)
T ss_dssp TTTCCBSCEEEEETTEEEEE--CCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE
T ss_pred CCcccccceEEEECCEEEEE--cCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC
Confidence 44311222234456788888 311 00 14889999999999984
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-11 Score=111.16 Aligned_cols=201 Identities=10% Similarity=0.132 Sum_probs=129.4
Q ss_pred ceEEEEccCccceeecCCCC-CCCCceeEEEeccCCCCCCeEEEEEEe----------cCeEEEEEcCCCceeeeccCCC
Q 016751 133 SLIYLWNPLIKKYMTLPRPS-LNPRYLGFGVNSVSGHLDDFKVVTISV----------NADAEVYSLRSNSWKNIAYGFP 201 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~-~~~~~~~~g~d~~~~~~~~ykVv~~~~----------~~~~~vyss~t~~W~~~~~~~p 201 (383)
....++||.+++|...|.+. ..+...+.. .. .+..-|+.... ...+++|+..+++|+.++ .+|
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~--~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p 97 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIV--TQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP-PLP 97 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEE--CS---SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS-CBS
T ss_pred cceEEECCCCCceecccCCccCCccceEEE--EE---CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC-CCC
Confidence 34789999999999854332 222222221 11 12111221100 123899999999999998 888
Q ss_pred ceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEec
Q 016751 202 RSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATI 280 (383)
Q Consensus 202 ~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~ 280 (383)
.++..+. .+.++|.+|.+++... .+......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++.
T Consensus 98 ~~r~~~~-----~~~~~~~iyv~GG~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 98 SARCLFG-----LGEVDDKIYVVAGKDL-QTEASLDSVLCYDPVAAKWSEVKNLP-IKV---YGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp SCBCSCE-----EEEETTEEEEEEEEBT-TTCCEEEEEEEEETTTTEEEEECCCS-SCE---ESCEEEEETTEEEEECCE
T ss_pred ccccccc-----eEEECCEEEEEcCccC-CCCcccceEEEEeCCCCCEeECCCCC-Ccc---cccEEEEECCEEEEEcCC
Confidence 7765443 6788999999998640 0122235799999999999998 677 554 445677789999999876
Q ss_pred CCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc--eEEEEEeCCCCeEEEEE
Q 016751 281 PNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG--YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 281 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~~~~yd~~t~~~~~v~ 353 (383)
.......-.+|.++-. .++|+++..++... ....++..++.||+.|-..... ..+..||+++++|+.+.
T Consensus 168 ~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 238 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPK--KGDWKDLAPMKTPR--SMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT 238 (318)
T ss_dssp ESSSCBCCCEEEEETT--TTEEEEECCCSSCC--BSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC
T ss_pred CCCCCccceEEEEcCC--CCEEEECCCCCCCc--ccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECC
Confidence 4321123457777653 46799987776554 2222333467888883110111 25899999999999984
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-10 Score=105.01 Aligned_cols=242 Identities=12% Similarity=0.056 Sum_probs=145.2
Q ss_pred eecccC--CCcccccCC-CCCCCCCCCeeEEEccCceEEEeecC-C-------CCceEEEEccCccceeecCCCC-CCCC
Q 016751 89 GFYSTK--CKEFEDLCD-PPFRTQLADLDVVGSCNGVLCFCSNG-S-------DRSLIYLWNPLIKKYMTLPRPS-LNPR 156 (383)
Q Consensus 89 ~~~~~~--~~~~~~l~~-p~~~~~~~~~~~~~s~~Gll~~~~~~-~-------~~~~~~v~NP~t~~~~~LP~~~-~~~~ 156 (383)
..|+.. ...|..+.. |..+ ......+..+|.|.+..+. . ....++++||.+++|..+++++ ..+.
T Consensus 34 ~~~d~~~~~~~W~~~~~~p~~~---R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~ 110 (357)
T 2uvk_A 34 YKLDTQAKDKKWTALAAFPGGP---RDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMA 110 (357)
T ss_dssp EEEETTSSSCCEEECCCCTTCC---CBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCS
T ss_pred EEEccccCCCCeeECCCCCCCc---CccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccc
Confidence 356654 366776643 2111 1222344557777665432 0 1347999999999999999877 4433
Q ss_pred ceeEEEeccCCCCCCeEEEEEEe----------------------------------------cCeEEEEEcCCCceeee
Q 016751 157 YLGFGVNSVSGHLDDFKVVTISV----------------------------------------NADAEVYSLRSNSWKNI 196 (383)
Q Consensus 157 ~~~~g~d~~~~~~~~ykVv~~~~----------------------------------------~~~~~vyss~t~~W~~~ 196 (383)
..+... . .+ +++.+.. ...+++|+..+++|+.+
T Consensus 111 ~~~~~~--~---~~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 183 (357)
T 2uvk_A 111 GHVTFV--H---NG--KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA 183 (357)
T ss_dssp SEEEEE--E---TT--EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEE
T ss_pred cceEEE--E---CC--EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEEC
Confidence 322222 1 22 3333332 15899999999999999
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEEC--CCCeeeEe-CCCCCCCCCCCceEEEEeCCe
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDF--AKEIFQTV-MMPYDLSTDDADKYLNVFDGY 273 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~--~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~ 273 (383)
. .+|.+...... .+.++|.+|.+++.. ........+..||+ .+++|+.+ .+| .... .....++..+|+
T Consensus 184 ~-~~p~~~~~~~~----~~~~~~~iyv~GG~~--~~~~~~~~v~~~d~d~~~~~W~~~~~~~-~~~~-~~~~~~~~~~~~ 254 (357)
T 2uvk_A 184 G-ESPWYGTAGAA----VVNKGDKTWLINGEA--KPGLRTDAVFELDFTGNNLKWNKLAPVS-SPDG-VAGGFAGISNDS 254 (357)
T ss_dssp E-ECSSCCCBSCE----EEEETTEEEEECCEE--ETTEECCCEEEEECC---CEEEECCCSS-TTTC-CBSCEEEEETTE
T ss_pred C-CCCCCCccccc----EEEECCEEEEEeeec--CCCcccCceEEEEecCCCCcEEecCCCC-CCcc-cccceEEEECCE
Confidence 8 77765443222 788999999998754 11112356788876 89999987 454 3321 134557889999
Q ss_pred EEEEEecCCC----------------CccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc-
Q 016751 274 LCVFATIPNN----------------TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG- 336 (383)
Q Consensus 274 L~~v~~~~~~----------------~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~- 336 (383)
|+++++.... ......+|+++-. ..+|+++..++.... ...++..+++||+.|=....+
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGELSQGRA--YGVSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCB--SSEEEEETTEEEEEEEECGGGC
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCCCCCcc--cceeEEeCCEEEEEeeeCCCCC
Confidence 9999875321 0112456666542 468999988887652 223344567888883110111
Q ss_pred --eEEEEEeCCCCeEEEEE
Q 016751 337 --YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 337 --~~~~~yd~~t~~~~~v~ 353 (383)
..++.+++++++|.+..
T Consensus 331 ~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEEEC-CCSCEEEC
T ss_pred EeeeEEEEEEcCcEeEeee
Confidence 26889999999998763
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-10 Score=112.88 Aligned_cols=211 Identities=14% Similarity=0.118 Sum_probs=134.4
Q ss_pred cCceEEEeecC--CCCceEEEEccCccceeecC-C-----CCCCCCceeEEEeccCCCCCCeEEEEEEe-------cCeE
Q 016751 119 CNGVLCFCSNG--SDRSLIYLWNPLIKKYMTLP-R-----PSLNPRYLGFGVNSVSGHLDDFKVVTISV-------NADA 183 (383)
Q Consensus 119 ~~Gll~~~~~~--~~~~~~~v~NP~t~~~~~LP-~-----~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-------~~~~ 183 (383)
.+|.|++..+. .....++++||.+++|..++ + ++..+...+...-.. ++ +++.+.. ...+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~----~~-~lyv~GG~~~~~~~~~dv 470 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR----NN-QLLLIGGRKAPHQGLSDN 470 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT----TT-EEEEECCBSSTTCBCCCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc----CC-EEEEEcCCCCCCCccccE
Confidence 56666665532 12457999999999999998 5 344333333332210 12 2333332 3579
Q ss_pred EEEEcCCCceeeeccCCCceeeeccCcccceeEE-CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeC----CCCCC
Q 016751 184 EVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFL-NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM----MPYDL 258 (383)
Q Consensus 184 ~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~-~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~----lP~~~ 258 (383)
++|+..+++|+.++ .+|.++..+. ++.+ +|.+|.+++.. ... .+..||+.+++|+.+. +| ..
T Consensus 471 ~~yd~~t~~W~~~~-~~p~~R~~h~-----~~~~~~~~iyv~GG~~----~~~--~v~~yd~~t~~W~~~~~~g~~p-~~ 537 (695)
T 2zwa_A 471 WIFDMKTREWSMIK-SLSHTRFRHS-----ACSLPDGNVLILGGVT----EGP--AMLLYNVTEEIFKDVTPKDEFF-QN 537 (695)
T ss_dssp EEEETTTTEEEECC-CCSBCCBSCE-----EEECTTSCEEEECCBC----SSC--SEEEEETTTTEEEECCCSSGGG-GS
T ss_pred EEEeCCCCcEEECC-CCCCCcccce-----EEEEcCCEEEEECCCC----CCC--CEEEEECCCCceEEccCCCCCC-Cc
Confidence 99999999999998 8887765544 5554 99999998865 112 7999999999999985 56 44
Q ss_pred CCCCCceEEEEeC---CeEEEEEecCCCC-ccEEEEEEeccCCCCCC------eEEEEEecCCCceeEEEEEeeCCcEEE
Q 016751 259 STDDADKYLNVFD---GYLCVFATIPNNT-FRSYELWVMKEYGLTES------WTKLYTIEKPQRIWWPLGFTERGKIFI 328 (383)
Q Consensus 259 ~~~~~~~~l~~~~---g~L~~v~~~~~~~-~~~l~iW~l~~~~~~~~------W~~~~~i~~~~~~~~~~~~~~~g~i~~ 328 (383)
+ .....++++ |+|+++++...++ ...-.+|.++-. .+. |+++..++..........+.+++.||+
T Consensus 538 r---~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~--~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv 612 (695)
T 2zwa_A 538 S---LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD--AENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLI 612 (695)
T ss_dssp C---CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEEC--TTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEE
T ss_pred c---cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEcc--CCccccceEEEEcCCCCCCCcccceEEEeCCCEEEE
Confidence 4 233334444 8999999874321 123456666542 234 888877642221222233334478988
Q ss_pred EEEeeCC-------ceEEEEEeCCCCeEEEEEE
Q 016751 329 RGECRHG-------GYGLLVYNPHSDTFKCIGV 354 (383)
Q Consensus 329 ~~~~~~~-------~~~~~~yd~~t~~~~~v~~ 354 (383)
. ++.. ...+.+||+++++|+.+.+
T Consensus 613 ~--GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 643 (695)
T 2zwa_A 613 V--GGTSPSGLFDRTNSIISLDPLSETLTSIPI 643 (695)
T ss_dssp E--CCBCSSCCCCTTTSEEEEETTTTEEEECCC
T ss_pred E--CCccCCCCCCCCCeEEEEECCCCeEEEeec
Confidence 8 4211 1159999999999996644
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=99.10 E-value=6.9e-11 Score=77.75 Aligned_cols=42 Identities=29% Similarity=0.585 Sum_probs=38.4
Q ss_pred cCCCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHH
Q 016751 21 CSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 62 (383)
Q Consensus 21 ~~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F 62 (383)
..+..||+|++.+||++||++++.++++|||+|+.++.++.|
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l 48 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence 467899999999999999999999999999999999998876
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-10 Score=103.93 Aligned_cols=50 Identities=22% Similarity=0.416 Sum_probs=46.7
Q ss_pred cCCCCCCHHHHHHHHhcCChhhhH-HhhccchhhHhhcCChHHHHHHHhcC
Q 016751 21 CSSFRLPEDVMIDIFLRLEVKNLA-RLRCVCKSWNTLLTSKTFVEIHLNQS 70 (383)
Q Consensus 21 ~~~~~Lp~Dll~eIL~rLP~~~l~-r~r~VcK~W~~li~s~~F~~~~~~~~ 70 (383)
..+..||+|+|.+||+|||+++|+ ||++|||+|+.+++++.|-+.+..+.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 367899999999999999999999 99999999999999999999988766
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-06 Score=81.76 Aligned_cols=282 Identities=13% Similarity=0.154 Sum_probs=142.5
Q ss_pred ccCCCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHHHHHHHhcCCC-CCCcEEEeec-C---CCC-ceeeccc
Q 016751 20 KCSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMR-NPRPLLFRHG-I---SPS-YLGFYST 93 (383)
Q Consensus 20 ~~~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~~~-~~~~~~~~~~-~---~~~-~~~~~~~ 93 (383)
...+..||+|++..||+.|++++|.++.+|||+|+.++.++.+-+........ .+...-.... . ... ....|..
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~ 95 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIR 95 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhh
Confidence 34678999999999999999999999999999999999988766655432211 1110000000 0 000 0001110
Q ss_pred ---CCCcccccCC--CC-CCCCCC-CeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccC
Q 016751 94 ---KCKEFEDLCD--PP-FRTQLA-DLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVS 166 (383)
Q Consensus 94 ---~~~~~~~l~~--p~-~~~~~~-~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~ 166 (383)
....|..-.. .. ...... -...+...+.+|+... .++.+.+||..+++...--.... .....+.+++
T Consensus 96 ~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~-- 169 (445)
T 2ovr_B 96 QHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGS---DDNTLKVWSAVTGKCLRTLVGHT-GGVWSSQMRD-- 169 (445)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEE---TTSCEEEEETTTCCEEEECCCCS-SCEEEEEEET--
T ss_pred hhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEE---CCCcEEEEECCCCcEEEEEcCCC-CCEEEEEecC--
Confidence 0011111111 00 000111 1233444455555544 68899999998877554222111 1113344432
Q ss_pred CCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCC
Q 016751 167 GHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK 246 (383)
Q Consensus 167 ~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~ 246 (383)
+ .++.......+.+|+..++.-...-....... . ++..+|.....+..+ ..|..+|+.+
T Consensus 170 ----~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v-----~---~~~~~~~~l~s~s~d--------g~i~~wd~~~ 228 (445)
T 2ovr_B 170 ----N-IIISGSTDRTLKVWNAETGECIHTLYGHTSTV-----R---CMHLHEKRVVSGSRD--------ATLRVWDIET 228 (445)
T ss_dssp ----T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCE-----E---EEEEETTEEEEEETT--------SEEEEEESSS
T ss_pred ----C-EEEEEeCCCeEEEEECCcCcEEEEECCCCCcE-----E---EEEecCCEEEEEeCC--------CEEEEEECCC
Confidence 1 23333336688999998874322110111111 1 444455554444433 5899999987
Q ss_pred CeeeE-eCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc
Q 016751 247 EIFQT-VMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK 325 (383)
Q Consensus 247 ~~~~~-i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~ 325 (383)
.+-.. +... . ........+|...+++..+ ..+.+|.++.. ..+..+.........+.+ ++.
T Consensus 229 ~~~~~~~~~~-~-----~~v~~~~~~~~~l~~~~~d----g~i~iwd~~~~------~~~~~~~~~~~~v~~~~~--~~~ 290 (445)
T 2ovr_B 229 GQCLHVLMGH-V-----AAVRCVQYDGRRVVSGAYD----FMVKVWDPETE------TCLHTLQGHTNRVYSLQF--DGI 290 (445)
T ss_dssp CCEEEEEECC-S-----SCEEEEEECSSCEEEEETT----SCEEEEEGGGT------EEEEEECCCSSCEEEEEE--CSS
T ss_pred CcEEEEEcCC-c-----ccEEEEEECCCEEEEEcCC----CEEEEEECCCC------cEeEEecCCCCceEEEEE--CCC
Confidence 65432 2221 1 1122233367666666555 48899987651 233344322111222222 454
Q ss_pred EEEEEEeeCCceEEEEEeCCCCeE
Q 016751 326 IFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 326 i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
.++. ...++ .+..||+++++.
T Consensus 291 ~l~~--~~~d~-~i~i~d~~~~~~ 311 (445)
T 2ovr_B 291 HVVS--GSLDT-SIRVWDVETGNC 311 (445)
T ss_dssp EEEE--EETTS-CEEEEETTTCCE
T ss_pred EEEE--EeCCC-eEEEEECCCCCE
Confidence 4444 32444 378888877654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-08 Score=100.25 Aligned_cols=214 Identities=14% Similarity=0.121 Sum_probs=131.1
Q ss_pred CceEEEeecCCC---------CceEEEEccCccceeecCCCCCCCCc--eeEEEeccCCCCCCeEEEEEEe--cCeEEEE
Q 016751 120 NGVLCFCSNGSD---------RSLIYLWNPLIKKYMTLPRPSLNPRY--LGFGVNSVSGHLDDFKVVTISV--NADAEVY 186 (383)
Q Consensus 120 ~Gll~~~~~~~~---------~~~~~v~NP~t~~~~~LP~~~~~~~~--~~~g~d~~~~~~~~ykVv~~~~--~~~~~vy 186 (383)
+|.|++..+... ...+.++||.|++|..+++++..+.. .+..+.. .+ +++.+.. ...+++|
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~----~g--~lyv~GG~~~~~v~~y 270 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG----NG--QIVVTGGNDAKKTSLY 270 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT----TS--CEEEECSSSTTCEEEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC----CC--CEEEeCCCCCCceEEe
Confidence 787766643211 12688999999999999877654432 2222221 11 2333332 4589999
Q ss_pred EcCCCceeeeccCCCceeeeccCcccceeEE-CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe------CCCCCCC
Q 016751 187 SLRSNSWKNIAYGFPRSIEINRSHINSSVFL-NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV------MMPYDLS 259 (383)
Q Consensus 187 ss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~-~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i------~lP~~~~ 259 (383)
+..+++|+.++ .++.++..+. ++.+ +|++|.+++.. .+......+..||+.+++|+.+ ++| ...
T Consensus 271 d~~t~~W~~~~-~~~~~R~~~s-----~~~~~dg~iyv~GG~~--~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~-~~~ 341 (656)
T 1k3i_A 271 DSSSDSWIPGP-DMQVARGYQS-----SATMSDGRVFTIGGSW--SGGVFEKNGEVYSPSSKTWTSLPNAKVNPML-TAD 341 (656)
T ss_dssp EGGGTEEEECC-CCSSCCSSCE-----EEECTTSCEEEECCCC--CSSSCCCCEEEEETTTTEEEEETTSCSGGGC-CCC
T ss_pred cCcCCceeECC-CCCccccccc-----eEEecCCeEEEEeCcc--cCCcccccceEeCCCCCcceeCCCccccccc-ccc
Confidence 99999999998 8887765443 5677 99999998842 1122346799999999999986 233 221
Q ss_pred C------CCC-----------------------------------------------ceEEEE----eCCeEEEEEecCC
Q 016751 260 T------DDA-----------------------------------------------DKYLNV----FDGYLCVFATIPN 282 (383)
Q Consensus 260 ~------~~~-----------------------------------------------~~~l~~----~~g~L~~v~~~~~ 282 (383)
. ++. ....++ .+|+|+++++...
T Consensus 342 ~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 342 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421 (656)
T ss_dssp TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence 0 000 001222 3789999887532
Q ss_pred C-----CccEEEEEEeccCCCCCCeEEEE--EecCCCceeEEEEEeeCCcEEEEEEeeCC----------ceEEEEEeCC
Q 016751 283 N-----TFRSYELWVMKEYGLTESWTKLY--TIEKPQRIWWPLGFTERGKIFIRGECRHG----------GYGLLVYNPH 345 (383)
Q Consensus 283 ~-----~~~~l~iW~l~~~~~~~~W~~~~--~i~~~~~~~~~~~~~~~g~i~~~~~~~~~----------~~~~~~yd~~ 345 (383)
. ......++..+- ....|.++. .++.... .....+..+|+||+. .+.+ ...+.+||++
T Consensus 422 ~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~mp~~R~-~~~~~~l~~g~i~v~--GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEP--GTSPNTVFASNGLYFART-FHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp SSSSBCCCCEEEEECCST--TSCCEEEECTTCCSSCCB-SCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred CCCCCcCCcceEEEcCCC--CCCCeeEEccCCCCCCcc-cCCeEECCCCCEEEE--CCcccCcCcCCCCcccceEEEcCC
Confidence 1 011224554443 346799876 6665541 222233447889988 4211 0158999999
Q ss_pred CCeEEEEE
Q 016751 346 SDTFKCIG 353 (383)
Q Consensus 346 t~~~~~v~ 353 (383)
+++|+.+.
T Consensus 497 t~~W~~~~ 504 (656)
T 1k3i_A 497 QDTFYKQN 504 (656)
T ss_dssp GTEEEECC
T ss_pred CCceeecC
Confidence 99999874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-06 Score=81.72 Aligned_cols=291 Identities=12% Similarity=0.156 Sum_probs=142.1
Q ss_pred CCCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCC-hHHHHHHH-hcCCCCCCcE------EEeecCCCCce----e
Q 016751 22 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTS-KTFVEIHL-NQSMRNPRPL------LFRHGISPSYL----G 89 (383)
Q Consensus 22 ~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s-~~F~~~~~-~~~~~~~~~~------~~~~~~~~~~~----~ 89 (383)
.+..||+|++.+||+.||+++|+++..|||+|+.++.+ +..-+... +.....+... +...++..... .
T Consensus 14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (464)
T 3v7d_B 14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRL 93 (464)
T ss_dssp HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchhhHH
Confidence 35679999999999999999999999999999999998 65444433 2211111000 00000000000 0
Q ss_pred ecccC---CCcccccCCCC----CCCCCCC-eeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEE
Q 016751 90 FYSTK---CKEFEDLCDPP----FRTQLAD-LDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFG 161 (383)
Q Consensus 90 ~~~~~---~~~~~~l~~p~----~~~~~~~-~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g 161 (383)
.|... ...|....... ....... ...+...+++++... .++.+.+||..+++...--... ......+.
T Consensus 94 ~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs---~dg~i~vwd~~~~~~~~~~~~h-~~~V~~l~ 169 (464)
T 3v7d_B 94 SFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGA---DDKMIRVYDSINKKFLLQLSGH-DGGVWALK 169 (464)
T ss_dssp HHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEE---TTSCEEEEETTTTEEEEEECCC-SSCEEEEE
T ss_pred HHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEc---CCCcEEEEECCCCcEEEEEeCC-CcCEEEEE
Confidence 01000 01111111100 0001112 233444555555554 6889999998887654421111 11124555
Q ss_pred EeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCcccceeE--ECceEEEEEeeccCCCCCCCcEE
Q 016751 162 VNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLI 239 (383)
Q Consensus 162 ~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~~~i 239 (383)
+.+. + .++.......+.+++.+++.-...-.......... .+. -+|.....+..+ ..|
T Consensus 170 ~~~~-----~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l------~~~~~~~~~~l~s~s~d--------~~i 229 (464)
T 3v7d_B 170 YAHG-----G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL------DIVEYKNIKYIVTGSRD--------NTL 229 (464)
T ss_dssp ECST-----T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE------EEEESSSCEEEEEEETT--------SCE
T ss_pred EcCC-----C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE------EEecCCCCCEEEEEcCC--------CcE
Confidence 5443 2 44444447789999998875322210111111100 111 133433333332 478
Q ss_pred EEEECCCCeeeEe-C----------CCCCC-------CCCC-CceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCC
Q 016751 240 VSFDFAKEIFQTV-M----------MPYDL-------STDD-ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTE 300 (383)
Q Consensus 240 l~fD~~~~~~~~i-~----------lP~~~-------~~~~-~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~ 300 (383)
..+|+.+..-... . .| .. .... ....-...+|.+.+++..+ ..+.+|.+..
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d----~~i~vwd~~~----- 299 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTP-EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD----NTLIVWDVAQ----- 299 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCG-GGCTTEEEEECCCSSCEEEEEEETTEEEEEETT----SCEEEEETTT-----
T ss_pred EEeeCCCCcccccccccCCcceEeecc-CCCeEEEEEccCccceEEEEcCCCCEEEEEeCC----CeEEEEECCC-----
Confidence 8888876543211 0 00 00 0000 1111223345555555544 4899998764
Q ss_pred CeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 301 SWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 301 ~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
...+..+.........+.+..++..++. ...++ .+..||+++++..
T Consensus 300 -~~~~~~~~~~~~~v~~~~~~~~~~~l~s--g~~dg-~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 300 -MKCLYILSGHTDRIYSTIYDHERKRCIS--ASMDT-TIRIWDLENGELM 345 (464)
T ss_dssp -TEEEEEECCCSSCEEEEEEETTTTEEEE--EETTS-CEEEEETTTTEEE
T ss_pred -CcEEEEecCCCCCEEEEEEcCCCCEEEE--EeCCC-cEEEEECCCCcEE
Confidence 1233344322213455666667766666 42455 3899999887643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-06 Score=80.39 Aligned_cols=283 Identities=14% Similarity=0.157 Sum_probs=139.4
Q ss_pred CCCCCCHH----HHHHHHhcCChhhhHHhhccchhhHhhcCChHHHHHHHhcC-C----------CCCC-cEEEee-c--
Q 016751 22 SSFRLPED----VMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQS-M----------RNPR-PLLFRH-G-- 82 (383)
Q Consensus 22 ~~~~Lp~D----ll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~-~----------~~~~-~~~~~~-~-- 82 (383)
.+..||+| ++..||+.|++++|.++.+|||+|+.++.++.+=+...... . ...+ ..++.. .
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 89 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPD 89 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC------
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCC
Confidence 34679999 99999999999999999999999999998754433222211 0 0000 000110 0
Q ss_pred ---CCCC-ceeeccc-------CCCcccccCCCC-----CCCCCCCeeEEEccCceEEEeecCCCCceEEEEccCcccee
Q 016751 83 ---ISPS-YLGFYST-------KCKEFEDLCDPP-----FRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYM 146 (383)
Q Consensus 83 ---~~~~-~~~~~~~-------~~~~~~~l~~p~-----~~~~~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~ 146 (383)
+... ...+|.. ....|..-.... .......+..+...+..++... .++.+.++|..+++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~---~dg~i~iwd~~~~~~~ 166 (435)
T 1p22_A 90 GNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGL---RDNTIKIWDKNTLECK 166 (435)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEE---SSSCEEEEESSSCCEE
T ss_pred CCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEe---CCCeEEEEeCCCCeEE
Confidence 0000 0001110 001111111000 0001123334444444444444 6788999999887755
Q ss_pred ecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEe
Q 016751 147 TLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCAR 226 (383)
Q Consensus 147 ~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~ 226 (383)
..-..... ....+.++. + .++.......+.+|+..++.-...-....... . ++..++.....+.
T Consensus 167 ~~~~~h~~-~v~~l~~~~------~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v-----~---~l~~~~~~l~s~s 230 (435)
T 1p22_A 167 RILTGHTG-SVLCLQYDE------R-VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV-----L---HLRFNNGMMVTCS 230 (435)
T ss_dssp EEECCCSS-CEEEEECCS------S-EEEEEETTSCEEEEESSSCCEEEEECCCCSCE-----E---EEECCTTEEEEEE
T ss_pred EEEcCCCC-cEEEEEECC------C-EEEEEcCCCeEEEEECCCCcEEEEEcCCCCcE-----E---EEEEcCCEEEEee
Confidence 43221111 113333321 1 23333336689999998875422210111111 1 4444555444444
Q ss_pred eccCCCCCCCcEEEEEECCCCeeeEe--CCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEE
Q 016751 227 FSCYHDNSCPWLIVSFDFAKEIFQTV--MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTK 304 (383)
Q Consensus 227 ~~~~~~~~~~~~il~fD~~~~~~~~i--~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~ 304 (383)
.+ ..|..+|+.+..-... .+. ... ........+|...+++..+ ..+.+|.++.. ..
T Consensus 231 ~d--------g~i~vwd~~~~~~~~~~~~~~-~~~---~~v~~~~~~~~~l~s~~~d----g~i~vwd~~~~------~~ 288 (435)
T 1p22_A 231 KD--------RSIAVWDMASPTDITLRRVLV-GHR---AAVNVVDFDDKYIVSASGD----RTIKVWNTSTC------EF 288 (435)
T ss_dssp TT--------SCEEEEECSSSSCCEEEEEEC-CCS---SCEEEEEEETTEEEEEETT----SEEEEEETTTC------CE
T ss_pred CC--------CcEEEEeCCCCCCceeeeEec-CCC---CcEEEEEeCCCEEEEEeCC----CeEEEEECCcC------cE
Confidence 33 5789999876543211 111 111 1222233366666666555 48999988752 23
Q ss_pred EEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 305 LYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
+..+.........+.+ ++..++. ...++ .+..||+++++..
T Consensus 289 ~~~~~~~~~~v~~~~~--~~~~l~~--g~~dg-~i~iwd~~~~~~~ 329 (435)
T 1p22_A 289 VRTLNGHKRGIACLQY--RDRLVVS--GSSDN-TIRLWDIECGACL 329 (435)
T ss_dssp EEEEECCSSCEEEEEE--ETTEEEE--EETTS-CEEEEETTTCCEE
T ss_pred EEEEcCCCCcEEEEEe--CCCEEEE--EeCCC-eEEEEECCCCCEE
Confidence 3344322211222333 3555555 32455 4999999987643
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.5e-07 Score=92.00 Aligned_cols=156 Identities=7% Similarity=-0.000 Sum_probs=107.0
Q ss_pred cCeEEEEEcCCCceeeeccC-----CCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe
Q 016751 180 NADAEVYSLRSNSWKNIAYG-----FPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV 252 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~-----~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i 252 (383)
...+++|+..+++|+.+..+ +|.++..+. ++.+ +|.+|.+++.. ........+..||+.+++|+.+
T Consensus 411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs-----~~~~~~~~~lyv~GG~~--~~~~~~~dv~~yd~~t~~W~~~ 483 (695)
T 2zwa_A 411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHT-----FTTISRNNQLLLIGGRK--APHQGLSDNWIFDMKTREWSMI 483 (695)
T ss_dssp CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCE-----EEEETTTTEEEEECCBS--STTCBCCCCEEEETTTTEEEEC
T ss_pred cCcEEEEECCCCeEEEeccCCCCCCCCccccceE-----EEEEccCCEEEEEcCCC--CCCCccccEEEEeCCCCcEEEC
Confidence 45799999999999988722 455554433 6788 99999998865 1111345799999999999998
Q ss_pred -CCCCCCCCCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEE---ecCCCceeEEEEEeeC-CcE
Q 016751 253 -MMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYT---IEKPQRIWWPLGFTER-GKI 326 (383)
Q Consensus 253 -~lP~~~~~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~---i~~~~~~~~~~~~~~~-g~i 326 (383)
++| ..+ .....+.. +|+|+++++.... . .+|.++-. .+.|+.+.. ++........+.+..+ +.|
T Consensus 484 ~~~p-~~R---~~h~~~~~~~~~iyv~GG~~~~---~-~v~~yd~~--t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 484 KSLS-HTR---FRHSACSLPDGNVLILGGVTEG---P-AMLLYNVT--EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp CCCS-BCC---BSCEEEECTTSCEEEECCBCSS---C-SEEEEETT--TTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCC-CCc---ccceEEEEcCCEEEEECCCCCC---C-CEEEEECC--CCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 677 555 45566665 9999999987763 2 77777653 467998765 4444311221222333 678
Q ss_pred EEEEEeeC--Cc----eEEEEEeCCCCe------EEEEEE
Q 016751 327 FIRGECRH--GG----YGLLVYNPHSDT------FKCIGV 354 (383)
Q Consensus 327 ~~~~~~~~--~~----~~~~~yd~~t~~------~~~v~~ 354 (383)
|+. ++. ++ ..+.+||+++++ |+.+.-
T Consensus 554 yv~--GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~ 591 (695)
T 2zwa_A 554 IIL--GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ 591 (695)
T ss_dssp EEE--CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE
T ss_pred EEE--CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC
Confidence 888 421 11 269999999999 887743
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-06 Score=87.33 Aligned_cols=228 Identities=12% Similarity=0.096 Sum_probs=130.0
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCC
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGH 168 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~ 168 (383)
..|++....|..+..................+|.|++..+. ....+.++||.|++|..+++++..+.+.+...-+.
T Consensus 222 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~-~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d--- 297 (656)
T 1k3i_A 222 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN-DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--- 297 (656)
T ss_dssp EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS-STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT---
T ss_pred EEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCC-CCCceEEecCcCCceeECCCCCccccccceEEecC---
Confidence 46777777776654221111111112344578888777642 23479999999999999999887765533332211
Q ss_pred CCCeEEEEEEe-------cCeEEEEEcCCCceeeecc----CCCceee------------ec------------------
Q 016751 169 LDDFKVVTISV-------NADAEVYSLRSNSWKNIAY----GFPRSIE------------IN------------------ 207 (383)
Q Consensus 169 ~~~ykVv~~~~-------~~~~~vyss~t~~W~~~~~----~~p~~~~------------~~------------------ 207 (383)
+ |++.+.. ...+|+|+..+++|+.++. .++.... +.
T Consensus 298 -g--~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~y 374 (656)
T 1k3i_A 298 -G--RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY 374 (656)
T ss_dssp -S--CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEE
T ss_pred -C--eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeee
Confidence 1 2333321 3579999999999998630 2221100 00
Q ss_pred --------------c-------Ccccc-eeE---ECceEEEEEeeccCCCCCCCc---EEEEEECCCCeeeEe---CCCC
Q 016751 208 --------------R-------SHINS-SVF---LNGSVHWCARFSCYHDNSCPW---LIVSFDFAKEIFQTV---MMPY 256 (383)
Q Consensus 208 --------------~-------~~~~~-~v~---~~G~lYw~~~~~~~~~~~~~~---~il~fD~~~~~~~~i---~lP~ 256 (383)
. ....+ ++. .+|.+|.+++.....+..... .+..||+.+++|..+ .+|
T Consensus 375 d~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp- 453 (656)
T 1k3i_A 375 YTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY- 453 (656)
T ss_dssp ECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS-
T ss_pred ecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC-
Confidence 0 00011 222 489999998753101111122 788999999999887 566
Q ss_pred CCCCCCCceEEEEe-CCeEEEEEecCCC-----CccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEE
Q 016751 257 DLSTDDADKYLNVF-DGYLCVFATIPNN-----TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIR 329 (383)
Q Consensus 257 ~~~~~~~~~~l~~~-~g~L~~v~~~~~~-----~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~ 329 (383)
..+ .....+.+ +|+|+++++.... ......++.++-. .++|+.+..++..........+..+|+||+.
T Consensus 454 ~~R---~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~--t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~ 527 (656)
T 1k3i_A 454 FAR---TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE--QDTFYKQNPNSIVRVYHSISLLLPDGRVFNG 527 (656)
T ss_dssp SCC---BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG--GTEEEECCCCSSCCCTTEEEEECTTSCEEEE
T ss_pred CCc---ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC--CCceeecCCCCCccccccHhhcCCCcEEEec
Confidence 444 33455666 8999999875421 0112334444321 3679987777665432333333457888888
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.1e-05 Score=69.48 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHHHHHHHhcC
Q 016751 22 SSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQS 70 (383)
Q Consensus 22 ~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~~~ 70 (383)
.++.||+|++..||+.|++++|+++.+|||+||.++.++..=+.+..+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 3568999999999999999999999999999999999998777666654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=97.59 E-value=3e-05 Score=71.05 Aligned_cols=42 Identities=29% Similarity=0.560 Sum_probs=37.8
Q ss_pred ccCCCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChH
Q 016751 20 KCSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKT 61 (383)
Q Consensus 20 ~~~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~ 61 (383)
...+..||+|++.+||.+|+.+++.+++.|||+|+.++.++.
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~ 47 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES 47 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence 346899999999999999999999999999999999987654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00032 Score=69.38 Aligned_cols=36 Identities=28% Similarity=0.590 Sum_probs=29.5
Q ss_pred cCCCCCCHHHHHHHHhcCC-hhhhHHhhccchhhHhh
Q 016751 21 CSSFRLPEDVMIDIFLRLE-VKNLARLRCVCKSWNTL 56 (383)
Q Consensus 21 ~~~~~Lp~Dll~eIL~rLP-~~~l~r~r~VcK~W~~l 56 (383)
..++.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4578999999999999999 99999999999999988
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.19 Score=45.37 Aligned_cols=189 Identities=7% Similarity=0.053 Sum_probs=98.7
Q ss_pred CCceEEEEccCccceeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccC
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRS 209 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~ 209 (383)
.++.+.|||........+....... ....+.+.+. .+.-.++.......+.+|+..++.|.... ..........
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~v~- 105 (379)
T 3jrp_A 31 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP---KFGTILASCSYDGKVLIWKEENGRWSQIA-VHAVHSASVN- 105 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG---GGCSEEEEEETTSCEEEEEEETTEEEEEE-EECCCSSCEE-
T ss_pred CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCC---CCCCEEEEeccCCEEEEEEcCCCceeEee-eecCCCcceE-
Confidence 4667788877633333222222221 1245555443 22334444443668999999999887655 2221110001
Q ss_pred cccceeEE--C--ceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCCCCceEEEEe--------------
Q 016751 210 HINSSVFL--N--GSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVF-------------- 270 (383)
Q Consensus 210 ~~~~~v~~--~--G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~-------------- 270 (383)
++.+ + |.+...+... ..|..||+.+..- ....+. .... ....+.-.
T Consensus 106 ----~~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~-~~~~--~v~~~~~~~~~~~~~~~~~~~~ 170 (379)
T 3jrp_A 106 ----SVQWAPHEYGPLLLVASSD--------GKVSVVEFKENGTTSPIIID-AHAI--GVNSASWAPATIEEDGEHNGTK 170 (379)
T ss_dssp ----EEEECCGGGCSEEEEEETT--------SEEEEEECCTTSCCCEEEEE-CCTT--CEEEEEECCCC----------C
T ss_pred ----EEEeCCCCCCCEEEEecCC--------CcEEEEecCCCCceeeEEec-CCCC--ceEEEEEcCccccccccccCCC
Confidence 2222 2 4444444433 5888999877622 222211 1110 11122222
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeC---CcEEEEEEeeCCceEEEEEeCCCC
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTER---GKIFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~---g~i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
++.+.++...+ ..+.+|.+... ...|.....+.........+.+..+ +.+++. ...++ .+.+||++++
T Consensus 171 ~~~~l~~~~~d----g~i~i~d~~~~--~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s--~~~dg-~i~iwd~~~~ 241 (379)
T 3jrp_A 171 ESRKFVTGGAD----NLVKIWKYNSD--AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDR-TCIIWTQDNE 241 (379)
T ss_dssp TTCEEEEEETT----SCEEEEEEETT--TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTS-CEEEEEESST
T ss_pred CCCEEEEEeCC----CeEEEEEecCC--CcceeeEEEEecccCcEeEEEECCCCCCCCeEEE--EeCCC-EEEEEeCCCC
Confidence 36666666555 48999999753 2456666666543223455666666 666666 43455 3899998886
Q ss_pred e
Q 016751 348 T 348 (383)
Q Consensus 348 ~ 348 (383)
+
T Consensus 242 ~ 242 (379)
T 3jrp_A 242 Q 242 (379)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00082 Score=66.40 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=32.8
Q ss_pred cCCCCCCHHHHHHHHhcC-ChhhhHHhhccchhhHhh
Q 016751 21 CSSFRLPEDVMIDIFLRL-EVKNLARLRCVCKSWNTL 56 (383)
Q Consensus 21 ~~~~~Lp~Dll~eIL~rL-P~~~l~r~r~VcK~W~~l 56 (383)
.....||+|++.+||.+| |.+++.+++.|||+|+.+
T Consensus 11 ~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 11 LSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp -CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred hccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 345789999999999999 899999999999999987
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.47 Score=42.60 Aligned_cols=199 Identities=9% Similarity=0.054 Sum_probs=106.1
Q ss_pred CceEEEeec--CCCCceEEEEccCccceee-cC----CCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc
Q 016751 120 NGVLCFCSN--GSDRSLIYLWNPLIKKYMT-LP----RPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS 192 (383)
Q Consensus 120 ~Gll~~~~~--~~~~~~~~v~NP~t~~~~~-LP----~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~ 192 (383)
+|++.+..+ ..+...+.++||.|++... +. ..+......++.++. +...+.......+.+++..+++
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~------~~lyv~~~~~~~v~viD~~t~~ 75 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD------GIGWIVVNNSHVIFAIDINTFK 75 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET------TEEEEEEGGGTEEEEEETTTCC
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC------CEEEEEEcCCCEEEEEECcccE
Confidence 455555542 1236789999999988754 21 001111112233332 1222222225689999998876
Q ss_pred e-eeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeee-EeCCCCCCCC-CCCceEEEE
Q 016751 193 W-KNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLST-DDADKYLNV 269 (383)
Q Consensus 193 W-~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~-~~~~~~l~~ 269 (383)
- +.++ ....+... .+.-+|.+|+..... ..|..+|+.+.+.. .++++ .... ......++.
T Consensus 76 ~~~~i~-~~~~p~~i-------~~~~~g~lyv~~~~~--------~~v~~iD~~t~~~~~~i~~g-~~~~~~~~p~~i~~ 138 (328)
T 3dsm_A 76 EVGRIT-GFTSPRYI-------HFLSDEKAYVTQIWD--------YRIFIINPKTYEITGYIECP-DMDMESGSTEQMVQ 138 (328)
T ss_dssp EEEEEE-CCSSEEEE-------EEEETTEEEEEEBSC--------SEEEEEETTTTEEEEEEECT-TCCTTTCBCCCEEE
T ss_pred EEEEcC-CCCCCcEE-------EEeCCCeEEEEECCC--------CeEEEEECCCCeEEEEEEcC-CccccCCCcceEEE
Confidence 5 3333 22111110 233588998876332 48999999988764 45555 3110 001123444
Q ss_pred eCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc----------eEE
Q 016751 270 FDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG----------YGL 339 (383)
Q Consensus 270 ~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~----------~~~ 339 (383)
.+|+|++...... ..+.++-.+. . ..+.+++... ...-+.+..+|++++. . .+. ..+
T Consensus 139 ~~~~lyv~~~~~~---~~v~viD~~t----~--~~~~~i~~g~-~p~~i~~~~dG~l~v~--~-~~~~~~~~~~~~~~~v 205 (328)
T 3dsm_A 139 YGKYVYVNCWSYQ---NRILKIDTET----D--KVVDELTIGI-QPTSLVMDKYNKMWTI--T-DGGYEGSPYGYEAPSL 205 (328)
T ss_dssp ETTEEEEEECTTC---CEEEEEETTT----T--EEEEEEECSS-CBCCCEECTTSEEEEE--B-CCBCTTCSSCBCCCEE
T ss_pred ECCEEEEEcCCCC---CEEEEEECCC----C--eEEEEEEcCC-CccceEEcCCCCEEEE--E-CCCccCCccccCCceE
Confidence 7889988864222 3555554443 2 2223444321 1223455677898888 5 322 259
Q ss_pred EEEeCCCCeEE-EEEE
Q 016751 340 LVYNPHSDTFK-CIGV 354 (383)
Q Consensus 340 ~~yd~~t~~~~-~v~~ 354 (383)
+.+|++|+++. .+.+
T Consensus 206 ~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 206 YRIDAETFTVEKQFKF 221 (328)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEECCCCeEEEEEec
Confidence 99999999876 3444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=95.93 E-value=0.8 Score=40.31 Aligned_cols=207 Identities=13% Similarity=0.140 Sum_probs=105.7
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
...+|.|+..+. ....++.+||.+++...+..+. ...++.+++. .. + ++. ....+.+|+.++++++.+
T Consensus 21 ~~~~~~l~~~d~--~~~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~d---G~-l-~v~--~~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 21 EEVSNSLLFVDI--PAKKVCRWDSFTKQVQRVTMDA---PVSSVALRQS---GG-Y-VAT--IGTKFCALNWKEQSAVVL 88 (297)
T ss_dssp ETTTTEEEEEET--TTTEEEEEETTTCCEEEEECSS---CEEEEEEBTT---SS-E-EEE--ETTEEEEEETTTTEEEEE
T ss_pred ECCCCEEEEEEC--CCCEEEEEECCCCcEEEEeCCC---ceEEEEECCC---CC-E-EEE--ECCeEEEEECCCCcEEEE
Confidence 344566666553 5678999999998765543321 1245667765 33 2 222 266899999999988776
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccCC---CCCCCcEEEEEECCCCeeeEe---CCCCCCCCCCCceEEEEe
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYH---DNSCPWLIVSFDFAKEIFQTV---MMPYDLSTDDADKYLNVF 270 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~---~~~~~~~il~fD~~~~~~~~i---~lP~~~~~~~~~~~l~~~ 270 (383)
. ..+......... ...+.-+|.+|+........ .......|..+|.....-... ..| ..++..
T Consensus 89 ~-~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~p---------ngi~~s 157 (297)
T 3g4e_A 89 A-TVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDIS---------NGLDWS 157 (297)
T ss_dssp E-ECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBE---------EEEEEC
T ss_pred E-ecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccc---------cceEEc
Confidence 5 322111000001 00233368876644332000 012335788888764322211 222 123333
Q ss_pred -CC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEEE---EEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCC
Q 016751 271 -DG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTKL---YTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPH 345 (383)
Q Consensus 271 -~g-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~---~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~ 345 (383)
+| .|+++..... .+.+|.++.. ....... ..+........-+++..+|.|++. ...++ .+..||++
T Consensus 158 pdg~~lyv~~~~~~----~i~~~~~d~~--~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva--~~~~~-~v~~~d~~ 228 (297)
T 3g4e_A 158 LDHKIFYYIDSLSY----SVDAFDYDLQ--TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA--CYNGG-RVIRLDPV 228 (297)
T ss_dssp TTSCEEEEEEGGGT----EEEEEEECTT--TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE--EETTT-EEEEECTT
T ss_pred CCCCEEEEecCCCC----cEEEEeccCC--CCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE--EcCCC-EEEEEcCC
Confidence 34 4666665443 5555555411 1223221 222211102333455668899988 52344 49999999
Q ss_pred CCeE-EEEEEe
Q 016751 346 SDTF-KCIGVH 355 (383)
Q Consensus 346 t~~~-~~v~~~ 355 (383)
|+++ ..+...
T Consensus 229 tG~~~~~i~~p 239 (297)
T 3g4e_A 229 TGKRLQTVKLP 239 (297)
T ss_dssp TCCEEEEEECS
T ss_pred CceEEEEEECC
Confidence 7765 455443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.45 Score=48.28 Aligned_cols=188 Identities=7% Similarity=0.053 Sum_probs=98.6
Q ss_pred CCceEEEEccCccceeecCCCCCCCC-ceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccC
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRS 209 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~~-~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~ 209 (383)
.++.+.|||...++...+........ ...+.+.+. .+.-.++.......+.+|+..++.|.... ..........
T Consensus 29 ~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~---~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~-~~~~h~~~V~- 103 (753)
T 3jro_A 29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP---KFGTILASCSYDGKVLIWKEENGRWSQIA-VHAVHSASVN- 103 (753)
T ss_dssp TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCT---TSCSEEEEEETTSCEEEEEEETTEEEEEE-EECCCSSCEE-
T ss_pred CCCcEEEEecCCCCCccceeccCCcCceEEEEecCC---CCCCEEEEEeCCCeEEEEECCCCcccccc-cccCCCCCeE-
Confidence 46677777766433333322222222 245566544 32334444444678999999999886655 2221110001
Q ss_pred cccceeEE--C--ceEEEEEeeccCCCCCCCcEEEEEECCCCeee-EeCCCCCCCCCCCceEEEEe--------------
Q 016751 210 HINSSVFL--N--GSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNVF-------------- 270 (383)
Q Consensus 210 ~~~~~v~~--~--G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-------------- 270 (383)
++.+ + |.+...+..+ ..|..+|+.+..-. ...+. .... ....+.-.
T Consensus 104 ----~v~~sp~~~~~~l~sgs~d--------g~I~vwdl~~~~~~~~~~~~-~~~~--~v~~l~~~p~~~~~~~~~~~~~ 168 (753)
T 3jro_A 104 ----SVQWAPHEYGPLLLVASSD--------GKVSVVEFKENGTTSPIIID-AHAI--GVNSASWAPATIEEDGEHNGTK 168 (753)
T ss_dssp ----EEEECCGGGCSEEEEEETT--------SEEEEEECCSSSCCCCEEEE-CCSS--CEEEEEECCCC---------CG
T ss_pred ----EEEECCCCCCCEEEEEeCC--------CcEEEEEeecCCCcceeEee-cCCC--ceEEEEecCcccccccccccCC
Confidence 2222 2 5555544443 58999998766221 11111 1100 11122222
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeC---CcEEEEEEeeCCceEEEEEeCCCC
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTER---GKIFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~---g~i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
+|.+.+++..+ ..+.+|.+... ...+.....+.........+.+..+ |.+++. ...++ .+.+||++++
T Consensus 169 d~~~l~sgs~d----g~I~iwd~~~~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s--~s~Dg-~I~iwd~~~~ 239 (753)
T 3jro_A 169 ESRKFVTGGAD----NLVKIWKYNSD--AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDR-TCIIWTQDNE 239 (753)
T ss_dssp GGCCEEEEETT----SCEEEEEEETT--TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EESSS-CEEEEEESSS
T ss_pred CCCEEEEEECC----CeEEEEeccCC--cccceeeeeecCCCCcEEEEEeccCCCCCCEEEE--EecCC-EEEEecCCCC
Confidence 35666666555 48999999863 2446666666533223455666666 777776 43455 4899998886
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.81 Score=39.64 Aligned_cols=192 Identities=10% Similarity=-0.031 Sum_probs=100.4
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCce
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNSW 193 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~W 193 (383)
+....+|.+.+... ....++++|| +++...+..+.......++.+|+. . ++..... ...+.+|+. +++.
T Consensus 104 i~~~~~g~l~v~~~--~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~---g---~l~v~~~~~~~i~~~~~-~g~~ 173 (299)
T 2z2n_A 104 ITEGPNGDIWFTEM--NGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD---N---ALWFTENQNNAIGRITE-SGDI 173 (299)
T ss_dssp EEECTTSCEEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT---S---CEEEEETTTTEEEEECT-TCCE
T ss_pred eEECCCCCEEEEec--CCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC---C---CEEEEeCCCCEEEEEcC-CCcE
Confidence 44455777766652 4568999999 766665433222222256666654 3 2222222 457888888 7776
Q ss_pred eeeccCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-
Q 016751 194 KNIAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF- 270 (383)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~- 270 (383)
+.......... .. ++.+ +|.+|+..... ..|..||+ +.++..+.+| .... ....++..
T Consensus 174 ~~~~~~~~~~~----~~---~i~~~~~g~l~v~~~~~--------~~i~~~~~-~g~~~~~~~~-~~~~--~~~~i~~~~ 234 (299)
T 2z2n_A 174 TEFKIPTPASG----PV---GITKGNDDALWFVEIIG--------NKIGRITT-SGEITEFKIP-TPNA--RPHAITAGA 234 (299)
T ss_dssp EEEECSSTTCC----EE---EEEECTTSSEEEEETTT--------TEEEEECT-TCCEEEEECS-STTC--CEEEEEECS
T ss_pred EEeeCCCCCCc----ce---eEEECCCCCEEEEccCC--------ceEEEECC-CCcEEEEECC-CCCC--CceeEEECC
Confidence 65431111110 01 3333 58887655332 48999999 7777766555 3221 22344444
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
+|+|++..... ..+..+..+ ... ....++........+.+ .+|.+++. . ... .+..||+++++++
T Consensus 235 ~g~l~v~~~~~----~~i~~~d~~-----g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~--~-~~~-~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 235 GIDLWFTEWGA----NKIGRLTSN-----NII-EEYPIQIKSAEPHGICF-DGETIWFA--M-ECD-KIGKLTLIKDNME 299 (299)
T ss_dssp TTCEEEEETTT----TEEEEEETT-----TEE-EEEECSSSSCCEEEEEE-CSSCEEEE--E-TTT-EEEEEEEC-----
T ss_pred CCCEEEeccCC----ceEEEECCC-----Cce-EEEeCCCCCCccceEEe-cCCCEEEE--e-cCC-cEEEEEcCcccCC
Confidence 47887776433 245444331 111 12223311112344555 77889988 5 444 4999999988653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.46 Score=40.88 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=72.7
Q ss_pred eEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEe
Q 016751 215 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM 293 (383)
Q Consensus 215 v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l 293 (383)
.+.+|.||.-++.. ....|..+|+.+.+. ..+++| ... +..-++..+++|+++.-.++ .+|++
T Consensus 27 ~~~~~~LyestG~~------g~S~v~~vD~~tgkv~~~~~l~-~~~---fgeGi~~~~~~ly~ltw~~~------~v~v~ 90 (243)
T 3mbr_X 27 FYLRGHLYESTGET------GRSSVRKVDLETGRILQRAEVP-PPY---FGAGIVAWRDRLIQLTWRNH------EGFVY 90 (243)
T ss_dssp EEETTEEEEEECCT------TSCEEEEEETTTCCEEEEEECC-TTC---CEEEEEEETTEEEEEESSSS------EEEEE
T ss_pred EEECCEEEEECCCC------CCceEEEEECCCCCEEEEEeCC-CCc---ceeEEEEeCCEEEEEEeeCC------EEEEE
Confidence 45667777765543 345899999998876 455777 433 33456777899999875443 45555
Q ss_pred ccCCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeE-EEEEEe
Q 016751 294 KEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTF-KCIGVH 355 (383)
Q Consensus 294 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~~yd~~t~~~-~~v~~~ 355 (383)
+- ..-.++.+++.... ..++..++ .+|+. ++..++..+|++|.+. +.+...
T Consensus 91 D~----~tl~~~~ti~~~~~---Gwglt~dg~~L~vS----dgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 91 DL----ATLTPRARFRYPGE---GWALTSDDSHLYMS----DGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp ET----TTTEEEEEEECSSC---CCEEEECSSCEEEE----CSSSEEEEECTTTCCEEEEEECE
T ss_pred EC----CcCcEEEEEeCCCC---ceEEeeCCCEEEEE----CCCCeEEEEeCCCCeEEEEEEEc
Confidence 54 22567777776531 23444444 56666 3333699999999765 455543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.31 Score=42.48 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=70.0
Q ss_pred eEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEe
Q 016751 215 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM 293 (383)
Q Consensus 215 v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l 293 (383)
.+.+|.||.-++.. ....|..+|+.+.+. ..+++| ... +..-++..+++|+++.-.++ .+|++
T Consensus 49 ~~~~~~LyestG~~------g~S~v~~vD~~Tgkv~~~~~l~-~~~---FgeGit~~g~~ly~ltw~~~------~v~v~ 112 (262)
T 3nol_A 49 FYRNGYFYESTGLN------GRSSIRKVDIESGKTLQQIELG-KRY---FGEGISDWKDKIVGLTWKNG------LGFVW 112 (262)
T ss_dssp EEETTEEEEEEEET------TEEEEEEECTTTCCEEEEEECC-TTC---CEEEEEEETTEEEEEESSSS------EEEEE
T ss_pred EEECCEEEEECCCC------CCceEEEEECCCCcEEEEEecC-Ccc---ceeEEEEeCCEEEEEEeeCC------EEEEE
Confidence 45588888876653 234899999998876 445776 432 23346777899999875543 45555
Q ss_pred ccCCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeE-EEEEE
Q 016751 294 KEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTF-KCIGV 354 (383)
Q Consensus 294 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~~yd~~t~~~-~~v~~ 354 (383)
+- ..-.++.+++... ...++..+| .+|+. ++...+..+|++|.+. ..+..
T Consensus 113 D~----~t~~~~~ti~~~~---eG~glt~dg~~L~~S----dGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 113 NI----RNLRQVRSFNYDG---EGWGLTHNDQYLIMS----DGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp ET----TTCCEEEEEECSS---CCCCEEECSSCEEEC----CSSSEEEEECTTTCSEEEEEEC
T ss_pred EC----ccCcEEEEEECCC---CceEEecCCCEEEEE----CCCCeEEEEcCCCCeEEEEEEe
Confidence 53 1245666777643 112344445 45554 4333699999999664 45554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=95.07 E-value=1.9 Score=39.05 Aligned_cols=194 Identities=10% Similarity=-0.018 Sum_probs=102.0
Q ss_pred EEEccCce-EEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCce
Q 016751 115 VVGSCNGV-LCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSW 193 (383)
Q Consensus 115 ~~~s~~Gl-l~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W 193 (383)
+.-+.+|- |++... .+..+.++|+.+++....-+... ....+.+.+. +.+-++.......+.+|+..+++-
T Consensus 37 ~~~s~dg~~l~~~~~--~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spd----g~~l~~~~~~~~~v~v~d~~~~~~ 108 (391)
T 1l0q_A 37 AVISPDGTKVYVANA--HSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPD----GKQVYVTNMASSTLSVIDTTSNTV 108 (391)
T ss_dssp EEECTTSSEEEEEEG--GGTEEEEEETTTTEEEEEEECSS--SEEEEEECTT----SSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEECCCCCEEEEECC--CCCeEEEEECCCCeEEEEEECCC--CccceEECCC----CCEEEEEECCCCEEEEEECCCCeE
Confidence 44455553 444442 46789999999887655332222 2245666654 233323322246899999998755
Q ss_pred eeeccCCCceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEe-
Q 016751 194 KNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF- 270 (383)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~- 270 (383)
...- ........ . .+.-+|. +|..+... ..|..+|+.+.+.... ... . ....+...
T Consensus 109 ~~~~-~~~~~~~~---~---~~s~dg~~l~~~~~~~--------~~v~~~d~~~~~~~~~~~~~-~-----~~~~~~~~~ 167 (391)
T 1l0q_A 109 AGTV-KTGKSPLG---L---ALSPDGKKLYVTNNGD--------KTVSVINTVTKAVINTVSVG-R-----SPKGIAVTP 167 (391)
T ss_dssp EEEE-ECSSSEEE---E---EECTTSSEEEEEETTT--------TEEEEEETTTTEEEEEEECC-S-----SEEEEEECT
T ss_pred EEEE-eCCCCcce---E---EECCCCCEEEEEeCCC--------CEEEEEECCCCcEEEEEecC-C-----CcceEEECC
Confidence 3322 11111110 0 2223565 44444333 5899999988766443 222 1 11223333
Q ss_pred CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEee--CCceEEEEEeCCCC
Q 016751 271 DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR--HGGYGLLVYNPHSD 347 (383)
Q Consensus 271 ~g~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~~~~yd~~t~ 347 (383)
+|+ |++....+ ..+.+|-+.. ......+.... ....+.+..+|..++.+ .. .++ .+.+||++++
T Consensus 168 dg~~l~~~~~~~----~~v~~~d~~~------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~-~~~~~~~-~v~~~d~~~~ 234 (391)
T 1l0q_A 168 DGTKVYVANFDS----MSISVIDTVT------NSVIDTVKVEA-APSGIAVNPEGTKAYVT-NVDKYFN-TVSMIDTGTN 234 (391)
T ss_dssp TSSEEEEEETTT----TEEEEEETTT------TEEEEEEECSS-EEEEEEECTTSSEEEEE-EECSSCC-EEEEEETTTT
T ss_pred CCCEEEEEeCCC----CEEEEEECCC------CeEEEEEecCC-CccceEECCCCCEEEEE-ecCcCCC-cEEEEECCCC
Confidence 354 44444333 5888987764 23334444332 24445666677555541 21 233 5999999988
Q ss_pred eEE
Q 016751 348 TFK 350 (383)
Q Consensus 348 ~~~ 350 (383)
+..
T Consensus 235 ~~~ 237 (391)
T 1l0q_A 235 KIT 237 (391)
T ss_dssp EEE
T ss_pred eEE
Confidence 654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=94.91 E-value=2.1 Score=38.72 Aligned_cols=188 Identities=7% Similarity=0.016 Sum_probs=102.1
Q ss_pred CCceEEEEccCccceeecCCCC-CCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccC
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPS-LNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRS 209 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~-~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~ 209 (383)
.++.+.|||..+++....-... .......+.+.|. . .-.++.......+.+|+.++...+... ...........
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~---~-~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~v~~ 168 (383)
T 3ei3_B 94 KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF---N-TNQLFVSSIRGATTLRDFSGSVIQVFA-KTDSWDYWYCC 168 (383)
T ss_dssp BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT---E-EEEEEEEETTTEEEEEETTSCEEEEEE-CCCCSSCCEEE
T ss_pred CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC---C-CCEEEEEeCCCEEEEEECCCCceEEEe-ccCCCCCCeEE
Confidence 4677889998887766543322 2222255666653 2 223333333678999999887666554 22110000000
Q ss_pred cccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeC-Ce-EEEEEecCCCCccE
Q 016751 210 HINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFD-GY-LCVFATIPNNTFRS 287 (383)
Q Consensus 210 ~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~-g~-L~~v~~~~~~~~~~ 287 (383)
- ...-+|.....+... ..|..+|+..+....+... .. ....+.-.. |. +.+....+ ..
T Consensus 169 ~---~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~h-~~----~v~~~~~~~~~~~~l~s~~~d----~~ 228 (383)
T 3ei3_B 169 V---DVSVSRQMLATGDST--------GRLLLLGLDGHEIFKEKLH-KA----KVTHAEFNPRCDWLMATSSVD----AT 228 (383)
T ss_dssp E---EEETTTTEEEEEETT--------SEEEEEETTSCEEEEEECS-SS----CEEEEEECSSCTTEEEEEETT----SE
T ss_pred E---EECCCCCEEEEECCC--------CCEEEEECCCCEEEEeccC-CC----cEEEEEECCCCCCEEEEEeCC----CE
Confidence 0 223345554444433 5899999976655555332 11 122333333 44 55555554 49
Q ss_pred EEEEEeccCCCCCCeEEEEEecCCCceeEEEEEee-CCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 288 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTE-RGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 288 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
+.+|.+....... .....+.... ....+.+.. +|..++. ...++ .+.+||+++.+.
T Consensus 229 i~iwd~~~~~~~~--~~~~~~~~~~-~v~~~~~s~~~~~~l~~--~~~d~-~i~iwd~~~~~~ 285 (383)
T 3ei3_B 229 VKLWDLRNIKDKN--SYIAEMPHEK-PVNAAYFNPTDSTKLLT--TDQRN-EIRVYSSYDWSK 285 (383)
T ss_dssp EEEEEGGGCCSTT--CEEEEEECSS-CEEEEEECTTTSCEEEE--EESSS-EEEEEETTBTTS
T ss_pred EEEEeCCCCCccc--ceEEEecCCC-ceEEEEEcCCCCCEEEE--EcCCC-cEEEEECCCCcc
Confidence 9999998643222 2333333332 355566666 7777666 42455 499999988653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=94.77 E-value=1.5 Score=39.77 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=72.3
Q ss_pred cCeEEEEEcCCC--ceeeeccCCCcee------eeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--ee
Q 016751 180 NADAEVYSLRSN--SWKNIAYGFPRSI------EINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IF 249 (383)
Q Consensus 180 ~~~~~vyss~t~--~W~~~~~~~p~~~------~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~ 249 (383)
...+..|+..++ .|+... ..+... ...... ++..+|.+|.....+ .+.++|..+. .|
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~---p~~~~~~v~~~~~~g---------~l~~~d~~tG~~~w 263 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRI-SQATGSTEIDRLSDVDTT---PVVVNGVVFALAYNG---------NLTALDLRSGQIMW 263 (376)
T ss_dssp TTEEEEEETTTCCEEEEEEC-CC-----------CCCCC---CEEETTEEEEECTTS---------CEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCcEEEEEec-ccCCCCcccccccccCCC---cEEECCEEEEEecCc---------EEEEEECCCCcEEe
Confidence 346778887765 677544 222111 001122 677889998865443 7999998765 44
Q ss_pred eEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEE
Q 016751 250 QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIR 329 (383)
Q Consensus 250 ~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~ 329 (383)
+. ..+ . ...+...+|.|++..... .+..+..+. .+..|... ...... ...++ + .++.||+.
T Consensus 264 ~~-~~~-~------~~~~~~~~~~l~~~~~~g-----~l~~~d~~t--G~~~w~~~-~~~~~~-~~~~~-~-~~~~l~v~ 324 (376)
T 3q7m_A 264 KR-ELG-S------VNDFIVDGNRIYLVDQND-----RVMALTIDG--GVTLWTQS-DLLHRL-LTSPV-L-YNGNLVVG 324 (376)
T ss_dssp EE-CCC-C------EEEEEEETTEEEEEETTC-----CEEEEETTT--CCEEEEEC-TTTTSC-CCCCE-E-ETTEEEEE
T ss_pred ec-cCC-C------CCCceEECCEEEEEcCCC-----eEEEEECCC--CcEEEeec-ccCCCc-ccCCE-E-ECCEEEEE
Confidence 43 222 1 233556677887766422 333332222 23445432 011111 12222 2 35678877
Q ss_pred EEeeCCceEEEEEeCCCCeEEE
Q 016751 330 GECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 330 ~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
. .++ .++++|++|++...
T Consensus 325 --~-~~g-~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 325 --D-SEG-YLHWINVEDGRFVA 342 (376)
T ss_dssp --C-TTS-EEEEEETTTCCEEE
T ss_pred --e-CCC-eEEEEECCCCcEEE
Confidence 5 555 49999999998653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=2.2 Score=37.53 Aligned_cols=188 Identities=10% Similarity=-0.004 Sum_probs=86.3
Q ss_pred CCceEEEEccC-ccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcC--CCceeeeccCCCceeee
Q 016751 131 DRSLIYLWNPL-IKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLR--SNSWKNIAYGFPRSIEI 206 (383)
Q Consensus 131 ~~~~~~v~NP~-t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~--t~~W~~~~~~~p~~~~~ 206 (383)
..+.+.+++.. +++...+..........++.++|. +.+ ++.... ...+.+|+.. +++++.+. ..+....
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~-l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~- 85 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD----KRY-LYVGVRPEFRVLAYRIAPDDGALTFAA-ESALPGS- 85 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT----SSE-EEEEETTTTEEEEEEECTTTCCEEEEE-EEECSSC-
T ss_pred CCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC----CCE-EEEeecCCCeEEEEEecCCCCceeecc-ccccCCC-
Confidence 34566677652 333222211111111234666654 233 333332 3688998887 77887655 3221111
Q ss_pred ccCcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCC-eeeEe-CCCCCCCCCCCceEEEEe-CCe-EEEEEecC
Q 016751 207 NRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKE-IFQTV-MMPYDLSTDDADKYLNVF-DGY-LCVFATIP 281 (383)
Q Consensus 207 ~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~-~~~~i-~lP~~~~~~~~~~~l~~~-~g~-L~~v~~~~ 281 (383)
...- .+.-+|. +|...... ..|..||+.+. ....+ ..+ ... ....++.. +|+ |++.....
T Consensus 86 ~~~~---~~s~dg~~l~~~~~~~--------~~i~~~d~~~~~~~~~~~~~~-~~~---~~~~~~~s~dg~~l~~~~~~~ 150 (343)
T 1ri6_A 86 LTHI---STDHQGQFVFVGSYNA--------GNVSVTRLEDGLPVGVVDVVE-GLD---GCHSANISPDNRTLWVPALKQ 150 (343)
T ss_dssp CSEE---EECTTSSEEEEEETTT--------TEEEEEEEETTEEEEEEEEEC-CCT---TBCCCEECTTSSEEEEEEGGG
T ss_pred CcEE---EEcCCCCEEEEEecCC--------CeEEEEECCCCcccccccccc-CCC---CceEEEECCCCCEEEEecCCC
Confidence 0100 2233565 44443322 47888888422 22222 112 111 11122222 344 54444233
Q ss_pred CCCccEEEEEEeccCCCCCCeEEEE--EecCCCc-eeEEEEEeeCCc-EEEEEEeeCCceEEEEEeCC--CCeEE
Q 016751 282 NNTFRSYELWVMKEYGLTESWTKLY--TIEKPQR-IWWPLGFTERGK-IFIRGECRHGGYGLLVYNPH--SDTFK 350 (383)
Q Consensus 282 ~~~~~~l~iW~l~~~~~~~~W~~~~--~i~~~~~-~~~~~~~~~~g~-i~~~~~~~~~~~~~~~yd~~--t~~~~ 350 (383)
..+.+|.++.. ....... .+..... ....+.+..+|+ +++. ...+. .+..||++ +++++
T Consensus 151 ----~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~--~~~~~-~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 151 ----DRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV--NELNS-SVDVWELKDPHGNIE 215 (343)
T ss_dssp ----TEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE--ETTTT-EEEEEESSCTTSCCE
T ss_pred ----CEEEEEEecCC---CceeeecccccccCCCCCcceEEECCCCCEEEEE--eCCCC-EEEEEEecCCCCcEE
Confidence 48899988752 3344433 3332211 234456667776 5555 31334 48899884 45544
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=94.52 E-value=2.5 Score=37.75 Aligned_cols=204 Identities=11% Similarity=0.054 Sum_probs=98.8
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKN 195 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~ 195 (383)
-+.+|-+++... .++.+.++|..++++..+-...... ....+.+.+. + .+ ++.......+.+|+.+++.+..
T Consensus 16 ~s~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~-~~-l~~~~~dg~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 16 WNKDRTQIAICP--NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---S-NR-IVTCGTDRNAYVWTLKGRTWKP 88 (372)
T ss_dssp ECTTSSEEEEEC--SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---T-TE-EEEEETTSCEEEEEEETTEEEE
T ss_pred ECCCCCEEEEEe--CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC---C-CE-EEEEcCCCeEEEEECCCCeeee
Confidence 344554444432 5678889998887533222222111 2255666654 2 23 3333335689999998887764
Q ss_pred eccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCe-e---eEeCCCCCCCCCCCceEEEEe-
Q 016751 196 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI-F---QTVMMPYDLSTDDADKYLNVF- 270 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~-~---~~i~lP~~~~~~~~~~~l~~~- 270 (383)
........... ..- ...-+|.....+... ..|..+|+.+.. + ..+..+ ... ....+...
T Consensus 89 ~~~~~~~~~~v-~~~---~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~-~~~---~i~~~~~~~ 152 (372)
T 1k8k_C 89 TLVILRINRAA-RCV---RWAPNEKKFAVGSGS--------RVISICYFEQENDWWVCKHIKKP-IRS---TVLSLDWHP 152 (372)
T ss_dssp EEECCCCSSCE-EEE---EECTTSSEEEEEETT--------SSEEEEEEETTTTEEEEEEECTT-CCS---CEEEEEECT
T ss_pred eEEeecCCCce-eEE---EECCCCCEEEEEeCC--------CEEEEEEecCCCcceeeeeeecc-cCC---CeeEEEEcC
Confidence 43111111000 000 112245554444433 357777776543 2 222222 111 12233333
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCC-----CCCC-------eEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceE
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYG-----LTES-------WTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYG 338 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~-----~~~~-------W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 338 (383)
+|.+.++...+ ..+.+|.+.... .... -..+..+.........+.+..+|..++. ...++ .
T Consensus 153 ~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~-~ 225 (372)
T 1k8k_C 153 NSVLLAAGSCD----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDS-T 225 (372)
T ss_dssp TSSEEEEEETT----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTT-E
T ss_pred CCCEEEEEcCC----CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE--EeCCC-E
Confidence 45655555544 489999874211 0111 2233344322112445566667766665 42455 4
Q ss_pred EEEEeCCCCeEE
Q 016751 339 LLVYNPHSDTFK 350 (383)
Q Consensus 339 ~~~yd~~t~~~~ 350 (383)
+..||+++++..
T Consensus 226 i~i~d~~~~~~~ 237 (372)
T 1k8k_C 226 VCLADADKKMAV 237 (372)
T ss_dssp EEEEEGGGTTEE
T ss_pred EEEEECCCCcee
Confidence 999999877643
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=94.50 E-value=2.7 Score=38.05 Aligned_cols=187 Identities=11% Similarity=0.015 Sum_probs=98.3
Q ss_pred eEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCC
Q 016751 122 VLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFP 201 (383)
Q Consensus 122 ll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p 201 (383)
.+++... .++.+.++|..+++....-+... ....+.+.+. +.+-++.......+.+|+..+++-...- ..+
T Consensus 3 ~l~vs~~--~d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~d----g~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~ 73 (391)
T 1l0q_A 3 FAYIANS--ESDNISVIDVTSNKVTATIPVGS--NPMGAVISPD----GTKVYVANAHSNDVSIIDTATNNVIATV-PAG 73 (391)
T ss_dssp EEEEEET--TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTT----SSEEEEEEGGGTEEEEEETTTTEEEEEE-ECS
T ss_pred EEEEEcC--CCCEEEEEECCCCeEEEEeecCC--CcceEEECCC----CCEEEEECCCCCeEEEEECCCCeEEEEE-ECC
Confidence 4444443 56788999998877654322211 1245566554 2333233223678999999887553322 122
Q ss_pred ceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEe-CCe-EEEE
Q 016751 202 RSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-DGY-LCVF 277 (383)
Q Consensus 202 ~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~-L~~v 277 (383)
...... .+.-+|. +|..+.. ...|..+|+.+.+.... ..+ . ....++.. +|+ |++.
T Consensus 74 ~~v~~~------~~spdg~~l~~~~~~--------~~~v~v~d~~~~~~~~~~~~~-~-----~~~~~~~s~dg~~l~~~ 133 (391)
T 1l0q_A 74 SSPQGV------AVSPDGKQVYVTNMA--------SSTLSVIDTTSNTVAGTVKTG-K-----SPLGLALSPDGKKLYVT 133 (391)
T ss_dssp SSEEEE------EECTTSSEEEEEETT--------TTEEEEEETTTTEEEEEEECS-S-----SEEEEEECTTSSEEEEE
T ss_pred CCccce------EECCCCCEEEEEECC--------CCEEEEEECCCCeEEEEEeCC-C-----CcceEEECCCCCEEEEE
Confidence 111100 2222455 4444333 25899999998766433 322 1 11234433 355 4444
Q ss_pred EecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc-EEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 278 ATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 278 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
. ... ..+.+|.++. .+. +..+.... ....+.+..+|. +++. ...++ .+..||+++++...
T Consensus 134 ~-~~~---~~v~~~d~~~----~~~--~~~~~~~~-~~~~~~~~~dg~~l~~~--~~~~~-~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 134 N-NGD---KTVSVINTVT----KAV--INTVSVGR-SPKGIAVTPDGTKVYVA--NFDSM-SISVIDTVTNSVID 194 (391)
T ss_dssp E-TTT---TEEEEEETTT----TEE--EEEEECCS-SEEEEEECTTSSEEEEE--ETTTT-EEEEEETTTTEEEE
T ss_pred e-CCC---CEEEEEECCC----CcE--EEEEecCC-CcceEEECCCCCEEEEE--eCCCC-EEEEEECCCCeEEE
Confidence 4 333 5899997764 222 23333322 244456666675 4455 32344 59999999987654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.87 Score=42.46 Aligned_cols=187 Identities=12% Similarity=0.106 Sum_probs=94.1
Q ss_pred CCceEEEEccCccceeecCCC-CCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccC
Q 016751 131 DRSLIYLWNPLIKKYMTLPRP-SLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRS 209 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~-~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~ 209 (383)
.++.+.|||..+++...+-.. ........+.|.|. ..++ ++.......+.+++.+++.-+... ...........
T Consensus 140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~---~~~~-l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~ 214 (435)
T 4e54_B 140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL---NTNQ-FYASSMEGTTRLQDFKGNILRVFA-SSDTINIWFCS 214 (435)
T ss_dssp TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS---CTTE-EEEECSSSCEEEEETTSCEEEEEE-CCSSCSCCCCC
T ss_pred CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC---CCCE-EEEEeCCCEEEEeeccCCceeEEe-ccCCCCccEEE
Confidence 678899999988765443222 22222366777765 3333 333333567889998877655444 21111110110
Q ss_pred cccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CCe-EEEEEecCCCCccE
Q 016751 210 HINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGY-LCVFATIPNNTFRS 287 (383)
Q Consensus 210 ~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~-L~~v~~~~~~~~~~ 287 (383)
. .+.-+|.+...+... ..|..+|+..+....+... . . ....+... .|. +++.+..+ ..
T Consensus 215 ~---~~~~~~~~l~~g~~d--------g~i~~wd~~~~~~~~~~~h---~-~-~v~~v~~~p~~~~~~~s~s~d----~~ 274 (435)
T 4e54_B 215 L---DVSASSRMVVTGDNV--------GNVILLNMDGKELWNLRMH---K-K-KVTHVALNPCCDWFLATASVD----QT 274 (435)
T ss_dssp E---EEETTTTEEEEECSS--------SBEEEEESSSCBCCCSBCC---S-S-CEEEEEECTTCSSEEEEEETT----SB
T ss_pred E---EECCCCCEEEEEeCC--------CcEeeeccCcceeEEEecc---c-c-eEEeeeecCCCceEEEEecCc----ce
Confidence 0 223356655554443 5788899876543322211 1 0 11223322 344 44444444 48
Q ss_pred EEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 288 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 288 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
+.||-+.......... ....... ....+++..+|..++. ...++ .+.+||.++.+
T Consensus 275 v~iwd~~~~~~~~~~~--~~~~h~~-~v~~~~~spdg~~l~s--~~~D~-~i~iwd~~~~~ 329 (435)
T 4e54_B 275 VKIWDLRQVRGKASFL--YSLPHRH-PVNAACFSPDGARLLT--TDQKS-EIRVYSASQWD 329 (435)
T ss_dssp CCEEETTTCCSSSCCS--BCCBCSS-CEEECCBCTTSSEEEE--EESSS-CEEEEESSSSS
T ss_pred eeEEecccccccceEE--Eeeeccc-cccceeECCCCCeeEE--EcCCC-EEEEEECCCCc
Confidence 9999886532111110 0011111 2333445567766666 42455 38899988765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.45 E-value=2.6 Score=37.66 Aligned_cols=206 Identities=7% Similarity=0.119 Sum_probs=99.6
Q ss_pred ceEEEeecCCCCceEEEEccCccceeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCce-eeecc
Q 016751 121 GVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSW-KNIAY 198 (383)
Q Consensus 121 Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W-~~~~~ 198 (383)
|-+++... .++.+.+||..++++..+-...... ....+.+.+. ...-.++.......+.+|+..++.- .....
T Consensus 69 ~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 69 GTILASCS--YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH---EYGPLLLVASSDGKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp CSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG---GGCSEEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred CCEEEEec--cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCC---CCCCEEEEecCCCcEEEEecCCCCceeeEEe
Confidence 44444432 5778999999888644433322222 2255666654 3133344444467889999987632 21110
Q ss_pred -CCCceee---eccCcc----cceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeEe-CCCCCCCCCCCceEE
Q 016751 199 -GFPRSIE---INRSHI----NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQTV-MMPYDLSTDDADKYL 267 (383)
Q Consensus 199 -~~p~~~~---~~~~~~----~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~i-~lP~~~~~~~~~~~l 267 (383)
....... +..... .....-+|.+...+... ..|..||+.+. .+..+ .+. .+.. ....+
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~-~h~~--~v~~~ 212 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD--------NLVKIWKYNSDAQTYVLESTLE-GHSD--WVRDV 212 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEETT--------SCEEEEEEETTTTEEEEEEEEC-CCSS--CEEEE
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC--------CeEEEEEecCCCcceeeEEEEe-cccC--cEeEE
Confidence 1111111 100000 00000045555544433 46888887644 34333 232 2111 12233
Q ss_pred EEeC----CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc--eeEEEEEeeCCcEEEEEEeeCCceEEEE
Q 016751 268 NVFD----GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRGECRHGGYGLLV 341 (383)
Q Consensus 268 ~~~~----g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 341 (383)
.-.. |.+.+....+ ..+.+|.++... ..+... ....... ....+.+..+|..++. ...++. +.+
T Consensus 213 ~~sp~~~~~~~l~s~~~d----g~i~iwd~~~~~--~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~--~~~dg~-i~i 282 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQD----RTCIIWTQDNEQ--GPWKKT-LLKEEKFPDVLWRASWSLSGNVLAL--SGGDNK-VTL 282 (379)
T ss_dssp EECCCCSSSEEEEEEETT----SCEEEEEESSTT--SCCEEE-ESSSSCCSSCEEEEEECSSSCCEEE--EESSSS-EEE
T ss_pred EECCCCCCCCeEEEEeCC----CEEEEEeCCCCC--ccceee-eeccccCCCcEEEEEEcCCCCEEEE--ecCCCc-EEE
Confidence 3332 5565555555 489999998632 223322 2221111 3445566677765555 324553 899
Q ss_pred EeCCC-CeEEEE
Q 016751 342 YNPHS-DTFKCI 352 (383)
Q Consensus 342 yd~~t-~~~~~v 352 (383)
||+++ ++|+.+
T Consensus 283 w~~~~~~~~~~~ 294 (379)
T 3jrp_A 283 WKENLEGKWEPA 294 (379)
T ss_dssp EEEEETTEEEEE
T ss_pred EeCCCCCccccc
Confidence 99884 556655
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=94.40 E-value=3 Score=38.29 Aligned_cols=199 Identities=14% Similarity=0.050 Sum_probs=104.4
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceee-cCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKN 195 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~ 195 (383)
.+.+|-+++... .++.+.++|+.+++... ++... .....+.+++. . .+-++.......+.+|+.++++...
T Consensus 177 ~~~~~~~~~s~~--~d~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~---~-~~l~~~~~~~~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 177 IPEHNELWVSQM--QANAVHVFDLKTLAYKATVDLTG--KWSKILLYDPI---R-DLVYCSNWISEDISVIDRKTKLEIR 248 (433)
T ss_dssp EGGGTEEEEEEG--GGTEEEEEETTTCCEEEEEECSS--SSEEEEEEETT---T-TEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EcCCCEEEEEEC--CCCEEEEEECCCceEEEEEcCCC--CCeeEEEEcCC---C-CEEEEEecCCCcEEEEECCCCcEEE
Confidence 356677666653 56789999998865443 33111 11245666664 2 3322222125689999998876533
Q ss_pred eccCCCceeeeccCcccceeEECceEEEEEeeccCCCC--CCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEe-C
Q 016751 196 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDN--SCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-D 271 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~--~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~ 271 (383)
.- ......... .+.-+|...+.+... .+. .....|..||+.+.+.... ..+ .. ...++.. +
T Consensus 249 ~~-~~~~~~~~~------~~~~~g~~l~~~~~~--~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~~-----~~~~~~~~~ 313 (433)
T 3bws_A 249 KT-DKIGLPRGL------LLSKDGKELYIAQFS--ASNQESGGGRLGIYSMDKEKLIDTIGPP-GN-----KRHIVSGNT 313 (433)
T ss_dssp EC-CCCSEEEEE------EECTTSSEEEEEEEE--SCTTCSCCEEEEEEETTTTEEEEEEEEE-EC-----EEEEEECSS
T ss_pred Ee-cCCCCceEE------EEcCCCCEEEEEECC--CCccccCCCeEEEEECCCCcEEeeccCC-CC-----cceEEECCC
Confidence 22 121111100 222356555555432 000 0235899999987765333 222 11 1123322 3
Q ss_pred C-eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeC--------------Cc
Q 016751 272 G-YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH--------------GG 336 (383)
Q Consensus 272 g-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~--------------~~ 336 (383)
| .|++....+ ..+.+|.++. ...+..++... ....+++..+|..++.+ ... ++
T Consensus 314 g~~l~~~~~~~----~~v~v~d~~~------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~-~~~~~~~~~~~~~~g~~dg 381 (433)
T 3bws_A 314 ENKIYVSDMCC----SKIEVYDLKE------KKVQKSIPVFD-KPNTIALSPDGKYLYVS-CRGPNHPTEGYLKKGLVLG 381 (433)
T ss_dssp TTEEEEEETTT----TEEEEEETTT------TEEEEEEECSS-SEEEEEECTTSSEEEEE-ECCCCCTTTCTTSCCSSCC
T ss_pred CCEEEEEecCC----CEEEEEECCC------CcEEEEecCCC-CCCeEEEcCCCCEEEEE-ecCCCccccccccccccce
Confidence 4 455554444 5899998874 23334444332 24456666777644441 211 23
Q ss_pred eEEEEEeCCCCeEEE
Q 016751 337 YGLLVYNPHSDTFKC 351 (383)
Q Consensus 337 ~~~~~yd~~t~~~~~ 351 (383)
.+..+|+++++...
T Consensus 382 -~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 382 -KVYVIDTTTDTVKE 395 (433)
T ss_dssp -EEEEEETTTTEEEE
T ss_pred -EEEEEECCCCcEEE
Confidence 49999999987654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=2.7 Score=37.25 Aligned_cols=199 Identities=9% Similarity=-0.016 Sum_probs=99.8
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceee-cCCCCCCC------C-ceeEEEeccCCCCCCeEEEEEEe-cCeEEEEE
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNP------R-YLGFGVNSVSGHLDDFKVVTISV-NADAEVYS 187 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~------~-~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vys 187 (383)
...+..+++... ....+.++|+.+++... ++...... . ..++.+++. + ++-++.-.. ...+.+|+
T Consensus 97 s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---g-~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 97 NNTTQTLWFGNT--VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA---T-NTVYISGIGKESVIWVVD 170 (353)
T ss_dssp ETTTTEEEEEET--TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT---T-TEEEEEEESSSCEEEEEE
T ss_pred CCCCCEEEEEec--CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC---C-CEEEEEecCCCceEEEEc
Confidence 334444655553 46789999999987533 33321110 1 145677765 3 332332211 45788999
Q ss_pred cCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeE-eCCCCCCCCCCCceE
Q 016751 188 LRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKY 266 (383)
Q Consensus 188 s~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~~~~~~~~~ 266 (383)
.++++=...- .. .... .... .+.-+|...+..... ..|..+|+.+.+... +..+ ..........
T Consensus 171 ~~~~~~~~~~-~~-~~~~-~~~~---~~s~dg~~l~~~~~~--------~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~ 235 (353)
T 3vgz_A 171 GGNIKLKTAI-QN-TGKM-STGL---ALDSEGKRLYTTNAD--------GELITIDTADNKILSRKKLL-DDGKEHFFIN 235 (353)
T ss_dssp TTTTEEEEEE-CC-CCTT-CCCC---EEETTTTEEEEECTT--------SEEEEEETTTTEEEEEEECC-CSSSCCCEEE
T ss_pred CCCCceEEEe-cC-CCCc-cceE---EECCCCCEEEEEcCC--------CeEEEEECCCCeEEEEEEcC-CCCCCcccce
Confidence 8876432111 10 0000 0100 233356543333322 488999998876643 3443 2111111222
Q ss_pred EEEe-CC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc-EEEEEEeeCCceEEEEEe
Q 016751 267 LNVF-DG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVYN 343 (383)
Q Consensus 267 l~~~-~g-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~~~~yd 343 (383)
++.. +| .|++..... ..+.+|-++. .+- +..++... ...+.+..+|+ +|+. ...++ .+.++|
T Consensus 236 ~~~s~dg~~l~~~~~~~----~~v~~~d~~~----~~~--~~~~~~~~--~~~~~~s~dg~~l~v~--~~~~~-~v~~~d 300 (353)
T 3vgz_A 236 ISLDTARQRAFITDSKA----AEVLVVDTRN----GNI--LAKVAAPE--SLAVLFNPARNEAYVT--HRQAG-KVSVID 300 (353)
T ss_dssp EEEETTTTEEEEEESSS----SEEEEEETTT----CCE--EEEEECSS--CCCEEEETTTTEEEEE--ETTTT-EEEEEE
T ss_pred EEECCCCCEEEEEeCCC----CEEEEEECCC----CcE--EEEEEcCC--CceEEECCCCCEEEEE--ECCCC-eEEEEE
Confidence 4433 34 465554332 4777776653 222 33333322 12255666776 6665 42344 599999
Q ss_pred CCCCeEEE
Q 016751 344 PHSDTFKC 351 (383)
Q Consensus 344 ~~t~~~~~ 351 (383)
.++++...
T Consensus 301 ~~~~~~~~ 308 (353)
T 3vgz_A 301 AKSYKVVK 308 (353)
T ss_dssp TTTTEEEE
T ss_pred CCCCeEEE
Confidence 99987654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=94.20 E-value=3.1 Score=37.65 Aligned_cols=110 Identities=13% Similarity=-0.007 Sum_probs=57.5
Q ss_pred cCceEEEeecCCCCceEEEEccCccceee---cCCCCCCC--CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC--
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMT---LPRPSLNP--RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN-- 191 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~---LP~~~~~~--~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~-- 191 (383)
.+|.|.+.. ....++.+|+.|++.+. ++...... ....+...+. ..+=+|+.......+..++.+++
T Consensus 52 ~~~~v~~~~---~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 52 ADNVVYAAD---RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT---VSGGHVYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp ETTEEEEEC---TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE---EETTEEEEEETTSEEEEEETTTCCE
T ss_pred ECCEEEEEc---CCCeEEEEEccCCceeeeecCccccccccccCcccccCce---EeCCEEEEEcCCCEEEEEECCCCCE
Confidence 467776665 45688889998877542 22111000 0001111111 11112333332457888998776
Q ss_pred ceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeEe
Q 016751 192 SWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQTV 252 (383)
Q Consensus 192 ~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~i 252 (383)
.|+.-. .-.. ... ++..+|.+|..... ..+.+||..+. .|+.-
T Consensus 126 ~W~~~~-~~~~-----~~~---p~~~~~~v~v~~~~---------g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 126 AWQTKV-AGEA-----LSR---PVVSDGLVLIHTSN---------GQLQALNEADGAVKWTVN 170 (376)
T ss_dssp EEEEEC-SSCC-----CSC---CEEETTEEEEECTT---------SEEEEEETTTCCEEEEEE
T ss_pred EEEEeC-CCce-----EcC---CEEECCEEEEEcCC---------CeEEEEECCCCcEEEEEe
Confidence 586543 2111 111 57778888875543 38999998655 46543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.92 Score=40.99 Aligned_cols=197 Identities=15% Similarity=0.079 Sum_probs=90.7
Q ss_pred CceEEEeecCCCCceEEEEccCccceeecCCCCCCCC-ceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc-eeeec
Q 016751 120 NGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS-WKNIA 197 (383)
Q Consensus 120 ~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~-~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~-W~~~~ 197 (383)
+|-+++... .++.+.|||..++++..+-....... ...+.+.+. + ++ ++.......+.+|+..++. |+...
T Consensus 22 ~g~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~-~~-l~s~s~d~~v~vwd~~~~~~~~~~~ 94 (377)
T 3dwl_C 22 QRTEFVTTT--ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK---S-NR-IVTCSQDRNAYVYEKRPDGTWKQTL 94 (377)
T ss_dssp SSSEEECCC--SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT---T-CC-EEEEETTSSEEEC------CCCCEE
T ss_pred CCCEEEEec--CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC---C-CE-EEEEeCCCeEEEEEcCCCCceeeee
Confidence 444443332 46678888888876555444433322 255666654 2 22 3333335689999998876 65443
Q ss_pred cCCCceeeeccCcccceeE--ECceEEEEEeeccCCCCCCCcEEEEEECCCCe----eeEeCCCCCCCCCCCceEEEEe-
Q 016751 198 YGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI----FQTVMMPYDLSTDDADKYLNVF- 270 (383)
Q Consensus 198 ~~~p~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~----~~~i~lP~~~~~~~~~~~l~~~- 270 (383)
.......... ++. -+|.....+... ..|..+|+.+.. ...+.-| ... ....+.-.
T Consensus 95 -~~~~~~~~v~-----~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~-h~~---~v~~~~~~~ 156 (377)
T 3dwl_C 95 -VLLRLNRAAT-----FVRWSPNEDKFAVGSGA--------RVISVCYFEQENDWWVSKHLKRP-LRS---TILSLDWHP 156 (377)
T ss_dssp -ECCCCSSCEE-----EEECCTTSSCCEEEESS--------SCEEECCC-----CCCCEEECSS-CCS---CEEEEEECT
T ss_pred -EecccCCceE-----EEEECCCCCEEEEEecC--------CeEEEEEECCcccceeeeEeecc-cCC---CeEEEEEcC
Confidence 1111000000 121 145444333332 468888887765 2333332 111 12233333
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCC-----CCCCe-------EEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceE
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYG-----LTESW-------TKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYG 338 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~-----~~~~W-------~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 338 (383)
+|++.+....+ ..+.+|.++... ....| ..+..+.... ....+.+..+|..++. ...++ .
T Consensus 157 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~--~~~d~-~ 228 (377)
T 3dwl_C 157 NNVLLAAGCAD----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG-WVHAVGFSPSGNALAY--AGHDS-S 228 (377)
T ss_dssp TSSEEEEEESS----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSS-SEEEEEECTTSSCEEE--EETTT-E
T ss_pred CCCEEEEEeCC----CEEEEEEEEecccCCCccccccccccchhhhhhcccCCc-eEEEEEECCCCCEEEE--EeCCC-c
Confidence 35655555544 489999985321 11112 2222331111 3455666677766555 32455 4
Q ss_pred EEEEeCCCCeE
Q 016751 339 LLVYNPHSDTF 349 (383)
Q Consensus 339 ~~~yd~~t~~~ 349 (383)
+..||+++++.
T Consensus 229 i~iwd~~~~~~ 239 (377)
T 3dwl_C 229 VTIAYPSAPEQ 239 (377)
T ss_dssp EC-CEECSTTS
T ss_pred EEEEECCCCCC
Confidence 88999888753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=93.65 E-value=1 Score=39.21 Aligned_cols=110 Identities=13% Similarity=0.013 Sum_probs=67.9
Q ss_pred eEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEe
Q 016751 215 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM 293 (383)
Q Consensus 215 v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l 293 (383)
.+.+|.||.-++.. ..|..+|+.+.+. ..+ +| ... +..-++..+++|+++.-.++ .+|++
T Consensus 61 ~~~~~~Ly~stG~~--------g~v~~iD~~Tgkv~~~~-l~-~~~---FgeGit~~g~~Ly~ltw~~~------~v~V~ 121 (268)
T 3nok_A 61 VFHQGHFFESTGHQ--------GTLRQLSLESAQPVWME-RL-GNI---FAEGLASDGERLYQLTWTEG------LLFTW 121 (268)
T ss_dssp EEETTEEEEEETTT--------TEEEECCSSCSSCSEEE-EC-TTC---CEEEEEECSSCEEEEESSSC------EEEEE
T ss_pred EEECCEEEEEcCCC--------CEEEEEECCCCcEEeEE-CC-CCc---ceeEEEEeCCEEEEEEccCC------EEEEE
Confidence 34567777766654 4599999998866 445 66 432 22346777899999865443 45566
Q ss_pred ccCCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeE-EEEEE
Q 016751 294 KEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTF-KCIGV 354 (383)
Q Consensus 294 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~~yd~~t~~~-~~v~~ 354 (383)
+- ..-.++.+++.... ..+++.+| .+|+. ++...+..+|++|.+. +.+..
T Consensus 122 D~----~Tl~~~~ti~~~~e---GwGLt~Dg~~L~vS----dGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 122 SG----MPPQRERTTRYSGE---GWGLCYWNGKLVRS----DGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp ET----TTTEEEEEEECSSC---CCCEEEETTEEEEE----CSSSEEEEECTTTCCEEEEEEC
T ss_pred EC----CcCcEEEEEeCCCc---eeEEecCCCEEEEE----CCCCEEEEEcCCCCeEEEEEEe
Confidence 54 22466677776531 12333344 55555 3333699999999765 45554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=93.53 E-value=3.6 Score=36.11 Aligned_cols=193 Identities=11% Similarity=0.072 Sum_probs=100.9
Q ss_pred cCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCce--ee
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNSW--KN 195 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~W--~~ 195 (383)
..+.+++... ....+.++|+.+++....-+.+.. . .++.+++. + .+ ++.... ...+.+|+..++.- +.
T Consensus 8 ~~~~~~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~-~-~~~~~s~d---g-~~-l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 8 TSNFGIVVEQ--HLRRISFFSTDTLEILNQITLGYD-F-VDTAITSD---C-SN-VVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp CCCEEEEEEG--GGTEEEEEETTTCCEEEEEECCCC-E-EEEEECSS---S-CE-EEEEESTTCEEEEEECSSSSCEEEE
T ss_pred CCCEEEEEec--CCCeEEEEeCcccceeeeEEccCC-c-ceEEEcCC---C-CE-EEEEeCCCCeEEEEECCCCceeEEe
Confidence 3455555553 567899999999887554332211 1 25666664 3 33 333332 55889999988764 22
Q ss_pred ecc-CCCce-eeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEe-C
Q 016751 196 IAY-GFPRS-IEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-D 271 (383)
Q Consensus 196 ~~~-~~p~~-~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~ 271 (383)
... ..|.. . .+.-+|...+..... .....|..+|+.+.+.... +.+ . ....++.. +
T Consensus 79 ~~~~~~~~~~~---------~~s~dg~~l~~~~~~-----~~~~~i~v~d~~~~~~~~~~~~~-~-----~~~~~~~spd 138 (331)
T 3u4y_A 79 IQEGQSSMADV---------DITPDDQFAVTVTGL-----NHPFNMQSYSFLKNKFISTIPIP-Y-----DAVGIAISPN 138 (331)
T ss_dssp EEECSSCCCCE---------EECTTSSEEEECCCS-----SSSCEEEEEETTTTEEEEEEECC-T-----TEEEEEECTT
T ss_pred cccCCCCccce---------EECCCCCEEEEecCC-----CCcccEEEEECCCCCeEEEEECC-C-----CccceEECCC
Confidence 220 11111 1 223345533332221 1122899999988765432 332 1 11234443 3
Q ss_pred Ce-EEEEEecCCCCccEEEEEEeccCCCCCCeEE-EEEecCCCceeEEEEEeeCCc-EEEEEEeeCCceEEEEEeCCCCe
Q 016751 272 GY-LCVFATIPNNTFRSYELWVMKEYGLTESWTK-LYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 272 g~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
|+ |++...... ..+.+|.++..+ ..... ...+.... ....+.+..+|+ +++. ...+. .+.+||+++++
T Consensus 139 g~~l~~~~~~~~---~~i~~~~~~~~g--~~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~--~~~~~-~v~v~d~~~~~ 209 (331)
T 3u4y_A 139 GNGLILIDRSSA---NTVRRFKIDADG--VLFDTGQEFISGGT-RPFNITFTPDGNFAFVA--NLIGN-SIGILETQNPE 209 (331)
T ss_dssp SSCEEEEEETTT---TEEEEEEECTTC--CEEEEEEEEECSSS-SEEEEEECTTSSEEEEE--ETTTT-EEEEEECSSTT
T ss_pred CCEEEEEecCCC---ceEEEEEECCCC--cEeecCCccccCCC-CccceEECCCCCEEEEE--eCCCC-eEEEEECCCCc
Confidence 54 666665543 339999998532 11111 12222221 244456667786 6666 42344 59999999877
Q ss_pred E
Q 016751 349 F 349 (383)
Q Consensus 349 ~ 349 (383)
.
T Consensus 210 ~ 210 (331)
T 3u4y_A 210 N 210 (331)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=93.52 E-value=3.9 Score=36.44 Aligned_cols=211 Identities=8% Similarity=-0.041 Sum_probs=106.7
Q ss_pred eEEEccCceEEEeecCCCCceEEEEccCcccee-ecCCCCCC--C-CceeEEEeccCCCCCCeEEEEEEe--cCeEEEEE
Q 016751 114 DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYM-TLPRPSLN--P-RYLGFGVNSVSGHLDDFKVVTISV--NADAEVYS 187 (383)
Q Consensus 114 ~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~-~LP~~~~~--~-~~~~~g~d~~~~~~~~ykVv~~~~--~~~~~vys 187 (383)
.+..+.+|.+.+... ....+.++|+.|++.. .++..... . ...++.++ .+ +++.... ...+.+++
T Consensus 88 ~i~~~~~g~lyv~~~--~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~-----~~--~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQI--WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY-----GK--YVYVNCWSYQNRILKID 158 (328)
T ss_dssp EEEEEETTEEEEEEB--SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE-----TT--EEEEEECTTCCEEEEEE
T ss_pred EEEEeCCCeEEEEEC--CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE-----CC--EEEEEcCCCCCEEEEEE
Confidence 344456787766663 4678999999998754 34332200 0 11233332 22 2222221 45789999
Q ss_pred cCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCC--CCCCCcEEEEEECCCCeee-EeCCCCCCCCCCCc
Q 016751 188 LRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYH--DNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTDDAD 264 (383)
Q Consensus 188 s~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~--~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~ 264 (383)
..+++....- ...... .. - .+.-+|.+|......... .......|..+|+.+.+.. .+.+| ... ..
T Consensus 159 ~~t~~~~~~i-~~g~~p--~~-i---~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~---~p 227 (328)
T 3dsm_A 159 TETDKVVDEL-TIGIQP--TS-L---VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGD---WP 227 (328)
T ss_dssp TTTTEEEEEE-ECSSCB--CC-C---EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTC---CC
T ss_pred CCCCeEEEEE-EcCCCc--cc-e---EEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-CCC---Cc
Confidence 9988653222 111111 00 0 233368877765432000 0001258999999988775 45666 332 22
Q ss_pred eEEEEe--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEee-CCcEEEEEEe----eCCce
Q 016751 265 KYLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTE-RGKIFIRGEC----RHGGY 337 (383)
Q Consensus 265 ~~l~~~--~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~~~----~~~~~ 337 (383)
..++.. ++.|+++. . .||+++-.. .+......++.......-+++.. +|.||+. . ...+
T Consensus 228 ~~la~~~d~~~lyv~~-------~--~v~~~d~~t--~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva--~~~~y~~~~- 293 (328)
T 3dsm_A 228 SEVQLNGTRDTLYWIN-------N--DIWRMPVEA--DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA--DAIDYQQQG- 293 (328)
T ss_dssp EEEEECTTSCEEEEES-------S--SEEEEETTC--SSCCSSCSBCCCSSCEEEEEECTTTCCEEEE--ECTTSSSEE-
T ss_pred eeEEEecCCCEEEEEc-------c--EEEEEECCC--CceeeeeeecCCCCceEEEEEcCCCCeEEEE--cccccccCC-
Confidence 345555 34566542 1 455555321 11111001111010133355553 6788888 3 2233
Q ss_pred EEEEEeCCCCeEEEEEEecCc
Q 016751 338 GLLVYNPHSDTFKCIGVHLPY 358 (383)
Q Consensus 338 ~~~~yd~~t~~~~~v~~~~~~ 358 (383)
.+.+||++.+..+.+.....|
T Consensus 294 ~V~v~d~~g~~~~~i~~G~~P 314 (328)
T 3dsm_A 294 IVYRYSPQGKLIDEFYVGIIP 314 (328)
T ss_dssp EEEEECTTCCEEEEEEEEESE
T ss_pred EEEEECCCCCEEEEEEeccCc
Confidence 599999996666777765443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.30 E-value=7.7 Score=39.20 Aligned_cols=187 Identities=13% Similarity=0.095 Sum_probs=100.2
Q ss_pred CceEEEEccCccceeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCc-eeeeccC
Q 016751 132 RSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPR-SIEINRS 209 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~-~~~~~~~ 209 (383)
...++++||.++++..++...... ....+..|+. + + +.+.....+..|+..++.|+... ..+. ......-
T Consensus 426 ~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~---g---~-lwigt~~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~i 497 (781)
T 3v9f_A 426 LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN---K---K-IWIGTHAGVFVIDLASKKVIHHY-DTSNSQLLENFV 497 (781)
T ss_dssp TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT---S---E-EEEEETTEEEEEESSSSSCCEEE-CTTTSSCSCSCE
T ss_pred cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC---C---C-EEEEECCceEEEeCCCCeEEecc-cCccccccccee
Confidence 356888899988888776431111 1244444432 1 1 22222467889999999887765 2220 0000000
Q ss_pred cccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CCeEEEEEecCCCCcc
Q 016751 210 HINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFR 286 (383)
Q Consensus 210 ~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~~v~~~~~~~~~ 286 (383)
. +++. +|.+ |++... ..+..||..++++..+..+ ..........+.+. +|.|.+.+. .+
T Consensus 498 ~---~i~~d~~g~l-Wigt~~--------~Gl~~~~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lWi~T~-~G---- 559 (781)
T 3v9f_A 498 R---SIAQDSEGRF-WIGTFG--------GGVGIYTPDMQLVRKFNQY-EGFCSNTINQIYRSSKGQMWLATG-EG---- 559 (781)
T ss_dssp E---EEEECTTCCE-EEEESS--------SCEEEECTTCCEEEEECTT-TTCSCSCEEEEEECTTSCEEEEET-TE----
T ss_pred E---EEEEcCCCCE-EEEEcC--------CCEEEEeCCCCeEEEccCC-CCCCCCeeEEEEECCCCCEEEEEC-CC----
Confidence 0 2322 4665 556542 2689999999999887544 44332233345553 477777653 21
Q ss_pred EEEEEEeccCCCCCCeEEEEEec-CCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 016751 287 SYELWVMKEYGLTESWTKLYTIE-KPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 287 ~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v~ 353 (383)
+ +..++. .+..+.....-. +....+..+....+|.|++. . ..+ +..||+++++++...
T Consensus 560 -l-v~~~d~--~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~--t-~~G--l~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 560 -L-VCFPSA--RNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS--T-NTG--ISCYITSKKCFYTYD 618 (781)
T ss_dssp -E-EEESCT--TTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE--C-SSC--EEEEETTTTEEEEEC
T ss_pred -c-eEEECC--CCCcEEEccccCCCCCceEEEEEECCCCCEEEE--c-CCc--eEEEECCCCceEEec
Confidence 2 122222 123333321111 11101333444567889998 5 444 999999999887764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=93.22 E-value=3.5 Score=36.32 Aligned_cols=201 Identities=8% Similarity=0.063 Sum_probs=93.8
Q ss_pred EEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCC-ceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCcee
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWK 194 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~-~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~ 194 (383)
..+.+|-.+.... .++.+.|||..+++...+-....... ...+.+.+. ...-.++.......+.+++.+++.|+
T Consensus 20 ~~s~~g~~lasgs--~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~---~~~~~l~s~s~D~~v~iWd~~~~~~~ 94 (316)
T 3bg1_A 20 QMDYYGTRLATCS--SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP---MYGNILASCSYDRKVIIWREENGTWE 94 (316)
T ss_dssp EECGGGCEEEEEE--TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG---GGSSCEEEEETTSCEEEECCSSSCCC
T ss_pred eEcCCCCEEEEEe--CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC---CCCCEEEEEECCCEEEEEECCCCcce
Confidence 3345565555543 57788888887765332222211111 244555332 11122333333668899999988886
Q ss_pred eeccCCCceeeeccCcccceeEE--C--ceEEEEEeeccCCCCCCCcEEEEEECCCC-eeeEe-CCCCCCCCCCCceEEE
Q 016751 195 NIAYGFPRSIEINRSHINSSVFL--N--GSVHWCARFSCYHDNSCPWLIVSFDFAKE-IFQTV-MMPYDLSTDDADKYLN 268 (383)
Q Consensus 195 ~~~~~~p~~~~~~~~~~~~~v~~--~--G~lYw~~~~~~~~~~~~~~~il~fD~~~~-~~~~i-~lP~~~~~~~~~~~l~ 268 (383)
... .+........ ++.+ + |.+...+..+ ..|..+|+.++ .|... .+. .+..........
T Consensus 95 ~~~-~~~~h~~~V~-----~v~~~p~~~g~~lasgs~D--------~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~~ 159 (316)
T 3bg1_A 95 KSH-EHAGHDSSVN-----SVCWAPHDYGLILACGSSD--------GAISLLTYTGEGQWEVKKINN-AHTIGCNAVSWA 159 (316)
T ss_dssp EEE-EECCCSSCCC-----EEEECCTTTCSCEEEECSS--------SCEEEEEECSSSCEEECCBTT-SSSSCBCCCEEC
T ss_pred EEE-EccCCCCceE-----EEEECCCCCCcEEEEEcCC--------CCEEEEecCCCCCcceeeeec-cccCCcceEEEc
Confidence 543 2111000000 2222 2 4333333322 46777887765 45332 111 111000000000
Q ss_pred ----------Ee------CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCC----cEEE
Q 016751 269 ----------VF------DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG----KIFI 328 (383)
Q Consensus 269 ----------~~------~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g----~i~~ 328 (383)
.. .+++.+.+..+ ..+.+|.++. ...|.....+.........+++..++ .+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D----~~v~lWd~~~---~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCD----NLIKLWKEEE---DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTT----SBCCEEEECT---TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred cccCCccccccccccCccccceEEEecCC----CeEEEEEeCC---CCccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 00 12333333333 5899999864 24577666554322134445554443 4555
Q ss_pred EEEeeCCceEEEEEeCCC
Q 016751 329 RGECRHGGYGLLVYNPHS 346 (383)
Q Consensus 329 ~~~~~~~~~~~~~yd~~t 346 (383)
. ...++ .+..+|+++
T Consensus 233 s--~s~D~-~v~iw~~~~ 247 (316)
T 3bg1_A 233 S--CSQDG-RVFIWTCDD 247 (316)
T ss_dssp E--EETTC-EEEEEECSS
T ss_pred E--EcCCC-eEEEEEccC
Confidence 5 32455 488898876
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.13 E-value=4.7 Score=36.25 Aligned_cols=198 Identities=11% Similarity=-0.010 Sum_probs=98.1
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCC---CCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCce
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRP---SLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSW 193 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~---~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W 193 (383)
-+.++.++... .++.+.|||..+++....... .+......+.+.+. + . .++.......+.+++.+++.=
T Consensus 90 ~s~d~~l~~~s---~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd---g-~-~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 90 WVGERGILVAS---DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS---G-T-QAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp EETTTEEEEEE---TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT---S-S-EEEEEETTSCEEEEETTTTEE
T ss_pred EeCCCeEEEEE---CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC---C-C-EEEEEeCCCeEEEEECCCCcE
Confidence 34556666554 578899999988765433221 11112245566554 2 2 333333366789999887643
Q ss_pred eeeccCCCceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCeee-EeCCCCCCCCCCCceEEEEe-
Q 016751 194 KNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNVF- 270 (383)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~- 270 (383)
...-.......... ...-+|. +...+..+ ..|..+|+.+.+-. .+..+ ... .....+...
T Consensus 162 ~~~~~~h~~~V~~~------~~~~~~~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~-~~~--~~~~~~~~~p 224 (344)
T 4gqb_B 162 LSSYRAHAAQVTCV------AASPHKDSVFLSCSED--------NRILLWDTRCPKPASQIGCS-APG--YLPTSLAWHP 224 (344)
T ss_dssp EEEECCCSSCEEEE------EECSSCTTEEEEEETT--------SCEEEEETTSSSCEEECC-----C--CCEEEEEECS
T ss_pred EEEEcCcCCceEEE------EecCCCCCceeeeccc--------cccccccccccceeeeeecc-eee--ccceeeeecC
Confidence 21110111111000 1122342 33333322 47888999876543 33322 111 011223332
Q ss_pred -CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCe
Q 016751 271 -DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 271 -~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
++++.+.+..+ ..+.+|-++.. ..+..+.........+++..+| .++.. ...++ .+.++|.++++
T Consensus 225 ~~~~~l~sg~~d----g~v~~wd~~~~------~~~~~~~~h~~~v~~v~fsp~g~~~las--gs~D~-~i~vwd~~~~~ 291 (344)
T 4gqb_B 225 QQSEVFVFGDEN----GTVSLVDTKST------SCVLSSAVHSQCVTGLVFSPHSVPFLAS--LSEDC-SLAVLDSSLSE 291 (344)
T ss_dssp SCTTEEEEEETT----SEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEE--EETTS-CEEEECTTCCE
T ss_pred CCCcceEEeccC----CcEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCeEEEE--EeCCC-eEEEEECCCCc
Confidence 35566555554 48999987642 1222333221134556666666 45554 32455 49999999987
Q ss_pred EEEE
Q 016751 349 FKCI 352 (383)
Q Consensus 349 ~~~v 352 (383)
...+
T Consensus 292 ~~~~ 295 (344)
T 4gqb_B 292 LFRS 295 (344)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6544
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=93.05 E-value=2.4 Score=37.74 Aligned_cols=119 Identities=11% Similarity=0.009 Sum_probs=66.1
Q ss_pred EECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCC-CCCCCCCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEe
Q 016751 216 FLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMM-PYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVM 293 (383)
Q Consensus 216 ~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~l-P~~~~~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l 293 (383)
.-+|.+|...... ....|..||+.++..+.+.. + .... ....++.. +|+..++..... ..+.+|.+
T Consensus 48 spdg~l~~~~~~~------~~~~v~~~~~~~g~~~~~~~~~-~~~~--~p~~~a~spdg~~l~~~~~~~---~~v~v~~~ 115 (347)
T 3hfq_A 48 SAKDCLYSVDKED------DEGGIAAWQIDGQTAHKLNTVV-APGT--PPAYVAVDEARQLVYSANYHK---GTAEVMKI 115 (347)
T ss_dssp CTTCEEEEEEEET------TEEEEEEEEEETTEEEEEEEEE-EESC--CCSEEEEETTTTEEEEEETTT---TEEEEEEE
T ss_pred ccCCeEEEEEecC------CCceEEEEEecCCcEEEeeeee-cCCC--CCEEEEECCCCCEEEEEeCCC---CEEEEEEe
Confidence 3378888877631 12489999998887766522 2 1111 12234444 465433433333 58999999
Q ss_pred ccCCCCCCeEEEEEecCCCc---------eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCC-CCeEEEE
Q 016751 294 KEYGLTESWTKLYTIEKPQR---------IWWPLGFTERGKIFIRGECRHGGYGLLVYNPH-SDTFKCI 352 (383)
Q Consensus 294 ~~~~~~~~W~~~~~i~~~~~---------~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~-t~~~~~v 352 (383)
+.. .....+..+..... ....+++..+|++++. ...+. .+..||++ ++++..+
T Consensus 116 ~~~---g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~--~~~~~-~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 116 AAD---GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVI--DLGSD-KVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp CTT---SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEE--ETTTT-EEEEEEECTTSCEEEE
T ss_pred CCC---CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEE--eCCCC-EEEEEEECCCCcEEEe
Confidence 753 23444444433210 1334666778886665 41233 58899988 5666543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=93.04 E-value=5.4 Score=36.69 Aligned_cols=199 Identities=13% Similarity=0.111 Sum_probs=101.8
Q ss_pred ccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCC-ceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 118 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 118 s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~-~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
|.+++|.+.. +..++|||..|++...+-....... ...+.+.+. +.+-+ .......+.+|+.++++-...
T Consensus 114 S~~n~lAvgl----d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd----g~~la-sgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 114 SSGNVLAVAL----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE----GNYLA-VGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp CTTSEEEEEE----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT----SSEEE-EEETTSCEEEEETTTTEEEEE
T ss_pred CCCCEEEEEe----CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC----CCEEE-EEECCCeEEEEEcCCCcEEEE
Confidence 5567665543 6789999999998776544333322 256667664 33333 223367899999988643211
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CCeEE
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLC 275 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~ 275 (383)
- .-... ... ++..+|.+-..+... ..+..+|..........+. .... ....+... +|...
T Consensus 185 ~-~~h~~----~v~---~~s~~~~~l~sgs~d--------~~i~~~d~~~~~~~~~~~~-~h~~--~~~~~~~~~~g~~l 245 (420)
T 4gga_A 185 M-TSHSA----RVG---SLSWNSYILSSGSRS--------GHIHHHDVRVAEHHVATLS-GHSQ--EVCGLRWAPDGRHL 245 (420)
T ss_dssp E-CCCSS----CEE---EEEEETTEEEEEETT--------SEEEEEETTSSSCEEEEEE-CCSS--CEEEEEECTTSSEE
T ss_pred E-eCCCC----ceE---EEeeCCCEEEEEeCC--------CceeEeeecccceeeEEec-cccc--ceeeeeecCCCCee
Confidence 1 11110 111 456667655544433 5788888776544333222 1111 11222222 35555
Q ss_pred EEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEee-CCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 276 VFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTE-RGKIFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 276 ~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
+....+ ..+.+|...... ..+...............+++.. ++.++..+....++ .+..+|.++++...
T Consensus 246 ~s~~~D----~~v~i~~~~~~~--~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~-~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 246 ASGGND----NLVNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR-HIRIWNVCSGACLS 315 (420)
T ss_dssp EEEETT----SCEEEEESSCCS--SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC-EEEEEETTTTEEEE
T ss_pred eeeecc----ccceEEeecccc--ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC-EEEEEeCCccccce
Confidence 555544 488999886532 12222222221111233344443 33555442121234 58889999887544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=92.93 E-value=4.1 Score=35.03 Aligned_cols=202 Identities=9% Similarity=0.069 Sum_probs=106.8
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCC----CceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcC
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP----RYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLR 189 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~----~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~ 189 (383)
+..+.+|.+.+.+. ....+.++|+..+....++...... ...++.+++. .+ .-++.-.. ...+.+|+..
T Consensus 35 v~~~~~g~l~v~~~--~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~---~g-~l~v~~~~~~~~i~~~d~~ 108 (286)
T 1q7f_A 35 VAVNAQNDIIVADT--NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN---SG-DIIVTERSPTHQIQIYNQY 108 (286)
T ss_dssp EEECTTCCEEEEEG--GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETT---TT-EEEEEECGGGCEEEEECTT
T ss_pred EEECCCCCEEEEEC--CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcC---CC-eEEEEcCCCCCEEEEECCC
Confidence 34455677766653 4567899998866655565422111 1256666433 22 22222211 5678888844
Q ss_pred CCceeeeccCCCceeeeccCcccceeE--ECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEE
Q 016751 190 SNSWKNIAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYL 267 (383)
Q Consensus 190 t~~W~~~~~~~p~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l 267 (383)
...-+.+. ....... . ++. -+|.+|+..... ..|..||...+....+..+ .... ....+
T Consensus 109 g~~~~~~~-~~~~~~~----~---~i~~~~~g~l~v~~~~~--------~~i~~~~~~g~~~~~~~~~-~~~~--~p~~i 169 (286)
T 1q7f_A 109 GQFVRKFG-ATILQHP----R---GVTVDNKGRIIVVECKV--------MRVIIFDQNGNVLHKFGCS-KHLE--FPNGV 169 (286)
T ss_dssp SCEEEEEC-TTTCSCE----E---EEEECTTSCEEEEETTT--------TEEEEECTTSCEEEEEECT-TTCS--SEEEE
T ss_pred CcEEEEec-CccCCCc----e---EEEEeCCCCEEEEECCC--------CEEEEEcCCCCEEEEeCCC-CccC--CcEEE
Confidence 33323332 1111100 1 333 368887755433 5899999877666655433 2211 12335
Q ss_pred EEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC-c-eeEEEEEeeCCcEEEEEEeeCCceEEEEEeC
Q 016751 268 NVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ-R-IWWPLGFTERGKIFIRGECRHGGYGLLVYNP 344 (383)
Q Consensus 268 ~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~-~-~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~ 344 (383)
+.. +|+|++..... ..+.+|..+. .. +..+.... + ...-+++..+|.+++. ...+...+..||.
T Consensus 170 ~~~~~g~l~v~~~~~----~~i~~~~~~g-----~~--~~~~~~~g~~~~p~~i~~d~~G~l~v~--~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 170 VVNDKQEIFISDNRA----HCVKVFNYEG-----QY--LRQIGGEGITNYPIGVGINSNGEILIA--DNHNNFNLTIFTQ 236 (286)
T ss_dssp EECSSSEEEEEEGGG----TEEEEEETTC-----CE--EEEESCTTTSCSEEEEEECTTCCEEEE--ECSSSCEEEEECT
T ss_pred EECCCCCEEEEECCC----CEEEEEcCCC-----CE--EEEEccCCccCCCcEEEECCCCCEEEE--eCCCCEEEEEECC
Confidence 544 47888776544 3677765421 12 22332221 1 2344566677889888 5222214999998
Q ss_pred CCCeEEEEEE
Q 016751 345 HSDTFKCIGV 354 (383)
Q Consensus 345 ~t~~~~~v~~ 354 (383)
+.+.++.+..
T Consensus 237 ~g~~~~~~~~ 246 (286)
T 1q7f_A 237 DGQLISALES 246 (286)
T ss_dssp TSCEEEEEEE
T ss_pred CCCEEEEEcc
Confidence 8777766654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=92.71 E-value=4.8 Score=35.25 Aligned_cols=182 Identities=14% Similarity=0.084 Sum_probs=85.1
Q ss_pred CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCc
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSH 210 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~ 210 (383)
.++.+.++|......................+.+. .....++.......+.+|+.+++.-...-..........
T Consensus 148 ~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~--- 221 (340)
T 4aow_A 148 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN---SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV--- 221 (340)
T ss_dssp TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC---SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---
T ss_pred CCCeEEEEEeCCCceEEEEeccccCcccceEEccC---CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEE---
Confidence 34556666665544333322221111123333333 222223332325678888888765432220111111100
Q ss_pred ccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeE-eCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEE
Q 016751 211 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYE 289 (383)
Q Consensus 211 ~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~ 289 (383)
.+.-+|.+...+..+ ..|..+|+.+..-.. +... . ....+....+...++...+ ..+.
T Consensus 222 ---~~s~~~~~l~s~s~D--------g~i~iwd~~~~~~~~~~~~~-~-----~v~~~~~~~~~~~~~~~~d----~~i~ 280 (340)
T 4aow_A 222 ---TVSPDGSLCASGGKD--------GQAMLWDLNEGKHLYTLDGG-D-----IINALCFSPNRYWLCAATG----PSIK 280 (340)
T ss_dssp ---EECTTSSEEEEEETT--------CEEEEEETTTTEEEEEEECS-S-----CEEEEEECSSSSEEEEEET----TEEE
T ss_pred ---EECCCCCEEEEEeCC--------CeEEEEEeccCceeeeecCC-c-----eEEeeecCCCCceeeccCC----CEEE
Confidence 122246555444433 588889988765422 2222 1 1123333444444444444 4889
Q ss_pred EEEeccCCCCCCeEEEEEecC---------CCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 290 LWVMKEYGLTESWTKLYTIEK---------PQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 290 iW~l~~~~~~~~W~~~~~i~~---------~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
+|.++.. .....+.. .......+++..+|..++. ...++ .+.+||++|++
T Consensus 281 iwd~~~~------~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s--gs~Dg-~v~iW~~~tGt 339 (340)
T 4aow_A 281 IWDLEGK------IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA--GYTDN-LVRVWQVTIGT 339 (340)
T ss_dssp EEETTTT------EEEEEECCC-------CCCCCEEEEEECTTSSEEEE--EETTS-CEEEEEEEC--
T ss_pred EEECCCC------eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE--EeCCC-EEEEEeCCCcC
Confidence 9977642 11111111 0103445667778877777 43455 49999999875
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=92.68 E-value=5.8 Score=36.15 Aligned_cols=183 Identities=12% Similarity=0.049 Sum_probs=96.9
Q ss_pred CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCc
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSH 210 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~ 210 (383)
.++.+.+||..+++...+-..........+.+.+. + .+ ++.......+.+|+..++.-...-....... .
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~---~-~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~ 180 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHD---G-SF-LSVGLGNGLVDIYDVESQTKLRTMAGHQARV-----G 180 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT---S-SE-EEEEETTSCEEEEETTTCCEEEEECCCSSCE-----E
T ss_pred CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC---C-CE-EEEECCCCeEEEEECcCCeEEEEecCCCCce-----E
Confidence 47789999999988766544432222355666654 2 23 3333336689999998765322210111111 1
Q ss_pred ccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CCeEEEEEecCCCCccEEE
Q 016751 211 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYE 289 (383)
Q Consensus 211 ~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~ 289 (383)
++..+|.....+... ..|..+|+.+..-....+. .... ....+... +|.+.+++..+ ..+.
T Consensus 181 ---~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~-~~~~--~v~~~~~~~~~~~l~s~~~d----~~v~ 242 (401)
T 4aez_A 181 ---CLSWNRHVLSSGSRS--------GAIHHHDVRIANHQIGTLQ-GHSS--EVCGLAWRSDGLQLASGGND----NVVQ 242 (401)
T ss_dssp ---EEEEETTEEEEEETT--------SEEEEEETTSSSCEEEEEE-CCSS--CEEEEEECTTSSEEEEEETT----SCEE
T ss_pred ---EEEECCCEEEEEcCC--------CCEEEEecccCcceeeEEc-CCCC--CeeEEEEcCCCCEEEEEeCC----CeEE
Confidence 455566655555443 6899999984332222221 1110 11223333 46666655555 4899
Q ss_pred EEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEee--CCceEEEEEeCCCCeEE
Q 016751 290 LWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECR--HGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 290 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~--~~~~~~~~yd~~t~~~~ 350 (383)
+|.+... .....+.........+.+..++ .+++. .. .++ .+..||+++++..
T Consensus 243 iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~--~~gs~d~-~i~i~d~~~~~~~ 297 (401)
T 4aez_A 243 IWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLAT--GGGTMDK-QIHFWNAATGARV 297 (401)
T ss_dssp EEETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEE--ECCTTTC-EEEEEETTTCCEE
T ss_pred EccCCCC------CccEEecCCcceEEEEEECCCCCCEEEE--ecCCCCC-EEEEEECCCCCEE
Confidence 9988752 1222332111124445555544 56665 31 244 5999999887643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=92.51 E-value=4.4 Score=34.33 Aligned_cols=195 Identities=13% Similarity=0.058 Sum_probs=97.7
Q ss_pred eEEEccCceEEE-eecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc
Q 016751 114 DVVGSCNGVLCF-CSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS 192 (383)
Q Consensus 114 ~~~~s~~Gll~~-~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~ 192 (383)
.+....+|-+.+ ... ....+.++|+.+++...++.... ....++.+++. +. +........+.+|+..++.
T Consensus 28 ~i~~~~~g~l~v~~~~--~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~---g~---l~v~~~~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEG--MYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGA---GT---VYVTDFNNRVVTLAAGSNN 98 (270)
T ss_dssp EEEECTTCCEEEEECS--SSCEEEEECC-----EECCCCSC-CSCCCEEECTT---CC---EEEEETTTEEEEECTTCSC
T ss_pred ceEECCCCCEEEEccC--CCCcEEEecCCCcccceEeeCCc-CCcceeEECCC---CC---EEEEcCCCEEEEEeCCCce
Confidence 344455677666 532 46788999998877665543221 11255667764 32 2222214578888887664
Q ss_pred eeeeccCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe
Q 016751 193 WKNIAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF 270 (383)
Q Consensus 193 W~~~~~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~ 270 (383)
-+... ..... ... ++.+ +|.+|+..... ..|..||..+......... ... ....++..
T Consensus 99 ~~~~~-~~~~~----~p~---~i~~~~~g~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~-~~~---~p~~i~~~ 158 (270)
T 1rwi_B 99 QTVLP-FDGLN----YPE---GLAVDTQGAVYVADRGN--------NRVVKLAAGSKTQTVLPFT-GLN---DPDGVAVD 158 (270)
T ss_dssp CEECC-CCSCS----SEE---EEEECTTCCEEEEEGGG--------TEEEEECTTCCSCEECCCC-SCC---SCCCEEEC
T ss_pred Eeeee-cCCcC----CCc---ceEECCCCCEEEEECCC--------CEEEEEECCCceeEeeccc-cCC---CceeEEEe
Confidence 44332 11100 001 3333 68888765543 4789998776544332211 111 11234444
Q ss_pred -CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 271 -DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 271 -~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
+|+|++..... ..+.+|..+.. . .. ......+ ...-+++..+|.+|+. ...++ .+..||++++.
T Consensus 159 ~~g~l~v~~~~~----~~i~~~~~~~~---~--~~--~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~-~v~~~~~~~~~ 224 (270)
T 1rwi_B 159 NSGNVYVTDTDN----NRVVKLEAESN---N--QV--VLPFTDITAPWGIAVDEAGTVYVT--EHNTN-QVVKLLAGSTT 224 (270)
T ss_dssp TTCCEEEEEGGG----TEEEEECTTTC---C--EE--ECCCSSCCSEEEEEECTTCCEEEE--ETTTS-CEEEECTTCSC
T ss_pred CCCCEEEEECCC----CEEEEEecCCC---c--eE--eecccCCCCceEEEECCCCCEEEE--ECCCC-cEEEEcCCCCc
Confidence 57888776544 35555544321 1 11 1111111 2334556667788887 52234 49999998876
Q ss_pred EEE
Q 016751 349 FKC 351 (383)
Q Consensus 349 ~~~ 351 (383)
...
T Consensus 225 ~~~ 227 (270)
T 1rwi_B 225 STV 227 (270)
T ss_dssp CEE
T ss_pred cee
Confidence 544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=3.6 Score=35.84 Aligned_cols=110 Identities=11% Similarity=0.078 Sum_probs=67.3
Q ss_pred ceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCC
Q 016751 219 GSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYG 297 (383)
Q Consensus 219 G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~ 297 (383)
|.||...+.. ....|..+|+.+.+- ..+++| ... ....++..+++|++....++ .+++++-
T Consensus 32 g~Lyvstg~~------~~s~v~~iD~~tg~v~~~i~l~-~~~---fgeGi~~~g~~lyv~t~~~~------~v~viD~-- 93 (266)
T 2iwa_A 32 DTLFESTGLY------GRSSVRQVALQTGKVENIHKMD-DSY---FGEGLTLLNEKLYQVVWLKN------IGFIYDR-- 93 (266)
T ss_dssp TEEEEEECST------TTCEEEEEETTTCCEEEEEECC-TTC---CEEEEEEETTEEEEEETTCS------EEEEEET--
T ss_pred CeEEEECCCC------CCCEEEEEECCCCCEEEEEecC-CCc---ceEEEEEeCCEEEEEEecCC------EEEEEEC--
Confidence 7888866531 235899999998766 445666 422 22345666789999876543 3555553
Q ss_pred CCCCeEEEEEecCC-CceeEEEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeE-EEEEEe
Q 016751 298 LTESWTKLYTIEKP-QRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTF-KCIGVH 355 (383)
Q Consensus 298 ~~~~W~~~~~i~~~-~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~~yd~~t~~~-~~v~~~ 355 (383)
..-..+.+++.. . ...++..+| .+|+. . ... .+...|++|.+. +.+...
T Consensus 94 --~t~~v~~~i~~g~~---~g~glt~Dg~~l~vs--~-gs~-~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 94 --RTLSNIKNFTHQMK---DGWGLATDGKILYGS--D-GTS-ILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp --TTTEEEEEEECCSS---SCCEEEECSSSEEEE--C-SSS-EEEEECTTTCCEEEEEECE
T ss_pred --CCCcEEEEEECCCC---CeEEEEECCCEEEEE--C-CCC-eEEEEECCCCcEEEEEEEC
Confidence 224666677654 2 123444444 67765 3 333 699999999764 455543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=92.36 E-value=5.1 Score=36.09 Aligned_cols=195 Identities=11% Similarity=0.010 Sum_probs=90.4
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCC---CCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCce
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSL---NPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSW 193 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~---~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W 193 (383)
-+.+|.++... .++.+.|||..+++......... ......+.+.|. +. .++.......+.+|+.++++-
T Consensus 102 ~s~d~~~l~~s---~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~-~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 102 WVSEKGILVAS---DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD----GT-QAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp EETTTEEEEEE---TTSCEEEC--------CCCCEEECCCSSCEEEEEECSS----SS-EEEEEETTSCEEEEETTTTEE
T ss_pred EcCCCCEEEEE---CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC----CC-EEEEEeCCCeEEEEECCCCcE
Confidence 34556665554 56789999998877554433211 111255566553 22 233333366789999888753
Q ss_pred eeeccCCCceeeeccCcccceeE--ECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEE
Q 016751 194 KNIAYGFPRSIEINRSHINSSVF--LNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNV 269 (383)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~~~~v~--~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~ 269 (383)
...-........ ++. -+|. +...+... ..|..+|+.+.+-... ... ... .....+.-
T Consensus 174 ~~~~~~h~~~v~--------~v~~s~~~~~~~~s~~~d--------g~v~~wd~~~~~~~~~~~~~-~~~--~~v~~v~~ 234 (357)
T 4g56_B 174 LKSYNAHSSEVN--------CVAACPGKDTIFLSCGED--------GRILLWDTRKPKPATRIDFC-ASD--TIPTSVTW 234 (357)
T ss_dssp EEEECCCSSCEE--------EEEECTTCSSCEEEEETT--------SCEEECCTTSSSCBCBCCCT-TCC--SCEEEEEE
T ss_pred EEEEcCCCCCEE--------EEEEccCCCceeeeeccC--------CceEEEECCCCceeeeeeec-ccc--ccccchhh
Confidence 322101111110 222 2332 22223322 4688889877543221 221 111 11122333
Q ss_pred e--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEeeCCceEEEEEeCCC
Q 016751 270 F--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHS 346 (383)
Q Consensus 270 ~--~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~~yd~~t 346 (383)
. ++.+.+.+..+ ..+.+|-+.... ....+.........+++..++ .++.. ...++ .+.+||.++
T Consensus 235 sp~~~~~la~g~~d----~~i~~wd~~~~~------~~~~~~~~~~~v~~l~~sp~~~~~las--gs~D~-~i~iwd~~~ 301 (357)
T 4g56_B 235 HPEKDDTFACGDET----GNVSLVNIKNPD------SAQTSAVHSQNITGLAYSYHSSPFLAS--ISEDC-TVAVLDADF 301 (357)
T ss_dssp CTTSTTEEEEEESS----SCEEEEESSCGG------GCEEECCCSSCEEEEEECSSSSCCEEE--EETTS-CEEEECTTS
T ss_pred hhcccceEEEeecc----cceeEEECCCCc------EeEEEeccceeEEEEEEcCCCCCEEEE--EeCCC-EEEEEECCC
Confidence 2 35565555544 489999886421 112232221124455665555 45554 32455 499999999
Q ss_pred CeEEE
Q 016751 347 DTFKC 351 (383)
Q Consensus 347 ~~~~~ 351 (383)
++...
T Consensus 302 ~~~~~ 306 (357)
T 4g56_B 302 SEVFR 306 (357)
T ss_dssp CEEEE
T ss_pred CcEeE
Confidence 87654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=92.03 E-value=5.7 Score=34.57 Aligned_cols=199 Identities=10% Similarity=0.057 Sum_probs=101.6
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCcccee----ecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCC
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYM----TLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRS 190 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~----~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t 190 (383)
+.-+.+|-++... .++.+.+||..+++.. .++..........+.+.+. + . .++.......+.+|+.++
T Consensus 57 ~~~~~~~~~l~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~-~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 57 VTISNPTRHVYTG---GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD---G-C-TLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp EEECSSSSEEEEE---CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT---S-S-EEEEEESSSEEEEEECCC
T ss_pred EEEecCCcEEEEc---CCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC---C-C-EEEEEcCCCcEEEEECCC
Confidence 3445566655555 3678889988775422 1111111112255666654 2 2 333333367899999998
Q ss_pred CceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEE
Q 016751 191 NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNV 269 (383)
Q Consensus 191 ~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~ 269 (383)
+..+... ...........- ...-+|.....+... ..|..+|+.+.+.... ... .. ....+..
T Consensus 129 ~~~~~~~-~~~~~~~~i~~~---~~~~~~~~l~~~~~d--------g~v~~~d~~~~~~~~~~~~~-~~----~i~~~~~ 191 (337)
T 1gxr_A 129 PTPRIKA-ELTSSAPACYAL---AISPDSKVCFSCCSD--------GNIAVWDLHNQTLVRQFQGH-TD----GASCIDI 191 (337)
T ss_dssp C--EEEE-EEECSSSCEEEE---EECTTSSEEEEEETT--------SCEEEEETTTTEEEEEECCC-SS----CEEEEEE
T ss_pred CCcceee-ecccCCCceEEE---EECCCCCEEEEEeCC--------CcEEEEeCCCCceeeeeecc-cC----ceEEEEE
Confidence 8754333 111000000000 112255555544433 4789999987754332 222 11 1223333
Q ss_pred e-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 270 F-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 270 ~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
. +|...++...+ ..+.+|.++.. .....+.... ....+.+..+|..++. ...++ .+..||+++++
T Consensus 192 ~~~~~~l~~~~~d----g~i~~~d~~~~------~~~~~~~~~~-~v~~~~~s~~~~~l~~--~~~~~-~i~~~~~~~~~ 257 (337)
T 1gxr_A 192 SNDGTKLWTGGLD----NTVRSWDLREG------RQLQQHDFTS-QIFSLGYCPTGEWLAV--GMESS-NVEVLHVNKPD 257 (337)
T ss_dssp CTTSSEEEEEETT----SEEEEEETTTT------EEEEEEECSS-CEEEEEECTTSSEEEE--EETTS-CEEEEETTSSC
T ss_pred CCCCCEEEEEecC----CcEEEEECCCC------ceEeeecCCC-ceEEEEECCCCCEEEE--EcCCC-cEEEEECCCCC
Confidence 3 45555555544 48999988652 2333333332 2444566667766666 42455 49999999887
Q ss_pred EEEE
Q 016751 349 FKCI 352 (383)
Q Consensus 349 ~~~v 352 (383)
...+
T Consensus 258 ~~~~ 261 (337)
T 1gxr_A 258 KYQL 261 (337)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6544
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=91.93 E-value=6.3 Score=34.88 Aligned_cols=168 Identities=11% Similarity=0.129 Sum_probs=87.2
Q ss_pred eeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcC-CCceeeecc-CCCceeeeccCcccceeEECce-EEEEEeeccCCCC
Q 016751 158 LGFGVNSVSGHLDDFKVVTISV-NADAEVYSLR-SNSWKNIAY-GFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDN 233 (383)
Q Consensus 158 ~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~-t~~W~~~~~-~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~ 233 (383)
..+.++|. +. ++.... ...+.+|+.. +++...... ..+..... ..- .+.-+|. +|......
T Consensus 144 ~~~~~spd---g~---l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p-~~~---~~spdg~~l~v~~~~~----- 208 (347)
T 3hfq_A 144 HYTDLTPD---NR---LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP-RHL---VFSPDGQYAFLAGELS----- 208 (347)
T ss_dssp EEEEECTT---SC---EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE-EEE---EECTTSSEEEEEETTT-----
T ss_pred eEEEECCC---Cc---EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC-ceE---EECCCCCEEEEEeCCC-----
Confidence 45677765 43 333332 5679999998 566554330 11111000 000 2334676 56544332
Q ss_pred CCCcEEEEEECC--CCeeeEe----CCCCCCCCC-CCceEEEEe-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEE
Q 016751 234 SCPWLIVSFDFA--KEIFQTV----MMPYDLSTD-DADKYLNVF-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTK 304 (383)
Q Consensus 234 ~~~~~il~fD~~--~~~~~~i----~lP~~~~~~-~~~~~l~~~-~g~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~ 304 (383)
..+..||+. +.++..+ ..| ..... .....++.. +|+ |++..... ..+.+|.++.. ..+..
T Consensus 209 ---~~v~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~i~~spdG~~l~v~~~~~----~~v~v~~~~~~---g~~~~ 277 (347)
T 3hfq_A 209 ---SQIASLKYDTQTGAFTQLGIVKTIP-ADYTAHNGAAAIRLSHDGHFLYVSNRGY----NTLAVFAVTAD---GHLTL 277 (347)
T ss_dssp ---TEEEEEEEETTTTEEEEEEEEESSC-TTCCSCCEEEEEEECTTSCEEEEEEETT----TEEEEEEECGG---GCEEE
T ss_pred ---CEEEEEEecCCCCceEEeeeeeecC-CCCCCCCcceeEEECCCCCEEEEEeCCC----CEEEEEEECCC---CcEEE
Confidence 456666655 5665443 334 22111 112234433 465 55555444 58999999752 34666
Q ss_pred EEEecCCCceeEEEEEeeCCc-EEEEEEeeCCceEEEEE--eCCCCeEEEEEE
Q 016751 305 LYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVY--NPHSDTFKCIGV 354 (383)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~~~~y--d~~t~~~~~v~~ 354 (383)
+..++........+++..+|+ |++. ...++ .+.+| |.++++++.+.-
T Consensus 278 ~~~~~~~~~~~~~~~~spdg~~l~v~--~~~~~-~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 278 IQQISTEGDFPRDFDLDPTEAFVVVV--NQNTD-NATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp EEEEECSSSCCCEEEECTTSSEEEEE--ETTTT-EEEEEEECTTTCCEEEEEE
T ss_pred eEEEecCCCCcCeEEECCCCCEEEEE--EcCCC-cEEEEEEeCCCCeEEeccc
Confidence 666665221234466777786 5555 31234 35666 889999988753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=91.62 E-value=5.9 Score=33.92 Aligned_cols=196 Identities=11% Similarity=0.100 Sum_probs=104.3
Q ss_pred eEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCc
Q 016751 114 DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNS 192 (383)
Q Consensus 114 ~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~ 192 (383)
.+....+|-+.+... ....+.++||. ++...++.+.......++..|+. . . +..... ...+.+|+.. +.
T Consensus 24 ~i~~d~~g~l~v~~~--~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~---g-~--l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 24 GITSSEDGKVWFTQH--KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL---G-D--IWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp EEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT---S-C--EEEEETTTTEEEEECTT-SC
T ss_pred eeeECCCCCEEEEcC--CCCeEEEECCC-CceEEEECCCCCCcceeEEECCC---C-C--EEEEecCCCeEEEECCC-CC
Confidence 345556777766653 46789999998 66665443222122255666653 2 2 222222 4568888887 76
Q ss_pred eeeeccCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe
Q 016751 193 WKNIAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF 270 (383)
Q Consensus 193 W~~~~~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~ 270 (383)
++... .+.... ... ++.+ +|.+|+..... ..|..||.. .+...+.+| .... ....++..
T Consensus 94 ~~~~~--~~~~~~--~~~---~i~~~~~g~l~v~~~~~--------~~i~~~~~~-g~~~~~~~~-~~~~--~~~~i~~d 154 (300)
T 2qc5_A 94 FTEYP--LPQPDS--GPY---GITEGLNGDIWFTQLNG--------DRIGKLTAD-GTIYEYDLP-NKGS--YPAFITLG 154 (300)
T ss_dssp EEEEE--CSSTTC--CEE---EEEECSTTCEEEEETTT--------TEEEEECTT-SCEEEEECS-STTC--CEEEEEEC
T ss_pred eEEec--CCCCCC--CCc---cceECCCCCEEEEccCC--------CeEEEECCC-CCEEEccCC-CCCC--CceeEEEC
Confidence 66544 111100 011 3333 58887755433 489999998 666655555 3221 22334443
Q ss_pred -CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 271 -DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 271 -~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
+|+|++...... . |++++.. .+... ..++.......-+.+..+|.+++. ..... .+..||+ ++++
T Consensus 155 ~~g~l~v~~~~~~----~--i~~~~~~---g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~-~i~~~~~-~g~~ 220 (300)
T 2qc5_A 155 SDNALWFTENQNN----S--IGRITNT---GKLEE-YPLPTNAAAPVGITSGNDGALWFV--EIMGN-KIGRITT-TGEI 220 (300)
T ss_dssp TTSSEEEEETTTT----E--EEEECTT---CCEEE-EECSSTTCCEEEEEECTTSSEEEE--ETTTT-EEEEECT-TCCE
T ss_pred CCCCEEEEecCCC----e--EEEECCC---CcEEE-eeCCCCCCCcceEEECCCCCEEEE--ccCCC-EEEEEcC-CCcE
Confidence 478877664332 3 4444431 23333 222221112333455567788887 52233 4999999 5666
Q ss_pred EEE
Q 016751 350 KCI 352 (383)
Q Consensus 350 ~~v 352 (383)
..+
T Consensus 221 ~~~ 223 (300)
T 2qc5_A 221 SEY 223 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=91.33 E-value=6.7 Score=34.00 Aligned_cols=191 Identities=12% Similarity=0.065 Sum_probs=95.1
Q ss_pred cCceEEEeecCCCCceEEEEccCccceee-cCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC--ceee
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN--SWKN 195 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~--~W~~ 195 (383)
..|-+++... ....++++|+.|++.+. ++.... .......+.+. . + ++. .....+..|+. ++ -|+.
T Consensus 3 ~~~~~lv~~~--~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pd---G-~--ilv-s~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 3 SPQHLLVGGS--GWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKA---G-E--ILF-SYSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCCEEEEECT--TCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTT---S-C--EEE-ECBSEEEEECT-TSCEEEEE
T ss_pred CCCcEEEeeC--CCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCC---C-C--EEE-eCCCCEEEECC-CCCEEEEE
Confidence 3344444442 67788999998877443 443221 01122334443 2 2 222 23567888888 44 5765
Q ss_pred eccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCC--CceEEE-EeCC
Q 016751 196 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDD--ADKYLN-VFDG 272 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~--~~~~l~-~~~g 272 (383)
-. ....... . . .+..+|.++...... ...++.||...+....+.+. ...... ....+. ..+|
T Consensus 72 ~~-~~~~~~~--~-~---~~~~dG~~lv~~~~~-------~~~v~~vd~~Gk~l~~~~~~-~~~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 72 AA-PAGCEMQ--T-A---RILPDGNALVAWCGH-------PSTILEVNMKGEVLSKTEFE-TGIERPHAQFRQINKNKKG 136 (276)
T ss_dssp EC-CTTCEEE--E-E---EECTTSCEEEEEEST-------TEEEEEECTTSCEEEEEEEC-CSCSSGGGSCSCCEECTTS
T ss_pred cC-CCCcccc--c-c---EECCCCCEEEEecCC-------CCEEEEEeCCCCEEEEEecc-CCCCcccccccCceECCCC
Confidence 43 2111111 1 1 455678777765431 24789999865543334332 211000 011112 2346
Q ss_pred eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 273 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 273 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
.+.++.... ..+..|-.+ + +..|+... +... .. .....+|++++. ...++ +++.+|++|++..
T Consensus 137 ~~lv~~~~~----~~v~~~d~~--G-~~~w~~~~--~~~~--~~-~~~~~~g~~~v~--~~~~~-~v~~~d~~tG~~~ 199 (276)
T 3no2_A 137 NYLVPLFAT----SEVREIAPN--G-QLLNSVKL--SGTP--FS-SAFLDNGDCLVA--CGDAH-CFVQLNLESNRIV 199 (276)
T ss_dssp CEEEEETTT----TEEEEECTT--S-CEEEEEEC--SSCC--CE-EEECTTSCEEEE--CBTTS-EEEEECTTTCCEE
T ss_pred CEEEEecCC----CEEEEECCC--C-CEEEEEEC--CCCc--cc-eeEcCCCCEEEE--eCCCC-eEEEEeCcCCcEE
Confidence 665554433 355555443 2 34565432 2111 11 333457788887 52444 4999999987754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=90.70 E-value=8.1 Score=33.80 Aligned_cols=200 Identities=12% Similarity=-0.037 Sum_probs=99.3
Q ss_pred EccCce-EEEeecCCCCceEEEEcc-CccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc--
Q 016751 117 GSCNGV-LCFCSNGSDRSLIYLWNP-LIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS-- 192 (383)
Q Consensus 117 ~s~~Gl-l~~~~~~~~~~~~~v~NP-~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~-- 192 (383)
-+.+|- .++... .++.+.+||. .+++...+...........+.+.+ .-.++.......+.+|+.++..
T Consensus 64 ~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~------~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 64 FIDNTDLQIYVGT--VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG------DDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp EEESSSEEEEEEE--TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET------TTEEEEEETTSEEEEECHHHHTTB
T ss_pred ECCCCCcEEEEEc--CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC------CCEEEEEcCCCeEEEEcccccccc
Confidence 344555 444332 5788999999 888876665421222224444443 1233333335678888876400
Q ss_pred -----eeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCC-Ce--eeEeCCCCCCCCCCCc
Q 016751 193 -----WKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK-EI--FQTVMMPYDLSTDDAD 264 (383)
Q Consensus 193 -----W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~-~~--~~~i~lP~~~~~~~~~ 264 (383)
.+.+. ....... -. ++.+.+.-...+... ..|..||+.+ .. ......+ ... ..
T Consensus 136 ~~~~~~~~~~-~~~~~~~---v~---~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~-~~~---~i 196 (342)
T 1yfq_A 136 VIAVKNLNSN-NTKVKNK---IF---TMDTNSSRLIVGMNN--------SQVQWFRLPLCEDDNGTIEESG-LKY---QI 196 (342)
T ss_dssp CEEEEESCSS-SSSSCCC---EE---EEEECSSEEEEEEST--------TEEEEEESSCCTTCCCEEEECS-CSS---CE
T ss_pred cccccCCeee-EEeeCCc---eE---EEEecCCcEEEEeCC--------CeEEEEECCccccccceeeecC-CCC---ce
Confidence 22222 2221100 01 333333322233222 4899999987 32 3333322 111 12
Q ss_pred eEEEEe--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC---------ceeEEEEEeeCCcEEEEEEee
Q 016751 265 KYLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ---------RIWWPLGFTERGKIFIRGECR 333 (383)
Q Consensus 265 ~~l~~~--~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~---------~~~~~~~~~~~g~i~~~~~~~ 333 (383)
..+... +|.+.++...+ ..+.+|.++..+.+........+.... .....+.+..+|..++. ..
T Consensus 197 ~~i~~~~~~~~~l~~~~~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~ 270 (342)
T 1yfq_A 197 RDVALLPKEQEGYACSSID----GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT--AG 270 (342)
T ss_dssp EEEEECSGGGCEEEEEETT----SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE--EE
T ss_pred eEEEECCCCCCEEEEEecC----CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE--ec
Confidence 334444 46666666555 499999997641111111122222110 02445566667766665 42
Q ss_pred CCceEEEEEeCCCCeEE
Q 016751 334 HGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 334 ~~~~~~~~yd~~t~~~~ 350 (383)
.++ .+.+||+++++..
T Consensus 271 ~dg-~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 271 SDG-IISCWNLQTRKKI 286 (342)
T ss_dssp TTS-CEEEEETTTTEEE
T ss_pred CCc-eEEEEcCccHhHh
Confidence 455 4999999988753
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.63 E-value=8.8 Score=34.14 Aligned_cols=195 Identities=12% Similarity=0.180 Sum_probs=97.9
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccceeecCCC-C-CCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRP-S-LNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS 192 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~-~-~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~ 192 (383)
+.-+-+|-++.... .++.+.|||..++++...... . .......+.+.|. + . .++.......+.+++..++.
T Consensus 22 l~~sp~g~~las~~--~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g-~-~l~s~s~D~~v~iw~~~~~~ 94 (345)
T 3fm0_A 22 LAWNPAGTLLASCG--GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC---G-N-YLASASFDATTCIWKKNQDD 94 (345)
T ss_dssp EEECTTSSCEEEEE--TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT---S-S-EEEEEETTSCEEEEEECCC-
T ss_pred EEECCCCCEEEEEc--CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC---C-C-EEEEEECCCcEEEEEccCCC
Confidence 33455565555443 577888998877765422111 1 1112255666654 2 2 23333335678899888877
Q ss_pred eeeeccCCCceeeeccCcccceeE--ECceEEEEEeeccCCCCCCCcEEEEEECCCCe-eeEe-CCCCCCCCCCCceEEE
Q 016751 193 WKNIAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI-FQTV-MMPYDLSTDDADKYLN 268 (383)
Q Consensus 193 W~~~~~~~p~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~-~~~i-~lP~~~~~~~~~~~l~ 268 (383)
++.+. .+........ ++. -+|.+...+..+ ..|..+|+.++. ...+ .+. .... ....+.
T Consensus 95 ~~~~~-~~~~h~~~v~-----~v~~sp~~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~-~h~~--~v~~~~ 157 (345)
T 3fm0_A 95 FECVT-TLEGHENEVK-----SVAWAPSGNLLATCSRD--------KSVWVWEVDEEDEYECVSVLN-SHTQ--DVKHVV 157 (345)
T ss_dssp EEEEE-EECCCSSCEE-----EEEECTTSSEEEEEETT--------SCEEEEEECTTSCEEEEEEEC-CCCS--CEEEEE
T ss_pred eEEEE-EccCCCCCce-----EEEEeCCCCEEEEEECC--------CeEEEEECCCCCCeEEEEEec-CcCC--CeEEEE
Confidence 65443 2211000000 222 245554444433 478888887542 3222 122 1111 112233
Q ss_pred Ee-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeC
Q 016751 269 VF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNP 344 (383)
Q Consensus 269 ~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~ 344 (383)
-. +|.+.+....+ ..+.+|.++. ..|.....+.-.......+.+..+|..++. ...++. +..+|.
T Consensus 158 ~~p~~~~l~s~s~d----~~i~~w~~~~----~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s--~s~D~~-v~iW~~ 223 (345)
T 3fm0_A 158 WHPSQELLASASYD----DTVKLYREEE----DDWVCCATLEGHESTVWSLAFDPSGQRLAS--CSDDRT-VRIWRQ 223 (345)
T ss_dssp ECSSSSCEEEEETT----SCEEEEEEET----TEEEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSC-EEEEEE
T ss_pred ECCCCCEEEEEeCC----CcEEEEEecC----CCEEEEEEecCCCCceEEEEECCCCCEEEE--EeCCCe-EEEecc
Confidence 22 35555555544 4899998875 447666666433223555666677776666 424443 777764
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=90.15 E-value=7.7 Score=32.72 Aligned_cols=190 Identities=12% Similarity=0.014 Sum_probs=100.8
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCce
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNSW 193 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~W 193 (383)
+....+|.+.+.. ....++++|+.++....++.... ....++.+++. +. +..... ...+.+|+.++...
T Consensus 72 i~~~~~g~l~v~~---~~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~---g~---l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 72 LAVDGAGTVYVTD---FNNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQ---GA---VYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp EEECTTCCEEEEE---TTTEEEEECTTCSCCEECCCCSC-SSEEEEEECTT---CC---EEEEEGGGTEEEEECTTCCSC
T ss_pred eEECCCCCEEEEc---CCCEEEEEeCCCceEeeeecCCc-CCCcceEECCC---CC---EEEEECCCCEEEEEECCCcee
Confidence 4444567776665 35689999998877665543221 12256777764 32 333222 45778886665544
Q ss_pred eeeccCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-
Q 016751 194 KNIAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF- 270 (383)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~- 270 (383)
.... .... . ... ++.+ +|.+|+..... ..|..||..+......... . . .....++..
T Consensus 142 ~~~~-~~~~--~--~p~---~i~~~~~g~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~-~-~--~~p~~i~~d~ 201 (270)
T 1rwi_B 142 TVLP-FTGL--N--DPD---GVAVDNSGNVYVTDTDN--------NRVVKLEAESNNQVVLPFT-D-I--TAPWGIAVDE 201 (270)
T ss_dssp EECC-CCSC--C--SCC---CEEECTTCCEEEEEGGG--------TEEEEECTTTCCEEECCCS-S-C--CSEEEEEECT
T ss_pred Eeec-cccC--C--Cce---eEEEeCCCCEEEEECCC--------CEEEEEecCCCceEeeccc-C-C--CCceEEEECC
Confidence 3222 1110 0 111 3333 58888766543 4899999987665443222 1 1 122345554
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
+|.|++...... .+.+|..+. ..... +....+ ....+++..+|.+|+. ...++ .+..|++..++
T Consensus 202 ~g~l~v~~~~~~----~v~~~~~~~---~~~~~----~~~~~~~~p~~i~~~~~g~l~v~--~~~~~-~v~~~~~~~~~ 266 (270)
T 1rwi_B 202 AGTVYVTEHNTN----QVVKLLAGS---TTSTV----LPFTGLNTPLAVAVDSDRTVYVA--DRGND-RVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEETTTS----CEEEECTTC---SCCEE----CCCCSCSCEEEEEECTTCCEEEE--EGGGT-EEEEECCCGGG
T ss_pred CCCEEEEECCCC----cEEEEcCCC---Cccee----eccCCCCCceeEEECCCCCEEEE--ECCCC-EEEEEcCCCcc
Confidence 468887765443 555554332 11111 221111 2344555667888887 52334 58999887654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=89.54 E-value=9.7 Score=32.95 Aligned_cols=140 Identities=11% Similarity=0.042 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCC
Q 016751 181 ADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLS 259 (383)
Q Consensus 181 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~ 259 (383)
..+.+++.++++=...- .++.. .+... -...++.+|.+.... ..+.+||..+.+- ..++.| ..
T Consensus 65 S~v~~vD~~Tgkv~~~~-~l~~~-~FgeG----it~~g~~ly~ltw~~--------~~v~v~D~~t~~~~~ti~~~-~e- 128 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQI-ELGKR-YFGEG----ISDWKDKIVGLTWKN--------GLGFVWNIRNLRQVRSFNYD-GE- 128 (262)
T ss_dssp EEEEEECTTTCCEEEEE-ECCTT-CCEEE----EEEETTEEEEEESSS--------SEEEEEETTTCCEEEEEECS-SC-
T ss_pred ceEEEEECCCCcEEEEE-ecCCc-cceeE----EEEeCCEEEEEEeeC--------CEEEEEECccCcEEEEEECC-CC-
Confidence 47888888887432211 22221 11121 245677999887765 6899999987554 455665 31
Q ss_pred CCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC--c---eeEEEEEeeCCcEEEEEEeeC
Q 016751 260 TDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ--R---IWWPLGFTERGKIFIRGECRH 334 (383)
Q Consensus 260 ~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--~---~~~~~~~~~~g~i~~~~~~~~ 334 (383)
...++.-+++|++..+ .. .||+++-. . -..+.+|.... . ...-+.. .+|.||.. . .
T Consensus 129 ----G~glt~dg~~L~~SdG-s~------~i~~iDp~--T--~~v~~~I~V~~~g~~~~~lNELe~-~~G~lyan--~-w 189 (262)
T 3nol_A 129 ----GWGLTHNDQYLIMSDG-TP------VLRFLDPE--S--LTPVRTITVTAHGEELPELNELEW-VDGEIFAN--V-W 189 (262)
T ss_dssp ----CCCEEECSSCEEECCS-SS------EEEEECTT--T--CSEEEEEECEETTEECCCEEEEEE-ETTEEEEE--E-T
T ss_pred ----ceEEecCCCEEEEECC-CC------eEEEEcCC--C--CeEEEEEEeccCCccccccceeEE-ECCEEEEE--E-c
Confidence 2345555667777653 21 47777642 1 22334444321 0 1111333 36888877 5 4
Q ss_pred CceEEEEEeCCCCeEE-EEEEe
Q 016751 335 GGYGLLVYNPHSDTFK-CIGVH 355 (383)
Q Consensus 335 ~~~~~~~yd~~t~~~~-~v~~~ 355 (383)
....+.+.|++|++.. .++..
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECT
T ss_pred cCCeEEEEECCCCcEEEEEECC
Confidence 4446999999999975 45654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=89.49 E-value=10 Score=33.19 Aligned_cols=207 Identities=7% Similarity=0.061 Sum_probs=95.7
Q ss_pred ceEEEeecCCCCceEEEEccCccceeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC-ceeeecc
Q 016751 121 GVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN-SWKNIAY 198 (383)
Q Consensus 121 Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~-~W~~~~~ 198 (383)
|-+++... .++.+.+||..++++..+-...... ....+.+.|. ...-.++.......+.+|+.+++ .|+...
T Consensus 71 ~~~l~s~s--~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~---~~g~~lasgs~D~~i~lwd~~~~~~~~~~~- 144 (316)
T 3bg1_A 71 GNILASCS--YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPH---DYGLILACGSSDGAISLLTYTGEGQWEVKK- 144 (316)
T ss_dssp SSCEEEEE--TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCT---TTCSCEEEECSSSCEEEEEECSSSCEEECC-
T ss_pred CCEEEEEE--CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCC---CCCcEEEEEcCCCCEEEEecCCCCCcceee-
Confidence 54444442 6788999999887543322111111 1245566654 32333333333567888988775 675432
Q ss_pred CCCc---ee---eeccCcccceeE---------ECceEEEEEeeccCCCCCCCcEEEEEECCC-CeeeEe-CCCCCCCCC
Q 016751 199 GFPR---SI---EINRSHINSSVF---------LNGSVHWCARFSCYHDNSCPWLIVSFDFAK-EIFQTV-MMPYDLSTD 261 (383)
Q Consensus 199 ~~p~---~~---~~~~~~~~~~v~---------~~G~lYw~~~~~~~~~~~~~~~il~fD~~~-~~~~~i-~lP~~~~~~ 261 (383)
.... .. .+..... .+.. -+|.....+. ....|..+|+.+ +.|..+ .+. .+..
T Consensus 145 ~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sgs--------~D~~v~lWd~~~~~~~~~~~~l~-~h~~- 213 (316)
T 3bg1_A 145 INNAHTIGCNAVSWAPAVV-PGSLIDHPSGQKPNYIKRFASGG--------CDNLIKLWKEEEDGQWKEEQKLE-AHSD- 213 (316)
T ss_dssp BTTSSSSCBCCCEECCCCC-C------CCSCCCCCCCBEECCB--------TTSBCCEEEECTTSCEEEEECCB-CCSS-
T ss_pred eeccccCCcceEEEccccC-CccccccccccCccccceEEEec--------CCCeEEEEEeCCCCccceeeecc-cCCC-
Confidence 1110 00 0000000 0000 0012222111 124677788763 345444 333 2211
Q ss_pred CCceEEEEeC-C----eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc
Q 016751 262 DADKYLNVFD-G----YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG 336 (383)
Q Consensus 262 ~~~~~l~~~~-g----~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 336 (383)
....+.-.. + .+.+....+ ..+.||.++... ...|.....-.... ....+++..+|.++.. ...++
T Consensus 214 -~V~~v~~sp~~~~~~~~las~s~D----~~v~iw~~~~~~-~~~~~~~~~~~~~~-~v~~v~~sp~g~~las--~~~D~ 284 (316)
T 3bg1_A 214 -WVRDVAWAPSIGLPTSTIASCSQD----GRVFIWTCDDAS-SNTWSPKLLHKFND-VVWHVSWSITANILAV--SGGDN 284 (316)
T ss_dssp -CEEEEECCCCSSCSCCEEEEEETT----CEEEEEECSSTT-CCCCBCCEEEECSS-CEEEEEECTTTCCEEE--EESSS
T ss_pred -ceEEEEecCCCCCCCceEEEEcCC----CeEEEEEccCcc-ccchhhhhhhcCCC-cEEEEEEcCCCCEEEE--EcCCC
Confidence 111222221 2 444444444 599999987531 12343211111111 2455667777776665 43455
Q ss_pred eEEEEEeCC-CCeEEEEEE
Q 016751 337 YGLLVYNPH-SDTFKCIGV 354 (383)
Q Consensus 337 ~~~~~yd~~-t~~~~~v~~ 354 (383)
. +..+|.. .++|..+..
T Consensus 285 ~-v~lw~~~~~g~~~~~~~ 302 (316)
T 3bg1_A 285 K-VTLWKESVDGQWVCISD 302 (316)
T ss_dssp C-EEEEEECTTSCEEEEEE
T ss_pred e-EEEEEECCCCcEEEeee
Confidence 3 8888875 456777743
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=11 Score=33.35 Aligned_cols=140 Identities=12% Similarity=0.054 Sum_probs=72.2
Q ss_pred ceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCc-e-eeeccCC-Cc--eeee
Q 016751 133 SLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNS-W-KNIAYGF-PR--SIEI 206 (383)
Q Consensus 133 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~-W-~~~~~~~-p~--~~~~ 206 (383)
..++++|+.+++....-.........++.+|+. +. ++.... ...+.+|+..... . ..+.... +. ....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~---g~---l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 142 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD---GN---YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTT---SC---EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCC
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCC---CC---EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCcccc
Confidence 369999999888654322111112266777765 33 332222 5578888875541 1 2221000 00 0001
Q ss_pred ccCcccceeEE---CceEEEEEe-eccCCCCCCCcEEEEEECCCCeeeEeCCCCCCC------CCCCceEEEEe-C-CeE
Q 016751 207 NRSHINSSVFL---NGSVHWCAR-FSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS------TDDADKYLNVF-D-GYL 274 (383)
Q Consensus 207 ~~~~~~~~v~~---~G~lYw~~~-~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~------~~~~~~~l~~~-~-g~L 274 (383)
.... ++.+ +|.+|+... .. ..|..||........+..+ ... .-..-..++.. + |.|
T Consensus 143 ~~P~---~ia~~~~~g~lyv~d~~~~--------~~I~~~~~~g~~~~~~~~~-g~~~~~~~~~~~~p~gia~d~~~g~l 210 (329)
T 3fvz_A 143 CQPT---DVAVEPSTGAVFVSDGYCN--------SRIVQFSPSGKFVTQWGEE-SSGSSPRPGQFSVPHSLALVPHLDQL 210 (329)
T ss_dssp SSEE---EEEECTTTCCEEEEECSSC--------CEEEEECTTSCEEEEECEE-CCSSSCCTTEESCEEEEEEETTTTEE
T ss_pred CCCc---EEEEeCCCCeEEEEeCCCC--------CeEEEEcCCCCEEEEeccC-CCCCCCCCcccCCCcEEEEECCCCEE
Confidence 1111 4444 689999774 33 5899999766555554321 110 00012334544 3 788
Q ss_pred EEEEecCCCCccEEEEEEec
Q 016751 275 CVFATIPNNTFRSYELWVMK 294 (383)
Q Consensus 275 ~~v~~~~~~~~~~l~iW~l~ 294 (383)
+++.... ..+.+|..+
T Consensus 211 ~v~d~~~----~~I~~~~~~ 226 (329)
T 3fvz_A 211 CVADREN----GRIQCFKTD 226 (329)
T ss_dssp EEEETTT----TEEEEEETT
T ss_pred EEEECCC----CEEEEEECC
Confidence 8887655 477777765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=89.34 E-value=10 Score=32.87 Aligned_cols=200 Identities=8% Similarity=0.036 Sum_probs=94.0
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCC-ceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKN 195 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~-~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~ 195 (383)
.+.+|-.+.... .++.+.|||..++....+-....... ...+.+.+. ...-.++.......+.+++.+++.|..
T Consensus 17 ~s~~g~~las~s--~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~---~~g~~l~s~s~D~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 17 MDYYGKRMATCS--SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP---KFGTILASCSYDGKVMIWKEENGRWSQ 91 (297)
T ss_dssp ECTTSSEEEEEE--TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG---GGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred ECCCCCEEEEEe--CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC---CcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence 345565555443 56778888875432211111111111 144555432 212233333336789999999888865
Q ss_pred eccCCCceeeeccCcccceeEEC----ceEEEEEeeccCCCCCCCcEEEEEECCCCe-eeEeCCCCCCCCCCCceEEEEe
Q 016751 196 IAYGFPRSIEINRSHINSSVFLN----GSVHWCARFSCYHDNSCPWLIVSFDFAKEI-FQTVMMPYDLSTDDADKYLNVF 270 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~~----G~lYw~~~~~~~~~~~~~~~il~fD~~~~~-~~~i~lP~~~~~~~~~~~l~~~ 270 (383)
+. .......... ++.+. |.+...+..+ ..|..+|+.+.. +....+. .+.. ....+.-.
T Consensus 92 ~~-~~~~h~~~v~-----~v~~~p~~~g~~l~s~s~d--------~~v~~wd~~~~~~~~~~~~~-~h~~--~v~~~~~~ 154 (297)
T 2pm7_B 92 IA-VHAVHSASVN-----SVQWAPHEYGPMLLVASSD--------GKVSVVEFKENGTTSPIIID-AHAI--GVNSASWA 154 (297)
T ss_dssp CE-EECCCSSCEE-----EEEECCGGGCSEEEEEETT--------SEEEEEEBCSSSCBCCEEEE-CCSS--CEEEEEEC
T ss_pred EE-EeecCCCcee-----EEEeCcCCCCcEEEEEECC--------CcEEEEEecCCCceeeeeee-cccC--ccceEeec
Confidence 43 2110000000 22221 4443333332 478888887542 2111111 0000 00011111
Q ss_pred --------------CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCC---cEEEEEEee
Q 016751 271 --------------DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG---KIFIRGECR 333 (383)
Q Consensus 271 --------------~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g---~i~~~~~~~ 333 (383)
++++.+....+ ..+.+|.++.. ...|.....+.........+.+..++ ..+.. ..
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D----~~v~lwd~~~~--~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s 226 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGAD----NLVKIWKYNSD--AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VS 226 (297)
T ss_dssp CCC------------CCEEEEEETT----SCEEEEEEETT--TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EE
T ss_pred CCcccccccCCCCCCcceEEEEcCC----CcEEEEEEcCC--CceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EE
Confidence 13444444444 58999998752 24466666665332234556665553 55555 32
Q ss_pred CCceEEEEEeCCCC
Q 016751 334 HGGYGLLVYNPHSD 347 (383)
Q Consensus 334 ~~~~~~~~yd~~t~ 347 (383)
.++ .+..+|+++.
T Consensus 227 ~D~-~v~iWd~~~~ 239 (297)
T 2pm7_B 227 QDR-TCIIWTQDNE 239 (297)
T ss_dssp TTS-CEEEEEESST
T ss_pred CCC-cEEEEEeCCC
Confidence 455 4888888764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=89.11 E-value=9.8 Score=32.46 Aligned_cols=197 Identities=11% Similarity=0.077 Sum_probs=103.4
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCce
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNSW 193 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~W 193 (383)
+....+|.+.+... ....++++||. ++...++.+.......++.+++. . . +..... ...+..|+.. ++.
T Consensus 67 i~~~~~g~l~v~~~--~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~---g-~--l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 67 LIVSSLGDIWFTEN--GANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN---G-D--IWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp EEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST---T-C--EEEEETTTTEEEEECTT-SCE
T ss_pred EEECCCCCEEEEec--CCCeEEEECCC-CCeEEecCCCCCCCCccceECCC---C-C--EEEEccCCCeEEEECCC-CCE
Confidence 44456677766652 45679999998 66654433222222356666654 3 2 222222 4467778776 555
Q ss_pred eeeccCCCceeeeccCcccceeE--ECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-
Q 016751 194 KNIAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF- 270 (383)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~~~~v~--~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~- 270 (383)
+... .+.... ... ++. -+|.+|+..... ..|..||. +.++..+.+| .... ....++..
T Consensus 137 ~~~~--~~~~~~--~~~---~i~~d~~g~l~v~~~~~--------~~i~~~~~-~g~~~~~~~~-~~~~--~~~~i~~d~ 197 (300)
T 2qc5_A 137 YEYD--LPNKGS--YPA---FITLGSDNALWFTENQN--------NSIGRITN-TGKLEEYPLP-TNAA--APVGITSGN 197 (300)
T ss_dssp EEEE--CSSTTC--CEE---EEEECTTSSEEEEETTT--------TEEEEECT-TCCEEEEECS-STTC--CEEEEEECT
T ss_pred EEcc--CCCCCC--Cce---eEEECCCCCEEEEecCC--------CeEEEECC-CCcEEEeeCC-CCCC--CcceEEECC
Confidence 5433 111000 001 333 368877755433 48999999 6666666555 3321 22334444
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
+|.|++...... .+.+ ++.. ..+.. ..++........+++..+|.|++. ..... .+..||+ ++++.
T Consensus 198 ~g~l~v~~~~~~----~i~~--~~~~---g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~-~i~~~~~-~g~~~ 263 (300)
T 2qc5_A 198 DGALWFVEIMGN----KIGR--ITTT---GEISE-YDIPTPNARPHAITAGKNSEIWFT--EWGAN-QIGRITN-DNTIQ 263 (300)
T ss_dssp TSSEEEEETTTT----EEEE--ECTT---CCEEE-EECSSTTCCEEEEEECSTTCEEEE--ETTTT-EEEEECT-TSCEE
T ss_pred CCCEEEEccCCC----EEEE--EcCC---CcEEE-EECCCCCCCceEEEECCCCCEEEe--ccCCC-eEEEECC-CCcEE
Confidence 578887765432 4443 3321 23333 223321112334555667888887 52234 4999999 56666
Q ss_pred EEEE
Q 016751 351 CIGV 354 (383)
Q Consensus 351 ~v~~ 354 (383)
.+.+
T Consensus 264 ~~~~ 267 (300)
T 2qc5_A 264 EYQL 267 (300)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5544
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.41 E-value=14 Score=33.25 Aligned_cols=180 Identities=13% Similarity=0.031 Sum_probs=88.3
Q ss_pred CCceEEEEccCccceeecCCCCCCC-C-------------ceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNP-R-------------YLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~-~-------------~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
.++.+.++|..+++....-...... . ...+.+.+. . +++.......+.+|+..++.-...
T Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~g~i~~~d~~~~~~~~~ 242 (425)
T 1r5m_A 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-----D-KFVIPGPKGAIFVYQITEKTPTGK 242 (425)
T ss_dssp TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-----T-EEEEECGGGCEEEEETTCSSCSEE
T ss_pred cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-----C-EEEEEcCCCeEEEEEcCCCceeee
Confidence 4667888888776654422211111 0 122233322 1 233333366889999887632211
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEE
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLC 275 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~ 275 (383)
-.......... ...-+|.....+... ..|..||+.+.+.... ... .. ....+.-..+.+.
T Consensus 243 ~~~~~~~i~~~------~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~-~~----~i~~~~~~~~~~l 303 (425)
T 1r5m_A 243 LIGHHGPISVL------EFNDTNKLLLSASDD--------GTLRIWHGGNGNSQNCFYGH-SQ----SIVSASWVGDDKV 303 (425)
T ss_dssp ECCCSSCEEEE------EEETTTTEEEEEETT--------SCEEEECSSSBSCSEEECCC-SS----CEEEEEEETTTEE
T ss_pred eccCCCceEEE------EECCCCCEEEEEcCC--------CEEEEEECCCCccceEecCC-Cc----cEEEEEECCCCEE
Confidence 10111111100 222256544444433 4788899887644222 211 11 1233444433344
Q ss_pred EEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 276 VFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 276 ~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
++...+ ..+.+|.++. ...+..+.........+.+..+|.+++. ...++ .+.+||+++.+
T Consensus 304 ~~~~~d----~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg-~i~i~~~~~~~ 363 (425)
T 1r5m_A 304 ISCSMD----GSVRLWSLKQ------NTLLALSIVDGVPIFAGRISQDGQKYAV--AFMDG-QVNVYDLKKLN 363 (425)
T ss_dssp EEEETT----SEEEEEETTT------TEEEEEEECTTCCEEEEEECTTSSEEEE--EETTS-CEEEEECHHHH
T ss_pred EEEeCC----CcEEEEECCC------CcEeEecccCCccEEEEEEcCCCCEEEE--EECCC-eEEEEECCCCc
Confidence 444433 5899998865 2333344332212455666677777666 42455 49999998876
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=20 Score=34.50 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=102.5
Q ss_pred ccCceEEEeecCCCCceEEEEccCccceee-cCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEc--CCCcee
Q 016751 118 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSL--RSNSWK 194 (383)
Q Consensus 118 s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss--~t~~W~ 194 (383)
+-+|.+++... .+..+.++|+.|++... ++.... ..++.++|. +.|-+ .......+.+|+. .+++
T Consensus 146 ~p~~~~~vs~~--~d~~V~v~D~~t~~~~~~i~~g~~---~~~v~~spd----g~~l~-v~~~d~~V~v~D~~~~t~~-- 213 (543)
T 1nir_A 146 DLPNLFSVTLR--DAGQIALVDGDSKKIVKVIDTGYA---VHISRMSAS----GRYLL-VIGRDARIDMIDLWAKEPT-- 213 (543)
T ss_dssp CGGGEEEEEEG--GGTEEEEEETTTCCEEEEEECSTT---EEEEEECTT----SCEEE-EEETTSEEEEEETTSSSCE--
T ss_pred CCCCEEEEEEc--CCCeEEEEECCCceEEEEEecCcc---cceEEECCC----CCEEE-EECCCCeEEEEECcCCCCc--
Confidence 34677777664 56789999999987543 332111 234556654 23333 3333578999999 5543
Q ss_pred eeccCCCceeeeccCcccceeEE----Cce-EEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCC-------C
Q 016751 195 NIAYGFPRSIEINRSHINSSVFL----NGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLST-------D 261 (383)
Q Consensus 195 ~~~~~~p~~~~~~~~~~~~~v~~----~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~-------~ 261 (383)
.+. .++..... ..- .+.- +|. +|...... ..|..+|..+.+- ..+..+ .... .
T Consensus 214 ~~~-~i~~g~~p-~~v---a~sp~~~~dg~~l~v~~~~~--------~~v~v~D~~t~~~~~~i~~~-g~~~~~~~~~~~ 279 (543)
T 1nir_A 214 KVA-EIKIGIEA-RSV---ESSKFKGYEDRYTIAGAYWP--------PQFAIMDGETLEPKQIVSTR-GMTVDTQTYHPE 279 (543)
T ss_dssp EEE-EEECCSEE-EEE---EECCSTTCTTTEEEEEEEES--------SEEEEEETTTCCEEEEEECC-EECSSSCCEESC
T ss_pred EEE-EEecCCCc-ceE---EeCCCcCCCCCEEEEEEccC--------CeEEEEeccccccceeeccc-CcccCccccccC
Confidence 222 22211111 100 2222 565 44443332 5789999887654 333432 1100 0
Q ss_pred CCceEEEEeC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEE
Q 016751 262 DADKYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLL 340 (383)
Q Consensus 262 ~~~~~l~~~~-g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 340 (383)
.....+.... |..+++...+. ..+.+|-+.... . .++..++... ...-+++..+|+.+++. ...+. ++.
T Consensus 280 ~~v~~i~~s~~~~~~~vs~~~~---g~i~vvd~~~~~--~--l~~~~i~~~~-~~~~~~~spdg~~l~va-~~~~~-~v~ 349 (543)
T 1nir_A 280 PRVAAIIASHEHPEFIVNVKET---GKVLLVNYKDID--N--LTVTSIGAAP-FLHDGGWDSSHRYFMTA-ANNSN-KVA 349 (543)
T ss_dssp CCEEEEEECSSSSEEEEEETTT---TEEEEEECTTSS--S--CEEEEEECCS-SCCCEEECTTSCEEEEE-EGGGT-EEE
T ss_pred CceEEEEECCCCCEEEEEECCC---CeEEEEEecCCC--c--ceeEEeccCc-CccCceECCCCCEEEEE-ecCCC-eEE
Confidence 0112333332 55555555544 577777665421 1 2234454432 24446777788754441 31233 599
Q ss_pred EEeCCCCeEEE
Q 016751 341 VYNPHSDTFKC 351 (383)
Q Consensus 341 ~yd~~t~~~~~ 351 (383)
++|.+|+++..
T Consensus 350 v~D~~tg~l~~ 360 (543)
T 1nir_A 350 VIDSKDRRLSA 360 (543)
T ss_dssp EEETTTTEEEE
T ss_pred EEECCCCeEEE
Confidence 99999998765
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=87.83 E-value=12 Score=31.94 Aligned_cols=141 Identities=12% Similarity=0.026 Sum_probs=81.8
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDL 258 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~ 258 (383)
...+.+++..+++=...- .++... +... -...++.+|.+.... ..+.+||..+.+- ..++.| .
T Consensus 42 ~S~v~~vD~~tgkv~~~~-~l~~~~-fgeG----i~~~~~~ly~ltw~~--------~~v~v~D~~tl~~~~ti~~~-~- 105 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRA-EVPPPY-FGAG----IVAWRDRLIQLTWRN--------HEGFVYDLATLTPRARFRYP-G- 105 (243)
T ss_dssp SCEEEEEETTTCCEEEEE-ECCTTC-CEEE----EEEETTEEEEEESSS--------SEEEEEETTTTEEEEEEECS-S-
T ss_pred CceEEEEECCCCCEEEEE-eCCCCc-ceeE----EEEeCCEEEEEEeeC--------CEEEEEECCcCcEEEEEeCC-C-
Confidence 357888999887433222 233221 1121 345678999988765 6999999987654 445655 2
Q ss_pred CCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-----eeEEEEEeeCCcEEEEEEee
Q 016751 259 STDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGKIFIRGECR 333 (383)
Q Consensus 259 ~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~i~~~~~~~ 333 (383)
....|+..+++|++..+ . . .|++++-. .. ..+.+|..... ...-+- ..+|+||.. .
T Consensus 106 ----~Gwglt~dg~~L~vSdg-s----~--~l~~iDp~--t~--~~~~~I~V~~~g~~~~~lNeLe-~~~G~lyan--v- 166 (243)
T 3mbr_X 106 ----EGWALTSDDSHLYMSDG-T----A--VIRKLDPD--TL--QQVGSIKVTAGGRPLDNLNELE-WVNGELLAN--V- 166 (243)
T ss_dssp ----CCCEEEECSSCEEEECS-S----S--EEEEECTT--TC--CEEEEEECEETTEECCCEEEEE-EETTEEEEE--E-
T ss_pred ----CceEEeeCCCEEEEECC-C----C--eEEEEeCC--CC--eEEEEEEEccCCcccccceeeE-EeCCEEEEE--E-
Confidence 12456655678888764 2 2 36667642 12 23344443210 111122 237888876 5
Q ss_pred CCceEEEEEeCCCCeEE-EEEEe
Q 016751 334 HGGYGLLVYNPHSDTFK-CIGVH 355 (383)
Q Consensus 334 ~~~~~~~~yd~~t~~~~-~v~~~ 355 (383)
.....+.+.|++|++.. .+++.
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECG
T ss_pred CCCCeEEEEECCCCCEEEEEECC
Confidence 43336999999999875 55654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=87.63 E-value=16 Score=33.07 Aligned_cols=199 Identities=11% Similarity=0.041 Sum_probs=101.6
Q ss_pred CceEEEeecCCCCceEEEEccCccceeecC-----CCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCce
Q 016751 120 NGVLCFCSNGSDRSLIYLWNPLIKKYMTLP-----RPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSW 193 (383)
Q Consensus 120 ~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP-----~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W 193 (383)
+|-+++... .++.+.|||..+++...-. ...... ....+.+.+. .. ..++.......+.+|+.+++..
T Consensus 93 ~~~~l~s~s--~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~-~~l~s~~~dg~i~iwd~~~~~~ 166 (402)
T 2aq5_A 93 NDNVIASGS--EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT---AQ-NVLLSAGCDNVILVWDVGTGAA 166 (402)
T ss_dssp CTTEEEEEE--TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSS---BT-TEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEe--CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcC---CC-CEEEEEcCCCEEEEEECCCCCc
Confidence 555544442 6788999998876432100 000011 1245566654 32 2343333366899999988755
Q ss_pred eeec--cCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeC-CCCCCCCCCCceEEE
Q 016751 194 KNIA--YGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM-MPYDLSTDDADKYLN 268 (383)
Q Consensus 194 ~~~~--~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~~l~ 268 (383)
...- ........ ++.+ +|.....+..+ ..|..+|+.+.+-.... .. .... ....+.
T Consensus 167 ~~~~~~~~~~~~v~--------~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~-~~~~--~~~~~~ 227 (402)
T 2aq5_A 167 VLTLGPDVHPDTIY--------SVDWSRDGALICTSCRD--------KRVRVIEPRKGTVVAEKDRP-HEGT--RPVHAV 227 (402)
T ss_dssp EEEECTTTCCSCEE--------EEEECTTSSCEEEEETT--------SEEEEEETTTTEEEEEEECS-SCSS--SCCEEE
T ss_pred cEEEecCCCCCceE--------EEEECCCCCEEEEEecC--------CcEEEEeCCCCceeeeeccC-CCCC--cceEEE
Confidence 3221 01111111 2222 56555544433 58999999887653321 22 1111 112333
Q ss_pred Ee-CCeEEEEEe--cCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEE-EEEeeCCceEEEEEeC
Q 016751 269 VF-DGYLCVFAT--IPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFI-RGECRHGGYGLLVYNP 344 (383)
Q Consensus 269 ~~-~g~L~~v~~--~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~~~~~yd~ 344 (383)
-. +|++.+++. ... ..+.+|.+..... -.....+.... ....+.+..+|..++ . ...++ .+.+||+
T Consensus 228 ~~~~~~~l~~g~~~~~d---~~i~iwd~~~~~~---~~~~~~~~~~~-~v~~~~~s~~~~~l~~~--g~~dg-~i~i~d~ 297 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSE---RQVALWDTKHLEE---PLSLQELDTSS-GVLLPFFDPDTNIVYLC--GKGDS-SIRYFEI 297 (402)
T ss_dssp ECSTTEEEEEEECTTCC---EEEEEEETTBCSS---CSEEEECCCCS-SCEEEEEETTTTEEEEE--ETTCS-CEEEEEE
T ss_pred EcCCCcEEEEeccCCCC---ceEEEEcCccccC---CceEEeccCCC-ceeEEEEcCCCCEEEEE--EcCCC-eEEEEEe
Confidence 33 466655552 222 6899999876321 11222333322 244456666776554 4 31345 4999999
Q ss_pred CCCe--EEEEE
Q 016751 345 HSDT--FKCIG 353 (383)
Q Consensus 345 ~t~~--~~~v~ 353 (383)
++++ +..+.
T Consensus 298 ~~~~~~~~~l~ 308 (402)
T 2aq5_A 298 TSEAPFLHYLS 308 (402)
T ss_dssp CSSTTCEEEEE
T ss_pred cCCCcceEeec
Confidence 9887 55553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=12 Score=31.79 Aligned_cols=197 Identities=9% Similarity=0.009 Sum_probs=102.9
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCce
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNSW 193 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~W 193 (383)
+....+|.+.+... ....++++||. ++...++.+.......++.+++. . . +..... ...+.+|+. ++..
T Consensus 62 i~~~~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~---g-~--l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 62 LTISSDGEVWFTEN--AANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPN---G-D--IWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp EEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT---S-C--EEEEETTTTEEEEECT-TCCE
T ss_pred EEECCCCCEEEeCC--CCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCC---C-C--EEEEecCCceEEEECC-CCCE
Confidence 44456777766652 45679999986 44444332211112256666654 2 1 222221 457778887 6655
Q ss_pred eeeccCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-
Q 016751 194 KNIAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF- 270 (383)
Q Consensus 194 ~~~~~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~- 270 (383)
+.......... .. ++.. +|.+|+..... ..|..||+ +.++..+.+| .... ....++..
T Consensus 132 ~~~~~~~~~~~----~~---~i~~~~~g~l~v~~~~~--------~~i~~~~~-~g~~~~~~~~-~~~~--~~~~i~~~~ 192 (299)
T 2z2n_A 132 REYELPNKGSY----PS---FITLGSDNALWFTENQN--------NAIGRITE-SGDITEFKIP-TPAS--GPVGITKGN 192 (299)
T ss_dssp EEEECSSTTCC----EE---EEEECTTSCEEEEETTT--------TEEEEECT-TCCEEEEECS-STTC--CEEEEEECT
T ss_pred EEecCCCCCCC----Cc---eEEEcCCCCEEEEeCCC--------CEEEEEcC-CCcEEEeeCC-CCCC--cceeEEECC
Confidence 54431111110 01 3333 57887755432 48999999 7777766555 3221 22334444
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
+|+|++..... ..+.++.. . ..... ..++........+.+..+|.+++. ..... .+..||+ +++++
T Consensus 193 ~g~l~v~~~~~----~~i~~~~~-~----g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~-~i~~~d~-~g~~~ 258 (299)
T 2z2n_A 193 DDALWFVEIIG----NKIGRITT-S----GEITE-FKIPTPNARPHAITAGAGIDLWFT--EWGAN-KIGRLTS-NNIIE 258 (299)
T ss_dssp TSSEEEEETTT----TEEEEECT-T----CCEEE-EECSSTTCCEEEEEECSTTCEEEE--ETTTT-EEEEEET-TTEEE
T ss_pred CCCEEEEccCC----ceEEEECC-C----CcEEE-EECCCCCCCceeEEECCCCCEEEe--ccCCc-eEEEECC-CCceE
Confidence 47887776433 24544433 1 22332 223321112344555667888887 52234 4999999 56666
Q ss_pred EEEE
Q 016751 351 CIGV 354 (383)
Q Consensus 351 ~v~~ 354 (383)
.+..
T Consensus 259 ~~~~ 262 (299)
T 2z2n_A 259 EYPI 262 (299)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.56 E-value=15 Score=32.78 Aligned_cols=198 Identities=9% Similarity=0.019 Sum_probs=94.2
Q ss_pred CceEEEeecCCCCceEEEEccCccceeecCCC-----------CCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEE
Q 016751 120 NGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRP-----------SLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYS 187 (383)
Q Consensus 120 ~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~-----------~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vys 187 (383)
+|-+++... .++.+.|||..+++....... .... ....+.+.+. ...+ ++.......+.+|+
T Consensus 55 ~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~-l~s~~~d~~i~iwd 128 (408)
T 4a11_B 55 EGRYMLSGG--SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH---DTGM-FTSSSFDKTLKVWD 128 (408)
T ss_dssp TCCEEEEEE--TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT---CTTC-EEEEETTSEEEEEE
T ss_pred CCCEEEEEc--CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC---CCcE-EEEEeCCCeEEEee
Confidence 444444332 566788888776543322110 0011 1255666664 3333 33333366899999
Q ss_pred cCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeE-eCCCCCCCCCCCceE
Q 016751 188 LRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKY 266 (383)
Q Consensus 188 s~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~~~~~~~~~ 266 (383)
..++.-...- ..+......... +..-+|.+...+... ..|..||+.+..... +... . . ....
T Consensus 129 ~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~v~~~d~~~~~~~~~~~~~-~-~---~v~~ 191 (408)
T 4a11_B 129 TNTLQTADVF-NFEETVYSHHMS---PVSTKHCLVAVGTRG--------PKVQLCDLKSGSCSHILQGH-R-Q---EILA 191 (408)
T ss_dssp TTTTEEEEEE-ECSSCEEEEEEC---SSCSSCCEEEEEESS--------SSEEEEESSSSCCCEEECCC-C-S---CEEE
T ss_pred CCCCccceec-cCCCceeeeEee---cCCCCCcEEEEEcCC--------CeEEEEeCCCcceeeeecCC-C-C---cEEE
Confidence 9887543332 222111111100 111234444444433 478889988664422 2211 1 1 1223
Q ss_pred EEEeC-Ce-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEE--------Ee----cCCCceeEEEEEeeCCcEEEEEEe
Q 016751 267 LNVFD-GY-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLY--------TI----EKPQRIWWPLGFTERGKIFIRGEC 332 (383)
Q Consensus 267 l~~~~-g~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~--------~i----~~~~~~~~~~~~~~~g~i~~~~~~ 332 (383)
+.... |. +.+....+ ..+.+|.+..... ...... .+ .........+.+..+|..++. .
T Consensus 192 ~~~~~~~~~ll~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~ 263 (408)
T 4a11_B 192 VSWSPRYDYILATASAD----SRVKLWDVRRASG--CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT--V 263 (408)
T ss_dssp EEECSSCTTEEEEEETT----SCEEEEETTCSSC--CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE--E
T ss_pred EEECCCCCcEEEEEcCC----CcEEEEECCCCCc--ccccccccccccceeeccccccccCceeEEEEcCCCCEEEE--e
Confidence 33333 44 55555544 4899998865320 000000 00 000003445666667766666 4
Q ss_pred eCCceEEEEEeCCCCeE
Q 016751 333 RHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 333 ~~~~~~~~~yd~~t~~~ 349 (383)
..++ .+.+||+++++.
T Consensus 264 ~~dg-~i~vwd~~~~~~ 279 (408)
T 4a11_B 264 GTDN-RMRLWNSSNGEN 279 (408)
T ss_dssp ETTS-CEEEEETTTCCB
T ss_pred cCCC-eEEEEECCCCcc
Confidence 3455 499999998753
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=87.53 E-value=6.5 Score=36.21 Aligned_cols=122 Identities=9% Similarity=0.034 Sum_probs=70.2
Q ss_pred CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe---CC-------CCCCCCCCCceEEEEe--CCeEEEEEecCCC--
Q 016751 218 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV---MM-------PYDLSTDDADKYLNVF--DGYLCVFATIPNN-- 283 (383)
Q Consensus 218 ~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i---~l-------P~~~~~~~~~~~l~~~--~g~L~~v~~~~~~-- 283 (383)
+|.++|....+ .+.++|+.++.-..+ .+ + .-..... ..++.. +++||++......
T Consensus 237 dG~~~~vs~~g---------~V~v~d~~~~~~~v~~~~~~~~~~~~~~-g~~p~g~-q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 237 AGRLVWPTYTG---------KIHQIDLSSGDAKFLPAVEALTEAERAD-GWRPGGW-QQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp TTEEEEEBTTS---------EEEEEECTTSSCEECCCEESSCHHHHHT-TEEECSS-SCEEEETTTTEEEEEEEECCTTC
T ss_pred CCcEEEEeCCC---------EEEEEECCCCcceeecceeccccccccc-cccCCCc-ceeeECCCCCeEEEEeccccccc
Confidence 78888876644 799999987653222 10 0 0000111 123333 4788887653210
Q ss_pred -CccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc--EEEEEEeeCCceEEEEEeCCCCeEE-EEEEecCc
Q 016751 284 -TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK--IFIRGECRHGGYGLLVYNPHSDTFK-CIGVHLPY 358 (383)
Q Consensus 284 -~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~--i~~~~~~~~~~~~~~~yd~~t~~~~-~v~~~~~~ 358 (383)
....-+||+++- ..+..+.+|+... ...-+++..+|+ +|.. ....+ .+.+||..|++.. .+...+.+
T Consensus 306 hk~~~~~V~viD~----~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~t--n~~~~-~VsViD~~t~k~~~~i~~~~~p 376 (386)
T 3sjl_D 306 HKTASRFVVVLDA----KTGERLAKFEMGH-EIDSINVSQDEKPLLYAL--STGDK-TLYIHDAESGEELRSVNQLGHG 376 (386)
T ss_dssp TTSCEEEEEEEET----TTCCEEEEEEEEE-EECEEEECSSSSCEEEEE--ETTTT-EEEEEETTTCCEEEEECCCCSS
T ss_pred cCCCCCEEEEEEC----CCCeEEEEEECCC-CcceEEECCCCCeEEEEE--cCCCC-eEEEEECCCCcEEEEecCCCCC
Confidence 123578999986 3466667776643 233467777774 4444 31234 5999999998754 55555543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.44 E-value=14 Score=32.34 Aligned_cols=199 Identities=10% Similarity=0.061 Sum_probs=94.0
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
-+.+|-.++... .++.+.+||..+++...+.... .....+.+.+. .+.-.++.......+.+|+.+++.-...
T Consensus 94 ~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 94 WSDDGSKVFTAS--CDKTAKMWDLSSNQAIQIAQHD--APVKTIHWIKA---PNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp ECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECS--SCEEEEEEEEC---SSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred ECcCCCEEEEEc--CCCcEEEEEcCCCCceeecccc--CceEEEEEEeC---CCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 344554443332 5778999999988877653311 11244555333 3333344444367899999887642211
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee--eEeCCCCCCCCCCCceEEEEe-CC-
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF--QTVMMPYDLSTDDADKYLNVF-DG- 272 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~--~~i~lP~~~~~~~~~~~l~~~-~g- 272 (383)
- ..+..... .......++. +... ..+..||+.+..- ..+..+ ... ....+... .+
T Consensus 167 ~-~~~~~~~~-------~~~~~~~~~~-~~~~--------~~i~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~ 225 (368)
T 3mmy_A 167 L-QLPERCYC-------ADVIYPMAVV-ATAE--------RGLIVYQLENQPSEFRRIESP-LKH---QHRCVAIFKDKQ 225 (368)
T ss_dssp E-ECSSCEEE-------EEEETTEEEE-EEGG--------GCEEEEECSSSCEEEEECCCS-CSS---CEEEEEEEECTT
T ss_pred E-ecCCCceE-------EEecCCeeEE-EeCC--------CcEEEEEeccccchhhhcccc-ccC---CCceEEEcccCC
Confidence 1 11111110 1222333333 3333 3788888876543 333322 111 11122221 11
Q ss_pred ---eEEEEEecCCCCccEEEEEEeccCCC-CCCeEEEE-Eec-CC--Cc----eeEEEEEeeCCcEEEEEEeeCCceEEE
Q 016751 273 ---YLCVFATIPNNTFRSYELWVMKEYGL-TESWTKLY-TIE-KP--QR----IWWPLGFTERGKIFIRGECRHGGYGLL 340 (383)
Q Consensus 273 ---~L~~v~~~~~~~~~~l~iW~l~~~~~-~~~W~~~~-~i~-~~--~~----~~~~~~~~~~g~i~~~~~~~~~~~~~~ 340 (383)
...++...+ ..+.+|.++.... ........ ... .. .. ....+.+..+|..++. ...++ .+.
T Consensus 226 ~~~~~~~~~~~d----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~~dg-~i~ 298 (368)
T 3mmy_A 226 NKPTGFALGSIE----GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLAT--VGSDG-RFS 298 (368)
T ss_dssp SCEEEEEEEETT----SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEE--EETTS-CEE
T ss_pred CCCCeEEEecCC----CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEE--EccCC-eEE
Confidence 223333333 5899999875311 11111110 000 00 00 1344556667766666 42455 499
Q ss_pred EEeCCCCeEE
Q 016751 341 VYNPHSDTFK 350 (383)
Q Consensus 341 ~yd~~t~~~~ 350 (383)
+||.++++..
T Consensus 299 iwd~~~~~~~ 308 (368)
T 3mmy_A 299 FWDKDARTKL 308 (368)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCcEE
Confidence 9999987653
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=87.35 E-value=18 Score=33.35 Aligned_cols=202 Identities=13% Similarity=0.051 Sum_probs=104.8
Q ss_pred eEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-c-CeEEEEEcCCC
Q 016751 114 DVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-N-ADAEVYSLRSN 191 (383)
Q Consensus 114 ~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~-~~~~vyss~t~ 191 (383)
.+....+|-|.+.+. ....+.++|+.+++...+....... . +.+++. .+ .++.... . ..+.+++..++
T Consensus 135 ~la~d~~g~lyv~d~--~~~~I~~id~~~g~~~~~~~~~~~~--~-ia~~~~---g~--~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQR--DDPRVRLISVDDNKVTTVHPGFKGG--K-PAVTKD---KQ--RVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp EEEECSTTEEEEEET--TTTEEEEEETTTTEEEEEEETCCBC--B-CEECTT---SS--EEEEEBSSTTCEEEEEEGGGT
T ss_pred EEEEeCCCCEEEEec--CCCcEEEEECCCCEEEEeeccCCCC--c-eeEecC---CC--cEEEEecCCCceEEEEEcCCC
Confidence 344456787777763 5678999999988776654432211 2 555554 32 2332222 2 26777777654
Q ss_pred c-eeeeccCCCc-eeeeccCcccceeEE---CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCc-
Q 016751 192 S-WKNIAYGFPR-SIEINRSHINSSVFL---NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDAD- 264 (383)
Q Consensus 192 ~-W~~~~~~~p~-~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~- 264 (383)
. .+.+. .... ... ... ++.+ +|.||+. ... ..|..||+.+.....+ ..+... .....
T Consensus 205 ~~~~~~g-~~~~~~~~--~p~---~iav~p~~g~lyv~-d~~--------~~I~~~d~~~~~~~~~~~~~~~g-~~~~~P 268 (409)
T 3hrp_A 205 WAPTRIG-QLGSTFSG--KIG---AVALDETEEWLYFV-DSN--------KNFGRFNVKTQEVTLIKQLELSG-SLGTNP 268 (409)
T ss_dssp TCEEEEE-ECCTTSCS--CCC---BCEECTTSSEEEEE-CTT--------CEEEEEETTTCCEEEEEECCCCS-CCCCSS
T ss_pred ceeEEee-eccchhcC--CcE---EEEEeCCCCeEEEE-ECC--------CcEEEEECCCCCEEEEecccccC-CCCCCc
Confidence 2 23332 1111 111 111 2332 6899993 322 4899999988765554 111011 11112
Q ss_pred e-EEEEe--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec-C----------CCc-eeEEEEEeeCCcEEEE
Q 016751 265 K-YLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE-K----------PQR-IWWPLGFTERGKIFIR 329 (383)
Q Consensus 265 ~-~l~~~--~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~----------~~~-~~~~~~~~~~g~i~~~ 329 (383)
. .++.. +|.|++...... . |++++..+ .-.....-. . ..+ ...-+++..+|.||+.
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~~----~--I~~~~~~g---~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNLS----S--VYKITPDG---ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp CCEEEEETTTTEEEEEETTTT----E--EEEECTTC---CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred cccEEEeCCCCEEEEEeCCCC----E--EEEEecCC---CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence 2 55555 578888765443 3 44444321 111111111 0 000 1233455667899998
Q ss_pred EEeeC-CceEEEEEeCCCCeEEEEE
Q 016751 330 GECRH-GGYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 330 ~~~~~-~~~~~~~yd~~t~~~~~v~ 353 (383)
. . ....+..+|+.++++..+.
T Consensus 340 --d-~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 340 --D-GFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp --E-TTTTCEEEEEETTTTEEEEEE
T ss_pred --e-CCCCCEEEEEECCCCEEEEEe
Confidence 6 3 3335999998888877663
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=87.20 E-value=14 Score=31.97 Aligned_cols=193 Identities=11% Similarity=0.121 Sum_probs=99.9
Q ss_pred EEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCcee
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWK 194 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~ 194 (383)
.-+.+|-.++... .++.+.++|..+++........... ....+.+.+. + . .++.......+.+|+.++++..
T Consensus 104 ~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-~-~l~~~~~dg~v~~~d~~~~~~~ 176 (337)
T 1gxr_A 104 KLLPDGCTLIVGG--EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---S-K-VCFSCCSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp EECTTSSEEEEEE--SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT---S-S-EEEEEETTSCEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEc--CCCcEEEEECCCCCcceeeecccCCCceEEEEECCC---C-C-EEEEEeCCCcEEEEeCCCCcee
Confidence 3444554433332 5778999998887633322221111 1245555553 2 2 2333333567899999887543
Q ss_pred eeccCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeE-eCCCCCCCCCCCceEEEEe-
Q 016751 195 NIAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVF- 270 (383)
Q Consensus 195 ~~~~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~- 270 (383)
..-........ ++.+ +|.....+... ..|..||+.+.+-.. +..+ .. ...+...
T Consensus 177 ~~~~~~~~~i~--------~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~-~~-----v~~~~~s~ 234 (337)
T 1gxr_A 177 RQFQGHTDGAS--------CIDISNDGTKLWTGGLD--------NTVRSWDLREGRQLQQHDFT-SQ-----IFSLGYCP 234 (337)
T ss_dssp EEECCCSSCEE--------EEEECTTSSEEEEEETT--------SEEEEEETTTTEEEEEEECS-SC-----EEEEEECT
T ss_pred eeeecccCceE--------EEEECCCCCEEEEEecC--------CcEEEEECCCCceEeeecCC-Cc-----eEEEEECC
Confidence 22101111111 2222 56555555433 589999998765433 2333 21 1223333
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
+|.+.++...+ ..+.+|.++.. . . ..+.........+.+..+|..++. ...++ .+..||.++++..
T Consensus 235 ~~~~l~~~~~~----~~i~~~~~~~~---~---~-~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg-~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 235 TGEWLAVGMES----SNVEVLHVNKP---D---K-YQLHLHESCVLSLKFAYCGKWFVS--TGKDN-LLNAWRTPYGASI 300 (337)
T ss_dssp TSSEEEEEETT----SCEEEEETTSS---C---E-EEECCCSSCEEEEEECTTSSEEEE--EETTS-EEEEEETTTCCEE
T ss_pred CCCEEEEEcCC----CcEEEEECCCC---C---e-EEEcCCccceeEEEECCCCCEEEE--ecCCC-cEEEEECCCCeEE
Confidence 35665555544 48999988752 1 1 122211113455666677776666 43455 4999999998765
Q ss_pred E
Q 016751 351 C 351 (383)
Q Consensus 351 ~ 351 (383)
.
T Consensus 301 ~ 301 (337)
T 1gxr_A 301 F 301 (337)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.91 E-value=15 Score=32.19 Aligned_cols=193 Identities=12% Similarity=0.052 Sum_probs=99.5
Q ss_pred ccCceEEEeecCCCCceEEEEccCccceee-cCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 118 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 118 s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
+.+|-++.... .++.+.+||..+++... +...+. ....+.+.|. + . .++.......+.+|+.+++.-...
T Consensus 89 ~~~~~~l~s~s--~D~~i~lWd~~~~~~~~~~~~~~~--~~~~~~~spd---g-~-~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 89 SHTLPIAASSS--LDAHIRLWDLENGKQIKSIDAGPV--DAWTLAFSPD---S-Q-YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp CSSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCTT--CCCCEEECTT---S-S-EEEEECTTSEEEEEETTTCSEEEE
T ss_pred CCCCCEEEEEe--CCCcEEEEECCCCCEEEEEeCCCc--cEEEEEECCC---C-C-EEEEEcCCCcEEEEEcCCCceeEE
Confidence 44455544443 67889999998876543 322111 1134556554 2 2 222222256788999887643211
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeE-eCCCCCCCCCCCceEEEEe-CCeE
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVF-DGYL 274 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~-~g~L 274 (383)
-.......... ...-+|.....+... ..|..+|+.+.+... +.-. .. ....+.-. +|++
T Consensus 160 ~~~~~~~v~~~------~~spdg~~lasg~~d--------g~i~iwd~~~~~~~~~~~~h-~~----~v~~l~~spd~~~ 220 (321)
T 3ow8_A 160 LDTRGKFILSI------AYSPDGKYLASGAID--------GIINIFDIATGKLLHTLEGH-AM----PIRSLTFSPDSQL 220 (321)
T ss_dssp EECSSSCEEEE------EECTTSSEEEEEETT--------SCEEEEETTTTEEEEEECCC-SS----CCCEEEECTTSCE
T ss_pred ecCCCceEEEE------EECCCCCEEEEEcCC--------CeEEEEECCCCcEEEEEccc-CC----ceeEEEEcCCCCE
Confidence 10111000000 122256554444433 478899998776432 2221 11 11233333 4565
Q ss_pred EEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 275 CVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 275 ~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
.+....+ ..+.+|.++.. .....+.........+++..+|..++. ...++ .+.++|+++++...
T Consensus 221 l~s~s~d----g~i~iwd~~~~------~~~~~~~~h~~~v~~~~~sp~~~~l~s--~s~D~-~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 221 LVTASDD----GYIKIYDVQHA------NLAGTLSGHASWVLNVAFCPDDTHFVS--SSSDK-SVKVWDVGTRTCVH 284 (321)
T ss_dssp EEEECTT----SCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSEEEE--EETTS-CEEEEETTTTEEEE
T ss_pred EEEEcCC----CeEEEEECCCc------ceeEEEcCCCCceEEEEECCCCCEEEE--EeCCC-cEEEEeCCCCEEEE
Confidence 5555444 58999988752 223333322213455666777776666 43455 49999999887543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.77 E-value=15 Score=32.04 Aligned_cols=187 Identities=7% Similarity=-0.025 Sum_probs=88.2
Q ss_pred CceEEEEccCccceeecCCCCCCCCceeEEEeccCCCC-CCeEEEEEEecCeEEEEEcCCCc--eeeeccCCCceee---
Q 016751 132 RSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHL-DDFKVVTISVNADAEVYSLRSNS--WKNIAYGFPRSIE--- 205 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~-~~ykVv~~~~~~~~~vyss~t~~--W~~~~~~~p~~~~--- 205 (383)
++.+.|||..+++...+...........+.+.+. . +.-.++.......+.+|+..++. -.... .......
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~ 118 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGAT---SLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAID 118 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTC---CTTTCCEEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEE
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCC---CCCCceEEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEe
Confidence 5678888888776554322221112244555543 2 11223333336688999988764 22222 1111111
Q ss_pred eccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCe--eeEeCCCCCCCCCCCceEEE-----EeCCeEEEEE
Q 016751 206 INRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTVMMPYDLSTDDADKYLN-----VFDGYLCVFA 278 (383)
Q Consensus 206 ~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~--~~~i~lP~~~~~~~~~~~l~-----~~~g~L~~v~ 278 (383)
+.... +..-+|.....+... ..|..+|+.+.. ...+..+ ..........+. .-+|.+.++.
T Consensus 119 ~~~~~---~~s~~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~ 186 (357)
T 3i2n_A 119 GIGGL---GIGEGAPEIVTGSRD--------GTVKVWDPRQKDDPVANMEPV-QGENKRDCWTVAFGNAYNQEERVVCAG 186 (357)
T ss_dssp EESGG---GCC-CCCEEEEEETT--------SCEEEECTTSCSSCSEEECCC-TTSCCCCEEEEEEECCCC-CCCEEEEE
T ss_pred ecccc---ccCCCccEEEEEeCC--------CeEEEEeCCCCCCcceecccc-CCCCCCceEEEEEEeccCCCCCEEEEE
Confidence 00000 112345444444333 478999998764 4444433 221111112222 1356666666
Q ss_pred ecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEee---CCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 279 TIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTE---RGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 279 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~---~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
..+ ..+.+|.++.. .......... ....+.+.. ++..++. ...++ .+..||+++++
T Consensus 187 ~~d----~~i~i~d~~~~------~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~--~~~dg-~i~i~d~~~~~ 245 (357)
T 3i2n_A 187 YDN----GDIKLFDLRNM------ALRWETNIKN-GVCSLEFDRKDISMNKLVA--TSLEG-KFHVFDMRTQH 245 (357)
T ss_dssp ETT----SEEEEEETTTT------EEEEEEECSS-CEEEEEESCSSSSCCEEEE--EESTT-EEEEEEEEEEE
T ss_pred ccC----CeEEEEECccC------ceeeecCCCC-ceEEEEcCCCCCCCCEEEE--ECCCC-eEEEEeCcCCC
Confidence 554 48999988752 1122222222 244455554 5555555 32455 37788876543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=86.71 E-value=15 Score=31.76 Aligned_cols=206 Identities=8% Similarity=0.126 Sum_probs=95.1
Q ss_pred ceEEEeecCCCCceEEEEccCccceeecCCCCCCCC-ceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC-ceeeecc
Q 016751 121 GVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN-SWKNIAY 198 (383)
Q Consensus 121 Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~-~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~-~W~~~~~ 198 (383)
|-++.... .++.+.|||..++++..+........ ...+.+.|. ...-.++.......+.+|+.+++ .+.....
T Consensus 67 g~~l~s~s--~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~---~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 67 GTILASCS--YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH---EYGPMLLVASSDGKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp CSEEEEEE--TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCG---GGCSEEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred CCEEEEEc--CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcC---CCCcEEEEEECCCcEEEEEecCCCceeeeee
Confidence 55555443 67889999998876543322221111 245556553 22223443333668899998765 3321110
Q ss_pred -CCCceee---eccCccc----ceeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeEe-CCCCCCCCCCCceEE
Q 016751 199 -GFPRSIE---INRSHIN----SSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQTV-MMPYDLSTDDADKYL 267 (383)
Q Consensus 199 -~~p~~~~---~~~~~~~----~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~i-~lP~~~~~~~~~~~l 267 (383)
....... +...... .....+|.....+..+ ..|..+|+.+. .+... .+. .+.. ....+
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D--------~~v~lwd~~~~~~~~~~~~~l~-~H~~--~V~~v 210 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD--------NLVKIWKYNSDAQTYVLESTLE-GHSD--WVRDV 210 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETT--------SCEEEEEEETTTTEEEEEEEEC-CCSS--CEEEE
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCC--------CcEEEEEEcCCCceEEEEEEec-CCCC--ceEEE
Confidence 1111000 1000000 0000113344433332 46777777653 34333 333 2211 11223
Q ss_pred EEeC----CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe--cCCCceeEEEEEeeCCcEEEEEEeeCCceEEEE
Q 016751 268 NVFD----GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI--EKPQRIWWPLGFTERGKIFIRGECRHGGYGLLV 341 (383)
Q Consensus 268 ~~~~----g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i--~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 341 (383)
.-.. +.+.+....+ ..+.||.++.. ...|...... .... ....+.+..+|.++.. ...++. +..
T Consensus 211 ~~sp~~~~~~~las~s~D----~~v~iWd~~~~--~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las--~~~D~~-v~l 280 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQD----RTCIIWTQDNE--QGPWKKTLLKEEKFPD-VLWRASWSLSGNVLAL--SGGDNK-VTL 280 (297)
T ss_dssp EECCCCSSSEEEEEEETT----SCEEEEEESST--TSCCEEEESSSSCCSS-CEEEEEECSSSCCEEE--EETTSC-EEE
T ss_pred EECCCCCCceEEEEEECC----CcEEEEEeCCC--CCccceeeeecccCCC-cEEEEEECCCCCEEEE--EcCCCc-EEE
Confidence 3222 2444444444 59999998752 2346542210 1111 2444566677766665 424553 888
Q ss_pred EeCCC-CeEEEE
Q 016751 342 YNPHS-DTFKCI 352 (383)
Q Consensus 342 yd~~t-~~~~~v 352 (383)
++... ++|+.+
T Consensus 281 w~~~~~g~w~~~ 292 (297)
T 2pm7_B 281 WKENLEGKWEPA 292 (297)
T ss_dssp EEECTTSCEEEC
T ss_pred EEECCCCcEEec
Confidence 87763 567654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=86.65 E-value=13 Score=33.01 Aligned_cols=205 Identities=9% Similarity=-0.064 Sum_probs=85.2
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccc-eeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKK-YMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS 192 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~-~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~ 192 (383)
+.-+.+|-+++... .++.+.|||..+++ +.......... ....+.+.+. .. .++.......+.+|+.+++.
T Consensus 61 ~~~s~~~~~l~s~s--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~--~l~~~~~d~~i~iwd~~~~~ 133 (377)
T 3dwl_C 61 VDWAPKSNRIVTCS--QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN---ED--KFAVGSGARVISVCYFEQEN 133 (377)
T ss_dssp EEECTTTCCEEEEE--TTSSEEEC------CCCCEEECCCCSSCEEEEECCTT---SS--CCEEEESSSCEEECCC----
T ss_pred EEEeCCCCEEEEEe--CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC---CC--EEEEEecCCeEEEEEECCcc
Confidence 33455565444432 57789999998876 22221111111 1244555543 22 23333335678888887754
Q ss_pred -eeeeccCCCc--eeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCC--C-----------
Q 016751 193 -WKNIAYGFPR--SIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMP--Y----------- 256 (383)
Q Consensus 193 -W~~~~~~~p~--~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP--~----------- 256 (383)
|.... .+.. .... ..- ...-+|.+...+... ..|..||+.+.....-..| +
T Consensus 134 ~~~~~~-~~~~~h~~~v-~~~---~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (377)
T 3dwl_C 134 DWWVSK-HLKRPLRSTI-LSL---DWHPNNVLLAAGCAD--------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA 200 (377)
T ss_dssp -CCCCE-EECSSCCSCE-EEE---EECTTSSEEEEEESS--------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred cceeee-EeecccCCCe-EEE---EEcCCCCEEEEEeCC--------CEEEEEEEEecccCCCccccccccccchhhhhh
Confidence 54332 1111 1000 000 111245544444333 4688888864332111000 0
Q ss_pred CCCCCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCC
Q 016751 257 DLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG 335 (383)
Q Consensus 257 ~~~~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~ 335 (383)
..........+.-. +|++.+....+ ..+.+|.+.... .....+..+.........+.+..+|.+++. . .+
T Consensus 201 ~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~-~~ 271 (377)
T 3dwl_C 201 EYPSGGWVHAVGFSPSGNALAYAGHD----SSVTIAYPSAPE--QPPRALITVKLSQLPLRSLLWANESAIVAA--G-YN 271 (377)
T ss_dssp CCCCSSSEEEEEECTTSSCEEEEETT----TEEC-CEECSTT--SCEEECCCEECSSSCEEEEEEEETTEEEEE--E-SS
T ss_pred cccCCceEEEEEECCCCCEEEEEeCC----CcEEEEECCCCC--CcceeeEeecCCCCceEEEEEcCCCCEEEE--E-cC
Confidence 00000011223333 35555545444 489999998632 212222233222212455667778887777 5 44
Q ss_pred ceEEEEEeCCCCeE
Q 016751 336 GYGLLVYNPHSDTF 349 (383)
Q Consensus 336 ~~~~~~yd~~t~~~ 349 (383)
.. ++.|+...+.+
T Consensus 272 ~~-~~~~~~~~~~~ 284 (377)
T 3dwl_C 272 YS-PILLQGNESGW 284 (377)
T ss_dssp SS-EEEECCCC---
T ss_pred Cc-EEEEEeCCCce
Confidence 43 66787775443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=86.61 E-value=16 Score=32.16 Aligned_cols=199 Identities=8% Similarity=-0.045 Sum_probs=98.5
Q ss_pred ccCceEEEeecCCCCceEEEEccCccceeecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc-eee
Q 016751 118 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS-WKN 195 (383)
Q Consensus 118 s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~-W~~ 195 (383)
+.+|-+++... .++.+.+||..+++....-...... ....+.+.+. . . .++.......+.+|+.+++. |..
T Consensus 61 ~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~-~l~~~~~d~~v~i~d~~~~~~~~~ 133 (372)
T 1k8k_C 61 APDSNRIVTCG--TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN---E-K-KFAVGSGSRVISICYFEQENDWWV 133 (372)
T ss_dssp ETTTTEEEEEE--TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT---S-S-EEEEEETTSSEEEEEEETTTTEEE
T ss_pred eCCCCEEEEEc--CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC---C-C-EEEEEeCCCEEEEEEecCCCccee
Confidence 44554444432 5778999999888754432222111 2255666654 2 2 33333335678888887643 433
Q ss_pred eccC-CCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCe----------------eeEe-CCCCC
Q 016751 196 IAYG-FPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI----------------FQTV-MMPYD 257 (383)
Q Consensus 196 ~~~~-~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~----------------~~~i-~lP~~ 257 (383)
.... .+..... ..- ...-+|.....+... ..|..||+.... -..+ .++ .
T Consensus 134 ~~~~~~~~~~~i-~~~---~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (372)
T 1k8k_C 134 CKHIKKPIRSTV-LSL---DWHPNSVLLAAGSCD--------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-S 200 (372)
T ss_dssp EEEECTTCCSCE-EEE---EECTTSSEEEEEETT--------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-C
T ss_pred eeeeecccCCCe-eEE---EEcCCCCEEEEEcCC--------CCEEEEEcccccccccccccccccccchhhheEecC-C
Confidence 3201 1111000 000 112245554444433 478888864211 1111 111 1
Q ss_pred CCCCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc
Q 016751 258 LSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG 336 (383)
Q Consensus 258 ~~~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 336 (383)
.. .....+.-. +|.+.++...+ ..+.+|.++.. ..+..+.........+.+..+|.++.. . .++
T Consensus 201 ~~--~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~--~-~d~ 265 (372)
T 1k8k_C 201 SC--GWVHGVCFSANGSRVAWVSHD----STVCLADADKK------MAVATLASETLPLLAVTFITESSLVAA--G-HDC 265 (372)
T ss_dssp CS--SCEEEEEECSSSSEEEEEETT----TEEEEEEGGGT------TEEEEEECSSCCEEEEEEEETTEEEEE--E-TTS
T ss_pred CC--CeEEEEEECCCCCEEEEEeCC----CEEEEEECCCC------ceeEEEccCCCCeEEEEEecCCCEEEE--E-eCC
Confidence 11 011223332 45555555544 48999998762 123333322212455666778887777 5 565
Q ss_pred eEEEEEeCCC--CeEEEE
Q 016751 337 YGLLVYNPHS--DTFKCI 352 (383)
Q Consensus 337 ~~~~~yd~~t--~~~~~v 352 (383)
. +..||+++ ++|..+
T Consensus 266 ~-i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 266 F-PVLFTYDSAAGKLSFG 282 (372)
T ss_dssp S-CEEEEEETTTTEEEEC
T ss_pred e-EEEEEccCcCceEEEe
Confidence 4 89999988 877654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=86.53 E-value=18 Score=32.69 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=53.9
Q ss_pred cEEEEEECCCCeee-EeCCCCCCCCCCCceEEEEe-CCeEEEEE-ecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 016751 237 WLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNVF-DGYLCVFA-TIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR 313 (383)
Q Consensus 237 ~~il~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~-~g~L~~v~-~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 313 (383)
..|..||+.+.+.. .+..+ .. ...+.-. +|+..++. +... ..+.+|.+.. ........+.....
T Consensus 284 ~~i~i~d~~~~~~~~~~~~~-~~-----v~~~~~s~~~~~l~~~~g~~d---g~i~v~~~~~----~~~~~~~~~~~h~~ 350 (401)
T 4aez_A 284 KQIHFWNAATGARVNTVDAG-SQ-----VTSLIWSPHSKEIMSTHGFPD---NNLSIWSYSS----SGLTKQVDIPAHDT 350 (401)
T ss_dssp CEEEEEETTTCCEEEEEECS-SC-----EEEEEECSSSSEEEEEECTTT---CEEEEEEEET----TEEEEEEEEECCSS
T ss_pred CEEEEEECCCCCEEEEEeCC-Cc-----EEEEEECCCCCeEEEEeecCC---CcEEEEecCC----ccceeEEEecCCCC
Confidence 58899998776543 23322 11 1223322 35544443 3333 5999999986 33555555543221
Q ss_pred eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 314 IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 314 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
....+.+..+|..++. ...++ .+..||+.+++..
T Consensus 351 ~v~~~~~s~dg~~l~s--~~~dg-~i~iw~~~~~~~~ 384 (401)
T 4aez_A 351 RVLYSALSPDGRILST--AASDE-NLKFWRVYDGDHV 384 (401)
T ss_dssp CCCEEEECTTSSEEEE--ECTTS-EEEEEECCC----
T ss_pred CEEEEEECCCCCEEEE--EeCCC-cEEEEECCCCccc
Confidence 2444566677877666 43455 4999999987654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=86.31 E-value=17 Score=32.17 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=65.6
Q ss_pred EECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-C---CCCCCCCCCCceEEEEe-CCeEEEEEecC-CCCccEE
Q 016751 216 FLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-M---MPYDLSTDDADKYLNVF-DGYLCVFATIP-NNTFRSY 288 (383)
Q Consensus 216 ~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~---lP~~~~~~~~~~~l~~~-~g~L~~v~~~~-~~~~~~l 288 (383)
.-+|. +|...... ..|..||+.+.++..+ . .| .... ....++.. +|+..++.... . ..+
T Consensus 219 spdg~~l~v~~~~~--------~~v~v~~~~~g~~~~~~~~~~~~-~~~~--~~~~i~~spdg~~l~v~~~~~~---~~i 284 (361)
T 3scy_A 219 NSDGKFAYLINEIG--------GTVIAFRYADGMLDEIQTVAADT-VNAQ--GSGDIHLSPDGKYLYASNRLKA---DGV 284 (361)
T ss_dssp CTTSSEEEEEETTT--------CEEEEEEEETTEEEEEEEEESCS-SCCC--CEEEEEECTTSSEEEEEECSSS---CEE
T ss_pred cCCCCEEEEEcCCC--------CeEEEEEecCCceEEeEEEecCC-CCCC--CcccEEECCCCCEEEEECCCCC---CEE
Confidence 34675 55544322 4799999888776554 2 22 2111 12234443 46543343333 3 589
Q ss_pred EEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCce-EEEEEeCCCCeEEEE
Q 016751 289 ELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGY-GLLVYNPHSDTFKCI 352 (383)
Q Consensus 289 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~yd~~t~~~~~v 352 (383)
.+|.++.. ...+..+..++... ...-+++..+|+.+++. ...+.. .++.+|+++++++.+
T Consensus 285 ~v~~~~~~--~g~~~~~~~~~~g~-~~~~~~~spdg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 285 AIFKVDET--NGTLTKVGYQLTGI-HPRNFIITPNGKYLLVA-CRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEECTT--TCCEEEEEEEECSS-CCCEEEECTTSCEEEEE-ETTTTEEEEEEECTTTCCEEEC
T ss_pred EEEEEcCC--CCcEEEeeEecCCC-CCceEEECCCCCEEEEE-ECCCCCEEEEEEECCCCcEeec
Confidence 99999742 24566766666521 23446677778644441 312332 345578889988776
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=85.57 E-value=18 Score=31.61 Aligned_cols=211 Identities=10% Similarity=0.000 Sum_probs=106.1
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-c----CeEEEEEcC
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-N----ADAEVYSLR 189 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~----~~~~vyss~ 189 (383)
+.-+.+|-|.+... ....++++|+.+++...+.... .....++.+++. . . ++.... . ..+.+|+..
T Consensus 50 ~~~~~~g~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~d---g-~--l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 50 LNFDRQGQLFLLDV--FEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKD---G-R--LFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp EEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTT---S-C--EEEEECTTSSSCCEEEEECTT
T ss_pred cEECCCCCEEEEEC--CCCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCC---C-c--EEEEeCCCCCCCceEEEEeCC
Confidence 33446677766543 4668999999998877653211 112256666654 3 2 222222 2 478888888
Q ss_pred CCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEE
Q 016751 190 SNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV 269 (383)
Q Consensus 190 t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~ 269 (383)
++.-+..-......... ..- .+.-+|.+|+..... ........|..+|..+.++..+.-. .. ....++.
T Consensus 121 ~~~~~~~~~~~~~~~~~-~~i---~~d~~g~l~v~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~--~~---~~~~i~~ 189 (333)
T 2dg1_A 121 GDNLQDIIEDLSTAYCI-DDM---VFDSKGGFYFTDFRG--YSTNPLGGVYYVSPDFRTVTPIIQN--IS---VANGIAL 189 (333)
T ss_dssp SCSCEEEECSSSSCCCE-EEE---EECTTSCEEEEECCC--BTTBCCEEEEEECTTSCCEEEEEEE--ES---SEEEEEE
T ss_pred CCEEEEEEccCccCCcc-cce---EECCCCCEEEEeccc--cccCCCceEEEEeCCCCEEEEeecC--CC---cccceEE
Confidence 77655222011111000 000 222368777654321 0011235799999887666554211 00 1122333
Q ss_pred e-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEE-E--ecCCC-ceeEEEEEeeCCcEEEEEEeeCCceEEEEEe
Q 016751 270 F-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLY-T--IEKPQ-RIWWPLGFTERGKIFIRGECRHGGYGLLVYN 343 (383)
Q Consensus 270 ~-~g~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~-~--i~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd 343 (383)
. +|+ |++..... ..+.+|.++..+ ....... . ..... ....-+++..+|.+++. ...++ .+..||
T Consensus 190 ~~dg~~l~v~~~~~----~~i~~~d~~~~g--~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~--~~~~~-~v~~~d 260 (333)
T 2dg1_A 190 STDEKVLWVTETTA----NRLHRIALEDDG--VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA--MYGQG-RVLVFN 260 (333)
T ss_dssp CTTSSEEEEEEGGG----TEEEEEEECTTS--SSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE--EETTT-EEEEEC
T ss_pred CCCCCEEEEEeCCC----CeEEEEEecCCC--cCcccccceEEEecCCCCCCCceEECCCCCEEEE--EcCCC-EEEEEC
Confidence 3 354 66665433 367777665321 1222111 1 11111 02333556677888887 42334 499999
Q ss_pred CCCCeEEEEEE
Q 016751 344 PHSDTFKCIGV 354 (383)
Q Consensus 344 ~~t~~~~~v~~ 354 (383)
++.+..+.+..
T Consensus 261 ~~g~~~~~~~~ 271 (333)
T 2dg1_A 261 KRGYPIGQILI 271 (333)
T ss_dssp TTSCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 97776666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=85.52 E-value=31 Score=34.42 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=99.2
Q ss_pred EEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCC-cee
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSN-SWK 194 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~-~W~ 194 (383)
.-+.+|-.+.... .++.+.|||..+++....-.... .....+.+.|. + .+ ++.......+.+|+..++ ...
T Consensus 62 ~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~-~~v~~~~~s~~---~-~~-l~~~~~dg~i~vw~~~~~~~~~ 133 (814)
T 3mkq_A 62 KFIARKNWIIVGS--DDFRIRVFNYNTGEKVVDFEAHP-DYIRSIAVHPT---K-PY-VLSGSDDLTVKLWNWENNWALE 133 (814)
T ss_dssp EEEGGGTEEEEEE--TTSEEEEEETTTCCEEEEEECCS-SCEEEEEECSS---S-SE-EEEEETTSEEEEEEGGGTSEEE
T ss_pred EEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEecCC-CCEEEEEEeCC---C-CE-EEEEcCCCEEEEEECCCCceEE
Confidence 3344554443332 57899999998877554221111 11245556554 2 22 333333668899998775 222
Q ss_pred eeccCCCceeeeccCcccceeEE---CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEe
Q 016751 195 NIAYGFPRSIEINRSHINSSVFL---NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF 270 (383)
Q Consensus 195 ~~~~~~p~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~ 270 (383)
..-........ ++.+ +|.....+... ..|..+|+.+..-... ..+ ... ....+.-.
T Consensus 134 ~~~~~~~~~v~--------~~~~~p~~~~~l~~~~~d--------g~v~vwd~~~~~~~~~~~~~-~~~---~v~~~~~~ 193 (814)
T 3mkq_A 134 QTFEGHEHFVM--------CVAFNPKDPSTFASGCLD--------RTVKVWSLGQSTPNFTLTTG-QER---GVNYVDYY 193 (814)
T ss_dssp EEEECCSSCEE--------EEEEETTEEEEEEEEETT--------SEEEEEETTCSSCSEEEECC-CTT---CCCEEEEC
T ss_pred EEEcCCCCcEE--------EEEEEcCCCCEEEEEeCC--------CeEEEEECCCCcceeEEecC-CCC---CEEEEEEE
Confidence 21101111111 2222 45454444433 5899999876543222 222 111 11223322
Q ss_pred ---CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 016751 271 ---DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 271 ---~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
+|.+.++...+ ..+.+|.++. ......+.........+.+..+|.+++. ...++ .+..||+.++
T Consensus 194 ~~~~~~~l~~~~~d----g~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg-~v~vwd~~~~ 260 (814)
T 3mkq_A 194 PLPDKPYMITASDD----LTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTLPIIIS--GSEDG-TLKIWNSSTY 260 (814)
T ss_dssp CSTTCCEEEEECTT----SEEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSEEEE--EETTS-CEEEEETTTC
T ss_pred ECCCCCEEEEEeCC----CEEEEEECCC------CcEEEEEcCCCCCEEEEEEcCCCCEEEE--EeCCC-eEEEEECCCC
Confidence 46665555544 4899998764 1233334322112455666777776666 42455 3999999986
Q ss_pred eEE
Q 016751 348 TFK 350 (383)
Q Consensus 348 ~~~ 350 (383)
+..
T Consensus 261 ~~~ 263 (814)
T 3mkq_A 261 KVE 263 (814)
T ss_dssp SEE
T ss_pred cEE
Confidence 643
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=85.51 E-value=18 Score=31.60 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=62.4
Q ss_pred ECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEecc
Q 016751 217 LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKE 295 (383)
Q Consensus 217 ~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~ 295 (383)
-+|.+||..... ..|..||+.+.++..+..+ ... ....++.. +|+|++........... |++++.
T Consensus 54 ~~g~l~~~~~~~--------~~i~~~d~~~~~~~~~~~~-~~~---~~~~i~~~~dg~l~v~~~~~~~~~~~--i~~~d~ 119 (333)
T 2dg1_A 54 RQGQLFLLDVFE--------GNIFKINPETKEIKRPFVS-HKA---NPAAIKIHKDGRLFVCYLGDFKSTGG--IFAATE 119 (333)
T ss_dssp TTSCEEEEETTT--------CEEEEECTTTCCEEEEEEC-SSS---SEEEEEECTTSCEEEEECTTSSSCCE--EEEECT
T ss_pred CCCCEEEEECCC--------CEEEEEeCCCCcEEEEeeC-CCC---CcceEEECCCCcEEEEeCCCCCCCce--EEEEeC
Confidence 368888876543 4899999998887665322 111 12344444 57887776543111123 444443
Q ss_pred CCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeC------CceEEEEEeCCCCeEEEE
Q 016751 296 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH------GGYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 296 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~------~~~~~~~yd~~t~~~~~v 352 (383)
.. ..-.....-.........+.+..+|.+++. ... .. .++.+|+++++++.+
T Consensus 120 ~~--~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~~~~~~-~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 120 NG--DNLQDIIEDLSTAYCIDDMVFDSKGGFYFT--DFRGYSTNPLG-GVYYVSPDFRTVTPI 177 (333)
T ss_dssp TS--CSCEEEECSSSSCCCEEEEEECTTSCEEEE--ECCCBTTBCCE-EEEEECTTSCCEEEE
T ss_pred CC--CEEEEEEccCccCCcccceEECCCCCEEEE--eccccccCCCc-eEEEEeCCCCEEEEe
Confidence 21 111211110111112344556677888887 411 13 599999988776654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=85.43 E-value=17 Score=31.42 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=66.7
Q ss_pred eEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEe
Q 016751 215 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM 293 (383)
Q Consensus 215 v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l 293 (383)
...++.+|.+.... ..+.+||..+.+- ..++.+ .. ...|+.-+++|++..+ . . .|+++
T Consensus 102 t~~g~~Ly~ltw~~--------~~v~V~D~~Tl~~~~ti~~~-~e-----GwGLt~Dg~~L~vSdG-s----~--~l~~i 160 (268)
T 3nok_A 102 ASDGERLYQLTWTE--------GLLFTWSGMPPQRERTTRYS-GE-----GWGLCYWNGKLVRSDG-G----T--MLTFH 160 (268)
T ss_dssp EECSSCEEEEESSS--------CEEEEEETTTTEEEEEEECS-SC-----CCCEEEETTEEEEECS-S----S--EEEEE
T ss_pred EEeCCEEEEEEccC--------CEEEEEECCcCcEEEEEeCC-Cc-----eeEEecCCCEEEEECC-C----C--EEEEE
Confidence 34567888887665 6899999987655 445555 22 2345666778887753 2 2 46666
Q ss_pred ccCCCCCCeEEEEEecCCCc-----eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE-EEEEe
Q 016751 294 KEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK-CIGVH 355 (383)
Q Consensus 294 ~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~-~v~~~ 355 (383)
+-. .. ..+.+|..... ...-+.. .+|.||.. . .....+...|++|++.. .++..
T Consensus 161 Dp~--T~--~v~~~I~V~~~g~~v~~lNeLe~-~dG~lyan--v-w~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 161 EPD--GF--ALVGAVQVKLRGQPVELINELEC-ANGVIYAN--I-WHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp CTT--TC--CEEEEEECEETTEECCCEEEEEE-ETTEEEEE--E-TTCSEEEEECTTTCBEEEEEECH
T ss_pred cCC--CC--eEEEEEEeCCCCcccccccccEE-eCCEEEEE--E-CCCCeEEEEeCCCCcEEEEEECC
Confidence 642 12 33344443210 1122222 37788876 5 44446999999999865 55654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=85.28 E-value=21 Score=32.14 Aligned_cols=204 Identities=10% Similarity=0.092 Sum_probs=95.1
Q ss_pred ccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeec
Q 016751 118 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIA 197 (383)
Q Consensus 118 s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~ 197 (383)
+.+|-+++... .++.+.|||..+++....-..... ....+.+.|. + .+ ++.......+.+|+..+..-+...
T Consensus 75 sp~~~~l~s~s--~D~~v~iWd~~~~~~~~~~~~h~~-~v~~~~~s~~---g-~~-las~~~d~~v~iw~~~~~~~~~~~ 146 (380)
T 3iz6_a 75 TPEKNWIVSAS--QDGRLIVWNALTSQKTHAIKLHCP-WVMECAFAPN---G-QS-VACGGLDSACSIFNLSSQADRDGN 146 (380)
T ss_dssp CTTSSCEEEEE--TTSEEEEEETTTTEEEEEEECCCT-TCCCCEECTT---S-SE-EEECCSSSCCEEEECCCCSSCCCS
T ss_pred cCCCCEEEEEe--CCCeEEEEECCCCccceEEecCCC-CEEEEEECCC---C-CE-EEEeeCCCcEEEEECCCCccccCC
Confidence 44554444432 677899999988765432111111 1133445543 2 22 333223567788887654322111
Q ss_pred cCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe---CCCCCCCCCCCceEEEE--e
Q 016751 198 YGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV---MMPYDLSTDDADKYLNV--F 270 (383)
Q Consensus 198 ~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i---~lP~~~~~~~~~~~l~~--~ 270 (383)
.........+........+. ++.....+.. ...|..+|+.+..-... ..| ..... ....+.. .
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~--------D~~i~~wd~~~~~~~~~~~~~~~-~~h~~-~v~~~~~~~~ 216 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSG--------DQTCVLWDVTTGQRISIFGSEFP-SGHTA-DVLSLSINSL 216 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECT--------TSCEEEECTTTCCEEEEECCCSS-SSCCS-CEEEEEECSS
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECC--------CCcEEEEEcCCCcEEEEeecccC-CCCcc-CeEEEEeecC
Confidence 00000000011000001111 1221122222 24788899987754332 222 11111 1122322 2
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 271 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 271 ~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
++.+.+.+..+ ..+.+|-+..... .+..+.-.......+.+..+|..++. ...++ .+..+|+++++..
T Consensus 217 ~~~~l~sgs~D----~~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~-~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 217 NANMFISGSCD----TTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQRFGT--GSDDG-TCRLFDMRTGHQL 284 (380)
T ss_dssp SCCEEEEEETT----SCEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTSSEEEE--ECSSS-CEEEEETTTTEEE
T ss_pred CCCEEEEEECC----CeEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCCCeEEE--EcCCC-eEEEEECCCCcEE
Confidence 56676666655 4899998864211 11122211112444666777877776 43455 4999999998654
Q ss_pred E
Q 016751 351 C 351 (383)
Q Consensus 351 ~ 351 (383)
.
T Consensus 285 ~ 285 (380)
T 3iz6_a 285 Q 285 (380)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.23 E-value=21 Score=32.10 Aligned_cols=196 Identities=12% Similarity=0.077 Sum_probs=96.2
Q ss_pred ceEEEeecCCCCceEEEEccCccc------eeecC-CCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc
Q 016751 121 GVLCFCSNGSDRSLIYLWNPLIKK------YMTLP-RPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS 192 (383)
Q Consensus 121 Gll~~~~~~~~~~~~~v~NP~t~~------~~~LP-~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~ 192 (383)
|-+++... .++.+.+||..+++ ..... ...... ....+.+.+. .. ..++.......+.+|+.+++.
T Consensus 126 ~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~-~~l~~~~~dg~v~iwd~~~~~ 199 (416)
T 2pm9_A 126 DNVLASGG--NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS---LA-HVFASAGSSNFASIWDLKAKK 199 (416)
T ss_dssp TTBEEEEC--SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSS---CT-TEEEEESSSSCEEEEETTTTE
T ss_pred CCEEEEEc--CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCC---CC-cEEEEEcCCCCEEEEECCCCC
Confidence 44444432 57789999998876 22111 111111 1255666654 33 334433336679999998875
Q ss_pred eeeeccCCCceee--eccCcccceeEE--Cc-eEEEEEeeccCCCCCCCcEEEEEECCCCe--eeEeCCCCCCCCCCCce
Q 016751 193 WKNIAYGFPRSIE--INRSHINSSVFL--NG-SVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTVMMPYDLSTDDADK 265 (383)
Q Consensus 193 W~~~~~~~p~~~~--~~~~~~~~~v~~--~G-~lYw~~~~~~~~~~~~~~~il~fD~~~~~--~~~i~lP~~~~~~~~~~ 265 (383)
-...- ..+.... ...-. ++.+ +| .+...+... .....|..||+.+.. ...+... .. ....
T Consensus 200 ~~~~~-~~~~~~~~~~~~v~---~~~~~~~~~~~l~~~~~d-----~~~~~i~~~d~~~~~~~~~~~~~~-~~---~~v~ 266 (416)
T 2pm9_A 200 EVIHL-SYTSPNSGIKQQLS---VVEWHPKNSTRVATATGS-----DNDPSILIWDLRNANTPLQTLNQG-HQ---KGIL 266 (416)
T ss_dssp EEEEE-CCCCCSSCCCCCEE---EEEECSSCTTEEEEEECC-----SSSCCCCEEETTSTTSCSBCCCSC-CS---SCEE
T ss_pred cceEE-eccccccccCCceE---EEEECCCCCCEEEEEECC-----CCCceEEEEeCCCCCCCcEEeecC-cc---Ccee
Confidence 43222 1111000 00000 2222 33 344444332 011268889988742 1111101 11 1122
Q ss_pred EEEEe--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCC-cEEEEEEeeCCceEEEEE
Q 016751 266 YLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVY 342 (383)
Q Consensus 266 ~l~~~--~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~~~~y 342 (383)
.+.-. +|.+.+....+ ..+.+|.++.. ..+..+.........+.+..++ .+++. ...++ .+..|
T Consensus 267 ~~~~s~~~~~~l~s~~~d----g~v~~wd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~d~-~i~iw 333 (416)
T 2pm9_A 267 SLDWCHQDEHLLLSSGRD----NTVLLWNPESA------EQLSQFPARGNWCFKTKFAPEAPDLFAC--ASFDN-KIEVQ 333 (416)
T ss_dssp EEEECSSCSSCEEEEESS----SEEEEECSSSC------CEEEEEECSSSCCCCEEECTTCTTEEEE--CCSSS-EEEEE
T ss_pred EEEeCCCCCCeEEEEeCC----CCEEEeeCCCC------ccceeecCCCCceEEEEECCCCCCEEEE--EecCC-cEEEE
Confidence 33333 46666666555 48999987651 2334443221124445666666 67776 43455 49999
Q ss_pred eCCCCe
Q 016751 343 NPHSDT 348 (383)
Q Consensus 343 d~~t~~ 348 (383)
|+++.+
T Consensus 334 ~~~~~~ 339 (416)
T 2pm9_A 334 TLQNLT 339 (416)
T ss_dssp ESCCCC
T ss_pred EccCCC
Confidence 998765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=85.12 E-value=28 Score=33.46 Aligned_cols=189 Identities=8% Similarity=-0.012 Sum_probs=98.5
Q ss_pred CceEEEEccCccceee-cCCCCC---------CCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCcee---eecc
Q 016751 132 RSLIYLWNPLIKKYMT-LPRPSL---------NPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWK---NIAY 198 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~-LP~~~~---------~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~---~~~~ 198 (383)
...+.|+|..|.+.+. ++.... .....++.+.+. +.+.++.......+.+++..+..-- .++.
T Consensus 247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~----~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~ 322 (543)
T 1nir_A 247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE----HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 322 (543)
T ss_dssp SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS----SSEEEEEETTTTEEEEEECTTSSSCEEEEEEC
T ss_pred CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC----CCEEEEEECCCCeEEEEEecCCCcceeEEecc
Confidence 5678888888866443 332110 001134444443 3344444433567888888764311 1110
Q ss_pred -CCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeE-eCC---CCCCCCCCCceEEEEeC-C
Q 016751 199 -GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMM---PYDLSTDDADKYLNVFD-G 272 (383)
Q Consensus 199 -~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~l---P~~~~~~~~~~~l~~~~-g 272 (383)
..|... ++.-+|...+.+... ...|.++|+.+.+... ++. | ... ....+..-+ |
T Consensus 323 ~~~~~~~---------~~spdg~~l~va~~~-------~~~v~v~D~~tg~l~~~i~~g~~p-h~g---~g~~~~~p~~g 382 (543)
T 1nir_A 323 APFLHDG---------GWDSSHRYFMTAANN-------SNKVAVIDSKDRRLSALVDVGKTP-HPG---RGANFVHPKYG 382 (543)
T ss_dssp CSSCCCE---------EECTTSCEEEEEEGG-------GTEEEEEETTTTEEEEEEECSSSB-CCT---TCEEEEETTTE
T ss_pred CcCccCc---------eECCCCCEEEEEecC-------CCeEEEEECCCCeEEEeeccCCCC-CCC---CCcccCCCCCc
Confidence 111111 223356643333321 2588899999887643 232 3 211 112232223 6
Q ss_pred eEEEEEecCCCCccEEEEEEeccCC-CCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEee---CC---ceEEEEEeCC
Q 016751 273 YLCVFATIPNNTFRSYELWVMKEYG-LTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR---HG---GYGLLVYNPH 345 (383)
Q Consensus 273 ~L~~v~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~---~~---~~~~~~yd~~ 345 (383)
.+++...... .++.+|-.+..+ .+..|..+.+++...-....+.+..+|+.+.+ .. .+ .+.+.+||.+
T Consensus 383 ~~~~s~~~~d---~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v--~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 383 PVWSTSHLGD---GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV--DTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EEEEEEBSSS---SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEE--CCTTCSSHHHHTCEEEEETT
T ss_pred cEEEeccCCC---ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEE--ecCCCCCcccCceEEEEECC
Confidence 6655544333 589999987532 23459988888864322334566777766665 31 01 1259999999
Q ss_pred CCeE
Q 016751 346 SDTF 349 (383)
Q Consensus 346 t~~~ 349 (383)
|.+.
T Consensus 458 ~~~~ 461 (543)
T 1nir_A 458 NLDA 461 (543)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=85.08 E-value=18 Score=31.35 Aligned_cols=198 Identities=13% Similarity=0.141 Sum_probs=101.1
Q ss_pred eEEEccCce-EEEeecCCCCceEEEEccCccce-e-ecCCCCCCCCcee-EEEeccCCCCCCeEEEEEEec--C--eEEE
Q 016751 114 DVVGSCNGV-LCFCSNGSDRSLIYLWNPLIKKY-M-TLPRPSLNPRYLG-FGVNSVSGHLDDFKVVTISVN--A--DAEV 185 (383)
Q Consensus 114 ~~~~s~~Gl-l~~~~~~~~~~~~~v~NP~t~~~-~-~LP~~~~~~~~~~-~g~d~~~~~~~~ykVv~~~~~--~--~~~v 185 (383)
.+..+-+|- +..... ....++++|+.+++. . .++.... ... +.+++. +.+ ++ +... . .+.+
T Consensus 44 ~~~~s~dg~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~s~d----g~~-l~-~~~~~~~~~~i~v 112 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSD--FCQTLVQIETQLEPPKVVAIQEGQS---SMADVDITPD----DQF-AV-TVTGLNHPFNMQS 112 (331)
T ss_dssp EEEECSSSCEEEEEES--TTCEEEEEECSSSSCEEEEEEECSS---CCCCEEECTT----SSE-EE-ECCCSSSSCEEEE
T ss_pred eEEEcCCCCEEEEEeC--CCCeEEEEECCCCceeEEecccCCC---CccceEECCC----CCE-EE-EecCCCCcccEEE
Confidence 444555664 555542 466899999998874 2 2222111 123 566654 223 33 3322 2 8999
Q ss_pred EEcCCCceeeeccCCCceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcE-EEEEECCCCe-e-eE--eCCCCCCC
Q 016751 186 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWL-IVSFDFAKEI-F-QT--VMMPYDLS 259 (383)
Q Consensus 186 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~-il~fD~~~~~-~-~~--i~lP~~~~ 259 (383)
|+..++.-...- ....... . . .+.-+|. +|...... .. +..||+.... . .. ..++ ...
T Consensus 113 ~d~~~~~~~~~~-~~~~~~~--~-~---~~spdg~~l~~~~~~~--------~~~i~~~~~~~~g~~~~~~~~~~~-~~~ 176 (331)
T 3u4y_A 113 YSFLKNKFISTI-PIPYDAV--G-I---AISPNGNGLILIDRSS--------ANTVRRFKIDADGVLFDTGQEFIS-GGT 176 (331)
T ss_dssp EETTTTEEEEEE-ECCTTEE--E-E---EECTTSSCEEEEEETT--------TTEEEEEEECTTCCEEEEEEEEEC-SSS
T ss_pred EECCCCCeEEEE-ECCCCcc--c-e---EECCCCCEEEEEecCC--------CceEEEEEECCCCcEeecCCcccc-CCC
Confidence 999887653322 1111111 0 0 2333665 66554432 24 7777765321 1 11 1112 211
Q ss_pred CCCCceEEEEe-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCe-EEEEEecCCCceeEEEEEeeCCc-EEEEEEeeCC
Q 016751 260 TDDADKYLNVF-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESW-TKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHG 335 (383)
Q Consensus 260 ~~~~~~~l~~~-~g~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~ 335 (383)
....++.. +|+ |++..... ..+.+|.++.. +. ..+..++... ....+.+..+|+ +++. . .+
T Consensus 177 ---~~~~~~~spdg~~l~v~~~~~----~~v~v~d~~~~----~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~--~-~~ 241 (331)
T 3u4y_A 177 ---RPFNITFTPDGNFAFVANLIG----NSIGILETQNP----ENITLLNAVGTNN-LPGTIVVSRDGSTVYVL--T-ES 241 (331)
T ss_dssp ---SEEEEEECTTSSEEEEEETTT----TEEEEEECSST----TSCEEEEEEECSS-CCCCEEECTTSSEEEEE--C-SS
T ss_pred ---CccceEECCCCCEEEEEeCCC----CeEEEEECCCC----cccceeeeccCCC-CCceEEECCCCCEEEEE--E-cC
Confidence 11233333 355 55555433 58899987642 22 2244454332 233466777887 5555 3 33
Q ss_pred ceEEEEEeCCCCeEEEEE
Q 016751 336 GYGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 336 ~~~~~~yd~~t~~~~~v~ 353 (383)
...+.++|+++++.+.+.
T Consensus 242 ~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 242 TVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp EEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCceeeec
Confidence 336999999999986663
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=84.67 E-value=23 Score=32.14 Aligned_cols=197 Identities=13% Similarity=0.016 Sum_probs=98.1
Q ss_pred cCceEEEeecCCCCceEEEEccCccceeecCCCCC---CCCc-eeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCcee
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSL---NPRY-LGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWK 194 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~---~~~~-~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~ 194 (383)
.+|.+++... ....+.++|+.+++.....+... .... ..+.+.+. ...++.......+.+|+.++++-.
T Consensus 132 ~~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 132 DNTRLAIPLL--EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-----NELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp SSSEEEEEBT--TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-----TEEEEEEGGGTEEEEEETTTCCEE
T ss_pred CCCeEEEEeC--CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-----CEEEEEECCCCEEEEEECCCceEE
Confidence 3677766653 45679999999988776544321 1111 34455433 222333222578999999876432
Q ss_pred eeccCCCceeeeccCcccceeEECce-EEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CC
Q 016751 195 NIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DG 272 (383)
Q Consensus 195 ~~~~~~p~~~~~~~~~~~~~v~~~G~-lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g 272 (383)
..-.......... .+.-+|. +|..+... ..|..+|+.+.+.... ++ ... ....+... +|
T Consensus 205 ~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~--------~~i~~~d~~~~~~~~~-~~-~~~---~~~~~~~~~~g 265 (433)
T 3bws_A 205 ATVDLTGKWSKIL------LYDPIRDLVYCSNWIS--------EDISVIDRKTKLEIRK-TD-KIG---LPRGLLLSKDG 265 (433)
T ss_dssp EEEECSSSSEEEE------EEETTTTEEEEEETTT--------TEEEEEETTTTEEEEE-CC-CCS---EEEEEEECTTS
T ss_pred EEEcCCCCCeeEE------EEcCCCCEEEEEecCC--------CcEEEEECCCCcEEEE-ec-CCC---CceEEEEcCCC
Confidence 2110111111000 1222444 44444232 4899999988765332 22 111 11223333 35
Q ss_pred -eEEEEEecCCC---CccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc-EEEEEEeeCCceEEEEEeCCCC
Q 016751 273 -YLCVFATIPNN---TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 273 -~L~~v~~~~~~---~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
.|++....... ....+.+|.++.. .....+.... ....+.+..+|+ +++. ...++ .+..||++++
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~------~~~~~~~~~~-~~~~~~~~~~g~~l~~~--~~~~~-~v~v~d~~~~ 335 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMDKE------KLIDTIGPPG-NKRHIVSGNTENKIYVS--DMCCS-KIEVYDLKEK 335 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETTTT------EEEEEEEEEE-CEEEEEECSSTTEEEEE--ETTTT-EEEEEETTTT
T ss_pred CEEEEEECCCCccccCCCeEEEEECCCC------cEEeeccCCC-CcceEEECCCCCEEEEE--ecCCC-EEEEEECCCC
Confidence 44444432210 1257888887641 1222222111 133355566674 5565 42344 5999999988
Q ss_pred eEEE
Q 016751 348 TFKC 351 (383)
Q Consensus 348 ~~~~ 351 (383)
+...
T Consensus 336 ~~~~ 339 (433)
T 3bws_A 336 KVQK 339 (433)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 7543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=84.55 E-value=17 Score=30.51 Aligned_cols=188 Identities=11% Similarity=0.009 Sum_probs=96.2
Q ss_pred CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCC-CceeeeccCCCceeeeccC
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRS-NSWKNIAYGFPRSIEINRS 209 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t-~~W~~~~~~~p~~~~~~~~ 209 (383)
....++++|+.+++...+..... ....+.+.|. + .+-++ . ....+.+++..+ +..+.+. ..+..... ..
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~--~v~~~~~spd---g-~~l~~-~-~~~~i~~~d~~~~~~~~~~~-~~~~~~~~-~~ 89 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPE--LFEAPNWSPD---G-KYLLL-N-SEGLLYRLSLAGDPSPEKVD-TGFATICN-ND 89 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESS--CCEEEEECTT---S-SEEEE-E-ETTEEEEEESSSCCSCEECC-CTTCCCBC-SC
T ss_pred cceeEEEEeCCCCceeeeccCCc--ceEeeEECCC---C-CEEEE-E-cCCeEEEEeCCCCCCceEec-cccccccc-cc
Confidence 56789999999988776644221 1245566654 3 33222 2 266899999988 7766554 22211110 10
Q ss_pred cccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CCe-EEEEEecCCCCccE
Q 016751 210 HINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGY-LCVFATIPNNTFRS 287 (383)
Q Consensus 210 ~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~-L~~v~~~~~~~~~~ 287 (383)
. ...-+|......... ......|..+|..+.....+... .. ...+.-. +|+ |++....+ ..
T Consensus 90 ~---~~spdg~~l~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~-~~-----~~~~~~spdg~~l~~~~~~~----~~ 152 (297)
T 2ojh_A 90 H---GISPDGALYAISDKV----EFGKSAIYLLPSTGGTPRLMTKN-LP-----SYWHGWSPDGKSFTYCGIRD----QV 152 (297)
T ss_dssp C---EECTTSSEEEEEECT----TTSSCEEEEEETTCCCCEECCSS-SS-----EEEEEECTTSSEEEEEEEET----TE
T ss_pred e---EECCCCCEEEEEEeC----CCCcceEEEEECCCCceEEeecC-CC-----ccceEECCCCCEEEEEECCC----Cc
Confidence 0 233356544444321 12346888899887765554333 21 1222322 354 44444444 47
Q ss_pred EEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCc-EEEEEEeeCCc-eEEEEEeCCCCeEEEE
Q 016751 288 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGG-YGLLVYNPHSDTFKCI 352 (383)
Q Consensus 288 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~-~~~~~yd~~t~~~~~v 352 (383)
+.||.++... .... .+.........+.+..+|. +++. ...++ ..++.++..++..+.+
T Consensus 153 ~~l~~~~~~~--~~~~---~~~~~~~~~~~~~~s~dg~~l~~~--~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 153 FDIYSMDIDS--GVET---RLTHGEGRNDGPDYSPDGRWIYFN--SSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp EEEEEEETTT--CCEE---ECCCSSSCEEEEEECTTSSEEEEE--ECTTSSCEEEEEETTSSCEEEC
T ss_pred eEEEEEECCC--Ccce---EcccCCCccccceECCCCCEEEEE--ecCCCCccEEEECCCCCCcEEE
Confidence 8999987532 2222 2221111234455556675 4444 21122 2577777777666554
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=83.76 E-value=21 Score=30.90 Aligned_cols=194 Identities=12% Similarity=0.086 Sum_probs=96.7
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceee-cCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKN 195 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~ 195 (383)
.+.+|-+++... .++.+.+||..+++... +..- ......+.+.|. . . .++.......+.+|+.+++ |..
T Consensus 63 ~~~~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~---~-~-~l~sgs~D~~v~lWd~~~~-~~~ 132 (304)
T 2ynn_A 63 FIARKNWIIVGS--DDFRIRVFNYNTGEKVVDFEAH--PDYIRSIAVHPT---K-P-YVLSGSDDLTVKLWNWENN-WAL 132 (304)
T ss_dssp EEGGGTEEEEEE--TTSEEEEEETTTCCEEEEEECC--SSCEEEEEECSS---S-S-EEEEEETTSCEEEEEGGGT-TEE
T ss_pred EeCCCCEEEEEC--CCCEEEEEECCCCcEEEEEeCC--CCcEEEEEEcCC---C-C-EEEEECCCCeEEEEECCCC-cch
Confidence 344555444443 67889999998876543 2211 111245666654 2 2 2333333668888888764 211
Q ss_pred eccCCCceeeeccCcccceeEE---CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeE-eCCCCCCCCCCCceEEEEe-
Q 016751 196 IAYGFPRSIEINRSHINSSVFL---NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVF- 270 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~~~~~~~~~l~~~- 270 (383)
.. ......... . ++.+ +|.+...+..+ ..|..+|+.+..-.. +... ... ....+...
T Consensus 133 ~~-~~~~h~~~v--~---~v~~~p~~~~~l~sgs~D--------~~v~iwd~~~~~~~~~~~~~-~~~---~v~~~~~~~ 194 (304)
T 2ynn_A 133 EQ-TFEGHEHFV--M---CVAFNPKDPSTFASGCLD--------RTVKVWSLGQSTPNFTLTTG-QER---GVNYVDYYP 194 (304)
T ss_dssp EE-EECCCCSCE--E---EEEECTTCTTEEEEEETT--------SEEEEEETTCSSCSEEEECC-CTT---CEEEEEECC
T ss_pred hh-hhcccCCcE--E---EEEECCCCCCEEEEEeCC--------CeEEEEECCCCCccceeccC-CcC---cEEEEEEEE
Confidence 11 010000000 0 2222 34444433333 588899986543221 1111 111 11122221
Q ss_pred --CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 271 --DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 271 --~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
++.+.+....+ ..+.+|-++. ...+..+.........+.+..++.+++. ...++ .+..+|.++.+
T Consensus 195 ~~~~~~l~s~s~D----~~i~iWd~~~------~~~~~~~~~h~~~v~~~~~~p~~~~l~s--~s~Dg-~i~iWd~~~~~ 261 (304)
T 2ynn_A 195 LPDKPYMITASDD----LTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTLPIIIS--GSEDG-TLKIWNSSTYK 261 (304)
T ss_dssp STTCCEEEEEETT----SEEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSEEEE--EETTS-CEEEEETTTCC
T ss_pred cCCCCEEEEEcCC----CeEEEEeCCC------CccceeeCCCCCCEEEEEECCCCCEEEE--EcCCC-eEEEEECCCCc
Confidence 34444444444 5999998864 1334444432213455666777777776 43455 49999999987
Q ss_pred EEE
Q 016751 349 FKC 351 (383)
Q Consensus 349 ~~~ 351 (383)
...
T Consensus 262 ~~~ 264 (304)
T 2ynn_A 262 VEK 264 (304)
T ss_dssp EEE
T ss_pred eee
Confidence 654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.76 E-value=23 Score=31.49 Aligned_cols=192 Identities=8% Similarity=0.007 Sum_probs=88.2
Q ss_pred CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc--eeeecc-------CCC
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS--WKNIAY-------GFP 201 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~--W~~~~~-------~~p 201 (383)
.++.+.++|..+++....-... ......+.+.|. +.+.++.......+.+|+.+++. ...... ...
T Consensus 164 ~~~~v~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~----~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 238 (408)
T 4a11_B 164 RGPKVQLCDLKSGSCSHILQGH-RQEILAVSWSPR----YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238 (408)
T ss_dssp SSSSEEEEESSSSCCCEEECCC-CSCEEEEEECSS----CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTT
T ss_pred CCCeEEEEeCCCcceeeeecCC-CCcEEEEEECCC----CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeec
Confidence 3556777777665433211111 011245666654 33434444436688999997653 222110 000
Q ss_pred ceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCC--CCCCCCCceEEEEeCCeEEEE
Q 016751 202 RSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPY--DLSTDDADKYLNVFDGYLCVF 277 (383)
Q Consensus 202 ~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~--~~~~~~~~~~l~~~~g~L~~v 277 (383)
.....+... -.++.+ +|.....+... ..|..||+.+..-....... ...............+...++
T Consensus 239 ~~~~~~~~~-v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 239 SANTAHNGK-VNGLCFTSDGLHLLTVGTD--------NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp TSSCSCSSC-EEEEEECTTSSEEEEEETT--------SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred cccccccCc-eeEEEEcCCCCEEEEecCC--------CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence 000000000 002222 55544444433 47999999876543321110 000111112222222333333
Q ss_pred EecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 278 ATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 278 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
...+ ..+.+|.+.. ...+..+.........+++..+|.+++. ...++ .+..||+++.+.
T Consensus 310 ~~~~----~~i~v~d~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg-~i~iw~~~~~~~ 368 (408)
T 4a11_B 310 VPYG----STIAVYTVYS------GEQITMLKGHYKTVDCCVFQSNFQELYS--GSRDC-NILAWVPSLYEP 368 (408)
T ss_dssp EEET----TEEEEEETTT------CCEEEEECCCSSCEEEEEEETTTTEEEE--EETTS-CEEEEEECC---
T ss_pred EecC----CEEEEEECcC------CcceeeeccCCCeEEEEEEcCCCCEEEE--ECCCC-eEEEEeCCCCCc
Confidence 3333 4888998865 1233444322213555677778877776 43455 499999998764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=83.31 E-value=23 Score=31.16 Aligned_cols=194 Identities=10% Similarity=0.080 Sum_probs=97.3
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCc--ee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNS--WK 194 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~--W~ 194 (383)
-+.+|-+++... .++.+.|||..+++....-+... .....+.+.|. + . .++.......+.+|+..++. .+
T Consensus 63 ~s~d~~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~-~~v~~~~~s~~---~-~-~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 63 WGTDSRLLLSAS--QDGKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPS---G-N-YVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp ECTTSSEEEEEE--TTTEEEEEETTTCCEEEEEECSS-SCEEEEEECTT---S-S-EEEEEETTCEEEEEETTTCSBSCE
T ss_pred ECCCCCEEEEEe--CCCcEEEEECCCCCcceEeecCC-ccEEEEEECCC---C-C-EEEEEeCCCeEEEEECccCCCcce
Confidence 345565555543 67889999988766443211111 11244555554 2 2 23333336688999987643 22
Q ss_pred eeccCCCceeeeccCcccce-eEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CC
Q 016751 195 NIAYGFPRSIEINRSHINSS-VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DG 272 (383)
Q Consensus 195 ~~~~~~p~~~~~~~~~~~~~-v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g 272 (383)
... ... .+.....+. ..-+|.+.- +.. ...|..+|+.+..-... +. .+.. ....+... +|
T Consensus 135 ~~~-~~~----~h~~~v~~~~~~~~~~l~s-~s~--------d~~i~~wd~~~~~~~~~-~~-~h~~--~v~~~~~~~~~ 196 (340)
T 1got_B 135 VSR-ELA----GHTGYLSCCRFLDDNQIVT-SSG--------DTTCALWDIETGQQTTT-FT-GHTG--DVMSLSLAPDT 196 (340)
T ss_dssp EEE-EEE----CCSSCEEEEEEEETTEEEE-EET--------TSCEEEEETTTTEEEEE-EC-CCSS--CEEEEEECTTS
T ss_pred eEE-Eec----CCCccEEEEEECCCCcEEE-EEC--------CCcEEEEECCCCcEEEE-Ec-CCCC--ceEEEEECCCC
Confidence 111 110 000000001 122444332 222 24788999987764332 11 1110 12233333 35
Q ss_pred eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 273 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 273 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
++.+.+..+ ..+.+|.+... .....+.........+++..+|..++. ...++ .+..||+++++.
T Consensus 197 ~~l~sg~~d----~~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~d~-~v~iwd~~~~~~ 260 (340)
T 1got_B 197 RLFVSGACD----ASAKLWDVREG------MCRQTFTGHESDINAICFFPNGNAFAT--GSDDA-TCRLFDLRADQE 260 (340)
T ss_dssp SEEEEEETT----SCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSSEEEE--EETTS-CEEEEETTTTEE
T ss_pred CEEEEEeCC----CcEEEEECCCC------eeEEEEcCCcCCEEEEEEcCCCCEEEE--EcCCC-cEEEEECCCCcE
Confidence 665555555 48999988652 222333322113555667777777776 43455 489999988754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=82.85 E-value=28 Score=31.71 Aligned_cols=190 Identities=9% Similarity=-0.019 Sum_probs=95.7
Q ss_pred CceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCceeeecc
Q 016751 120 NGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNSWKNIAY 198 (383)
Q Consensus 120 ~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~W~~~~~ 198 (383)
.+.|++.. ...+...++..++...+-+.. ....++.+|+. .+ +++.... ...+..++..+...+.+.
T Consensus 87 ~~~l~~~~----~~~I~~i~~~~~~~~~~~~~~--~~~~gl~~d~~---~~--~ly~~D~~~~~I~r~~~~g~~~~~~~- 154 (386)
T 3v65_B 87 EPVLLFAN----RIDIRQVLPHRSEYTLLLNNL--ENAIALDFHHR---RE--LVFWSDVTLDRILRANLNGSNVEEVV- 154 (386)
T ss_dssp CCEEEEEC----BSCEEEECTTSCCCEEEECSC--SCEEEEEEETT---TT--EEEEEETTTTEEEEEETTSCCEEEEE-
T ss_pred cceeEeec----CccceeeccCCCcEEEEecCC--CccEEEEEecC---CC--eEEEEeCCCCcEEEEecCCCCcEEEE-
Confidence 34455443 345667777665544432211 12367778865 33 3333332 456777887776555443
Q ss_pred CCCceeeeccCcccceeEE---CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe--CCe
Q 016751 199 GFPRSIEINRSHINSSVFL---NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF--DGY 273 (383)
Q Consensus 199 ~~p~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~ 273 (383)
..... ... ++.+ +|.|||..... ..|..+|+....-..+. . .... ....+++. +|.
T Consensus 155 ~~~~~----~p~---glavd~~~g~lY~~d~~~--------~~I~~~~~dg~~~~~l~-~-~~l~--~P~giavdp~~g~ 215 (386)
T 3v65_B 155 STGLE----SPG---GLAVDWVHDKLYWTDSGT--------SRIEVANLDGAHRKVLL-W-QSLE--KPRAIALHPMEGT 215 (386)
T ss_dssp CSSCS----CCC---CEEEETTTTEEEEEETTT--------TEEEECBTTSCSCEEEE-C-SSCS--CEEEEEEETTTTE
T ss_pred eCCCC----Ccc---EEEEEeCCCeEEEEcCCC--------CeEEEEeCCCCceEEee-c-CCCC--CCcEEEEEcCCCe
Confidence 11110 111 3333 68999987654 58999998765433331 1 1111 12334554 578
Q ss_pred EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEe-eCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 016751 274 LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFT-ERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 274 L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~-~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v 352 (383)
||+..... .-.|++.+..+. .. ..+..-.+. ...-+++. .++.||+. ..... .+..+|+.....+.+
T Consensus 216 ly~td~~~-----~~~I~r~~~dG~-~~-~~~~~~~~~--~PnGlavd~~~~~lY~a--D~~~~-~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 216 IYWTDWGN-----TPRIEASSMDGS-GR-RIIADTHLF--WPNGLTIDYAGRRMYWV--DAKHH-VIERANLDGSHRKAV 283 (386)
T ss_dssp EEEEECSS-----SCEEEEEETTSC-SC-EEEECSSCS--CEEEEEEEGGGTEEEEE--ETTTT-EEEEECTTSCSCEEE
T ss_pred EEEeccCC-----CCEEEEEeCCCC-Cc-EEEEECCCC--CeeeEEEeCCCCEEEEE--ECCCC-EEEEEeCCCCeeEEE
Confidence 88876433 235666654332 11 111111111 12234444 45678887 42233 588898876544433
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.35 E-value=30 Score=31.80 Aligned_cols=99 Identities=3% Similarity=-0.071 Sum_probs=51.5
Q ss_pred cEEEEEECCCCeeeE--eCCCCCCCCCCCceEEEEe-C---CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecC
Q 016751 237 WLIVSFDFAKEIFQT--VMMPYDLSTDDADKYLNVF-D---GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEK 310 (383)
Q Consensus 237 ~~il~fD~~~~~~~~--i~lP~~~~~~~~~~~l~~~-~---g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 310 (383)
..+..+|+.+..... +... ..... ....+.-. + |++.+....+ ..+.+|.+... .-........
T Consensus 171 g~v~~~~~~~~~~~~~~~~~~-~~h~~-~v~~~~~sp~~~~~~~l~s~~~d----~~i~vwd~~~~----~~~~~~~~~h 240 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKFTQEPI-LGHVS-MLTDVHLIKDSDGHQFIITSDRD----EHIKISHYPQC----FIVDKWLFGH 240 (450)
T ss_dssp SEEEEEETTSCCCSSCCCCCS-EECSS-CEEEEEEEECTTSCEEEEEEETT----SCEEEEEESCT----TCEEEECCCC
T ss_pred CcEEEEecCCcccccccceee-ecccC-ceEEEEEcCCCCCCcEEEEEcCC----CcEEEEECCCC----ceeeeeecCC
Confidence 478888887654331 1010 10010 11223322 3 5555555544 58999998752 1121111112
Q ss_pred CCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 311 PQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 311 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
.. ....+++. +|..++. ...++ .+.+||+++++..
T Consensus 241 ~~-~v~~~~~s-d~~~l~s--~~~d~-~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 241 KH-FVSSICCG-KDYLLLS--AGGDD-KIFAWDWKTGKNL 275 (450)
T ss_dssp SS-CEEEEEEC-STTEEEE--EESSS-EEEEEETTTCCEE
T ss_pred CC-ceEEEEEC-CCCEEEE--EeCCC-eEEEEECCCCcEe
Confidence 11 34556666 7777766 43455 4999999998743
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=81.97 E-value=24 Score=30.26 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=103.6
Q ss_pred EEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCceeeeccCCC
Q 016751 123 LCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNSWKNIAYGFP 201 (383)
Q Consensus 123 l~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~W~~~~~~~p 201 (383)
|+..+. ....++++||.++ ...+..+.. ...++.+++. +. ++.... ...+.+|+..+++.+.+. ...
T Consensus 42 l~~~~~--~~~~i~~~~~~~~-~~~~~~~~~--~~~~l~~~~d---g~---l~v~~~~~~~i~~~d~~~g~~~~~~-~~~ 109 (296)
T 3e5z_A 42 VIFSDV--RQNRTWAWSDDGQ-LSPEMHPSH--HQNGHCLNKQ---GH---LIACSHGLRRLERQREPGGEWESIA-DSF 109 (296)
T ss_dssp EEEEEG--GGTEEEEEETTSC-EEEEESSCS--SEEEEEECTT---CC---EEEEETTTTEEEEECSTTCCEEEEE-CEE
T ss_pred EEEEeC--CCCEEEEEECCCC-eEEEECCCC--CcceeeECCC---Cc---EEEEecCCCeEEEEcCCCCcEEEEe-ecc
Confidence 444442 4678999999988 555543221 1256677764 32 222222 467899999888877654 211
Q ss_pred ceeeeccCcccceeEECceEEEEEeeccC---------CCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-C
Q 016751 202 RSIEINRSHINSSVFLNGSVHWCARFSCY---------HDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-D 271 (383)
Q Consensus 202 ~~~~~~~~~~~~~v~~~G~lYw~~~~~~~---------~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~ 271 (383)
......... ...+.-+|.+|+....... ........|..+|.. .+...+.-. .. ....++.. +
T Consensus 110 ~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~--~~~gi~~s~d 182 (296)
T 3e5z_A 110 EGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD---RV--KPNGLAFLPS 182 (296)
T ss_dssp TTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC---CS--SEEEEEECTT
T ss_pred CCCCCCCCC-CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC---CC--CCccEEECCC
Confidence 111111111 0023346888775321000 000112489999987 555544211 10 11234433 4
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCe-EEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 272 GYLCVFATIPNNTFRSYELWVMKEYGLTESW-TKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 272 g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
|++. +..... ..+.+|.++.. ... .....+........-+++..+|.+++. . +. .+..||++.+.+.
T Consensus 183 g~~l-v~~~~~---~~i~~~~~~~~---g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~--~~-~v~~~~~~g~~~~ 250 (296)
T 3e5z_A 183 GNLL-VSDTGD---NATHRYCLNAR---GETEYQGVHFTVEPGKTDGLRVDAGGLIWAS--A--GD-GVHVLTPDGDELG 250 (296)
T ss_dssp SCEE-EEETTT---TEEEEEEECSS---SCEEEEEEEECCSSSCCCSEEEBTTSCEEEE--E--TT-EEEEECTTSCEEE
T ss_pred CCEE-EEeCCC---CeEEEEEECCC---CcCcCCCeEeeCCCCCCCeEEECCCCCEEEE--c--CC-eEEEECCCCCEEE
Confidence 6665 444333 47777777632 334 222222111101233566778899888 4 44 3999999977777
Q ss_pred EEEEe
Q 016751 351 CIGVH 355 (383)
Q Consensus 351 ~v~~~ 355 (383)
.+...
T Consensus 251 ~~~~~ 255 (296)
T 3e5z_A 251 RVLTP 255 (296)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 66543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.90 E-value=47 Score=33.69 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=84.2
Q ss_pred eeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEE---CceEEEEEeeccCCCC
Q 016751 158 LGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFL---NGSVHWCARFSCYHDN 233 (383)
Q Consensus 158 ~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~---~G~lYw~~~~~~~~~~ 233 (383)
.++.+|.. ++ +|++... ...++++++....-+.+. ..... ... ++.+ +|.|||.....
T Consensus 474 ~GLAvD~~---~~--~LY~tD~~~~~I~v~~ldG~~~~~l~-~~~l~----~P~---gIaVDp~~g~LYwtD~g~----- 535 (791)
T 3m0c_C 474 DGLAVDWI---HS--NIYWTDSVLGTVSVADTKGVKRKTLF-RENGS----KPR---AIVVDPVHGFMYWTDWGT----- 535 (791)
T ss_dssp CEEEEETT---TT--EEEEEETTTTEEEEEETTSSSEEEEE-ECTTC----CEE---EEEEETTTTEEEEEECSS-----
T ss_pred ceeeeeec---CC--cEEEEecCCCeEEEEeCCCCeEEEEE-eCCCC----Ccc---eEEEecCCCCEEEecCCC-----
Confidence 56777765 43 3443333 557888888765554443 11110 111 4555 58999987532
Q ss_pred CCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe--CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCC
Q 016751 234 SCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF--DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP 311 (383)
Q Consensus 234 ~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 311 (383)
...|..+++....-..+.- .... .-..|+.. +|+||++..... .||+.+-.+. .....+ .-..
T Consensus 536 --~~~I~~~~~dG~~~~~lv~--~~l~--~P~GLavD~~~~~LYwaD~~~~------~I~~~d~dG~-~~~~v~-~~~~- 600 (791)
T 3m0c_C 536 --PAKIKKGGLNGVDIYSLVT--ENIQ--WPNGITLDLLSGRLYWVDSKLH------SISSIDVNGG-NRKTIL-EDEK- 600 (791)
T ss_dssp --SCEEEEEETTSCCEEEEEC--SSCS--CEEEEEEETTTTEEEEEETTTT------EEEEEETTSC-SCEEEE-ECTT-
T ss_pred --CCeEEEEecCCCceEEEEe--CCCC--CceEEEEecCCCeEEEEeCCCC------cEEEEecCCC-ceEEEe-cCCC-
Confidence 2489999997655444311 1110 12335544 689999875432 5666654332 222222 1111
Q ss_pred CceeEEEEEe-eCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 016751 312 QRIWWPLGFT-ERGKIFIRGECRHGGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 312 ~~~~~~~~~~-~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~ 351 (383)
. ...|++++ .++.||+. . .....|..+|..+++-..
T Consensus 601 ~-l~~P~glav~~~~lYwt--D-~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 601 R-LAHPFSLAVFEDKVFWT--D-IINEAIFSANRLTGSDVN 637 (791)
T ss_dssp T-TSSEEEEEEETTEEEEE--E-TTTTEEEEEETTTCCCCE
T ss_pred c-cCCCCEEEEeCCEEEEE--E-CCCCEEEEEeCCCCcceE
Confidence 1 23455554 35578887 5 332359999988775433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=81.71 E-value=29 Score=31.20 Aligned_cols=207 Identities=8% Similarity=-0.029 Sum_probs=103.1
Q ss_pred EccCc-eEEEeecCCCCceEEEEccCccceee-cCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCcee
Q 016751 117 GSCNG-VLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWK 194 (383)
Q Consensus 117 ~s~~G-ll~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~ 194 (383)
-+.+| .+++... .++.+.|||..+++... +...........+.+.+. +. .++.......+.+|+.+++.-.
T Consensus 139 ~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~--~l~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 139 WHPTAQNVLLSAG--CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD---GA--LICTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp ECSSBTTEEEEEE--TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT---SS--CEEEEETTSEEEEEETTTTEEE
T ss_pred ECcCCCCEEEEEc--CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC---CC--EEEEEecCCcEEEEeCCCCcee
Confidence 34444 3443332 57789999998876553 321111122255666654 22 2333333668999999886432
Q ss_pred eeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee--eEeCCCCCCCCCCCceEEEEe-C
Q 016751 195 NIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF--QTVMMPYDLSTDDADKYLNVF-D 271 (383)
Q Consensus 195 ~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~--~~i~lP~~~~~~~~~~~l~~~-~ 271 (383)
..-......... ... ...-+|.+...+.. ......|..||+.+..- ....++ ... ....+.-. +
T Consensus 212 ~~~~~~~~~~~~-~~~---~~~~~~~~l~~g~~-----~~~d~~i~iwd~~~~~~~~~~~~~~-~~~---~v~~~~~s~~ 278 (402)
T 2aq5_A 212 AEKDRPHEGTRP-VHA---VFVSEGKILTTGFS-----RMSERQVALWDTKHLEEPLSLQELD-TSS---GVLLPFFDPD 278 (402)
T ss_dssp EEEECSSCSSSC-CEE---EECSTTEEEEEEEC-----TTCCEEEEEEETTBCSSCSEEEECC-CCS---SCEEEEEETT
T ss_pred eeeccCCCCCcc-eEE---EEcCCCcEEEEecc-----CCCCceEEEEcCccccCCceEEecc-CCC---ceeEEEEcCC
Confidence 111000000000 000 12235665554411 01235899999986432 222333 211 12233333 3
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCe-EEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 272 GYLCVFATIPNNTFRSYELWVMKEYGLTESW-TKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 272 g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
|+..++.+..+ ..+.+|.++.. ..+ .......... ....+++..++.+++. .++ .+..|++.+++.+
T Consensus 279 ~~~l~~~g~~d---g~i~i~d~~~~---~~~~~~l~~~~~~~-~v~~~~~sp~~~~~~s----~~~-~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 279 TNIVYLCGKGD---SSIRYFEITSE---APFLHYLSMFSSKE-SQRGMGYMPKRGLEVN----KCE-IARFYKLHERKCE 346 (402)
T ss_dssp TTEEEEEETTC---SCEEEEEECSS---TTCEEEEEEECCSS-CCSEEEECCGGGSCGG----GTE-EEEEEEEETTEEE
T ss_pred CCEEEEEEcCC---CeEEEEEecCC---CcceEeecccccCC-cccceEEeccccccee----cce-eEEEEEcCCCcEE
Confidence 55544444333 58999999863 222 2233333211 2444566666665544 344 4889999999888
Q ss_pred EEEEe
Q 016751 351 CIGVH 355 (383)
Q Consensus 351 ~v~~~ 355 (383)
.+.+.
T Consensus 347 ~i~~~ 351 (402)
T 2aq5_A 347 PIAMT 351 (402)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.62 E-value=26 Score=30.51 Aligned_cols=198 Identities=10% Similarity=0.033 Sum_probs=96.6
Q ss_pred CceEEEeecCCCCceEEEEccCccc--eeecCCCCCCC--CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceee
Q 016751 120 NGVLCFCSNGSDRSLIYLWNPLIKK--YMTLPRPSLNP--RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKN 195 (383)
Q Consensus 120 ~Gll~~~~~~~~~~~~~v~NP~t~~--~~~LP~~~~~~--~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~ 195 (383)
+|-.++... .++.+.+||..+++ ...+....... ....+.+.+.-. .+.-.++.......+.+|+.+++.=..
T Consensus 128 ~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~ 204 (357)
T 3i2n_A 128 GAPEIVTGS--RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN-QEERVVCAGYDNGDIKLFDLRNMALRW 204 (357)
T ss_dssp CCCEEEEEE--TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred CccEEEEEe--CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC-CCCCEEEEEccCCeEEEEECccCceee
Confidence 444444432 57789999988865 33343322211 223344322100 112233333335689999998875322
Q ss_pred eccCCCceeeeccCcccceeEE-----CceEEEEEeeccCCCCCCCcEEEEEECCCCeee----EeCCCCCCCCCCCceE
Q 016751 196 IAYGFPRSIEINRSHINSSVFL-----NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ----TVMMPYDLSTDDADKY 266 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~-----~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~----~i~lP~~~~~~~~~~~ 266 (383)
.. ....... ++.+ +|.....+... ..|..||+.+..-. ...+. ... .....
T Consensus 205 ~~-~~~~~v~--------~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~-~~~--~~v~~ 264 (357)
T 3i2n_A 205 ET-NIKNGVC--------SLEFDRKDISMNKLVATSLE--------GKFHVFDMRTQHPTKGFASVSEK-AHK--STVWQ 264 (357)
T ss_dssp EE-ECSSCEE--------EEEESCSSSSCCEEEEEEST--------TEEEEEEEEEEETTTEEEEEEEE-CCS--SCEEE
T ss_pred ec-CCCCceE--------EEEcCCCCCCCCEEEEECCC--------CeEEEEeCcCCCcccceeeeccC-CCc--CCEEE
Confidence 22 1111111 2222 45555555443 47888888754321 11111 111 11223
Q ss_pred EEEeC-Ce-EEEEEecCCCCccEEEEEEeccCCC-------------CCCeEEEEEecCCCceeEEEEEeeCCcEEE-EE
Q 016751 267 LNVFD-GY-LCVFATIPNNTFRSYELWVMKEYGL-------------TESWTKLYTIEKPQRIWWPLGFTERGKIFI-RG 330 (383)
Q Consensus 267 l~~~~-g~-L~~v~~~~~~~~~~l~iW~l~~~~~-------------~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~ 330 (383)
+.-.. |. +.+....+ ..+.+|.++.... ...+..+..+.........+.+..+|..++ .
T Consensus 265 ~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s- 339 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGA----GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVC- 339 (357)
T ss_dssp EEEETTEEEEEEEEETT----SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEE-
T ss_pred EEECCCCCcEEEEEeCC----CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEE-
Confidence 44443 55 44444444 5999999975321 123455555553322345566667775554 4
Q ss_pred EeeCCceEEEEEeCCCC
Q 016751 331 ECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 331 ~~~~~~~~~~~yd~~t~ 347 (383)
...++ .+.+||+.+.
T Consensus 340 -~~~d~-~i~iw~~~~~ 354 (357)
T 3i2n_A 340 -SSFDQ-TVRVLIVTKL 354 (357)
T ss_dssp -EETTS-EEEEEEECC-
T ss_pred -ecCCC-cEEEEECCCc
Confidence 32455 4999998764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=81.27 E-value=28 Score=30.63 Aligned_cols=205 Identities=9% Similarity=-0.028 Sum_probs=100.5
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
...+|.+++.+. ....++++||.+++...++.+. ...++.+++. + .+ ++. . ...+.+|+..+++.+.+
T Consensus 57 ~~~~~~l~~~d~--~~~~i~~~d~~~~~~~~~~~~~---~v~~i~~~~d---g-~l-~v~-~-~~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 57 DPASGTAWWFNI--LERELHELHLASGRKTVHALPF---MGSALAKISD---S-KQ-LIA-S-DDGLFLRDTATGVLTLH 124 (326)
T ss_dssp ETTTTEEEEEEG--GGTEEEEEETTTTEEEEEECSS---CEEEEEEEET---T-EE-EEE-E-TTEEEEEETTTCCEEEE
T ss_pred eCCCCEEEEEEC--CCCEEEEEECCCCcEEEEECCC---cceEEEEeCC---C-eE-EEE-E-CCCEEEEECCCCcEEEE
Confidence 344566655553 4568999999988766553321 2245566654 2 22 222 2 45688999988888766
Q ss_pred ccCCCcee--eeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CC-
Q 016751 197 AYGFPRSI--EINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DG- 272 (383)
Q Consensus 197 ~~~~p~~~--~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g- 272 (383)
. ..+... .....- .+.-+|.+|+..... ........|..+| +.+...+.-. .. ....++.. +|
T Consensus 125 ~-~~~~~~~~~~~~~i---~~d~~G~l~v~~~~~--~~~~~~~~l~~~~--~g~~~~~~~~--~~---~~~~i~~s~dg~ 191 (326)
T 2ghs_A 125 A-ELESDLPGNRSNDG---RMHPSGALWIGTMGR--KAETGAGSIYHVA--KGKVTKLFAD--IS---IPNSICFSPDGT 191 (326)
T ss_dssp E-CSSTTCTTEEEEEE---EECTTSCEEEEEEET--TCCTTCEEEEEEE--TTEEEEEEEE--ES---SEEEEEECTTSC
T ss_pred e-eCCCCCCCCCCCCE---EECCCCCEEEEeCCC--cCCCCceEEEEEe--CCcEEEeeCC--Cc---ccCCeEEcCCCC
Confidence 4 322110 000100 233368876543321 0011235799999 4665543111 00 11223333 35
Q ss_pred eEEEEEecCCCCccEEEEEEec-cCC-C-CCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 273 YLCVFATIPNNTFRSYELWVMK-EYG-L-TESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 273 ~L~~v~~~~~~~~~~l~iW~l~-~~~-~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
.|++..... ..+.+|.++ +.+ . ... .....+........-+.+..+|.+++. ...++ .+..||++.+..
T Consensus 192 ~lyv~~~~~----~~I~~~d~~~~~Gl~~~~~-~~~~~~~~~~~~p~gi~~d~~G~lwva--~~~~~-~v~~~d~~g~~~ 263 (326)
T 2ghs_A 192 TGYFVDTKV----NRLMRVPLDARTGLPTGKA-EVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEG-AVDRYDTDGNHI 263 (326)
T ss_dssp EEEEEETTT----CEEEEEEBCTTTCCBSSCC-EEEEECTTSSSEEEEEEECTTSCEEEE--EETTT-EEEEECTTCCEE
T ss_pred EEEEEECCC----CEEEEEEcccccCCcccCc-eEEEECCCCCCCCCeeEECCCCCEEEE--EeCCC-EEEEECCCCCEE
Confidence 466654332 355555543 111 0 000 111222211112233445567888887 42234 499999976666
Q ss_pred EEEEE
Q 016751 350 KCIGV 354 (383)
Q Consensus 350 ~~v~~ 354 (383)
+.+..
T Consensus 264 ~~i~~ 268 (326)
T 2ghs_A 264 ARYEV 268 (326)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66644
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.98 E-value=29 Score=30.64 Aligned_cols=145 Identities=12% Similarity=0.196 Sum_probs=76.5
Q ss_pred cCeEEEEEcCCCceeeecc---CCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCC
Q 016751 180 NADAEVYSLRSNSWKNIAY---GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP 255 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~---~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP 255 (383)
...+.+|+..++.|..... ......... ...-+|.....+..+ ..+..+|..++.+..+ .+.
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~------~~sp~g~~l~s~s~D--------~~v~iw~~~~~~~~~~~~~~ 102 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKV------AWSPCGNYLASASFD--------ATTCIWKKNQDDFECVTTLE 102 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSCEEEE------EECTTSSEEEEEETT--------SCEEEEEECCC-EEEEEEEC
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCcEEEE------EECCCCCEEEEEECC--------CcEEEEEccCCCeEEEEEcc
Confidence 5678999998888753320 011111100 111245544443332 4677888887766544 333
Q ss_pred CCCCCCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeC
Q 016751 256 YDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH 334 (383)
Q Consensus 256 ~~~~~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~ 334 (383)
.+.. ....+.-. +|++.+....+ ..+.+|.++.. ..+..+..+.........+.+..++.+++. ...
T Consensus 103 -~h~~--~v~~v~~sp~~~~l~s~s~D----~~v~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s--~s~ 170 (345)
T 3fm0_A 103 -GHEN--EVKSVAWAPSGNLLATCSRD----KSVWVWEVDEE---DEYECVSVLNSHTQDVKHVVWHPSQELLAS--ASY 170 (345)
T ss_dssp -CCSS--CEEEEEECTTSSEEEEEETT----SCEEEEEECTT---SCEEEEEEECCCCSCEEEEEECSSSSCEEE--EET
T ss_pred -CCCC--CceEEEEeCCCCEEEEEECC----CeEEEEECCCC---CCeEEEEEecCcCCCeEEEEECCCCCEEEE--EeC
Confidence 2211 12233333 36665555555 48999999752 334544444432212445566667766665 324
Q ss_pred CceEEEEEeCCCCeEEE
Q 016751 335 GGYGLLVYNPHSDTFKC 351 (383)
Q Consensus 335 ~~~~~~~yd~~t~~~~~ 351 (383)
++ .+..||.+++++..
T Consensus 171 d~-~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 171 DD-TVKLYREEEDDWVC 186 (345)
T ss_dssp TS-CEEEEEEETTEEEE
T ss_pred CC-cEEEEEecCCCEEE
Confidence 55 38888888877654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.89 E-value=31 Score=30.85 Aligned_cols=195 Identities=9% Similarity=0.043 Sum_probs=96.2
Q ss_pred EEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceee
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKN 195 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~ 195 (383)
.-+.+|-+++... .++.+.++|...+....+.... .....+.+.+. . . .++.......+.+|+..++.-..
T Consensus 115 ~~s~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~--~~v~~~~~~~~---~-~-~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 115 AWSHDGNSIVTGV--ENGELRLWNKTGALLNVLNFHR--APIVSVKWNKD---G-T-HIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp EECTTSSEEEEEE--TTSCEEEEETTSCEEEEECCCC--SCEEEEEECTT---S-S-EEEEEETTCCEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEe--CCCeEEEEeCCCCeeeeccCCC--ccEEEEEECCC---C-C-EEEEEecCCeEEEEECCCCcEEE
Confidence 3445565444432 5678999994444444444221 11245566553 2 2 33333336688999998775432
Q ss_pred eccCCCceeee-------------ccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeE-eCCCCCCCCC
Q 016751 196 IAYGFPRSIEI-------------NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTD 261 (383)
Q Consensus 196 ~~~~~p~~~~~-------------~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~~~~ 261 (383)
.- ..+..... .... ...-+|.+ ..+... ..|..||+.+..... +... . .
T Consensus 186 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~--------g~i~~~d~~~~~~~~~~~~~-~-~-- 248 (425)
T 1r5m_A 186 HF-ELKETGGSSINAENHSGDGSLGVDV---EWVDDDKF-VIPGPK--------GAIFVYQITEKTPTGKLIGH-H-G-- 248 (425)
T ss_dssp EE-CCC---------------CCCBSCC---EEEETTEE-EEECGG--------GCEEEEETTCSSCSEEECCC-S-S--
T ss_pred Ee-eccccCccceeeccccCCcceeeEE---EEcCCCEE-EEEcCC--------CeEEEEEcCCCceeeeeccC-C-C--
Confidence 22 11111000 1110 22334443 333333 479999998764422 2211 1 1
Q ss_pred CCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEE
Q 016751 262 DADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLL 340 (383)
Q Consensus 262 ~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 340 (383)
....+... +|++.++...+ ..+.+|.+.... ....+.........+.+..++ .++. ...++ .+.
T Consensus 249 -~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d~-~i~ 313 (425)
T 1r5m_A 249 -PISVLEFNDTNKLLLSASDD----GTLRIWHGGNGN------SQNCFYGHSQSIVSASWVGDD-KVIS--CSMDG-SVR 313 (425)
T ss_dssp -CEEEEEEETTTTEEEEEETT----SCEEEECSSSBS------CSEEECCCSSCEEEEEEETTT-EEEE--EETTS-EEE
T ss_pred -ceEEEEECCCCCEEEEEcCC----CEEEEEECCCCc------cceEecCCCccEEEEEECCCC-EEEE--EeCCC-cEE
Confidence 12233433 45555555544 489999887521 112222111124455666667 4444 32455 499
Q ss_pred EEeCCCCeEEE
Q 016751 341 VYNPHSDTFKC 351 (383)
Q Consensus 341 ~yd~~t~~~~~ 351 (383)
.||+++++...
T Consensus 314 i~d~~~~~~~~ 324 (425)
T 1r5m_A 314 LWSLKQNTLLA 324 (425)
T ss_dssp EEETTTTEEEE
T ss_pred EEECCCCcEeE
Confidence 99999887543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=80.89 E-value=33 Score=31.22 Aligned_cols=196 Identities=11% Similarity=0.107 Sum_probs=96.1
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCcee-e
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWK-N 195 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~-~ 195 (383)
-+.+|-+++... .++.+.|||..+.+....-... ......+.+.|. + + .++.......+.+|+.+++.-. .
T Consensus 158 ~~~~~~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h-~~~V~~v~~~p~---~-~-~l~s~s~D~~i~~wd~~~~~~~~~ 229 (410)
T 1vyh_C 158 FDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGH-DHNVSSVSIMPN---G-D-HIVSASRDKTIKMWEVQTGYCVKT 229 (410)
T ss_dssp ECTTSSEEEEEE--TTSCCCEEETTSSCEEECCCCC-SSCEEEEEECSS---S-S-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred EcCCCCEEEEEe--CCCeEEEEeCCCCceeEEEcCC-CCCEEEEEEeCC---C-C-EEEEEeCCCeEEEEECCCCcEEEE
Confidence 345565555443 5778889998876654321111 111255666654 2 2 3343333678899999886432 1
Q ss_pred eccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCC-------C------
Q 016751 196 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLST-------D------ 261 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~-------~------ 261 (383)
.. ......... ...-+|.+...+..+ ..|..+|+.+...... ... .... +
T Consensus 230 ~~-~h~~~v~~~------~~~~~g~~l~s~s~D--------~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~ 293 (410)
T 1vyh_C 230 FT-GHREWVRMV------RPNQDGTLIASCSND--------QTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSI 293 (410)
T ss_dssp EE-CCSSCEEEE------EECTTSSEEEEEETT--------SCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGG
T ss_pred Ee-CCCccEEEE------EECCCCCEEEEEcCC--------CeEEEEECCCCceeeEecCC-CceEEEEEEcCcccccch
Confidence 11 111000000 112245555544433 4688888876644322 111 0000 0
Q ss_pred ----CCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCce
Q 016751 262 ----DADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGY 337 (383)
Q Consensus 262 ----~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 337 (383)
..........|.+.+.+..+ ..+.+|-+... .....+.........+.+..+|..++. ...++
T Consensus 294 ~~~~~~~~~~~~~~g~~l~sgs~D----~~i~iwd~~~~------~~~~~~~~h~~~v~~v~~~~~g~~l~s--~s~D~- 360 (410)
T 1vyh_C 294 SEATGSETKKSGKPGPFLLSGSRD----KTIKMWDVSTG------MCLMTLVGHDNWVRGVLFHSGGKFILS--CADDK- 360 (410)
T ss_dssp GGCCSCC-------CCEEEEEETT----SEEEEEETTTT------EEEEEEECCSSCEEEEEECSSSSCEEE--EETTT-
T ss_pred hhhccccccccCCCCCEEEEEeCC----CeEEEEECCCC------ceEEEEECCCCcEEEEEEcCCCCEEEE--EeCCC-
Confidence 00000001124555555544 48999988641 233333322113455666677766666 43566
Q ss_pred EEEEEeCCCCeE
Q 016751 338 GLLVYNPHSDTF 349 (383)
Q Consensus 338 ~~~~yd~~t~~~ 349 (383)
.+.++|.++++.
T Consensus 361 ~i~vwd~~~~~~ 372 (410)
T 1vyh_C 361 TLRVWDYKNKRC 372 (410)
T ss_dssp EEEEECCTTSCC
T ss_pred eEEEEECCCCce
Confidence 499999988753
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=80.78 E-value=27 Score=30.17 Aligned_cols=193 Identities=13% Similarity=0.046 Sum_probs=101.2
Q ss_pred ccCceEEEeecCCCCceEEEEccCccceee-cCCCCCCCCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCceee
Q 016751 118 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNSWKN 195 (383)
Q Consensus 118 s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~W~~ 195 (383)
+.+|.|....+....+.+.+.|+.|++-.. +|... ...+.|+... .+ ++..... ...+.+|+..+. +.
T Consensus 29 ~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---~~fgeGi~~~---g~--~lyv~t~~~~~v~viD~~t~--~v 98 (266)
T 2iwa_A 29 AENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD---SYFGEGLTLL---NE--KLYQVVWLKNIGFIYDRRTL--SN 98 (266)
T ss_dssp CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT---TCCEEEEEEE---TT--EEEEEETTCSEEEEEETTTT--EE
T ss_pred eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC---CcceEEEEEe---CC--EEEEEEecCCEEEEEECCCC--cE
Confidence 344787777642346789999999988554 33221 1233444443 32 3433332 668899998865 33
Q ss_pred eccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCee-eEeCCCCCC-CCCCCceEEEEeCCe
Q 016751 196 IAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDL-STDDADKYLNVFDGY 273 (383)
Q Consensus 196 ~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~-~~~~~~~~l~~~~g~ 273 (383)
+. .++.+ . .... ++..+|.-.|++.. ...+..+|+.+.+- ..++.. .. .....-..+...+|+
T Consensus 99 ~~-~i~~g-~-~~g~---glt~Dg~~l~vs~g--------s~~l~viD~~t~~v~~~I~Vg-~~~~p~~~~nele~~dg~ 163 (266)
T 2iwa_A 99 IK-NFTHQ-M-KDGW---GLATDGKILYGSDG--------TSILYEIDPHTFKLIKKHNVK-YNGHRVIRLNELEYINGE 163 (266)
T ss_dssp EE-EEECC-S-SSCC---EEEECSSSEEEECS--------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEETTE
T ss_pred EE-EEECC-C-CCeE---EEEECCCEEEEECC--------CCeEEEEECCCCcEEEEEEEC-CCCcccccceeEEEECCE
Confidence 33 33332 1 1111 56667653334432 25899999987543 444432 11 000011233334788
Q ss_pred EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-------------eeEEEEEeeCC-cEEEEEEeeCCceEE
Q 016751 274 LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-------------IWWPLGFTERG-KIFIRGECRHGGYGL 339 (383)
Q Consensus 274 L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-------------~~~~~~~~~~g-~i~~~~~~~~~~~~~ 339 (383)
|++..... -+|.+++- ..+..+..|+...+ ...-+++..++ .+|+. . ..+.++
T Consensus 164 lyvn~~~~------~~V~vID~----~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT--g-k~~~~v 230 (266)
T 2iwa_A 164 VWANIWQT------DCIARISA----KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT--G-KLWPKL 230 (266)
T ss_dssp EEEEETTS------SEEEEEET----TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE--E-TTCSEE
T ss_pred EEEecCCC------CeEEEEEC----CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE--C-CCCCeE
Confidence 87554322 25777764 23455566654310 12224445454 56666 5 555568
Q ss_pred EEEeCCCCe
Q 016751 340 LVYNPHSDT 348 (383)
Q Consensus 340 ~~yd~~t~~ 348 (383)
+..++.+..
T Consensus 231 ~~i~l~~~~ 239 (266)
T 2iwa_A 231 FEIKLHLVR 239 (266)
T ss_dssp EEEEEEECC
T ss_pred EEEEEeccc
Confidence 888776653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.30 E-value=30 Score=30.34 Aligned_cols=206 Identities=10% Similarity=0.055 Sum_probs=97.4
Q ss_pred EEccCceEEEeecCCCCceEEEEccCccce-----eecCCCCCCC-CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcC
Q 016751 116 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKY-----MTLPRPSLNP-RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLR 189 (383)
Q Consensus 116 ~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~-----~~LP~~~~~~-~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~ 189 (383)
.-+.+|-++.... .++.+.|||...... ..+....... ....+.+.|. + . .++.......+.+|+..
T Consensus 65 ~~sp~~~~las~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---g-~-~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 65 AWRPHTSLLAAGS--FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND---G-Y-YLATCSRDKSVWIWETD 137 (330)
T ss_dssp EECTTSSEEEEEE--TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT---S-C-EEEEEETTSCEEEEECC
T ss_pred EECCCCCEEEEEe--CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC---C-C-EEEEEeCCCEEEEEecc
Confidence 3345565554443 577888888743211 1111111111 1245556553 2 2 33333336688999984
Q ss_pred C--CceeeeccCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCc
Q 016751 190 S--NSWKNIAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDAD 264 (383)
Q Consensus 190 t--~~W~~~~~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~ 264 (383)
+ ..++.+. .+........ ++.+ +|.+...+..+ ..|..+|..+..+..+ .+. .+.. ..
T Consensus 138 ~~~~~~~~~~-~~~~h~~~v~-----~v~~~p~~~~l~s~s~D--------~~i~iW~~~~~~~~~~~~~~-~h~~--~v 200 (330)
T 2hes_X 138 ESGEEYECIS-VLQEHSQDVK-----HVIWHPSEALLASSSYD--------DTVRIWKDYDDDWECVAVLN-GHEG--TV 200 (330)
T ss_dssp TTCCCCEEEE-EECCCSSCEE-----EEEECSSSSEEEEEETT--------SCEEEEEEETTEEEEEEEEC-CCSS--CE
T ss_pred CCCCCeEEEE-EeccCCCceE-----EEEECCCCCEEEEEcCC--------CeEEEEECCCCCeeEEEEcc-CCCC--cE
Confidence 3 3454433 1110000000 1221 45544433332 4678888877766544 232 2111 11
Q ss_pred eEEEEeCC--eEEEEEecCCCCccEEEEEEeccCC--CCCCeEEEEEecC-CCceeEEEEEeeCCcEEEEEEeeCCceEE
Q 016751 265 KYLNVFDG--YLCVFATIPNNTFRSYELWVMKEYG--LTESWTKLYTIEK-PQRIWWPLGFTERGKIFIRGECRHGGYGL 339 (383)
Q Consensus 265 ~~l~~~~g--~L~~v~~~~~~~~~~l~iW~l~~~~--~~~~W~~~~~i~~-~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 339 (383)
..+.-..+ ...++.+..+ ..+.+|.+.... ....|.....++. .......+++..++.|+.. . .++ .+
T Consensus 201 ~~~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~--~-~dg-~v 273 (330)
T 2hes_X 201 WSSDFDKTEGVFRLCSGSDD---STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASV--G-ADG-VL 273 (330)
T ss_dssp EEEEECCSSSSCEEEEEETT---SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEE--E-TTS-CE
T ss_pred EEEEecCCCCeeEEEEEeCC---CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEE--e-CCC-EE
Confidence 22222222 3334444443 589999986431 2345766666543 1112444555555544444 3 555 49
Q ss_pred EEEeCCCCeEEEE
Q 016751 340 LVYNPHSDTFKCI 352 (383)
Q Consensus 340 ~~yd~~t~~~~~v 352 (383)
..||..+++++.+
T Consensus 274 ~iw~~~~~~~~~~ 286 (330)
T 2hes_X 274 AVYEEVDGEWKVF 286 (330)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEcCCCceEEE
Confidence 9999998877655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 383 | ||||
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 3e-08 | |
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 0.001 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 0.002 | |
| d1p22a1 | 118 | a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b | 0.003 |
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (112), Expect = 3e-08
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 25 RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 62
LP+++++ IF L + L ++ VCK W L + ++
Sbjct: 3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (82), Expect = 0.001
Identities = 11/70 (15%), Positives = 23/70 (32%)
Query: 25 RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHGIS 84
LP+++ + + LE K+L + C+ W L + + + R +
Sbjct: 21 LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVI 80
Query: 85 PSYLGFYSTK 94
K
Sbjct: 81 KPGFIHSPWK 90
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.0 bits (80), Expect = 0.002
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 25 RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRH 81
LP ++ + IF L+ +++ V ++WN ++ T + L S P F
Sbjct: 8 SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNS 64
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (80), Expect = 0.003
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 25 RLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 62
R + + +I L+ K+L VCK W + +
Sbjct: 17 RGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 383 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 99.26 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.23 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 99.13 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.72 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.7 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.47 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.37 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.11 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 94.5 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 93.57 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.53 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 91.12 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 89.86 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 87.85 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 86.23 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 84.2 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 83.82 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 82.45 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 82.18 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 80.5 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.8e-09 Score=94.83 Aligned_cols=237 Identities=15% Similarity=0.166 Sum_probs=150.3
Q ss_pred eeecccCCCcccccCC-CCCCCCCCCeeEEEccCceEEEeecC-------CCCceEEEEccCccceeecCCCCCCCCcee
Q 016751 88 LGFYSTKCKEFEDLCD-PPFRTQLADLDVVGSCNGVLCFCSNG-------SDRSLIYLWNPLIKKYMTLPRPSLNPRYLG 159 (383)
Q Consensus 88 ~~~~~~~~~~~~~l~~-p~~~~~~~~~~~~~s~~Gll~~~~~~-------~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~ 159 (383)
...|++....|..+.. |..+ ... ..+..+|-+++..+. .....++++||.+.+|..+|+++..+...+
T Consensus 21 ~~~yd~~t~~W~~~~~~p~~R---~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~ 96 (288)
T d1zgka1 21 LEAYNPSNGTWLRLADLQVPR---SGL-AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 96 (288)
T ss_dssp EEEEETTTTEEEECCCCSSCC---BSC-EEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred EEEEECCCCeEEECCCCCCcc---cee-EEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence 4578888888887742 2222 122 223335555443321 124478999999999999999887764433
Q ss_pred EEEeccCCCCCCeEEEEEEe------cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCC
Q 016751 160 FGVNSVSGHLDDFKVVTISV------NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDN 233 (383)
Q Consensus 160 ~g~d~~~~~~~~ykVv~~~~------~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~ 233 (383)
.... .+ |++.+.. ...+++|+..++.|...+ ..+..+..+. .+..++.+|..++.. ..
T Consensus 97 ~~~~-----~~--~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~-----~~~~~~~~~~~GG~~---~~ 160 (288)
T d1zgka1 97 VGVI-----DG--HIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTRRIGVG-----VAVLNRLLYAVGGFD---GT 160 (288)
T ss_dssp EEEE-----TT--EEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSCCBSCE-----EEEETTEEEEECCBC---SS
T ss_pred cccc-----ce--eeEEecceecccccceeeeeccccCcccccc-ccccccccce-----eeeeeecceEecCcc---cc
Confidence 3221 11 2222221 567899999999999888 6665544332 678899998877654 22
Q ss_pred CCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 016751 234 SCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR 313 (383)
Q Consensus 234 ~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 313 (383)
.....+..||+.+++|.....+.... .....+..+++|+++++.... ......|..+. ...+|..+..++...
T Consensus 161 ~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~GG~~~~-~~~~~~~~~~~--~~~~~~~~~~~p~~r- 233 (288)
T d1zgka1 161 NRLNSAECYYPERNEWRMITAMNTIR---SGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDV--ETETWTFVAPMKHRR- 233 (288)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCC---BSCEEEEETTEEEEECCBCSS-SBCCCEEEEET--TTTEEEECCCCSSCC-
T ss_pred cccceEEEeecccccccccccccccc---ccccccceeeeEEEecCcccc-ccccceeeeee--cceeeecccCccCcc-
Confidence 33457899999999999884431332 445677889999998876542 12234555554 246788876666554
Q ss_pred eeEEEEEeeCCcEEEEEEeeCCc----eEEEEEeCCCCeEEEEEE
Q 016751 314 IWWPLGFTERGKIFIRGECRHGG----YGLLVYNPHSDTFKCIGV 354 (383)
Q Consensus 314 ~~~~~~~~~~g~i~~~~~~~~~~----~~~~~yd~~t~~~~~v~~ 354 (383)
....++..+|+||+. .+.+. ..+.+||+++++|+.+..
T Consensus 234 -~~~~~~~~~~~l~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~~ 275 (288)
T d1zgka1 234 -SALGITVHQGRIYVL--GGYDGHTFLDSVECYDPDTDTWSEVTR 275 (288)
T ss_dssp -BSCEEEEETTEEEEE--CCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred -cceEEEEECCEEEEE--ecCCCCeecceEEEEECCCCEEEECCC
Confidence 222333446889998 32111 158999999999999953
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.8e-12 Score=76.94 Aligned_cols=40 Identities=28% Similarity=0.595 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHH
Q 016751 23 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTF 62 (383)
Q Consensus 23 ~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F 62 (383)
++.||+|++.+||++||++++.++++|||+|+.+++++.+
T Consensus 1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l 40 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40 (41)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence 3689999999999999999999999999999999988763
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3.3e-09 Score=93.14 Aligned_cols=197 Identities=11% Similarity=0.079 Sum_probs=128.3
Q ss_pred CceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe----------cCeEEEEEcCCCceeeeccCCC
Q 016751 132 RSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV----------NADAEVYSLRSNSWKNIAYGFP 201 (383)
Q Consensus 132 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~----------~~~~~vyss~t~~W~~~~~~~p 201 (383)
-..+.++||.|++|..+|++|..+...+.... .+ +++.+.. ...+++|+..+++|+.++ .+|
T Consensus 18 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-----~~--~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~-~~p 89 (288)
T d1zgka1 18 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-----GG--LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-PMS 89 (288)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-----TT--EEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-CCS
T ss_pred CceEEEEECCCCeEEECCCCCCccceeEEEEE-----CC--EEEEEeCcccCCCCccccchhhhcccccccccccc-ccc
Confidence 34688999999999999998877644332221 11 2222211 468899999999999999 888
Q ss_pred ceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEeCCeEEEEEec
Q 016751 202 RSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATI 280 (383)
Q Consensus 202 ~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~g~L~~v~~~ 280 (383)
.++..+. ++.++|++|.+++.. +.........+|+.++.|... ..| ..+ .....++.++.++++++.
T Consensus 90 ~~r~~~~-----~~~~~~~i~~~gg~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~r---~~~~~~~~~~~~~~~GG~ 157 (288)
T d1zgka1 90 VPRNRIG-----VGVIDGHIYAVGGSH---GCIHHNSVERYEPERDEWHLVAPML-TRR---IGVGVAVLNRLLYAVGGF 157 (288)
T ss_dssp SCCBTCE-----EEEETTEEEEECCEE---TTEECCCEEEEETTTTEEEECCCCS-SCC---BSCEEEEETTEEEEECCB
T ss_pred ceeccee-----ccccceeeEEeccee---cccccceeeeeccccCccccccccc-ccc---ccceeeeeeecceEecCc
Confidence 7765443 788899999987654 122345678899999999887 334 333 456677889999998766
Q ss_pred CCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCc--eEEEEEeCCCCeEEEEE
Q 016751 281 PNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG--YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 281 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~~~~yd~~t~~~~~v~ 353 (383)
... .....++.++. ...+|......+... ........++.|++.|-..... .....||+.+++|+.+.
T Consensus 158 ~~~-~~~~~~~~~d~--~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~ 227 (288)
T d1zgka1 158 DGT-NRLNSAECYYP--ERNEWRMITAMNTIR--SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 227 (288)
T ss_dssp CSS-CBCCCEEEEET--TTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred ccc-cccceEEEeec--ccccccccccccccc--ccccccceeeeEEEecCccccccccceeeeeecceeeeccc
Confidence 431 12234555543 235677655444432 2223334456787772110111 15899999999999874
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.72 E-value=1e-07 Score=87.03 Aligned_cols=245 Identities=14% Similarity=0.149 Sum_probs=134.9
Q ss_pred eecccCCCcccccCCCCCCCCCCCeeEEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCC
Q 016751 89 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGH 168 (383)
Q Consensus 89 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~ 168 (383)
.+|++....|........+............+|.+++..+ .......++||.+++|..+|+++..+.+.....-..
T Consensus 55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d--- 130 (387)
T d1k3ia3 55 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG-NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--- 130 (387)
T ss_dssp EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECS-SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT---
T ss_pred EEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeec-CCCcceeEecCccCcccccccccccccccceeeecC---
Confidence 3677777777654322221111122334556787776653 234578899999999999999988765533332221
Q ss_pred CCCeEEEEEEe-------cCeEEEEEcCCCceeeeccCCCceeeecc--Cc----ccce---eEECceEEEEEeeccCCC
Q 016751 169 LDDFKVVTISV-------NADAEVYSLRSNSWKNIAYGFPRSIEINR--SH----INSS---VFLNGSVHWCARFSCYHD 232 (383)
Q Consensus 169 ~~~ykVv~~~~-------~~~~~vyss~t~~W~~~~~~~p~~~~~~~--~~----~~~~---v~~~G~lYw~~~~~~~~~ 232 (383)
+ +|+.+.. ...+++|+..+++|+.++ .++....... .. .... ...+|.+|..+..
T Consensus 131 -G--~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~----- 201 (387)
T d1k3ia3 131 -G--RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP-NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS----- 201 (387)
T ss_dssp -S--CEEEECCCCCSSSCCCCEEEEETTTTEEEEET-TSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS-----
T ss_pred -C--ceeeeccccccccccceeeeecCCCCceeecC-CCcccccccccccceeeccceeEEEEeCCCCEEEecCc-----
Confidence 1 2333322 457999999999999887 4432221110 00 0001 1225666654433
Q ss_pred CCCCcEEEEEECCCCeeeEe-CCCCCCCC---CC---CceEEEEeCCeEEEEEecCCC----CccEEEEEEeccCC-CCC
Q 016751 233 NSCPWLIVSFDFAKEIFQTV-MMPYDLST---DD---ADKYLNVFDGYLCVFATIPNN----TFRSYELWVMKEYG-LTE 300 (383)
Q Consensus 233 ~~~~~~il~fD~~~~~~~~i-~lP~~~~~---~~---~~~~l~~~~g~L~~v~~~~~~----~~~~l~iW~l~~~~-~~~ 300 (383)
...+..+|+.+..|... ..| .... .. ....+...+|+++++++.... ......+..+.... ...
T Consensus 202 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (387)
T d1k3ia3 202 ---TAMNWYYTSGSGDVKSAGKRQ-SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN 277 (387)
T ss_dssp ---SEEEEEECSTTCEEEEEEECE-ETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE
T ss_pred ---CCcEEecCcccCcEeeccccc-cCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCC
Confidence 25788899999999776 333 2221 00 112233356899888875431 11223333333322 223
Q ss_pred CeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeC-------Cc---eEEEEEeCCCCeEEEEE
Q 016751 301 SWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH-------GG---YGLLVYNPHSDTFKCIG 353 (383)
Q Consensus 301 ~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~-------~~---~~~~~yd~~t~~~~~v~ 353 (383)
.|.....++... ......+..+|+||+. .+. +. ..+..||+++++|+.+.
T Consensus 278 ~~~~~~~~p~~r-~~~~~~~~~dg~i~v~--GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~ 337 (387)
T d1k3ia3 278 TVFASNGLYFAR-TFHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 337 (387)
T ss_dssp EEECTTCCSSCC-BSCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred ceeecccccccc-ccceeeeccCCeEEEE--CCcccCccCCCCcEeceEEEEECCCCeEEECC
Confidence 455444555443 2222333457788888 321 00 04788999999999884
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=1e-08 Score=75.46 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=49.5
Q ss_pred HhhHhHHhhhhcCCCccccCCCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHHHHHHHh
Q 016751 3 IKLMHTHMEKICGDREMKCSSFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIHLN 68 (383)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~~~ 68 (383)
++.|...+++.-+. ..++.||+|++..||+.|++++|+++++|||+|+.++.++.+=+....
T Consensus 3 ~~~~~~~~~p~~~~----D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~ 64 (102)
T d2ovrb1 3 VKHMMQVIEPQFQR----DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (102)
T ss_dssp HHHHHHHHCCCCCC----STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred HHHHHHHcCchhcc----CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 34455555555433 467889999999999999999999999999999999999877655543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.47 E-value=6e-07 Score=81.65 Aligned_cols=189 Identities=12% Similarity=0.005 Sum_probs=110.6
Q ss_pred ccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEe------------cCeEEEEEcCCCceeeeccCCCceeee
Q 016751 139 NPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISV------------NADAEVYSLRSNSWKNIAYGFPRSIEI 206 (383)
Q Consensus 139 NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~------------~~~~~vyss~t~~W~~~~~~~p~~~~~ 206 (383)
.|.+++|...++.|..+...+. .+. .+ ||+.+.. ...+++|+..+++|+... .++.+...
T Consensus 5 ~p~~g~W~~~~~~p~~~~~~a~--~~~---~g--kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-~~~~~~~~ 76 (387)
T d1k3ia3 5 QPGLGRWGPTIDLPIVPAAAAI--EPT---SG--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-VTVTKHDM 76 (387)
T ss_dssp CTTSCEEEEEEECSSCCSEEEE--ETT---TT--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-EEECSCCC
T ss_pred CCCCCccCCcCCCCccccEEEE--Eee---CC--EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC-CCCCCccc
Confidence 4888999988877765433222 222 22 4444432 225789999999998766 44333221
Q ss_pred ccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCCCCCCceEEEEe-CCeEEEEEecCCCC
Q 016751 207 NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVF-DGYLCVFATIPNNT 284 (383)
Q Consensus 207 ~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~-~g~L~~v~~~~~~~ 284 (383)
.... ..+..+|++|+.++.. ...+..||+.+++|..+ .+| ..+ .....+.. +|+++++++.....
T Consensus 77 ~~~~--~~~~~~g~i~v~Gg~~-------~~~~~~yd~~~~~w~~~~~~~-~~r---~~~~~~~~~dG~v~v~GG~~~~~ 143 (387)
T d1k3ia3 77 FCPG--ISMDGNGQIVVTGGND-------AKKTSLYDSSSDSWIPGPDMQ-VAR---GYQSSATMSDGRVFTIGGSWSGG 143 (387)
T ss_dssp SSCE--EEECTTSCEEEECSSS-------TTCEEEEEGGGTEEEECCCCS-SCC---SSCEEEECTTSCEEEECCCCCSS
T ss_pred ceeE--EEEecCCcEEEeecCC-------CcceeEecCccCccccccccc-ccc---cccceeeecCCceeeeccccccc
Confidence 1110 1456789999877643 34688999999999987 555 443 33445554 68999988754321
Q ss_pred ccEEEEEEeccCCCCCCeEEEEEecCCCc------------eeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 016751 285 FRSYELWVMKEYGLTESWTKLYTIEKPQR------------IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 352 (383)
Q Consensus 285 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~------------~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~~v 352 (383)
...-.++..+- ..+.|.....+..... ....+....+|+++.. ..... .+..||+.+..|...
T Consensus 144 ~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~--g~~~~-~~~~~~~~~~~~~~~ 218 (387)
T d1k3ia3 144 VFEKNGEVYSP--SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA--GPSTA-MNWYYTSGSGDVKSA 218 (387)
T ss_dssp SCCCCEEEEET--TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEEC--CSSSE-EEEEECSTTCEEEEE
T ss_pred cccceeeeecC--CCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEe--cCcCC-cEEecCcccCcEeec
Confidence 12223444443 2367987544332110 1111222345677766 42233 588999999999876
Q ss_pred E
Q 016751 353 G 353 (383)
Q Consensus 353 ~ 353 (383)
.
T Consensus 219 ~ 219 (387)
T d1k3ia3 219 G 219 (387)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=8.4e-08 Score=70.06 Aligned_cols=46 Identities=20% Similarity=0.461 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHhcCChhhhHHhhccchhhHhhcC-ChH-HHHHHHh
Q 016751 23 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLT-SKT-FVEIHLN 68 (383)
Q Consensus 23 ~~~Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~-s~~-F~~~~~~ 68 (383)
++.||+|++++||+.|++++|.+++.|||+|+.+++ ++. ..+.+.+
T Consensus 6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~ 53 (100)
T d1nexb1 6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLIS 53 (100)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 467999999999999999999999999999999985 455 4444433
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=5.3e-07 Score=67.84 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=35.8
Q ss_pred CCHHHHHHHHhcCChhhhHHhhccchhhHhhcCChHHHHHH
Q 016751 26 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIH 66 (383)
Q Consensus 26 Lp~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~s~~F~~~~ 66 (383)
|++|++..||+.|++++|+++.+|||+|+.+++++.+=+..
T Consensus 18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~ 58 (118)
T d1p22a1 18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (118)
T ss_dssp TCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred ChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 34699999999999999999999999999999987664443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.50 E-value=1.1 Score=37.44 Aligned_cols=208 Identities=10% Similarity=-0.046 Sum_probs=105.2
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
...+|-|.+.+. ...+++.+||.+++....+.+.. ..+++.++. .--+++ . ...+..|+..+++.+.+
T Consensus 26 d~~~~~l~wvDi--~~~~I~r~d~~~g~~~~~~~~~~---~~~i~~~~d-----g~l~va-~-~~gl~~~d~~tg~~~~l 93 (295)
T d2ghsa1 26 DPASGTAWWFNI--LERELHELHLASGRKTVHALPFM---GSALAKISD-----SKQLIA-S-DDGLFLRDTATGVLTLH 93 (295)
T ss_dssp ETTTTEEEEEEG--GGTEEEEEETTTTEEEEEECSSC---EEEEEEEET-----TEEEEE-E-TTEEEEEETTTCCEEEE
T ss_pred ECCCCEEEEEEC--CCCEEEEEECCCCeEEEEECCCC---cEEEEEecC-----CCEEEE-E-eCccEEeecccceeeEE
Confidence 455676666653 46789999999987665543321 123444432 222332 2 56899999999998877
Q ss_pred ccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe--CCeE
Q 016751 197 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF--DGYL 274 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~--~g~L 274 (383)
. .........+.. ...+--+|.+|+-.... ........+..+ .+.+...+.-+ ... ...++.. +..|
T Consensus 94 ~-~~~~~~~~~~~n-d~~vd~~G~iw~~~~~~--~~~~~~g~l~~~--~~g~~~~~~~~-~~~----~Ng~~~s~d~~~l 162 (295)
T d2ghsa1 94 A-ELESDLPGNRSN-DGRMHPSGALWIGTMGR--KAETGAGSIYHV--AKGKVTKLFAD-ISI----PNSICFSPDGTTG 162 (295)
T ss_dssp E-CSSTTCTTEEEE-EEEECTTSCEEEEEEET--TCCTTCEEEEEE--ETTEEEEEEEE-ESS----EEEEEECTTSCEE
T ss_pred e-eeecCCCcccce-eeEECCCCCEEEEeccc--cccccceeEeee--cCCcEEEEeec-cCC----cceeeecCCCceE
Confidence 5 332211100000 00344478876654433 111122334333 34454443211 001 1123332 3356
Q ss_pred EEEEecCCCCccEEEEEEeccCCCCC----CeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 016751 275 CVFATIPNNTFRSYELWVMKEYGLTE----SWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 350 (383)
Q Consensus 275 ~~v~~~~~~~~~~l~iW~l~~~~~~~----~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~~ 350 (383)
++++...+ . ||..+-+.... +.......+-..-...-+++..+|.|++. .-.++ .|..||++.+.+.
T Consensus 163 ~~~dt~~~----~--I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva--~~~~g-~V~~~dp~G~~~~ 233 (295)
T d2ghsa1 163 YFVDTKVN----R--LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEG-AVDRYDTDGNHIA 233 (295)
T ss_dssp EEEETTTC----E--EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTT-EEEEECTTCCEEE
T ss_pred EEeecccc----e--eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee--eeCCC-ceEEecCCCcEee
Confidence 66665443 3 55443221111 12222223222112333455678899998 62344 4999999988888
Q ss_pred EEEEec
Q 016751 351 CIGVHL 356 (383)
Q Consensus 351 ~v~~~~ 356 (383)
++.+..
T Consensus 234 ~i~lP~ 239 (295)
T d2ghsa1 234 RYEVPG 239 (295)
T ss_dssp EEECSC
T ss_pred EecCCC
Confidence 887653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.57 E-value=1.8 Score=36.47 Aligned_cols=206 Identities=12% Similarity=0.012 Sum_probs=105.6
Q ss_pred cCceEEEeecCCCCceEEEEccCccceeec-CCCCCCCCceeEEEeccCCCCCCeEEEEEEe---cCeEEEEEcCCCcee
Q 016751 119 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTL-PRPSLNPRYLGFGVNSVSGHLDDFKVVTISV---NADAEVYSLRSNSWK 194 (383)
Q Consensus 119 ~~Gll~~~~~~~~~~~~~v~NP~t~~~~~L-P~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~---~~~~~vyss~t~~W~ 194 (383)
.+|-|.+.+. ...+++.+||.+++.... .+... ...++.+++. . ...|..... ...+..++..++...
T Consensus 49 ~~G~Ly~~D~--~~g~I~ri~p~g~~~~~~~~~~~~--~p~gla~~~d---G-~l~va~~~~~~~~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 49 RQGQLFLLDV--FEGNIFKINPETKEIKRPFVSHKA--NPAAIKIHKD---G-RLFVCYLGDFKSTGGIFAATENGDNLQ 120 (319)
T ss_dssp TTSCEEEEET--TTCEEEEECTTTCCEEEEEECSSS--SEEEEEECTT---S-CEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CCCCEEEEEC--CCCEEEEEECCCCeEEEEEeCCCC--CeeEEEECCC---C-CEEEEecCCCccceeEEEEcCCCceee
Confidence 4566666653 567888999988764443 22111 1256666654 3 222211110 234555555555544
Q ss_pred eeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe----CCCCCCCCCCCceEEEEe
Q 016751 195 NIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDADKYLNVF 270 (383)
Q Consensus 195 ~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i----~lP~~~~~~~~~~~l~~~ 270 (383)
............ .. ..+--+|.+|+..... ........+..+|+.......+ ..| .-++..
T Consensus 121 ~~~~~~~~~~~~-nd---~~~d~~G~l~vtd~~~--~~~~~~g~v~~~~~dg~~~~~~~~~~~~p---------nGia~s 185 (319)
T d2dg1a1 121 DIIEDLSTAYCI-DD---MVFDSKGGFYFTDFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISVA---------NGIALS 185 (319)
T ss_dssp EEECSSSSCCCE-EE---EEECTTSCEEEEECCC--BTTBCCEEEEEECTTSCCEEEEEEEESSE---------EEEEEC
T ss_pred eeccCCCcccCC-cc---eeEEeccceeeccccc--ccccCcceeEEEecccceeEEEeecccee---------eeeeec
Confidence 333111111110 00 0345578888765432 1122345788888887666554 223 124433
Q ss_pred -CC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec--CCCceeEE--EEEeeCCcEEEEEEeeCCceEEEEEeC
Q 016751 271 -DG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE--KPQRIWWP--LGFTERGKIFIRGECRHGGYGLLVYNP 344 (383)
Q Consensus 271 -~g-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~--~~~~~~~~--~~~~~~g~i~~~~~~~~~~~~~~~yd~ 344 (383)
+| .|+++..... .+..+.++..+. ..+....... ... ...| +++..+|+||+. ...++ .+.+||+
T Consensus 186 ~dg~~lyvad~~~~----~I~~~d~~~~g~-~~~~~~~~~~~~~~~-~~~PdGl~vD~~G~l~Va--~~~~g-~V~~~~p 256 (319)
T d2dg1a1 186 TDEKVLWVTETTAN----RLHRIALEDDGV-TIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVA--MYGQG-RVLVFNK 256 (319)
T ss_dssp TTSSEEEEEEGGGT----EEEEEEECTTSS-SEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEE--EETTT-EEEEECT
T ss_pred cccceEEEecccCC----ceEEEEEcCCCc-eeccccceeeeccCC-ccceeeeeEcCCCCEEEE--EcCCC-EEEEECC
Confidence 34 5788776543 444444443321 2222222222 111 1234 455678899998 62344 5999999
Q ss_pred CCCeEEEEEEec
Q 016751 345 HSDTFKCIGVHL 356 (383)
Q Consensus 345 ~t~~~~~v~~~~ 356 (383)
+.+.+.++.+.+
T Consensus 257 ~G~~l~~i~~P~ 268 (319)
T d2dg1a1 257 RGYPIGQILIPG 268 (319)
T ss_dssp TSCEEEEEECTT
T ss_pred CCcEEEEEeCCC
Confidence 887788887654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.53 E-value=2.4 Score=35.19 Aligned_cols=197 Identities=11% Similarity=0.049 Sum_probs=100.1
Q ss_pred EccCceEEEeecCCCCceEEEEccCccceeecCCCCCC-CCceeEEEeccCCCCCCeEEEEEEe-cCeEEEEEcCCCcee
Q 016751 117 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN-PRYLGFGVNSVSGHLDDFKVVTISV-NADAEVYSLRSNSWK 194 (383)
Q Consensus 117 ~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~-~~~~~~g~d~~~~~~~~ykVv~~~~-~~~~~vyss~t~~W~ 194 (383)
-+-+|-++.... .++.+.|||..+++...-...+.. .....+.+.+. +.+-+++... ...+.|++..+++-.
T Consensus 66 ~sp~g~~latg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d----~~~l~~~~~~~~~~~~v~~~~~~~~~ 139 (311)
T d1nr0a1 66 TSPSGYYCASGD--VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE----SKRIAAVGEGRERFGHVFLFDTGTSN 139 (311)
T ss_dssp ECTTSSEEEEEE--TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT----SCEEEEEECCSSCSEEEEETTTCCBC
T ss_pred EeCCCCeEeccc--cCceEeeeeeeccccccccccccccCcccccccccc----cccccccccccccccccccccccccc
Confidence 466777666553 678899999887654321111111 11245566553 2333333211 334778887765432
Q ss_pred eeccCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-C
Q 016751 195 NIAYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-D 271 (383)
Q Consensus 195 ~~~~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~ 271 (383)
..-....... . ++.+ +|....+.+.. ...|..||+.+.+....... ... ....+... +
T Consensus 140 ~~l~~h~~~v-----~---~v~~~~~~~~~l~sgs~-------d~~i~i~d~~~~~~~~~~~~-~~~---~i~~v~~~p~ 200 (311)
T d1nr0a1 140 GNLTGQARAM-----N---SVDFKPSRPFRIISGSD-------DNTVAIFEGPPFKFKSTFGE-HTK---FVHSVRYNPD 200 (311)
T ss_dssp BCCCCCSSCE-----E---EEEECSSSSCEEEEEET-------TSCEEEEETTTBEEEEEECC-CSS---CEEEEEECTT
T ss_pred cccccccccc-----c---cccccccceeeeccccc-------cccccccccccccccccccc-ccc---cccccccCcc
Confidence 1110000000 0 2222 34433333322 24688899988765444221 111 11223333 4
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-------eeEEEEEeeCCcEEEEEEeeCCceEEEEEeC
Q 016751 272 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-------IWWPLGFTERGKIFIRGECRHGGYGLLVYNP 344 (383)
Q Consensus 272 g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-------~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~ 344 (383)
|++.+....+ ..+.+|.+.. +.+...+..... .+..+++..+|..++. ...++ .+..||.
T Consensus 201 ~~~l~~~~~d----~~v~~~d~~~------~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t--gs~Dg-~v~iwd~ 267 (311)
T d1nr0a1 201 GSLFASTGGD----GTIVLYNGVD------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS--ASADK-TIKIWNV 267 (311)
T ss_dssp SSEEEEEETT----SCEEEEETTT------CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE--EETTS-EEEEEET
T ss_pred cccccccccc----cccccccccc------ccccccccccccccccccccccccccCCCCCEEEE--EeCCC-eEEEEEC
Confidence 6666655555 4899998765 233333432211 2444666677777776 43455 4999999
Q ss_pred CCCeEEE
Q 016751 345 HSDTFKC 351 (383)
Q Consensus 345 ~t~~~~~ 351 (383)
++++..+
T Consensus 268 ~t~~~~~ 274 (311)
T d1nr0a1 268 ATLKVEK 274 (311)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 9998543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.12 E-value=3.3 Score=33.80 Aligned_cols=205 Identities=10% Similarity=0.083 Sum_probs=107.1
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccceeecCCCCCCC----CceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCC
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP----RYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRS 190 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~----~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t 190 (383)
+..+.+|-|.+.+. ...++.++||..+-...++...... ...++.++.. ...+-++.-.....+.+++...
T Consensus 28 vavd~dg~i~VaD~--~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 28 VAVNAQNDIIVADT--NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN---SGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp EEECTTCCEEEEEG--GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETT---TTEEEEEECGGGCEEEEECTTS
T ss_pred EEEcCCCCEEEEEC--CCCEEEEEeCCCCEEEEecccCCCccccccccccccccc---ccccceeccCCccccccccccc
Confidence 44445788877764 5678889998754444454432221 1144444443 3333222222255777777766
Q ss_pred CceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe
Q 016751 191 NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF 270 (383)
Q Consensus 191 ~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~ 270 (383)
..++... ......... . .+.-+|.+|...... ..+..||........+..+ .... ....++..
T Consensus 103 ~~~~~~~-~~~~~~p~~--~---avd~~G~i~v~~~~~--------~~~~~~~~~g~~~~~~g~~-~~~~--~~~~i~~d 165 (279)
T d1q7fa_ 103 QFVRKFG-ATILQHPRG--V---TVDNKGRIIVVECKV--------MRVIIFDQNGNVLHKFGCS-KHLE--FPNGVVVN 165 (279)
T ss_dssp CEEEEEC-TTTCSCEEE--E---EECTTSCEEEEETTT--------TEEEEECTTSCEEEEEECT-TTCS--SEEEEEEC
T ss_pred cceeecC-CCcccccce--e---ccccCCcEEEEeecc--------ceeeEeccCCceeeccccc-cccc--ccceeeec
Confidence 6666554 211111100 0 344468888865543 5889999887766655333 2221 22334443
Q ss_pred -CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEE--EEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 016751 271 -DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWP--LGFTERGKIFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 271 -~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
+|.|+++..... . |++.+.. .++.. .+........| +++..+|+||+. ...+...+..||++-+
T Consensus 166 ~~g~i~v~d~~~~----~--V~~~d~~---G~~~~--~~g~~g~~~~P~giavD~~G~i~Va--d~~~~~~v~~f~~~G~ 232 (279)
T d1q7fa_ 166 DKQEIFISDNRAH----C--VKVFNYE---GQYLR--QIGGEGITNYPIGVGINSNGEILIA--DNHNNFNLTIFTQDGQ 232 (279)
T ss_dssp SSSEEEEEEGGGT----E--EEEEETT---CCEEE--EESCTTTSCSEEEEEECTTCCEEEE--ECSSSCEEEEECTTSC
T ss_pred cceeEEeeecccc----c--eeeeecC---Cceee--eecccccccCCcccccccCCeEEEE--ECCCCcEEEEECCCCC
Confidence 478888776543 3 4445442 22332 33322112233 455678899988 4112224889997655
Q ss_pred eEEEEEE
Q 016751 348 TFKCIGV 354 (383)
Q Consensus 348 ~~~~v~~ 354 (383)
-...+..
T Consensus 233 ~~~~~~~ 239 (279)
T d1q7fa_ 233 LISALES 239 (279)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 4455544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.86 E-value=2.7 Score=34.08 Aligned_cols=142 Identities=8% Similarity=0.004 Sum_probs=68.0
Q ss_pred CCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCCCceeeeccCc
Q 016751 131 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGFPRSIEINRSH 210 (383)
Q Consensus 131 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~ 210 (383)
.++.+.++|..+++...+...........+.+++. +.+ ++.......+.+|+..++.................+-
T Consensus 156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~-l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l 230 (299)
T d1nr0a2 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN----GAF-LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 230 (299)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT----SSE-EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred ccccccccccccccccccccccccccccccccccc----ccc-ccccccccccccccccccccccccccccccccccccc
Confidence 56678888877766554433222222245555553 233 3333335678999988765433221211100000000
Q ss_pred ccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEeCCeEEEEEecCCCCccEEEE
Q 016751 211 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYEL 290 (383)
Q Consensus 211 ~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~g~L~~v~~~~~~~~~~l~i 290 (383)
...-+|.....+..+ ..|..+|+.+.....+......... ....+.-.+|...+....+ ..+++
T Consensus 231 ---~~s~~~~~l~sgs~d--------g~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~s~s~D----~~i~i 294 (299)
T d1nr0a2 231 ---SWSPDNVRLATGSLD--------NSVIVWNMNKPSDHPIIIKGAHAMS-SVNSVIWLNETTIVSAGQD----SNIKF 294 (299)
T ss_dssp ---EECTTSSEEEEEETT--------SCEEEEETTCTTSCCEEETTSSTTS-CEEEEEEEETTEEEEEETT----SCEEE
T ss_pred ---cccccccceEEEcCC--------CEEEEEECCCCCcceEEEecCCCCC-cEEEEEECCCCEEEEEeCC----CEEEE
Confidence 122255554444433 4788999987655433111011111 1122333455554444444 58999
Q ss_pred EEe
Q 016751 291 WVM 293 (383)
Q Consensus 291 W~l 293 (383)
|.+
T Consensus 295 Wdl 297 (299)
T d1nr0a2 295 WNV 297 (299)
T ss_dssp EEC
T ss_pred Eec
Confidence 976
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.85 E-value=6.9 Score=32.91 Aligned_cols=203 Identities=11% Similarity=0.096 Sum_probs=96.5
Q ss_pred ccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCC-ceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeee
Q 016751 118 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNI 196 (383)
Q Consensus 118 s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~-~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~ 196 (383)
+.+|-++.... .++.+.|||..++++..+.....+.. ...+.+.|. +.| ++.......+.|++..++.|+..
T Consensus 16 s~dg~~la~~~--~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~----~~~-l~s~s~D~~i~vWd~~~~~~~~~ 88 (371)
T d1k8kc_ 16 NKDRTQIAICP--NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD----SNR-IVTCGTDRNAYVWTLKGRTWKPT 88 (371)
T ss_dssp CTTSSEEEEEC--SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT----TTE-EEEEETTSCEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEe--CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC----CCE-EEEEECCCeEEEEeecccccccc
Confidence 44565544432 45678889988877655544332222 255667664 334 33333356899999999999765
Q ss_pred ccCCCceeeeccCcccceeEE--CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CCe
Q 016751 197 AYGFPRSIEINRSHINSSVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGY 273 (383)
Q Consensus 197 ~~~~p~~~~~~~~~~~~~v~~--~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~ 273 (383)
. .......... ++.+ +|.....+... ..-.+..++..+..+...... ..... ....+.-. +|+
T Consensus 89 ~-~~~~~~~~v~-----~i~~~p~~~~l~~~s~d------~~i~i~~~~~~~~~~~~~~~~-~~~~~-~v~~v~~~p~~~ 154 (371)
T d1k8kc_ 89 L-VILRINRAAR-----CVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIK-KPIRS-TVLSLDWHPNSV 154 (371)
T ss_dssp E-ECCCCSSCEE-----EEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEEC-TTCCS-CEEEEEECTTSS
T ss_pred c-cccccccccc-----ccccccccccceeeccc------Ccceeeeeecccccccccccc-ccccc-cccccccccccc
Confidence 4 2221100000 1111 44433333322 223455555555544433211 11110 11122222 355
Q ss_pred EEEEEecCCCCccEEEEEEeccCCC-----CCCeE-------EEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEE
Q 016751 274 LCVFATIPNNTFRSYELWVMKEYGL-----TESWT-------KLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLV 341 (383)
Q Consensus 274 L~~v~~~~~~~~~~l~iW~l~~~~~-----~~~W~-------~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 341 (383)
+.+.+..+ ..+.+|.+..... ...|. ..............+++..+|..++. ...++ .+..
T Consensus 155 ~l~s~s~D----~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s--~~~d~-~i~i 227 (371)
T d1k8kc_ 155 LLAAGSCD----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDS-TVCL 227 (371)
T ss_dssp EEEEEETT----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTT-EEEE
T ss_pred ceeccccC----cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc--cccCC-cceE
Confidence 55555444 4889998754211 11121 11111111112344556666765555 32455 4888
Q ss_pred EeCCCCe
Q 016751 342 YNPHSDT 348 (383)
Q Consensus 342 yd~~t~~ 348 (383)
+|.++++
T Consensus 228 wd~~~~~ 234 (371)
T d1k8kc_ 228 ADADKKM 234 (371)
T ss_dssp EEGGGTT
T ss_pred Eeeeccc
Confidence 8887765
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.23 E-value=8.5 Score=32.29 Aligned_cols=145 Identities=6% Similarity=0.056 Sum_probs=76.0
Q ss_pred cCeEEEEEcCCCceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCC
Q 016751 180 NADAEVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDL 258 (383)
Q Consensus 180 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~ 258 (383)
...+.||+..++.+..+. .+........+- ...-+|.+-..+..+ ..|..+|+.+..+... .+. ..
T Consensus 28 ~~~i~iw~~~~~~~~~~~-~l~gH~~~V~~l---~fsp~~~~l~s~s~D--------~~i~vWd~~~~~~~~~~~~~-~~ 94 (371)
T d1k8kc_ 28 NHEVHIYEKSGNKWVQVH-ELKEHNGQVTGV---DWAPDSNRIVTCGTD--------RNAYVWTLKGRTWKPTLVIL-RI 94 (371)
T ss_dssp SSEEEEEEEETTEEEEEE-EEECCSSCEEEE---EEETTTTEEEEEETT--------SCEEEEEEETTEEEEEEECC-CC
T ss_pred CCEEEEEECCCCCEEEEE-EecCCCCCEEEE---EECCCCCEEEEEECC--------CeEEEEeecccccccccccc-cc
Confidence 457899999998887665 221100000000 112245543333322 4788899998888755 343 22
Q ss_pred CCCCCceEEEEe-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCce
Q 016751 259 STDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGY 337 (383)
Q Consensus 259 ~~~~~~~~l~~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 337 (383)
.. ....+.-. +|+..+++..+ ..+.+|.++... ..|...............+.+..+|..++. ...++
T Consensus 95 ~~--~v~~i~~~p~~~~l~~~s~d----~~i~i~~~~~~~--~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s--~s~D~- 163 (371)
T d1k8kc_ 95 NR--AARCVRWAPNEKKFAVGSGS----RVISICYFEQEN--DWWVCKHIKKPIRSTVLSLDWHPNSVLLAA--GSCDF- 163 (371)
T ss_dssp SS--CEEEEEECTTSSEEEEEETT----SSEEEEEEETTT--TEEEEEEECTTCCSCEEEEEECTTSSEEEE--EETTS-
T ss_pred cc--cccccccccccccceeeccc----Ccceeeeeeccc--ccccccccccccccccccccccccccceec--cccCc-
Confidence 21 11122222 46655555544 489999988632 334433333222112344555667777666 32455
Q ss_pred EEEEEeCCCCe
Q 016751 338 GLLVYNPHSDT 348 (383)
Q Consensus 338 ~~~~yd~~t~~ 348 (383)
.+..||...+.
T Consensus 164 ~v~v~~~~~~~ 174 (371)
T d1k8kc_ 164 KCRIFSAYIKE 174 (371)
T ss_dssp CEEEEECCCTT
T ss_pred EEEEEeeccCc
Confidence 38888876543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=84.20 E-value=12 Score=32.38 Aligned_cols=200 Identities=11% Similarity=0.002 Sum_probs=106.1
Q ss_pred ceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCceeeeccCC
Q 016751 121 GVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWKNIAYGF 200 (383)
Q Consensus 121 Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~~~~~~~ 200 (383)
.++.+... .++.+.|+|+.|++.+.--+... ...++.|.|. +.|-.+. .....+.+++..++.-+... .+
T Consensus 32 ~~~~v~~~--d~g~v~v~D~~t~~v~~~~~~g~--~~~~v~fSpD----G~~l~~~-s~dg~v~~~d~~t~~~~~~~-~i 101 (432)
T d1qksa2 32 NLFSVTLR--DAGQIALIDGSTYEIKTVLDTGY--AVHISRLSAS----GRYLFVI-GRDGKVNMIDLWMKEPTTVA-EI 101 (432)
T ss_dssp GEEEEEET--TTTEEEEEETTTCCEEEEEECSS--CEEEEEECTT----SCEEEEE-ETTSEEEEEETTSSSCCEEE-EE
T ss_pred cEEEEEEc--CCCEEEEEECCCCcEEEEEeCCC--CeeEEEECCC----CCEEEEE-cCCCCEEEEEeeCCCceEEE-EE
Confidence 45444443 68899999999988665322221 2255666664 3344332 33568899999887654443 22
Q ss_pred Cce---eeeccCcccceeEECceE-EEEEeeccCCCCCCCcEEEEEECCCCeeeEe-CCCCCCC-------CCCCceEEE
Q 016751 201 PRS---IEINRSHINSSVFLNGSV-HWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLS-------TDDADKYLN 268 (383)
Q Consensus 201 p~~---~~~~~~~~~~~v~~~G~l-Yw~~~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~-------~~~~~~~l~ 268 (383)
+.. ....... ...-+|.. |..+... ..+..+|..+.+.... ..+ ... .+.....+.
T Consensus 102 ~~~~~~~~~~~s~---~~SpDG~~l~vs~~~~--------~~v~i~d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~ 169 (432)
T d1qksa2 102 KIGSEARSIETSK---MEGWEDKYAIAGAYWP--------PQYVIMDGETLEPKKIQSTR-GMTYDEQEYHPEPRVAAIL 169 (432)
T ss_dssp ECCSEEEEEEECC---STTCTTTEEEEEEEET--------TEEEEEETTTCCEEEEEECC-EECTTTCCEESCCCEEEEE
T ss_pred ecCCCCCCeEEec---ccCCCCCEEEEEcCCC--------CeEEEEeCccccceeeeccC-CccccceeccCCCceeEEE
Confidence 211 1111100 12236764 5544433 6899999988766443 221 111 011112223
Q ss_pred Ee-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 016751 269 VF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD 347 (383)
Q Consensus 269 ~~-~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~ 347 (383)
.. +|...++...+. ..+.+|...+ .+-.++.+++... ...-+.+..+|+.++.. ...+. .+.+.|.+++
T Consensus 170 ~s~dg~~~~vs~~~~---~~i~~~d~~~----~~~~~~~~i~~g~-~~~~~~~spdg~~~~va-~~~~~-~v~v~d~~~~ 239 (432)
T d1qksa2 170 ASHYRPEFIVNVKET---GKILLVDYTD----LNNLKTTEISAER-FLHDGGLDGSHRYFITA-ANARN-KLVVIDTKEG 239 (432)
T ss_dssp ECSSSSEEEEEETTT---TEEEEEETTC----SSEEEEEEEECCS-SEEEEEECTTSCEEEEE-EGGGT-EEEEEETTTT
T ss_pred ECCCCCEEEEEEccC---CeEEEEEccC----CCcceEEEEcccC-ccccceECCCCCEEEEe-ccccc-eEEEeecccc
Confidence 22 355555555443 4555555443 2233456666544 24456777788654441 31333 5899999998
Q ss_pred eEEEE
Q 016751 348 TFKCI 352 (383)
Q Consensus 348 ~~~~v 352 (383)
+....
T Consensus 240 ~~~~~ 244 (432)
T d1qksa2 240 KLVAI 244 (432)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 87654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.82 E-value=10 Score=31.15 Aligned_cols=199 Identities=10% Similarity=0.083 Sum_probs=98.6
Q ss_pred EEEccCceEEEeecCCCCceEEEEccCccceee-cCC--CCCCCCc-eeEEEeccCCCCCCeEEEEEEecCeEEEEEcCC
Q 016751 115 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMT-LPR--PSLNPRY-LGFGVNSVSGHLDDFKVVTISVNADAEVYSLRS 190 (383)
Q Consensus 115 ~~~s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~-LP~--~~~~~~~-~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t 190 (383)
+.-+.+|-.+... .++.+.|||..+.+... +.. ....... ..+.+.|. +.+ ++.......+.+|+...
T Consensus 57 v~fs~~g~~latg---~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d----g~~-l~s~~~dg~i~iwd~~~ 128 (337)
T d1gxra_ 57 VTISNPTRHVYTG---GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD----GCT-LIVGGEASTLSIWDLAA 128 (337)
T ss_dssp EEECSSSSEEEEE---CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT----SSE-EEEEESSSEEEEEECCC
T ss_pred EEECCCCCEEEEE---ECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC----CCE-EEEeecccccccccccc
Confidence 3446667666655 35678899876543221 111 1111111 45556553 333 33333366899999887
Q ss_pred CceeeeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe
Q 016751 191 NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF 270 (383)
Q Consensus 191 ~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~ 270 (383)
.+.+... .+.......... ...-+|.+...+... ..|..+|+.+++....... ... ....+...
T Consensus 129 ~~~~~~~-~~~~~~~~v~~~---~~~~~~~~l~s~~~d--------~~i~~~~~~~~~~~~~~~~-~~~---~v~~l~~s 192 (337)
T d1gxra_ 129 PTPRIKA-ELTSSAPACYAL---AISPDSKVCFSCCSD--------GNIAVWDLHNQTLVRQFQG-HTD---GASCIDIS 192 (337)
T ss_dssp C--EEEE-EEECSSSCEEEE---EECTTSSEEEEEETT--------SCEEEEETTTTEEEEEECC-CSS---CEEEEEEC
T ss_pred ccccccc-cccccccccccc---ccccccccccccccc--------ccccccccccccccccccc-ccc---cccccccc
Confidence 7665443 211100000000 122245444444333 4788999988765544222 111 11223332
Q ss_pred -CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 016751 271 -DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 349 (383)
Q Consensus 271 -~g~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~~ 349 (383)
+|...++...+ ..+.+|.++.. ..+....... ....+++..+++.++. ...++ .+..||.++.+.
T Consensus 193 ~~~~~~~~~~~d----~~v~i~d~~~~------~~~~~~~~~~-~i~~l~~~~~~~~l~~--~~~d~-~i~i~d~~~~~~ 258 (337)
T d1gxra_ 193 NDGTKLWTGGLD----NTVRSWDLREG------RQLQQHDFTS-QIFSLGYCPTGEWLAV--GMESS-NVEVLHVNKPDK 258 (337)
T ss_dssp TTSSEEEEEETT----SEEEEEETTTT------EEEEEEECSS-CEEEEEECTTSSEEEE--EETTS-CEEEEETTSSCE
T ss_pred cccccccccccc----ccccccccccc------eeeccccccc-ceEEEEEcccccccce--ecccc-cccccccccccc
Confidence 35555555544 48899987652 1222333322 2444556666766665 32455 388889888765
Q ss_pred EE
Q 016751 350 KC 351 (383)
Q Consensus 350 ~~ 351 (383)
..
T Consensus 259 ~~ 260 (337)
T d1gxra_ 259 YQ 260 (337)
T ss_dssp EE
T ss_pred cc
Confidence 44
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=82.45 E-value=10 Score=30.19 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=88.2
Q ss_pred ccCceEEEeecCCCCceEEEEccCccceeecCCCCCCCCceeEEEeccCCCCCCeEEEEEEecCeEEEEEcCCCcee---
Q 016751 118 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVVTISVNADAEVYSLRSNSWK--- 194 (383)
Q Consensus 118 s~~Gll~~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykVv~~~~~~~~~vyss~t~~W~--- 194 (383)
+-+|-+++... .++.+.+||..+++....-+.........+.+.+. + . ++.......+.+++.....-.
T Consensus 21 s~dg~~l~s~s--~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~---g-~--~~~~~~d~~v~~~~~~~~~~~~~~ 92 (299)
T d1nr0a2 21 SADGKTLFSAD--AEGHINSWDISTGISNRVFPDVHATMITGIKTTSK---G-D--LFTVSWDDHLKVVPAGGSGVDSSK 92 (299)
T ss_dssp CTTSSEEEEEE--TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT---S-C--EEEEETTTEEEEECSSSSSSCTTS
T ss_pred CCCCCEEEEEc--CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc---c-e--eecccceeeEEEeccCCccccccc
Confidence 44565555543 56788999988877554322111112245555554 2 2 333333556777776543211
Q ss_pred eeccCCCceeeeccCcccceeEECceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCCCCCCCCCCceEEEEe-CCe
Q 016751 195 NIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGY 273 (383)
Q Consensus 195 ~~~~~~p~~~~~~~~~~~~~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~g~ 273 (383)
............. .+.-+|.+...+..+ .+..+|... ...+... . ....++.. +|+
T Consensus 93 ~~~~~~~~~~~~~------~~s~~g~~~~~~~~~---------~i~~~~~~~--~~~~~~~---~---~~~~~~~s~~~~ 149 (299)
T d1nr0a2 93 AVANKLSSQPLGL------AVSADGDIAVAACYK---------HIAIYSHGK--LTEVPIS---Y---NSSCVALSNDKQ 149 (299)
T ss_dssp CCEEECSSCEEEE------EECTTSSCEEEEESS---------EEEEEETTE--EEEEECS---S---CEEEEEECTTSC
T ss_pred ccccccccccccc------ccccccccccccccc---------ccccccccc--ccccccc---c---cccccccccccc
Confidence 1110111100000 122245544433332 566676432 2222211 1 11223333 355
Q ss_pred EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEEEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 016751 274 LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 348 (383)
Q Consensus 274 L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~yd~~t~~ 348 (383)
+.+++..+ ..+.+|.++. .+......+.... ....+.+..++..++. ...++ .+..||..++.
T Consensus 150 ~l~~g~~d----g~i~~~d~~~----~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~--~~~d~-~i~~~~~~~~~ 212 (299)
T d1nr0a2 150 FVAVGGQD----SKVHVYKLSG----ASVSEVKTIVHPA-EITSVAFSNNGAFLVA--TDQSR-KVIPYSVANNF 212 (299)
T ss_dssp EEEEEETT----SEEEEEEEET----TEEEEEEEEECSS-CEEEEEECTTSSEEEE--EETTS-CEEEEEGGGTT
T ss_pred cccccccc----cccccccccc----ccccccccccccc-cccccccccccccccc--ccccc-ccccccccccc
Confidence 55555544 4899998875 2223333333322 2444556666666665 32344 38888877654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=82.18 E-value=2.9 Score=38.39 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=23.9
Q ss_pred eeEECceEEEEEeeccCCCCCCCcEEEEEECCCC--eeeE
Q 016751 214 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQT 251 (383)
Q Consensus 214 ~v~~~G~lYw~~~~~~~~~~~~~~~il~fD~~~~--~~~~ 251 (383)
+++++|++|.....+ .++++|..|. .|+.
T Consensus 62 Piv~~g~vyv~t~~~---------~v~AlDa~tG~~lW~~ 92 (560)
T d1kv9a2 62 PLFHDGVIYTSMSWS---------RVIAVDAASGKELWRY 92 (560)
T ss_dssp CEEETTEEEEEEGGG---------EEEEEETTTCCEEEEE
T ss_pred CEEECCEEEEECCCC---------eEEEEeCCCCCEEEEE
Confidence 899999999877665 8999998755 6763
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=80.50 E-value=13 Score=30.25 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=26.0
Q ss_pred CceEEEEEeeccCCCCCCCcEEEEEECCCCeeeEeCCC
Q 016751 218 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMP 255 (383)
Q Consensus 218 ~G~lYw~~~~~~~~~~~~~~~il~fD~~~~~~~~i~lP 255 (383)
+|.|||..... ..|..+|+.+++.+...+|
T Consensus 29 ~~~l~wvDi~~--------~~I~r~d~~~g~~~~~~~~ 58 (295)
T d2ghsa1 29 SGTAWWFNILE--------RELHELHLASGRKTVHALP 58 (295)
T ss_dssp TTEEEEEEGGG--------TEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEECCC--------CEEEEEECCCCeEEEEECC
Confidence 78999987655 5899999999998888888
|