Citrus Sinensis ID: 016762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
MAVQVQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERPPRLSLTAVP
Secondary Structure (PSIPRED)
ccccEEccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHHHcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHccccccccccccccccccEEEEEcccEEEEEcccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccEcccEccEccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccHHHHHHccccEEEEEEcHHcccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHcccccEcccccccccccEEEEEcccEEEcccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccEEEccccccccccccc
Coil and Loop (DISEMBL)
mavqvqlsslwlpsptvtvpfvhcksktkpsttslassaslssslsssapiiqtvggkqsswhggnsnnsngsieaYEEECDWADLDADLYYwtkslrpvqwypghiaKTEKELKDQLKLMDVVIEVRdariplstthplmdqwlgnRKRILVLNREDMISMADRNAWATYFAKQGTKvifsngqlgmgTMKLSRLAKALASDvnvkrrskgllpravragivgypnvgksSLINRLLKrrmcpaaprpgvtRVLKWVRFgkdlefldspgiipmrISDQAAAIKLAICddigersyDVADVAAILVQMLARIPTVGITALQNrykidmdgtcgKTFVQKLALHLFNGDTHQAAFRILTDfrkgkfgwislerpprlsltavp
Flexible Loop (DISEMBL)
mavqvqlsslwlpsptvtVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVggkqsswhggnSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRdariplstthplmdqwlgNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAsdvnvkrrskgllpravragivgypnvgksSLINRLLKrrmcpaaprpgvtrvlkWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKfgwislerpprlsltavp
Low Complexity Region (SEG)
MAVQVQLSSLWLPSPTVTVPFVHCksktkpsttslassaslssslsssapIIQTVGGKQSSWHggnsnnsngsIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERPPRLSLTAVP
Disordered region (IsUnstruct)
*******SSLWLPSPTVTVPFVHC***************************************************AYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISL************
Disordered Region (DISOPRED)
*******************************************************************************************YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG*******RLAKALAS*********GLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERPPR*******
Disordered Region (DISEMBL)
MAVQVQLSSLWLPSPTVTVPFVHC***********************SAPIIQ*************SNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERPPRLSLTAVP
Disordered Region (DISPRO)
*AVQVQLSSLWLPSPTVTVPFVHCK**********************SAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERPPRLS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVQVQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERPPRLSLTAVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
C5D8U8	283	Ribosome biogenesis GTPas	yes	no	0.707	0.957	0.367	1e-44
Q819W8	296	Ribosome biogenesis GTPas	yes	no	0.728	0.942	0.347	3e-44
E0TTS5	282	Ribosome biogenesis GTPas	yes	no	0.702	0.953	0.352	5e-44
O31743	282	Ribosome biogenesis GTPas	yes	no	0.702	0.953	0.352	6e-44
Q65JP4	283	Ribosome biogenesis GTPas	yes	no	0.702	0.950	0.362	4e-43
A8FD69	282	Ribosome biogenesis GTPas	yes	no	0.689	0.936	0.314	6e-42
B7GGD6	284	Ribosome biogenesis GTPas	yes	no	0.707	0.954	0.366	3e-41
D5DJL5	288	Ribosome biogenesis GTPas	yes	no	0.550	0.732	0.382	2e-39
Q9WZM6	262	Ribosome biogenesis GTPas	yes	no	0.647	0.946	0.293	4e-27
P75135	271	Probable ribosome biogene	yes	no	0.644	0.911	0.293	1e-23

>sp|C5D8U8|RBGA_GEOSW Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70) GN=rbgA PE=3 SV=1

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/283 (36%), Positives = 162/283 (57%), Gaps = 12/283 (4%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK ++E++++LKL+D+V E+ DARIPLS+ +P++ + LGN+ RI++LN+ DM
Sbjct: 5   IQWFPGHMAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMIHEILGNKPRIVLLNKADM 64

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAV 218
                   W  YF +Q    +  + Q G G  ++   AK +  D   K  +KG+  PR +
Sbjct: 65  ADETVTEQWIAYFERQQLHALAIDAQTGTGIRQIVSAAKEMLKDKFAKMAAKGIKNPRPM 124

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278
           RA IVG PNVGKS+LINRL  R +     +PGVT+  +W++ GK++E LD+PGI+  +  
Sbjct: 125 RALIVGIPNVGKSTLINRLAGRNIAKTGDKPGVTKAQQWIKVGKEMELLDTPGILWPKFE 184

Query: 279 DQAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKT 336
           D+   +KLA    I +   ++ DVA   +  L +  P      L+ RY + D+ G     
Sbjct: 185 DEEVGLKLATTGAIKDTILNLQDVAVYALNFLKQHYP----ERLKERYSLDDIPGEIVAL 240

Query: 337 F--VQKLALHLFNG---DTHQAAFRILTDFRKGKFGWISLERP 374
           F  + K    L +G   D  + +  +L D R  K G +S E P
Sbjct: 241 FDAIGKRRGCLVSGGAVDYDKVSEIVLHDIRTEKLGRLSFETP 283

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.
Geobacillus sp. (strain WCH70) (taxid: 471223)

>sp|Q819W8|RBGA_BACCR Ribosome biogenesis GTPase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rbgA PE=3 SV=1

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 159/282 (56%), Gaps = 3/282 (1%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +++ ++LKL+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM
Sbjct: 3   IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  YF ++G   I  N Q G G  +++   K L  +   K  +KG+ PRA+R
Sbjct: 63  ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A IVG PNVGKS+LIN+L K+ +     RPGVT   +W++ GK++E LD+PGI+  +  D
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339
           Q   ++LA    I +   ++ DVA   ++ + +     +    N  +I  D       + 
Sbjct: 183 QLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPEDIVELFDAIG 242

Query: 340 KLALHLFNG---DTHQAAFRILTDFRKGKFGWISLERPPRLS 378
           K    L  G   D  + +  +L + R GK G ++ E P    
Sbjct: 243 KNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEEFG 284

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)

>sp|E0TTS5|RBGA_BACPZ Ribosome biogenesis GTPase A OS=Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) GN=rbgA PE=3 SV=1

 Score =  179 bits (453), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 161/284 (56%), Gaps = 15/284 (5%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITALQNRYKID--------MD 330
           +   ++LA+   I +   ++ DVA   ++ L    P      L+ RY +D        + 
Sbjct: 183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYP----ERLKERYALDEIPEDIAELF 238

Query: 331 GTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERP 374
              G+     ++  L N D       I+ D R  KFG +S E+P
Sbjct: 239 DAIGEKRGCLMSGGLINYDKTTEV--IIRDIRTEKFGRLSFEQP 280

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) (taxid: 655816)

>sp|O31743|RBGA_BACSU Ribosome biogenesis GTPase A OS=Bacillus subtilis (strain 168) GN=rbgA PE=1 SV=1

 Score =  178 bits (452), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 161/284 (56%), Gaps = 15/284 (5%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITALQNRYKID--------MD 330
           +   ++LA+   I +   ++ DVA   ++ L    P      L+ RY +D        + 
Sbjct: 183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYP----ERLKERYGLDEIPEDIAELF 238

Query: 331 GTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERP 374
              G+     ++  L N D       I+ D R  KFG +S E+P
Sbjct: 239 DAIGEKRGCLMSGGLINYDKTTEV--IIRDIRTEKFGRLSFEQP 280

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q65JP4|RBGA_BACLD Ribosome biogenesis GTPase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rbgA PE=3 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/284 (36%), Positives = 159/284 (55%), Gaps = 15/284 (5%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              +   AW  +F K G   +  N   G G  ++   +K L  +   K ++KG+ PRA+R
Sbjct: 63  ADSSVTKAWKQHFEKDGIPTLAINSVNGQGLNQILPASKELLKEKFDKMKAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A IVG PNVGKS+LINRL K+ +     RPGVT   +WV+ GK+LE LD+PGI+  +  D
Sbjct: 123 ALIVGIPNVGKSTLINRLAKKNIAKTGDRPGVTTAQQWVKVGKELELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITALQNRYKID--------MD 330
           +   ++LA    I +   ++ DVA   ++ L    P      L+ RY ++        + 
Sbjct: 183 ELVGLRLAATGAIKDSIINLQDVAVYGLRFLEENYP----ERLKKRYDLEEIPEEIAALF 238

Query: 331 GTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERP 374
              GK     +A    N D       I+ D R  KFG +S E+P
Sbjct: 239 DEIGKKRGCLMAGGEINYDKTTEV--IIRDIRTEKFGPLSFEKP 280

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

>sp|A8FD69|RBGA_BACP2 Ribosome biogenesis GTPase A OS=Bacillus pumilus (strain SAFR-032) GN=rbgA PE=3 SV=1

 Score =  171 bits (434), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 158/289 (54%), Gaps = 25/289 (8%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P++++ L N+ +I++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKPKIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  +F +QG + +  N   G G  ++   +K +  +   + ++KG+ PRA+R
Sbjct: 63  ADPRVTKEWQAHFEQQGVRSLAINSVDGQGLNQIITTSKEILKEKFDRMKAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK++E LD+PGI+  +  D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKEMELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339
           +   ++LA+   I +   ++ DVA             G+  L+  Y   +      T + 
Sbjct: 183 EKVGLRLAVTGAIKDSIINLQDVAV-----------YGLRFLEENYPERLKKRYDLTDIP 231

Query: 340 KLALHLFNG--------------DTHQAAFRILTDFRKGKFGWISLERP 374
           +    LF+               +  +    I+ D R  KFG ++ E+P
Sbjct: 232 EDTAELFDAIGTKRGCLMSGGFINYDKTTEIIIRDIRTEKFGPLTFEKP 280

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus pumilus (strain SAFR-032) (taxid: 315750)

>sp|B7GGD6|RBGA_ANOFW Ribosome biogenesis GTPase A OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rbgA PE=3 SV=1

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 158/281 (56%), Gaps = 10/281 (3%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK ++E+ ++LKL+D+V E+ DARIP+S+ +PL+D+ + N+ RI++LN+ DM
Sbjct: 6   IQWFPGHMAKAKREVTEKLKLIDIVFELVDARIPMSSRNPLIDEIVANKPRIILLNKADM 65

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGL-LPRAV 218
                   W  +FA Q    I  + Q G G  ++  +AK        K  +KG+  PRA+
Sbjct: 66  ADPDVTKQWVDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRSKFEKMMAKGMKRPRAM 125

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278
           RA IVG PNVGKS+LINRL  + +      PGVT+  +W++ GK+LE LD+PGI+  +  
Sbjct: 126 RALIVGIPNVGKSTLINRLAGKHIAKTGDTPGVTKAQQWIKVGKELELLDTPGILWPKFE 185

Query: 279 DQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKI-DMDGTCGKTF 337
           D+    KLA    I +   ++ DVA   ++ LA         L+ RY + D+     + F
Sbjct: 186 DEEVGYKLATTGAIKDTILNLQDVAVYALRFLAAYYP---DRLKERYALADIPEDIVQLF 242

Query: 338 --VQKLALHLFNG---DTHQAAFRILTDFRKGKFGWISLER 373
             + K    L  G   D  + A  +L D R  K G +S +R
Sbjct: 243 DDIGKKRGCLAAGGVVDYDKVAELVLRDIRTEKLGRLSFDR 283

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Anoxybacillus flavithermus (strain DSM 21510 / WK1) (taxid: 491915)

>sp|D5DJL5|RBGA_BACMD Ribosome biogenesis GTPase A OS=Bacillus megaterium (strain DSM 319) GN=rbgA PE=3 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 132/212 (62%), Gaps = 1/212 (0%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +++ ++LKL+D+V E+ DARIP S+ +P++D+ + N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVDK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAV 218
                   W  Y+ +QG   +  + Q G G  ++   +K L  +   + R+KG+  PRA+
Sbjct: 63  ADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRAI 122

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278
           RA IVG PNVGKS+LINRL  +++     RPGVT+  +W++ G +LE LD+PGI+  +  
Sbjct: 123 RAMIVGIPNVGKSTLINRLASKKIAKTGDRPGVTQAQQWIKVGNELELLDTPGILWPKFE 182

Query: 279 DQAAAIKLAICDDIGERSYDVADVAAILVQML 310
           D+    KLA    I +   ++ DVA   ++ L
Sbjct: 183 DETVGYKLATTGAIKDTILNMQDVAVYALRFL 214

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus megaterium (strain DSM 319) (taxid: 592022)

>sp|Q9WZM6|RBGA_THEMA Ribosome biogenesis GTPase A OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rbgA PE=1 SV=1

 Score =  122 bits (307), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 137/279 (49%), Gaps = 31/279 (11%)

Query: 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS 161
           WYPGHI K ++++KD L+L++ V+EVRDAR P +T+   +D     ++ I++LN+ D+  
Sbjct: 3   WYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDIAD 60

Query: 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAG 221
                 W  +F KQG +VI ++              K     V +K+ S     R  R  
Sbjct: 61  EKTTKKWVEFFKKQGKRVITTH--------------KGEPRKVLLKKLS---FDRLARVL 103

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQA 281
           IVG PN GKS++IN+L  +R      +PG+T+ ++W      ++ LD+PGI+   I  + 
Sbjct: 104 IVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFSED 163

Query: 282 AAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKL 341
            A KL +   +     +   +     ++ AR  ++GI +  + +  D        F +K 
Sbjct: 164 LAAKLLLVGSLPVERIEDQRIFERAFEIFAR--SIGIESSFSEFFED--------FARKR 213

Query: 342 ALHLFNG--DTHQAAFRILTDFRKGKFGWISLERPPRLS 378
            L    G  D  +A     T+  +GK G +S ERP  ++
Sbjct: 214 GLLKKGGVPDIERALMLFFTEVAQGKAGRVSFERPEDIT 252

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

>sp|P75135|RBGA_MYCPN Probable ribosome biogenesis GTPase A OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=rbgA PE=1 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 134/286 (46%), Gaps = 39/286 (13%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           + W+PGH+ KT  +LK     +D VIEV DAR P  T +P +  +  N+ ++ +  + D+
Sbjct: 10  INWFPGHMKKTHDQLKKLASSLDGVIEVVDARAPTLTQNPEITAYFTNKPKLTLALKADL 69

Query: 160 I-SMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLA-KALASDVNVKR---RSKGL 213
             ++A+ N  W T   KQG              ++L RL  K L +    K+   ++KGL
Sbjct: 70  AQTVANSNILWGTL--KQG--------------LQLKRLVIKKLQTLFQAKKNQLKAKGL 113

Query: 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
           L    R  ++G PNVGKSSLIN LL +     A R GVT+ + W +   +    D+PG+ 
Sbjct: 114 LVHQFRLAVIGMPNVGKSSLINLLLNKNHLQVANRAGVTKSMSWNQISSEFYLSDTPGVF 173

Query: 274 PMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITALQNRYKIDMDGT 332
             RI + A   KL + + I      + DV A     L++  P +          +  +GT
Sbjct: 174 FKRIDEMAVGYKLVLTNVIKREVVPLEDVGAFAFCYLSKHYPQL----------LPYEGT 223

Query: 333 CGKTFVQKLAL--HLFNG----DTHQAAFRILTDFRKGKFGWISLE 372
               F+ K A+   L       + + A    +++   GK+G +S E
Sbjct: 224 DFTEFLHKFAISRKLLQKSNQLNINLACELFVSELINGKYGKLSFE 269

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
359479858	367	PREDICTED: ribosome biogenesis GTPase A-	0.950	0.991	0.765	1e-162
118485967	367	unknown [Populus trichocarpa]	0.942	0.983	0.75	1e-160
224085461	387	predicted protein [Populus trichocarpa]	0.950	0.940	0.746	1e-160
449464824	370	PREDICTED: ribosome biogenesis GTPase A-	0.963	0.997	0.735	1e-158
363807764	391	uncharacterized protein LOC100784201 [Gl	0.945	0.925	0.716	1e-150
255559442	366	Nucleolar GTP-binding protein, putative	0.898	0.939	0.702	1e-149
17644179	372	unknown protein [Arabidopsis thaliana]	0.958	0.986	0.698	1e-147
22328255	372	GTP-binding protein [Arabidopsis thalian	0.958	0.986	0.698	1e-147
297814025	372	GTP-binding family protein [Arabidopsis	0.958	0.986	0.698	1e-146
4263509	375	hypothetical protein [Arabidopsis thalia	0.958	0.978	0.692	1e-145

>gi|359479858|ref|XP_002271564.2| PREDICTED: ribosome biogenesis GTPase A-like [Vitis vinifera] gi|296086696|emb|CBI32331.3| unnamed protein product [Vitis vinifera]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 284/371 (76%), Positives = 313/371 (84%), Gaps = 7/371 (1%)

Query: 5   VQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHG 64
           V L  +W+P+PT++   +   S+ KPSTT+LA++  L+SS +     IQ VGGK    + 
Sbjct: 3   VALCGVWMPNPTLSGNVL--PSQIKPSTTALAATPHLASSST-----IQIVGGKSHGQYV 55

Query: 65  GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
               +SN + E   EE  W +LDADLY+WTK LRP+QWYPGHIAKTEKELK+QLKLMDVV
Sbjct: 56  NGGVSSNRTFEDISEESYWTNLDADLYHWTKKLRPIQWYPGHIAKTEKELKEQLKLMDVV 115

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEV+DARIPLST+HP M+ WLGNRKRILVLNREDMIS  DRNAWATY+A QG KV+FSNG
Sbjct: 116 IEVQDARIPLSTSHPQMESWLGNRKRILVLNREDMISTEDRNAWATYYAMQGIKVVFSNG 175

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           QLGMG+MKLSRLAK LAS VNVKRR+KGLLPR VRAGIVGYPNVGKSSLINRLLKRRMCP
Sbjct: 176 QLGMGSMKLSRLAKTLASGVNVKRRAKGLLPRPVRAGIVGYPNVGKSSLINRLLKRRMCP 235

Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304
           AAPRPGVTR LKWV+FGKDLE LDSPGIIPMRISDQ+AAIKLAICDDIGERSYDVADVAA
Sbjct: 236 AAPRPGVTRQLKWVQFGKDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVADVAA 295

Query: 305 ILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKG 364
           ILVQML RIP VG  AL NRYKID DG CG  FVQKLAL LFNGDTHQAAFRILTDFRKG
Sbjct: 296 ILVQMLTRIPAVGPKALYNRYKIDTDGLCGNIFVQKLALQLFNGDTHQAAFRILTDFRKG 355

Query: 365 KFGWISLERPP 375
           KFGWI+LERPP
Sbjct: 356 KFGWIALERPP 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485967|gb|ABK94828.1| unknown [Populus trichocarpa]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 282/376 (75%), Positives = 310/376 (82%), Gaps = 15/376 (3%)

Query: 5   VQLSSLWLPSPTVTV---PFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQS- 60
           V++  LWLP+P +     PF+H    + P+  SL + ASLSS      P IQ VGGK + 
Sbjct: 3   VEVLGLWLPNPAIRFNRPPFLHL---SPPTRASLVTPASLSSP----PPTIQIVGGKSTP 55

Query: 61  SWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL 120
           SW G  ++   G      EE DW D + DLY+WTK LRPVQWYPGHIAKTEKELK+QLKL
Sbjct: 56  SWQGSGNDVCGGG----GEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKELKEQLKL 111

Query: 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180
           MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWATYFA+QG KV+
Sbjct: 112 MDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQGIKVV 171

Query: 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 240
            SNGQLGMGTMKLSR AK+LA+ VNVKRR KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 172 LSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 231

Query: 241 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 300
           RMCPAAPRPGVTR L+WVRFG DLE LDSPGIIPMRISDQ+AAIKLAICDDIGERSYDV 
Sbjct: 232 RMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVT 291

Query: 301 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 360
           DVAAILVQ+L ++PTVG  AL NRYK+D D  CGK FVQKL++HLFNGDTHQAAFRIL+D
Sbjct: 292 DVAAILVQILTKLPTVGAKALNNRYKMDADDFCGKIFVQKLSVHLFNGDTHQAAFRILSD 351

Query: 361 FRKGKFGWISLERPPR 376
           FRKGKFGW +LERPPR
Sbjct: 352 FRKGKFGWAALERPPR 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085461|ref|XP_002307583.1| predicted protein [Populus trichocarpa] gi|222857032|gb|EEE94579.1| predicted protein [Populus trichocarpa]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 283/379 (74%), Positives = 311/379 (82%), Gaps = 15/379 (3%)

Query: 5   VQLSSLWLPSPTVTV---PFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQS- 60
           V++  LWLP+P +     PF+H    + P+  SL + ASLSS      P IQ VGGK + 
Sbjct: 3   VEVLGLWLPNPAIRFNRPPFLHL---SPPTRASLVTPASLSSP----PPTIQIVGGKSTP 55

Query: 61  SWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL 120
           SW G  ++   G      EE DW D + DLY+WTK LRPVQWYPGHIAKTEKELK+QLKL
Sbjct: 56  SWQGSGNDVCGGG----GEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKELKEQLKL 111

Query: 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180
           MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWATYFA+QG KV+
Sbjct: 112 MDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQGIKVV 171

Query: 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 240
            SNGQLGMGTMKLSR AK+LA+ VNVKRR KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 172 LSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 231

Query: 241 RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVA 300
           RMCPAAPRPGVTR L+WVRFG DLE LDSPGIIPMRISDQ+AAIKLAICDDIGERSYDV 
Sbjct: 232 RMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGERSYDVT 291

Query: 301 DVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTD 360
           DVAAILVQ+L ++PTVG  AL NRYK+D D  CGK FVQKL++HLFNGDTHQAAFRIL+D
Sbjct: 292 DVAAILVQILTKLPTVGAKALNNRYKMDADDFCGKIFVQKLSVHLFNGDTHQAAFRILSD 351

Query: 361 FRKGKFGWISLERPPRLSL 379
           FRKGKFGW +LERPP L L
Sbjct: 352 FRKGKFGWAALERPPSLWL 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464824|ref|XP_004150129.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus] gi|449507918|ref|XP_004163166.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/378 (73%), Positives = 308/378 (81%), Gaps = 9/378 (2%)

Query: 1   MAVQVQLSSLWLPSPTVTVP-FVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQ 59
           M++ +  S  +LP+     P    C+S   PS  SLA SAS+SS      P IQ VGGK 
Sbjct: 1   MSLHIHPSGFFLPNTRTIYPQLFFCRSG--PSPPSLAPSASVSSP----HPTIQIVGGKT 54

Query: 60  SSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLK 119
           S++ G ++     + E  E   DW D +ADLYYWT +LRPVQWYPGHIAKTEKELKDQLK
Sbjct: 55  SNFLGDSTPKGASNNELLE--GDWVDFEADLYYWTNALRPVQWYPGHIAKTEKELKDQLK 112

Query: 120 LMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179
           LMDVVIEVRDARIP+ST+HP MD WLGNR+RILVLNREDMIS ADRNAWATYF +QG KV
Sbjct: 113 LMDVVIEVRDARIPMSTSHPQMDAWLGNRRRILVLNREDMISSADRNAWATYFTRQGIKV 172

Query: 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 239
           +FSNGQ GMGTMKL RLAK LA+DVNVKRR+KGLLPRAVRAGIVGYPNVGKSSLINRLLK
Sbjct: 173 VFSNGQHGMGTMKLGRLAKTLAADVNVKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLK 232

Query: 240 RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDV 299
           RRMCPAAPRPGVTR LKWVRFG DLE LDSPGIIPMRISDQ AAIKLAICDDIGERSY+ 
Sbjct: 233 RRMCPAAPRPGVTRELKWVRFGNDLELLDSPGIIPMRISDQTAAIKLAICDDIGERSYNA 292

Query: 300 ADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILT 359
           ADVAAILVQ+L ++P+VGI  LQ RYK+D  G CG+ FVQKLAL LFNGD HQAAFRIL+
Sbjct: 293 ADVAAILVQILTKLPSVGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILS 352

Query: 360 DFRKGKFGWISLERPPRL 377
           DFRKGKFGW +LERPPR 
Sbjct: 353 DFRKGKFGWTALERPPRF 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807764|ref|NP_001242175.1| uncharacterized protein LOC100784201 [Glycine max] gi|255634965|gb|ACU17841.1| unknown [Glycine max]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/378 (71%), Positives = 308/378 (81%), Gaps = 16/378 (4%)

Query: 3   VQVQLSSLWLP-SPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSS 61
           + VQLSSLW+P SP +   FV       P+    ++SA     LSS +P IQ +G    S
Sbjct: 1   MSVQLSSLWVPNSPPIPQHFV-------PNRGRFSASA-----LSSQSPTIQIIGVGGPS 48

Query: 62  WHGGNSNNSNGS--IEAYEEECD-WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQL 118
           W      N N +   +  + E D W++LD DLY+WTK+LRPVQW+PGHIAK EKELK+QL
Sbjct: 49  WRENGYGNPNNNNLFDGCQGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQL 108

Query: 119 KLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK 178
           KLMDVVIEVRD RIP+ST+HP MD WLGNRKRILVLNREDMIS ADRNAWA YF + GTK
Sbjct: 109 KLMDVVIEVRDGRIPMSTSHPQMDPWLGNRKRILVLNREDMISTADRNAWADYFTRNGTK 168

Query: 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 238
           V+FSNGQLGMGTMKL RLAK LA+DVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL
Sbjct: 169 VVFSNGQLGMGTMKLGRLAKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 228

Query: 239 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYD 298
           KRRMCPAAPRPGVTR L+WVRFGKDLE LDSPGI+PMRISDQ+AAIKLAICDDIGERSYD
Sbjct: 229 KRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYD 288

Query: 299 VADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRIL 358
           VADVAAILVQML+++PTVG  AL  RYKID+D   G+ F++KLA+ +FNGD HQAAFR+L
Sbjct: 289 VADVAAILVQMLSKLPTVGRDALCKRYKIDVDCRDGRIFIEKLAVRVFNGDVHQAAFRVL 348

Query: 359 TDFRKGKFGWISLERPPR 376
            DFRKGKFGW +LERPP+
Sbjct: 349 ADFRKGKFGWTALERPPK 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559442|ref|XP_002520741.1| Nucleolar GTP-binding protein, putative [Ricinus communis] gi|223540126|gb|EEF41703.1| Nucleolar GTP-binding protein, putative [Ricinus communis]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/373 (70%), Positives = 294/373 (78%), Gaps = 29/373 (7%)

Query: 5   VQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHG 64
           VQ+  LW P+ TV V     +S  +  +                   +  +GGK  + +G
Sbjct: 3   VQILGLWSPNYTVCVHLPETRSSNRVHS-------------------VVNIGGKTPTLYG 43

Query: 65  GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
                      A  +E DW  L+ DLYYWTK LRPVQWYPGHIAKTEKELK+QLKLMDVV
Sbjct: 44  ----------NATLDETDWVGLETDLYYWTKPLRPVQWYPGHIAKTEKELKEQLKLMDVV 93

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWA YFA QG K +F+NG
Sbjct: 94  IEVRDARIPLSTTHPQMDSWLGNRKRILVLNREDMISKADRNAWANYFATQGIKAVFANG 153

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           Q GMGT+KLSRLAKALA+ VNVKRR+KGLLPR VRAG+VGYPNVGKSSLINRLLKRRMC 
Sbjct: 154 QFGMGTVKLSRLAKALAASVNVKRRAKGLLPRPVRAGVVGYPNVGKSSLINRLLKRRMCE 213

Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304
           AA RPGVTR LKWVRFG +LE LDSPG++PMRI+DQ+AAIKLAICDDIGERSYDVADVAA
Sbjct: 214 AASRPGVTRELKWVRFGNELELLDSPGMLPMRINDQSAAIKLAICDDIGERSYDVADVAA 273

Query: 305 ILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKG 364
           ILVQML RIP+VG+ AL  RYKID+DG  G+ F+QKLA+ LFNGDTHQAAFRILTDFRKG
Sbjct: 274 ILVQMLTRIPSVGLEALHRRYKIDVDGYNGRIFIQKLAIQLFNGDTHQAAFRILTDFRKG 333

Query: 365 KFGWISLERPPRL 377
           KFGW++LERPPR+
Sbjct: 334 KFGWVALERPPRV 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17644179|gb|AAL38787.1| unknown protein [Arabidopsis thaliana]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/371 (69%), Positives = 300/371 (80%), Gaps = 4/371 (1%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGG 65
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ VGGK  +    
Sbjct: 4   QLAPSPSPSPANVSHFVHHRTFRQ---CTYAVSASLPTANSSRPPPIQIVGGKDLNLDVT 60

Query: 66  NSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
             ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLMDVV
Sbjct: 61  RKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLMDVV 120

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF+NG
Sbjct: 121 IEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIFTNG 180

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           +LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR++C 
Sbjct: 181 KLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRKICA 240

Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304
           AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD  DVA 
Sbjct: 241 AAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFTDVAG 300

Query: 305 ILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKG 364
           ILVQMLARIP VG  AL NRYKI ++G CGK FV+ L L+LF GD+HQAAFRILTDFRKG
Sbjct: 301 ILVQMLARIPEVGAKALYNRYKIQLEGNCGKKFVKTLGLNLFGGDSHQAAFRILTDFRKG 360

Query: 365 KFGWISLERPP 375
           KFG++SLERPP
Sbjct: 361 KFGYVSLERPP 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328255|ref|NP_192188.2| GTP-binding protein [Arabidopsis thaliana] gi|23297397|gb|AAN12960.1| unknown protein [Arabidopsis thaliana] gi|332656830|gb|AEE82230.1| GTP-binding protein [Arabidopsis thaliana]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/371 (69%), Positives = 300/371 (80%), Gaps = 4/371 (1%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGG 65
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ VGGK  +    
Sbjct: 4   QLAPSPSPSPANVSHFVHRRTFRQ---CTYAVSASLPTANSSRPPPIQIVGGKDLNLDVT 60

Query: 66  NSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
             ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLMDVV
Sbjct: 61  RKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLMDVV 120

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF+NG
Sbjct: 121 IEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIFTNG 180

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           +LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR++C 
Sbjct: 181 KLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRKICA 240

Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304
           AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD  DVA 
Sbjct: 241 AAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFTDVAG 300

Query: 305 ILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKG 364
           ILVQMLARIP VG  AL NRYKI ++G CGK FV+ L L+LF GD+HQAAFRILTDFRKG
Sbjct: 301 ILVQMLARIPEVGAKALYNRYKIQLEGNCGKKFVKTLGLNLFGGDSHQAAFRILTDFRKG 360

Query: 365 KFGWISLERPP 375
           KFG++SLERPP
Sbjct: 361 KFGYVSLERPP 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814025|ref|XP_002874896.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297320733|gb|EFH51155.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 259/371 (69%), Positives = 299/371 (80%), Gaps = 4/371 (1%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGG 65
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ VGGK  +    
Sbjct: 4   QLAPSPSPSPANLSHFVHRRTFRQ---CTYAVSASLPTANSSRPPPIQIVGGKDLNLDVT 60

Query: 66  NSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
             ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLMDVV
Sbjct: 61  RKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLMDVV 120

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF+NG
Sbjct: 121 IEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIFTNG 180

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           +LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR++C 
Sbjct: 181 KLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRKICA 240

Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA 304
           AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD  DVA 
Sbjct: 241 AAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFTDVAG 300

Query: 305 ILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKG 364
           ILVQMLARIP VG  AL NRYKI ++G CGK FV  L L+LF GD+HQAAFRILTDFRKG
Sbjct: 301 ILVQMLARIPEVGANALYNRYKIQLEGGCGKKFVTTLGLNLFGGDSHQAAFRILTDFRKG 360

Query: 365 KFGWISLERPP 375
           KFG++SLERPP
Sbjct: 361 KFGYVSLERPP 371

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4263509|gb|AAD15335.1| hypothetical protein [Arabidopsis thaliana] gi|7269764|emb|CAB77764.1| hypothetical protein [Arabidopsis thaliana]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/374 (69%), Positives = 300/374 (80%), Gaps = 7/374 (1%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQT---VGGKQSSW 62
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ    VGGK  + 
Sbjct: 4   QLAPSPSPSPANVSHFVHRRTFRQ---CTYAVSASLPTANSSRPPPIQANIIVGGKDLNL 60

Query: 63  HGGNSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLM 121
                ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLM
Sbjct: 61  DVTRKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLM 120

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 181
           DVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF
Sbjct: 121 DVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIF 180

Query: 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 241
           +NG+LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR+
Sbjct: 181 TNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRK 240

Query: 242 MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVAD 301
           +C AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICDDIGE++YD  D
Sbjct: 241 ICAAAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFTD 300

Query: 302 VAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDF 361
           VA ILVQMLARIP VG  AL NRYKI ++G CGK FV+ L L+LF GD+HQAAFRILTDF
Sbjct: 301 VAGILVQMLARIPEVGAKALYNRYKIQLEGNCGKKFVKTLGLNLFGGDSHQAAFRILTDF 360

Query: 362 RKGKFGWISLERPP 375
           RKGKFG++SLERPP
Sbjct: 361 RKGKFGYVSLERPP 374

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
UNIPROTKB|Q5TKI5	371	OSJNBb0048I21.12 "Os05g0430400	0.785	0.811	0.803	2.4e-131
TAIR|locus:2140270	372	EMB3129 "AT4G02790" [Arabidops	0.845	0.870	0.741	1.1e-128
UNIPROTKB|Q7NEL3	296	glr3866 "Ribosome biogenesis G	0.712	0.922	0.438	1.2e-58
UNIPROTKB|Q720E9	287	LMOf2365_1290 "Ribosome biogen	0.707	0.944	0.358	1.9e-44
UNIPROTKB|Q81WJ8	296	BAS3689 "Ribosome biogenesis G	0.707	0.915	0.351	3.5e-43
TIGR_CMR|BA_3976	296	BA_3976 "GTPase family protein	0.707	0.915	0.351	3.5e-43
UNIPROTKB|O31743	282	rbgA "Ribosome biogenesis GTPa	0.707	0.960	0.351	1.9e-42
UNIPROTKB|Q3AC75	276	CHY_1427 "Ribosome biogenesis	0.699	0.971	0.325	2.8e-34
TIGR_CMR|CHY_1427	276	CHY_1427 "GTP-binding protein"	0.699	0.971	0.325	2.8e-34
UNIPROTKB|Q9BT17	334	MTG1 "Mitochondrial GTPase 1"	0.493	0.565	0.348	5.9e-29

UNIPROTKB|Q5TKI5 OSJNBb0048I21.12 "Os05g0430400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
 Identities = 242/301 (80%), Positives = 268/301 (89%)

Query:    75 EAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL 134
             E Y++E  W +LDADL YWT+SLRPVQWYPGHIAKTEKELK+QLKLMDVVIEVRDARIPL
Sbjct:    70 EDYDKEMFWDNLDADLRYWTRSLRPVQWYPGHIAKTEKELKEQLKLMDVVIEVRDARIPL 129

Query:   135 STTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194
             +T+HP MD WLGNRKRI+V+NREDM+S  DRNAWA+YFA QGTKV++SNGQLGMGTMKL 
Sbjct:   130 ATSHPKMDAWLGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVVYSNGQLGMGTMKLG 189

Query:   195 RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254
             R+AK+LAS VN KRR KGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 
Sbjct:   190 RMAKSLASTVNTKRREKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRE 249

Query:   255 LKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIP 314
             LKWVRFG DLE LDSPGI+PMRISDQ AAIKLAICDDIGERSYD ADVAAILVQ+L R P
Sbjct:   250 LKWVRFGSDLELLDSPGILPMRISDQTAAIKLAICDDIGERSYDFADVAAILVQLLVRHP 309

Query:   315 TVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERP 374
              VG  A + RY++DMD  CGK FV KL++HLFNGD  QAAFRIL+D+RKGKFG ++LERP
Sbjct:   310 AVGPEAFRRRYRLDMDSDCGKMFVTKLSVHLFNGDASQAAFRILSDYRKGKFGCVALERP 369

Query:   375 P 375
             P
Sbjct:   370 P 370

GO:0003924 "GTPase activity" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

TAIR|locus:2140270 EMB3129 "AT4G02790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
 Identities = 241/325 (74%), Positives = 273/325 (84%)

Query:    52 IQTVGGKQSSWHXXXXXXXXXX-IEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKT 110
             IQ VGGK  +             +EA E+E DW +L++D+  WT++LRPVQWYPGHI KT
Sbjct:    47 IQIVGGKDLNLDVTRKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKT 106

Query:   111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWAT 170
             EKEL++QLKLMDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA 
Sbjct:   107 EKELREQLKLMDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWAR 166

Query:   171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGK 230
             YFAKQG KVIF+NG+LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGK
Sbjct:   167 YFAKQGIKVIFTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGK 226

Query:   231 SSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICD 290
             SSLINRLLKR++C AAPRPGVTR +KWV+ GKDL+ LDSPG++PMRI DQAAAIKLAICD
Sbjct:   227 SSLINRLLKRKICAAAPRPGVTREMKWVKLGKDLDLLDSPGMLPMRIDDQAAAIKLAICD 286

Query:   291 DIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHLFNGDT 350
             DIGE++YD  DVA ILVQMLARIP VG  AL NRYKI ++G CGK FV+ L L+LF GD+
Sbjct:   287 DIGEKAYDFTDVAGILVQMLARIPEVGAKALYNRYKIQLEGNCGKKFVKTLGLNLFGGDS 346

Query:   351 HQAAFRILTDFRKGKFGWISLERPP 375
             HQAAFRILTDFRKGKFG++SLERPP
Sbjct:   347 HQAAFRILTDFRKGKFGYVSLERPP 371

GO:0005525 "GTP binding" evidence=IEA;ISS;IBA

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q7NEL3 glr3866 "Ribosome biogenesis GTPase A" [Gloeobacter violaceus PCC 7421 (taxid:251221)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 121/276 (43%), Positives = 178/276 (64%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QWYPGHIAK  ++L +QLK +D+V+EV DARI  S+ H  + +  G R R++VLNR DM
Sbjct:     9 IQWYPGHIAKARRQLAEQLKQVDLVLEVLDARIAHSSRHDEIQKLAGERPRLVVLNRADM 68

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
             I      +W  +FA +G     +N Q G G   + + A+  A  VN +R  +G+ PRAVR
Sbjct:    69 IPQGMLRSWLKWFAARGEAAYPTNAQNGDGVRAVLKAAQQGAVAVNQRRAGRGMRPRAVR 128

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
               ++G+PNVGKS+LINRL+ +R   +A +PGVTR L+WVR    ++ LDSPGI+P R++D
Sbjct:   129 VAVIGFPNVGKSALINRLVGKRAVESAAKPGVTRALRWVRIADVIDLLDSPGILPPRLND 188

Query:   280 QAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339
             Q AA KLAICDDIG+ +Y  + VA +  ++L   P V    L  R+  D      + +++
Sbjct:   189 QRAAAKLAICDDIGQAAYTTSRVATLAAELLT--PLVP-RRLAERFGADPLAVTAEEWLE 245

Query:   340 KLALHLFNGDTHQAAFRILTDFRKGKFGWISLERPP 375
             ++A H ++G+  +AA  +L DFR+G+ G I+LE PP
Sbjct:   246 QVARHKYHGNLDRAAEALLGDFRRGQLGAIALEAPP 281

GO:0003924 "GTPase activity" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|Q720E9 LMOf2365_1290 "Ribosome biogenesis GTPase A" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 101/282 (35%), Positives = 168/282 (59%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +E+ ++LKL+DV+ E+ DARIPLS+++P++++ +  ++R+++LN+ D 
Sbjct:     3 IQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADT 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                     W  YFA++G   +  N Q G G  K+ + A+ L ++   + RSKG+ PRA+R
Sbjct:    63 ADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             A I+G PNVGKS+LINRL K+ +     +PGVT+  +W++ GK LE LD+PGI+  +  D
Sbjct:   123 AMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFED 182

Query:   280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITALQNRYKIDM---DGTCGK 335
             Q    KLA+   I +    + ++A   ++ L +  P      LQN  K++    D     
Sbjct:   183 QEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPD----RLQNWLKVETVSEDPIETL 238

Query:   336 TFV-QKLAL-HLFNG-DTHQAAFRILTDFRKGKFGWISLERP 374
              F+ +K  L   +N  D  +AA  ++ + R+ K G +S + P
Sbjct:   239 AFIAEKRGLLDRYNDPDYSRAAETVVREIRQQKLGRMSFDFP 280

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81WJ8 BAS3689 "Ribosome biogenesis GTPase A" [Bacillus anthracis (taxid:1392)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 99/282 (35%), Positives = 163/282 (57%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +++ ++LKL+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM
Sbjct:     3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                     W  YF ++G   I  N Q G G  +++   K L  +   K  +KG+ PR +R
Sbjct:    63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             A IVG PNVGKS+LIN+L K+ +     RPGVT   +W++ GK++E LD+PGI+  +  D
Sbjct:   123 ALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFED 182

Query:   280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF 337
             +   ++LA    I +   ++ DVA   ++ + +  P      L+ RY + D+     + F
Sbjct:   183 ELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPE----RLKERYNLNDIPEDIVELF 238

Query:   338 --VQKLALHLFNG---DTHQAAFRILTDFRKGKFGWISLERP 374
               + K    L  G   D  + +  +L + R GK G ++ E P
Sbjct:   239 DAIGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETP 280

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_3976 BA_3976 "GTPase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 99/282 (35%), Positives = 163/282 (57%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +++ ++LKL+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM
Sbjct:     3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                     W  YF ++G   I  N Q G G  +++   K L  +   K  +KG+ PR +R
Sbjct:    63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             A IVG PNVGKS+LIN+L K+ +     RPGVT   +W++ GK++E LD+PGI+  +  D
Sbjct:   123 ALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFED 182

Query:   280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITALQNRYKI-DMDGTCGKTF 337
             +   ++LA    I +   ++ DVA   ++ + +  P      L+ RY + D+     + F
Sbjct:   183 ELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPE----RLKERYNLNDIPEDIVELF 238

Query:   338 --VQKLALHLFNG---DTHQAAFRILTDFRKGKFGWISLERP 374
               + K    L  G   D  + +  +L + R GK G ++ E P
Sbjct:   239 DAIGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETP 280

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O31743 rbgA "Ribosome biogenesis GTPase A" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 99/282 (35%), Positives = 162/282 (57%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct:     3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct:    63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D
Sbjct:   123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182

Query:   280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITALQNRYKID-MDGTCGKTF 337
             +   ++LA+   I +   ++ DVA   ++ L    P      L+ RY +D +     + F
Sbjct:   183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPE----RLKERYGLDEIPEDIAELF 238

Query:   338 V---QKLALHLFNG--DTHQAAFRILTDFRKGKFGWISLERP 374
                 +K    +  G  +  +    I+ D R  KFG +S E+P
Sbjct:   239 DAIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQP 280

GO:0003924 "GTPase activity" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|Q3AC75 CHY_1427 "Ribosome biogenesis GTPase A" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 91/280 (32%), Positives = 151/280 (53%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             + WYPGH+ KT+K L  Q+KL+DVV+E+RDARIPLS+ +P +++   N+ RI++ N++D+
Sbjct:     2 INWYPGHMFKTKKALLAQVKLVDVVLEIRDARIPLSSKNPDIEEICKNKPRIVLFNKKDL 61

Query:   160 ISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAV 218
               +             +G        +   G  ++  + + +      K   KGL PR +
Sbjct:    62 ADVEKTEEILKKLPWPEGVYYCLVESKATGGLKEVWNIIEKVYGQYKEKWSGKGLRPRPL 121

Query:   219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278
             R  +VG PNVGKS++INRLLKR +   A +PGVTR ++W++    LE +D+PG++  ++ 
Sbjct:   122 RGMVVGIPNVGKSTVINRLLKRSVKTGA-KPGVTRGVQWIKLSDKLELMDTPGVLWPKLG 180

Query:   279 DQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV 338
             D    +KL     I +    V +VA  L+++L    T       NR+ ++      + + 
Sbjct:   181 DMEVGLKLGATGSISDEVLPVIEVANWLLKILC---TYRKPEFFNRFNLNGSENLNEIY- 236

Query:   339 QKLALH--LF-NG---DTHQAAFRILTDFRKGKFGWISLE 372
             +K+     LF  G   D  + A  IL +FR+G  G  +L+
Sbjct:   237 EKIGRRRGLFLRGEEIDYQKVALVILKEFRQGLLGKYTLD 276

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1427 CHY_1427 "GTP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 91/280 (32%), Positives = 151/280 (53%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             + WYPGH+ KT+K L  Q+KL+DVV+E+RDARIPLS+ +P +++   N+ RI++ N++D+
Sbjct:     2 INWYPGHMFKTKKALLAQVKLVDVVLEIRDARIPLSSKNPDIEEICKNKPRIVLFNKKDL 61

Query:   160 ISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAV 218
               +             +G        +   G  ++  + + +      K   KGL PR +
Sbjct:    62 ADVEKTEEILKKLPWPEGVYYCLVESKATGGLKEVWNIIEKVYGQYKEKWSGKGLRPRPL 121

Query:   219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278
             R  +VG PNVGKS++INRLLKR +   A +PGVTR ++W++    LE +D+PG++  ++ 
Sbjct:   122 RGMVVGIPNVGKSTVINRLLKRSVKTGA-KPGVTRGVQWIKLSDKLELMDTPGVLWPKLG 180

Query:   279 DQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV 338
             D    +KL     I +    V +VA  L+++L    T       NR+ ++      + + 
Sbjct:   181 DMEVGLKLGATGSISDEVLPVIEVANWLLKILC---TYRKPEFFNRFNLNGSENLNEIY- 236

Query:   339 QKLALH--LF-NG---DTHQAAFRILTDFRKGKFGWISLE 372
             +K+     LF  G   D  + A  IL +FR+G  G  +L+
Sbjct:   237 EKIGRRRGLFLRGEEIDYQKVALVILKEFRQGLLGKYTLD 276

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9BT17 MTG1 "Mitochondrial GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 277 (102.6 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 70/201 (34%), Positives = 112/201 (55%)

Query:   101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI 160
             +W+PGH+AK  K+++  LKL+D +IEV DARIPLS  +PL  + LG +  +LVLN+ D+ 
Sbjct:    29 RWFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLA 88

Query:   161 SMADRNAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              + ++     +   +G K VIF+N        ++  +   L    +   R + L    + 
Sbjct:    89 DLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENL-EYCIM 147

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPA-APR----PGVTR-VLKWVRFG-KDLEFL-DSPG 271
               ++G PNVGKSSLIN L ++ +    A R    PG+TR V+  ++   + L FL D+PG
Sbjct:   148 --VIGVPNVGKSSLINSLRRQHLRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPG 205

Query:   272 IIPMRISDQAAAIKLAICDDI 292
             ++  RI      +KLA+C  +
Sbjct:   206 VLAPRIESVETGLKLALCGTV 226

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_V1252	SubName- Full=Putative uncharacterized protein; (387 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00020856	hypothetical protein (483 aa)			•				•		0.725
	gw1.X.4400.1	hypothetical protein (451 aa)				•			•		0.709
	grail3.7955000101	Predicted protein (372 aa)	•								0.497
	eugene3.00031274	aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)	•			•					0.451
	eugene3.160500001	Predicted protein (113 aa)	•								0.451
	fgenesh4_pg.C_scaffold_1424000002	hypothetical protein (780 aa)	•								0.439
	gw1.XVI.341.1	hypothetical protein (185 aa)	•			•					0.402

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	383
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	1e-110
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	1e-100
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	6e-76
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	4e-75
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	2e-30
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	4e-30
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	1e-29
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	8e-22
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	2e-18
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	2e-16
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	1e-10
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	5e-10
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	1e-09
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	2e-09
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-09
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	3e-09
cd00880	161	cd00880, Era_like, E	4e-09
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	8e-09
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	2e-08
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	8e-08
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	7e-07
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	9e-07
cd04163	168	cd04163, Era, E	2e-06
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	4e-06
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	4e-06
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	5e-06
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	6e-06
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	8e-06
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	1e-05
COG1159	298	COG1159, Era, GTPase [General function prediction	2e-05
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-05
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	3e-05
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	9e-05
cd01898	170	cd01898, Obg, Obg GTPase	1e-04
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	1e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	2e-04
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	3e-04
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	3e-04
COG1163	365	COG1163, DRG, Predicted GTPase [General function p	3e-04
PTZ00258	390	PTZ00258, PTZ00258, GTP-binding protein; Provision	6e-04
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	6e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	6e-04
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	6e-04
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	7e-04
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	8e-04
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	0.001
COG0536	369	COG0536, Obg, Predicted GTPase [General function p	0.001
TIGR00437	591	TIGR00437, feoB, ferrous iron transporter FeoB	0.001
cd01896	233	cd01896, DRG, Developmentally Regulated GTP-bindin	0.001
PRK15494	339	PRK15494, era, GTPase Era; Provisional	0.002
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	0.002
cd01878	204	cd01878, HflX, HflX GTPase family	0.002
TIGR03598	178	TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi	0.003
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	0.004
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	0.004

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score =  323 bits (830), Expect = e-110
 Identities = 112/281 (39%), Positives = 173/281 (61%), Gaps = 9/281 (3%)

Query: 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI 160
           QW+PGH+AK  +E+K+ LKL+DVVIEV DARIPLS+ +P++D+ +GN+ R+L+LN+ D+ 
Sbjct: 5   QWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLA 64

Query: 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA 220
                  W  YF +QG K +  N + G G  K+ + AK L  + N +R++KG+ PRA+RA
Sbjct: 65  DPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRA 124

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQ 280
            I+G PNVGKS+LINRL  +++     RPGVT+  +W++ GK LE LD+PGI+  ++ DQ
Sbjct: 125 MIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPKLEDQ 184

Query: 281 AAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQK 340
              +KLA+   I + + D+ +VA   ++ L++        L+ RYK+D         ++ 
Sbjct: 185 EVGLKLALTGAIKDEALDLEEVAIFALEYLSK---HYPERLKERYKLDELPEDILELLEA 241

Query: 341 LALHL------FNGDTHQAAFRILTDFRKGKFGWISLERPP 375
           +A            D  +A+  +L +FR GK G I+LE P 
Sbjct: 242 IARKRGALRKGGEIDYERASELLLNEFRNGKLGKITLETPE 282

Length = 287

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score =  299 bits (768), Expect = e-100
 Identities = 117/279 (41%), Positives = 170/279 (60%), Gaps = 11/279 (3%)

Query: 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI 160
           QW+PGH+AK  +E+K++LKL+DVVIEV DARIPLS+ +P++D+  GN+ R++VLN+ D+ 
Sbjct: 2   QWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLA 61

Query: 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA 220
             A    W  YF ++G K +  N + G G  K+ + AK L  + N K ++KGLL R +RA
Sbjct: 62  DPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLLNRPIRA 121

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQ 280
            IVG PNVGKS+LINRL  +++     RPGVT+  +W++    LE LD+PGI+  +  DQ
Sbjct: 122 MIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPKFEDQ 181

Query: 281 AAAIKLAICDDIGERSYDVADVAAILVQ-MLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339
              +KLA    I + + D+ DVA  L++ +L   P      L+ RYK+D         ++
Sbjct: 182 EVGLKLAATGAIKDEALDLEDVALFLLEYLLEHYP----ELLKERYKLDELPEDIVELLE 237

Query: 340 KLA------LHLFNGDTHQAAFRILTDFRKGKFGWISLE 372
            +A      L     D  +AA  +L DFRKGK G I+LE
Sbjct: 238 AIAKKRGCLLKGGELDLDRAAEILLNDFRKGKLGRITLE 276

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score =  232 bits (593), Expect = 6e-76
 Identities = 87/171 (50%), Positives = 122/171 (71%), Gaps = 1/171 (0%)

Query: 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS 161
           W+PGH+AK  +++K++LKL+DVVIEVRDARIPLS+ +P +D+ LGN+ R++VLN+ D+  
Sbjct: 1   WFPGHMAKALRQIKEKLKLVDVVIEVRDARIPLSSRNPDLDKILGNKPRLIVLNKADLAD 60

Query: 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAG 221
            A    W  YF  QG  V+F N + G G  KL + AK L  + N K ++KGLLPR +RA 
Sbjct: 61  PAKTKKWLKYFKSQGEPVLFVNAKNGKGVKKLLKKAKKLLKE-NEKLKAKGLLPRPLRAM 119

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272
           +VG PNVGKS+LINRL  +++     +PGVTR  +W+R G ++E LD+PGI
Sbjct: 120 VVGIPNVGKSTLINRLRGKKVAKVGNKPGVTRGQQWIRIGPNIELLDTPGI 170

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score =  235 bits (601), Expect = 4e-75
 Identities = 105/293 (35%), Positives = 162/293 (55%), Gaps = 10/293 (3%)

Query: 93  WTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRIL 152
             K    +QW+PGH+ K +++LK+ LK +DVV+EV DAR PL T +P +++ +  + ++L
Sbjct: 7   RLKHYNKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLL 66

Query: 153 VLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSK 211
           VLN+ D+        W  YF K+ G K IF + +   G  K+ +  + L+ +   + + K
Sbjct: 67  VLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKK 126

Query: 212 GLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271
           GLL R +R G+VGYPNVGKS+LINRLL +++   + RPG T+ ++W++    +  LD+PG
Sbjct: 127 GLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPG 186

Query: 272 IIPMRI-SDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKI-DM 329
           IIP +   D+   +KLA   +I +      +VA  L+  L      G      RY+   +
Sbjct: 187 IIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGLLIDEHYGEKLNITRYESNPI 246

Query: 330 DGTCGKTFVQKLA----LHLFNG---DTHQAAFRILTDFRKGKFGWISLERPP 375
             T  + F++ +A      L  G   D  +AA  IL D R GK GW SLE P 
Sbjct: 247 HRTDPEEFLELIAKKRGWLLLKGGEPDLERAAETILKDIRNGKLGWFSLEEPE 299

Length = 322

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score =  113 bits (286), Expect = 2e-30
 Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 22/172 (12%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQW---LGNRKR-ILVLNREDMISMADRNAWATYFAKQGT 177
           DV++EV DAR PL    P +++    LG  K+ +LVLN+ D++   +   W  Y   +  
Sbjct: 1   DVILEVLDARDPLGCRCPQVERAVLVLGPNKKLVLVLNKIDLVPKENVEKWLKYLRNEFP 60

Query: 178 KVIF------SNGQLGMGTMK------LSRLAKALASDVNVK-----RRSKGLLPRAVRA 220
            V F          L   + K      L   +  L +D  +K      R+KG+   ++  
Sbjct: 61  TVAFKASTQQQKKNLSRKSKKVKASDDLLSSSACLGADALLKLLKNYARNKGI-KTSITV 119

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272
           G+VGYPNVGKSS+IN L + R C     PGVT+ ++ V   K ++ LDSPG+
Sbjct: 120 GVVGYPNVGKSSVINSLKRSRACNVGATPGVTKSMQEVHLDKHVKLLDSPGV 171

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score =  112 bits (283), Expect = 4e-30
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 16/160 (10%)

Query: 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ 175
           +K  DVV+EV DAR P  T    +++      +K I+VLN+ D++       W   F  +
Sbjct: 9   IKEADVVLEVVDARDPELTRSRKLERMALELGKKLIIVLNKADLVPREVLEKWKEVFESE 68

Query: 176 GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLIN 235
           G  V++ + +  +GT  L R  K LA D            + V  G+VGYP VGKSS+IN
Sbjct: 69  GLPVVYVSARERLGTRILRRTIKELAIDG-----------KPVIVGVVGYPKVGKSSIIN 117

Query: 236 RLLKRRMCPAAP---RPGVTRVLKWVRFGKDLEFLDSPGI 272
            L  R     +P    PG T+ ++ VR    +  +D+PG+
Sbjct: 118 ALKGRHSASTSPIPGSPGYTKGIQLVRIDSKIYLIDTPGV 157

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score =  111 bits (279), Expect = 1e-29
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 11/154 (7%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQ--WLGNRKRILVLNREDMISMADRNAWATYFAK-QGTK 178
           DVV+EV DAR PLS+ +P ++      N+K I+VLN+ D++       W    ++  GTK
Sbjct: 1   DVVVEVVDARDPLSSRNPDIEVLINEKNKKLIMVLNKADLVPKEVLRKWVAELSELYGTK 60

Query: 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 238
             F +   G G +KL             K++ K    + +R G+VG PNVGKSS IN LL
Sbjct: 61  TFFISATNGQGILKLKAEIT--------KQKLKLKYKKGIRVGVVGLPNVGKSSFINALL 112

Query: 239 KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272
            +        PG T++ + V+  K++   D+PGI
Sbjct: 113 NKFKLKVGSIPGTTKLQQDVKLDKEIYLYDTPGI 146

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 90.4 bits (225), Expect = 8e-22
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 19/159 (11%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKR----ILVLNREDMISMADRNAWATYFAKQGT 177
           DV+I+V DAR P+ T    ++++L   K     I VLN+ D++       W    +K+  
Sbjct: 10  DVIIQVLDARDPMGTRCKHVEKYLRKEKPHKHLIFVLNKCDLVPTWVTKRWVKVLSKEYP 69

Query: 178 KVIFS---NGQLGMGT-MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSL 233
            + F        G G  + L R    L SD            + +  G +GYPNVGKSS+
Sbjct: 70  TLAFHASITNPFGKGALINLLRQFAKLHSD-----------KKQISVGFIGYPNVGKSSV 118

Query: 234 INRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272
           IN L  +++C  AP PG T+V +++   K +  +D PG+
Sbjct: 119 INTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 80.7 bits (200), Expect = 2e-18
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 34/156 (21%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGT 177
           DVV+++ DAR PL    P +++++     +++ +L+LN+ D+++   R AWA YF K+G 
Sbjct: 13  DVVVQIVDARNPLFFRCPDLEKYVKEVDPSKENVLLLNKADLVTEEQRKAWARYFKKEGI 72

Query: 178 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 237
            V+F            S L +A                     G+VGYPNVGKSSLIN L
Sbjct: 73  VVLFF-----------SALNEATI-------------------GLVGYPNVGKSSLINAL 102

Query: 238 LKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
           +  +    +  PG T+  + +     +   D PG++
Sbjct: 103 VGSKKVSVSSTPGKTKHFQTIFLEPGITLCDCPGLV 138

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPMR 276
           R  +VG PNVGKS+LIN L   ++   +  PG TR         G+ +  +D+PG+I   
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLIEGA 60

Query: 277 ISDQAAAIKLAICDDIGERSYDVADVAAILV 307
              +         + I E     AD+  ++V
Sbjct: 61  SEGKGVEGFNRFLEAIRE-----ADLILLVV 86

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 14/78 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGIIPM- 275
           IVG PNVGKS+L NRL  RR    +  PGVTR       +W   G++   +D+ GI P  
Sbjct: 2   IVGRPNVGKSTLFNRLTGRRDAIVSDTPGVTRDRKYGEAEW--GGREFILIDTGGIEPDD 59

Query: 276 -----RISDQA-AAIKLA 287
                 I +QA  AI+ A
Sbjct: 60  EGISKEIREQAEIAIEEA 77

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 17/160 (10%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179
           DV++ V D R  ++     + + L    +  ILV+N+ D +   +    A  F   G   
Sbjct: 85  DVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEEL---AYEFYSLGFGE 141

Query: 180 IF----SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLIN 235
                  +G+ G+G + L  + + L  D   +   +      ++  I+G PNVGKSSLIN
Sbjct: 142 PVPISAEHGR-GIGDL-LDAVLELLPPDEEEEEEEE---TDPIKIAIIGRPNVGKSSLIN 196

Query: 236 RLLKRRMCPAAPRPGVTR---VLKWVRFGKDLEFLDSPGI 272
            +L       +   G TR    +++ R G+    +D+ GI
Sbjct: 197 AILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGI 236

Length = 444

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 59.0 bits (144), Expect = 1e-09
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 14/78 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI---- 272
           IVG PNVGKS+L NRL  +R    +  PGVTR       +W   G++   +D+ GI    
Sbjct: 4   IVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW--GGREFILIDTGGIEEDD 61

Query: 273 --IPMRISDQA-AAIKLA 287
             +  +I +QA  AI+ A
Sbjct: 62  DGLDKQIREQAEIAIEEA 79

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 58.2 bits (142), Expect = 2e-09
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKR----ILVLNREDMISMADRNAWATYFAKQG- 176
           DV++ V D R  L+     + +WL  RK     ILV N+ D          A  F   G 
Sbjct: 80  DVILFVVDGREGLTPEDEEIAKWL--RKSGKPVILVANKIDGKKEDAV---AAEFYSLGF 134

Query: 177 TKVIF---SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSL 233
            + I     +G+ G+G + L  + + L  +   +    G     ++  I+G PNVGKS+L
Sbjct: 135 GEPIPISAEHGR-GIGDL-LDAILELLPEEEEEEEEEDG----PIKIAIIGRPNVGKSTL 188

Query: 234 INRLLKRRMCPAAPRPGVTR----VLKWVRFGKDLEFLDSPGI 272
           +N LL       +   G TR    +  + R GK    +D+ GI
Sbjct: 189 VNALLGEERVIVSDIAGTTRDSIDIP-FERNGKKYTLIDTAGI 230

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGIIPM 275
            +VG   VGKSSL+N LL   +   +  PG TR     V +  +    L  +D+PG+   
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 276 RISDQAAAIKLAI 288
               +    +L +
Sbjct: 61  GGLGREELARLLL 73

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGIIP 274
           IVG PNVGKS+L NRL  RR+   +  PGVTR       +W   G++   +D+ G+  
Sbjct: 8   IVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW--LGREFILIDTGGLDD 63

Length = 444

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 31/128 (24%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGII- 273
            I G PNVGKSSL+N LL + +   +P PG TR    VR          +  +D+PG+  
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRD--PVRKEWELLPLGPVVLIDTPGLDE 58

Query: 274 -----PMRIS------DQAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITAL 321
                  R+       D+A  + L +  D+     +     A L  +  R  P + +   
Sbjct: 59  EGGLGRERVEEARQVADRADLVLLVVDSDLTPVEEE-----AKLGLLRERGKPVLLV--- 110

Query: 322 QNRYKIDM 329
            N  KID+
Sbjct: 111 LN--KIDL 116

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 56.6 bits (138), Expect = 8e-09
 Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 14/78 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI---- 272
           IVG PNVGKS+L NRL  +R    A  PGVTR       +W   G++   +D+ GI    
Sbjct: 6   IVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW--LGREFILIDTGGIEPDD 63

Query: 273 --IPMRISDQA-AAIKLA 287
                +I +QA  AI+ A
Sbjct: 64  DGFEKQIREQAELAIEEA 81

Length = 435

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR----VLKWVRFGKDLEFLDSPGI 272
            ++  I+G PNVGKSSL+N LL       +   G TR    V  +   G+    +D+ GI
Sbjct: 2   PIKIAIIGRPNVGKSSLLNALLGEERVIVSDIAGTTRDSIDVP-FEYDGQKYTLIDTAGI 60

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 53.5 bits (130), Expect = 8e-08
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKR-RMCPAAPRPGVTR--V-LKWVRFGKDLEFLDSP 270
              ++  I+G PNVGKSSLIN LL   R+   +   G TR  +   + R G+    +D+ 
Sbjct: 171 DEPIKIAIIGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDTPFERDGQKYTLIDTA 229

Query: 271 GI 272
           GI
Sbjct: 230 GI 231

Length = 435

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 30/151 (19%)

Query: 145 LGNRKRILVLNREDMISMADR----NAWAT-YFAKQGTK---VIFSNGQLGMGTMKLSRL 196
           +G    +LV N+ D++  +        W      + G K   +I  + + G G  +L   
Sbjct: 88  VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDK 147

Query: 197 AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK-----RRMCPAAPRPGV 251
            K   +  +V               +VG  NVGKSSLIN+LLK     + +   +P PG 
Sbjct: 148 IKKARNKKDVY--------------VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGT 193

Query: 252 TRVLKWVRFGKDLEFLDSPGIIPMRISDQAA 282
           T  L  +         D+PGII    S Q A
Sbjct: 194 TLDLIEIPLDDGHSLYDTPGIIN---SHQMA 221

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 222 IVGYPNVGKSSLINRLLKR--------RMCPAA---PRPGVTRVLKWVRFGKDLEFLDSP 270
           +VG  NVGKS+LIN LLK          +       P PG T  L  +  G+  +  D+P
Sbjct: 130 VVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGLIKIPLGEGKKLYDTP 189

Query: 271 GI 272
           GI
Sbjct: 190 GI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|206726 cd04163, Era, E

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 6/61 (9%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGKD--LEFLDSPGI 272
           ++G   I+G PNVGKS+L+N L+ +++   +P+P  TR  ++ +    D  + F+D+PGI
Sbjct: 2   KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGI 61

Query: 273 I 273
            
Sbjct: 62  H 62

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           IVG PNVGKS+L+NR+L RR       PGVTR
Sbjct: 280 IVGRPNVGKSTLVNRILGRREAVVEDTPGVTR 311

Length = 712

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           +VG PNVGKS+L+NR+L RR       PGVTR
Sbjct: 43  VVGRPNVGKSTLVNRILGRREAVVEDVPGVTR 74

Length = 472

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 222 IVGYPNVGKSSLINRLLKR-RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271
             G  NVGKSSLIN L  R ++   +  PG T+++ +   G     +D PG
Sbjct: 4   FAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPG 54

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGI 272
           +VG  + GKS+L+N LL   + P    P  T V+  +R+G  K +  +D+PG+
Sbjct: 5   VVGEFSAGKSTLLNALLGEEVLPTGVTP-TTAVITVLRYGLLKGVVLVDTPGL 56

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 223 VGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271
            G  NVGKSSLIN L  ++ +   +  PG T+++ +     +L  +D PG
Sbjct: 30  AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPG 79

Length = 200

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 16/64 (25%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA---PRPGVTR-VLKWVRFGKDLEFLDSPGIIPMRI 277
           I G PNVGKSSL+N L  R     A      G TR V++      DL      G IP+R+
Sbjct: 8   IAGKPNVGKSSLLNALAGR---DRAIVSDIAGTTRDVIE-EEI--DLG-----G-IPVRL 55

Query: 278 SDQA 281
            D A
Sbjct: 56  IDTA 59

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGKD-LEFLDSPGI 272
           ++    I+G PNVGKS+L+N L+ +++   +P+P  TR  +   V      + F+D+PGI
Sbjct: 5   KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGI 64

Length = 298

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGKDLEF--LDSPGII-- 273
            IVG PNVGKS+L+NRLL  ++     +PG TR          GK  +F  LD+ G    
Sbjct: 5   VIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY 64

Query: 274 -PMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGT 332
             +R     A        DI     DV ++     + +      G+  +    KID+   
Sbjct: 65  DAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLRDA 124

Query: 333 CGKTFVQKLALHL 345
             KT V  L   L
Sbjct: 125 KLKTHVAFLFAKL 137

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274
           G+VG PNVGKS+L++  L       A  P  T       F    G D++ +D PG++ 
Sbjct: 1   GLVGLPNVGKSTLLS-ALTSAKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPGLLD 57

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272
           + +   +VG PNVGK++L N L           PGVT   K  +    G ++E +D PG 
Sbjct: 2   KKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGT 60

Length = 653

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 29/71 (40%)

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRP--------------GVTRVLKWVRFGKDLE 265
            G+VG PN GKS+L++ +       +  +P              GV      VR      
Sbjct: 3   VGLVGLPNAGKSTLLSAI-------SNAKPKIADYPFTTLVPNLGV------VRVDDGRS 49

Query: 266 FL--DSPGIIP 274
           F+  D PG+I 
Sbjct: 50  FVIADIPGLIE 60

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 42.7 bits (102), Expect = 1e-04
 Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 3/38 (7%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           ++G   IVG PNVGKS+L+N L+ +++   +P+P  TR
Sbjct: 4   KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR 41

Length = 292

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 43.2 bits (103), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA---PRPGVTR 253
           I G PNVGKSSL+N LL       A      G TR
Sbjct: 220 IAGRPNVGKSSLLNALLGEE---RAIVTDIAGTTR 251

Length = 449

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGKDLEFLDSPGI 272
              I+G PNVGKS+L+N+L  +++   +P+   TR             + F+D+PG 
Sbjct: 2   FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGF 58

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 12/58 (20%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPR----PGVTRVLKWVRF---GKDLEFLDSPGI 272
           +VG PNVGK++L N L   R      +    PGVT   K   F   GK++E +D PG 
Sbjct: 2   LVGNPNVGKTTLFNALTGARQ-----KVGNWPGVTVEKKEGEFKLGGKEIEIVDLPGT 54

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only]

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 22/103 (21%)

Query: 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPR-------AVRAGIVGYPNVGKSSLINRLL 238
           +G+   KL+ L + L      K +S G                +VG+P+VGKS+L+N+L 
Sbjct: 28  IGLLKAKLAELREELEKR---KSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLT 84

Query: 239 KRRMCPAA-------PRPGVTRVLKWVRFGKDLEFLDSPGIIP 274
             +   A        P PG   +L++   G  ++ LD PGII 
Sbjct: 85  NTKSEVADYPFTTLEPVPG---MLEYK--GAQIQLLDLPGIIE 122

Length = 365

>gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 197 AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249
                  V + R    L     + GIVG PNVGKS+  N  L ++  PA   P
Sbjct: 6   KMEEEKKVLLGRPGNNL-----KMGIVGLPNVGKSTTFN-ALCKQQVPAENFP 52

Length = 390

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score = 41.3 bits (98), Expect = 6e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 17/63 (26%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGV------TRV--LKWVRFGKDLEFL--DSP 270
           G+VG PN GKS+LI+ +       +A +P +      T V  L  VR      F+  D P
Sbjct: 161 GLVGLPNAGKSTLISAV-------SAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIP 213

Query: 271 GII 273
           G+I
Sbjct: 214 GLI 216

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 10/61 (16%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRFGKDLEFLDSPGIIPMRISDQ 280
           I+G PNVGKSSL+N LL R         G TR V++        E ++  G IP+R+ D 
Sbjct: 222 IIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIE--------EDINLNG-IPVRLVDT 272

Query: 281 A 281
           A
Sbjct: 273 A 273

Length = 454

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 14/59 (23%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTR-------VLKWVRFGKDLEFLDSPGI 272
           I GYPNVGKSSL+N+L + +  P  AP P  T+         K++R+    + +D+PGI
Sbjct: 5   IAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRW----QVIDTPGI 57

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score = 40.8 bits (97), Expect = 7e-04
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 25/68 (36%)

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRP--------------GVTRVLKWVRFGKDLE 265
            G+VG PN GKS+LI+ +       +A +P              GV RV       K   
Sbjct: 161 VGLVGLPNAGKSTLISAV-------SAAKPKIADYPFTTLHPNLGVVRVDD----YKSFV 209

Query: 266 FLDSPGII 273
             D PG+I
Sbjct: 210 IADIPGLI 217

Length = 335

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score = 40.9 bits (97), Expect = 8e-04
 Identities = 10/18 (55%), Positives = 16/18 (88%)

Query: 220 AGIVGYPNVGKSSLINRL 237
            G+VG+PNVGKS+L++ +
Sbjct: 161 VGLVGFPNVGKSTLLSVV 178

Length = 424

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 14/163 (8%)

Query: 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNR-EDMISMADRNAWATYFAK 174
           + L D V+ V D ++ L++T   + + L    +  +L +N+ +D  S  D    A  F K
Sbjct: 352 VSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD----AAEFWK 407

Query: 175 QGTKVIFS-NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAV-RAGIVGYPNVGKSS 232
            G    +  +   G G   L  L +AL S    ++ S  L P  + R  +VG PNVGKSS
Sbjct: 408 LGLGEPYPISAMHGRGVGDL--LDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSS 465

Query: 233 LINRLLKRRMCPAAPRPGVTR--VLKWVRF-GKDLEFLDSPGI 272
           L+N+L            G TR  V + V   G+D  F+D+ GI
Sbjct: 466 LLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGI 508

Length = 712

>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only]

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 25/69 (36%)

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRP--------------GVTRVLKWVRFGKDLE 265
            G+VG PN GKS+L++ +       +A +P              GV RV      G+   
Sbjct: 162 VGLVGLPNAGKSTLLSAV-------SAAKPKIADYPFTTLVPNLGVVRVDG----GESFV 210

Query: 266 FLDSPGIIP 274
             D PG+I 
Sbjct: 211 VADIPGLIE 219

Length = 369

>gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 224 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272
           G PNVGKS+L N L           PGVT   K  +    G+D+E +D PGI
Sbjct: 1   GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGI 51

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591

>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 12/62 (19%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRVLKWVRFGKDLEFLDSPG 271
           R  +VG+P+VGKS+L+++L   +   AA         PGV    K    G  ++ LD PG
Sbjct: 2   RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGV-MEYK----GAKIQLLDLPG 56

Query: 272 II 273
           II
Sbjct: 57  II 58

The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233

>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRFGKDLEFL--DSPGI 272
           + V   I+G PN GKS+L+NR++  ++    P+   TR ++  +   KD + +  D+PGI
Sbjct: 51  KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGI 110

Query: 273 IPMRISDQAAAIKLA 287
              + S + A ++ A
Sbjct: 111 FEPKGSLEKAMVRCA 125

Length = 339

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 223 VGYPNVGKSSLINRLLKRRMCPAAPR----PGVTRVLKWVRF---GKDLEFLDSPGI 272
           VG PNVGK++L N L   R           PGVT   K   F   G ++E +D PG 
Sbjct: 6   VGNPNVGKTTLFNALTGARQ-----HVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGT 57

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|206666 cd01878, HflX, HflX GTPase family

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 192 KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 237
           ++++L K L       ++   RR +  +P      +VGY N GKS+L N L
Sbjct: 14  RIAKLRKELEKVKKQRELQRARRKRSGVPTV---ALVGYTNAGKSTLFNAL 61

HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204

>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPR----PGVTRVLKWVRFGKDLEFLDSPG 271
             G  NVGKSSLIN L  R+      R    PG T+++ +         +D PG
Sbjct: 23  FAGRSNVGKSSLINALTNRK---KLARTSKTPGRTQLINFFEVNDGFRLVDLPG 73

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 2/23 (8%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRL 237
           PR  R  +VG PNVGKSSL+N+L
Sbjct: 211 PR--RVALVGKPNVGKSSLLNKL 231

Length = 472

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 18/88 (20%)

Query: 151 ILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRS 210
           ++VLN+ D++   +       + K G  V+  + + G G   L  L + L    +V    
Sbjct: 37  VIVLNKADLVDDEELEELLEIYEKLGYPVLAVSAKTGEG---LDELRELLKGKTSV---- 89

Query: 211 KGLLPRAVRAGIVGYPNVGKSSLINRLL 238
                      +VG   VGKS+L+N LL
Sbjct: 90  -----------LVGQSGVGKSTLLNALL 106

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
PRK09563	287	rbgA GTPase YlqF; Reviewed	100.0
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	100.0
COG1161	322	Predicted GTPases [General function prediction onl	100.0
KOG2484	435	consensus GTPase [General function prediction only	100.0
COG2262	411	HflX GTPases [General function prediction only]	100.0
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	100.0
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	100.0
KOG2423	572	consensus Nucleolar GTPase [General function predi	100.0
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	100.0
PRK11058	426	GTPase HflX; Provisional	100.0
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	100.0
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.96
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.95
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.95
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.95
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.92
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.92
COG1160	444	Predicted GTPases [General function prediction onl	99.92
PRK13796	365	GTPase YqeH; Provisional	99.9
KOG0410	410	consensus Predicted GTP binding protein [General f	99.9
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.9
PRK12289	352	GTPase RsgA; Reviewed	99.89
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.87
PRK12288	347	GTPase RsgA; Reviewed	99.82
PRK00098	298	GTPase RsgA; Reviewed	99.82
PRK03003	472	GTP-binding protein Der; Reviewed	99.81
PRK00093	435	GTP-binding protein Der; Reviewed	99.81
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.81
PF13167	95	GTP-bdg_N: GTP-binding GTPase N-terminal	99.8
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.78
COG1162	301	Predicted GTPases [General function prediction onl	99.68
PRK01889	356	GTPase RsgA; Reviewed	99.63
COG1084	346	Predicted GTPase [General function prediction only	99.55
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.49
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.48
COG1159	298	Era GTPase [General function prediction only]	99.47
COG0486	454	ThdF Predicted GTPase [General function prediction	99.44
COG1160	444	Predicted GTPases [General function prediction onl	99.41
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.39
COG0218	200	Predicted GTPase [General function prediction only	99.34
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.28
PTZ00258	390	GTP-binding protein; Provisional	99.21
PRK12298	390	obgE GTPase CgtA; Reviewed	99.21
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.21
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.21
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.17
PRK09601	364	GTP-binding protein YchF; Reviewed	99.17
COG1163	365	DRG Predicted GTPase [General function prediction	99.15
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.12
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.12
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.11
PRK12299	335	obgE GTPase CgtA; Reviewed	99.08
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.08
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.07
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.06
PRK12296	500	obgE GTPase CgtA; Reviewed	99.05
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.05
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.03
PRK12297	424	obgE GTPase CgtA; Reviewed	99.03
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.02
PRK15494	339	era GTPase Era; Provisional	98.98
PRK04213	201	GTP-binding protein; Provisional	98.97
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.97
PRK00089	292	era GTPase Era; Reviewed	98.96
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.96
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.94
PRK09602	396	translation-associated GTPase; Reviewed	98.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.91
PRK03003	472	GTP-binding protein Der; Reviewed	98.9
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.9
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.89
COG0536	369	Obg Predicted GTPase [General function prediction	98.88
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.86
PRK00093	435	GTP-binding protein Der; Reviewed	98.84
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.83
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.83
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.82
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.82
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.81
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.81
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.81
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.8
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.75
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.75
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.75
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.73
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.69
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.68
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.65
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.61
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.61
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.61
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.61
PRK09866	741	hypothetical protein; Provisional	98.55
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.55
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.52
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.52
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.52
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.47
COG3596	296	Predicted GTPase [General function prediction only	98.46
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.43
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.42
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.4
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.39
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.38
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.38
PLN03118	211	Rab family protein; Provisional	98.38
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.38
cd00881	189	GTP_translation_factor GTP translation factor fami	98.37
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.37
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.37
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.37
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.36
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.36
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.35
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.35
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.35
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.34
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.34
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.34
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.33
KOG1249	572	consensus Predicted GTPases [General function pred	98.31
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.31
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.3
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.3
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.28
PRK12317	425	elongation factor 1-alpha; Reviewed	98.27
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.27
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.27
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.26
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.26
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.25
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.24
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.24
COG1159	298	Era GTPase [General function prediction only]	98.24
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.24
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.24
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.24
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.24
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.23
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.23
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.22
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.22
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.22
CHL00071	409	tufA elongation factor Tu	98.22
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.22
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.22
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.22
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.21
cd00881	189	GTP_translation_factor GTP translation factor fami	98.21
COG0486	454	ThdF Predicted GTPase [General function prediction	98.21
PRK12296	500	obgE GTPase CgtA; Reviewed	98.2
PRK09866	741	hypothetical protein; Provisional	98.19
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.19
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.19
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.19
PRK00089	292	era GTPase Era; Reviewed	98.18
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.17
KOG2486	320	consensus Predicted GTPase [General function predi	98.17
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.17
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.17
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.16
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.16
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.16
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.16
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.16
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.15
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.15
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.14
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.14
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.13
PRK13768	253	GTPase; Provisional	98.13
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.13
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.12
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.12
PRK12299	335	obgE GTPase CgtA; Reviewed	98.12
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.12
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.11
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.11
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.11
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.11
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.09
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.09
PRK12735	396	elongation factor Tu; Reviewed	98.09
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.09
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.09
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.08
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.08
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.08
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.08
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.08
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.08
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.07
PRK15494	339	era GTPase Era; Provisional	98.07
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.06
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.05
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.04
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.03
COG2262	411	HflX GTPases [General function prediction only]	98.03
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.03
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.02
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.02
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.01
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.01
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.01
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.0
PRK05306	787	infB translation initiation factor IF-2; Validated	98.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	97.99
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	97.98
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.98
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.98
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.98
PRK00007	693	elongation factor G; Reviewed	97.98
PTZ00099	176	rab6; Provisional	97.97
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	97.97
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	97.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	97.96
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	97.95
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	97.95
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	97.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	97.95
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.94
PLN03127	447	Elongation factor Tu; Provisional	97.94
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	97.93
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	97.93
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	97.92
cd01881	176	Obg_like The Obg-like subfamily consists of five w	97.92
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	97.92
PRK12298	390	obgE GTPase CgtA; Reviewed	97.92
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	97.92
PLN03110	216	Rab GTPase; Provisional	97.92
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	97.91
PRK04000	411	translation initiation factor IF-2 subunit gamma;	97.91
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	97.91
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	97.91
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	97.91
PRK00049	396	elongation factor Tu; Reviewed	97.9
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.9
PTZ00133	182	ADP-ribosylation factor; Provisional	97.9
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	97.9
CHL00189	742	infB translation initiation factor 2; Provisional	97.9
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	97.9
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.89
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.88
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	97.88
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.88
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.88
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.88
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	97.87
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	97.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.86
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	97.86
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	97.85
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.85
PTZ00369	189	Ras-like protein; Provisional	97.85
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	97.85
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	97.84
PRK12739	691	elongation factor G; Reviewed	97.84
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	97.83
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	97.82
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	97.82
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	97.82
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.81
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	97.81
PLN03108	210	Rab family protein; Provisional	97.81
PRK04004	586	translation initiation factor IF-2; Validated	97.81
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.81
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	97.81
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	97.81
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	97.81
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	97.8
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.8
TIGR00485	394	EF-Tu translation elongation factor TU. This align	97.8
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	97.79
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	97.79
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	97.79
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.79
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	97.78
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	97.78
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	97.77
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.77
PRK12736	394	elongation factor Tu; Reviewed	97.77
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.77
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	97.77
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.76
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.76
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.76
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.76
PLN03126	478	Elongation factor Tu; Provisional	97.76
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.76
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.76
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.75
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	97.74
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.73
PRK05433	600	GTP-binding protein LepA; Provisional	97.73
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.73
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.73
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	97.72
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	97.71
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	97.71
PRK12297	424	obgE GTPase CgtA; Reviewed	97.71
PLN00223	181	ADP-ribosylation factor; Provisional	97.71
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	97.71
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	97.71
PLN00223	181	ADP-ribosylation factor; Provisional	97.71
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	97.71
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.7
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.7
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	97.69
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	97.69
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	97.69
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	97.69
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.68
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.68
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.68
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.68
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	97.68
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	97.68
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.67
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	97.67
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	97.67
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	97.66
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.66
PRK11058	426	GTPase HflX; Provisional	97.66
COG1100	219	GTPase SAR1 and related small G proteins [General	97.66
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.66
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	97.66
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	97.65
PLN03118	211	Rab family protein; Provisional	97.64
PRK04213	201	GTP-binding protein; Provisional	97.64
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.63
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	97.63
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.62
PRK12736	394	elongation factor Tu; Reviewed	97.62
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.61
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	97.61
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.61
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.61
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.6
COG0218	200	Predicted GTPase [General function prediction only	97.6
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.6
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	97.59
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	97.59
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.59
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	97.58
PTZ00133	182	ADP-ribosylation factor; Provisional	97.58
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.58
PRK12317	425	elongation factor 1-alpha; Reviewed	97.58
smart00178	184	SAR Sar1p-like members of the Ras-family of small	97.57
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.57
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.56
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.55
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.55
PLN03108	210	Rab family protein; Provisional	97.55
TIGR00485	394	EF-Tu translation elongation factor TU. This align	97.55
CHL00071	409	tufA elongation factor Tu	97.55
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	97.55
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.55
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.55
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.55
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	97.54
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	97.53
CHL00189	742	infB translation initiation factor 2; Provisional	97.53
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.52
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.52
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	97.52
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.51
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.51
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	97.5
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.5
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	97.5
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	97.5
PTZ00369	189	Ras-like protein; Provisional	97.49
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.49
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.48
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	97.48
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	97.48
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	97.47
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.47
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	97.47
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	97.47
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	97.45
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.45
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	97.44
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.44
PLN03110	216	Rab GTPase; Provisional	97.43
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.43
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	97.43
PRK12735	396	elongation factor Tu; Reviewed	97.42
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.42
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.41
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.41
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.4
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.39
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.39
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.39
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.37
PRK00049	396	elongation factor Tu; Reviewed	97.37
PLN00043	447	elongation factor 1-alpha; Provisional	97.35
PRK05306	787	infB translation initiation factor IF-2; Validated	97.35
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	97.35
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.35
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.34
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.33
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.33
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	97.32
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.32
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	97.31
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.31
COG0536	369	Obg Predicted GTPase [General function prediction	97.3
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.3
PTZ00141	446	elongation factor 1- alpha; Provisional	97.29
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	97.29
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.28
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.27
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.27
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.27
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	97.26
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	97.25
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	97.22
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.21
PLN03127	447	Elongation factor Tu; Provisional	97.21
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.21
KOG1249	572	consensus Predicted GTPases [General function pred	97.2
PRK14845	1049	translation initiation factor IF-2; Provisional	97.19
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	97.18
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.18
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	97.18
PRK10218	607	GTP-binding protein; Provisional	97.18
PRK04004	586	translation initiation factor IF-2; Validated	97.16
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.16
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	97.15
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.15
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.14
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	97.14
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.12
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.12
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	97.11
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	97.1
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	97.09
KOG1145	683	consensus Mitochondrial translation initiation fac	97.08
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	97.07
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	97.07
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	97.06
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.06
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	97.03
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	96.99
PTZ00141	446	elongation factor 1- alpha; Provisional	96.99
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	96.98
COG2229	187	Predicted GTPase [General function prediction only	96.98
PLN03126	478	Elongation factor Tu; Provisional	96.98
PTZ00416	836	elongation factor 2; Provisional	96.97
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	96.97
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	96.97
KOG0462	650	consensus Elongation factor-type GTP-binding prote	96.93
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	96.91
PRK10218	607	GTP-binding protein; Provisional	96.91
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	96.88
TIGR00503	527	prfC peptide chain release factor 3. This translat	96.85
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	96.82
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	96.82
PLN00023	334	GTP-binding protein; Provisional	96.81
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	96.8
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	96.76
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	96.75
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	96.73
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	96.72
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	96.72
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	96.72
PLN00116	843	translation elongation factor EF-2 subunit; Provis	96.71
KOG0394	210	consensus Ras-related GTPase [General function pre	96.69
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	96.66
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	96.66
PRK00741	526	prfC peptide chain release factor 3; Provisional	96.63
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	96.62
PRK13351	687	elongation factor G; Reviewed	96.61
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.61
cd01896	233	DRG The developmentally regulated GTP-binding prot	96.6
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	96.59
PRK07560	731	elongation factor EF-2; Reviewed	96.55
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	96.54
PF09439	181	SRPRB: Signal recognition particle receptor beta s	96.54
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	96.54
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	96.53
PRK05433	600	GTP-binding protein LepA; Provisional	96.48
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	96.48
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	96.46
PRK04000	411	translation initiation factor IF-2 subunit gamma;	96.45
KOG0461	522	consensus Selenocysteine-specific elongation facto	96.44
KOG0394	210	consensus Ras-related GTPase [General function pre	96.42
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	96.34
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	96.32
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	96.32
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	96.31
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	96.29

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=100.00  E-value=1.7e-54  Score=415.30  Aligned_cols=277  Identities=41%  Similarity=0.721  Sum_probs=245.6

Q ss_pred             CcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCe
Q 016762           99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK  178 (383)
Q Consensus        99 ~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~  178 (383)
                      .++||||||.+..+++.++++.+|+||+|+|+|.|.++.+..+..++.++|+++|+||+||++......|.+++++.+..
T Consensus         3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~   82 (287)
T PRK09563          3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK   82 (287)
T ss_pred             cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence            37899999999999999999999999999999999999999898888889999999999999877778899888766777


Q ss_pred             EEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE
Q 016762          179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV  258 (383)
Q Consensus       179 vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~  258 (383)
                      ++++|++++.|+.+|.+.+.++......+.+.++.....+++++||+||||||||||+|++++.+.+++.||+|++.+++
T Consensus        83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~  162 (287)
T PRK09563         83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI  162 (287)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence            89999999999999988887776543332333333445688999999999999999999999888999999999999999


Q ss_pred             EeCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHH
Q 016762          259 RFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV  338 (383)
Q Consensus       259 ~~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl  338 (383)
                      +++..+.|+||||++.+...+.+.+.+++++++|++..++..+++++++..+.+.   +++.+...|+++....+.++|+
T Consensus       163 ~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~---~~~~l~~~y~~~~~~~~~~~~l  239 (287)
T PRK09563        163 KLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKH---YPERLKERYKLDELPEDILELL  239 (287)
T ss_pred             EeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhh---CHHHHHHHhCCCCCCCCHHHHH
Confidence            9999999999999999988888899999999999999999999999999999886   5778999999975445789999


Q ss_pred             HHHHHHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCCCCC
Q 016762          339 QKLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPPRLS  378 (383)
Q Consensus       339 ~~~a~~~----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp~~~  378 (383)
                      +.+|++.    ++|  |+++||+.||+||++||||+||||.||..+
T Consensus       240 ~~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld~~~~~~  285 (287)
T PRK09563        240 EAIARKRGALRKGGEIDYERASELLLNEFRNGKLGKITLETPEMAE  285 (287)
T ss_pred             HHHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCcEEccCCcccc
Confidence            9999874    345  999999999999999999999999998754

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=100.00  E-value=3e-53  Score=404.63  Aligned_cols=270  Identities=43%  Similarity=0.701  Sum_probs=240.5

Q ss_pred             cCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeE
Q 016762          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV  179 (383)
Q Consensus       100 ~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~v  179 (383)
                      +|||||||.+..+++.+.++.+|+||+|+|+|.|.++.+..+++++.++|+++|+||+||+++.....|.+++++.+..+
T Consensus         1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v   80 (276)
T TIGR03596         1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA   80 (276)
T ss_pred             CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence            47999999999999999999999999999999999999999988888899999999999998877788988887667788


Q ss_pred             EEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE
Q 016762          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR  259 (383)
Q Consensus       180 i~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~  259 (383)
                      +++|++.+.|+.+|.+.+.++........+.++.....+++++||+||||||||||+|++++.+.+++.||+|++.+++.
T Consensus        81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~  160 (276)
T TIGR03596        81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK  160 (276)
T ss_pred             EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE
Confidence            99999999999999888877665433333333334456889999999999999999999988889999999999999999


Q ss_pred             eCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHH
Q 016762          260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ  339 (383)
Q Consensus       260 ~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~  339 (383)
                      ++.++.|+||||++.+...+.+.++++++++++++..++..+++++++..+++.   +++.+...|+++....+..+|++
T Consensus       161 ~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~y~i~~~~~~~~~~l~  237 (276)
T TIGR03596       161 LSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEH---YPERLKERYKLDELPEDIVELLE  237 (276)
T ss_pred             eCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhh---CHHHHHHHhCcCCCCCCHHHHHH
Confidence            988999999999999999899999999999999999999999999999999886   56789999999865557899999


Q ss_pred             HHHHHh----CCC--cHHHHHHHHHHHHhcCCCCceecc
Q 016762          340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLE  372 (383)
Q Consensus       340 ~~a~~~----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~  372 (383)
                      .+|++.    ++|  |+++||+.||+||++||||+||||
T Consensus       238 ~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld  276 (276)
T TIGR03596       238 AIAKKRGCLLKGGELDLDRAAEILLNDFRKGKLGRITLE  276 (276)
T ss_pred             HHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCceecC
Confidence            999874    344  999999999999999999999986

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1161 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=2.4e-46  Score=363.35  Aligned_cols=276  Identities=37%  Similarity=0.660  Sum_probs=231.1

Q ss_pred             CCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHc-C
Q 016762           98 RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-G  176 (383)
Q Consensus        98 ~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~-g  176 (383)
                      ..+|||||||.++.+++.++++.+|+|++|+|||+|.+++++.++++..+++.++|+||+||++...+..|.+++.+. +
T Consensus        12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~   91 (322)
T COG1161          12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG   91 (322)
T ss_pred             ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence            368999999999999999999999999999999999999999999999999999999999999999999999999887 5


Q ss_pred             CeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE
Q 016762          177 TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (383)
Q Consensus       177 ~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~  256 (383)
                      ...++++++.+.+...+...+..+.+..-...+.++......+|++|||||||||||||+|.+++.+.+++.||+|++.|
T Consensus        92 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q  171 (322)
T COG1161          92 IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ  171 (322)
T ss_pred             CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE
Confidence            66788999888888887765555533222223334444556789999999999999999999999999999999999999


Q ss_pred             EEEeCCcEEEEecCccccCCCCc-HHHHHHHHHhcccccCccChHHHHHHHHHHH--hcCCCCCHHHHHH-HcCCCC-CC
Q 016762          257 WVRFGKDLEFLDSPGIIPMRISD-QAAAIKLAICDDIGERSYDVADVAAILVQML--ARIPTVGITALQN-RYKIDM-DG  331 (383)
Q Consensus       257 ~~~~~~~i~l~DTpG~i~~~~~~-~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l--~~~~~~~~~~l~~-~y~i~~-~~  331 (383)
                      +++++..++|+||||++++...+ ...+.+++..++|++.+++...++.+++..+  +.+   +.+.+.. .|.... ..
T Consensus       172 ~i~~~~~i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~y~~~~~~~  248 (322)
T COG1161         172 WIKLDDGIYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGLLIDEH---YGEKLNITRYESNPIHR  248 (322)
T ss_pred             EEEcCCCeEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhhhhhhh---hhHhhCCcccccccccc
Confidence            99999999999999999998877 7888899999999999999999998888766  332   2333332 233221 12


Q ss_pred             CCHHHHHHHHHHHh-----CCC--cHHHHHHHHHHHHhcCCCCceeccCCCC
Q 016762          332 TCGKTFVQKLALHL-----FNG--DTHQAAFRILTDFRKGKFGWISLERPPR  376 (383)
Q Consensus       332 ~~~~~fl~~~a~~~-----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp~  376 (383)
                      .+.++|++.++.+.     ++|  |+++||+.+++||+.|+||++++|.+++
T Consensus       249 ~~~~~~l~~~a~~rg~~l~~~g~~d~~~~~~~~~~d~~~gklg~~~~~~~~~  300 (322)
T COG1161         249 TDPEEFLELIAKKRGWLLLKGGEPDLERAAETILKDIRNGKLGWFSLEEPED  300 (322)
T ss_pred             cCHHHHHHHHHHHhhhhhcCCCCccHHHHHHHHHHHHHhCCcceeecCCccc
Confidence            35678888888654     233  9999999999999999999999987654

>KOG2484 consensus GTPase [General function prediction only]

Probab=100.00  E-value=4.6e-45  Score=349.01  Aligned_cols=270  Identities=35%  Similarity=0.564  Sum_probs=210.7

Q ss_pred             CCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHHHHHHHH
Q 016762           95 KSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWAT  170 (383)
Q Consensus        95 ~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~  170 (383)
                      .+..+.+|++++...+.+++.++++.+||||||+|||+|+++++.+.++++    ++|++|+|+||+||+|++.++.|..
T Consensus       121 ~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~  200 (435)
T KOG2484|consen  121 EEYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLV  200 (435)
T ss_pred             HHhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHH
Confidence            678889999999999999999999999999999999999999999999987    4799999999999999999999999


Q ss_pred             HHHHcCCeEEEeeCcCCCch--hhhh--HH--HHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccc
Q 016762          171 YFAKQGTKVIFSNGQLGMGT--MKLS--RL--AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP  244 (383)
Q Consensus       171 ~l~~~g~~vi~iSa~~g~Gi--~~L~--~~--l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~  244 (383)
                      ||++.|..++|.++..+.+.  ..+.  ..  ...+..... .....+.....++|||||||||||||+||+|..++.|.
T Consensus       201 YLr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lg-ny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~  279 (435)
T KOG2484|consen  201 YLRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLG-NYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACN  279 (435)
T ss_pred             HHHhhCCcceeecccccccccccccccchhhhHHHHHHHhc-CcccccccCcceEeeeecCCCCChhHHHHHHHHhcccc
Confidence            99999999999877654433  1111  00  000111111 11222334567899999999999999999999999999


Q ss_pred             cCCCCCceeEEEEEEeCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016762          245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNR  324 (383)
Q Consensus       245 v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~  324 (383)
                      |++.||.|+..|+++++.++.|+|+||++++...+.. ++.|..|..+..-..+...+..+    |.++   ..+.+...
T Consensus       280 vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~~~-~~~Lrn~~~i~~~~dp~~~v~~i----L~~~---~~e~~~~~  351 (435)
T KOG2484|consen  280 VGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDEKD-ALALRNCIPIGKVADPVTPVSCI----LKRC---SKESRSVL  351 (435)
T ss_pred             CCCCccchhhhhheeccCCceeccCCceeecCCCccc-hhhhhcccccccccCccchHHHH----HHHh---hHHHHHHH
Confidence            9999999999999999999999999999988776654 44444444443323333333333    3333   23678888


Q ss_pred             cCCCCCCCCHHHHHHHHHHHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCCC
Q 016762          325 YKIDMDGTCGKTFVQKLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPPR  376 (383)
Q Consensus       325 y~i~~~~~~~~~fl~~~a~~~----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp~  376 (383)
                      |.++. .....+|+..+|+++    +||  |++.||+.||+||+.|||+|||+  ||.
T Consensus       352 Y~~~~-~~~~~~Fl~~~ar~~G~~~kGG~pd~~~AA~~vl~Dw~~Gki~y~~~--pp~  406 (435)
T KOG2484|consen  352 YNIPS-IRATDDFLEKFARRRGLLLKGGIPDVNAAAFAVLNDWRTGKIGYYTL--PPT  406 (435)
T ss_pred             hcCCC-cchHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHhhccCceeeeeC--CCh
Confidence            98873 345678998888753    466  99999999999999999999996  543

>COG2262 HflX GTPases [General function prediction only]

Probab=100.00  E-value=5.1e-45  Score=352.12  Aligned_cols=222  Identities=21%  Similarity=0.225  Sum_probs=179.4

Q ss_pred             ccccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-H
Q 016762           43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D  116 (383)
Q Consensus        43 ~~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~  116 (383)
                      .+|+|+..||+|||++|  .++|+|.+|||+||||+||+|+   .++..++|+||||++|+|+|     .+|+++.++ +
T Consensus        20 ~~leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~~~ad~VIf~~~LsP~Q-----~~NLe~~l~~k   94 (411)
T COG2262          20 ESLEELAELAETAGYEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEETGADLVIFDHELSPSQ-----LRNLEKELGVK   94 (411)
T ss_pred             hhHHHHHHHHHHcCCeEeeeEEEeccCCCcceecCcchHHHHHHHHHhcCCCEEEECCcCCHHH-----HHHHHHHHCCE
Confidence            49999999999999999  9999999999999999999965   78889999999999999999     999999998 8


Q ss_pred             HhhhcCeEEEEEecCCCC--CCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762          117 QLKLMDVVIEVRDARIPL--STTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       117 ~idr~DlILeV~DaR~p~--~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~  194 (383)
                      +|||+.+||+||..|+..  +..+.+++++.+..|++.             ..| ..+++.|+++    +..|.|..++.
T Consensus        95 VIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~-------------~~~-~~l~~~Gggi----G~rGpGE~~lE  156 (411)
T COG2262          95 VIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLV-------------GSG-SHLSRLGGGI----GFRGPGETQLE  156 (411)
T ss_pred             EEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhH-------------hhh-hhcccccCCC----CCCCCCchHHH
Confidence            999999999999766554  445556777777777762             344 5666677555    66788877652


Q ss_pred             --------------HHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe
Q 016762          195 --------------RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF  260 (383)
Q Consensus       195 --------------~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~  260 (383)
                                    +.++++.+.+...|++|. ....+.|++|||||||||||+|+|++.. +.+.+++|+|+|++++++
T Consensus       157 ~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~-~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~  234 (411)
T COG2262         157 TDRRRIRRRIAKLKRELENVEKAREPRRKKRS-RSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRI  234 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEE
Confidence                          223333333333343333 2345679999999999999999999764 789999999999887665


Q ss_pred             ----CCcEEEEecCccccCCCCcHHHHHHHHHh
Q 016762          261 ----GKDLEFLDSPGIIPMRISDQAAAIKLAIC  289 (383)
Q Consensus       261 ----~~~i~l~DTpG~i~~~~~~~~~~~~la~~  289 (383)
                          +..++|+||+|||...|+...+||+-.+.
T Consensus       235 ~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE  267 (411)
T COG2262         235 ELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE  267 (411)
T ss_pred             EeCCCceEEEecCccCcccCChHHHHHHHHHHH
Confidence                35799999999999999999999995544

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=100.00  E-value=3.6e-39  Score=300.81  Aligned_cols=279  Identities=29%  Similarity=0.422  Sum_probs=213.4

Q ss_pred             EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHH
Q 016762           90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWA  169 (383)
Q Consensus        90 ~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~  169 (383)
                      .++|-.-=.|+.||||||.++.+.+.+.+..+|+|+||.|||.|++++++.+.+.+..+++|+|+||+||+++.+.....
T Consensus        16 ~~~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~i   95 (335)
T KOG2485|consen   16 AVIFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKII   95 (335)
T ss_pred             cccccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHH
Confidence            35555566788999999999999999999999999999999999999999999999999999999999999977777777


Q ss_pred             HHHHHcCCe-EEEeeCcC--CCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhh-----cCC
Q 016762          170 TYFAKQGTK-VIFSNGQL--GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL-----KRR  241 (383)
Q Consensus       170 ~~l~~~g~~-vi~iSa~~--g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~-----~~~  241 (383)
                      +++..++.. +++.++..  ..++..+...+..+..+....-   +.......|++||.||||||||||++.     .++
T Consensus        96 q~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~i---rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k  172 (335)
T KOG2485|consen   96 QYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFI---RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKK  172 (335)
T ss_pred             HHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhh---cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhcc
Confidence            888766533 33344433  2335566555544443322211   112345789999999999999999985     246


Q ss_pred             ccccCCCCCceeEEEE-EEe--CCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCH
Q 016762          242 MCPAAPRPGVTRVLKW-VRF--GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGI  318 (383)
Q Consensus       242 ~~~v~~~pgtT~~~~~-~~~--~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~  318 (383)
                      .+.|++.||+|+.++. +++  ...++++||||++.|.+.+.+.+++||+|++++++.+++..+++|+++.++++..+..
T Consensus       173 ~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~~~~y  252 (335)
T KOG2485|consen  173 AARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEETIADYLLYLLNSHSDFSY  252 (335)
T ss_pred             ceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHHHHHHHHHHHhccCcchh
Confidence            6789999999999875 565  4569999999999999999999999999999999999999999999999999865432


Q ss_pred             HHHHHHcCCCC-CCCCHHHHHHHHHHHh-C-------CC---------cHHHHHHHHHHHHhcCCCCceeccCC
Q 016762          319 TALQNRYKIDM-DGTCGKTFVQKLALHL-F-------NG---------DTHQAAFRILTDFRKGKFGWISLERP  374 (383)
Q Consensus       319 ~~l~~~y~i~~-~~~~~~~fl~~~a~~~-~-------~g---------D~~~Aa~~iL~d~~~Gklg~~~l~~p  374 (383)
                      -   +.++... ..++.+.-+..++.+. +       .|         ++-.+|+.+++-||+|.+|...++..
T Consensus       253 ~---~~l~~~~~~~dd~~~nl~~l~v~~~~~~k~s~fdg~~~~ei~~~~~ln~~e~~l~~~rsg~l~~~~ln~~  323 (335)
T KOG2485|consen  253 V---KDLKPGSTPADDIEQNLAVLAVRRTKNEKVSAFDGNNKLEIEQPNLLNLARFFLATFRSGLLGPEELNYV  323 (335)
T ss_pred             H---HHhccCCCccccHHHHHHHHHHHHHhcceeeEecCCceeEEechHHHHHHHHHHHHHHhccccceeecch
Confidence            2   2223221 1223333344455332 1       12         36789999999999999997665543

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=100.00  E-value=2.9e-39  Score=317.44  Aligned_cols=258  Identities=24%  Similarity=0.363  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEee
Q 016762          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSN  183 (383)
Q Consensus       108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iS  183 (383)
                      -.++++++++++++|+|+.|+|||+|+..+++.++.+..    .|..++++||+||++++++..|.+||++.++.++|.|
T Consensus       162 LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~S  241 (562)
T KOG1424|consen  162 LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFS  241 (562)
T ss_pred             HHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEe
Confidence            357999999999999999999999999999999999986    4778999999999999999999999999999999999


Q ss_pred             CcC----CC--chhhh----------hH---------HHHHhh---hhhhhhhhcc----------C-CCCCceEEeEee
Q 016762          184 GQL----GM--GTMKL----------SR---------LAKALA---SDVNVKRRSK----------G-LLPRAVRAGIVG  224 (383)
Q Consensus       184 a~~----g~--Gi~~L----------~~---------~l~~l~---~~~~~~~~~~----------~-~~~~~~~v~lvG  224 (383)
                      +..    +.  ++.+-          ..         .+.+..   ......+..+          + .....++||+||
T Consensus       242 A~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VG  321 (562)
T KOG1424|consen  242 ALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVG  321 (562)
T ss_pred             cccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeec
Confidence            865    11  11110          00         000000   0000000000          0 011247899999


Q ss_pred             cCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHH
Q 016762          225 YPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAA  304 (383)
Q Consensus       225 ~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~  304 (383)
                      ||||||||+||+|.|++++.|+.+||.|+++|++.+...+.|+||||+++|.+......+   ++.    .++.++++.+
T Consensus       322 YPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~em---vl~----GiLPIDQmrd  394 (562)
T KOG1424|consen  322 YPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEM---VLN----GILPIDQLRD  394 (562)
T ss_pred             CCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCccccCCCchHHHH---HHh----cCccHHHhhc
Confidence            999999999999999999999999999999999999999999999999999775422211   222    3345555544


Q ss_pred             HH--H-HHHhcCCCCCHHHHHHHcCCC-------CCCCCHHHHHHHHHHHhC----C--CcHHHHHHHHHHHHhcCCCCc
Q 016762          305 IL--V-QMLARIPTVGITALQNRYKID-------MDGTCGKTFVQKLALHLF----N--GDTHQAAFRILTDFRKGKFGW  368 (383)
Q Consensus       305 ~l--l-~~l~~~~~~~~~~l~~~y~i~-------~~~~~~~~fl~~~a~~~~----~--gD~~~Aa~~iL~d~~~Gklg~  368 (383)
                      +.  + .+.+++   ....|+..|+..       ....+..+++..+|+..+    +  .|..||||.||+||.+|||.|
T Consensus       395 ~~~~~~llaerI---P~~~Le~~Y~~k~~e~~~~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILKDyv~GKL~~  471 (562)
T KOG1424|consen  395 HYGAVGLLAERI---PRHVLERLYGHKPREDPEDSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILKDYVSGKLLY  471 (562)
T ss_pred             ccchHHHHHHhc---CHHHHHHHhCCCcccccCCCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHHHHhCCeeee
Confidence            42  2 234454   456788888521       122467889999987532    2  299999999999999999998


Q ss_pred             eeccCCCCC
Q 016762          369 ISLERPPRL  377 (383)
Q Consensus       369 ~~l~~pp~~  377 (383)
                      +.  .||++
T Consensus       472 ~~--~PPg~  478 (562)
T KOG1424|consen  472 CF--PPPGY  478 (562)
T ss_pred             ee--CCCCC
Confidence            86  68874

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=100.00  E-value=7.7e-40  Score=311.50  Aligned_cols=254  Identities=29%  Similarity=0.481  Sum_probs=205.5

Q ss_pred             hHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEE
Q 016762          105 GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVI  180 (383)
Q Consensus       105 gh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi  180 (383)
                      |+..+++.++.++||.+|+|+.|+|||+|.++++..++.++.    .|.+|+|+||+||++...+..|...|++....+.
T Consensus       198 GQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiA  277 (572)
T KOG2423|consen  198 GQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIA  277 (572)
T ss_pred             cchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCccee
Confidence            458899999999999999999999999999999999999986    5779999999999999999999999988777666


Q ss_pred             EeeCc-CCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE
Q 016762          181 FSNGQ-LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR  259 (383)
Q Consensus       181 ~iSa~-~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~  259 (383)
                      |-++. +..|-..|.++++++.+-..        ....+.|++||||||||||+||+|..+++|.|++.||-|+-+|++.
T Consensus       278 fHAsi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt  349 (572)
T KOG2423|consen  278 FHASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT  349 (572)
T ss_pred             eehhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH
Confidence            65443 34455667777776654321        1235779999999999999999999999999999999999999998


Q ss_pred             eCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHH
Q 016762          260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ  339 (383)
Q Consensus       260 ~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~  339 (383)
                      +-+.|+||||||++.+.- |.+.-  +.+-|.+  ++-...+.-+|+-.+|.|.   .++.|...|+|+ ...+..+|++
T Consensus       350 LmkrIfLIDcPGvVyps~-dset~--ivLkGvV--RVenv~~pe~yi~~vl~R~---k~ehl~rtYkI~-~w~d~~dfle  420 (572)
T KOG2423|consen  350 LMKRIFLIDCPGVVYPSS-DSETD--IVLKGVV--RVENVKNPEDYIDGVLERC---KPEHLSRTYKIS-GWNDSTDFLE  420 (572)
T ss_pred             HHhceeEecCCCccCCCC-CchHH--HHhhcee--eeeecCCHHHHHHHHHHhh---hHHHHHhhhCCC-ccccHHHHHH
Confidence            999999999999998754 32222  1222333  2334445566666677775   468899999997 3567889999


Q ss_pred             HHHHH----hCCC--cHHHHHHHHHHHHhcCCCCceeccCCCCC
Q 016762          340 KLALH----LFNG--DTHQAAFRILTDFRKGKFGWISLERPPRL  377 (383)
Q Consensus       340 ~~a~~----~~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp~~  377 (383)
                      ++|.+    ++||  |+...|++||+||..|||+||.  .||.+
T Consensus       421 ~La~k~GkLlKGGEPd~~~vsKmvLnDwqRGkiP~FV--pPp~~  462 (572)
T KOG2423|consen  421 KLAIKQGKLLKGGEPDLVVVSKMVLNDWQRGKIPFFV--PPPGL  462 (572)
T ss_pred             HHHHHhCccccCCCCchhHHHHHHhhHhhcCCCceec--CCCcc
Confidence            99975    4666  9999999999999999999997  46644

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=100.00  E-value=1.1e-36  Score=299.18  Aligned_cols=219  Identities=22%  Similarity=0.272  Sum_probs=164.3

Q ss_pred             ccccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-H
Q 016762           43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D  116 (383)
Q Consensus        43 ~~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~  116 (383)
                      .+|.|+..||+|||++|  +++|++.+|||+||+|+||+|+   +++..++|+||||++|+|+|     ++|+++.+. +
T Consensus        17 ~~~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~q-----~~nl~~~~~~~   91 (351)
T TIGR03156        17 ESLEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELSPSQ-----ERNLEKALGCR   91 (351)
T ss_pred             hhHHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCCHHH-----HHHHHHHhCCc
Confidence            47999999999999999  8999999999999999999966   67789999999999999999     999999998 9


Q ss_pred             HhhhcCeEEEEEecCCCCCCCcHHHH--HHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh--
Q 016762          117 QLKLMDVVIEVRDARIPLSTTHPLMD--QWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK--  192 (383)
Q Consensus       117 ~idr~DlILeV~DaR~p~~~~~~~l~--~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~--  192 (383)
                      ++||+.+||+||..|+.......+++  ++.+..|+++             ..|.+ +.+++..+    +..|.|..+  
T Consensus        92 v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~-------------~~~~~-l~~~~~~i----~~~g~gE~~~~  153 (351)
T TIGR03156        92 VIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLV-------------GGWTH-LSRQGGGI----GTRGPGETQLE  153 (351)
T ss_pred             ccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhh-------------hhHHH-HHhhcCCC----CCCCCChhHHH
Confidence            99999999999998887666655544  4444555542             45655 55555433    224455432  


Q ss_pred             -----h-------hHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe
Q 016762          193 -----L-------SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF  260 (383)
Q Consensus       193 -----L-------~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~  260 (383)
                           +       ++.++++.......+..| .....++|++|||||||||||+|+|+++. +.+++.||+|+|+....+
T Consensus       154 ~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r-~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i  231 (351)
T TIGR03156       154 TDRRLIRERIAQLKKELEKVEKQRERQRRRR-KRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRL  231 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEE
Confidence                 2       222233322222222222 11345789999999999999999999876 678999999999765433


Q ss_pred             ----CCcEEEEecCccccCCCCcHHHHHHH
Q 016762          261 ----GKDLEFLDSPGIIPMRISDQAAAIKL  286 (383)
Q Consensus       261 ----~~~i~l~DTpG~i~~~~~~~~~~~~l  286 (383)
                          +..+.++|||||+...+++..++|+-
T Consensus       232 ~~~~~~~i~l~DT~G~~~~l~~~lie~f~~  261 (351)
T TIGR03156       232 DLPDGGEVLLTDTVGFIRDLPHELVAAFRA  261 (351)
T ss_pred             EeCCCceEEEEecCcccccCCHHHHHHHHH
Confidence                35789999999987666666666653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK11058 GTPase HflX; Provisional

Probab=100.00  E-value=8.1e-36  Score=299.37  Aligned_cols=218  Identities=19%  Similarity=0.219  Sum_probs=165.3

Q ss_pred             cccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HH
Q 016762           44 SLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQ  117 (383)
Q Consensus        44 ~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~  117 (383)
                      +|.|+..||+|||++|  .++|+|.+|||+||||+||+|+   +++..++|+||||++|+|+|     .+|+++.+. ++
T Consensus        26 ~~~El~~L~~~~g~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~lsp~q-----~~nle~~~~~~v  100 (426)
T PRK11058         26 DLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQ-----ERNLERLCECRV  100 (426)
T ss_pred             hHHHHHHHHHHCCCEEEEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCCCCHHH-----HHHHHHHHCCeE
Confidence            7999999999999999  8999999999999999999966   77789999999999999999     999999998 89


Q ss_pred             hhhcCeEEEEEecCCCCCCCcH--HHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhh-
Q 016762          118 LKLMDVVIEVRDARIPLSTTHP--LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS-  194 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~~~--~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~-  194 (383)
                      +||+.+||+||..|+.......  +++++.+..|++.             ..| .++.++|+++    +.+|.|..++. 
T Consensus       101 ~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~-------------~~~-~~l~~~~gg~----g~~g~ge~~~e~  162 (426)
T PRK11058        101 IDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLV-------------RGW-THLERQKGGI----GLRGPGETQLET  162 (426)
T ss_pred             ecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhh-------------ccc-cchhhhcCCC----CCCCCChhHhHH
Confidence            9999999999988876665554  4556666777763             345 3455666544    45688887652 


Q ss_pred             ------HHH-------HHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-
Q 016762          195 ------RLA-------KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-  260 (383)
Q Consensus       195 ------~~l-------~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-  260 (383)
                            +.+       +++.......+..|. ....++|++|||||||||||||+|++.+. .+++.||+|++.....+ 
T Consensus       163 d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~-~~~~p~ValVG~~NaGKSSLlN~Lt~~~~-~v~~~~~tTld~~~~~i~  240 (426)
T PRK11058        163 DRRLLRNRIVQILSRLERVEKQREQGRRARI-KADVPTVSLVGYTNAGKSTLFNRITEARV-YAADQLFATLDPTLRRID  240 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh-hcCCCEEEEECCCCCCHHHHHHHHhCCce-eeccCCCCCcCCceEEEE
Confidence                  112       222211111111111 11235799999999999999999998764 58999999999765443 


Q ss_pred             -C--CcEEEEecCccccCCCCcHHHHHHH
Q 016762          261 -G--KDLEFLDSPGIIPMRISDQAAAIKL  286 (383)
Q Consensus       261 -~--~~i~l~DTpG~i~~~~~~~~~~~~l  286 (383)
                       +  ..+.++|||||+...+++...+|+.
T Consensus       241 l~~~~~~~l~DTaG~~r~lp~~lve~f~~  269 (426)
T PRK11058        241 VADVGETVLADTVGFIRHLPHDLVAAFKA  269 (426)
T ss_pred             eCCCCeEEEEecCcccccCCHHHHHHHHH
Confidence             2  3788999999987656666666643

>cd01856 YlqF YlqF

Probab=100.00  E-value=7.8e-32  Score=239.42  Aligned_cols=171  Identities=47%  Similarity=0.907  Sum_probs=144.1

Q ss_pred             CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEE
Q 016762          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF  181 (383)
Q Consensus       102 w~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~  181 (383)
                      ||||||.++.+++.+.++++|+|++|+|++.|....+..+...+.++|.++|+||+||.+.+....|.++++..+..+++
T Consensus         1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~   80 (171)
T cd01856           1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF   80 (171)
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence            99999999999999999999999999999998887777777777789999999999998776666788887776778899


Q ss_pred             eeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeC
Q 016762          182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG  261 (383)
Q Consensus       182 iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~  261 (383)
                      +|++.+.|+.+|.+.+.+........ +.....+..++++++|.||||||||+|+|++...+.+++.||+|++.+.+.++
T Consensus        81 iSa~~~~gi~~L~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~  159 (171)
T cd01856          81 VNAKSGKGVKKLLKAAKKLLKDIEKL-KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS  159 (171)
T ss_pred             EECCCcccHHHHHHHHHHHHHHHhhh-hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec
Confidence            99999999999988777654322111 11122334578999999999999999999988777899999999999998888


Q ss_pred             CcEEEEecCccc
Q 016762          262 KDLEFLDSPGII  273 (383)
Q Consensus       262 ~~i~l~DTpG~i  273 (383)
                      ..+.++||||++
T Consensus       160 ~~~~~iDtpG~~  171 (171)
T cd01856         160 PGIYLLDTPGIL  171 (171)
T ss_pred             CCEEEEECCCCC
Confidence            889999999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01858 NGP_1 NGP-1

Probab=99.96  E-value=1.2e-28  Score=215.74  Aligned_cols=151  Identities=31%  Similarity=0.542  Sum_probs=127.6

Q ss_pred             HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEeeCcCCC
Q 016762          114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM  188 (383)
Q Consensus       114 l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g-~~vi~iSa~~g~  188 (383)
                      +++.++.+|+|++|+|++.|....+..+.+.+.    ++|+++|+||+||.++++...|..++.+.. ..++++|++.+.
T Consensus         2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence            567899999999999999998888888877764    389999999999998888888988886543 235678999999


Q ss_pred             chhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEe
Q 016762          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD  268 (383)
Q Consensus       189 Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~D  268 (383)
                      |..+|.+.+.++....   +     .....+|+++|.||||||||||+|.+.+.+.+++.||+|++.+++.++.+++|+|
T Consensus        82 ~~~~L~~~l~~~~~~~---~-----~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liD  153 (157)
T cd01858          82 GKGSLIQLLRQFSKLH---S-----DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLID  153 (157)
T ss_pred             cHHHHHHHHHHHHhhh---c-----cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEE
Confidence            9999888877654321   0     1134679999999999999999999999899999999999999999888899999


Q ss_pred             cCcc
Q 016762          269 SPGI  272 (383)
Q Consensus       269 TpG~  272 (383)
                      |||+
T Consensus       154 tPGi  157 (157)
T cd01858         154 CPGV  157 (157)
T ss_pred             CcCC
Confidence            9996

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.95  E-value=2.6e-27  Score=210.40  Aligned_cols=150  Identities=36%  Similarity=0.606  Sum_probs=113.2

Q ss_pred             CeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCC--chh----
Q 016762          122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM--GTM----  191 (383)
Q Consensus       122 DlILeV~DaR~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~--Gi~----  191 (383)
                      |+|++|+|+|.|.++.++++.+.+    .++|+|+|+||+||++++.+..|.+++++....+.|.|+....  ++.    
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV   80 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence            899999999999999999988873    4789999999999999999999999998876555555543321  110    


Q ss_pred             -------hhhHH-----HHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE
Q 016762          192 -------KLSRL-----AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR  259 (383)
Q Consensus       192 -------~L~~~-----l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~  259 (383)
                             .+...     .+++........ .++.....++++++|+||||||||||+|++++.+.+++.||+|++.+++.
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~  159 (172)
T cd04178          81 KVEAASADLLRSSVCFGADCLLKLLKNYS-RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH  159 (172)
T ss_pred             ccchhhhhhhhhccccCHHHHHHHHHHHh-hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE
Confidence                   01000     001110011111 11122346789999999999999999999998889999999999999999


Q ss_pred             eCCcEEEEecCcc
Q 016762          260 FGKDLEFLDSPGI  272 (383)
Q Consensus       260 ~~~~i~l~DTpG~  272 (383)
                      ++.++.|+||||+
T Consensus       160 ~~~~~~l~DtPGi  172 (172)
T cd04178         160 LDKKVKLLDSPGI  172 (172)
T ss_pred             eCCCEEEEECcCC
Confidence            9889999999997

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.95  E-value=3.1e-27  Score=203.31  Aligned_cols=136  Identities=34%  Similarity=0.617  Sum_probs=122.2

Q ss_pred             HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcC
Q 016762          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL  186 (383)
Q Consensus       111 ~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~  186 (383)
                      ++++.+.++++|+|++|+|++.|.+..+.++.+++.    ++|+++|+||+||.+++....|.+++++.+..++++|+..
T Consensus         2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~   81 (141)
T cd01857           2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK   81 (141)
T ss_pred             HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence            467788999999999999999999988888887763    7899999999999988888889888888888899999987


Q ss_pred             CCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEE
Q 016762          187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEF  266 (383)
Q Consensus       187 g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l  266 (383)
                      +.+                             +++++|.||||||||+|+|.+++.+.++..+|+|++.+++.++.++.+
T Consensus        82 ~~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  132 (141)
T cd01857          82 ENA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITL  132 (141)
T ss_pred             CCc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEE
Confidence            643                             489999999999999999999888889999999999999999889999


Q ss_pred             EecCccccC
Q 016762          267 LDSPGIIPM  275 (383)
Q Consensus       267 ~DTpG~i~~  275 (383)
                      +|||||++|
T Consensus       133 ~DtpG~~~p  141 (141)
T cd01857         133 CDCPGLVFP  141 (141)
T ss_pred             EECCCcCCC
Confidence            999999875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.95  E-value=1.2e-26  Score=202.85  Aligned_cols=151  Identities=32%  Similarity=0.512  Sum_probs=121.2

Q ss_pred             CeEEEEEecCCCCCCCcHHHH-HHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHc-CCeEEEeeCcCCCchhhhhHHH
Q 016762          122 DVVIEVRDARIPLSTTHPLMD-QWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       122 DlILeV~DaR~p~~~~~~~l~-~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~-g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      |++|+|+|++.|.+..+..+. ..+  .++|.++|+||+||+++++...|..++.+. +..++++|+++|.|+..|.+.+
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i   80 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF   80 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence            799999999999998888777 333  478999999999999888777887666544 4568899999999999987766


Q ss_pred             HHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcc
Q 016762          198 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI  272 (383)
Q Consensus       198 ~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~  272 (383)
                      .+...........+.......+++++|+||||||||+|+|++...+.+++.||+|++.+++.++..+.|+|||||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~  155 (155)
T cd01849          81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI  155 (155)
T ss_pred             HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence            443211111111112223567899999999999999999999887889999999999999998889999999997

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01855 YqeH YqeH

Probab=99.92  E-value=1.2e-24  Score=196.34  Aligned_cols=150  Identities=31%  Similarity=0.387  Sum_probs=117.5

Q ss_pred             HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH----HHHHHHHH--HHcC---CeEE
Q 016762          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWATYF--AKQG---TKVI  180 (383)
Q Consensus       110 ~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~----~~~w~~~l--~~~g---~~vi  180 (383)
                      +...+.++++++|+|++|+|++++.......+.....++|+++|+||+|+.+.+.    ...|...+  ...+   ..++
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI  103 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence            4666778899999999999999887777766644445789999999999985432    33454111  2223   2588


Q ss_pred             EeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCC--------ccccCCCCCce
Q 016762          181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR--------MCPAAPRPGVT  252 (383)
Q Consensus       181 ~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~--------~~~v~~~pgtT  252 (383)
                      ++|+++|.|+++|.+.+.+...             ...++++||.||||||||||+|.+..        .+.++..||||
T Consensus       104 ~vSA~~~~gi~eL~~~l~~~l~-------------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT  170 (190)
T cd01855         104 LISAKKGWGVEELINAIKKLAK-------------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT  170 (190)
T ss_pred             EEECCCCCCHHHHHHHHHHHhh-------------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee
Confidence            9999999999998777665542             12369999999999999999999753        24678999999


Q ss_pred             eEEEEEEeCCcEEEEecCcc
Q 016762          253 RVLKWVRFGKDLEFLDSPGI  272 (383)
Q Consensus       253 ~~~~~~~~~~~i~l~DTpG~  272 (383)
                      ++.+.+.++.++.++|||||
T Consensus       171 ~~~~~~~~~~~~~~~DtPG~  190 (190)
T cd01855         171 LDLIKIPLGNGKKLYDTPGI  190 (190)
T ss_pred             eeeEEEecCCCCEEEeCcCC
Confidence            99999999878999999997

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=99.92  E-value=4.1e-24  Score=186.63  Aligned_cols=149  Identities=34%  Similarity=0.551  Sum_probs=121.7

Q ss_pred             HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchh
Q 016762          114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (383)
Q Consensus       114 l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~  191 (383)
                      ++.+++++|++++|+|++.|....+.++..++  .++|+++|+||+|+.+......|..+....+..++++|+++|.|++
T Consensus         6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~   85 (156)
T cd01859           6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTK   85 (156)
T ss_pred             HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHH
Confidence            33556779999999999998877777776544  3789999999999987766666654444456678999999999999


Q ss_pred             hhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCc
Q 016762          192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPG  271 (383)
Q Consensus       192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG  271 (383)
                      +|.+.+.++...          .....+++++|+||||||||+|+|.+.....+++.+|+|++.+.+..+..+.++||||
T Consensus        86 ~L~~~l~~~~~~----------~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG  155 (156)
T cd01859          86 ILRRTIKELAKI----------DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG  155 (156)
T ss_pred             HHHHHHHHHHhh----------cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence            998887766532          1134578999999999999999999877778899999999999888888899999999


Q ss_pred             c
Q 016762          272 I  272 (383)
Q Consensus       272 ~  272 (383)
                      +
T Consensus       156 i  156 (156)
T cd01859         156 V  156 (156)
T ss_pred             C
Confidence            7

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.92  E-value=2.4e-24  Score=211.77  Aligned_cols=164  Identities=24%  Similarity=0.276  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEee
Q 016762          107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSN  183 (383)
Q Consensus       107 ~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g-~~vi~iS  183 (383)
                      ++...++....++++|+||+|+|++.+.+..+.+++++++  ++|+++|+||+|-...+..   ...|.++| ++++.+|
T Consensus        70 ~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~---~~efyslG~g~~~~IS  146 (444)
T COG1160          70 QELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEEL---AYEFYSLGFGEPVPIS  146 (444)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhh---HHHHHhcCCCCceEee
Confidence            4566777778899999999999999999999999999886  5899999999997633321   12344566 6789999


Q ss_pred             CcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE---EEe
Q 016762          184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRF  260 (383)
Q Consensus       184 a~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~---~~~  260 (383)
                      +.+|.|+.+|.+.+.+... ........+ ...+++|+|||.||||||||+|+|+|+.++.+++.||||||.-.   .+-
T Consensus       147 A~Hg~Gi~dLld~v~~~l~-~~e~~~~~~-~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~  224 (444)
T COG1160         147 AEHGRGIGDLLDAVLELLP-PDEEEEEEE-ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD  224 (444)
T ss_pred             hhhccCHHHHHHHHHhhcC-Ccccccccc-cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC
Confidence            9999999999877666542 111111111 12578999999999999999999999999999999999999643   333


Q ss_pred             CCcEEEEecCccccC
Q 016762          261 GKDLEFLDSPGIIPM  275 (383)
Q Consensus       261 ~~~i~l~DTpG~i~~  275 (383)
                      +.++.++||.|+.+.
T Consensus       225 ~~~~~liDTAGiRrk  239 (444)
T COG1160         225 GRKYVLIDTAGIRRK  239 (444)
T ss_pred             CeEEEEEECCCCCcc
Confidence            678999999999864

>PRK13796 GTPase YqeH; Provisional

Probab=99.90  E-value=5e-23  Score=203.65  Aligned_cols=152  Identities=26%  Similarity=0.313  Sum_probs=119.7

Q ss_pred             HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCH----HHHHHHHHHHH-HcCC---eEEE
Q 016762          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATYFA-KQGT---KVIF  181 (383)
Q Consensus       110 ~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~----~~~~~w~~~l~-~~g~---~vi~  181 (383)
                      +.+.+.+.-+..++|++|+|+.+..++...++.++..++++++|+||+||.++    +....|...+. ..|.   .+++
T Consensus        59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~  138 (365)
T PRK13796         59 FLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVL  138 (365)
T ss_pred             HHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence            33333333344459999999999888888889888888999999999999863    34566766543 3454   5789


Q ss_pred             eeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcC-----CccccCCCCCceeEEE
Q 016762          182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLK  256 (383)
Q Consensus       182 iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~-----~~~~v~~~pgtT~~~~  256 (383)
                      +|+++|.|+++|.+.+.+...              ..++++||+||||||||||+|.+.     +.+.++..||||++.+
T Consensus       139 vSAk~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~  204 (365)
T PRK13796        139 ISAQKGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI  204 (365)
T ss_pred             EECCCCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE
Confidence            999999999988777655421              125899999999999999999854     2456899999999999


Q ss_pred             EEEeCCcEEEEecCccccC
Q 016762          257 WVRFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       257 ~~~~~~~i~l~DTpG~i~~  275 (383)
                      ++.++.+..|+|||||+.+
T Consensus       205 ~~~l~~~~~l~DTPGi~~~  223 (365)
T PRK13796        205 EIPLDDGSFLYDTPGIIHR  223 (365)
T ss_pred             EEEcCCCcEEEECCCcccc
Confidence            9999888899999999853

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.90  E-value=7.3e-25  Score=205.26  Aligned_cols=247  Identities=14%  Similarity=0.139  Sum_probs=161.4

Q ss_pred             cccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HH
Q 016762           44 SLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQ  117 (383)
Q Consensus        44 ~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~  117 (383)
                      +|.|.-.|+.|++.-+  +++++.-.++|++|||+|++|+   .+.+.+ ...+|++..++.+   ..|.+..+... ++
T Consensus         7 qleea~aLvdtl~~~nvv~t~~kpv~~~rk~~~gsGn~e~Li~~i~aa~-at~~f~nv~a~~a---~~~~ek~r~~~Vrv   82 (410)
T KOG0410|consen    7 QLEEANALVDTLQQRNVVRTWAKPVLDNRKTYIGSGNVEELIIEIFAAH-ATTKFANVQAELA---ALMYEKSRLVRVRV   82 (410)
T ss_pred             HHHHHHHHHHhhccchhhhheeeeccCCcceeeecCcHHHHHHHHhcCc-cceeeecccccch---hHHHHHhhhcceee
Confidence            5788889999998777  9999999999999999999977   333344 4678888887765   11333333333 66


Q ss_pred             hhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhh----
Q 016762          118 LKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL----  193 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L----  193 (383)
                      .||..+|+.+|.+++.......+++.  ...|.+         .......|...+++.|..+      .|.|...+    
T Consensus        83 fDr~~~vl~if~q~a~T~earlqval--Aempy~---------~~rl~r~~~hl~r~~g~~v------~gsges~id~d~  145 (410)
T KOG0410|consen   83 FDRRHTVLQIFEQEAVTAEARLQVAL--AEMPYV---------GGRLERELQHLRRQSGGQV------KGSGESIIDRDI  145 (410)
T ss_pred             ecchhhHHHHHHHHhhhHHHHHhhhh--hcCccc---------cchHHHHHHHHHhcCCCcc------cCccchHhHHHH
Confidence            89999999999877655554444332  223322         2233466766666555542      23443322    


Q ss_pred             -----------hHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e
Q 016762          194 -----------SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F  260 (383)
Q Consensus       194 -----------~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~  260 (383)
                                 ++.++.+.+++ ..|..+.. .....|++|||||+|||||||+|++ ..+...++.|.|+|++...  +
T Consensus       146 ~rllr~kea~lrKeL~~vrrkr-~~r~gr~~-~s~pviavVGYTNaGKsTLikaLT~-Aal~p~drLFATLDpT~h~a~L  222 (410)
T KOG0410|consen  146 RRLLRIKEAQLRKELQRVRRKR-QRRVGREG-ESSPVIAVVGYTNAGKSTLIKALTK-AALYPNDRLFATLDPTLHSAHL  222 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hhhhcccc-CCCceEEEEeecCccHHHHHHHHHh-hhcCccchhheeccchhhhccC
Confidence                       22222222222 11122222 2345699999999999999999994 4578889999999987533  2


Q ss_pred             --CCcEEEEecCccccCCCCcHHHHHHHHHhccc--------ccCc-cChHHHHHHHHHHHhcCC
Q 016762          261 --GKDLEFLDSPGIIPMRISDQAAAIKLAICDDI--------GERS-YDVADVAAILVQMLARIP  314 (383)
Q Consensus       261 --~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i--------~~~~-~~~~~~~~~ll~~l~~~~  314 (383)
                        +..++++||+|||...|..+..||...+..-.        -+.+ -+.++...-+++.|+.+.
T Consensus       223 psg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~ig  287 (410)
T KOG0410|consen  223 PSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIG  287 (410)
T ss_pred             CCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcC
Confidence              66799999999999999999999985543210        0111 123445556778887775

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.90  E-value=6.4e-23  Score=202.64  Aligned_cols=155  Identities=26%  Similarity=0.331  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH----HHHHHHH-HHHHcCC---e
Q 016762          107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWAT-YFAKQGT---K  178 (383)
Q Consensus       107 ~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~----~~~~w~~-~l~~~g~---~  178 (383)
                      ...+.+.+..+.+.+++|++|+|+.+...+...++.+...++|+++|+||+||.++.    ....|.. ++++.|.   .
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~  129 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVD  129 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCc
Confidence            356667677778899999999999999888888999888889999999999998643    4566654 3445564   4


Q ss_pred             EEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCC-----ccccCCCCCcee
Q 016762          179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTR  253 (383)
Q Consensus       179 vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~-----~~~v~~~pgtT~  253 (383)
                      ++++|+++|.|+++|.+.+.++..              ..+|++||.||||||||||+|+++.     .+.+++.||||+
T Consensus       130 i~~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~  195 (360)
T TIGR03597       130 IILVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTL  195 (360)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEe
Confidence            888999999999988777655421              1369999999999999999999753     357899999999


Q ss_pred             EEEEEEeCCcEEEEecCccccC
Q 016762          254 VLKWVRFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       254 ~~~~~~~~~~i~l~DTpG~i~~  275 (383)
                      +.+.+.++.++.++|||||...
T Consensus       196 ~~~~~~~~~~~~l~DtPG~~~~  217 (360)
T TIGR03597       196 DLIEIPLDDGHSLYDTPGIINS  217 (360)
T ss_pred             eEEEEEeCCCCEEEECCCCCCh
Confidence            9999888888999999999854

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.89  E-value=1.3e-22  Score=198.91  Aligned_cols=143  Identities=22%  Similarity=0.315  Sum_probs=118.7

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCch
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi  190 (383)
                      ..+.++|.|+.|+|+..|.... ..+.+++     .+.|.++|+||+||++..+...|.+.+...|+.++++|+.++.|+
T Consensus        85 ~~~aNvD~vLlV~d~~~p~~~~-~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI  163 (352)
T PRK12289         85 PPVANADQILLVFALAEPPLDP-WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGL  163 (352)
T ss_pred             hhhhcCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCH
Confidence            3488999999999998765322 2344443     378999999999999887778898888888999999999999998


Q ss_pred             hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-------ceeEEEEEEeCCc
Q 016762          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKD  263 (383)
Q Consensus       191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~~~  263 (383)
                      .+|.+.+..                  ..++|+|.||||||||||+|.+.....+++.+|       ||++.+++.+..+
T Consensus       164 ~eL~~~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g  225 (352)
T PRK12289        164 EALLEQLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG  225 (352)
T ss_pred             HHHhhhhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC
Confidence            877655421                  137999999999999999999988888999998       9999999998666


Q ss_pred             EEEEecCccccCCC
Q 016762          264 LEFLDSPGIIPMRI  277 (383)
Q Consensus       264 i~l~DTpG~i~~~~  277 (383)
                      .+|+|||||..+.+
T Consensus       226 ~~liDTPG~~~~~l  239 (352)
T PRK12289        226 GLLADTPGFNQPDL  239 (352)
T ss_pred             cEEEeCCCcccccc
Confidence            79999999987655

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.87  E-value=1e-21  Score=184.22  Aligned_cols=144  Identities=22%  Similarity=0.278  Sum_probs=114.0

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHH-HHHHHHHHHcCCeEEEeeCcCCCc
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQLGMG  189 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~-~~w~~~l~~~g~~vi~iSa~~g~G  189 (383)
                      ..+.++|.++.|+|+++|..+.+. +.+++     .+.|.++|+||+||.+.... ..|.+.+.+.|..++++|+++|.|
T Consensus        32 ~~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~g  110 (245)
T TIGR00157        32 PIVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDG  110 (245)
T ss_pred             cccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchh
Confidence            368999999999999988755443 44443     37899999999999865443 467778877888899999999999


Q ss_pred             hhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCC-------CceeEEEEEEeCC
Q 016762          190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGK  262 (383)
Q Consensus       190 i~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~~~  262 (383)
                      +++|.+.+..                  ..++++|.||||||||||+|.+.....+++.+       +||++.+++.+ .
T Consensus       111 i~eLf~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~  171 (245)
T TIGR00157       111 LKELIEALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-H  171 (245)
T ss_pred             HHHHHhhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-C
Confidence            8887654321                  14799999999999999999988766666554       39999999988 4


Q ss_pred             cEEEEecCccccCCCCc
Q 016762          263 DLEFLDSPGIIPMRISD  279 (383)
Q Consensus       263 ~i~l~DTpG~i~~~~~~  279 (383)
                      +.+|+|||||....+.+
T Consensus       172 ~~~liDtPG~~~~~l~~  188 (245)
T TIGR00157       172 GGLIADTPGFNEFGLWH  188 (245)
T ss_pred             CcEEEeCCCccccCCCC
Confidence            66999999998765543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12288 GTPase RsgA; Reviewed

Probab=99.82  E-value=1.2e-19  Score=177.84  Aligned_cols=140  Identities=24%  Similarity=0.334  Sum_probs=110.3

Q ss_pred             hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHH---HHHHHHHHHHHcCCeEEEeeCcCCCc
Q 016762          118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMA---DRNAWATYFAKQGTKVIFSNGQLGMG  189 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~---~~~~w~~~l~~~g~~vi~iSa~~g~G  189 (383)
                      ..++|.++.|++.. |..+.. .+++++     .+.|.++|+||+||++..   ....|.+.+...|..++++|++++.|
T Consensus       118 aANvD~vlIV~s~~-p~~s~~-~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G  195 (347)
T PRK12288        118 AANIDQIVIVSAVL-PELSLN-IIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG  195 (347)
T ss_pred             EEEccEEEEEEeCC-CCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence            57799999888864 333322 334443     268999999999998754   35667777777888999999999999


Q ss_pred             hhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-------ceeEEEEEEeCC
Q 016762          190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGK  262 (383)
Q Consensus       190 i~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~~  262 (383)
                      +.+|.+.+..   .               .++|+|.||||||||||+|.++....++..++       ||++.+++.+..
T Consensus       196 ideL~~~L~~---k---------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~  257 (347)
T PRK12288        196 LEELEAALTG---R---------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH  257 (347)
T ss_pred             HHHHHHHHhh---C---------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC
Confidence            9888766532   0               27899999999999999999988888888775       899999999977


Q ss_pred             cEEEEecCccccCCC
Q 016762          263 DLEFLDSPGIIPMRI  277 (383)
Q Consensus       263 ~i~l~DTpG~i~~~~  277 (383)
                      +..|+|||||....+
T Consensus       258 ~~~liDTPGir~~~l  272 (347)
T PRK12288        258 GGDLIDSPGVREFGL  272 (347)
T ss_pred             CCEEEECCCCCcccC
Confidence            778999999986544

>PRK00098 GTPase RsgA; Reviewed

Probab=99.82  E-value=1.2e-19  Score=175.03  Aligned_cols=140  Identities=23%  Similarity=0.298  Sum_probs=111.3

Q ss_pred             HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCC-CHHHHHHHHHHHHHcCCeEEEeeCcCCCch
Q 016762          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI-SMADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (383)
Q Consensus       117 ~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~-~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi  190 (383)
                      .+.++|+++.|+|+..|..... .+++++     .+.|.++|+||+||. +......|...+.+.|..++++|++++.|+
T Consensus        77 iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi  155 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL  155 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence            4799999999999987755433 233332     368999999999997 444556677777777888999999999998


Q ss_pred             hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-------ceeEEEEEEeCCc
Q 016762          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKD  263 (383)
Q Consensus       191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~~~  263 (383)
                      .+|.+.++                  ...++++|.+|||||||+|+|.+.....++..++       ||++.+++.+...
T Consensus       156 ~~L~~~l~------------------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~  217 (298)
T PRK00098        156 DELKPLLA------------------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG  217 (298)
T ss_pred             HHHHhhcc------------------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC
Confidence            87765431                  1258999999999999999999887777776664       8999999888777


Q ss_pred             EEEEecCccccC
Q 016762          264 LEFLDSPGIIPM  275 (383)
Q Consensus       264 i~l~DTpG~i~~  275 (383)
                      .+++|||||...
T Consensus       218 ~~~~DtpG~~~~  229 (298)
T PRK00098        218 GLLIDTPGFSSF  229 (298)
T ss_pred             cEEEECCCcCcc
Confidence            899999999853

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=5.8e-19  Score=180.64  Aligned_cols=181  Identities=22%  Similarity=0.191  Sum_probs=123.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD  164 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~  164 (383)
                      +..+.+||....... ..+-...+..+....+..+|+||+|+|++.+.+..+..+..++.  ++|+++|+||+|+.....
T Consensus        85 ~~~~~l~DT~G~~~~-~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~  163 (472)
T PRK03003         85 GRRFTVVDTGGWEPD-AKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA  163 (472)
T ss_pred             CcEEEEEeCCCcCCc-chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch
Confidence            345677876432110 01112344555567789999999999999887766666666554  689999999999964321


Q ss_pred             HHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc
Q 016762          165 RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC  243 (383)
Q Consensus       165 ~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~  243 (383)
                        ...+ +...| ...+++|+++|.|+.+|.+.+.+.......   ........++|+++|.||||||||+|+|++....
T Consensus       164 --~~~~-~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~---~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~  237 (472)
T PRK03003        164 --DAAA-LWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPR---VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERS  237 (472)
T ss_pred             --hhHH-HHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccc---cccccccceEEEEECCCCCCHHHHHHHHhCCCcc
Confidence              1112 22334 346789999999999986655443222111   1111234689999999999999999999998777


Q ss_pred             ccCCCCCceeEEEE--EEe-CCcEEEEecCcccc
Q 016762          244 PAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       244 ~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~  274 (383)
                      .+++.||+|++...  +.. +..+.|+||||+..
T Consensus       238 ~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~  271 (472)
T PRK03003        238 VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR  271 (472)
T ss_pred             cccCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence            78999999998642  223 45689999999864

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=8.8e-19  Score=177.61  Aligned_cols=182  Identities=23%  Similarity=0.222  Sum_probs=128.2

Q ss_pred             CCCcEEEEcCCCCCcCCCch-HHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCH
Q 016762           86 LDADLYYWTKSLRPVQWYPG-HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM  162 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pg-h~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~  162 (383)
                      .+.++.+||......  ... -.....++....+..+|+||+|+|++.+.+..+.++..++.  ++|+++|+||+|+...
T Consensus        47 ~~~~~~liDT~G~~~--~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~  124 (435)
T PRK00093         47 LGREFILIDTGGIEP--DDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE  124 (435)
T ss_pred             CCcEEEEEECCCCCC--cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc
Confidence            346788888643321  111 12234445556789999999999999887777766766654  7899999999997653


Q ss_pred             HHHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCC
Q 016762          163 ADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       163 ~~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      +.  .. ..+.+.|. .++++|+++|.|+.++.+.+.+.......    .......++|+++|.||||||||+|+|++..
T Consensus       125 ~~--~~-~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~----~~~~~~~~~v~ivG~~n~GKStlin~ll~~~  197 (435)
T PRK00093        125 EA--DA-YEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE----EDEEDEPIKIAIIGRPNVGKSSLINALLGEE  197 (435)
T ss_pred             hh--hH-HHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc----ccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence            21  11 22234554 47899999999998886665442211110    0002246899999999999999999999988


Q ss_pred             ccccCCCCCceeEEEEEEe---CCcEEEEecCccccCC
Q 016762          242 MCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR  276 (383)
Q Consensus       242 ~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~  276 (383)
                      .+.+++.+|+|++.....+   +..+.++||||+....
T Consensus       198 ~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~  235 (435)
T PRK00093        198 RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKG  235 (435)
T ss_pred             ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCc
Confidence            8889999999999753332   5579999999997543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.81  E-value=2.4e-19  Score=172.11  Aligned_cols=142  Identities=21%  Similarity=0.249  Sum_probs=110.2

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCch
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi  190 (383)
                      -++.++|+++.|+|++.|..+. ..+++++     .++|.++|+||+||.+..+...|..++.+.|..++++|++++.|+
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~-~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi  152 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNP-RLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL  152 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCH-HHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence            3589999999999999887221 2344433     378999999999998775555676666667889999999999998


Q ss_pred             hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCC-------CCceeEEEEEEeCCc
Q 016762          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKD  263 (383)
Q Consensus       191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~-------pgtT~~~~~~~~~~~  263 (383)
                      ++|...+..                  ..++++|.+|||||||||+|++.....++..       .+||++.+.+++...
T Consensus       153 ~~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~  214 (287)
T cd01854         153 DELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG  214 (287)
T ss_pred             HHHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC
Confidence            877655431                  1589999999999999999998765554433       348999999888767


Q ss_pred             EEEEecCccccCC
Q 016762          264 LEFLDSPGIIPMR  276 (383)
Q Consensus       264 i~l~DTpG~i~~~  276 (383)
                      .+|+|||||....
T Consensus       215 ~~liDtPG~~~~~  227 (287)
T cd01854         215 GLLIDTPGFREFG  227 (287)
T ss_pred             CEEEECCCCCccC
Confidence            7899999997543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal

Probab=99.80  E-value=6.6e-21  Score=151.06  Aligned_cols=82  Identities=22%  Similarity=0.246  Sum_probs=77.4

Q ss_pred             ccccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-H
Q 016762           43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D  116 (383)
Q Consensus        43 ~~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~  116 (383)
                      .+|.|+..||+|||++|  +++|++++|||+||||+||+|+   .++..++|+++||++|||+|     .+|+++.+. +
T Consensus         8 ~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q-----~rNLe~~~~~~   82 (95)
T PF13167_consen    8 ESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQ-----QRNLEKALGVK   82 (95)
T ss_pred             HHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHH-----HHHHHHHHCCe
Confidence            48999999999999999  8999999999999999999966   77889999999999999999     999999998 8


Q ss_pred             HhhhcCeEEEEEe
Q 016762          117 QLKLMDVVIEVRD  129 (383)
Q Consensus       117 ~idr~DlILeV~D  129 (383)
                      ++||+.+||+||.
T Consensus        83 V~DRt~LIL~IFA   95 (95)
T PF13167_consen   83 VIDRTQLILEIFA   95 (95)
T ss_pred             eeccccHHHHHcC
Confidence            9999999999984

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.80  E-value=6.4e-19  Score=178.21  Aligned_cols=181  Identities=23%  Similarity=0.248  Sum_probs=130.9

Q ss_pred             CCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHH
Q 016762           87 DADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA  163 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh-~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~  163 (383)
                      +..+.+||...-  .....+ ...+.++....++.+|+|++|+|++.+....+.++.+++.  ++|+++|+||+|+...+
T Consensus        46 ~~~~~liDTpG~--~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~  123 (429)
T TIGR03594        46 GREFILIDTGGI--EEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED  123 (429)
T ss_pred             CeEEEEEECCCC--CCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence            445778886432  111111 3455666677899999999999999888777777777764  78999999999997654


Q ss_pred             HHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCc
Q 016762          164 DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM  242 (383)
Q Consensus       164 ~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~  242 (383)
                      ...   ..+.+.|. .++++|+++|.|+.++.+.+.+.......   ........++|+++|.||||||||+|+|++...
T Consensus       124 ~~~---~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~---~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~  197 (429)
T TIGR03594       124 AVA---AEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEE---EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEER  197 (429)
T ss_pred             ccH---HHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccc---cccccCCceEEEEECCCCCCHHHHHHHHHCCCe
Confidence            321   22345564 68999999999999887665544322111   111122457899999999999999999999887


Q ss_pred             cccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          243 CPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       243 ~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      ..+++.+|||++.....+   +..+.++||||+...
T Consensus       198 ~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~  233 (429)
T TIGR03594       198 VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRK  233 (429)
T ss_pred             eecCCCCCceECcEeEEEEECCcEEEEEECCCcccc
Confidence            889999999999653332   457999999999754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.78  E-value=5.1e-18  Score=181.56  Aligned_cols=184  Identities=23%  Similarity=0.202  Sum_probs=125.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD  164 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~  164 (383)
                      +..+.+||....... ..+....+.++....++.+|+||+|+|++.+....+..+..++.  ++|+++|+||+|+.....
T Consensus       322 ~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~  400 (712)
T PRK09518        322 GTDFKLVDTGGWEAD-VEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY  400 (712)
T ss_pred             CEEEEEEeCCCcCCC-CccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh
Confidence            345667775432110 11223445666667899999999999999877766666666653  799999999999865422


Q ss_pred             HHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc
Q 016762          165 RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC  243 (383)
Q Consensus       165 ~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~  243 (383)
                      ..   ..+...| ..++++|+++|.|+.+|.+.+.+....... ...--.....++|+++|.||||||||+|+|++.+..
T Consensus       401 ~~---~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~-~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~  476 (712)
T PRK09518        401 DA---AEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEK-TSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERA  476 (712)
T ss_pred             hH---HHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccc-cccccCCCCCcEEEEECCCCCCHHHHHHHHhCcccc
Confidence            11   1222334 346789999999999986655443322110 000000123578999999999999999999998877


Q ss_pred             ccCCCCCceeEEEEE--Ee-CCcEEEEecCccccC
Q 016762          244 PAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       244 ~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~  275 (383)
                      .+++.||||++....  .. +..+.++||||+...
T Consensus       477 ~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~  511 (712)
T PRK09518        477 VVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRR  511 (712)
T ss_pred             ccCCCCCCCcCcceeEEEECCCEEEEEECCCcccC
Confidence            789999999996432  22 567889999998743

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.68  E-value=4.9e-16  Score=147.07  Aligned_cols=141  Identities=24%  Similarity=0.313  Sum_probs=107.8

Q ss_pred             hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHHH--HHHHHHHHcCCeEEEeeCcCCCch
Q 016762          118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMGT  190 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~--~w~~~l~~~g~~vi~iSa~~g~Gi  190 (383)
                      +...|-++.|+.+-.|..+.+ .|++++     .+...++++||+||++.++..  ++...++..|+.++++|++++.|+
T Consensus        77 v~n~d~~iiIvs~~~P~~~~~-~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~  155 (301)
T COG1162          77 VANNDQAIIVVSLVDPDFNTN-LLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL  155 (301)
T ss_pred             ccccceEEEEEeccCCCCCHH-HHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence            444677777887777765544 345543     367788899999999877655  566778889999999999999998


Q ss_pred             hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCC---C----CceeEEEEEEeCCc
Q 016762          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR---P----GVTRVLKWVRFGKD  263 (383)
Q Consensus       191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~---p----gtT~~~~~~~~~~~  263 (383)
                      ..|...++.                  -...++|.++||||||+|+|.+.....+++.   .    .||++...+.+..+
T Consensus       156 ~~l~~~l~~------------------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g  217 (301)
T COG1162         156 EELAELLAG------------------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG  217 (301)
T ss_pred             HHHHHHhcC------------------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC
Confidence            877655321                  1478999999999999999998655554432   2    49999999999878


Q ss_pred             EEEEecCccccCCC
Q 016762          264 LEFLDSPGIIPMRI  277 (383)
Q Consensus       264 i~l~DTpG~i~~~~  277 (383)
                      -.++|||||-...+
T Consensus       218 G~iiDTPGf~~~~l  231 (301)
T COG1162         218 GWIIDTPGFRSLGL  231 (301)
T ss_pred             CEEEeCCCCCccCc
Confidence            88999999976544

>PRK01889 GTPase RsgA; Reviewed

Probab=99.63  E-value=1.7e-15  Score=149.53  Aligned_cols=144  Identities=19%  Similarity=0.263  Sum_probs=102.9

Q ss_pred             hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHH-HHHHHHHHHHHcCCeEEEeeCcCCCchh
Q 016762          118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~-~~~~w~~~l~~~g~~vi~iSa~~g~Gi~  191 (383)
                      +.++|.++.|+++..++..  ..+++++     .+.+.++|+||+||++.. ....|...+ ..|+.++++|+++|.|+.
T Consensus       110 aANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~  186 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLD  186 (356)
T ss_pred             EEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHH
Confidence            5889999999998633222  2444443     367889999999998753 222333333 457889999999999988


Q ss_pred             hhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCC-------CCceeEEEEEEeCCcE
Q 016762          192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKDL  264 (383)
Q Consensus       192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~-------pgtT~~~~~~~~~~~i  264 (383)
                      +|...+..                 .-+++++|.+|+|||||+|+|.+.....++..       ..+|+..++..+..+.
T Consensus       187 ~L~~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~  249 (356)
T PRK01889        187 VLAAWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGG  249 (356)
T ss_pred             HHHHHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCC
Confidence            87666421                 12589999999999999999998655544433       2367777777777677


Q ss_pred             EEEecCccccCCCCcHH
Q 016762          265 EFLDSPGIIPMRISDQA  281 (383)
Q Consensus       265 ~l~DTpG~i~~~~~~~~  281 (383)
                      .++|||||....+.+..
T Consensus       250 ~l~DtpG~~~~~l~~~~  266 (356)
T PRK01889        250 LLIDTPGMRELQLWDAE  266 (356)
T ss_pred             eecCCCchhhhcccCch
Confidence            89999999766554443

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.55  E-value=1.5e-14  Score=137.13  Aligned_cols=71  Identities=28%  Similarity=0.477  Sum_probs=58.2

Q ss_pred             CCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccCCCCcHHHHHH
Q 016762          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAAAIK  285 (383)
Q Consensus       214 ~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~~~~~~~~~~  285 (383)
                      .+..++|.++||||||||||+++|++.+ ..+++.||||+.++.-++   +..++++||||++....++.+.-.+
T Consensus       165 dp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~  238 (346)
T COG1084         165 DPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER  238 (346)
T ss_pred             CCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHH
Confidence            3456789999999999999999999876 799999999999887665   3478999999999876665444333

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.49  E-value=7.1e-14  Score=122.06  Aligned_cols=95  Identities=25%  Similarity=0.332  Sum_probs=69.2

Q ss_pred             HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcccc
Q 016762          166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA  245 (383)
Q Consensus       166 ~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v  245 (383)
                      +.|.+.+++.|+.++++|++.+.|+.+|++.++.                  .+++++|-++||||||||+|.+.....+
T Consensus         2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~------------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t   63 (161)
T PF03193_consen    2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG------------------KTSVLLGQSGVGKSSLINALLPEAKQKT   63 (161)
T ss_dssp             HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT------------------SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC------------------CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence            4678889999999999999999999887665432                  2589999999999999999998755544


Q ss_pred             CC---C----CCceeEEEEEEeCCcEEEEecCccccCCCC
Q 016762          246 AP---R----PGVTRVLKWVRFGKDLEFLDSPGIIPMRIS  278 (383)
Q Consensus       246 ~~---~----pgtT~~~~~~~~~~~i~l~DTpG~i~~~~~  278 (383)
                      +.   .    -.||++.+++.+..+..|+|||||-...+.
T Consensus        64 ~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~  103 (161)
T PF03193_consen   64 GEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLW  103 (161)
T ss_dssp             S--------------SEEEEEETTSEEEECSHHHHT--GC
T ss_pred             hhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccc
Confidence            32   2    248889999999889999999999765443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.48  E-value=6.7e-14  Score=121.91  Aligned_cols=61  Identities=34%  Similarity=0.541  Sum_probs=46.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccccCCCCc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMRISD  279 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~~~~~  279 (383)
                      ++|++||.||||||||||+|+|++ ..+++.||+|.+...-  .. +..+.++||||+.......
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s   64 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS   64 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence            479999999999999999999987 7899999999997643  33 5679999999997644333

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.47  E-value=6.1e-14  Score=131.83  Aligned_cols=65  Identities=31%  Similarity=0.546  Sum_probs=53.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEe--CCcEEEEecCccccCCCCcHHHHH
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRF--GKDLEFLDSPGIIPMRISDQAAAI  284 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~--~~~i~l~DTpG~i~~~~~~~~~~~  284 (383)
                      -|+|||.||||||||+|+|.|.+.+.++++|.|||+. +.+..  +.++.++|||||..|+ +.....+
T Consensus         8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk-~~l~~~m   75 (298)
T COG1159           8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK-HALGELM   75 (298)
T ss_pred             EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc-hHHHHHH
Confidence            4999999999999999999999999999999999994 33333  4579999999998773 3344444

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.44  E-value=1.8e-13  Score=135.65  Aligned_cols=60  Identities=35%  Similarity=0.488  Sum_probs=53.3

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCcccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP  274 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~  274 (383)
                      ..+++++|+|.||||||||+|+|+++.++.|++.||||||+-...  + |-.+.|+||.|+..
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe  277 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE  277 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCccc
Confidence            457899999999999999999999999999999999999985444  3 56789999999984

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.41  E-value=1.9e-13  Score=135.11  Aligned_cols=59  Identities=39%  Similarity=0.583  Sum_probs=51.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE---EeCCcEEEEecCccccCC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV---RFGKDLEFLDSPGIIPMR  276 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~---~~~~~i~l~DTpG~i~~~  276 (383)
                      +.|+|||.||||||||+|+|++++.+.|+++||+|||...-   ..+..+.++||.|+....
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~   65 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD   65 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC
Confidence            46999999999999999999999999999999999997532   236789999999998644

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.39  E-value=5.4e-13  Score=110.36  Aligned_cols=58  Identities=38%  Similarity=0.633  Sum_probs=49.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccccCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMR  276 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~~  276 (383)
                      +|+++|.||||||||+|+|++.+...+++.+++|++....  .. +..+.++|||||....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~   61 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE   61 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence            5899999999999999999997778899999999998542  33 4567999999998653

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.34  E-value=1.7e-12  Score=116.04  Aligned_cols=60  Identities=30%  Similarity=0.527  Sum_probs=54.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCccccCC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR  276 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~  276 (383)
                      .+.|+++|.+|||||||||+|++++ .+.+|.+||.|+.+..+.+++.+.++|-||+=...
T Consensus        24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAk   84 (200)
T COG0218          24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAK   84 (200)
T ss_pred             CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCccccc
Confidence            4569999999999999999999965 58999999999999999999889999999996543

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=6.2e-12  Score=124.70  Aligned_cols=59  Identities=37%  Similarity=0.537  Sum_probs=52.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~  274 (383)
                      .++.|+|+|.||||||||+|+|+++.+..|++.||||||.-...  + |..++|+||.|+..
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe  328 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE  328 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence            46889999999999999999999999999999999999964333  3 66899999999987

>PTZ00258 GTP-binding protein; Provisional

Probab=99.21  E-value=1.7e-11  Score=121.54  Aligned_cols=59  Identities=36%  Similarity=0.490  Sum_probs=48.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--------------------CCcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--------------------~~~i~l~DTpG~i~~  275 (383)
                      ..++|+|||+||||||||||+|++.+ +.+++.||||+++..-.+                    +..+.++||||++..
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            46789999999999999999999765 799999999998654222                    124899999999954

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.21  E-value=1.4e-11  Score=123.02  Aligned_cols=57  Identities=28%  Similarity=0.389  Sum_probs=48.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--eC--CcEEEEecCccccCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--FG--KDLEFLDSPGIIPMR  276 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~~--~~i~l~DTpG~i~~~  276 (383)
                      .|+|||+||||||||||+|++.+ ..++++||||+++....  .+  ..+.++||||++...
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a  221 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA  221 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence            69999999999999999999876 58999999999976533  33  359999999998653

>TIGR00436 era GTP-binding protein Era

Probab=99.21  E-value=1.7e-11  Score=116.79  Aligned_cols=57  Identities=32%  Similarity=0.537  Sum_probs=47.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE-EEEe--CCcEEEEecCccccC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRF--GKDLEFLDSPGIIPM  275 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~-~~~~--~~~i~l~DTpG~i~~  275 (383)
                      +|+++|+||||||||+|+|++.+...++++|+||++.. .+..  +..+.++||||+...
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~   61 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK   61 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence            58999999999999999999998788999999999853 2222  346899999999854

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.21  E-value=2.9e-11  Score=123.05  Aligned_cols=59  Identities=36%  Similarity=0.487  Sum_probs=50.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~  274 (383)
                      ..++|+++|+||||||||+|+|++.+...+++.||+|++.....  + +..+.++||||+..
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~  275 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE  275 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence            45789999999999999999999887778999999999975433  3 45789999999863

>cd01900 YchF YchF subfamily

Probab=99.17  E-value=2.2e-11  Score=115.72  Aligned_cols=55  Identities=42%  Similarity=0.524  Sum_probs=45.9

Q ss_pred             EeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC------------------cEEEEecCccccC
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK------------------DLEFLDSPGIIPM  275 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~------------------~i~l~DTpG~i~~  275 (383)
                      |+|||+||||||||+|+|++.+. .+++.||||+++..  +.+..                  .+.++||||++..
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~   75 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKG   75 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCC
Confidence            58999999999999999998874 89999999999754  22221                  3899999999964

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.17  E-value=2.7e-11  Score=118.93  Aligned_cols=57  Identities=40%  Similarity=0.546  Sum_probs=48.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC------------------cEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK------------------DLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~------------------~i~l~DTpG~i~~  275 (383)
                      ++|+|||+||||||||+|+|++.+ +.+++.||||+++..  +.+..                  .+.++||||++..
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~   79 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG   79 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence            579999999999999999999877 789999999998753  23222                  4899999999964

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.15  E-value=8.5e-11  Score=111.48  Aligned_cols=59  Identities=34%  Similarity=0.503  Sum_probs=50.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE---EEEeCCcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVRFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~---~~~~~~~i~l~DTpG~i~~  275 (383)
                      ...+|++||+||||||||+|+||+.+ ..+++.||||+.+.   ..+-+-.++++|+||++..
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~g  123 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEG  123 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccC
Confidence            34689999999999999999999876 68999999999963   2233678999999999964

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.12  E-value=7.1e-11  Score=111.03  Aligned_cols=63  Identities=25%  Similarity=0.517  Sum_probs=53.5

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccCCC
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI  277 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~~  277 (383)
                      .+.+.|+++|.||||||||.|.+.|.+.+.++.++.|||+...--+   ..++.++||||++.+..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~  135 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM  135 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccch
Confidence            3567899999999999999999999999999999999999654333   34689999999997643

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.12  E-value=1.4e-10  Score=104.94  Aligned_cols=58  Identities=26%  Similarity=0.404  Sum_probs=47.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCC-CCCceeEEEEEEe---CCcEEEEecCccccCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF---GKDLEFLDSPGIIPMR  276 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~  276 (383)
                      +|++||.||||||||+|+|+|++.+.++. .+++|++.+....   +..+.++||||+....
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~   63 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS   63 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc
Confidence            69999999999999999999987665553 5689998765432   5679999999998654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.11  E-value=4.7e-11  Score=118.48  Aligned_cols=72  Identities=26%  Similarity=0.353  Sum_probs=57.1

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCccccCCCCcHHHHHHHH
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIPMRISDQAAAIKLA  287 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i~~~~~~~~~~~~la  287 (383)
                      +...+..+||||||||||++|.++.. .+.+.+.+|||+.+-.-+++.   .++++||||++.+..++...-.+++
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtra-dvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs  240 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRA-DDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI  240 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhccccccc-ccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence            34567999999999999999999954 578999999999976555543   4689999999988877765544443

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.08  E-value=1.4e-10  Score=113.60  Aligned_cols=57  Identities=35%  Similarity=0.443  Sum_probs=48.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe--CCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~i~l~DTpG~i~~  275 (383)
                      ..|+|||+||||||||||+|++.+ ..+++.||||++++.  +..  +..+.++||||++..
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g  219 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG  219 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence            369999999999999999999765 679999999999764  333  246999999999864

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.08  E-value=8.2e-11  Score=111.15  Aligned_cols=56  Identities=32%  Similarity=0.399  Sum_probs=47.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEEecCccccC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPM  275 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~i~~  275 (383)
                      .|++||+||||||||+|+|+..+ -++++.+|||..++.-.+    ...+.+-|-||+|..
T Consensus       198 dvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~G  257 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEG  257 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCcccccc
Confidence            58999999999999999999776 499999999999764332    234889999999975

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.07  E-value=3.1e-10  Score=115.15  Aligned_cols=60  Identities=38%  Similarity=0.493  Sum_probs=50.6

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCcccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP  274 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~  274 (383)
                      ...++|+++|.||||||||+|+|++.....+++.||||++.....  + +..+.++||||+..
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~  263 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE  263 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence            356789999999999999999999887778999999999975433  3 45689999999964

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.06  E-value=3.1e-10  Score=106.78  Aligned_cols=61  Identities=26%  Similarity=0.361  Sum_probs=51.8

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      ..+++|+++|.||||||||+|+|++...+.+++..++|+..+....   +..+.++|||||...
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~   92 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES   92 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence            3568999999999999999999999887788888888888765443   457899999999865

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.05  E-value=1.9e-10  Score=117.30  Aligned_cols=57  Identities=35%  Similarity=0.491  Sum_probs=47.8

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~  275 (383)
                      ..|+|||+||||||||||+|++.+ ..+++.||||+++..-  .. +..+.++||||++..
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg  219 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG  219 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence            469999999999999999999865 5789999999997643  33 347899999999853

>cd01878 HflX HflX subfamily

Probab=99.05  E-value=7.6e-10  Score=100.48  Aligned_cols=84  Identities=25%  Similarity=0.262  Sum_probs=55.6

Q ss_pred             hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CC-cEEE
Q 016762          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEF  266 (383)
Q Consensus       191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~-~i~l  266 (383)
                      ..+++.++.+.+.+...+..+. .+..++|+++|.+|||||||+|+|++.. +.+.+.+++|.+.....+   +. .+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i   93 (204)
T cd01878          16 AKLRRELEKVKKQRELQRRRRK-RSGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLL   93 (204)
T ss_pred             HHHHHHHHHHHHhHHHHHHhhh-hcCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEE
Confidence            3444444444433322222211 2345789999999999999999999865 466777888887654332   33 7899


Q ss_pred             EecCccccCC
Q 016762          267 LDSPGIIPMR  276 (383)
Q Consensus       267 ~DTpG~i~~~  276 (383)
                      +||||+....
T Consensus        94 ~Dt~G~~~~~  103 (204)
T cd01878          94 TDTVGFIRDL  103 (204)
T ss_pred             eCCCccccCC
Confidence            9999997543

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.03  E-value=4.6e-10  Score=99.97  Aligned_cols=60  Identities=30%  Similarity=0.514  Sum_probs=51.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~  275 (383)
                      +.++|+++|.+|||||||+|+|++.. ...+++.+|+|++...+..+.++.++||||+...
T Consensus        17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~   77 (179)
T TIGR03598        17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYA   77 (179)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccc
Confidence            34689999999999999999999875 4567889999999887776778999999998643

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.03  E-value=2.9e-10  Score=114.41  Aligned_cols=55  Identities=33%  Similarity=0.484  Sum_probs=47.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~i~  274 (383)
                      .|+|||+||||||||||+|++.+ ..+++.||||+++....+    +..+.++||||++.
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie  218 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE  218 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence            69999999999999999999765 578999999999875433    45799999999985

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.02  E-value=5.1e-10  Score=100.55  Aligned_cols=60  Identities=32%  Similarity=0.527  Sum_probs=51.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~  275 (383)
                      ..++|+++|.+|||||||+|+|++.. ...+++.+|+|++++....+.++.++||||+...
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~   83 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYA   83 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCc
Confidence            35689999999999999999999864 5678889999999888777778999999998643

>PRK15494 era GTPase Era; Provisional

Probab=98.98  E-value=1.2e-09  Score=107.47  Aligned_cols=59  Identities=31%  Similarity=0.577  Sum_probs=49.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccccC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~~  275 (383)
                      ..+|++||.||||||||+|+|.+.+...++++++||++...  +.. +.++.++||||+..+
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~  113 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP  113 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence            45899999999999999999999887778999999998543  222 457899999999754

>PRK04213 GTP-binding protein; Provisional

Probab=98.97  E-value=8.4e-10  Score=99.88  Aligned_cols=54  Identities=37%  Similarity=0.588  Sum_probs=47.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~  272 (383)
                      .++|+++|.+|||||||+|+|++.. ..++..||+|++...+..+ ++.++||||+
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~   62 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGF   62 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCcc
Confidence            4689999999999999999999865 6788899999997766655 7999999997

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.97  E-value=5.6e-10  Score=113.04  Aligned_cols=56  Identities=43%  Similarity=0.631  Sum_probs=48.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      +|++||.||||||||+|+|+++..+.+++.||+|++.+...+   +..+.++||||+..
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~   59 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE   59 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC
Confidence            489999999999999999999887789999999999765432   56799999999853

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00089 era GTPase Era; Reviewed

Probab=98.96  E-value=8.3e-10  Score=106.17  Aligned_cols=58  Identities=36%  Similarity=0.601  Sum_probs=48.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE-EEe-C-CcEEEEecCccccCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRF-G-KDLEFLDSPGIIPMR  276 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~-~~~-~-~~i~l~DTpG~i~~~  276 (383)
                      .|+++|.||||||||+|+|+|.+...+++.|.||++... +.. + .++.++||||+..+.
T Consensus         7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~   67 (292)
T PRK00089          7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK   67 (292)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence            599999999999999999999988889999999998532 222 2 478999999997543

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.96  E-value=7.2e-10  Score=108.43  Aligned_cols=57  Identities=35%  Similarity=0.496  Sum_probs=47.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC--CcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~i~l~DTpG~i~~  275 (383)
                      ..|+|||+||||||||||+|++.+ ..+++.||||++++.  +.++  ..+.++||||++..
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~  218 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG  218 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence            369999999999999999999765 578999999998764  3333  57899999999854

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.94  E-value=1.9e-09  Score=103.45  Aligned_cols=60  Identities=25%  Similarity=0.355  Sum_probs=48.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE---eCCcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~---~~~~i~l~DTpG~i~~  275 (383)
                      ...+|+++|.|||||||++|+|+|+..+.++...++|...+...   -+..+.++||||+...
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~   99 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG   99 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence            45789999999999999999999988777777777666543322   2567999999999864

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.94  E-value=1.1e-09  Score=109.66  Aligned_cols=57  Identities=30%  Similarity=0.353  Sum_probs=46.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-------------------------CCcEEEEecC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-------------------------GKDLEFLDSP  270 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-------------------------~~~i~l~DTp  270 (383)
                      ++|+|||+||||||||+|+|++.+ +.+++.||+|+++..-  .+                         .-.+.++|||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a   80 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA   80 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence            479999999999999999999875 6789999999986541  11                         1236799999


Q ss_pred             ccccC
Q 016762          271 GIIPM  275 (383)
Q Consensus       271 G~i~~  275 (383)
                      |++..
T Consensus        81 Gl~~g   85 (396)
T PRK09602         81 GLVPG   85 (396)
T ss_pred             CcCCC
Confidence            99854

>cd01898 Obg Obg subfamily

Probab=98.91  E-value=1.4e-09  Score=95.13  Aligned_cols=55  Identities=33%  Similarity=0.471  Sum_probs=44.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CC-cEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GK-DLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~-~i~l~DTpG~i~  274 (383)
                      .|++||.+|||||||+|+|++.. ..++..||+|++....  .. +. ++.++||||+..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   60 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE   60 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence            48999999999999999999765 4788889999876432  22 33 789999999863

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.90  E-value=2.4e-09  Score=109.89  Aligned_cols=57  Identities=39%  Similarity=0.530  Sum_probs=48.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      .++|+|||.||||||||+|+|++.....+++.||+|++......   +..+.++||||+.
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~   97 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE   97 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence            46799999999999999999998776778999999999765433   4568999999986

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.90  E-value=2.7e-09  Score=110.35  Aligned_cols=57  Identities=35%  Similarity=0.574  Sum_probs=48.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      .+|+++|.||||||||+|+|+|.+ .+|+|-||+|-+...-.+   +..+.++|.||.-.-
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL   63 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSL   63 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCC
Confidence            459999999999999999999876 799999999988654333   667999999999643

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.89  E-value=2.5e-09  Score=93.44  Aligned_cols=55  Identities=40%  Similarity=0.609  Sum_probs=45.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      +|+++|++|||||||+|+|++.. ..+++.+++|++......   +..+.++||||+..
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~   59 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD   59 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence            68999999999999999999865 456778999988765443   24789999999863

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.88  E-value=1.2e-09  Score=104.57  Aligned_cols=56  Identities=36%  Similarity=0.510  Sum_probs=48.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe--CCcEEEEecCccccC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIPM  275 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~--~~~i~l~DTpG~i~~  275 (383)
                      .|++||+||||||||||+++..+ -++++.||||+.+.  .+++  ...+.+-|-||+|.-
T Consensus       161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEG  220 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEG  220 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccc
Confidence            48999999999999999999765 68999999999964  3444  456999999999964

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=2.3e-09  Score=104.19  Aligned_cols=58  Identities=38%  Similarity=0.497  Sum_probs=46.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-------------------CCcEEEEecCccccC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------GKDLEFLDSPGIIPM  275 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-------------------~~~i~l~DTpG~i~~  275 (383)
                      .++++|||.||||||||+|+||... +.+++.||||-++..  +.+                   ...+.++|.+|+++.
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            3579999999999999999999776 889999999998632  111                   123679999999964

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.84  E-value=3.2e-09  Score=107.77  Aligned_cols=57  Identities=44%  Similarity=0.638  Sum_probs=49.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      ++|++||.||||||||+|+|++...+.+++.||+|++.....+   +..+.++||||+..
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~   61 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP   61 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC
Confidence            3699999999999999999998877788999999999764333   56789999999975

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.83  E-value=5.4e-09  Score=89.61  Aligned_cols=58  Identities=36%  Similarity=0.483  Sum_probs=48.2

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      ++|+++|.+|+|||||+|+|++.....+++.+++|++......   +..+.++||||+...
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~   62 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET   62 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence            4799999999999999999998876678899999998754332   346889999998643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.83  E-value=3.2e-09  Score=103.25  Aligned_cols=55  Identities=29%  Similarity=0.338  Sum_probs=44.5

Q ss_pred             EeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-------------------------CCcEEEEecCcc
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSPGI  272 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-------------------------~~~i~l~DTpG~  272 (383)
                      |++||+||||||||+|+|++.. ..+++.||+|+++..  ..+                         .-.+.++||||+
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl   79 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL   79 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence            5899999999999999999765 689999999988643  111                         124789999999


Q ss_pred             ccC
Q 016762          273 IPM  275 (383)
Q Consensus       273 i~~  275 (383)
                      +..
T Consensus        80 v~g   82 (318)
T cd01899          80 VPG   82 (318)
T ss_pred             CCC
Confidence            854

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.83  E-value=4.8e-09  Score=97.83  Aligned_cols=56  Identities=34%  Similarity=0.580  Sum_probs=46.0

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccccC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~~  275 (383)
                      +|+++|+||+|||||+|+|++.. ..+++.||+|.+...  +.. +..+.++||||++..
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~   60 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG   60 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence            58999999999999999999865 568899999987643  222 557889999999754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.82  E-value=4.6e-09  Score=112.92  Aligned_cols=57  Identities=42%  Similarity=0.578  Sum_probs=49.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      .+|+|+|+||||||||+|+|++.+...+++.||+|++......   +..+.++||||+..
T Consensus       276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~  335 (712)
T PRK09518        276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA  335 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence            5799999999999999999999877789999999999765433   45789999999874

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.82  E-value=4.4e-09  Score=100.37  Aligned_cols=60  Identities=35%  Similarity=0.407  Sum_probs=48.8

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--------------------CCcEEEEecCcccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIP  274 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--------------------~~~i~l~DTpG~i~  274 (383)
                      +..++++|||.|||||||++|+|++.+ +.+++.||+|.++..-++                    .-.+.++|..|+++
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSK-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCC-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            345789999999999999999999765 569999999999743221                    22378999999996


Q ss_pred             C
Q 016762          275 M  275 (383)
Q Consensus       275 ~  275 (383)
                      .
T Consensus        97 G   97 (391)
T KOG1491|consen   97 G   97 (391)
T ss_pred             C
Confidence            4

>cd01894 EngA1 EngA1 subfamily

Probab=98.81  E-value=4.1e-09  Score=90.50  Aligned_cols=55  Identities=45%  Similarity=0.663  Sum_probs=45.2

Q ss_pred             eEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       221 ~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      +++|.+|||||||+|+|.+.....++..+++|++......   +..+.++||||+...
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~   58 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD   58 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence            4899999999999999998776678889999988654333   456889999999753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01895 EngA2 EngA2 subfamily

Probab=98.81  E-value=6.2e-09  Score=90.53  Aligned_cols=59  Identities=39%  Similarity=0.558  Sum_probs=48.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccccC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~  275 (383)
                      +++|+++|.+|+|||||+|+|++......++.+++|++....  .. +..+.++||||+...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~   63 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK   63 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence            468999999999999999999987666778889999886432  22 456899999999643

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.81  E-value=6.8e-09  Score=111.81  Aligned_cols=56  Identities=32%  Similarity=0.515  Sum_probs=47.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      .+|+++|.||||||||+|+|+|.+ ..+++.||+|.+......   +..+.++||||+-.
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ys   62 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS   62 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccc
Confidence            579999999999999999999876 589999999998654333   45789999999964

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.80  E-value=3.9e-09  Score=90.91  Aligned_cols=52  Identities=42%  Similarity=0.663  Sum_probs=42.9

Q ss_pred             EeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCcccc
Q 016762          222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~  274 (383)
                      ++|++|||||||+|+|++.. ..++..||+|++.+.  +.. +.++.++||||+..
T Consensus         1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~   55 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYS   55 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccc
Confidence            58999999999999999865 678889999998653  233 45789999999864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.75  E-value=6.9e-09  Score=91.01  Aligned_cols=52  Identities=37%  Similarity=0.526  Sum_probs=42.5

Q ss_pred             EeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee--CCcEEEEecCcccc
Q 016762          222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF--GKDLEFLDSPGIIP  274 (383)
Q Consensus       222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~--~~~i~l~DTpG~i~  274 (383)
                      ++|.+|||||||+|+|++... .+++.+++|++....  ..  +..+.++||||+..
T Consensus         1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~   56 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE   56 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence            589999999999999998764 778899999886432  22  46789999999853

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04163 Era Era subfamily

Probab=98.75  E-value=1.7e-08  Score=86.85  Aligned_cols=59  Identities=36%  Similarity=0.565  Sum_probs=46.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      ..+|+++|.||+|||||+|+|++...+..++.+.+|+.......   +..+.++||||+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~   64 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP   64 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence            35799999999999999999999877677788888877543222   246889999998754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.75  E-value=2.3e-08  Score=103.72  Aligned_cols=61  Identities=23%  Similarity=0.322  Sum_probs=48.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCC-CCceeEEEEEE--eCCcEEEEecCccccCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKWVR--FGKDLEFLDSPGIIPMR  276 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~-pgtT~~~~~~~--~~~~i~l~DTpG~i~~~  276 (383)
                      ...+|+++|.|||||||++|+|+|++.+.++.. ++||+......  -+..+.++|||||....
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~  180 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSA  180 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccc
Confidence            457899999999999999999999887777765 67776533322  25679999999999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.73  E-value=1.7e-08  Score=87.17  Aligned_cols=56  Identities=30%  Similarity=0.549  Sum_probs=47.8

Q ss_pred             EeEeecCCCChhHHHHhhhc-CCccccCCCCCceeEEEEEEeCCcEEEEecCccccC
Q 016762          220 AGIVGYPNVGKSSLINRLLK-RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~-~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~  275 (383)
                      |+++|.+|||||||+|+|++ ......+..+|+|.....+..+..+.++||||+...
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~   58 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYA   58 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCcccc
Confidence            79999999999999999994 334557888999999888877779999999998643

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04171 SelB SelB subfamily

Probab=98.69  E-value=2.9e-08  Score=85.85  Aligned_cols=54  Identities=33%  Similarity=0.529  Sum_probs=40.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCc--cccCCCCCceeEEEEE--Ee--CCcEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWV--RF--GKDLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pgtT~~~~~~--~~--~~~i~l~DTpG~  272 (383)
                      .|+++|.+|||||||+|+|++...  ......+++|.+....  .+  +..+.++||||.
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~   61 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH   61 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh
Confidence            589999999999999999997532  2223457888776432  22  346889999996

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.68  E-value=3.6e-08  Score=90.56  Aligned_cols=62  Identities=27%  Similarity=0.388  Sum_probs=41.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCC-CCCceeEEEEEEe---CCcEEEEecCccccCCCCc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISD  279 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~~~~  279 (383)
                      ++|.++|.|++||||++|+|+|+....++. ...+|...+....   +..+.++|||||......+
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~   66 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD   66 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence            379999999999999999999988766552 3456666554332   6689999999998765433

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00092 GTP-binding protein YchF

Probab=98.65  E-value=3.4e-08  Score=97.26  Aligned_cols=58  Identities=34%  Similarity=0.367  Sum_probs=47.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC------------------CcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~------------------~~i~l~DTpG~i~~  275 (383)
                      ++++|||+||||||||+|+|++.+...+++.||||.++..  +.+.                  ..+.++|.||++..
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g   80 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG   80 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence            5799999999999999999998774389999999998643  3322                  24789999999864

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.61  E-value=8.8e-08  Score=81.20  Aligned_cols=55  Identities=38%  Similarity=0.562  Sum_probs=45.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC---CcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~---~~i~l~DTpG~i  273 (383)
                      ++|+++|++|+|||||+|+|.+.. ...+..+++|++...  +..+   ..+.++||||..
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   61 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE   61 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence            579999999999999999999876 777888999998654  3333   357889999953

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.61  E-value=9.2e-08  Score=88.67  Aligned_cols=60  Identities=18%  Similarity=0.144  Sum_probs=45.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCC-ccccC-CCCCceeEEEEEEe------CCcEEEEecCccccCCC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRR-MCPAA-PRPGVTRVLKWVRF------GKDLEFLDSPGIIPMRI  277 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~-~~pgtT~~~~~~~~------~~~i~l~DTpG~i~~~~  277 (383)
                      ..|+|+|.+|+|||||+|.|++.. ...++ ....+|+.+.....      +..++++||||+.....
T Consensus         8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~   75 (224)
T cd01851           8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER   75 (224)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence            458999999999999999999872 34444 45789998654221      35799999999986644

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.61  E-value=2.7e-08  Score=90.99  Aligned_cols=55  Identities=29%  Similarity=0.347  Sum_probs=41.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCcccc------------------------------CCCCCceeEEEEEEe---CCcEE
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GKDLE  265 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v------------------------------~~~pgtT~~~~~~~~---~~~i~  265 (383)
                      +|+++|.+|+|||||+|+|+....+.+                              +...|+|++.....+   +..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            489999999999999999975433322                              113788998754443   55789


Q ss_pred             EEecCccc
Q 016762          266 FLDSPGII  273 (383)
Q Consensus       266 l~DTpG~i  273 (383)
                      |+||||..
T Consensus        81 liDTpG~~   88 (208)
T cd04166          81 IADTPGHE   88 (208)
T ss_pred             EEECCcHH
Confidence            99999974

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.61  E-value=6.2e-08  Score=84.37  Aligned_cols=54  Identities=22%  Similarity=0.413  Sum_probs=41.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe------CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~------~~~i~l~DTpG~i  273 (383)
                      .|+++|.+|||||||+|+|++.. ......+++|.+.....+      +..+.++||||..
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~   61 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE   61 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence            58999999999999999999654 445566788887643222      3468999999973

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK09866 hypothetical protein; Provisional

Probab=98.55  E-value=1.5e-07  Score=97.52  Aligned_cols=87  Identities=17%  Similarity=0.180  Sum_probs=61.6

Q ss_pred             hhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEE
Q 016762          192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFL  267 (383)
Q Consensus       192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~  267 (383)
                      .+++.++.+.......++.      .+.++++|++|+|||||+|+|.|.....+++.+++|. +.+++.    ...+++.
T Consensus        50 ~i~~ri~~L~~~L~Kv~~~------~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l-pT~i~~~pg~re~~L~~  122 (741)
T PRK09866         50 NIAERHAMLNNELRKISRL------EMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL-PTLIRHTPGQKEPVLHF  122 (741)
T ss_pred             HHHHHHHHHHHHHHHHhcc------ceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc-cEEEEecCCcCceeeec
Confidence            4455555555443333222      2679999999999999999999998888889999998 555544    2346789


Q ss_pred             ecCcccc----CCCCcHHHHHH
Q 016762          268 DSPGIIP----MRISDQAAAIK  285 (383)
Q Consensus       268 DTpG~i~----~~~~~~~~~~~  285 (383)
                      ||+|||.    ..++....+++
T Consensus       123 dtvgfI~~ll~~Lp~~Lv~~f~  144 (741)
T PRK09866        123 SHVAPIDCLIQQLQQRLRDCDI  144 (741)
T ss_pred             CCccchHHHHHHhhHHHHHhhh
Confidence            9999998    44444444443

>cd01861 Rab6 Rab6 subfamily

Probab=98.55  E-value=1.3e-07  Score=81.88  Aligned_cols=53  Identities=19%  Similarity=0.263  Sum_probs=40.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--EeCC---cEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RFGK---DLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~~~---~i~l~DTpG~  272 (383)
                      +|+++|++|||||||+|+|++.+ ...+..|++|.+....  ..+.   .+.++||||-
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~   59 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDT-FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ   59 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC-CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence            68999999999999999999765 3456678888775432  2222   4789999995

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04171 SelB SelB subfamily

Probab=98.52  E-value=6.2e-07  Score=77.47  Aligned_cols=104  Identities=18%  Similarity=0.223  Sum_probs=68.5

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHHhcCCCeEEEEEccCCCCHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMISMA  163 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~---l~~~l~~k~~ilVlNK~DL~~~~  163 (383)
                      +..+.+||.        ||| .++.+.+...+..+|++++|+|++........+   +......+|+++++||+|+....
T Consensus        50 ~~~~~~~Dt--------pG~-~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~  120 (164)
T cd04171          50 GKRLGFIDV--------PGH-EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED  120 (164)
T ss_pred             CcEEEEEEC--------CCh-HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH
Confidence            345677874        343 445555566788999999999998643222222   11122335899999999998753


Q ss_pred             H----HHHHHHHHHH---cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          164 D----RNAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       164 ~----~~~w~~~l~~---~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .    ...+.+.+..   .+..++++|+++|.|++++.+.+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         121 WLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            2    2334444544   3467899999999999988766543

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.52  E-value=4.9e-07  Score=81.20  Aligned_cols=97  Identities=26%  Similarity=0.212  Sum_probs=68.5

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH---HHHHHHHHH-HHcC
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA---DRNAWATYF-AKQG  176 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~---~~~~w~~~l-~~~g  176 (383)
                      .||| .++.+.+...+..+|+++.|+|+..+......+....+  .+.|+++++||+|+...+   ..+++.+.+ +..+
T Consensus        77 tPG~-~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   77 TPGH-EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             ESSS-HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccc-cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            4787 55778888889999999999999987655444433333  378899999999999432   123333233 2222


Q ss_pred             ------CeEEEeeCcCCCchhhhhHHHHHh
Q 016762          177 ------TKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       177 ------~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                            ..++++|+.+|.|+..|.+.+.++
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~  185 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVEL  185 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHh
Confidence                  358999999999999988777654

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.52  E-value=8.5e-07  Score=77.55  Aligned_cols=93  Identities=19%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcC--CeEEEeeCcC
Q 016762          109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG--TKVIFSNGQL  186 (383)
Q Consensus       109 ~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g--~~vi~iSa~~  186 (383)
                      ...+.+...++.+|+++.|+|+..+.+.....+.....++|+++++||+|+... ....+.+.+.+.+  .+++++|+++
T Consensus        53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa~~  131 (158)
T PRK15467         53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNSHD  131 (158)
T ss_pred             HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEECCC
Confidence            344555556899999999999988766655555554456899999999999643 2334444455555  3789999999


Q ss_pred             CCchhhhhHHHHHhhh
Q 016762          187 GMGTMKLSRLAKALAS  202 (383)
Q Consensus       187 g~Gi~~L~~~l~~l~~  202 (383)
                      |.|+.+|.+.+.++..
T Consensus       132 g~gi~~l~~~l~~~~~  147 (158)
T PRK15467        132 PQSVQQLVDYLASLTK  147 (158)
T ss_pred             ccCHHHHHHHHHHhch
Confidence            9999999887766553

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.47  E-value=1e-06  Score=81.68  Aligned_cols=97  Identities=14%  Similarity=0.010  Sum_probs=68.4

Q ss_pred             CchHHHHHHHHHHHHhh--hcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHH----HHHH
Q 016762          103 YPGHIAKTEKELKDQLK--LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT----YFAK  174 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~id--r~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~----~l~~  174 (383)
                      .||| +++.+.+..-+.  .+|+++.|+|++.+......++..++.  ++|.++|+||+|+++......-.+    .+..
T Consensus        91 tpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~  169 (224)
T cd04165          91 LAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILKV  169 (224)
T ss_pred             CCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhcC
Confidence            4888 555555554453  789999999998877655555544443  789999999999987754433322    3321


Q ss_pred             c--------------------------CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          175 Q--------------------------GTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       175 ~--------------------------g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .                          ..+++.+|+.+|.|++.|.+.|..|
T Consensus       170 ~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l  221 (224)
T cd04165         170 PGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL  221 (224)
T ss_pred             CCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence            1                          1267889999999999998888765

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.46  E-value=9.5e-08  Score=89.31  Aligned_cols=63  Identities=27%  Similarity=0.310  Sum_probs=45.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE----EEEEEeCCcEEEEecCccccCCCCc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPMRISD  279 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~----~~~~~~~~~i~l~DTpG~i~~~~~~  279 (383)
                      .+++|.++|.|+||||||||+|.......++..+-+|..    .+.+. ++++.|.||||+=...-.|
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D  104 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKD  104 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhh
Confidence            577899999999999999999997655555554433333    23322 4789999999997654444

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.43  E-value=2.8e-07  Score=83.60  Aligned_cols=58  Identities=22%  Similarity=0.161  Sum_probs=39.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccC-C---CCCceeEEEEEEe--CCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-P---RPGVTRVLKWVRF--GKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-~---~pgtT~~~~~~~~--~~~i~l~DTpG~i~~  275 (383)
                      ++|+++|.+|||||||+|+|++......+ .   ...+|.....+..  ..++.++||||+-..
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~   65 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST   65 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence            57999999999999999999985322111 1   1224544443332  247899999999643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.42  E-value=2.7e-07  Score=97.07  Aligned_cols=51  Identities=43%  Similarity=0.642  Sum_probs=42.5

Q ss_pred             ecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          224 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       224 G~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      |+||||||||+|+|++.+ ..+++.||+|.+.....+   +.++.++||||....
T Consensus         1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~   54 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL   54 (591)
T ss_pred             CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence            899999999999999875 589999999999754332   456899999999643

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01863 Rab18 Rab18 subfamily

Probab=98.40  E-value=7.1e-07  Score=77.25  Aligned_cols=56  Identities=27%  Similarity=0.321  Sum_probs=40.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||+|+|++.... ...+.++.+.....+..+.   .+.++||||.-
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   60 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence            36999999999999999999976532 2455556655555444432   47899999953

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd00154 Rab Rab family

Probab=98.39  E-value=4.9e-07  Score=77.04  Aligned_cols=56  Identities=23%  Similarity=0.335  Sum_probs=38.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||+|+|.+...... .+..+.+.....+...   ..+.++||||..
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~   60 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE   60 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence            3699999999999999999997653332 2333444444444432   357899999974

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.38  E-value=3.8e-07  Score=90.19  Aligned_cols=60  Identities=22%  Similarity=0.381  Sum_probs=48.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC----Ccc-----------ccCCCCC---ceeEEEEE-------EeC----CcEEE
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR----RMC-----------PAAPRPG---VTRVLKWV-------RFG----KDLEF  266 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~----~~~-----------~v~~~pg---tT~~~~~~-------~~~----~~i~l  266 (383)
                      ..+.|++||..|+|||||||++++.    +..           .+++.+|   +|.++.++       ...    .++.|
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4578999999999999999999986    444           5788899   88887652       223    57899


Q ss_pred             EecCccccC
Q 016762          267 LDSPGIIPM  275 (383)
Q Consensus       267 ~DTpG~i~~  275 (383)
                      +|||||...
T Consensus        96 IDcvG~~v~  104 (492)
T TIGR02836        96 VDCVGYTVK  104 (492)
T ss_pred             EECCCcccC
Confidence            999999753

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd01894 EngA1 EngA1 subfamily

Probab=98.38  E-value=4.2e-06  Score=71.59  Aligned_cols=108  Identities=20%  Similarity=0.203  Sum_probs=74.1

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD  164 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~  164 (383)
                      +..+.+||..-.... .+.-.+...+.....+..+|++++|+|++.+....+.++.+++.  +.|+++|+||+|+.....
T Consensus        44 ~~~~~i~DtpG~~~~-~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~  122 (157)
T cd01894          44 GREFILIDTGGIEPD-DEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEED  122 (157)
T ss_pred             CeEEEEEECCCCCCc-hhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHH
Confidence            456788885432211 11011223444556789999999999999887777766666654  689999999999987654


Q ss_pred             HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762          165 RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       165 ~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      .   ...+.+.+. .++++|+++|.|+.++.+.+.
T Consensus       123 ~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (157)
T cd01894         123 E---AAEFYSLGFGEPIPISAEHGRGIGDLLDAIL  154 (157)
T ss_pred             H---HHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence            4   223334454 688999999999988866554

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PLN03118 Rab family protein; Provisional

Probab=98.38  E-value=7.6e-07  Score=81.38  Aligned_cols=57  Identities=28%  Similarity=0.401  Sum_probs=41.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|+|++.......+..|.+.....+.++.   .+.|+||||..
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   73 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE   73 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCch
Confidence            5789999999999999999999765434444555544444444432   46899999974

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.38  E-value=6.7e-07  Score=77.50  Aligned_cols=55  Identities=25%  Similarity=0.395  Sum_probs=40.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeC---CcEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG---KDLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~---~~i~l~DTpG~  272 (383)
                      ++|+++|.+|||||||+|+|++.+... ..+..|.+.....+.++   ..+.++||||-
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~   60 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ   60 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence            479999999999999999999776433 44555654444444443   25679999995

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.37  E-value=3.6e-07  Score=80.91  Aligned_cols=55  Identities=29%  Similarity=0.416  Sum_probs=39.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCcccc---------------CCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPA---------------APRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v---------------~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      +|+++|.+|+|||||+|+|++......               ....|+|.+......   +..+.++||||..
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~   73 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE   73 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH
Confidence            489999999999999999987643321               123566766544333   3468899999975

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01889 SelB_euk SelB subfamily

Probab=98.37  E-value=3.5e-07  Score=82.35  Aligned_cols=56  Identities=27%  Similarity=0.437  Sum_probs=40.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCC------ccccCCCCCceeEEEEE--Ee---------------CCcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTRVLKWV--RF---------------GKDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~------~~~v~~~pgtT~~~~~~--~~---------------~~~i~l~DTpG~i  273 (383)
                      ++|+++|.+|+|||||+|+|++..      ....+..+|+|.+....  .+               +..+.++||||..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence            369999999999999999999631      12334567888886432  11               3368899999973

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.37  E-value=4.1e-06  Score=71.84  Aligned_cols=90  Identities=20%  Similarity=0.221  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCC-CHHHHHHHHHHHHHcC-CeEEEeeCc
Q 016762          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI-SMADRNAWATYFAKQG-TKVIFSNGQ  185 (383)
Q Consensus       108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~-~~~~~~~w~~~l~~~g-~~vi~iSa~  185 (383)
                      ..+.+.+-.....+|+|+++.|+..+.....+.+...+ ++|+|-|+||+|+. +.++.+.-.++++..| .+++.+|+.
T Consensus        51 ~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~  129 (143)
T PF10662_consen   51 PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAV  129 (143)
T ss_pred             HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECC
Confidence            45566666677899999999999999888888888776 58999999999999 4455555556677777 457889999


Q ss_pred             CCCchhhhhHHHH
Q 016762          186 LGMGTMKLSRLAK  198 (383)
Q Consensus       186 ~g~Gi~~L~~~l~  198 (383)
                      +|.|+++|++.|+
T Consensus       130 ~~eGi~eL~~~L~  142 (143)
T PF10662_consen  130 TGEGIEELKDYLE  142 (143)
T ss_pred             CCcCHHHHHHHHh
Confidence            9999999988775

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.37  E-value=4e-06  Score=71.16  Aligned_cols=82  Identities=15%  Similarity=0.052  Sum_probs=58.2

Q ss_pred             HHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH-HHHHHHHHHHcCC-eEEEeeCcCCCchhh
Q 016762          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD-RNAWATYFAKQGT-KVIFSNGQLGMGTMK  192 (383)
Q Consensus       115 ~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~-~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~  192 (383)
                      ...++.+|+++.|+|+.++.+.....+.... .+|.++|+||+||.+... .+.-.++++..+. .++.+|+++|.|+++
T Consensus        57 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  135 (142)
T TIGR02528        57 IVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEA  135 (142)
T ss_pred             HHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHH
Confidence            3458999999999999988877665554443 469999999999975322 1111223344454 688899999999988


Q ss_pred             hhHHH
Q 016762          193 LSRLA  197 (383)
Q Consensus       193 L~~~l  197 (383)
                      +.+.+
T Consensus       136 l~~~l  140 (142)
T TIGR02528       136 LVDYL  140 (142)
T ss_pred             HHHHH
Confidence            76543

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01868 Rab11_like Rab11-like

Probab=98.36  E-value=7.2e-07  Score=77.64  Aligned_cols=55  Identities=16%  Similarity=0.317  Sum_probs=38.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      .+|+++|.||||||||+|+|.+.+ ......|.++.+..  .+..+.   .+.++||||..
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~   63 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE   63 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence            579999999999999999999765 33334455544432  233332   46799999974

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd00880 Era_like Era (E

Probab=98.36  E-value=4.6e-07  Score=76.73  Aligned_cols=55  Identities=33%  Similarity=0.448  Sum_probs=44.9

Q ss_pred             EeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEEecCccccCC
Q 016762          222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPMR  276 (383)
Q Consensus       222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~i~~~  276 (383)
                      ++|.+|+|||||+|+|++......+..+++|.+......    ...+.++||||+....
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~   59 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG   59 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc
Confidence            589999999999999998776668888898888665443    4579999999997543

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.35  E-value=3.6e-07  Score=79.95  Aligned_cols=48  Identities=27%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccccC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~  275 (383)
                      +|+++|.+|||||||+|+|.+....  .   ..|....+   ... -++||||+...
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~v~~---~~~-~~iDtpG~~~~   50 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQAVEF---NDK-GDIDTPGEYFS   50 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceEEEE---CCC-CcccCCccccC
Confidence            5999999999999999999976421  1   23333332   111 26999998643

>cd01866 Rab2 Rab2 subfamily

Probab=98.35  E-value=1.1e-06  Score=76.98  Aligned_cols=55  Identities=25%  Similarity=0.383  Sum_probs=38.2

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeCC---cEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~i~l~DTpG~  272 (383)
                      .+|++||.||||||||+|++++...... ....|.+.....+..+.   .+.++||||-
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~   63 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ   63 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence            5899999999999999999997653222 22334444434444432   5789999994

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01889 SelB_euk SelB subfamily

Probab=98.35  E-value=6.9e-06  Score=73.84  Aligned_cols=106  Identities=20%  Similarity=0.242  Sum_probs=69.9

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH--HhcCCCeEEEEEccCCCCH
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ--WLGNRKRILVLNREDMISM  162 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~--~l~~k~~ilVlNK~DL~~~  162 (383)
                      ..+..+.+||.        ||| ..+.+.+...+..+|.++.|+|++.+......+...  ...+.|+++++||+|+...
T Consensus        65 ~~~~~~~i~Dt--------pG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~  135 (192)
T cd01889          65 EENLQITLVDC--------PGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE  135 (192)
T ss_pred             ccCceEEEEEC--------CCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence            34567788884        444 345566666678899999999998754332221111  1236799999999999854


Q ss_pred             HH----HHHHHHHHHH-------cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          163 AD----RNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       163 ~~----~~~w~~~l~~-------~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ..    .+.+.+.+..       .+..++++|+++|.|+.+|.+.+..
T Consensus       136 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~  183 (192)
T cd01889         136 EERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNN  183 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHh
Confidence            43    2223232221       2457899999999999998777654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01890 LepA LepA subfamily

Probab=98.34  E-value=6.9e-06  Score=72.37  Aligned_cols=101  Identities=20%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHH
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMA  163 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~~  163 (383)
                      .+..+.+||.        ||| .++.......+..+|+++.|+|+..+....... +..+. .++|+++|+||+|+....
T Consensus        65 ~~~~~~l~Dt--------~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~  135 (179)
T cd01890          65 QEYLLNLIDT--------PGH-VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD  135 (179)
T ss_pred             CcEEEEEEEC--------CCC-hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence            4556677874        333 445556667789999999999998765443332 22222 368999999999996432


Q ss_pred             H---HHHHHHHHHHcCC---eEEEeeCcCCCchhhhhHHHH
Q 016762          164 D---RNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       164 ~---~~~w~~~l~~~g~---~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      .   ...+.+   ..+.   .++.+|+++|.|+.+|.+.+.
T Consensus       136 ~~~~~~~~~~---~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  173 (179)
T cd01890         136 PERVKQQIED---VLGLDPSEAILVSAKTGLGVEDLLEAIV  173 (179)
T ss_pred             HHHHHHHHHH---HhCCCcccEEEeeccCCCCHHHHHHHHH
Confidence            1   122222   2233   478999999999988866554

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00436 era GTP-binding protein Era

Probab=98.34  E-value=4.1e-06  Score=79.77  Aligned_cols=92  Identities=15%  Similarity=0.053  Sum_probs=65.3

Q ss_pred             HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHc-C-CeEEEeeCc
Q 016762          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-G-TKVIFSNGQ  185 (383)
Q Consensus       110 ~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~-g-~~vi~iSa~  185 (383)
                      +.+.....++.+|++++|+|+..+.... ..+...+  .++|.++|+||+|+..+.....+...+.+. + ..++++|++
T Consensus        69 ~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~  147 (270)
T TIGR00436        69 MMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISAL  147 (270)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecC
Confidence            3444567789999999999998765443 3333333  368999999999998766544333333332 2 368999999


Q ss_pred             CCCchhhhhHHHHHhhh
Q 016762          186 LGMGTMKLSRLAKALAS  202 (383)
Q Consensus       186 ~g~Gi~~L~~~l~~l~~  202 (383)
                      +|.|+.+|.+.+.+...
T Consensus       148 ~g~gi~~L~~~l~~~l~  164 (270)
T TIGR00436       148 TGDNTSFLAAFIEVHLP  164 (270)
T ss_pred             CCCCHHHHHHHHHHhCC
Confidence            99999999888766543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04154 Arl2 Arl2 subfamily

Probab=98.34  E-value=9.7e-07  Score=77.83  Aligned_cols=56  Identities=27%  Similarity=0.456  Sum_probs=38.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+.......+..|....  .+.. +..+.++||||--
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~   69 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYEGYKLNIWDVGGQK   69 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCEEEEEEECCCCH
Confidence            346899999999999999999997644334444443222  2222 3457899999963

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.33  E-value=4.5e-06  Score=76.02  Aligned_cols=103  Identities=16%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-C-cHHHHHHh--cCCCeEEEEEccCCCCHH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-T-HPLMDQWL--GNRKRILVLNREDMISMA  163 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~-~-~~~l~~~l--~~k~~ilVlNK~DL~~~~  163 (383)
                      ..+.+||.        ||| ..+.+.+...+..+|+++.|+|+..+... . ...+..+.  ..+|+++|+||+|+....
T Consensus        83 ~~i~~iDt--------PG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~  153 (203)
T cd01888          83 RHVSFVDC--------PGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEE  153 (203)
T ss_pred             cEEEEEEC--------CCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHH
Confidence            44667774        565 45666777778889999999999874221 1 22232222  234789999999998754


Q ss_pred             HHHH----HHHHHHH---cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          164 DRNA----WATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       164 ~~~~----w~~~l~~---~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ....    ..+.+..   .+..++++|+++|.|+.+|.+.+.+
T Consensus       154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~  196 (203)
T cd01888         154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK  196 (203)
T ss_pred             HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence            3322    2222322   2456899999999999988777654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG1249 consensus Predicted GTPases [General function prediction only]

Probab=98.31  E-value=9.9e-07  Score=88.88  Aligned_cols=131  Identities=23%  Similarity=0.308  Sum_probs=83.4

Q ss_pred             HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHc--C--------C-----
Q 016762          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ--G--------T-----  177 (383)
Q Consensus       113 ~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~--g--------~-----  177 (383)
                      +..+..++.-++..++|..+-..+..+.+...+..+..++..||+|+.+.+........+...  +        .     
T Consensus       103 ~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~  182 (572)
T KOG1249|consen  103 EKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPD  182 (572)
T ss_pred             hhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcc
Confidence            333455665677777787665566677777777767789999999999877533332222211  1        0     


Q ss_pred             ----eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc----------
Q 016762          178 ----KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC----------  243 (383)
Q Consensus       178 ----~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~----------  243 (383)
                          .+..++++.|.|+++|.-.+.....       -++      -+.++|.+||||||++|+|+.+..+          
T Consensus       183 ~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-------f~G------df~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~  249 (572)
T KOG1249|consen  183 FDFDHVDLIRAKTGYGIEELIVMLVDIVD-------FRG------DFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDR  249 (572)
T ss_pred             cchhhhhhhhhhhcccHHHHHHHhhheee-------ccC------ceeeeeecccchhhHHHHHhhhccccccccceeee
Confidence                1123456667777665333322211       111      2789999999999999999976544          


Q ss_pred             -ccCCCCCceeEEE
Q 016762          244 -PAAPRPGVTRVLK  256 (383)
Q Consensus       244 -~v~~~pgtT~~~~  256 (383)
                       ..++-||||....
T Consensus       250 aT~~dwpgTtlsll  263 (572)
T KOG1249|consen  250 ATISDWPGTTLSLL  263 (572)
T ss_pred             eecccCCccccchh
Confidence             3567788888753

>cd04155 Arl3 Arl3 subfamily

Probab=98.31  E-value=1.2e-06  Score=76.82  Aligned_cols=57  Identities=23%  Similarity=0.291  Sum_probs=39.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i  273 (383)
                      ...+|+++|.+|||||||+|+|.+.......+..|.+...... .+..+.++||||..
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~   69 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-DGFKLNVWDIGGQR   69 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence            3578999999999999999999986433344444544332111 14568899999963

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01850 CDC_Septin CDC/Septin

Probab=98.30  E-value=1.3e-06  Score=83.48  Aligned_cols=59  Identities=22%  Similarity=0.310  Sum_probs=39.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCC--------CCCce-eEEEEEEe--C---CcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP--------RPGVT-RVLKWVRF--G---KDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~--------~pgtT-~~~~~~~~--~---~~i~l~DTpG~i~  274 (383)
                      ..++|++||-+|+|||||+|+|.+........        ...|+ .......+  +   -++.++|||||-.
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd   75 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD   75 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence            35789999999999999999999876444322        22332 22222222  2   2488999999964

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.30  E-value=7.6e-07  Score=77.54  Aligned_cols=55  Identities=22%  Similarity=0.218  Sum_probs=36.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCcc---ccCCCCCceeEEE--EEEe-CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~---~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|+|++....   .......+|....  .+.. +..+.++||||..
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~   61 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE   61 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh
Confidence            4899999999999999999864321   1122334444432  2333 3568899999974

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01895 EngA2 EngA2 subfamily

Probab=98.28  E-value=1.7e-05  Score=68.74  Aligned_cols=84  Identities=17%  Similarity=0.255  Sum_probs=62.5

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH--HHHHHHHHHHHHc-----CCeEEEeeCcC
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYFAKQ-----GTKVIFSNGQL  186 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~w~~~l~~~-----g~~vi~iSa~~  186 (383)
                      ..+..+|+++.|+|+..+.+.....+....  .++|+++++||+|+.+.  .....+.+.+.+.     +..++++|++.
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT  159 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence            457899999999999988776655544443  37899999999999876  4445555555432     25688999999


Q ss_pred             CCchhhhhHHHHH
Q 016762          187 GMGTMKLSRLAKA  199 (383)
Q Consensus       187 g~Gi~~L~~~l~~  199 (383)
                      +.|+.++.+.+.+
T Consensus       160 ~~~i~~~~~~l~~  172 (174)
T cd01895         160 GQGVDKLFDAIDE  172 (174)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999888766554

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.27  E-value=8.5e-07  Score=89.92  Aligned_cols=57  Identities=28%  Similarity=0.391  Sum_probs=43.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcccc------------------------------CCCCCceeEEEEEEe---CC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK  262 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v------------------------------~~~pgtT~~~~~~~~---~~  262 (383)
                      ..++|+++|.+|+|||||+|+|+.......                              +..+|+|++.....+   +.
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~   84 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY   84 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence            457899999999999999999984322211                              126899999876555   44


Q ss_pred             cEEEEecCcc
Q 016762          263 DLEFLDSPGI  272 (383)
Q Consensus       263 ~i~l~DTpG~  272 (383)
                      .+.++||||.
T Consensus        85 ~i~liDtpG~   94 (425)
T PRK12317         85 YFTIVDCPGH   94 (425)
T ss_pred             EEEEEECCCc
Confidence            6899999996

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.27  E-value=1e-05  Score=79.98  Aligned_cols=107  Identities=15%  Similarity=0.182  Sum_probs=69.8

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH----HHHHHhc--CCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~----~l~~~l~--~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||.... .+..|.++....+.+.+.+..+|+|++|+|+.++....+.    .+...+.  ++|+++|+||+|+.+
T Consensus       237 ~~i~l~DT~G~-~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~  315 (351)
T TIGR03156       237 GEVLLTDTVGF-IRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD  315 (351)
T ss_pred             ceEEEEecCcc-cccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence            45667775422 1234544444444555678999999999999887654332    1111222  689999999999987


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       162 ~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ......+    ......++++|+++|.|+++|.+.+.+
T Consensus       316 ~~~v~~~----~~~~~~~i~iSAktg~GI~eL~~~I~~  349 (351)
T TIGR03156       316 EPRIERL----EEGYPEAVFVSAKTGEGLDLLLEAIAE  349 (351)
T ss_pred             hHhHHHH----HhCCCCEEEEEccCCCCHHHHHHHHHh
Confidence            5443221    222345789999999999988776643

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.27  E-value=1.4e-06  Score=75.37  Aligned_cols=54  Identities=20%  Similarity=0.167  Sum_probs=38.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||+|++.+..  .+...+.++.+..  ...++.   .+.++||||..
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   61 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE   61 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence            589999999999999999998654  2444455554422  222332   46789999964

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.26  E-value=1.4e-06  Score=75.38  Aligned_cols=53  Identities=21%  Similarity=0.357  Sum_probs=37.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeC--CcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~--~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|++.+.......+..|.+.  ..+..+  ..+.++||||.-
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~   55 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQE   55 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeCCceEEEEEECCCCH
Confidence            48999999999999999999876444333334332  223333  358899999974

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.26  E-value=1.7e-06  Score=76.56  Aligned_cols=54  Identities=20%  Similarity=0.302  Sum_probs=38.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      .+|+++|++|||||||+|+|++.......++.|.+..  .+.. +..+.++||||.-
T Consensus        16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~G~~   70 (174)
T cd04153          16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYKNIRFLMWDIGGQE   70 (174)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCeEEEEEECCCCH
Confidence            5799999999999999999986554444444444432  2233 3468999999974

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.25  E-value=2.5e-06  Score=74.67  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=37.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcccc--CCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v--~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|++.+.+ ...  .+..|.+.....+..+.   .+.+.||||-.
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~   63 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE   63 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence            3689999999999999999999754 222  22233333333344432   46799999953

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04163 Era Era subfamily

Probab=98.24  E-value=2.6e-05  Score=66.79  Aligned_cols=111  Identities=21%  Similarity=0.201  Sum_probs=77.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHH--HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC-
Q 016762           86 LDADLYYWTKSLRPVQWYPGHI--AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-  160 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~--~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~-  160 (383)
                      .+.++++||..   ..-.+.+.  ..+.+.....+..+|++++|+|+..+.......+.+.+.  +.|.++|+||+|+. 
T Consensus        49 ~~~~~~liDtp---G~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~  125 (168)
T cd04163          49 DDAQIIFVDTP---GIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK  125 (168)
T ss_pred             CCeEEEEEECC---CCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence            45678888843   22222211  223334456789999999999999885555555555444  48999999999998 


Q ss_pred             CHHHHHHHHHHHHHcC--CeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~~~~w~~~l~~~g--~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .......+...+....  ..++.+|++.+.|+.++.+.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~  166 (168)
T cd04163         126 DKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVK  166 (168)
T ss_pred             cHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHh
Confidence            5666677777776654  57888999999999888776654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.24  E-value=1.7e-06  Score=74.66  Aligned_cols=53  Identities=21%  Similarity=0.324  Sum_probs=38.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|++++.......+..|.+.+.  +.. +..+.++||||..
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~   54 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYKNVSFTVWDVGGQD   54 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEECCEEEEEEECCCCh
Confidence            4899999999999999999987633344444544432  222 4468999999975

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>COG1159 Era GTPase [General function prediction only]

Probab=98.24  E-value=9e-06  Score=77.08  Aligned_cols=115  Identities=18%  Similarity=0.189  Sum_probs=82.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHH--HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHI--AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~--~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~  161 (383)
                      .+...|..|   +|.=..|.|.  +...+.....+..+|+||+|+|+..+.+..+..+.+.+.  +.|+++++||+|..+
T Consensus        52 ~~~QiIfvD---TPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~  128 (298)
T COG1159          52 DNAQIIFVD---TPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK  128 (298)
T ss_pred             CCceEEEEe---CCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence            355555555   3333345442  234445557789999999999999988887776666554  469999999999998


Q ss_pred             HHH-HHHHHHHHHHcC--CeEEEeeCcCCCchhhhhHHHHHhhhh
Q 016762          162 MAD-RNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKALASD  203 (383)
Q Consensus       162 ~~~-~~~w~~~l~~~g--~~vi~iSa~~g~Gi~~L~~~l~~l~~~  203 (383)
                      ++. +....+++....  ..++++|+.+|.|+..|.+.+.+....
T Consensus       129 ~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         129 PKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             cHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence            776 455555555443  478999999999999998888776543

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.24  E-value=2e-06  Score=74.52  Aligned_cols=54  Identities=26%  Similarity=0.346  Sum_probs=36.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC---CcEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~i~l~DTpG~  272 (383)
                      ++|+++|.+|||||||+|+|.+... .....|..+.+.  ..+.++   -.+.++||||.
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~   59 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH   59 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCcc
Confidence            3799999999999999999997652 223333333332  223332   35779999996

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.24  E-value=1.4e-06  Score=78.59  Aligned_cols=55  Identities=24%  Similarity=0.378  Sum_probs=38.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccC---------------CCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAA---------------PRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~---------------~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|+|++.......               ...|+|.+.....+   +..+.++||||.-
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~   76 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA   76 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH
Confidence            6999999999999999999863211111               12566666543333   3468899999975

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.24  E-value=2e-06  Score=76.88  Aligned_cols=55  Identities=20%  Similarity=0.287  Sum_probs=37.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..+|+++|.+|||||||+|+|.+.....+.+..+.|.  ..+.. +..+.++||||..
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~   72 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGNIKFTTFDLGGHQ   72 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECCEEEEEEECCCCH
Confidence            4679999999999999999999765333333333322  22222 3467899999975

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.24  E-value=1.6e-06  Score=78.70  Aligned_cols=56  Identities=25%  Similarity=0.427  Sum_probs=41.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC------Ccc---------ccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~------~~~---------~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ++|+++|++|+|||||+|+|++.      ...         ......|+|.+......   +..+.++||||..
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   76 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   76 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence            57999999999999999999853      100         11125788888755444   4568999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04157 Arl6 Arl6 subfamily

Probab=98.23  E-value=1.7e-06  Score=74.81  Aligned_cols=54  Identities=22%  Similarity=0.198  Sum_probs=36.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCc--cccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|+|++...  ....+..|.+..... .-+..+.++||||..
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~-~~~~~~~l~Dt~G~~   56 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFE-KGNLSFTAFDMSGQG   56 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEE-ECCEEEEEEECCCCH
Confidence            378999999999999999997532  223445554433211 113457899999975

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.23  E-value=1.4e-06  Score=75.20  Aligned_cols=53  Identities=23%  Similarity=0.208  Sum_probs=36.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC---CcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~---~~i~l~DTpG~i  273 (383)
                      +|+++|+||||||||+|+|+...  .+....+++.+...  ...+   ..+.++||||..
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   59 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE   59 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC--CccccCCcchhhEEEEEEECCEEEEEEEEECCChh
Confidence            69999999999999999999654  23444455544221  1222   247889999964

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.22  E-value=2.8e-06  Score=73.41  Aligned_cols=54  Identities=22%  Similarity=0.376  Sum_probs=36.8

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~  272 (383)
                      ++|+++|.+|+|||||+|+|.+.+. .....+..+.+.  ..+..+.   .+.++||||-
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~   59 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ   59 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence            3799999999999999999997652 333333333332  2333432   4679999995

Rab GTPases are implicated in vesicle trafficking.

>cd01890 LepA LepA subfamily

Probab=98.22  E-value=1.1e-06  Score=77.50  Aligned_cols=56  Identities=29%  Similarity=0.369  Sum_probs=37.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccc--------------cCCCCCceeEEEEEEe--------CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF--------GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~--------------v~~~pgtT~~~~~~~~--------~~~i~l~DTpG~i~  274 (383)
                      +|++||.+|||||||+|+|.+...+.              .....|+|.+.+...+        ...+.++||||...
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   79 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD   79 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence            58999999999999999998643211              1113366665443222        22467999999863

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.22  E-value=4.3e-06  Score=81.96  Aligned_cols=90  Identities=17%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             HHHHHHHHhhhcCeEEEEEecCCCCCCC---c-----HHHHHH---hcCCCeEEEEEccCCCCHHHHHHHHHHHHH-cCC
Q 016762          110 TEKELKDQLKLMDVVIEVRDARIPLSTT---H-----PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAK-QGT  177 (383)
Q Consensus       110 ~~~~l~~~idr~DlILeV~DaR~p~~~~---~-----~~l~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~-~g~  177 (383)
                      +...+.+.++++|++++|+|+.......   +     .++..+   +.++|+++|+||+|+.+......+.+.+.+ .+.
T Consensus       225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~  304 (329)
T TIGR02729       225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGK  304 (329)
T ss_pred             HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCC
Confidence            4455567789999999999987642111   1     112222   136899999999999877665556555543 356


Q ss_pred             eEEEeeCcCCCchhhhhHHHHH
Q 016762          178 KVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       178 ~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .++++|++++.|+++|.+.+.+
T Consensus       305 ~vi~iSAktg~GI~eL~~~I~~  326 (329)
T TIGR02729       305 PVFPISALTGEGLDELLYALAE  326 (329)
T ss_pred             cEEEEEccCCcCHHHHHHHHHH
Confidence            7899999999999988766544

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>CHL00071 tufA elongation factor Tu

Probab=98.22  E-value=1.8e-06  Score=87.13  Aligned_cols=57  Identities=23%  Similarity=0.395  Sum_probs=42.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc---------------ccCCCCCceeEEEEEEe---CCcEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~  272 (383)
                      ..++|+++|.+|+|||||+|+|++....               ..+...|+|.+......   +..+.++||||.
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh   85 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH   85 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence            4578999999999999999999964211               11223799998654443   346899999994

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.22  E-value=3e-06  Score=78.18  Aligned_cols=59  Identities=31%  Similarity=0.562  Sum_probs=47.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-CCcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i~~  275 (383)
                      ...+|+++|+|.||||||+..+++.+ ...+..-|||+.-.  .+.. +.++.++|-||||..
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieG  122 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEG  122 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccc
Confidence            34689999999999999999999654 56788889998843  2333 678999999999964

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.22  E-value=1.7e-06  Score=76.60  Aligned_cols=54  Identities=24%  Similarity=0.333  Sum_probs=35.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC---CcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~i~l~DTpG~i  273 (383)
                      .+|+++|.||||||||+|++++.. . ....+.++.+.  .....+   -.+.++||||.-
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~   60 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGH-F-VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD   60 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC-C-ccccCcchhhhEEEEEEECCEEEEEEEEECCChH
Confidence            369999999999999999999654 2 23233333221  122222   246799999974

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.22  E-value=2e-06  Score=74.00  Aligned_cols=54  Identities=24%  Similarity=0.242  Sum_probs=35.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      .+|+++|.+|||||||+|+|.+...  ......++.+..  .+.++.   .+.++||||--
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   60 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE   60 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence            4799999999999999999997542  233333333321  222332   25689999963

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.21  E-value=1e-05  Score=82.62  Aligned_cols=96  Identities=15%  Similarity=0.167  Sum_probs=67.3

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CC---CcHHHHHHhcCCCeEEEEEccCCCCHHHHHH----HHHHHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-ST---THPLMDQWLGNRKRILVLNREDMISMADRNA----WATYFAK  174 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~-~~---~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~----w~~~l~~  174 (383)
                      -||| +.+.+.+..-+..+|+++.|+|+..+. ..   ....+...++-++.++|+||+|+++.+....    ..+++..
T Consensus       124 tPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~  202 (460)
T PTZ00327        124 CPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKG  202 (460)
T ss_pred             CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHHh
Confidence            3888 567777777788999999999998642 21   1222333344567899999999997554322    2222322


Q ss_pred             ---cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          175 ---QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       175 ---~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                         .+..++++|+.+|.|+..|.+.|.+
T Consensus       203 ~~~~~~~iipVSA~~G~nI~~Ll~~L~~  230 (460)
T PTZ00327        203 TIADNAPIIPISAQLKYNIDVVLEYICT  230 (460)
T ss_pred             hccCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence               2467999999999999999888774

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.21  E-value=1.2e-05  Score=71.06  Aligned_cols=104  Identities=18%  Similarity=0.194  Sum_probs=69.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD  164 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~  164 (383)
                      +.++.++|.        ||+ ..........+..+|.++.|+|+..+......++....  .++|+++|+||+|+...+.
T Consensus        61 ~~~~~liDt--------pG~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~  131 (189)
T cd00881          61 DRRVNFIDT--------PGH-EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEED  131 (189)
T ss_pred             CEEEEEEeC--------CCc-HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhc
Confidence            456777774        333 33445556678899999999999876655444433333  3789999999999987433


Q ss_pred             HHH----HHHHHHH--------------cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          165 RNA----WATYFAK--------------QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       165 ~~~----w~~~l~~--------------~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ...    ..+.++.              ....++++|++.|.|+.++.+.+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~  184 (189)
T cd00881         132 LEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE  184 (189)
T ss_pred             HHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence            222    2222222              2466889999999999888666543

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.21  E-value=4.8e-06  Score=83.30  Aligned_cols=111  Identities=20%  Similarity=0.183  Sum_probs=77.0

Q ss_pred             CCCcEEEEcCC-CCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH-HhcCCCeEEEEEccCCCCHH
Q 016762           86 LDADLYYWTKS-LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WLGNRKRILVLNREDMISMA  163 (383)
Q Consensus        86 ~~~~~vi~~~~-L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~-~l~~k~~ilVlNK~DL~~~~  163 (383)
                      .+.-+.++|.. ++-..  ---.+-..+..++.++.+|+||+|+|+..+....+..+.. ...++|+++|+||+||.++.
T Consensus       263 ~G~pv~l~DTAGiRet~--d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~  340 (454)
T COG0486         263 NGIPVRLVDTAGIRETD--DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKI  340 (454)
T ss_pred             CCEEEEEEecCCcccCc--cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhccccc
Confidence            44555666654 32211  0012334556667899999999999999987777777666 34579999999999999875


Q ss_pred             HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          164 DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       164 ~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      .....   ....+..++.+|+++|.|+..|++.+.++.
T Consensus       341 ~~~~~---~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~  375 (454)
T COG0486         341 ELESE---KLANGDAIISISAKTGEGLDALREAIKQLF  375 (454)
T ss_pred             ccchh---hccCCCceEEEEecCccCHHHHHHHHHHHH
Confidence            43221   112234688999999999999988877664

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.20  E-value=1.6e-05  Score=81.48  Aligned_cols=114  Identities=15%  Similarity=0.096  Sum_probs=72.5

Q ss_pred             CCCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhcCeEEEEEecCCCCCCC------c---HHHHHH-----------
Q 016762           86 LDADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLMDVVIEVRDARIPLSTT------H---PLMDQW-----------  144 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh-~~~~~~~l~~~idr~DlILeV~DaR~p~~~~------~---~~l~~~-----------  144 (383)
                      .+..+++||..--   .-..| .+.+...+.+.++++|+|++|+|+......+      .   .+|..+           
T Consensus       204 ~~~~f~laDtPGl---iegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~  280 (500)
T PRK12296        204 GDTRFTVADVPGL---IPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLG  280 (500)
T ss_pred             CCeEEEEEECCCC---ccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhh
Confidence            4456788885321   00001 1223344556789999999999996432111      1   123332           


Q ss_pred             -hcCCCeEEEEEccCCCCHHHHHHH-HHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          145 -LGNRKRILVLNREDMISMADRNAW-ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       145 -l~~k~~ilVlNK~DL~~~~~~~~w-~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                       +.++|+|+|+||+|+........+ ...+...+..++++|++++.|+.+|...+.++..
T Consensus       281 ~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~  340 (500)
T PRK12296        281 DLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVE  340 (500)
T ss_pred             hhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence             236899999999999765443333 3345556778999999999999998777666543

>PRK09866 hypothetical protein; Provisional

Probab=98.19  E-value=2.2e-05  Score=81.74  Aligned_cols=109  Identities=14%  Similarity=0.065  Sum_probs=73.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C--CCeEEEEEccCCCC-
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N--RKRILVLNREDMIS-  161 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~--k~~ilVlNK~DL~~-  161 (383)
                      ...+++.|...-  + -|++ ..+.+.+.+.++++|+||+|+|+..+.+..+..+.+.+.  +  .|+++|+||+|+.+ 
T Consensus       229 ~~QIIFVDTPGI--h-k~~~-~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr  304 (741)
T PRK09866        229 PGQLTLLDTPGP--N-EAGQ-PHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR  304 (741)
T ss_pred             cCCEEEEECCCC--C-Cccc-hHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc
Confidence            456667774322  1 1221 224555667899999999999998877777766666554  3  49999999999986 


Q ss_pred             ----HHHHHHHHH-HHHHcC---CeEEEeeCcCCCchhhhhHHHHH
Q 016762          162 ----MADRNAWAT-YFAKQG---TKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       162 ----~~~~~~w~~-~l~~~g---~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                          .+....... .+.+.+   ..++++|++.|.|+..|.+.+..
T Consensus       305 eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        305 NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence                333333332 222222   46899999999999998777765

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.19  E-value=2.9e-06  Score=73.92  Aligned_cols=55  Identities=18%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      .+|+++|.+|||||||+|++.+.. ......|..+.+.  ..+.++.   .+.++||||..
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~   62 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE   62 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence            579999999999999999999754 2333344444333  2233332   47899999953

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01864 Rab19 Rab19 subfamily

Probab=98.19  E-value=3.9e-06  Score=73.11  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=35.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeCC---cEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~i~l~DTpG~  272 (383)
                      .+|+++|.+|||||||+|+|.+...... ....|+......+..+.   .+.++||||-
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~   62 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ   62 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence            5799999999999999999986432111 11222222223334433   5689999995

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04113 Rab4 Rab4 subfamily

Probab=98.19  E-value=3.7e-06  Score=72.82  Aligned_cols=53  Identities=25%  Similarity=0.443  Sum_probs=35.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~  272 (383)
                      +|+++|.+|||||||+|+|.+.+. .....+..+.+  ...+.++.   .+.++||||.
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~   59 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVENKF-KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ   59 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEECcch
Confidence            699999999999999999986542 22222333322  22333332   4679999996

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK00089 era GTPase Era; Reviewed

Probab=98.18  E-value=3.8e-05  Score=73.85  Aligned_cols=113  Identities=18%  Similarity=0.139  Sum_probs=76.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchH--HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC-
Q 016762           86 LDADLYYWTKSLRPVQWYPGH--IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-  160 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh--~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~-  160 (383)
                      .+..++++|..   ...-+.+  .+.+.+.....+..+|+|++|+|+..+.......+...+.  +.|.++|+||+|+. 
T Consensus        51 ~~~qi~~iDTP---G~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~  127 (292)
T PRK00089         51 DDAQIIFVDTP---GIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK  127 (292)
T ss_pred             CCceEEEEECC---CCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC
Confidence            34678888853   2222211  1122334456789999999999998866655555555543  57999999999999 


Q ss_pred             CHHHHHHHHHHHHHc--CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          161 SMADRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       161 ~~~~~~~w~~~l~~~--g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      +........+.+.+.  ...++++|+++|.|+.+|.+.+.+..
T Consensus       128 ~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l  170 (292)
T PRK00089        128 DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL  170 (292)
T ss_pred             CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence            555555555555442  25688999999999999887776654

>cd01898 Obg Obg subfamily

Probab=98.17  E-value=6.6e-06  Score=71.71  Aligned_cols=89  Identities=17%  Similarity=0.173  Sum_probs=61.6

Q ss_pred             HHHHHHHhhhcCeEEEEEecCCC-CCCCcH-----HHHHHh---cCCCeEEEEEccCCCCHHHHHHHHHHHHHc--CCeE
Q 016762          111 EKELKDQLKLMDVVIEVRDARIP-LSTTHP-----LMDQWL---GNRKRILVLNREDMISMADRNAWATYFAKQ--GTKV  179 (383)
Q Consensus       111 ~~~l~~~idr~DlILeV~DaR~p-~~~~~~-----~l~~~l---~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~--g~~v  179 (383)
                      ...+.+.++.+|++++|+|+.++ ....+.     ++....   ..+|+++|+||+|+.+......|...+.+.  +..+
T Consensus        69 ~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  148 (170)
T cd01898          69 GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPV  148 (170)
T ss_pred             hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCE
Confidence            34444567889999999999876 222111     122221   258899999999998877666666554443  5678


Q ss_pred             EEeeCcCCCchhhhhHHHHH
Q 016762          180 IFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       180 i~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+|++.+.|+.++.+.+.+
T Consensus       149 ~~~Sa~~~~gi~~l~~~i~~  168 (170)
T cd01898         149 FPISALTGEGLDELLRKLAE  168 (170)
T ss_pred             EEEecCCCCCHHHHHHHHHh
Confidence            89999999999888665543

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.17  E-value=2.3e-06  Score=80.02  Aligned_cols=57  Identities=30%  Similarity=0.465  Sum_probs=49.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccc--cCCCCCceeEEEEEEeCCcEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~~~i~l~DTpG~  272 (383)
                      +.+++++.|.+|||||||||.++..+...  ...++|-|+.++.++++..++++|-||.
T Consensus       135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~  193 (320)
T KOG2486|consen  135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGY  193 (320)
T ss_pred             CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCc
Confidence            45679999999999999999999765432  3448999999999999999999999994

>cd01862 Rab7 Rab7 subfamily

Probab=98.17  E-value=3.3e-06  Score=73.69  Aligned_cols=53  Identities=25%  Similarity=0.402  Sum_probs=34.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~  272 (383)
                      +|+++|.+|||||||+|+|.+.. ......+..+.+.  ..+.++.   .+.++||||.
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~   59 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ   59 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCCh
Confidence            69999999999999999999764 2222222222222  2233332   3568999996

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.17  E-value=3.7e-06  Score=71.66  Aligned_cols=53  Identities=26%  Similarity=0.323  Sum_probs=36.4

Q ss_pred             EeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeC-CcEEEEecCccc
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG-KDLEFLDSPGII  273 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~-~~i~l~DTpG~i  273 (383)
                      |+++|.+|||||||+|+|.+.. ......|.+..+......+ ..+.++||||..
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~   55 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQP   55 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence            7999999999999999999764 2333344433333322222 357899999963

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04118 Rab24 Rab24 subfamily

Probab=98.16  E-value=4e-06  Score=75.12  Aligned_cols=55  Identities=29%  Similarity=0.454  Sum_probs=36.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCcee---EEEEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~---~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||+|++++.. ...+....|+.   ....+.++.   .+.++||||--
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~   61 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE   61 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence            369999999999999999999754 33333333332   223344433   25589999974

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.16  E-value=3.8e-06  Score=72.62  Aligned_cols=53  Identities=26%  Similarity=0.315  Sum_probs=35.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC-----CcEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-----KDLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~-----~~i~l~DTpG~  272 (383)
                      +|+++|.+|||||||+|++++.. ......|..+.+..  .+.+.     -.+.++||||-
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   61 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ   61 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence            69999999999999999999754 22222333333432  22222     24789999995

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04136 Rap_like Rap-like subfamily

Probab=98.16  E-value=2.5e-06  Score=73.73  Aligned_cols=54  Identities=22%  Similarity=0.229  Sum_probs=36.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      .+|+++|.+|||||||+|++.+..  .+...+.|+.+.  ..+.++.   .+.+.||||.-
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTE   60 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence            479999999999999999998654  233334444332  2233332   35679999974

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.16  E-value=2.4e-06  Score=81.42  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=39.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCc-----ccc------------CCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRM-----CPA------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~-----~~v------------~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      +|+++|.+|+|||||+|+|.....     ..+            ....|+|.+.....+   +..+.++||||...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence            389999999999999999963211     011            124578877544333   45788999999753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01865 Rab3 Rab3 subfamily

Probab=98.16  E-value=5.3e-06  Score=72.44  Aligned_cols=55  Identities=25%  Similarity=0.251  Sum_probs=36.1

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCce--eEEEEEEeC---CcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT--~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      .+|+++|.+|||||||+|+|.+.+. .....|.++  -....+..+   -.+.+.||||.-
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~   61 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE   61 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence            4799999999999999999997652 222223222  222222222   247899999964

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.15  E-value=2.2e-06  Score=72.83  Aligned_cols=44  Identities=23%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~  272 (383)
                      +|+++|.+|||||||+|+|++...   ..  ..|....+   ..  .++||||.
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~---~~--~~t~~~~~---~~--~~iDt~G~   45 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI---LY--KKTQAVEY---ND--GAIDTPGE   45 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc---cc--ccceeEEE---cC--eeecCchh
Confidence            689999999999999999997653   11  12322222   22  68999997

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04109 Rab28 Rab28 subfamily

Probab=98.15  E-value=4e-06  Score=76.94  Aligned_cols=53  Identities=23%  Similarity=0.225  Sum_probs=38.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC----CcEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG----KDLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~----~~i~l~DTpG~  272 (383)
                      +|++||++|||||||+|+|.+.. ......|.++.+...  +.++    -.+.+.||||-
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~   60 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ   60 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence            69999999999999999999654 334445666556432  3332    24679999995

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04151 Arl1 Arl1 subfamily

Probab=98.14  E-value=3.7e-06  Score=72.80  Aligned_cols=53  Identities=25%  Similarity=0.409  Sum_probs=34.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|+|.........+..|.+  ...+.. +..+.++||||..
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~   54 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFN--VETVTYKNLKFQVWDLGGQT   54 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcC--eEEEEECCEEEEEEECCCCH
Confidence            4899999999999999999765433222222222  212222 3467899999974

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04175 Rap1 Rap1 subgroup

Probab=98.14  E-value=3.4e-06  Score=73.31  Aligned_cols=54  Identities=22%  Similarity=0.190  Sum_probs=37.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      .+|+++|.+|||||||+|++....  .....+.|+.+..  .+.++.   .+.+.||||.-
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE   60 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence            479999999999999999998543  3344445554432  223332   35689999974

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04142 RRP22 RRP22 subfamily

Probab=98.13  E-value=4.2e-06  Score=76.00  Aligned_cols=54  Identities=31%  Similarity=0.552  Sum_probs=37.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|++.+.. ......|.++.+..  .+..+.   .+.++||||.-
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~~~-f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~   60 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQE-FPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ   60 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHcCC-CCcccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence            69999999999999999999754 22233455544432  233333   36699999975

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PRK13768 GTPase; Provisional

Probab=98.13  E-value=1.5e-05  Score=75.23  Aligned_cols=117  Identities=20%  Similarity=0.182  Sum_probs=73.8

Q ss_pred             ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhh--cCeEEEEEecCCCCCCCcHHHHHH-------hcCCCeEE
Q 016762           82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL--MDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRIL  152 (383)
Q Consensus        82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr--~DlILeV~DaR~p~~~~~~~l~~~-------l~~k~~il  152 (383)
                      ..+..+.|+++||..   .|.-+-.++...+.+.+.+.+  .++|++|+|++......+.....+       ..++|.++
T Consensus        91 ~l~~~~~~~~~~d~~---g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~  167 (253)
T PRK13768         91 EIESLDADYVLVDTP---GQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIP  167 (253)
T ss_pred             HHHhcCCCEEEEeCC---cHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            345566799999953   221111112334444445555  899999999987555444333322       24789999


Q ss_pred             EEEccCCCCHHHHHHHHHHH----------------------------HHcC--CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          153 VLNREDMISMADRNAWATYF----------------------------AKQG--TKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       153 VlNK~DL~~~~~~~~w~~~l----------------------------~~~g--~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      |+||+|+.+..+.....+++                            ++.+  ..++++|++++.|+++|.+.+.+..
T Consensus       168 v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        168 VLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             EEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            99999999776543322222                            2223  4678899999999998887776653

>cd01893 Miro1 Miro1 subfamily

Probab=98.13  E-value=3.3e-06  Score=73.91  Aligned_cols=53  Identities=26%  Similarity=0.249  Sum_probs=35.0

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCc----eeEEEEEEeCCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV----TRVLKWVRFGKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgt----T~~~~~~~~~~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|+|.+...  .+..|.+    |.........-.+.++||||.-
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   58 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEF--PENVPRVLPEITIPADVTPERVPTTIVDTSSRP   58 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcC--CccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence            699999999999999999987542  2223332    2222111112357899999974

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04149 Arf6 Arf6 subfamily

Probab=98.12  E-value=5e-06  Score=73.21  Aligned_cols=55  Identities=18%  Similarity=0.267  Sum_probs=38.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      .++|.++|.+|||||||+|+|......  ...|.++.+...+.. ...+.+.||||.-
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~   64 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNVETVTYKNVKFNVWDVGGQD   64 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccceEEEEECCEEEEEEECCCCH
Confidence            468999999999999999999854422  233433333333333 3458899999984

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00879 Sar1 Sar1 subfamily

Probab=98.12  E-value=5.1e-06  Score=74.19  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=37.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..+|+++|.+|||||||+|+|.+.......+..+.+.  ..+.. +..+.++||||-.
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~   74 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE   74 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCH
Confidence            4579999999999999999999765322222222221  22223 3467899999953

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.12  E-value=1.1e-05  Score=79.23  Aligned_cols=111  Identities=17%  Similarity=0.152  Sum_probs=70.2

Q ss_pred             CCcEEEEcCCCC--CcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHH---hcCCCeEEEEEc
Q 016762           87 DADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQW---LGNRKRILVLNR  156 (383)
Q Consensus        87 ~~~~vi~~~~L~--~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~---l~~k~~ilVlNK  156 (383)
                      +..+++||..--  ...+    ...+...+.+.+++++++++|+|+..+.+..+.     ++..+   +.++|+++|+||
T Consensus       205 ~~~~~i~D~PGli~ga~~----~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NK  280 (335)
T PRK12299        205 YKSFVIADIPGLIEGASE----GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNK  280 (335)
T ss_pred             CcEEEEEeCCCccCCCCc----cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEEC
Confidence            345788875311  1110    123445666789999999999999865422111     12222   126899999999


Q ss_pred             cCCCCHHHHH-H-HHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          157 EDMISMADRN-A-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       157 ~DL~~~~~~~-~-w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      +|+.+..... . ...++...+..++++|++++.|+++|.+.+.++.
T Consensus       281 iDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l  327 (335)
T PRK12299        281 IDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELL  327 (335)
T ss_pred             cccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            9998654322 1 2222334457889999999999999877766543

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.12  E-value=5.6e-06  Score=71.82  Aligned_cols=53  Identities=19%  Similarity=0.231  Sum_probs=35.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|++.+...  ......++.+..  ...++.   .+.++||||.-
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~   59 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQE   59 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence            699999999999999999997542  233333443322  222322   46689999974

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04123 Rab21 Rab21 subfamily

Probab=98.11  E-value=5.1e-06  Score=71.45  Aligned_cols=54  Identities=24%  Similarity=0.363  Sum_probs=35.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|+|.+... .....+.++.+..  .+....   .+.++||||-.
T Consensus         2 ki~i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   60 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVENKF-NEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE   60 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC-CCCcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence            699999999999999999997543 2222233323322  222222   47799999953

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01878 HflX HflX subfamily

Probab=98.11  E-value=4.9e-05  Score=68.79  Aligned_cols=106  Identities=16%  Similarity=0.194  Sum_probs=67.4

Q ss_pred             cEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HHHHHh-----cCCCeEEEEEccCCCCH
Q 016762           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISM  162 (383)
Q Consensus        89 ~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~l~~~l-----~~k~~ilVlNK~DL~~~  162 (383)
                      .+.+||..-.- ..++.++..........+..+|++++|+|++.+....+. .+..++     .++|+++|+||+|+.+.
T Consensus        90 ~~~i~Dt~G~~-~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~  168 (204)
T cd01878          90 EVLLTDTVGFI-RDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD  168 (204)
T ss_pred             eEEEeCCCccc-cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence            56777753321 122322322223333456789999999999987655432 122222     25799999999999876


Q ss_pred             HHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       163 ~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ....   ..+...+..++++|+++|.|+.++.+.+.
T Consensus       169 ~~~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~  201 (204)
T cd01878         169 EELE---ERLEAGRPDAVFISAKTGEGLDELLEAIE  201 (204)
T ss_pred             HHHH---HHhhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence            5443   22334456789999999999988866543

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd00876 Ras Ras family

Probab=98.11  E-value=3.5e-06  Score=72.32  Aligned_cols=54  Identities=19%  Similarity=0.203  Sum_probs=38.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC---CcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~---~~i~l~DTpG~i~  274 (383)
                      +|+++|.+|||||||+|+|++..  ..+....+|.+...  +..+   -.+.++||||...
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   59 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE   59 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence            48999999999999999999765  44555555554332  2333   2467899999753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04124 RabL2 RabL2 subfamily

Probab=98.11  E-value=1.3e-05  Score=69.86  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=67.6

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---hcCCCeEEEEEccCC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---LGNRKRILVLNREDM  159 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l~~k~~ilVlNK~DL  159 (383)
                      ....++-+||..        |+ .+........++.+|+++.|+|...+.+..+..  +..+   ..+.|+++|+||+|+
T Consensus        46 ~~~~~~~i~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl  116 (161)
T cd04124          46 GKTILVDFWDTA--------GQ-ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL  116 (161)
T ss_pred             CEEEEEEEEeCC--------Cc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccC
Confidence            344566778743        22 344445557789999999999987665433221  1111   126899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       160 ~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      .+.. .....+...+.+..++.+|+++|.|+.++.+.+.
T Consensus       117 ~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (161)
T cd04124         117 DPSV-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI  154 (161)
T ss_pred             chhH-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            6432 2223333334467788999999999988865544

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.09  E-value=4.9e-06  Score=87.40  Aligned_cols=58  Identities=26%  Similarity=0.399  Sum_probs=45.6

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CC-cEEEEecCccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGII  273 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~-~i~l~DTpG~i  273 (383)
                      .++++|+++|.+|+|||||+|+|.+.+ +..+..+|+|.+.....+   +. .+.++||||.-
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe  146 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE  146 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence            456789999999999999999999764 445566889988654333   33 79999999964

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd00880 Era_like Era (E

Probab=98.09  E-value=5.1e-05  Score=64.03  Aligned_cols=111  Identities=16%  Similarity=0.116  Sum_probs=74.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH--hcCCCeEEEEEccCCCCHHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMAD  164 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~--l~~k~~ilVlNK~DL~~~~~  164 (383)
                      ..++.+||..-..  .+..............+..+|++++|+|+..+.......+...  ..+.|.++|+||+|+.....
T Consensus        44 ~~~~~~~Dt~g~~--~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  121 (163)
T cd00880          44 LGPVVLIDTPGID--EAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEE  121 (163)
T ss_pred             CCcEEEEECCCCC--ccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhh
Confidence            5678888854321  1111112223455577899999999999998776665542222  24789999999999998876


Q ss_pred             HHHHHH---H--HHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          165 RNAWAT---Y--FAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       165 ~~~w~~---~--l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ...+..   .  ....+..++++|++++.|+.++.+.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~  161 (163)
T cd00880         122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIE  161 (163)
T ss_pred             HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHh
Confidence            666532   1  1123467888999999999888766543

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK12735 elongation factor Tu; Reviewed

Probab=98.09  E-value=5.7e-06  Score=83.18  Aligned_cols=58  Identities=22%  Similarity=0.361  Sum_probs=42.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC------Cccc---------cCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~------~~~~---------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|+|||||+|+|++.      ....         .....|+|.+......   +..+.++||||.-
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence            4578999999999999999999852      1111         1125789998765554   3468999999973

>cd04140 ARHI_like ARHI subfamily

Probab=98.09  E-value=5.1e-06  Score=72.56  Aligned_cols=55  Identities=25%  Similarity=0.288  Sum_probs=34.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccc--cCCCCCceeEEEEEEeC---CcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i~  274 (383)
                      .+|+++|.+|||||||+|++++.....  ....+.+++.  ....+   ..+.++||||.-.
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~   61 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ--VISCSKNICTLQITDTTGSHQ   61 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEE--EEEECCEEEEEEEEECCCCCc
Confidence            479999999999999999999754211  1111112211  11222   2467999999853

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04177 RSR1 RSR1 subgroup

Probab=98.09  E-value=6.8e-06  Score=71.95  Aligned_cols=54  Identities=26%  Similarity=0.310  Sum_probs=35.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC---CcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~i~l~DTpG~i  273 (383)
                      .+|+++|.||||||||+|++.+...  ......++.+.  ..+.++   ..+.++||||.-
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   60 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE   60 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcc
Confidence            4799999999999999999986542  22223333222  222333   256799999964

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.08  E-value=5.7e-06  Score=72.67  Aligned_cols=52  Identities=27%  Similarity=0.298  Sum_probs=37.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~  272 (383)
                      +|+++|.+|||||||+|+|++.......+..|.+..  .+.. +..+.++||||-
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~   53 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGG   53 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCc
Confidence            378999999999999999997633334455555432  2233 346889999995

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.08  E-value=7.6e-06  Score=73.04  Aligned_cols=54  Identities=19%  Similarity=0.314  Sum_probs=36.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe------CCcEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~------~~~i~l~DTpG~  272 (383)
                      .++|+++|.+|||||||+|++.....  +...|.++.+...+.+      +-.+.++||||.
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~   62 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ   62 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCCCceEEEEEECCCc
Confidence            46899999999999999999986543  2333332222222222      235789999996

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.08  E-value=2.4e-05  Score=82.34  Aligned_cols=99  Identities=19%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH----HHHHHHHHc-
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN----AWATYFAKQ-  175 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~----~w~~~l~~~-  175 (383)
                      ||| .++.+.+...+..+|+++.|+|+..+......+...++  .+.| .++|+||+|+++.+...    ...+.+... 
T Consensus        58 PGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~  136 (581)
T TIGR00475        58 PGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI  136 (581)
T ss_pred             CCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            777 56677777778999999999999875432222211122  2556 99999999999865332    222223332 


Q ss_pred             ---CCeEEEeeCcCCCchhhhhHHHHHhhhh
Q 016762          176 ---GTKVIFSNGQLGMGTMKLSRLAKALASD  203 (383)
Q Consensus       176 ---g~~vi~iSa~~g~Gi~~L~~~l~~l~~~  203 (383)
                         +..++++|+++|.|+.++.+.+.++...
T Consensus       137 ~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       137 FLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence               3578999999999999988777665543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.08  E-value=1.9e-05  Score=67.38  Aligned_cols=82  Identities=20%  Similarity=0.240  Sum_probs=63.2

Q ss_pred             HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh
Q 016762          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK  192 (383)
Q Consensus       113 ~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~  192 (383)
                      .....+.++|+++.|+|+..+.+..+.++.....++|+++|+||+|+.+....     .....+..++.+|++++.|+.+
T Consensus        73 ~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~  147 (157)
T cd04164          73 RAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDE  147 (157)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHH
Confidence            34456789999999999998777776665555568999999999999876543     1223356789999999999998


Q ss_pred             hhHHHHH
Q 016762          193 LSRLAKA  199 (383)
Q Consensus       193 L~~~l~~  199 (383)
                      |.+.+.+
T Consensus       148 l~~~l~~  154 (157)
T cd04164         148 LKEALLE  154 (157)
T ss_pred             HHHHHHH
Confidence            8776554

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd04112 Rab26 Rab26 subfamily

Probab=98.08  E-value=7.1e-06  Score=73.69  Aligned_cols=53  Identities=23%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCC-CceeEE--EEEEeCC---cEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL--KWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-gtT~~~--~~~~~~~---~i~l~DTpG~  272 (383)
                      +|+++|.+|||||||+|++.+.. ...+..+ .++.+.  ..+.++.   .+.++||||-
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~   60 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGA-FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ   60 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence            69999999999999999998754 2233322 222232  2233332   4678999994

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00157 Rho Rho (Ras homology) family

Probab=98.08  E-value=8.3e-06  Score=71.06  Aligned_cols=56  Identities=23%  Similarity=0.290  Sum_probs=35.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE-EEEEEe---CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~-~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      ++|+++|.+|||||||+|+|++.+. .....|..... ......   ...+.++||||...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~   60 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE   60 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence            4799999999999999999997653 22222222111 111122   12478999999863

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.07  E-value=6.8e-06  Score=81.18  Aligned_cols=61  Identities=23%  Similarity=0.226  Sum_probs=38.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC-----CccccCCCCCceeEEEEEEeC--CcEEEEecCccccCCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGIIPMRI  277 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~-----~~~~v~~~pgtT~~~~~~~~~--~~i~l~DTpG~i~~~~  277 (383)
                      .+++|||+|-+|+|||||||+|.|-     ..+.+|-. -||.....+...  .++.|.|.||+=.+.+
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f  101 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDLPGIGTPNF  101 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence            3678999999999999999999862     22233332 466666655543  5899999999965543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK15494 era GTPase Era; Provisional

Probab=98.07  E-value=4.9e-05  Score=74.88  Aligned_cols=114  Identities=14%  Similarity=0.055  Sum_probs=72.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD  164 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~  164 (383)
                      +..+++||....... +..-.....+.....+..+|+|++|+|+..........+...+.  +.|.++|+||+|+.+.. 
T Consensus        99 ~~qi~~~DTpG~~~~-~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~-  176 (339)
T PRK15494         99 DTQVILYDTPGIFEP-KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY-  176 (339)
T ss_pred             CeEEEEEECCCcCCC-cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc-
Confidence            456788886432100 00001223344445689999999999988765554444443332  56889999999997542 


Q ss_pred             HHHHHHHHHHcC--CeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          165 RNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       165 ~~~w~~~l~~~g--~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                      .....+++...+  ..++++|+++|.|+.+|.+.+.+...
T Consensus       177 ~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        177 LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence            333334444433  46889999999999998777766543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.06  E-value=3e-05  Score=82.04  Aligned_cols=98  Identities=16%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCC-eEEEEEccCCCCHHHHH----HHHHHHHHcC
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN----AWATYFAKQG  176 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~~----~w~~~l~~~g  176 (383)
                      ||| +++.+.+...+..+|+++.|+|+..+......+...++.  +.+ .++|+||+|+++.+...    .+.+.+...+
T Consensus        59 PGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~  137 (614)
T PRK10512         59 PGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYG  137 (614)
T ss_pred             CCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcC
Confidence            788 566777777789999999999998765544333333322  445 57999999998754332    3333444434


Q ss_pred             ---CeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          177 ---TKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       177 ---~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                         ..++++|+++|.|+..|.+.+.++..
T Consensus       138 ~~~~~ii~VSA~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        138 FAEAKLFVTAATEGRGIDALREHLLQLPE  166 (614)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence               46899999999999999888876643

>cd04125 RabA_like RabA-like subfamily

Probab=98.05  E-value=9.6e-06  Score=72.50  Aligned_cols=55  Identities=29%  Similarity=0.381  Sum_probs=36.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|++.+..... ..+..|.+.....+.++.   .+.++||||.-
T Consensus         2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~   60 (188)
T cd04125           2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE   60 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence            69999999999999999999764221 223333333333444433   35789999963

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.04  E-value=3.5e-05  Score=77.75  Aligned_cols=104  Identities=15%  Similarity=0.190  Sum_probs=68.9

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CCCc-HHHH--HHhcCCCeEEEEEccCCCCHH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTH-PLMD--QWLGNRKRILVLNREDMISMA  163 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~-~~~~-~~l~--~~l~~k~~ilVlNK~DL~~~~  163 (383)
                      ..+.++|.        ||| +++.+.+...+..+|++++|+|++.+. .... ..+.  ..+..++.++++||+|+.+.+
T Consensus        80 ~~i~liDt--------PGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~  150 (406)
T TIGR03680        80 RRVSFVDA--------PGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE  150 (406)
T ss_pred             cEEEEEEC--------CCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHH
Confidence            34556663        777 556677777778899999999999764 2221 1222  222346789999999998754


Q ss_pred             HHHH----HHHHHHHc---CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          164 DRNA----WATYFAKQ---GTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       164 ~~~~----w~~~l~~~---g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ....    ..+.+...   +..++++|+++|.|+..|.+.+...
T Consensus       151 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~  194 (406)
T TIGR03680       151 KALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF  194 (406)
T ss_pred             HHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence            3221    11222221   4568899999999999988877664

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.03  E-value=2e-05  Score=71.02  Aligned_cols=99  Identities=21%  Similarity=0.254  Sum_probs=64.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH-Hh-cCCCeEEEEEccCCCCHH-
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISMA-  163 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~~-  163 (383)
                      +..+.+||.        ||| .++.......+..+|.++.|+|+..........+.. .. .+.|.++|+||+|+.... 
T Consensus        64 ~~~~~l~Dt--------pG~-~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~  134 (194)
T cd01891          64 DTKINIVDT--------PGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARP  134 (194)
T ss_pred             CEEEEEEEC--------CCc-HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH
Confidence            455667774        444 456666777899999999999998643222222222 11 368999999999996432 


Q ss_pred             --HHHHHHHHHHH-------cCCeEEEeeCcCCCchhhhh
Q 016762          164 --DRNAWATYFAK-------QGTKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       164 --~~~~w~~~l~~-------~g~~vi~iSa~~g~Gi~~L~  194 (383)
                        ....+.+.+..       .+..++++|+++|.|+.+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~  174 (194)
T cd01891         135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLE  174 (194)
T ss_pred             HHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccc
Confidence              23444444432       24678899999999886653

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>COG2262 HflX GTPases [General function prediction only]

Probab=98.03  E-value=3.5e-05  Score=75.94  Aligned_cols=124  Identities=20%  Similarity=0.223  Sum_probs=81.7

Q ss_pred             EEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-----cCCCeEEEEEccCCCCHHHH
Q 016762           92 YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-----GNRKRILVLNREDMISMADR  165 (383)
Q Consensus        92 i~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l-----~~k~~ilVlNK~DL~~~~~~  165 (383)
                      +..+-..-++-.|-+.-.+-+.+.+-+..+|++|.|+|+.+|....+.+ ....+     ..+|.|+|+||+|+++....
T Consensus       243 lLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~  322 (411)
T COG2262         243 LLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI  322 (411)
T ss_pred             EEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh
Confidence            3334444455566667777777777789999999999999984433322 11222     26899999999999876652


Q ss_pred             HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCC
Q 016762          166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVG  229 (383)
Q Consensus       166 ~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvG  229 (383)
                      ..   .+.......+++|+++|.|++.|++.+.+......           ...-..+.+.+.|
T Consensus       323 ~~---~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~-----------~~~~l~lp~~~~~  372 (411)
T COG2262         323 LA---ELERGSPNPVFISAKTGEGLDLLRERIIELLSGLR-----------TEVTLELPYTDAG  372 (411)
T ss_pred             hh---hhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhcc-----------cceEEEcCccccc
Confidence            21   12222225889999999999999888766543211           1123456777777

>cd04122 Rab14 Rab14 subfamily

Probab=98.03  E-value=1.4e-05  Score=69.81  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=36.2

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCce---eEEEEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT---RVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT---~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      .+|.++|.+|||||||+|++.+...  ....+.++   .....+.++.   .+.+.||||--
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   62 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE   62 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence            5799999999999999999996542  23333332   2222334432   46899999963

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04158 ARD1 ARD1 subfamily

Probab=98.02  E-value=9.8e-06  Score=71.20  Aligned_cols=51  Identities=20%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i  273 (383)
                      +|.++|.+|||||||+|+|.+..  ...  +..|.....  +.. +..+.++||||..
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~   54 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDE--FMQ--PIPTIGFNVETVEYKNLKFTIWDVGGKH   54 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCC--CCC--cCCcCceeEEEEEECCEEEEEEECCCCh
Confidence            48899999999999999999753  122  334443322  222 3367899999974

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04135 Tc10 TC10 subfamily

Probab=98.02  E-value=1.3e-05  Score=70.31  Aligned_cols=54  Identities=20%  Similarity=0.183  Sum_probs=35.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||+|++.+...  ......++.+..  .+.++.   .+.++||||--
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   59 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE   59 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence            3699999999999999999986542  222223333321  233333   25689999964

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.01  E-value=9.7e-05  Score=64.05  Aligned_cols=106  Identities=17%  Similarity=0.110  Sum_probs=66.0

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD  164 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~  164 (383)
                      +.++.+||.        ||| ..+.......+..+|+++.|+|+..+...........+  .++|.++|+||+|+.....
T Consensus        49 ~~~~~iiDt--------pG~-~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~  119 (168)
T cd01887          49 IPGITFIDT--------PGH-EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP  119 (168)
T ss_pred             cceEEEEeC--------CCc-HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH
Confidence            567788884        333 23333334567899999999999865432222222222  3789999999999974321


Q ss_pred             --HHHHHHHHHH-------cCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          165 --RNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       165 --~~~w~~~l~~-------~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                        .......+..       ....++.+|++.|.|+.+|.+.+.++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         120 ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence              1111111111       124688999999999999877766543

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04114 Rab30 Rab30 subfamily

Probab=98.01  E-value=1.2e-05  Score=70.09  Aligned_cols=56  Identities=20%  Similarity=0.315  Sum_probs=36.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ..+|+++|.+|||||||+|+|++.. ......+..+.+..  .+.+..   .+.+.||||.-
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~   67 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE   67 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence            3689999999999999999998643 22233333333332  223322   36788999963

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04110 Rab35 Rab35 subfamily

Probab=98.01  E-value=1.4e-05  Score=72.35  Aligned_cols=57  Identities=26%  Similarity=0.339  Sum_probs=36.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|++.+.... ...+..|.......+.++.   .+.|+||||--
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~   66 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE   66 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence            468999999999999999999975421 1122222222222333332   46799999953

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.00  E-value=2.5e-05  Score=67.64  Aligned_cols=104  Identities=14%  Similarity=0.118  Sum_probs=66.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh---cCCCeEEEEEccCCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL---GNRKRILVLNREDMI  160 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l---~~k~~ilVlNK~DL~  160 (383)
                      ...++.+||..        |+ ..........++++|++++|+|..++.+..+.  -++.+.   .+.|.++|.||+|+.
T Consensus        50 ~~~~l~i~Dt~--------G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  120 (164)
T cd04101          50 NTVELFIFDSA--------GQ-ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA  120 (164)
T ss_pred             CEEEEEEEECC--------CH-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence            34667888842        32 44445556778999999999998765433211  111111   257999999999997


Q ss_pred             CHHHHH--HHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          161 SMADRN--AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       161 ~~~~~~--~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +..+..  ....+....+..++.+|+++|.|+.++.+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (164)
T cd04101         121 DKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA  160 (164)
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence            553221  11222233466788999999999988866554

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04116 Rab9 Rab9 subfamily

Probab=98.00  E-value=1.3e-05  Score=70.14  Aligned_cols=56  Identities=23%  Similarity=0.306  Sum_probs=36.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~  272 (383)
                      ..++|+++|.+|||||||+|++.+.. ......+..+.+.  ..+.++.   .+.+.||||-
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ   64 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh
Confidence            34789999999999999999998654 2222222222222  2223322   3678899995

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.00  E-value=1.3e-05  Score=69.50  Aligned_cols=55  Identities=25%  Similarity=0.295  Sum_probs=35.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCce-eEE--EEEEe--C--CcEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVL--KWVRF--G--KDLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT-~~~--~~~~~--~--~~i~l~DTpG~  272 (383)
                      ++|+++|.+|||||||+|+|.............++ -+.  ....+  +  -.+.++||||.
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~   62 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ   62 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH
Confidence            36999999999999999999854222233333333 122  12222  1  25789999995

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.00  E-value=8.2e-06  Score=88.06  Aligned_cols=59  Identities=31%  Similarity=0.508  Sum_probs=46.7

Q ss_pred             CCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       214 ~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ..+++.|+++|++|+|||||+|+|++.+ +..+..+|+|.+...+.+   +..+.++||||.-
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe  348 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHE  348 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence            3467889999999999999999998754 455667889988754443   4578999999974

>cd04124 RabL2 RabL2 subfamily

Probab=97.99  E-value=1.4e-05  Score=69.52  Aligned_cols=56  Identities=29%  Similarity=0.387  Sum_probs=34.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeC-C--cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG-K--DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~-~--~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||+|++.+...... .+..+.+.......++ .  .+.+.||||.-
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   60 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence            3699999999999999999986532111 1111222222222233 2  46789999964

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=97.98  E-value=2.1e-05  Score=67.44  Aligned_cols=80  Identities=19%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHHH-HHh-cCCCeEEEEEccCCCCHHHHHHHHHHHH-HcCCeEEEeeCcCCCchhhhhH
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GNRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l~-~~l-~~k~~ilVlNK~DL~~~~~~~~w~~~l~-~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +.+|++++|+|+..+...  ..+. .+. .++|+++|+||+|+.+......+.+.+. ..+..++++|+..|.|+.++.+
T Consensus        73 ~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~  150 (158)
T cd01879          73 EKPDLIVNVVDATNLERN--LYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             CCCcEEEEEeeCCcchhH--HHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence            599999999999875332  2222 222 3789999999999986543333333332 3467899999999999988876


Q ss_pred             HHHHh
Q 016762          196 LAKAL  200 (383)
Q Consensus       196 ~l~~l  200 (383)
                      .+..+
T Consensus       151 ~l~~~  155 (158)
T cd01879         151 AIAEL  155 (158)
T ss_pred             HHHHH
Confidence            66544

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.98  E-value=1.2e-05  Score=75.17  Aligned_cols=56  Identities=23%  Similarity=0.399  Sum_probs=36.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccc-----cC------------CCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCP-----AA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~-----v~------------~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      +|+++|.+|+|||||+|+|+......     +.            ..-|+|.+.....+   +.++.++||||...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~   76 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD   76 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence            38999999999999999998542211     11            11233433332222   45789999999963

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.98  E-value=1.2e-05  Score=86.43  Aligned_cols=57  Identities=21%  Similarity=0.315  Sum_probs=40.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcc-----ccCC------------CCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMC-----PAAP------------RPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v~~------------~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      .+|+|+|.+|+|||||+|+|......     .+.+            ..|+|.+.....+   +..+.++||||...
T Consensus        11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484        11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            37999999999999999999743211     1111            3578877543332   55789999999974

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04176 Rap2 Rap2 subgroup

Probab=97.98  E-value=1.7e-05  Score=68.75  Aligned_cols=54  Identities=22%  Similarity=0.285  Sum_probs=35.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      .+|+++|.||||||||+|++.....  ......++.+.  ..+.++.   .+.++||||.-
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE   60 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence            4799999999999999999986532  22222232222  2233322   36789999963

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PRK00007 elongation factor G; Reviewed

Probab=97.98  E-value=9.6e-06  Score=87.20  Aligned_cols=57  Identities=19%  Similarity=0.291  Sum_probs=41.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCc-----cccC------------CCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~------------~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      .+|+|+|.+|+|||||+|+|.....     -.+.            ...|+|.+.....+   +..+.|+||||+..
T Consensus        11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007         11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            4799999999999999999963111     0122            25688888543332   56799999999864

>PTZ00099 rab6; Provisional

Probab=97.97  E-value=4.2e-05  Score=68.17  Aligned_cols=108  Identities=15%  Similarity=0.101  Sum_probs=68.8

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEc
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNR  156 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK  156 (383)
                      +....+.+.+||..        |+ .+........++.+|++|+|||...+.+..+.  .+..+.    ...|+++|.||
T Consensus        24 ~~~~~v~l~iwDt~--------G~-e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK   94 (176)
T PTZ00099         24 LDEGPVRLQLWDTA--------GQ-ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK   94 (176)
T ss_pred             ECCEEEEEEEEECC--------Ch-HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence            34456788899852        22 45555556778999999999998765443222  222222    14578999999


Q ss_pred             cCCCCHH--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          157 EDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       157 ~DL~~~~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +||....  ............+..++.+|+++|.|+.++.+.+.+
T Consensus        95 ~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~  139 (176)
T PTZ00099         95 TDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAA  139 (176)
T ss_pred             cccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            9996421  111222223344566778999999999888655443

>cd04144 Ras2 Ras2 subfamily

Probab=97.97  E-value=1.3e-05  Score=71.96  Aligned_cols=53  Identities=25%  Similarity=0.208  Sum_probs=34.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC-C--cEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-~--~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|+|....  .....+.++.+.  ..+.++ .  .+.++||||.-
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   58 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNH--FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE   58 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC--CCccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence            48999999999999999998543  223334444322  122232 2  36789999963

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=97.96  E-value=1.3e-05  Score=69.20  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||.        ||+ .+........+..+|++++|+|+.++.+..  ...+...+     .+.|+++|+||+|+
T Consensus        43 ~~~l~i~D~--------~G~-~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  113 (160)
T cd04156          43 HLSLTVWDV--------GGQ-EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL  113 (160)
T ss_pred             ceEEEEEEC--------CCC-HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccc
Confidence            356778884        222 344444556789999999999998764222  22233332     36799999999999


Q ss_pred             CCHHHHHHHHHHHH------HcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADRNAWATYFA------KQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~~~w~~~l~------~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ............+.      ..+..++.+|+++|.|+.++.+.+
T Consensus       114 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i  157 (160)
T cd04156         114 PGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL  157 (160)
T ss_pred             ccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHH
Confidence            64221122222211      112357789999999998886554

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=97.96  E-value=3.6e-05  Score=66.58  Aligned_cols=102  Identities=12%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||..        |+ .++.......+..+|++++|+|+.++.+..  ...+..++     .++|+++|+||+|+
T Consensus        42 ~~~~~i~Dt~--------G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl  112 (158)
T cd04151          42 NLKFQVWDLG--------GQ-TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDM  112 (158)
T ss_pred             CEEEEEEECC--------CC-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCC
Confidence            4556677743        32 333344446789999999999987653211  12232222     26899999999999


Q ss_pred             CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .......+....+.     ..+..++++|+++|.|+.++.+.+
T Consensus       113 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  155 (158)
T cd04151         113 PGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL  155 (158)
T ss_pred             CCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence            74322222222221     112468999999999998886554

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=97.95  E-value=1.1e-05  Score=84.99  Aligned_cols=54  Identities=28%  Similarity=0.416  Sum_probs=41.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC--ccccCCCCCceeEEEEEEe---CCcEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~  272 (383)
                      .|+++|++|+|||||+|+|++..  .......+|+|.+.....+   +..+.++||||.
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh   60 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH   60 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence            58999999999999999999753  1223446799988754333   346789999995

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=97.95  E-value=6.1e-05  Score=77.00  Aligned_cols=82  Identities=27%  Similarity=0.359  Sum_probs=59.9

Q ss_pred             HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh
Q 016762          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK  192 (383)
Q Consensus       113 ~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~  192 (383)
                      ...+.+..+|++++|+|+..+.+..+.++.....++|+++|+||+|+.+.....      ...+..++++|+++|.|+++
T Consensus       287 ~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~  360 (449)
T PRK05291        287 RSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDE  360 (449)
T ss_pred             HHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHH
Confidence            345678999999999999887665443332223578999999999998654322      22345688999999999998


Q ss_pred             hhHHHHHh
Q 016762          193 LSRLAKAL  200 (383)
Q Consensus       193 L~~~l~~l  200 (383)
                      |.+.+.+.
T Consensus       361 L~~~L~~~  368 (449)
T PRK05291        361 LREAIKEL  368 (449)
T ss_pred             HHHHHHHH
Confidence            87766543

>cd01884 EF_Tu EF-Tu subfamily

Probab=97.95  E-value=9.3e-05  Score=67.12  Aligned_cols=87  Identities=20%  Similarity=0.145  Sum_probs=59.1

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCC-eEEEEEccCCCCHHHHHH-----HHHHHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRNA-----WATYFAK  174 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~-~ilVlNK~DL~~~~~~~~-----w~~~l~~  174 (383)
                      -||| .++.+.+...+..+|+++.|+|+..+......++..++.  ++| .++++||+|++...+...     ..+++.+
T Consensus        72 tPG~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~  150 (195)
T cd01884          72 CPGH-ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSK  150 (195)
T ss_pred             CcCH-HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            3888 456777777889999999999998765544434333332  556 678999999975433222     2233444


Q ss_pred             cC-----CeEEEeeCcCCCch
Q 016762          175 QG-----TKVIFSNGQLGMGT  190 (383)
Q Consensus       175 ~g-----~~vi~iSa~~g~Gi  190 (383)
                      .|     ..++++|+.+|.++
T Consensus       151 ~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         151 YGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             hcccccCCeEEEeeCccccCC
Confidence            34     46899999998875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=97.95  E-value=3.5e-05  Score=66.94  Aligned_cols=102  Identities=14%  Similarity=0.132  Sum_probs=64.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||.        ||| ..+.......+..+|++++|+|+..+.....  ..+..++     .+.|+++++||+|+
T Consensus        49 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~  119 (167)
T cd04160          49 NARLKFWDL--------GGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL  119 (167)
T ss_pred             CEEEEEEEC--------CCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence            566777874        443 3444555577999999999999976532111  1222222     26899999999998


Q ss_pred             CCHH---HHHHHHHHHH----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMA---DRNAWATYFA----KQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~---~~~~w~~~l~----~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .+..   +...+.+...    ..+..++.+|+++|.|++++.+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l  164 (167)
T cd04160         120 PDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL  164 (167)
T ss_pred             ccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence            6543   2333322211    123468899999999998775443

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.94  E-value=2.4e-05  Score=68.68  Aligned_cols=55  Identities=22%  Similarity=0.358  Sum_probs=36.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      .+|+++|.+|||||||+|++++.. ......+..+.+.  ..+.++.   .+.++||||.-
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   62 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE   62 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence            579999999999999999998643 2222223222222  2233332   57899999964

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PLN03127 Elongation factor Tu; Provisional

Probab=97.94  E-value=1.5e-05  Score=81.21  Aligned_cols=58  Identities=24%  Similarity=0.415  Sum_probs=43.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC------Ccc---------ccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~------~~~---------~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|+|||||+|+|++.      ...         ..+...|+|.+......   +..+.++||||..
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence            4578999999999999999999732      111         12234899999765555   3468999999984

>cd04157 Arl6 Arl6 subfamily

Probab=97.93  E-value=4.7e-05  Score=65.64  Aligned_cols=102  Identities=14%  Similarity=0.089  Sum_probs=63.5

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-------cCCCeEEEEEcc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNRE  157 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-------~~k~~ilVlNK~  157 (383)
                      +..+.+||.        ||+ .+........+..+|.+++|+|+.++.+...  ..+..++       .+.|+++|+||+
T Consensus        44 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~  114 (162)
T cd04157          44 NLSFTAFDM--------SGQ-GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKM  114 (162)
T ss_pred             CEEEEEEEC--------CCC-HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCc
Confidence            456678874        333 3334444567899999999999987643211  1233221       257999999999


Q ss_pred             CCCCHHHHHHHHHHHH--H---cCCeEEEeeCcCCCchhhhhHHH
Q 016762          158 DMISMADRNAWATYFA--K---QGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       158 DL~~~~~~~~w~~~l~--~---~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      |+.+......+...+.  .   ....++.+|+++|.|++++.+.+
T Consensus       115 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l  159 (162)
T cd04157         115 DLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWL  159 (162)
T ss_pred             cccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence            9975432222222221  1   11246789999999998886544

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=97.93  E-value=1.5e-05  Score=76.37  Aligned_cols=58  Identities=24%  Similarity=0.407  Sum_probs=34.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccC-CCC------CceeEEE--EEEe-----CCcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRP------GVTRVLK--WVRF-----GKDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-~~p------gtT~~~~--~~~~-----~~~i~l~DTpG~i~  274 (383)
                      .++|++||-+|+|||||||+|.+....... ..+      ..|..+.  ...+     .-++.++|||||=.
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd   75 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD   75 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence            468999999999999999999986543332 111      1112222  2222     12477999999953

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04149 Arf6 Arf6 subfamily

Probab=97.92  E-value=4.1e-05  Score=67.41  Aligned_cols=102  Identities=12%  Similarity=0.059  Sum_probs=64.1

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D  158 (383)
                      .+..+.+||..        |+ .+........+..+|++++|+|+.++.+..+  ..+.+.+     .+.|+++|.||+|
T Consensus        51 ~~~~~~l~Dt~--------G~-~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  121 (168)
T cd04149          51 KNVKFNVWDVG--------GQ-DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQD  121 (168)
T ss_pred             CCEEEEEEECC--------CC-HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcC
Confidence            35668888842        32 4444444567899999999999987643322  1232332     2479999999999


Q ss_pred             CCC---HHHHHHHHHH--HHHcCCeEEEeeCcCCCchhhhhHH
Q 016762          159 MIS---MADRNAWATY--FAKQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       159 L~~---~~~~~~w~~~--l~~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +..   .++...+.+.  +.+....++.+||++|.|+.++.+.
T Consensus       122 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~  164 (168)
T cd04149         122 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW  164 (168)
T ss_pred             CccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence            863   3333333211  1111235678999999998876544

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=97.92  E-value=3.3e-05  Score=67.52  Aligned_cols=86  Identities=17%  Similarity=0.211  Sum_probs=58.4

Q ss_pred             HHHHHHhhhcCeEEEEEecCCCC-----CCC-c-----HHHHHH--------hcCCCeEEEEEccCCCCHHHHHHHH--H
Q 016762          112 KELKDQLKLMDVVIEVRDARIPL-----STT-H-----PLMDQW--------LGNRKRILVLNREDMISMADRNAWA--T  170 (383)
Q Consensus       112 ~~l~~~idr~DlILeV~DaR~p~-----~~~-~-----~~l~~~--------l~~k~~ilVlNK~DL~~~~~~~~w~--~  170 (383)
                      ..+...+..+|+|++|+|+..+.     ... +     .++...        ..++|+++|+||+|+........|.  .
T Consensus        66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~  145 (176)
T cd01881          66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE  145 (176)
T ss_pred             HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH
Confidence            34456688899999999998763     111 1     011111        2368999999999998877665552  1


Q ss_pred             HHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          171 YFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       171 ~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .....+..++.+|++.+.|+.++.+.+
T Consensus       146 ~~~~~~~~~~~~Sa~~~~gl~~l~~~l  172 (176)
T cd01881         146 LALEEGAEVVPISAKTEEGLDELIRAI  172 (176)
T ss_pred             HhcCCCCCEEEEehhhhcCHHHHHHHH
Confidence            222234678999999999998876654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=97.92  E-value=8.8e-06  Score=74.67  Aligned_cols=60  Identities=28%  Similarity=0.433  Sum_probs=39.1

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccC-------CCCCceeE-EE--EEE---eCCcEEEEecCcccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV-LK--WVR---FGKDLEFLDSPGIIP  274 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-------~~pgtT~~-~~--~~~---~~~~i~l~DTpG~i~  274 (383)
                      +...+||+||-++-|||||+|+|..++....+       +.|-||-- ..  .+.   +.-++.++|||||=.
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD  116 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD  116 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence            35678999999999999999999876543322       23333321 11  111   112577999999964

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=97.92  E-value=7.3e-05  Score=74.93  Aligned_cols=92  Identities=16%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             HHHHHHHHhhhcCeEEEEEecCCC---CCCCc-HHH----HHH---hcCCCeEEEEEccCCCCHHHHHHHHHHHHH-cC-
Q 016762          110 TEKELKDQLKLMDVVIEVRDARIP---LSTTH-PLM----DQW---LGNRKRILVLNREDMISMADRNAWATYFAK-QG-  176 (383)
Q Consensus       110 ~~~~l~~~idr~DlILeV~DaR~p---~~~~~-~~l----~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~-~g-  176 (383)
                      +...+.+.++++|++++|+|+...   ....+ ..+    ..+   +.++|.++|+||+|+............+.+ .+ 
T Consensus       227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~  306 (390)
T PRK12298        227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGW  306 (390)
T ss_pred             HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCC
Confidence            344555689999999999998622   11111 111    111   125899999999999876655444444433 23 


Q ss_pred             -CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          177 -TKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       177 -~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                       ..++++|++++.|+.+|.+.+.++.
T Consensus       307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L  332 (390)
T PRK12298        307 EGPVYLISAASGLGVKELCWDLMTFI  332 (390)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHh
Confidence             3688999999999999877665554

>cd04154 Arl2 Arl2 subfamily

Probab=97.92  E-value=1.8e-05  Score=69.71  Aligned_cols=102  Identities=13%  Similarity=0.165  Sum_probs=64.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||.        ||+ ..+.......++.+|++++|+|+.++.+..+  ..+..++     .+.|+++|+||+|+
T Consensus        57 ~~~l~l~D~--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  127 (173)
T cd04154          57 GYKLNIWDV--------GGQ-KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDL  127 (173)
T ss_pred             CEEEEEEEC--------CCC-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccc
Confidence            456778884        332 3333444567899999999999987633222  2233332     36899999999999


Q ss_pred             CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ..........+.+.     ..+..++.+|+++|.|+.++.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  170 (173)
T cd04154         128 PGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL  170 (173)
T ss_pred             ccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence            75322222222221     223578899999999998875543

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PLN03110 Rab GTPase; Provisional

Probab=97.92  E-value=2.5e-05  Score=71.80  Aligned_cols=56  Identities=14%  Similarity=0.265  Sum_probs=38.5

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+++|.+.. ......|....+  ...+.++.   .+.|+||||-.
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~-~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~   72 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNE-FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE   72 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence            4689999999999999999999754 232333333333  33344433   57789999964

>cd01862 Rab7 Rab7 subfamily

Probab=97.91  E-value=4.7e-05  Score=66.32  Aligned_cols=103  Identities=12%  Similarity=0.059  Sum_probs=65.2

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-----CCCeEEEEEcc
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-----NRKRILVLNRE  157 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~-----~k~~ilVlNK~  157 (383)
                      +.+.+||.        ||+ ..........++++|.+++++|+.++.+..+..     +.....     +.|+++|+||+
T Consensus        49 ~~~~~~D~--------~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  119 (172)
T cd01862          49 VTLQIWDT--------AGQ-ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKI  119 (172)
T ss_pred             EEEEEEeC--------CCh-HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECc
Confidence            44556764        333 344444557789999999999998765432221     111122     57999999999


Q ss_pred             CCCCHH--HHHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHHH
Q 016762          158 DMISMA--DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       158 DL~~~~--~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      |+..+.  .......+.+..+ ..++.+|+++|.|+.++.+.+.+
T Consensus       120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~  164 (172)
T cd01862         120 DLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIAR  164 (172)
T ss_pred             ccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            998321  1112222334444 67889999999999888766544

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=97.91  E-value=6.2e-05  Score=76.09  Aligned_cols=104  Identities=16%  Similarity=0.180  Sum_probs=67.3

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CCCcHH-HHHH--hcCCCeEEEEEccCCCCHH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPL-MDQW--LGNRKRILVLNREDMISMA  163 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~-~~~~~~-l~~~--l~~k~~ilVlNK~DL~~~~  163 (383)
                      ..+.+||.        ||| .++...+..-+..+|+++.|+|++.+. .....+ +..+  ...++.++|+||+|+.+.+
T Consensus        85 ~~i~liDt--------PG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~  155 (411)
T PRK04000         85 RRVSFVDA--------PGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE  155 (411)
T ss_pred             cEEEEEEC--------CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccch
Confidence            34556663        676 456666666677889999999999764 222222 2222  2235789999999998754


Q ss_pred             HHH----HHHHHHHH---cCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          164 DRN----AWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       164 ~~~----~w~~~l~~---~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ...    ...+.+..   .+..++++|+++|.|+.+|.+.+...
T Consensus       156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~  199 (411)
T PRK04000        156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEE  199 (411)
T ss_pred             hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence            321    22222222   13578899999999999988777653

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=9.9e-05  Score=65.82  Aligned_cols=101  Identities=14%  Similarity=0.077  Sum_probs=70.7

Q ss_pred             CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhc-----CCCeEEEEEccCCCCHHHHHHH--HHHH
Q 016762          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG-----NRKRILVLNREDMISMADRNAW--ATYF  172 (383)
Q Consensus       102 w~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l~-----~k~~ilVlNK~DL~~~~~~~~w--~~~l  172 (383)
                      |....++++...+..+++.+++++.|+|..+..+..+..  |+....     +.-+++|.||.||+++++...-  ...-
T Consensus        76 WDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA  155 (221)
T KOG0094|consen   76 WDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA  155 (221)
T ss_pred             EecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHH
Confidence            444445999999999999999999999998766655432  344332     1235789999999998753221  1223


Q ss_pred             HHcCCeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          173 AKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       173 ~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                      ++.+..++.+|++.|.++++|-+.+.....
T Consensus       156 kel~a~f~etsak~g~NVk~lFrrIaa~l~  185 (221)
T KOG0094|consen  156 KELNAEFIETSAKAGENVKQLFRRIAAALP  185 (221)
T ss_pred             HHhCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence            345667778999999999988666555443

>cd04106 Rab23_lke Rab23-like subfamily

Probab=97.91  E-value=4.9e-05  Score=65.61  Aligned_cols=103  Identities=14%  Similarity=0.083  Sum_probs=67.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMI  160 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL~  160 (383)
                      ...++.+||.        ||+ .+........+..+|.++.|+|+.++.+.....     +.....+.|+++|.||+|+.
T Consensus        49 ~~~~~~i~D~--------~G~-~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~  119 (162)
T cd04106          49 EDVRLMLWDT--------AGQ-EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL  119 (162)
T ss_pred             CEEEEEEeeC--------Cch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence            3456778884        343 444555557789999999999987665432211     11112378999999999997


Q ss_pred             CHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          161 SMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       161 ~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .....  .......+..+.+++.+|++.|.|+.++.+.+
T Consensus       120 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (162)
T cd04106         120 DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL  158 (162)
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            54321  12223344557788999999999988876554

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04112 Rab26 Rab26 subfamily

Probab=97.91  E-value=7.9e-05  Score=66.88  Aligned_cols=105  Identities=11%  Similarity=0.112  Sum_probs=66.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||.        ||+ .+........+..+|+++.|||+..+.+..+.     ++.... .+.|+++|+||+|+.
T Consensus        49 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~  119 (191)
T cd04112          49 KVKLQIWDT--------AGQ-ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS  119 (191)
T ss_pred             EEEEEEEeC--------CCc-HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence            456677774        332 33444445678899999999999765432211     111212 257899999999996


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ....  ...........+..++.+|++.|.|+.++.+.+.+.
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~  161 (191)
T cd04112         120 GERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKE  161 (191)
T ss_pred             hccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            4321  122222233456788999999999999886665543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK00049 elongation factor Tu; Reviewed

Probab=97.90  E-value=2e-05  Score=79.29  Aligned_cols=58  Identities=22%  Similarity=0.342  Sum_probs=43.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC------ccc---------cCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~------~~~---------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|+|||||+++|++..      ...         -+...|+|.+......   +..+.++||||..
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence            45789999999999999999998621      101         1125799999765555   4468999999973

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.90  E-value=2.2e-05  Score=68.40  Aligned_cols=53  Identities=19%  Similarity=0.287  Sum_probs=35.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||++++......  ...|.+..+...+.. .-.+.+.||||.-
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~~~~~~~~~~~~l~D~~G~~   55 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD   55 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcceEEEEECCEEEEEEECCCCH
Confidence            6999999999999999999644322  223322222222333 3357899999973

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.90  E-value=2.4e-05  Score=69.95  Aligned_cols=55  Identities=22%  Similarity=0.348  Sum_probs=36.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..+|.++|.+|||||||++++.........++.|.  +...+.. +-.+.++||||.-
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~--~~~~~~~~~~~~~l~D~~G~~   72 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGF--NVETVEYKNLKFTMWDVGGQD   72 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCcccc--ceEEEEECCEEEEEEECCCCH
Confidence            36899999999999999999964432222222222  2222233 3357899999973

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.90  E-value=2.8e-05  Score=68.20  Aligned_cols=55  Identities=18%  Similarity=0.181  Sum_probs=34.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|++..... ....+..+.......+..+   -.+.++||||.-
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE   60 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCCh
Confidence            699999999999999999985431 1122222222222212222   257899999974

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.90  E-value=1.3e-05  Score=85.96  Aligned_cols=57  Identities=26%  Similarity=0.480  Sum_probs=43.1

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-----CCcEEEEecCcc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-----GKDLEFLDSPGI  272 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-----~~~i~l~DTpG~  272 (383)
                      .+++.|+++|++|+|||||+|+|++.. ...+..+|+|.++..+.  .     +..+.++||||.
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~-~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh  305 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQ-IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH  305 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhcc-CccccCCccccccceEEEEEEecCCceEEEEEECCcH
Confidence            456789999999999999999998654 34455678887753222  1     246899999996

>cd04132 Rho4_like Rho4-like subfamily

Probab=97.90  E-value=2.4e-05  Score=69.63  Aligned_cols=54  Identities=22%  Similarity=0.278  Sum_probs=34.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeC--C--cEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG--K--DLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~--~--~i~l~DTpG~  272 (383)
                      ++|+++|.+|||||||+|++.+.. ......|.+..+. ..+...  .  .+.+.||||.
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~   59 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGK-FPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ   59 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCc-CCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc
Confidence            379999999999999999999754 2222222222221 122222  2  4678999995

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.89  E-value=1.5e-05  Score=83.82  Aligned_cols=36  Identities=19%  Similarity=0.403  Sum_probs=27.5

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-ceeE
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRV  254 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-tT~~  254 (383)
                      ++.|+++|.+|+|||||+|+|++...  +...+| +|++
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~   40 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQH   40 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecc
Confidence            45699999999999999999997642  334444 6664

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.88  E-value=1.3e-05  Score=76.22  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +|+++|.+|+|||||+|+|...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~   22 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYA   22 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999999753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=97.88  E-value=3.8e-05  Score=68.53  Aligned_cols=103  Identities=12%  Similarity=0.083  Sum_probs=63.2

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D  158 (383)
                      .+..+.+||.        ||+ +++.......++.+|++++|+|+.++.+...  ..+..+.     .++|+++|+||+|
T Consensus        50 ~~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D  120 (183)
T cd04152          50 KGITFHFWDV--------GGQ-EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQD  120 (183)
T ss_pred             CceEEEEEEC--------CCc-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcC
Confidence            4566778884        232 4444444466899999999999876532211  1222221     2689999999999


Q ss_pred             CCCH---HHHHHHHHHHHHc----CCeEEEeeCcCCCchhhhhHHHH
Q 016762          159 MISM---ADRNAWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       159 L~~~---~~~~~w~~~l~~~----g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +...   ++...+... ...    +..++++|+++|.|++++.+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~  166 (183)
T cd04152         121 LPNALSVSEVEKLLAL-HELSASTPWHVQPACAIIGEGLQEGLEKLY  166 (183)
T ss_pred             ccccCCHHHHHHHhCc-cccCCCCceEEEEeecccCCCHHHHHHHHH
Confidence            8642   222222111 111    13467899999999988865543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.88  E-value=4.2e-05  Score=65.06  Aligned_cols=91  Identities=7%  Similarity=-0.018  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHH-----Hc
Q 016762          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQ  175 (383)
Q Consensus       108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~l~-----~~  175 (383)
                      ..........+..+|.+++|+|+..+.....  ..+..+.     .++|+++|+||+|+.+......+...+.     ..
T Consensus        55 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  134 (159)
T cd04159          55 PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDR  134 (159)
T ss_pred             HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCC
Confidence            4445555677899999999999976433211  1222222     2579999999999976544333333321     12


Q ss_pred             CCeEEEeeCcCCCchhhhhHHHH
Q 016762          176 GTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       176 g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ...++.+|+++|.|+.++.+.+.
T Consensus       135 ~~~~~~~Sa~~~~gi~~l~~~l~  157 (159)
T cd04159         135 EVSCYSISCKEKTNIDIVLDWLI  157 (159)
T ss_pred             ceEEEEEEeccCCChHHHHHHHh
Confidence            24678899999999988866554

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.88  E-value=2.6e-05  Score=67.88  Aligned_cols=103  Identities=11%  Similarity=0.099  Sum_probs=62.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHhc-----CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l~-----~k~~ilVlNK~D  158 (383)
                      .+..+.+||..        |+ .+........+..+|++++|+|+.++.+..  ...+..++.     +.|++++.||+|
T Consensus        42 ~~~~~~l~D~~--------G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  112 (159)
T cd04150          42 KNISFTVWDVG--------GQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQD  112 (159)
T ss_pred             CCEEEEEEECC--------CC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCC
Confidence            35667788853        22 344445557789999999999997643221  122333322     479999999999


Q ss_pred             CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      |.......+..+.+.     ..+..++.+|+++|.|+.++.+.+
T Consensus       113 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l  156 (159)
T cd04150         113 LPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL  156 (159)
T ss_pred             CCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence            964321112112221     112245678999999998875543

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.88  E-value=2.1e-05  Score=68.44  Aligned_cols=54  Identities=30%  Similarity=0.425  Sum_probs=36.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i~  274 (383)
                      +|+++|.+|||||||++++....  ..+..+.++...  ..+.++.   .+.++||||...
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~   59 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ   59 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence            48999999999999999998643  234444444222  2223332   367999999864

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=97.87  E-value=2.7e-05  Score=70.50  Aligned_cols=53  Identities=21%  Similarity=0.339  Sum_probs=35.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC--C--cEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG--K--DLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~--~--~i~l~DTpG~  272 (383)
                      +|+++|.+|||||||+|++.+.. ......|....+.  ..+.++  .  .+.+.||||-
T Consensus         2 KivivG~~~vGKTsli~~l~~~~-~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~   60 (201)
T cd04107           2 KVLVIGDLGVGKTSIIKRYVHGI-FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ   60 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc
Confidence            69999999999999999999653 2222233333332  233333  2  3679999996

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=97.87  E-value=2.8e-05  Score=68.65  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=22.2

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      .++|+++|.+|||||||+|++.+..
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~   28 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNK   28 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC
Confidence            3689999999999999999998653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.87  E-value=9.6e-05  Score=65.61  Aligned_cols=72  Identities=19%  Similarity=0.262  Sum_probs=52.7

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH----HHHHHHHHHHcC--CeEEEeeCcCCCch
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD----RNAWATYFAKQG--TKVIFSNGQLGMGT  190 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~----~~~w~~~l~~~g--~~vi~iSa~~g~Gi  190 (383)
                      +.+|.+++|+|++.+....+.++..++.  ++|+++++||+|+.+..+    ...+.+.+...+  ..++++|+++|.|+
T Consensus        99 ~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi  178 (179)
T TIGR03598        99 ENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI  178 (179)
T ss_pred             hhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence            3568999999998877766655544443  689999999999986543    334444555444  37899999999986

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.86  E-value=0.00038  Score=62.21  Aligned_cols=114  Identities=18%  Similarity=0.150  Sum_probs=71.9

Q ss_pred             CcEEEEcCCCCCcCCCchHH-HHHHHHHHHHh---hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHI-AKTEKELKDQL---KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~-~~~~~~l~~~i---dr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~  161 (383)
                      .++.+||..-....-.+..+ ++....+...+   +.++++++|+|+..+......++..++.  +.|+++++||+|+.+
T Consensus        70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~  149 (196)
T PRK00454         70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK  149 (196)
T ss_pred             CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence            56788886542211112222 23333333333   4567899999988776655544444443  678999999999987


Q ss_pred             HHHHHH----HHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          162 MADRNA----WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       162 ~~~~~~----w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      ..+...    ....+......++++|++.|.|+.++.+.+.++.
T Consensus       150 ~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        150 KGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            654433    2233333356788999999999999988776654

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=97.86  E-value=8.5e-05  Score=64.16  Aligned_cols=102  Identities=16%  Similarity=-0.029  Sum_probs=64.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      ...+.+||..        |+ .++.......+..+|.++.|+|+.++.+.....  +..+.     .+.|+++|+||+|+
T Consensus        49 ~~~~~i~Dt~--------G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl  119 (164)
T cd04145          49 WAILDILDTA--------GQ-EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL  119 (164)
T ss_pred             EEEEEEEECC--------CC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccc
Confidence            3456677743        32 344445557788999999999998754332211  11111     25799999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .....  ...-.+.....+..++.+|++.|.|+.++.+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145         120 EHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             cccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            75421  111122333456778999999999998875544

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.85  E-value=6.9e-05  Score=68.22  Aligned_cols=104  Identities=11%  Similarity=-0.034  Sum_probs=66.7

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDM  159 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL  159 (383)
                      .....+-+||....         .++.......+..+|+++.|+|..++.+..+..     +.+...+.|+++|.||+||
T Consensus        41 ~~~~~l~iwDt~G~---------e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl  111 (200)
T smart00176       41 RGPIRFNVWDTAGQ---------EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDV  111 (200)
T ss_pred             CEEEEEEEEECCCc---------hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence            34567788885332         334444446789999999999998765443221     2222236799999999998


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ........-.......+..++.+|++.|.|+.++-+.+
T Consensus       112 ~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l  149 (200)
T smart00176      112 KDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWL  149 (200)
T ss_pred             ccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            54321111112233456788999999999998775443

Ran is involved in the active transport of proteins through nuclear pores.

>cd04111 Rab39 Rab39 subfamily

Probab=97.85  E-value=2.8e-05  Score=71.30  Aligned_cols=55  Identities=29%  Similarity=0.453  Sum_probs=36.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe--CC--cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GK--DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~--~~--~i~l~DTpG~i  273 (383)
                      .+|+++|.+|||||||+|+|++.+.... ..|.++.+..  .+.+  +.  .+.+.||||--
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~   63 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE   63 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence            5799999999999999999997653222 2243333432  2222  22  46799999953

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=97.85  E-value=2.3e-05  Score=70.32  Aligned_cols=56  Identities=23%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|++.+.... ...+..+.+.. ..+.++.   .+.++||||.-
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~   64 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE   64 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECCEEEEEEEEeCCCCc
Confidence            468999999999999999999865421 11111222211 1122332   35689999974

>cd04127 Rab27A Rab27a subfamily

Probab=97.85  E-value=6.2e-05  Score=66.40  Aligned_cols=104  Identities=13%  Similarity=0.070  Sum_probs=67.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL  159 (383)
                      ...+.+||.        ||+ .+........++.+|.++.|+|..++.+..+..     +....  .+.|+++|.||+|+
T Consensus        62 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl  132 (180)
T cd04127          62 RIHLQLWDT--------AGQ-ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL  132 (180)
T ss_pred             EEEEEEEeC--------CCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence            355678885        333 455555567789999999999998654433321     11111  25689999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+...  .....+...+.+..++.+|++.|.|++++.+.+.+
T Consensus       133 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~  174 (180)
T cd04127         133 EDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLD  174 (180)
T ss_pred             hhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            65321  11222233345677899999999999988665543

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=97.84  E-value=0.00013  Score=65.95  Aligned_cols=104  Identities=14%  Similarity=0.122  Sum_probs=66.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEE
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLN  155 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-----~~k~~ilVlN  155 (383)
                      ..+.+.+||..        |+ .++.......+..+|.++.|+|...+.+....     ++....     .+.|+++|.|
T Consensus        48 ~~~~l~l~Dt~--------G~-~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N  118 (201)
T cd04107          48 TVVRLQLWDIA--------GQ-ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLAN  118 (201)
T ss_pred             CEEEEEEEECC--------Cc-hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence            34567788743        22 33444445678999999999998876554332     122221     2568999999


Q ss_pred             ccCCCCHH--HHHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHH
Q 016762          156 REDMISMA--DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       156 K~DL~~~~--~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      |+||.+..  ......++.+..+ ..++.+|+++|.|+.++.+.+.
T Consensus       119 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  164 (201)
T cd04107         119 KCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLV  164 (201)
T ss_pred             CCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence            99996311  1122223344455 5788999999999988755544

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12739 elongation factor G; Reviewed

Probab=97.84  E-value=2.4e-05  Score=84.08  Aligned_cols=58  Identities=21%  Similarity=0.334  Sum_probs=41.5

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCc-----cccC------------CCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~------------~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      ..+|+|+|.+|+|||||+|+|+....     ..+.            ...|+|.+.....+   +..+.++||||+..
T Consensus         8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            34799999999999999999964211     1122            25688888643333   55789999999863

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=97.83  E-value=9.6e-05  Score=67.50  Aligned_cols=89  Identities=19%  Similarity=0.248  Sum_probs=56.0

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C-CCeEEEEEccCCCCH--HHH----HHHHHHHHH
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISM--ADR----NAWATYFAK  174 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~-k~~ilVlNK~DL~~~--~~~----~~w~~~l~~  174 (383)
                      ||| .++...+...+..+|+++.|+|+..+..........+..  + +++++|+||+|+...  +..    ....+.+..
T Consensus        85 pG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~  163 (208)
T cd04166          85 PGH-EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAK  163 (208)
T ss_pred             CcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHH
Confidence            666 445555666789999999999998765443333222221  3 456778999999742  111    122222334


Q ss_pred             cC---CeEEEeeCcCCCchhhh
Q 016762          175 QG---TKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       175 ~g---~~vi~iSa~~g~Gi~~L  193 (383)
                      .+   ..++++|+++|.|+.+.
T Consensus       164 ~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         164 LGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             cCCCCceEEEEeCCCCCCCccC
Confidence            44   34889999999987643

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04122 Rab14 Rab14 subfamily

Probab=97.82  E-value=0.00011  Score=64.14  Aligned_cols=98  Identities=15%  Similarity=0.222  Sum_probs=64.2

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEcc
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRE  157 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~  157 (383)
                      ..+.+.+||..        |+ .+........++.+|.++.|+|..++.+...  +..++        .+.|+++|.||+
T Consensus        49 ~~~~l~i~Dt~--------G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iiiv~nK~  117 (166)
T cd04122          49 QKIKLQIWDTA--------GQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKA  117 (166)
T ss_pred             EEEEEEEEECC--------Cc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECc
Confidence            34567888842        32 4444555667899999999999987654332  22222        246899999999


Q ss_pred             CCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762          158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       158 DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~  194 (383)
                      |+......  ..-.+...+.+..++.+|+++|.|+.++.
T Consensus       118 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f  156 (166)
T cd04122         118 DLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF  156 (166)
T ss_pred             ccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99654221  11112233456788899999999998863

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=97.82  E-value=7.4e-05  Score=64.96  Aligned_cols=79  Identities=18%  Similarity=0.147  Sum_probs=52.3

Q ss_pred             hcCeEEEEEecCCCCCCC-cH--HHHHH----hcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh
Q 016762          120 LMDVVIEVRDARIPLSTT-HP--LMDQW----LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK  192 (383)
Q Consensus       120 r~DlILeV~DaR~p~~~~-~~--~l~~~----l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~  192 (383)
                      .+|++++|+|+..+.+.. ..  ++...    ..+.|+++|+||+|+..........++....+..++.+|+++|.|+++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE  158 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence            368999999998765421 11  11111    226899999999999876544332222222346788999999999998


Q ss_pred             hhHHHH
Q 016762          193 LSRLAK  198 (383)
Q Consensus       193 L~~~l~  198 (383)
                      +.+.+.
T Consensus       159 l~~~l~  164 (168)
T cd01897         159 VKNKAC  164 (168)
T ss_pred             HHHHHH
Confidence            866543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=97.82  E-value=3.8e-05  Score=67.70  Aligned_cols=54  Identities=24%  Similarity=0.279  Sum_probs=35.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC---CcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~---~~i~l~DTpG~i  273 (383)
                      +|++||.+|||||||+|++.+.. ....-.|.+..+..  .+.++   ..+.+.||||.-
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE   60 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence            58999999999999999999753 22222233333332  22232   257899999974

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.81  E-value=8.7e-05  Score=65.51  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=63.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||..-   |      ..+.......++.+|++++|+|+..+.+..  ...+..++     .+.|+++++||+|+
T Consensus        58 ~~~~~l~D~~G---~------~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl  128 (174)
T cd04153          58 NIRFLMWDIGG---Q------ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL  128 (174)
T ss_pred             CeEEEEEECCC---C------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence            56678888432   2      334444456789999999999987654322  12233333     24799999999998


Q ss_pred             CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ..........+.+.     ..+..++.+|+++|.|+.++.+.+
T Consensus       129 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l  171 (174)
T cd04153         129 KGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI  171 (174)
T ss_pred             CCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence            64211122212221     123457889999999988775443

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04121 Rab40 Rab40 subfamily

Probab=97.81  E-value=6.5e-05  Score=67.73  Aligned_cols=100  Identities=15%  Similarity=0.061  Sum_probs=67.4

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMI  160 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL~  160 (383)
                      ....+-+||..-         +.+........+..+|.+|+|||..++.+..+..     +.....+.|+++|.||+||.
T Consensus        53 ~~~~l~iwDt~G---------~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~  123 (189)
T cd04121          53 RRVKLQLWDTSG---------QGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA  123 (189)
T ss_pred             EEEEEEEEeCCC---------cHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence            345566777432         2445555556789999999999998776554432     22222367999999999996


Q ss_pred             C-----HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          161 S-----MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       161 ~-----~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .     .++.+.|   .++.+..++.+|++.|.|++++-+.+
T Consensus       124 ~~~~v~~~~~~~~---a~~~~~~~~e~SAk~g~~V~~~F~~l  162 (189)
T cd04121         124 FKRQVATEQAQAY---AERNGMTFFEVSPLCNFNITESFTEL  162 (189)
T ss_pred             hccCCCHHHHHHH---HHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            4     2233333   34567789999999999998874444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PLN03108 Rab family protein; Provisional

Probab=97.81  E-value=5.1e-05  Score=69.39  Aligned_cols=57  Identities=25%  Similarity=0.358  Sum_probs=37.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..+|+++|.+|||||||+|+|++...... .+..|.+.....+.++.   .+.++||+|-.
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~   66 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE   66 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence            36899999999999999999997542221 12233333333334432   46799999964

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.81  E-value=3.2e-05  Score=81.45  Aligned_cols=37  Identities=24%  Similarity=0.387  Sum_probs=27.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCC-CceeE
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRV  254 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-gtT~~  254 (383)
                      +++.|+++|.+|+|||||+|+|++..  .++..+ +.|.+
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~   42 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQH   42 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEe
Confidence            45679999999999999999998764  233344 35554

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.81  E-value=4.3e-05  Score=67.66  Aligned_cols=55  Identities=18%  Similarity=0.260  Sum_probs=37.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      .++|.++|.+|||||||++++.....  ....|.+..+...+.. ...+.++||||.-
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~   68 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNVETVTYKNISFTVWDVGGQD   68 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccceEEEEECCEEEEEEECCCCh
Confidence            46899999999999999999964332  2333433333333333 3357899999974

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=97.81  E-value=8.6e-05  Score=63.96  Aligned_cols=102  Identities=12%  Similarity=0.051  Sum_probs=63.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +.++.+||..        |+ .+........+..+|+++.|+|+..+.+...  ..+..+.     .+.|+++++||+|+
T Consensus        42 ~~~~~i~D~~--------G~-~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~  112 (158)
T cd00878          42 NVSFTVWDVG--------GQ-DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDL  112 (158)
T ss_pred             CEEEEEEECC--------CC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCC
Confidence            4667888843        33 2333444567899999999999987632222  1222222     26799999999999


Q ss_pred             CCHH---HHHHHHHHH--HHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMA---DRNAWATYF--AKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~---~~~~w~~~l--~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ....   +...+....  ......++.+|++.|.|+.++.+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l  155 (158)
T cd00878         113 PGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL  155 (158)
T ss_pred             ccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence            8644   222222111  1122468889999999998875443

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=97.81  E-value=9.7e-05  Score=68.08  Aligned_cols=87  Identities=22%  Similarity=0.256  Sum_probs=54.8

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCC----CCc---HHH---HHHhcCCCeEEEEEccCCCC----HHHHHH--
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLS----TTH---PLM---DQWLGNRKRILVLNREDMIS----MADRNA--  167 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~----~~~---~~l---~~~l~~k~~ilVlNK~DL~~----~~~~~~--  167 (383)
                      ||| .++...+...+..+|++++|+|+..+..    ...   ...   ......+|+++++||+|+..    ......  
T Consensus        85 pG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~  163 (219)
T cd01883          85 PGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIK  163 (219)
T ss_pred             CCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHH
Confidence            676 4555666667888999999999987421    111   111   11122467888999999983    222222  


Q ss_pred             --HHHHHHHcC-----CeEEEeeCcCCCchh
Q 016762          168 --WATYFAKQG-----TKVIFSNGQLGMGTM  191 (383)
Q Consensus       168 --w~~~l~~~g-----~~vi~iSa~~g~Gi~  191 (383)
                        ....+...+     ..++++|+++|.|+.
T Consensus       164 ~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         164 KELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence              222344443     458999999999975

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=97.81  E-value=1.5e-05  Score=69.68  Aligned_cols=76  Identities=22%  Similarity=0.169  Sum_probs=53.0

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHHHHH-h-cCCCeEEEEEccCCCCHHHHHHHHHHH-HHcCCeEEEeeCcCCCchhhhhH
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~~~~~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      ++.|+|+.|+|+...  .++..+... + .++|.++|+||+|++.+....-..+.+ +..|.+++++|+++|.|+++|++
T Consensus        77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~  154 (156)
T PF02421_consen   77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD  154 (156)
T ss_dssp             TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred             cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence            789999999999852  333333222 2 389999999999998765321111222 23588999999999999998876


Q ss_pred             H
Q 016762          196 L  196 (383)
Q Consensus       196 ~  196 (383)
                      .
T Consensus       155 ~  155 (156)
T PF02421_consen  155 A  155 (156)
T ss_dssp             H
T ss_pred             h
Confidence            4

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=97.80  E-value=0.00012  Score=64.01  Aligned_cols=100  Identities=16%  Similarity=0.175  Sum_probs=65.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED  158 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~D  158 (383)
                      ...+.+||.        ||+ .+........++.+|.++.++|+.++.+..+  +..++        .+.|+++|.||+|
T Consensus        51 ~~~l~l~D~--------~g~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~D  119 (167)
T cd01867          51 KIKLQIWDT--------AGQ-ERFRTITTAYYRGAMGIILVYDITDEKSFEN--IRNWMRNIEEHASEDVERMLVGNKCD  119 (167)
T ss_pred             EEEEEEEeC--------Cch-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHh--HHHHHHHHHHhCCCCCcEEEEEECcc
Confidence            345667774        333 4445555577899999999999876544222  22222        2468999999999


Q ss_pred             CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +.....  .+...+.....+..++.+|++.|.|+.++.+.+
T Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867         120 MEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            974321  122223344556788999999999998875443

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04120 Rab12 Rab12 subfamily

Probab=97.80  E-value=0.00013  Score=66.64  Aligned_cols=104  Identities=12%  Similarity=0.085  Sum_probs=66.9

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-cCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l-~~k~~ilVlNK~  157 (383)
                      .+...++.+||...+         .++......+++.+|.++.|||..++.+..+..     +.+.. .+.|+++|.||+
T Consensus        45 ~~~~v~l~iwDtaGq---------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~  115 (202)
T cd04120          45 RGKKIRLQIWDTAGQ---------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL  115 (202)
T ss_pred             CCEEEEEEEEeCCCc---------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence            344577888885322         444555557899999999999998766554321     11111 257899999999


Q ss_pred             CCCCHHHHH-HHHHHH-HHc-CCeEEEeeCcCCCchhhhhHH
Q 016762          158 DMISMADRN-AWATYF-AKQ-GTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       158 DL~~~~~~~-~w~~~l-~~~-g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      ||....++. .-...+ .+. +..++.+||++|.|+.++-+.
T Consensus       116 DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~  157 (202)
T cd04120         116 DCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK  157 (202)
T ss_pred             ccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence            996433211 111222 232 567889999999999887443

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>TIGR00485 EF-Tu translation elongation factor TU

Probab=97.80  E-value=3.8e-05  Score=77.17  Aligned_cols=58  Identities=21%  Similarity=0.343  Sum_probs=42.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC------Cccc---------cCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~------~~~~---------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ..++|+++|..|+|||||+++|++.      ....         .+...|+|.+...+..   +..+.++||||.-
T Consensus        11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485        11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            3578999999999999999999832      1111         1124799999866555   3458999999974

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=97.79  E-value=0.00018  Score=64.01  Aligned_cols=104  Identities=13%  Similarity=0.021  Sum_probs=64.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HH-HH---hcCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD-QW---LGNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~-~~---l~~k~~ilVlNK~DL~  160 (383)
                      .+++.+||...   |      .+........++.+|+|++|+|..++.+..+..  +. ..   ..+.|+++|.||+||.
T Consensus        48 ~~~l~i~Dt~G---~------~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  118 (187)
T cd04132          48 IIELALWDTAG---Q------EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR  118 (187)
T ss_pred             EEEEEEEECCC---c------hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence            45677888432   2      333333335689999999999998765443321  11 11   1367999999999996


Q ss_pred             CHH------HHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMA------DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~------~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +..      ....-.+.....+. .++.+|+++|.|+.++.+.+.+
T Consensus       119 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  164 (187)
T cd04132         119 KDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIE  164 (187)
T ss_pred             hCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHH
Confidence            532      01111122234455 7889999999999987555443

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04147 Ras_dva Ras-dva subfamily

Probab=97.79  E-value=3.9e-05  Score=69.33  Aligned_cols=53  Identities=26%  Similarity=0.397  Sum_probs=35.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|++.+...  ......++.+..  .+.++.   .+.++||||..
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   58 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY   58 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCch
Confidence            489999999999999999987542  222333333221  223332   57799999974

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00175 RAB Rab subfamily of small GTPases

Probab=97.79  E-value=9.9e-05  Score=63.65  Aligned_cols=101  Identities=15%  Similarity=0.169  Sum_probs=67.1

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDM  159 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~DL  159 (383)
                      ..+.+||.        ||+ .+........+..+|+++.+||..++.+...  +..++        .+.|+++|.||+|+
T Consensus        49 ~~~~l~D~--------~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~  117 (164)
T smart00175       49 VKLQIWDT--------AGQ-ERFRSITSSYYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDL  117 (164)
T ss_pred             EEEEEEEC--------CCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhc
Confidence            45667774        333 4455555677899999999999987654422  22221        25799999999998


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .....  .+...+..++.+..++.+|++.|.|+.++.+.+.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175      118 EDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             ccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            75321  12222233445778899999999999888665543

Rab GTPases are implicated in vesicle trafficking.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.79  E-value=4.6e-05  Score=66.77  Aligned_cols=53  Identities=25%  Similarity=0.261  Sum_probs=33.6

Q ss_pred             EeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCccc
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i  273 (383)
                      |+++|.+|||||||+|++.+.. ......|...... ..+.++.   .+.++||||--
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   57 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNA-FPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE   57 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCC-CCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCc
Confidence            5799999999999999999754 2222223222111 1223332   36799999964

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=97.78  E-value=0.00017  Score=67.22  Aligned_cols=105  Identities=12%  Similarity=0.073  Sum_probs=67.5

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~  157 (383)
                      ....+++.+||...+         ..+.......+..+|++++|+|..++.+..+.      ++.+...+.|+++|.||+
T Consensus        57 ~~~~v~l~iwDTaG~---------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~  127 (232)
T cd04174          57 EEQRVELSLWDTSGS---------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKT  127 (232)
T ss_pred             CCEEEEEEEEeCCCc---------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence            445577889986432         34444444678999999999999877655432      122222367899999999


Q ss_pred             CCCCH------------H--HHHHHHHHHHHcCC-eEEEeeCcCCC-chhhhhHHH
Q 016762          158 DMISM------------A--DRNAWATYFAKQGT-KVIFSNGQLGM-GTMKLSRLA  197 (383)
Q Consensus       158 DL~~~------------~--~~~~w~~~l~~~g~-~vi~iSa~~g~-Gi~~L~~~l  197 (383)
                      ||...            .  ...+..++..+.|. .++.+|+++|. |+.++-..+
T Consensus       128 DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~  183 (232)
T cd04174         128 DLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSA  183 (232)
T ss_pred             ccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHH
Confidence            98531            0  11222233345565 57889999997 788875443

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04110 Rab35 Rab35 subfamily

Probab=97.78  E-value=9.7e-05  Score=66.85  Aligned_cols=103  Identities=13%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---hcCCCeEEEEEccCCCCH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---LGNRKRILVLNREDMISM  162 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l~~k~~ilVlNK~DL~~~  162 (383)
                      ..+.+||.        ||+ .+........++.+|.+++|+|+.++.+.....  +..+   ....|+++|.||+|+.+.
T Consensus        55 ~~l~l~D~--------~G~-~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~  125 (199)
T cd04110          55 VKLQIWDT--------AGQ-ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER  125 (199)
T ss_pred             EEEEEEeC--------CCc-hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence            45667773        332 334444456788999999999998764432211  1111   125789999999999754


Q ss_pred             HH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          163 AD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       163 ~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ..  .....+.....+..++.+|+++|.|+.++.+.+..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~  164 (199)
T cd04110         126 KVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE  164 (199)
T ss_pred             cccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence            32  12222333455678899999999999988665543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=97.77  E-value=8.9e-05  Score=64.02  Aligned_cols=104  Identities=14%  Similarity=0.058  Sum_probs=66.0

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh------cCCCeEEE
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL------GNRKRILV  153 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l------~~k~~ilV  153 (383)
                      .....+.+||....         .+........+..+|++++|+|..++.+....     ++....      .+.|+++|
T Consensus        46 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv  116 (168)
T cd04119          46 NKEVRVNFFDLSGH---------PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVC  116 (168)
T ss_pred             CeEEEEEEEECCcc---------HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEE
Confidence            34566778874332         33344445678999999999999876432211     122222      24689999


Q ss_pred             EEccCCCCHH--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          154 LNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       154 lNK~DL~~~~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .||+|+.+..  ..........+.+..++.+|+++|.|+.++.+.+
T Consensus       117 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  162 (168)
T cd04119         117 ANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTL  162 (168)
T ss_pred             EEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999997322  1222222334456778999999999998886554

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04128 Spg1 Spg1p

Probab=97.77  E-value=0.00015  Score=64.76  Aligned_cols=105  Identities=12%  Similarity=0.064  Sum_probs=64.5

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh---cCCCeEEEEEccCC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL---GNRKRILVLNREDM  159 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l---~~k~~ilVlNK~DL  159 (383)
                      +....+.+||....         .++.......++.+|+++.|+|..++.+..+.  .+..+.   .....++|.||+||
T Consensus        46 ~~~~~l~iwDt~G~---------~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl  116 (182)
T cd04128          46 GTEITFSIWDLGGQ---------REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDL  116 (182)
T ss_pred             CEEEEEEEEeCCCc---------hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence            34467888885433         23333344578999999999998776554331  122222   12334789999999


Q ss_pred             CC----HH--HHHHHHH-HHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          160 IS----MA--DRNAWAT-YFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       160 ~~----~~--~~~~w~~-~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ..    .+  ....... +.+..+..++++|+++|.|+.++.+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~  162 (182)
T cd04128         117 FADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVL  162 (182)
T ss_pred             cccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            52    11  1112222 2234466788999999999998866543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PRK12736 elongation factor Tu; Reviewed

Probab=97.77  E-value=3.5e-05  Score=77.47  Aligned_cols=57  Identities=23%  Similarity=0.359  Sum_probs=42.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC------ccc---------cCCCCCceeEEEEEEe---CCcEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~------~~~---------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~  272 (383)
                      ..++|+++|.+|+|||||+++|++..      ...         .+...|+|.+......   +..+.++||||.
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh   85 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH   85 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence            45789999999999999999998621      111         1125799999765555   346899999995

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.77  E-value=2.5e-05  Score=83.16  Aligned_cols=27  Identities=37%  Similarity=0.378  Sum_probs=23.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM  242 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~  242 (383)
                      ..++|+++|.+|+|||||+|+|+....
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~   49 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSK   49 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhC
Confidence            357899999999999999999986543

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=97.77  E-value=0.00012  Score=64.53  Aligned_cols=106  Identities=17%  Similarity=0.098  Sum_probs=66.0

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHhc-----CCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWLG-----NRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l~-----~k~~ilVlNK~DL  159 (383)
                      ...+.+||..        |+ .+........+..+|+++.|+|+.++.+.... . +..++.     ..|+++|.||+|+
T Consensus        48 ~~~l~i~Dt~--------G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl  118 (170)
T cd04108          48 PFSLQLWDTA--------GQ-ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL  118 (170)
T ss_pred             EEEEEEEeCC--------Ch-HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence            4556777743        22 44444445678999999999999764333221 1 222221     2358999999999


Q ss_pred             CCHHHH---H-HHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          160 ISMADR---N-AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       160 ~~~~~~---~-~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      .+....   . .-.....+.+..++.+|++.|.|+.++.+.+.++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~  164 (170)
T cd04108         119 SSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT  164 (170)
T ss_pred             CccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            754321   1 11122234466788999999999998877665544

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04148 RGK RGK subfamily

Probab=97.76  E-value=4.4e-05  Score=70.49  Aligned_cols=55  Identities=22%  Similarity=0.168  Sum_probs=34.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCcc-c-cCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMC-P-AAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~-~-v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|++++.... . ..+..+.+.....+.+   ...+.++||||.-
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~   61 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE   61 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence            6999999999999999999754321 1 1111111112222333   2357899999985

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.76  E-value=5e-05  Score=62.32  Aligned_cols=56  Identities=25%  Similarity=0.301  Sum_probs=36.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCcc---ccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~---~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      ||.++|.+|||||||+++|.+....   ......+.|........   ...+.+.|++|...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~   62 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE   62 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccce
Confidence            5899999999999999999976643   12233344444333332   12367899999853

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.76  E-value=6.1e-05  Score=66.67  Aligned_cols=104  Identities=10%  Similarity=0.042  Sum_probs=63.1

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~D  158 (383)
                      .+..+.+||..-.         .+........++.+|.+++|+|+.++.+..  ...+..++     .+.|+++|.||+|
T Consensus        55 ~~~~l~l~D~~G~---------~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D  125 (175)
T smart00177       55 KNISFTVWDVGGQ---------DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQD  125 (175)
T ss_pred             CCEEEEEEECCCC---------hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcC
Confidence            3466788885322         344444556789999999999987654322  22233332     2468999999999


Q ss_pred             CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      |.......+..+.+.     .....++.+|+++|.|+.++.+.+.
T Consensus       126 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  170 (175)
T smart00177      126 LPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS  170 (175)
T ss_pred             cccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence            964321112112111     1112355699999999988765543

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.76  E-value=6.5e-05  Score=65.88  Aligned_cols=52  Identities=21%  Similarity=0.210  Sum_probs=33.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC-C--cEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-~--~i~l~DTpG~  272 (383)
                      +|+++|.+|||||||++++.+...  ......++.+.  ..+.++ .  .+.++||||.
T Consensus         3 ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~   59 (175)
T cd01870           3 KLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQ   59 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCc
Confidence            699999999999999999996532  12222222111  122332 2  4679999996

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PLN03126 Elongation factor Tu; Provisional

Probab=97.76  E-value=4.5e-05  Score=78.39  Aligned_cols=58  Identities=24%  Similarity=0.369  Sum_probs=42.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc---------------ccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|+|||||+|+|++....               .-....|+|.+.....+   +..+.++||||..
T Consensus        80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~  155 (478)
T PLN03126         80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA  155 (478)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence            4678999999999999999999852111               11334688888654443   4578999999964

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.76  E-value=0.00022  Score=72.04  Aligned_cols=88  Identities=18%  Similarity=0.299  Sum_probs=59.7

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHHhcCCCeEEEEEccCCCCHH--HH----HHHHHHHHH
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMISMA--DR----NAWATYFAK  174 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~---l~~~l~~k~~ilVlNK~DL~~~~--~~----~~w~~~l~~  174 (383)
                      ||| .++.+.+...+..+|+++.|+|+..+......+   +...++.++.++++||+|+.+..  ..    ......+.+
T Consensus        88 PGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~  166 (406)
T TIGR02034        88 PGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQ  166 (406)
T ss_pred             CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHH
Confidence            787 556666777789999999999998776554433   22333445678899999998522  11    122222333


Q ss_pred             cC---CeEEEeeCcCCCchhh
Q 016762          175 QG---TKVIFSNGQLGMGTMK  192 (383)
Q Consensus       175 ~g---~~vi~iSa~~g~Gi~~  192 (383)
                      .+   ..++++|+.+|.|+.+
T Consensus       167 ~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       167 LGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             cCCCCccEEEeecccCCCCcc
Confidence            34   3588999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.76  E-value=2.8e-05  Score=66.67  Aligned_cols=45  Identities=24%  Similarity=0.417  Sum_probs=32.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i  273 (383)
                      ||++||-+++|||||+++|.+...     ...-|..+++   ..+  .+||||=.
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~---~~~--~IDTPGEy   47 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEY---YDN--TIDTPGEY   47 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEe---ccc--EEECChhh
Confidence            699999999999999999997542     2234444443   334  39999964

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04117 Rab15 Rab15 subfamily

Probab=97.75  E-value=6.9e-05  Score=65.24  Aligned_cols=54  Identities=19%  Similarity=0.289  Sum_probs=35.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||++++.+.. ......|....+.  ..+.++.   .+.+.||+|--
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~   60 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE   60 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            68999999999999999998654 2222233333222  2333332   46789999963

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=97.74  E-value=0.00013  Score=63.51  Aligned_cols=101  Identities=15%  Similarity=0.113  Sum_probs=64.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED  158 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~D  158 (383)
                      ...+.+||.        ||+ .+........++.+|.++.|+|..++.+..  ++..++        .+.|+++|.||+|
T Consensus        49 ~~~~~l~Dt--------~g~-~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~D  117 (165)
T cd01865          49 RVKLQIWDT--------AGQ-ERYRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCD  117 (165)
T ss_pred             EEEEEEEEC--------CCh-HHHHHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcc
Confidence            355778874        232 334444456789999999999987653322  122221        2568999999999


Q ss_pred             CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      |.+...  ...-.+.....+..++.+|+++|.|+.++.+.+.
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (165)
T cd01865         118 MEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV  159 (165)
T ss_pred             cCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            975432  1111222334567789999999999988755543

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04126 Rab20 Rab20 subfamily

Probab=97.73  E-value=5.4e-05  Score=70.02  Aligned_cols=54  Identities=24%  Similarity=0.393  Sum_probs=35.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||+|++.+.....  ..|-+..+...... ..++.++||||.-
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~~~~~~~~~~l~iwDt~G~e   55 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAFYLKQWGPYNISIWDTAGRE   55 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEEEEEEeeEEEEEEEeCCCcc
Confidence            368999999999999999999765322  22222122222222 2357899999974

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PRK05433 GTP-binding protein LepA; Provisional

Probab=97.73  E-value=0.0002  Score=75.71  Aligned_cols=93  Identities=18%  Similarity=0.217  Sum_probs=63.8

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCC-
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMAD---RNAWATYFAKQGT-  177 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~~~---~~~w~~~l~~~g~-  177 (383)
                      ||| ..+..+....+..+|.+|.|+|+..+....... +..+. .+.|+++|+||+|+.....   ...+.+.   .+. 
T Consensus        82 PGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~---lg~~  157 (600)
T PRK05433         82 PGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDV---IGID  157 (600)
T ss_pred             CCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHH---hCCC
Confidence            676 556677778899999999999998765433322 22222 3789999999999964321   1222222   232 


Q ss_pred             --eEEEeeCcCCCchhhhhHHHHHh
Q 016762          178 --KVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       178 --~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                        .++++|+++|.|+.+|.+.+.+.
T Consensus       158 ~~~vi~iSAktG~GI~~Ll~~I~~~  182 (600)
T PRK05433        158 ASDAVLVSAKTGIGIEEVLEAIVER  182 (600)
T ss_pred             cceEEEEecCCCCCHHHHHHHHHHh
Confidence              48899999999999887776544

>cd01882 BMS1 Bms1

Probab=97.73  E-value=4.6e-05  Score=70.63  Aligned_cols=57  Identities=28%  Similarity=0.438  Sum_probs=39.0

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i  273 (383)
                      ..+..|+++|.||+|||||+|+|.+.. ...++...|+. .+ ....+..+.++||||.+
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~   94 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI   94 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH
Confidence            445679999999999999999998752 22333444531 11 11235678999999965

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.73  E-value=6.1e-05  Score=68.66  Aligned_cols=53  Identities=19%  Similarity=0.355  Sum_probs=36.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-----CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-----~~~i~l~DTpG~i  273 (383)
                      +|.++|.+|||||||+|.|.+...  ....+.++-.......     +..+.|+||||..
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~--~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~   59 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKY--RSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHP   59 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC--CCccCcEeecceEEEeecCCCCceEEEEECCCCH
Confidence            589999999999999999997542  2222333333332222     3568899999975

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=97.72  E-value=0.00011  Score=63.93  Aligned_cols=102  Identities=13%  Similarity=0.118  Sum_probs=64.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH---Hh-cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ---WL-GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~---~l-~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||.        ||+ .+........+..+|.+++|+|+.++.+..+..  +..   +. .+.|+++|.||+|+.
T Consensus        50 ~~~~~i~D~--------~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~  120 (166)
T cd01869          50 TIKLQIWDT--------AGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT  120 (166)
T ss_pred             EEEEEEEEC--------CCc-HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence            345566763        333 344555556789999999999997654332211  111   11 257999999999986


Q ss_pred             CHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          161 SMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       161 ~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .....  +.-.......+..++.+|+++|.|+.++.+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  159 (166)
T cd01869         121 DKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM  159 (166)
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence            54221  11112223456788999999999998875544

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01893 Miro1 Miro1 subfamily

Probab=97.71  E-value=9.6e-05  Score=64.55  Aligned_cols=105  Identities=11%  Similarity=0.009  Sum_probs=65.4

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHH----HhcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~----~l~~k~~ilVlNK~DL  159 (383)
                      .+.++.+||....         ......+...+..+|+++.|+|..++.+..+.  .+..    ...+.|+++|.||+|+
T Consensus        45 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl  115 (166)
T cd01893          45 ERVPTTIVDTSSR---------PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL  115 (166)
T ss_pred             CeEEEEEEeCCCc---------hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence            4566778885322         22233445567899999999998876554431  1211    1236899999999999


Q ss_pred             CCHHHH---HHHHHHH-HHc-C-CeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMADR---NAWATYF-AKQ-G-TKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~~---~~w~~~l-~~~-g-~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+....   ......+ .+. + ..++.+|+++|.|++++.+.+.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  161 (166)
T cd01893         116 RDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQK  161 (166)
T ss_pred             ccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHH
Confidence            764431   1211111 111 1 36888999999999888665543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=97.71  E-value=0.0001  Score=63.24  Aligned_cols=87  Identities=10%  Similarity=-0.030  Sum_probs=56.5

Q ss_pred             HHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCHHH-HHHHHHHHHHcCCeEEEe
Q 016762          111 EKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFS  182 (383)
Q Consensus       111 ~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~~~~~-~~~w~~~l~~~g~~vi~i  182 (383)
                      .......+..+|.++.|+|..+..+..+.     ++.+..  .+.|+++|.||+|+..... ...........+..++.+
T Consensus        63 ~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  142 (162)
T cd04138          63 SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIET  142 (162)
T ss_pred             HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEe
Confidence            33444678899999999998764332221     122221  2679999999999975321 122223334456788999


Q ss_pred             eCcCCCchhhhhHHH
Q 016762          183 NGQLGMGTMKLSRLA  197 (383)
Q Consensus       183 Sa~~g~Gi~~L~~~l  197 (383)
                      |+++|.|+.++.+.+
T Consensus       143 Sa~~~~gi~~l~~~l  157 (162)
T cd04138         143 SAKTRQGVEEAFYTL  157 (162)
T ss_pred             cCCCCCCHHHHHHHH
Confidence            999999998875544

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=97.71  E-value=0.00014  Score=73.58  Aligned_cols=109  Identities=16%  Similarity=0.109  Sum_probs=66.2

Q ss_pred             CCcEEEEcCCCC--CcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC---c-H----HHHHH---hcCCCeEEE
Q 016762           87 DADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT---H-P----LMDQW---LGNRKRILV  153 (383)
Q Consensus        87 ~~~~vi~~~~L~--~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~---~-~----~l~~~---l~~k~~ilV  153 (383)
                      +..+++||..--  ...|.    ..+.....+.+++++++++|+|+.......   + .    ++..+   +.++|.++|
T Consensus       205 ~~~~~laD~PGliega~~~----~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV  280 (424)
T PRK12297        205 GRSFVMADIPGLIEGASEG----VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVV  280 (424)
T ss_pred             CceEEEEECCCCccccccc----chHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEE
Confidence            456788885421  11111    123344556789999999999986431111   1 1    12222   136899999


Q ss_pred             EEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          154 LNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       154 lNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      +||+||....  ..+.......+..++++|++++.|+.+|.+.+.++.
T Consensus       281 ~NK~DL~~~~--e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l  326 (424)
T PRK12297        281 ANKMDLPEAE--ENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELL  326 (424)
T ss_pred             EeCCCCcCCH--HHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999985332  122222233346788999999999999877765543

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.71  E-value=7.9e-05  Score=66.52  Aligned_cols=54  Identities=19%  Similarity=0.312  Sum_probs=36.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~  272 (383)
                      ..+|.++|.+|||||||++++.......  ..|.+..+...+.. +-.+.+.||||-
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~~~~~~~~~~~~~i~D~~Gq   71 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYKNISFTVWDVGGQ   71 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCcceeEEEEEECCEEEEEEECCCC
Confidence            4689999999999999999998543222  23333333333333 345889999995

>TIGR01393 lepA GTP-binding protein LepA

Probab=97.71  E-value=0.0002  Score=75.65  Aligned_cols=104  Identities=16%  Similarity=0.187  Sum_probs=68.6

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHH--
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMA--  163 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l-~~k~~ilVlNK~DL~~~~--  163 (383)
                      ..+.+||.        ||| .++.......+..+|.+++|+|+..+....... +..+. .+.|+++|+||+|+....  
T Consensus        70 ~~l~liDT--------PG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~  140 (595)
T TIGR01393        70 YVLNLIDT--------PGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPE  140 (595)
T ss_pred             EEEEEEEC--------CCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHH
Confidence            44566663        666 556777778899999999999998765443322 22222 367999999999996422  


Q ss_pred             H-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          164 D-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       164 ~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      . ...+.+.+.-....++++|+++|.|+.+|.+.+.+.
T Consensus       141 ~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~  178 (595)
T TIGR01393       141 RVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKR  178 (595)
T ss_pred             HHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHh
Confidence            1 123322221001247899999999999887766543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd00154 Rab Rab family

Probab=97.71  E-value=0.00014  Score=61.60  Aligned_cols=102  Identities=16%  Similarity=0.113  Sum_probs=65.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ..++.+||.        ||+ ..........+..+|+++.|+|+.++.+.... . +..+.    ...|.++++||+|+.
T Consensus        48 ~~~~~l~D~--------~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  118 (159)
T cd00154          48 TVKLQIWDT--------AGQ-ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE  118 (159)
T ss_pred             EEEEEEEec--------CCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence            456677773        443 44445556778999999999999864332211 1 11111    248999999999996


Q ss_pred             -CHH-HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          161 -SMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       161 -~~~-~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                       +.. ......+.....+..++.+|++.+.|+.++.+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  157 (159)
T cd00154         119 DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSL  157 (159)
T ss_pred             ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence             222 2222323334457789999999999998876554

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.71  E-value=9.4e-05  Score=66.03  Aligned_cols=103  Identities=11%  Similarity=0.093  Sum_probs=63.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D  158 (383)
                      .+..+.+||..        |+ .+........+..+|.+++|+|+.++.+..+  .++.+++     .+.|++++.||+|
T Consensus        59 ~~~~~~i~D~~--------Gq-~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~D  129 (181)
T PLN00223         59 KNISFTVWDVG--------GQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD  129 (181)
T ss_pred             CCEEEEEEECC--------CC-HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCC
Confidence            35667788843        22 4445545567899999999999987543221  2333333     2578999999999


Q ss_pred             CCCHHHHHHHHHHHHHcC-----CeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISMADRNAWATYFAKQG-----TKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~~~~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +..........+.+.-..     ..++.+|+++|.|+.++.+.+
T Consensus       130 l~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l  173 (181)
T PLN00223        130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL  173 (181)
T ss_pred             CCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHH
Confidence            865433233222221001     124458999999988875544

>cd01861 Rab6 Rab6 subfamily

Probab=97.71  E-value=0.00013  Score=62.83  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=66.8

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc----CCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l~----~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||.        ||+ .+........+..+|+++.|||..++.+..+.  .+..+..    +.|+++++||+|+..
T Consensus        49 ~~l~~~D~--------~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~  119 (161)
T cd01861          49 VRLQLWDT--------AGQ-ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD  119 (161)
T ss_pred             EEEEEEEC--------CCc-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence            45678874        332 44455566778999999999999765443221  1222221    378999999999953


Q ss_pred             HHH-HHH-HHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          162 MAD-RNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       162 ~~~-~~~-w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ... ... ........+..++.+|++.+.|+.++.+.+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861         120 KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            321 222 22223345677889999999999988766543

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04158 ARD1 ARD1 subfamily

Probab=97.70  E-value=5.6e-05  Score=66.34  Aligned_cols=102  Identities=14%  Similarity=0.117  Sum_probs=62.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHhc-----CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l~-----~k~~ilVlNK~D  158 (383)
                      .+..+.+||..-.         .+........+..+|.+++|+|..++.+..  ...+..++.     +.|+++|.||+|
T Consensus        41 ~~~~i~l~Dt~G~---------~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  111 (169)
T cd04158          41 KNLKFTIWDVGGK---------HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQD  111 (169)
T ss_pred             CCEEEEEEECCCC---------hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcC
Confidence            4566778885322         333444556789999999999987653322  222333332     478999999999


Q ss_pred             CCCH---HHHHHHHHHHHHcC----CeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISM---ADRNAWATYFAKQG----TKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~---~~~~~w~~~l~~~g----~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +...   ++...+.... +.+    ..++.+|+++|.|+.++.+.+
T Consensus       112 l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~g~gv~~~f~~l  156 (169)
T cd04158         112 VAGALSVEEMTELLSLH-KLCCGRSWYIQGCDARSGMGLYEGLDWL  156 (169)
T ss_pred             cccCCCHHHHHHHhCCc-cccCCCcEEEEeCcCCCCCCHHHHHHHH
Confidence            9643   2333332211 111    246678999999998875554

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.70  E-value=0.00026  Score=58.87  Aligned_cols=92  Identities=22%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEeeCcC
Q 016762          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQL  186 (383)
Q Consensus       108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g-~~vi~iSa~~  186 (383)
                      +.....+.-....+|+|+.|..+.+|.+...+.+..... +|.|-|++|+||+...++..-..+++..| ..++.+|+..
T Consensus        52 ~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~-k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d  130 (148)
T COG4917          52 PRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGV-KKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVD  130 (148)
T ss_pred             hHHHHHHHHHhhccceeeeeecccCccccCCcccccccc-cceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccC
Confidence            445555666678999999999999998888887665544 56999999999997776666556677777 4577789999


Q ss_pred             CCchhhhhHHHHHh
Q 016762          187 GMGTMKLSRLAKAL  200 (383)
Q Consensus       187 g~Gi~~L~~~l~~l  200 (383)
                      ..|+++|...+..+
T Consensus       131 ~~gv~~l~~~L~~~  144 (148)
T COG4917         131 NQGVEELVDYLASL  144 (148)
T ss_pred             cccHHHHHHHHHhh
Confidence            99999998877654

>cd01868 Rab11_like Rab11-like

Probab=97.69  E-value=0.00016  Score=62.71  Aligned_cols=102  Identities=13%  Similarity=0.096  Sum_probs=65.1

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh---c-CCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL---G-NRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l---~-~k~~ilVlNK~DL~  160 (383)
                      ...+.+||.        ||+ .+........++.++.++.|+|..++.+..+..  +..+.   . +.|+++|.||+|+.
T Consensus        51 ~~~~~l~D~--------~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~  121 (165)
T cd01868          51 TIKAQIWDT--------AGQ-ERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR  121 (165)
T ss_pred             EEEEEEEeC--------CCh-HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            355778873        222 444455556789999999999998655432211  11111   1 47899999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ....  .+.........+..++.+|++.|.|+.++.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868         122 HLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            5321  122223333456778999999999998875544

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04118 Rab24 Rab24 subfamily

Probab=97.69  E-value=0.00011  Score=65.79  Aligned_cols=105  Identities=11%  Similarity=0.035  Sum_probs=64.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh---cCCCeEEEEEccCCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL---GNRKRILVLNREDMIS  161 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l---~~k~~ilVlNK~DL~~  161 (383)
                      ...+-+||....         ..........+..+|++++|+|..++.+..+.  .+..+.   .+.|+++|.||+|+.+
T Consensus        49 ~~~l~i~D~~G~---------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  119 (193)
T cd04118          49 VVTLGIWDTAGS---------ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE  119 (193)
T ss_pred             EEEEEEEECCCc---------hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence            345667874332         22233333567899999999998765443221  122221   2579999999999864


Q ss_pred             HHH------HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          162 MAD------RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       162 ~~~------~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ...      ......+....+..++.+|+++|.|+.+|.+.+.+.
T Consensus       120 ~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~  164 (193)
T cd04118         120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAED  164 (193)
T ss_pred             cccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            321      111222233446778899999999999887666543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=97.69  E-value=0.00022  Score=61.66  Aligned_cols=103  Identities=10%  Similarity=-0.108  Sum_probs=64.1

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~D  158 (383)
                      ....+.+||..-   |      .+........+..+|.++.|||+.++.+....     .+.+..  .+.|+++|.||+|
T Consensus        46 ~~~~l~i~Dt~g---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~D  116 (164)
T smart00173       46 EVCLLDILDTAG---Q------EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCD  116 (164)
T ss_pred             EEEEEEEEECCC---c------ccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            345666787432   2      33333444668899999999999875443221     111111  2579999999999


Q ss_pred             CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +.+...  ...-.......+..++.+|+++|.|+.++.+.+
T Consensus       117 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  157 (164)
T smart00173      117 LESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL  157 (164)
T ss_pred             ccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHH
Confidence            975321  111112233446778999999999999885544

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04109 Rab28 Rab28 subfamily

Probab=97.69  E-value=0.00014  Score=66.58  Aligned_cols=104  Identities=18%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc----CCCeEEEEEcc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG----NRKRILVLNRE  157 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~----~k~~ilVlNK~  157 (383)
                      ...+.+||..        |+ ..........+..+|+|++|+|..++.+..+..     +.+...    +.|+++|.||+
T Consensus        49 ~~~~~i~Dt~--------G~-~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~  119 (215)
T cd04109          49 NVTLQVWDIG--------GQ-SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKT  119 (215)
T ss_pred             EEEEEEEECC--------Cc-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECc
Confidence            4567788753        22 344444556789999999999998765543321     112211    23688999999


Q ss_pred             CCCCHHH-H-HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          158 DMISMAD-R-NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       158 DL~~~~~-~-~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ||..... . .......+..+...+++|+++|.|+.++.+.+.+
T Consensus       120 DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~  163 (215)
T cd04109         120 DLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAA  163 (215)
T ss_pred             ccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            9974321 1 1111222344667889999999999988655443

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.68  E-value=4.2e-05  Score=63.58  Aligned_cols=52  Identities=27%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             EeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-----CCcEEEEecCcccc
Q 016762          222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGIIP  274 (383)
Q Consensus       222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-----~~~i~l~DTpG~i~  274 (383)
                      ++|.+|+|||||+|+|.+.... ......+..+......     +..+.++||||...
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~   57 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER   57 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHH
Confidence            5899999999999999976532 1111111122222121     34688999999764

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.68  E-value=0.00011  Score=67.75  Aligned_cols=58  Identities=21%  Similarity=0.172  Sum_probs=39.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      ..++|++||.+|||||||++++..... ....+..|++.....+..+   -.+.++||+|--
T Consensus        12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~   73 (219)
T PLN03071         12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (219)
T ss_pred             CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence            457899999999999999999864431 2234455555443333332   257899999974

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.68  E-value=0.00011  Score=64.91  Aligned_cols=54  Identities=22%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE-EE-EEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~-~~-~~~~~~---~i~l~DTpG~i  273 (383)
                      .+|+++|.+|||||||++++.+... . ....-|+.+ .. .+.++.   .+.++||||..
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   61 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSF-P-DYHDPTIEDAYKQQARIDNEPALLDILDTAGQA   61 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC-C-CCcCCcccceEEEEEEECCEEEEEEEEeCCCch
Confidence            5799999999999999999986542 1 111112211 11 223332   46789999974

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04126 Rab20 Rab20 subfamily

Probab=97.68  E-value=0.00013  Score=67.39  Aligned_cols=103  Identities=14%  Similarity=0.024  Sum_probs=64.0

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ..++.+||....         ..........+..+|++|+|||..++.+..+..  +..+.    .+.|+++|.||+||.
T Consensus        43 ~~~l~iwDt~G~---------e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~  113 (220)
T cd04126          43 PYNISIWDTAGR---------EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT  113 (220)
T ss_pred             EEEEEEEeCCCc---------ccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            456788886433         222333345688999999999998765544321  22222    246899999999997


Q ss_pred             C------------------------HHHHHHHHHHHHHc-----------CCeEEEeeCcCCCchhhhhHHHH
Q 016762          161 S------------------------MADRNAWATYFAKQ-----------GTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       161 ~------------------------~~~~~~w~~~l~~~-----------g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      .                        .++...|.+.+...           +..++++|+++|.|+.++...+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~  186 (220)
T cd04126         114 EEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF  186 (220)
T ss_pred             cccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence            5                        12233333322111           14578899999999988754443

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=97.68  E-value=6.7e-05  Score=79.45  Aligned_cols=54  Identities=26%  Similarity=0.452  Sum_probs=41.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC--ccccCCCCCceeEEEEEEe----CCcEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~  272 (383)
                      .|+++|.+|+|||||+|+|+|.+  ....+...|.|.+......    +..+.++||||.
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh   61 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH   61 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence            48999999999999999999753  2233455799988764433    345789999996

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.68  E-value=7.4e-05  Score=65.51  Aligned_cols=103  Identities=12%  Similarity=-0.004  Sum_probs=64.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMIS  161 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~~k~~ilVlNK~DL~~  161 (383)
                      ..++.+||....         .+........+..+|.++.|+|..++.+..+.     ++.....+.|+++|.||+|+..
T Consensus        48 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~  118 (166)
T cd00877          48 KIRFNVWDTAGQ---------EKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD  118 (166)
T ss_pred             EEEEEEEECCCC---------hhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc
Confidence            456778886432         22222223457889999999999866544322     1222222689999999999974


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       162 ~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ......-.+.....+..++.+|+++|.|+.++.+.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  155 (166)
T cd00877         119 RKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA  155 (166)
T ss_pred             ccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence            3321111122334456789999999999988865543

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.67  E-value=5.9e-05  Score=65.89  Aligned_cols=31  Identities=42%  Similarity=0.608  Sum_probs=25.6

Q ss_pred             EeEeecCCCChhHHHHhhhcCCccccCCCCC
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPG  250 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg  250 (383)
                      |+++|-.++|||||||+|+|.....++..|.
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~   31 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPC   31 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSST
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCccccccc
Confidence            6899999999999999999987666666543

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04136 Rap_like Rap-like subfamily

Probab=97.67  E-value=0.00013  Score=62.92  Aligned_cols=103  Identities=12%  Similarity=-0.075  Sum_probs=63.3

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D  158 (383)
                      ....+.+||...   |      +++.......+..+|.++.|||..++.+..+..  +..+.     .+.|+++|.||+|
T Consensus        47 ~~~~l~i~Dt~G---~------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  117 (163)
T cd04136          47 QQCMLEILDTAG---T------EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCD  117 (163)
T ss_pred             EEEEEEEEECCC---c------cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            345566787532   2      333333345688999999999987654432211  11111     2579999999999


Q ss_pred             CCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +.+....  ..-....++.+..++.+|++.|.|+.++.+.+
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04136         118 LEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADL  158 (163)
T ss_pred             ccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9753221  11111223345678899999999998876554

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=97.67  E-value=0.00019  Score=61.70  Aligned_cols=103  Identities=16%  Similarity=0.022  Sum_probs=66.5

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      ...+.+||.        ||+ ..........+..+|.++.++|..++.+..+  ..+..+.     .+.|+++|+||+|+
T Consensus        47 ~~~~~i~D~--------~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~  117 (164)
T cd04139          47 DVQLNILDT--------AGQ-EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDL  117 (164)
T ss_pred             EEEEEEEEC--------CCh-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccc
Confidence            455677773        332 3344444567899999999999876543211  1222222     36899999999999


Q ss_pred             CCHH--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          160 ISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       160 ~~~~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ....  ............+..++.+|+++|.|+.++.+.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139         118 EDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             ccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence            7621  22222233344567899999999999998866554

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01866 Rab2 Rab2 subfamily

Probab=97.66  E-value=0.0002  Score=62.61  Aligned_cols=100  Identities=14%  Similarity=0.177  Sum_probs=65.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED  158 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~D  158 (383)
                      ...+.+||.        ||+ .++.......++.+|.+++++|+.++.+..+  +..++        .+.|+++|.||+|
T Consensus        52 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pvivv~nK~D  120 (168)
T cd01866          52 QIKLQIWDT--------AGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNH--LTSWLEDARQHSNSNMTIMLIGNKCD  120 (168)
T ss_pred             EEEEEEEEC--------CCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCcEEEEEECcc
Confidence            356778874        332 4444555677899999999999986544322  22222        2578999999999


Q ss_pred             CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +.....  ...-..+..+.+..++++|++.+.|+.++...+
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866         121 LESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            974321  122223344567788999999999998875433

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.66  E-value=8.4e-05  Score=65.39  Aligned_cols=54  Identities=22%  Similarity=0.132  Sum_probs=37.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i  273 (383)
                      ++++++|.+|||||||++++.+..  .....+.|+.+...  +.++.   .+.++||||.-
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   59 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD   59 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCCh
Confidence            368999999999999999998643  33444555544322  22332   46789999974

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PRK11058 GTPase HflX; Provisional

Probab=97.66  E-value=0.0005  Score=69.79  Aligned_cols=85  Identities=14%  Similarity=0.147  Sum_probs=56.5

Q ss_pred             HHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH---h--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCe-EEEeeCc
Q 016762          113 ELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW---L--GNRKRILVLNREDMISMADRNAWATYFAKQGTK-VIFSNGQ  185 (383)
Q Consensus       113 ~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~---l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~-vi~iSa~  185 (383)
                      ...+.+..+|++|.|+|+.++....+.. +..+   +  .++|+++|+||+|+.+.....  ... ...+.. ++++|++
T Consensus       269 ~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~-~~~~~~~~v~ISAk  345 (426)
T PRK11058        269 ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDR-DEENKPIRVWLSAQ  345 (426)
T ss_pred             HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHH-HhcCCCceEEEeCC
Confidence            3446688999999999998875544321 1122   2  268999999999997542211  111 123433 4789999


Q ss_pred             CCCchhhhhHHHHHh
Q 016762          186 LGMGTMKLSRLAKAL  200 (383)
Q Consensus       186 ~g~Gi~~L~~~l~~l  200 (383)
                      +|.|+.+|.+.+.+.
T Consensus       346 tG~GIdeL~e~I~~~  360 (426)
T PRK11058        346 TGAGIPLLFQALTER  360 (426)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999987776554

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=97.66  E-value=8.9e-05  Score=67.60  Aligned_cols=56  Identities=21%  Similarity=0.210  Sum_probs=37.1

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCC-ceeEEEEEEeCC----cEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKWVRFGK----DLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-tT~~~~~~~~~~----~i~l~DTpG~i~  274 (383)
                      .+|+++|-.|||||||+|+|.+..... +..|. .+..........    .+.++||+|...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~   66 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPE-GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE   66 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcc-cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH
Confidence            689999999999999999999754322 22222 223333322222    378899999853

>cd04169 RF3 RF3 subfamily

Probab=97.66  E-value=7.8e-05  Score=70.98  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.0

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +|+++|.+|+|||||+|+|+..
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~   25 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLF   25 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            5999999999999999999853

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04123 Rab21 Rab21 subfamily

Probab=97.66  E-value=0.00021  Score=61.30  Aligned_cols=102  Identities=21%  Similarity=0.148  Sum_probs=65.0

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~-~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||.        ||+ ..........+..+|.+++|+|..++.+....     ++..... +.|+++|+||+|+..
T Consensus        49 ~~~~~~D~--------~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~  119 (162)
T cd04123          49 IDLAIWDT--------AGQ-ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER  119 (162)
T ss_pred             EEEEEEEC--------Cch-HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence            45677873        222 23333334567889999999998765432211     1222222 578999999999975


Q ss_pred             HHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       162 ~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ...  .....++....+..++++|++++.|+.++.+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~  158 (162)
T cd04123         120 QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA  158 (162)
T ss_pred             ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            332  2233334445577889999999999988866553

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01892 Miro2 Miro2 subfamily

Probab=97.65  E-value=0.00014  Score=64.05  Aligned_cols=57  Identities=16%  Similarity=0.092  Sum_probs=37.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE---EEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~---~~~~~~~~---~i~l~DTpG~i  273 (383)
                      +..+|.++|.+|||||||+|++.+.. ..+.....|+..   ...+.++.   .+.+.||+|--
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~   65 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE   65 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc
Confidence            45789999999999999999999754 222333344322   22333332   35678999864

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN03118 Rab family protein; Provisional

Probab=97.64  E-value=0.00027  Score=64.49  Aligned_cols=105  Identities=13%  Similarity=0.054  Sum_probs=66.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh------cCCCeEEEEEcc
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL------GNRKRILVLNRE  157 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l------~~k~~ilVlNK~  157 (383)
                      ....+.+||..        |+ .++.......++.+|.+++|+|..++.+..+..  +...+      .+.|.++|.||+
T Consensus        60 ~~~~l~l~Dt~--------G~-~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~  130 (211)
T PLN03118         60 KRLKLTIWDTA--------GQ-ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV  130 (211)
T ss_pred             EEEEEEEEECC--------Cc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            34567788842        22 444444556789999999999997654433321  11111      245889999999


Q ss_pred             CCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       158 DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      |+......  ..........+..++.+|++.|.|+.++.+.+..
T Consensus       131 Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~  174 (211)
T PLN03118        131 DRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELAL  174 (211)
T ss_pred             cccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99753321  2222333445677889999999999988655543

>PRK04213 GTP-binding protein; Provisional

Probab=97.64  E-value=0.0011  Score=59.78  Aligned_cols=110  Identities=14%  Similarity=0.020  Sum_probs=62.8

Q ss_pred             cEEEEcCCCCC--cCCCchHHHHHHHHHHHH----hhhcCeEEEEEecCCCCCC-----------CcHHHHHHh--cCCC
Q 016762           89 DLYYWTKSLRP--VQWYPGHIAKTEKELKDQ----LKLMDVVIEVRDARIPLST-----------THPLMDQWL--GNRK  149 (383)
Q Consensus        89 ~~vi~~~~L~~--~qw~Pgh~~~~~~~l~~~----idr~DlILeV~DaR~p~~~-----------~~~~l~~~l--~~k~  149 (383)
                      ++.+||...-.  ..+-+.+..++...+...    ++.+|+++.|+|+......           .+.++...+  .+.|
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p  132 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP  132 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence            57888854310  011122234444443333    4567899999998643211           012223332  3789


Q ss_pred             eEEEEEccCCCCHH--HHHHHHHHHHHc------CCeEEEeeCcCCCchhhhhHHHHH
Q 016762          150 RILVLNREDMISMA--DRNAWATYFAKQ------GTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       150 ~ilVlNK~DL~~~~--~~~~w~~~l~~~------g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +++|+||+|+....  ....+.+.+.-.      +..++.+|+++| |+.++.+.+.+
T Consensus       133 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~  189 (201)
T PRK04213        133 PIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRK  189 (201)
T ss_pred             eEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHH
Confidence            99999999997644  233333332210      124789999999 99988666544

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.63  E-value=0.0002  Score=72.74  Aligned_cols=97  Identities=18%  Similarity=0.193  Sum_probs=63.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH------HHHHhcCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~------l~~~l~~k~~ilVlNK~DL~  160 (383)
                      +..+.+||.        ||| +++.+.+...+..+|++++|+|+..+......+      +.......++++++||+|+.
T Consensus        84 ~~~i~iiDt--------pGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~  154 (426)
T TIGR00483        84 KYEVTIVDC--------PGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSV  154 (426)
T ss_pred             CeEEEEEEC--------CCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhcc
Confidence            345666663        676 556666666678999999999998874332222      22223345788999999997


Q ss_pred             C--HHH----HHHHHHHHHHcC-----CeEEEeeCcCCCchhh
Q 016762          161 S--MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (383)
Q Consensus       161 ~--~~~----~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~  192 (383)
                      +  .+.    ..++.+++...+     ..++++|+++|.|+.+
T Consensus       155 ~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       155 NYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             CccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            4  322    223334444444     4678999999999875

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04175 Rap1 Rap1 subgroup

Probab=97.63  E-value=0.00012  Score=63.45  Aligned_cols=103  Identities=11%  Similarity=-0.060  Sum_probs=64.2

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D  158 (383)
                      ....+.+||..-   |      .++.......+..+|.++.|+|..++.+..+..  +..+.     .+.|+++|.||+|
T Consensus        47 ~~~~l~i~Dt~G---~------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  117 (164)
T cd04175          47 QQCMLEILDTAG---T------EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD  117 (164)
T ss_pred             EEEEEEEEECCC---c------ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence            345566788522   2      334444446789999999999987654432211  12221     2579999999999


Q ss_pred             CCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +......  ..-....++.+..++.+|+++|.|+.++...+
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l  158 (164)
T cd04175         118 LEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL  158 (164)
T ss_pred             chhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            9643211  11112223456788999999999998875544

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.62  E-value=0.00028  Score=72.60  Aligned_cols=90  Identities=16%  Similarity=0.248  Sum_probs=59.9

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc---HHHHHHhcCCCeEEEEEccCCCCH--HHHHHHHH----HHHH
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWLGNRKRILVLNREDMISM--ADRNAWAT----YFAK  174 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~---~~l~~~l~~k~~ilVlNK~DL~~~--~~~~~w~~----~l~~  174 (383)
                      ||| .++.+.+...+..+|+++.|+|+..+.....   ..+...++.++.++++||+|++..  +......+    ++..
T Consensus       115 PGh-~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~  193 (474)
T PRK05124        115 PGH-EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQ  193 (474)
T ss_pred             CCc-HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHh
Confidence            787 4566666656899999999999987654432   233444445678899999999842  21222222    2222


Q ss_pred             cC----CeEEEeeCcCCCchhhhh
Q 016762          175 QG----TKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       175 ~g----~~vi~iSa~~g~Gi~~L~  194 (383)
                      .+    ..++++|+++|.|+..+.
T Consensus       194 ~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        194 LPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             cCCCCCceEEEEEeecCCCccccc
Confidence            22    568999999999987653

>PRK12736 elongation factor Tu; Reviewed

Probab=97.62  E-value=0.00049  Score=69.21  Aligned_cols=83  Identities=18%  Similarity=0.087  Sum_probs=55.1

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH-----HHHHHHHHc
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAKQ  175 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~-----~w~~~l~~~  175 (383)
                      ||| +++.+.+..-+..+|+++.|+|+..+......+...++  .+.| .++++||+|+++.++..     +..+++...
T Consensus        83 PGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~  161 (394)
T PRK12736         83 PGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence            887 45666666667899999999999876544443333333  2567 56889999998544322     222333334


Q ss_pred             C-----CeEEEeeCcCC
Q 016762          176 G-----TKVIFSNGQLG  187 (383)
Q Consensus       176 g-----~~vi~iSa~~g  187 (383)
                      +     ..++++|+.+|
T Consensus       162 ~~~~~~~~ii~vSa~~g  178 (394)
T PRK12736        162 DFPGDDIPVIRGSALKA  178 (394)
T ss_pred             CCCcCCccEEEeecccc
Confidence            4     36889999987

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.61  E-value=9.7e-05  Score=64.67  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=33.5

Q ss_pred             EeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      |.++|.+|||||||+|++.+.... ...+..|.  +...+.. +..+.+.||||--
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~--~~~~i~~~~~~l~i~Dt~G~~   55 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF--NSVAIPTQDAIMELLEIGGSQ   55 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCc--ceEEEeeCCeEEEEEECCCCc
Confidence            789999999999999999965321 11122222  2112222 3457899999964

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01892 Miro2 Miro2 subfamily

Probab=97.61  E-value=4.9e-05  Score=66.90  Aligned_cols=84  Identities=19%  Similarity=0.144  Sum_probs=53.3

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcH-HHHHHh---cCCCeEEEEEccCCCCHHHH--HHHHHHHHHcCC-eEEEeeCcCCC
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGT-KVIFSNGQLGM  188 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~-~l~~~l---~~k~~ilVlNK~DL~~~~~~--~~w~~~l~~~g~-~vi~iSa~~g~  188 (383)
                      ..++.+|++++|+|+.++.+.... ++...+   .+.|+++|.||+|+.+....  ....++.+..+. .++.+|++.|.
T Consensus        73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (169)
T cd01892          73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD  152 (169)
T ss_pred             hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence            457999999999999765332221 222222   25799999999999654321  111122233343 45889999999


Q ss_pred             chhhhhHHHHH
Q 016762          189 GTMKLSRLAKA  199 (383)
Q Consensus       189 Gi~~L~~~l~~  199 (383)
                      |+.++.+.+.+
T Consensus       153 ~v~~lf~~l~~  163 (169)
T cd01892         153 SSNELFTKLAT  163 (169)
T ss_pred             cHHHHHHHHHH
Confidence            99887665544

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.61  E-value=0.00017  Score=63.11  Aligned_cols=103  Identities=13%  Similarity=-0.054  Sum_probs=61.8

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh---cCCCeEEEEEccCC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL---GNRKRILVLNREDM  159 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l---~~k~~ilVlNK~DL  159 (383)
                      ..+..+.+||....         .++.......++.+|.+++|+|+.++.+...  ..+..+.   .+.|+++|.||+|+
T Consensus        41 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl  111 (164)
T cd04162          41 TQDAIMELLEIGGS---------QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDL  111 (164)
T ss_pred             eCCeEEEEEECCCC---------cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCC
Confidence            34567788885322         2333344467999999999999877543221  2233333   36899999999998


Q ss_pred             CCHHHHHHHHHH-----H-HHcCCeEEEeeCcC------CCchhhhhHH
Q 016762          160 ISMADRNAWATY-----F-AKQGTKVIFSNGQL------GMGTMKLSRL  196 (383)
Q Consensus       160 ~~~~~~~~w~~~-----l-~~~g~~vi~iSa~~------g~Gi~~L~~~  196 (383)
                      ..........+.     + .+.+..++.+|++.      +.|+.++-+.
T Consensus       112 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~  160 (164)
T cd04162         112 PAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQ  160 (164)
T ss_pred             cCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence            654332221111     2 22345566677776      7777665443

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.61  E-value=0.00034  Score=62.62  Aligned_cols=105  Identities=14%  Similarity=0.074  Sum_probs=66.4

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH----HHhcCCCeEEEEEc
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNR  156 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~----~~l~~k~~ilVlNK  156 (383)
                      +......+-+||..-+         +.........+..+|.++.|+|..++.+..+.  .+.    +...+.|+++|.||
T Consensus        48 ~~~~~~~l~iwDtaG~---------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK  118 (182)
T cd04172          48 IDTQRIELSLWDTSGS---------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK  118 (182)
T ss_pred             ECCEEEEEEEEECCCc---------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEC
Confidence            3445577889986433         33333334568999999999998776554432  111    11236799999999


Q ss_pred             cCCCCH-----------H---HHHHHHHHHHHcCC-eEEEeeCcCCCc-hhhhhHH
Q 016762          157 EDMISM-----------A---DRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRL  196 (383)
Q Consensus       157 ~DL~~~-----------~---~~~~w~~~l~~~g~-~vi~iSa~~g~G-i~~L~~~  196 (383)
                      +||...           .   ..++..++-++.|. .++.+|+++|.| +.++-..
T Consensus       119 ~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~  174 (182)
T cd04172         119 SDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV  174 (182)
T ss_pred             hhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence            998531           0   01122233345564 788999999998 8877443

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.60  E-value=0.00014  Score=63.29  Aligned_cols=84  Identities=14%  Similarity=0.072  Sum_probs=53.5

Q ss_pred             HHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh---cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEee
Q 016762          114 LKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL---GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN  183 (383)
Q Consensus       114 l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l---~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iS  183 (383)
                      ....+..+|+++.++|+.++.+..+.     .+....   .+.|+++|.||+|+.....  ........+..+..++.+|
T Consensus        65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  144 (165)
T cd04146          65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVS  144 (165)
T ss_pred             HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeC
Confidence            34568899999999999876443321     122222   2688999999999864321  1112222334567788899


Q ss_pred             CcCC-CchhhhhHHH
Q 016762          184 GQLG-MGTMKLSRLA  197 (383)
Q Consensus       184 a~~g-~Gi~~L~~~l  197 (383)
                      +++| .|+.++.+.+
T Consensus       145 a~~~~~~v~~~f~~l  159 (165)
T cd04146         145 AAEDYDGVHSVFHEL  159 (165)
T ss_pred             CCCCchhHHHHHHHH
Confidence            9998 4887775443

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>COG0218 Predicted GTPase [General function prediction only]

Probab=97.60  E-value=0.00091  Score=60.28  Aligned_cols=95  Identities=21%  Similarity=0.170  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhh-hc--CeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHHH-cC---
Q 016762          106 HIAKTEKELKDQLK-LM--DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-QG---  176 (383)
Q Consensus       106 h~~~~~~~l~~~id-r~--DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l~~-~g---  176 (383)
                      +.+...+.+.+++. |.  ..++.++|+|.+....+.++.+++.  +.|.++|+||+|.++..+...-.....+ .+   
T Consensus        89 ~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~  168 (200)
T COG0218          89 VKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP  168 (200)
T ss_pred             HHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence            34555556667763 34  4577888999999998888888775  7899999999999998665443333331 11   


Q ss_pred             -Ce--EEEeeCcCCCchhhhhHHHHHh
Q 016762          177 -TK--VIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       177 -~~--vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                       ..  ++++|+..+.|+++|++.+.+.
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~  195 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEW  195 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHH
Confidence             22  7788999999999888776654

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.60  E-value=0.0002  Score=62.65  Aligned_cols=104  Identities=14%  Similarity=0.054  Sum_probs=63.3

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~----~l~~k~~ilVlNK~DL  159 (383)
                      ....+.+||..-.         ..........++.+|+++.++|..++.+..+..  +..    ...+.|+++|.||+|+
T Consensus        44 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  114 (174)
T smart00174       44 KPVELGLWDTAGQ---------EDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDL  114 (174)
T ss_pred             EEEEEEEEECCCC---------cccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhh
Confidence            4456788885332         122222234578999999999988764443221  111    1237899999999999


Q ss_pred             CCHHH-H-------------HHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762          160 ISMAD-R-------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       160 ~~~~~-~-------------~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      .+... .             ..-.+..+..+. .++.+|+++|.|+.++.+.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~  168 (174)
T smart00174      115 REDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAI  168 (174)
T ss_pred             hhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHH
Confidence            65321 0             011112233453 788899999999988755543

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04140 ARHI_like ARHI subfamily

Probab=97.59  E-value=0.00017  Score=62.88  Aligned_cols=106  Identities=11%  Similarity=-0.074  Sum_probs=65.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H----HHHHh----cCCCeEEEEEc
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL----GNRKRILVLNR  156 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~----l~~~l----~~k~~ilVlNK  156 (383)
                      ....+.+||..-..         +........+..+|.++.|+|..++.+..+. .    +.+..    .+.|+++|.||
T Consensus        47 ~~~~l~i~Dt~G~~---------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK  117 (165)
T cd04140          47 NICTLQITDTTGSH---------QFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNK  117 (165)
T ss_pred             EEEEEEEEECCCCC---------cchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEC
Confidence            34567788854321         2222223457889999999998876543321 1    22221    25799999999


Q ss_pred             cCCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          157 EDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       157 ~DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +|+.+..+.  ..-..+....+..++.+|+++|.|+.++.+.+-++
T Consensus       118 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         118 CDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             ccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence            999753221  11112223345678899999999998886665443

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04142 RRP22 RRP22 subfamily

Probab=97.59  E-value=0.00051  Score=62.30  Aligned_cols=111  Identities=14%  Similarity=-0.046  Sum_probs=63.9

Q ss_pred             cCCCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh----cCCCeEEEE
Q 016762           85 DLDADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVL  154 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh-~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l----~~k~~ilVl  154 (383)
                      +...++.+||.....  -|++. -..........++.+|++++|+|..++.+.....     +.+..    .+.|+++|.
T Consensus        46 ~~~~~l~i~Dt~G~~--~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivg  123 (198)
T cd04142          46 GRVYDLHILDVPNMQ--RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVG  123 (198)
T ss_pred             CEEEEEEEEeCCCcc--cCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            334567788864321  11110 1111222334578999999999998765443221     11111    357999999


Q ss_pred             EccCCCCHHHHHHH-HHH-HH-HcCCeEEEeeCcCCCchhhhhHHH
Q 016762          155 NREDMISMADRNAW-ATY-FA-KQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       155 NK~DL~~~~~~~~w-~~~-l~-~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ||+|+...+..... ... .. ..+..++++|+++|.|+.+|.+.+
T Consensus       124 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i  169 (198)
T cd04142         124 NKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKEL  169 (198)
T ss_pred             ECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHH
Confidence            99999653211111 111 12 235678999999999998875443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.59  E-value=0.00019  Score=63.43  Aligned_cols=104  Identities=12%  Similarity=-0.083  Sum_probs=66.5

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNR  156 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK  156 (383)
                      ......+.+||..-   |      .++.......+..+|.++.|+|..++.+..+..     +.+..  .+.|+++|.||
T Consensus        46 ~~~~~~l~i~Dt~G---~------~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK  116 (172)
T cd04141          46 DNEPALLDILDTAG---Q------AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNK  116 (172)
T ss_pred             CCEEEEEEEEeCCC---c------hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            34446677888422   2      334444446788999999999998776654432     22221  25799999999


Q ss_pred             cCCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHH
Q 016762          157 EDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       157 ~DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +|+.....+  ..-.+..++.+..++.+|++.|.|+.++-+.
T Consensus       117 ~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~  158 (172)
T cd04141         117 VDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHG  158 (172)
T ss_pred             hhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence            998543211  1111222345678889999999999877443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04144 Ras2 Ras2 subfamily

Probab=97.58  E-value=0.00031  Score=62.98  Aligned_cols=103  Identities=11%  Similarity=-0.000  Sum_probs=63.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHH---h----cCCCeEEEEEcc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQW---L----GNRKRILVLNRE  157 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~---l----~~k~~ilVlNK~  157 (383)
                      ...+.+||..        |+ .+........+..+|+++.|||..++.+..+. . +..+   .    .+.|+++|.||+
T Consensus        46 ~~~l~i~Dt~--------G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~  116 (190)
T cd04144          46 PCMLEVLDTA--------GQ-EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKC  116 (190)
T ss_pred             EEEEEEEECC--------Cc-hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEECh
Confidence            3456778753        22 33444444678999999999998765443221 1 1111   1    247899999999


Q ss_pred             CCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       158 DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      |+......  ..-.+.....+..++.+|+++|.|+.++.+.+.
T Consensus       117 Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144         117 DKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             hccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99642221  111122234467789999999999988755443

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.58  E-value=0.00013  Score=65.15  Aligned_cols=104  Identities=10%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHhc-----CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l~-----~k~~ilVlNK~D  158 (383)
                      .+..+.+||..        |+ .+........++.+|++++|+|+.++.+..  ..++.+.+.     +.|+++|.||.|
T Consensus        59 ~~~~~~l~D~~--------G~-~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D  129 (182)
T PTZ00133         59 KNLKFTMWDVG--------GQ-DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQD  129 (182)
T ss_pred             CCEEEEEEECC--------CC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCC
Confidence            45667888853        32 444555557799999999999987643221  223333332     478999999999


Q ss_pred             CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +..........+.+.     .....++.+|+++|.|+.++.+.+.
T Consensus       130 l~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~  174 (182)
T PTZ00133        130 LPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS  174 (182)
T ss_pred             CCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence            864322122222221     1111344679999999988865543

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.58  E-value=4.3e-05  Score=68.50  Aligned_cols=57  Identities=23%  Similarity=0.413  Sum_probs=39.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccc-----------------cCCCCCceeEEEEEE-----eCCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-----------------AAPRPGVTRVLKWVR-----FGKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~-----------------v~~~pgtT~~~~~~~-----~~~~i~l~DTpG~i  273 (383)
                      .++|+++|..++|||||+++|++.....                 .+...|.|.+.....     -+..+.++||||..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3579999999999999999998543211                 111246666643333     24578999999974

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=97.58  E-value=0.00028  Score=71.63  Aligned_cols=98  Identities=16%  Similarity=0.102  Sum_probs=61.0

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCC--CCCCCcHHHHHH---hcCCCeEEEEEccCCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI--PLSTTHPLMDQW---LGNRKRILVLNREDMIS  161 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~--p~~~~~~~l~~~---l~~k~~ilVlNK~DL~~  161 (383)
                      +..+.+||.        ||| +++.+.+...+..+|++++|+|+.+  +......+...+   ....++++++||+|+..
T Consensus        83 ~~~i~liDt--------pG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~  153 (425)
T PRK12317         83 KYYFTIVDC--------PGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN  153 (425)
T ss_pred             CeEEEEEEC--------CCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence            445566663        665 4555555556789999999999987  333322222222   22346889999999975


Q ss_pred             H--HHH----HHHHHHHHHcC-----CeEEEeeCcCCCchhhh
Q 016762          162 M--ADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       162 ~--~~~----~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L  193 (383)
                      .  +..    ....+.+...|     ..++++|+++|.|+.++
T Consensus       154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence            2  111    12223333344     35889999999998764

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=97.57  E-value=0.00014  Score=64.90  Aligned_cols=102  Identities=14%  Similarity=0.072  Sum_probs=64.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||..        |+ .+........++.+|.+++|+|+.++....  ...+..++     .+.|+++|+||+|+
T Consensus        60 ~~~~~~~D~~--------G~-~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl  130 (184)
T smart00178       60 NIKFTTFDLG--------GH-QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA  130 (184)
T ss_pred             CEEEEEEECC--------CC-HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence            4567778742        32 333444457789999999999998763321  22333333     36899999999998


Q ss_pred             C---CHHHHHHHHHHHHH---------cCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 I---SMADRNAWATYFAK---------QGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~---~~~~~~~w~~~l~~---------~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .   +.+++.........         .-..++.+|+++|.|++++.+.+
T Consensus       131 ~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl  180 (184)
T smart00178      131 PYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL  180 (184)
T ss_pred             cCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence            5   34444333221110         11357889999999998876554

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04134 Rho3 Rho3 subfamily

Probab=97.57  E-value=0.00018  Score=64.41  Aligned_cols=54  Identities=20%  Similarity=0.264  Sum_probs=33.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE-EEEEEeC---CcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~-~~~~~~~---~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||++++.+.... -...|....+ ...+.++   ..+.+.||+|--
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~   59 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQE   59 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeEEEEEECCEEEEEEEEECCCCh
Confidence            6899999999999999999865421 1111221111 1122232   246789999963

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.56  E-value=0.00046  Score=73.62  Aligned_cols=88  Identities=23%  Similarity=0.319  Sum_probs=59.0

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH---HHhcCCCeEEEEEccCCCC--HHHHHH----HHHHHHH
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD---QWLGNRKRILVLNREDMIS--MADRNA----WATYFAK  174 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~---~~l~~k~~ilVlNK~DL~~--~~~~~~----w~~~l~~  174 (383)
                      ||| +++.+.+...+..+|++++|+|+..+......+..   ..+..+++++++||+|+++  .+....    ..+++.+
T Consensus       112 PG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~  190 (632)
T PRK05506        112 PGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAK  190 (632)
T ss_pred             CCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHH
Confidence            787 45666666678999999999999877655433322   2233467888999999985  222222    2222334


Q ss_pred             cC---CeEEEeeCcCCCchhh
Q 016762          175 QG---TKVIFSNGQLGMGTMK  192 (383)
Q Consensus       175 ~g---~~vi~iSa~~g~Gi~~  192 (383)
                      .+   ..++++|+++|.|+.+
T Consensus       191 ~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        191 LGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             cCCCCccEEEEecccCCCccc
Confidence            44   3488999999999874

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.55  E-value=0.00013  Score=74.17  Aligned_cols=57  Identities=23%  Similarity=0.363  Sum_probs=41.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccc------------------------------cCCCCCceeEEEEEEe---CC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK  262 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~------------------------------v~~~pgtT~~~~~~~~---~~  262 (383)
                      ..++|+++|.+|+|||||+++|+......                              .+...|+|.+.....+   +.
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~   85 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY   85 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence            45789999999999999999998421110                              1124589999866555   34


Q ss_pred             cEEEEecCcc
Q 016762          263 DLEFLDSPGI  272 (383)
Q Consensus       263 ~i~l~DTpG~  272 (383)
                      .+.++||||.
T Consensus        86 ~i~iiDtpGh   95 (426)
T TIGR00483        86 EVTIVDCPGH   95 (426)
T ss_pred             EEEEEECCCH
Confidence            6889999994

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.55  E-value=0.001  Score=57.04  Aligned_cols=82  Identities=17%  Similarity=0.196  Sum_probs=57.8

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHH------HcCCeEEEeeCcCCCch
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA------KQGTKVIFSNGQLGMGT  190 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l~------~~g~~vi~iSa~~g~Gi  190 (383)
                      +..++++.|+|...+......++.+++.  +.|+++|+||+|+.+..........+.      .....++++|++.+.|+
T Consensus        80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~  159 (170)
T cd01876          80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGI  159 (170)
T ss_pred             hhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH
Confidence            5678899999998765555555555554  578999999999987665443332222      12256889999999999


Q ss_pred             hhhhHHHHHh
Q 016762          191 MKLSRLAKAL  200 (383)
Q Consensus       191 ~~L~~~l~~l  200 (383)
                      .++.+.+.++
T Consensus       160 ~~l~~~l~~~  169 (170)
T cd01876         160 DELRALIEKW  169 (170)
T ss_pred             HHHHHHHHHh
Confidence            9988776653

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PLN03108 Rab family protein; Provisional

Probab=97.55  E-value=0.00046  Score=63.05  Aligned_cols=105  Identities=10%  Similarity=0.081  Sum_probs=65.4

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~~  161 (383)
                      ..+-+||..-        + ..+.......+..+|.++.|+|...+.+..+.  .+....    ...|+++|.||+||..
T Consensus        55 i~l~l~Dt~G--------~-~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~  125 (210)
T PLN03108         55 IKLQIWDTAG--------Q-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH  125 (210)
T ss_pred             EEEEEEeCCC--------c-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence            4566777432        1 33444445678899999999999776544332  122111    2578999999999975


Q ss_pred             HHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhh-hHHHHHhh
Q 016762          162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKL-SRLAKALA  201 (383)
Q Consensus       162 ~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L-~~~l~~l~  201 (383)
                      ...  ...-.++.++.+..++.+|++++.|+.++ ..+++.+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~  168 (210)
T PLN03108        126 RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY  168 (210)
T ss_pred             ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            321  11222233445678889999999999885 34444443

>TIGR00485 EF-Tu translation elongation factor TU

Probab=97.55  E-value=0.001  Score=66.96  Aligned_cols=84  Identities=20%  Similarity=0.118  Sum_probs=54.2

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHHHH-----HHHHHHHHc
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAKQ  175 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~i-lVlNK~DL~~~~~~~-----~w~~~l~~~  175 (383)
                      ||| +++...+..-+..+|.++.|+|++.+......+...++  .+.|.+ +++||+|+++.++..     +..+++...
T Consensus        83 pGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~  161 (394)
T TIGR00485        83 PGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             Cch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence            888 55666666667889999999999875443333322222  256655 689999998754321     222334443


Q ss_pred             C-----CeEEEeeCcCCC
Q 016762          176 G-----TKVIFSNGQLGM  188 (383)
Q Consensus       176 g-----~~vi~iSa~~g~  188 (383)
                      +     ..++++|+.+|.
T Consensus       162 ~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       162 DFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCCccCccEEECcccccc
Confidence            3     568899998774

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>CHL00071 tufA elongation factor Tu

Probab=97.55  E-value=0.00055  Score=69.15  Aligned_cols=85  Identities=19%  Similarity=0.131  Sum_probs=57.9

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH-----HHHHHHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAK  174 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~-----~w~~~l~~  174 (383)
                      -||| .++.+.+..-+..+|+++.|+|+..+......++..++  .+.| .++++||+|+++.++..     +...+++.
T Consensus        82 tPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~  160 (409)
T CHL00071         82 CPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK  160 (409)
T ss_pred             CCCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence            3887 56677777778999999999999876654443433333  2567 66889999999755422     23334444


Q ss_pred             cC-----CeEEEeeCcCCC
Q 016762          175 QG-----TKVIFSNGQLGM  188 (383)
Q Consensus       175 ~g-----~~vi~iSa~~g~  188 (383)
                      .+     ..++++|+..|.
T Consensus       161 ~~~~~~~~~ii~~Sa~~g~  179 (409)
T CHL00071        161 YDFPGDDIPIVSGSALLAL  179 (409)
T ss_pred             hCCCCCcceEEEcchhhcc
Confidence            33     457889988775

>cd01863 Rab18 Rab18 subfamily

Probab=97.55  E-value=0.00026  Score=61.00  Aligned_cols=102  Identities=16%  Similarity=0.099  Sum_probs=64.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL  159 (383)
                      ..++.+||..-   |      .+........++.+|.++.++|..++.+.....     +..+.  .+.|+++|.||+|+
T Consensus        48 ~~~~~l~D~~g---~------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~  118 (161)
T cd01863          48 KVKLAIWDTAG---Q------ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDK  118 (161)
T ss_pred             EEEEEEEECCC---c------hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcc
Confidence            35677888422   2      344444456688999999999987654432211     11111  25789999999999


Q ss_pred             CCHH-HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~-~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .... ......+.....+..++++|+++|.|+.++.+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~  157 (161)
T cd01863         119 ENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEEL  157 (161)
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            7332 1122223334456778999999999998875543

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04133 Rop_like Rop subfamily

Probab=97.55  E-value=0.00025  Score=63.15  Aligned_cols=103  Identities=13%  Similarity=0.028  Sum_probs=66.8

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H-HHHH---hcCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L-MDQW---LGNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~-l~~~---l~~k~~ilVlNK~  157 (383)
                      ......+.+||..-+         .+........+..+|.+|.|+|..++.+..+.  . +..+   ..+.|+++|.||+
T Consensus        45 ~~~~v~l~i~Dt~G~---------~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~  115 (176)
T cd04133          45 DGNTVNLGLWDTAGQ---------EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKL  115 (176)
T ss_pred             CCEEEEEEEEECCCC---------ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCh
Confidence            445577889985433         23333334578999999999999877665543  1 2222   1367899999999


Q ss_pred             CCCCH---------------HHHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762          158 DMISM---------------ADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       158 DL~~~---------------~~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ||.+.               ++...|.   ++.+. .++.+|+++|.|+.++-+.+.
T Consensus       116 Dl~~~~~~~~~~~~~~~v~~~~~~~~a---~~~~~~~~~E~SAk~~~nV~~~F~~~~  169 (176)
T cd04133         116 DLRDDKQYLADHPGASPITTAQGEELR---KQIGAAAYIECSSKTQQNVKAVFDAAI  169 (176)
T ss_pred             hhccChhhhhhccCCCCCCHHHHHHHH---HHcCCCEEEECCCCcccCHHHHHHHHH
Confidence            99542               1222332   33454 578899999999988754443

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.55  E-value=0.00013  Score=67.19  Aligned_cols=102  Identities=13%  Similarity=0.022  Sum_probs=64.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhcCCCeEEEEEccCCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMI  160 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~~k~~ilVlNK~DL~  160 (383)
                      ....+.+||....         .+........+..+|.+|.|||..++.+..+..     +.....+.|+++|.||+||.
T Consensus        60 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~  130 (219)
T PLN03071         60 GKIRFYCWDTAGQ---------EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (219)
T ss_pred             eEEEEEEEECCCc---------hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence            3467778875322         333333335688999999999988765443221     11122368999999999996


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHH
Q 016762          161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       161 ~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      .......-..+.+..+..++.+|+++|.|+.++-+.
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071        131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             hccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence            432111111333345667889999999998877543

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.55  E-value=0.0001  Score=75.85  Aligned_cols=25  Identities=40%  Similarity=0.466  Sum_probs=22.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..++|+++|.+|+|||||+++|+..
T Consensus        26 ~~~~i~iiGhvdaGKSTL~~~LL~~   50 (474)
T PRK05124         26 SLLRFLTCGSVDDGKSTLIGRLLHD   50 (474)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHh
Confidence            4688999999999999999999744

>cd01864 Rab19 Rab19 subfamily

Probab=97.54  E-value=0.00038  Score=60.48  Aligned_cols=101  Identities=15%  Similarity=0.112  Sum_probs=64.0

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||.        ||| .+........+..+|+++.++|+..+.+.... . +..+.    .+.|+++|.||+|+..
T Consensus        52 ~~l~i~D~--------~G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  122 (165)
T cd01864          52 VKLQIWDT--------AGQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE  122 (165)
T ss_pred             EEEEEEEC--------CCh-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            56778874        444 44455555678899999999999876543221 1 11111    1568999999999975


Q ss_pred             HHH--HHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHH
Q 016762          162 MAD--RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       162 ~~~--~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ...  ...-.+..+..+ ..++.+|+++|.|+.++.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864         123 QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            432  111112223334 357899999999998875543

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04114 Rab30 Rab30 subfamily

Probab=97.53  E-value=0.00027  Score=61.46  Aligned_cols=102  Identities=16%  Similarity=0.129  Sum_probs=64.6

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H----HHHHhc-CCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG-NRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~----l~~~l~-~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||.        ||| ..........+..+|+++.++|..++.+.... .    +..+.. +.|.++|.||+|+.+
T Consensus        56 ~~~~~~D~--------~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~  126 (169)
T cd04114          56 IKLQIWDT--------AGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE  126 (169)
T ss_pred             EEEEEEEC--------CCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence            45666773        333 44555556789999999999998765432211 1    112122 577899999999975


Q ss_pred             HHH-HHHHHHHHHHc-CCeEEEeeCcCCCchhhhhHHHH
Q 016762          162 MAD-RNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       162 ~~~-~~~w~~~l~~~-g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ..+ .....+.+.+. ...++.+|+++|.|+.++.+.+.
T Consensus       127 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114         127 RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            432 12223334332 35688999999999888765543

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.53  E-value=0.00057  Score=73.47  Aligned_cols=97  Identities=20%  Similarity=0.171  Sum_probs=64.7

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH--HHHHHHHHHH----HHc
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AKQ  175 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~w~~~l----~~~  175 (383)
                      ||| ..+.......+..+|++++|+|+.++......+....+  .+.|+++++||+|+...  .....+...+    ...
T Consensus       303 PGh-e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~  381 (742)
T CHL00189        303 PGH-EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKW  381 (742)
T ss_pred             CcH-HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhh
Confidence            888 55666666788999999999999875443222222222  36899999999999753  2222222111    112


Q ss_pred             C--CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          176 G--TKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       176 g--~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      |  ..++++|+++|.|+.+|.+.+..+.
T Consensus       382 g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        382 GGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            3  4688999999999999877765543

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.52  E-value=0.00025  Score=62.78  Aligned_cols=54  Identities=20%  Similarity=0.223  Sum_probs=35.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ++|.++|-+|||||||++++.... . ..+...|+.+..  .+.++.   .+.+.||+|--
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~-f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~   60 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNK-F-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE   60 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC-C-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence            579999999999999999998643 2 223322332211  223332   46799999974

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04131 Rnd Rnd subfamily

Probab=97.52  E-value=0.00047  Score=61.37  Aligned_cols=105  Identities=13%  Similarity=0.056  Sum_probs=64.7

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH----HHhcCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~----~~l~~k~~ilVlNK~  157 (383)
                      .....++.+||..-+         ..........+..+|+++.|||..++.+..+.  .+.    +...+.|+++|.||+
T Consensus        45 ~~~~~~l~iwDt~G~---------~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~  115 (178)
T cd04131          45 DEQRIELSLWDTSGS---------PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKT  115 (178)
T ss_pred             CCEEEEEEEEECCCc---------hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEECh
Confidence            344567888885432         33333333568999999999999876655432  111    122367899999999


Q ss_pred             CCCCH--------------HHHHHHHHHHHHcCC-eEEEeeCcCCCc-hhhhhHHH
Q 016762          158 DMISM--------------ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLA  197 (383)
Q Consensus       158 DL~~~--------------~~~~~w~~~l~~~g~-~vi~iSa~~g~G-i~~L~~~l  197 (383)
                      ||.+.              -..++..++-++.|. .++.+|+++|.+ +.++-..+
T Consensus       116 DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~  171 (178)
T cd04131         116 DLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVA  171 (178)
T ss_pred             hhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHH
Confidence            98531              001112222334564 678899999984 88765443

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04113 Rab4 Rab4 subfamily

Probab=97.52  E-value=0.0004  Score=59.94  Aligned_cols=101  Identities=14%  Similarity=0.080  Sum_probs=66.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||.        ||| .+........+..+|.++.++|..++.+..+. + +....    .+.|+++|.||+|+.
T Consensus        48 ~~~l~l~D~--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  118 (161)
T cd04113          48 RVKLQIWDT--------AGQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA  118 (161)
T ss_pred             EEEEEEEEC--------cch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence            356678874        443 44445555678899999999999876544321 1 12111    267899999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      ....  ...........+..++.+|++++.|+.++.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  156 (161)
T cd04113         119 DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLK  156 (161)
T ss_pred             hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            5432  12223344556678999999999999887544

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04176 Rap2 Rap2 subgroup

Probab=97.51  E-value=0.00018  Score=62.22  Aligned_cols=102  Identities=12%  Similarity=-0.095  Sum_probs=62.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL  159 (383)
                      ...+.+||....         .++.......+..+|.++.|+|..++.+..+..     +.+..  .+.|+++|.||+|+
T Consensus        48 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl  118 (163)
T cd04176          48 PSVLEILDTAGT---------EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL  118 (163)
T ss_pred             EEEEEEEECCCc---------ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            445667875332         233333445688999999999987755432211     11111  26899999999999


Q ss_pred             CCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .+....  ..........+..++.+|+++|.|+.++.+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04176         119 ESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI  158 (163)
T ss_pred             hhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            653221  11111222345678899999999998875443

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd00879 Sar1 Sar1 subfamily

Probab=97.51  E-value=0.00021  Score=63.69  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=62.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC--CcHHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~--~~~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +.++.+||.        ||+ ..........+..+|.+++|+|+.++.+.  ....+...+     .+.|+++++||+|+
T Consensus        62 ~~~~~l~D~--------~G~-~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl  132 (190)
T cd00879          62 NIKFKTFDL--------GGH-EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDL  132 (190)
T ss_pred             CEEEEEEEC--------CCC-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCC
Confidence            345666774        333 23334444678999999999999765322  112233332     25899999999999


Q ss_pred             CC---HHHHHHHHHHHHH-------------cCCeEEEeeCcCCCchhhhhHHHH
Q 016762          160 IS---MADRNAWATYFAK-------------QGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       160 ~~---~~~~~~w~~~l~~-------------~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ..   .++...+......             ....++.+|+++|.|+.++.+.+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~  187 (190)
T cd00879         133 PGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLS  187 (190)
T ss_pred             CCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHH
Confidence            63   3333333221110             113478899999999988766553

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00157 Rho Rho (Ras homology) family

Probab=97.50  E-value=9.6e-05  Score=64.28  Aligned_cols=83  Identities=14%  Similarity=-0.010  Sum_probs=54.5

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEccCCCCHHHHHH-------------HHHHHHHcC
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNREDMISMADRNA-------------WATYFAKQG  176 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~--l~~----~l~~k~~ilVlNK~DL~~~~~~~~-------------w~~~l~~~g  176 (383)
                      ..++.+|+++.++|..++.+.....  +..    ...+.|+++|.||+|+.+......             -.+.....+
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  146 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG  146 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence            3568899999999998654432211  111    122589999999999976553211             112233344


Q ss_pred             C-eEEEeeCcCCCchhhhhHHHH
Q 016762          177 T-KVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       177 ~-~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      . .++.+|++.|.|+.++...+.
T Consensus       147 ~~~~~~~Sa~~~~gi~~l~~~i~  169 (171)
T cd00157         147 AIGYMECSALTQEGVKEVFEEAI  169 (171)
T ss_pred             CeEEEEeecCCCCCHHHHHHHHh
Confidence            4 788899999999988865543

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.50  E-value=0.00038  Score=61.64  Aligned_cols=105  Identities=10%  Similarity=-0.043  Sum_probs=64.8

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~  157 (383)
                      .+....+.+||..-.         ..........+..+|++++|+|..++.+..+..  +...+    .+.|+++|.||+
T Consensus        45 ~~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~  115 (175)
T cd01874          45 GGEPYTLGLFDTAGQ---------EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI  115 (175)
T ss_pred             CCEEEEEEEEECCCc---------cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECH
Confidence            344467788886433         222222234688999999999998765544321  22222    267999999999


Q ss_pred             CCCCHHHH-------------HHHHHHH-HHcC-CeEEEeeCcCCCchhhhhHHH
Q 016762          158 DMISMADR-------------NAWATYF-AKQG-TKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       158 DL~~~~~~-------------~~w~~~l-~~~g-~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      |+....+.             ......+ ++.+ ..++.+|+++|.|+.++-+.+
T Consensus       116 Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~  170 (175)
T cd01874         116 DLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEA  170 (175)
T ss_pred             hhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence            98653211             1111112 2334 468899999999998875443

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd00876 Ras Ras family

Probab=97.50  E-value=0.00058  Score=58.35  Aligned_cols=93  Identities=13%  Similarity=0.004  Sum_probs=59.5

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCCCCHHH--HHHHHHHHHH
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAK  174 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL~~~~~--~~~w~~~l~~  174 (383)
                      |||. .........+..+|+++.|+|...+.+..+.     .+.....  ..|+++|+||+|+.....  .+.......+
T Consensus        55 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  133 (160)
T cd00876          55 AGQE-EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE  133 (160)
T ss_pred             CChH-HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH
Confidence            4543 3344445678899999999998765432211     1222222  689999999999986321  1222223344


Q ss_pred             cCCeEEEeeCcCCCchhhhhHHH
Q 016762          175 QGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       175 ~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .+..++.+|++.+.|+.++.+.+
T Consensus       134 ~~~~~~~~S~~~~~~i~~l~~~l  156 (160)
T cd00876         134 WGCPFIETSAKDNINIDEVFKLL  156 (160)
T ss_pred             cCCcEEEeccCCCCCHHHHHHHH
Confidence            55678999999999998886554

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=97.50  E-value=0.00037  Score=62.92  Aligned_cols=104  Identities=11%  Similarity=-0.043  Sum_probs=63.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL  159 (383)
                      ...+.+||..        || .++.......+..+|++++|+|+.++.+..+.     .+....  .+.|+++|+||+|+
T Consensus        46 ~~~l~i~D~~--------G~-~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl  116 (198)
T cd04147          46 SLTLDILDTS--------GS-YSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADS  116 (198)
T ss_pred             EEEEEEEECC--------Cc-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence            3566778742        32 23333333568999999999998765433221     111111  25899999999999


Q ss_pred             CCH-HHH--HHHHHHHH-HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISM-ADR--NAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~-~~~--~~w~~~l~-~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+. ...  ....+... ..+..++.+|+++|.|+.++.+.+.+
T Consensus       117 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  160 (198)
T cd04147         117 LEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR  160 (198)
T ss_pred             ccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence            763 211  11112222 22456788999999999998766544

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=97.49  E-value=0.00033  Score=62.68  Aligned_cols=102  Identities=10%  Similarity=-0.083  Sum_probs=62.7

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL  159 (383)
                      ...+-+||....         ..........+..+|.++.|+|..++.+..+..     +.+..  .+.|+++|.||+|+
T Consensus        52 ~~~l~i~Dt~G~---------~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl  122 (189)
T PTZ00369         52 TCLLDILDTAGQ---------EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDL  122 (189)
T ss_pred             EEEEEEEeCCCC---------ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            344567775322         333344446788999999999987765422211     11111  15689999999998


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .....  ...........+..++.+|+++|.|+.++.+.+
T Consensus       123 ~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369        123 DSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             ccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            64321  111122223446678999999999998875444

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.49  E-value=0.00014  Score=70.92  Aligned_cols=61  Identities=23%  Similarity=0.330  Sum_probs=39.6

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCcccc----CCCCC---ceeEEE--EEEe-C----CcEEEEecCccccC
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPA----APRPG---VTRVLK--WVRF-G----KDLEFLDSPGIIPM  275 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v----~~~pg---tT~~~~--~~~~-~----~~i~l~DTpG~i~~  275 (383)
                      +..++|++||-.|.||||+||+|.+......    ...+.   .|..+.  ...+ +    -++.++|||||-..
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~   95 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF   95 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence            4678999999999999999999998632221    11222   222222  2222 1    24789999999753

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.48  E-value=0.00021  Score=63.21  Aligned_cols=53  Identities=19%  Similarity=0.161  Sum_probs=33.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC---CcEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~---~~i~l~DTpG~  272 (383)
                      ++|+++|.+|||||||+.++.... . ......++.+..  .+.++   -.+.+.||||-
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~   59 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNA-F-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ   59 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC-C-CCcCCCcceeeeEEEEEECCEEEEEEEEECCCc
Confidence            479999999999999999998643 1 122111221211  12222   24679999996

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.48  E-value=0.00042  Score=66.31  Aligned_cols=85  Identities=13%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             HHHHHhhhcCeEEEEEecCCCCC---CCcH-----HHHHH---hcCCCeEEEEEccCCCCHHHHHHHHHHH-HHc-CCeE
Q 016762          113 ELKDQLKLMDVVIEVRDARIPLS---TTHP-----LMDQW---LGNRKRILVLNREDMISMADRNAWATYF-AKQ-GTKV  179 (383)
Q Consensus       113 ~l~~~idr~DlILeV~DaR~p~~---~~~~-----~l~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~l-~~~-g~~v  179 (383)
                      ++.+.|+||+.+++|+|...+..   ..+.     +++.+   +.++|.++|+||+|+...+.  ..++.+ ++. +..+
T Consensus       267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V  344 (366)
T KOG1489|consen  267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHV  344 (366)
T ss_pred             HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHHHHHHHcCCCcE
Confidence            45678999999999999976622   1111     22222   23789999999999853322  122222 222 3468


Q ss_pred             EEeeCcCCCchhhhhHHHHH
Q 016762          180 IFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       180 i~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+|++.++|..+|.+.+++
T Consensus       345 ~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  345 VPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             EEeeeccccchHHHHHHHhh
Confidence            99999999999888776654

>cd01873 RhoBTB RhoBTB subfamily

Probab=97.48  E-value=0.00037  Score=63.13  Aligned_cols=104  Identities=14%  Similarity=-0.020  Sum_probs=65.6

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH----hcCCCeEEEEEc
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW----LGNRKRILVLNR  156 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~----l~~k~~ilVlNK  156 (383)
                      +....+.+.+||....        ....   ....+..+|+++.|+|..++.+..+..  +...    ..+.|+++|.||
T Consensus        61 ~~~~~v~l~iwDTaG~--------~~~~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK  129 (195)
T cd01873          61 VDGVSVSLRLWDTFGD--------HDKD---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCK  129 (195)
T ss_pred             eCCEEEEEEEEeCCCC--------hhhh---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            3445677889986433        2211   123688999999999998766544331  2111    235789999999


Q ss_pred             cCCCCH-------------------H--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          157 EDMISM-------------------A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       157 ~DL~~~-------------------~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +||...                   .  ......+.-++.|..++.+|+++|.|+.++-+.+
T Consensus       130 ~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~  191 (195)
T cd01873         130 LDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNA  191 (195)
T ss_pred             hhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHH
Confidence            998631                   0  0112222234557788899999999998775443

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01860 Rab5_related Rab5-related subfamily

Probab=97.47  E-value=0.00053  Score=59.14  Aligned_cols=103  Identities=16%  Similarity=0.101  Sum_probs=65.5

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL  159 (383)
                      .+..+.+||.        ||+ .+........+..+|.+++++|+.++.+.....  +..+.    ...|++++.||+|+
T Consensus        48 ~~~~~~i~D~--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~  118 (163)
T cd01860          48 TTVKFEIWDT--------AGQ-ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL  118 (163)
T ss_pred             EEEEEEEEeC--------Cch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            3455677773        443 333444445688999999999998654332211  12221    24679999999998


Q ss_pred             CCHH--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .+..  ............+..++.+|+++|.|+.++.+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd01860         119 ESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI  158 (163)
T ss_pred             cccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            7422  1223333444556788999999999998875544

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.47  E-value=0.00014  Score=68.39  Aligned_cols=53  Identities=25%  Similarity=0.410  Sum_probs=35.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|++.+...  ......|+.+.  ..+.++.   .+.++||+|.-
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~   59 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH   59 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence            689999999999999999986432  22333344332  2334432   46689999964

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.00058  Score=61.02  Aligned_cols=99  Identities=13%  Similarity=0.093  Sum_probs=68.3

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-CCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~-~k~~ilVlNK~DL  159 (383)
                      ..+.+-|||...         +++++..+..+.+.++-||.|+|.....+..+..     +.++.. +.++++|.||+|+
T Consensus        56 k~iKlQIWDTAG---------QERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl  126 (205)
T KOG0084|consen   56 KTIKLQIWDTAG---------QERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDL  126 (205)
T ss_pred             eEEEEEeeeccc---------cHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeecccc
Confidence            344566676543         3888888889999999999999998766665532     222222 4599999999999


Q ss_pred             CCHHHHH--HHHHHHHHcCCe-EEEeeCcCCCchhhh
Q 016762          160 ISMADRN--AWATYFAKQGTK-VIFSNGQLGMGTMKL  193 (383)
Q Consensus       160 ~~~~~~~--~w~~~l~~~g~~-vi~iSa~~g~Gi~~L  193 (383)
                      .+.....  .-.++..+.+.. ++.+|++.+.++.+.
T Consensus       127 ~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~  163 (205)
T KOG0084|consen  127 TEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA  163 (205)
T ss_pred             HhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence            7654321  111233345666 778999999877665

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.00014  Score=71.27  Aligned_cols=60  Identities=25%  Similarity=0.325  Sum_probs=39.8

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccc------cCCCCCceeEEEEEE--eC-----CcEEEEecCcccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCP------AAPRPGVTRVLKWVR--FG-----KDLEFLDSPGIIP  274 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~------v~~~pgtT~~~~~~~--~~-----~~i~l~DTpG~i~  274 (383)
                      +..+++++||-.+-|||||||+|.......      ....+--|..+...+  +.     -++.++|||||-.
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD   91 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD   91 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence            456899999999999999999998763211      222333344443322  21     2467899999964

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=97.45  E-value=0.00014  Score=67.08  Aligned_cols=55  Identities=25%  Similarity=0.303  Sum_probs=39.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCc------------------------------cccCCCCCceeEEEEEEe---CCcEE
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRM------------------------------CPAAPRPGVTRVLKWVRF---GKDLE  265 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~------------------------------~~v~~~pgtT~~~~~~~~---~~~i~  265 (383)
                      +|+++|.+++|||||+.+|.....                              .......|+|++.....+   +..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            389999999999999999963210                              001124689998755444   55789


Q ss_pred             EEecCccc
Q 016762          266 FLDSPGII  273 (383)
Q Consensus       266 l~DTpG~i  273 (383)
                      ++||||..
T Consensus        81 liDtpG~~   88 (219)
T cd01883          81 ILDAPGHR   88 (219)
T ss_pred             EEECCChH
Confidence            99999974

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01875 RhoG RhoG subfamily

Probab=97.45  E-value=0.00063  Score=61.15  Aligned_cols=106  Identities=14%  Similarity=0.041  Sum_probs=66.0

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~----~l~~k~~ilVlNK~  157 (383)
                      .....++-+||...+         .++.......+..+|+++.|+|..++.+..+..  +..    ...+.|+++|.||+
T Consensus        47 ~~~~~~l~i~Dt~G~---------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~  117 (191)
T cd01875          47 DGRTVSLNLWDTAGQ---------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKK  117 (191)
T ss_pred             CCEEEEEEEEECCCc---------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeCh
Confidence            344567778885322         344443345689999999999998766543331  111    11367999999999


Q ss_pred             CCCCHHH-H-------------HHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHH
Q 016762          158 DMISMAD-R-------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       158 DL~~~~~-~-------------~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ||..... .             ..-.++.++.+ ..++.+||+.|.|+.++-+.+.
T Consensus       118 DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~  173 (191)
T cd01875         118 DLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAV  173 (191)
T ss_pred             hhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHH
Confidence            9964311 0             01111122345 4688899999999988755443

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.00016  Score=64.33  Aligned_cols=118  Identities=14%  Similarity=0.058  Sum_probs=79.5

Q ss_pred             ccccchhhh--ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhc--
Q 016762           73 SIEAYEEEC--DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG--  146 (383)
Q Consensus        73 ~iG~Gk~E~--~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l~--  146 (383)
                      =||.-++-.  .+.+.-+.+.|||...+         ++.......+.+.++.+|.|+|..+..+.....  +..+..  
T Consensus        37 TIGaaF~tktv~~~~~~ikfeIWDTAGQ---------ERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~  107 (200)
T KOG0092|consen   37 TIGAAFLTKTVTVDDNTIKFEIWDTAGQ---------ERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQA  107 (200)
T ss_pred             ccccEEEEEEEEeCCcEEEEEEEEcCCc---------ccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhC
Confidence            367777633  55555688999996554         555556667899999999999998655543321  222222  


Q ss_pred             C--CCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          147 N--RKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       147 ~--k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .  .-+-+|.||+||....+  .++-..|..++|.-++.+|+++|.|+.+|-..+-+
T Consensus       108 ~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~  164 (200)
T KOG0092|consen  108 SPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAE  164 (200)
T ss_pred             CCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHH
Confidence            2  22446999999998432  33344566677888889999999999887554433

>cd04148 RGK RGK subfamily

Probab=97.44  E-value=0.00047  Score=63.65  Aligned_cols=103  Identities=15%  Similarity=-0.004  Sum_probs=63.8

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HHhh-hcCeEEEEEecCCCCCCCcH-HH-HHHh-----cCCCeEEEEE
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLK-LMDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLN  155 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~id-r~DlILeV~DaR~p~~~~~~-~l-~~~l-----~~k~~ilVlN  155 (383)
                      ..+.++.+||..-..            ..+. ..+. .+|+++.|+|+.++.+..+. ++ ..+.     .+.|+++|.|
T Consensus        47 ~~~~~l~i~Dt~G~~------------~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~N  114 (221)
T cd04148          47 GEESTLVVIDHWEQE------------MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGN  114 (221)
T ss_pred             CEEEEEEEEeCCCcc------------hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            345677888853332            1111 2345 89999999999876543321 11 1111     2579999999


Q ss_pred             ccCCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          156 REDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       156 K~DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      |+|+......  ..........+..++.+|++.|.|+.++.+.+..
T Consensus       115 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~  160 (221)
T cd04148         115 KSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVR  160 (221)
T ss_pred             ChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999754321  1111222334667889999999999988665543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PLN03110 Rab GTPase; Provisional

Probab=97.43  E-value=0.00065  Score=62.41  Aligned_cols=101  Identities=12%  Similarity=0.129  Sum_probs=66.2

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEcc
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRE  157 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~  157 (383)
                      ..+.+.+||.        ||+ .++.......++.+|.+++|+|..++.+..+  +..++        .+.|+++|.||+
T Consensus        59 ~~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~piiiv~nK~  127 (216)
T PLN03110         59 KTVKAQIWDT--------AGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFDN--VQRWLRELRDHADSNIVIMMAGNKS  127 (216)
T ss_pred             EEEEEEEEEC--------CCc-HHHHHHHHHHhCCCCEEEEEEECCChHHHHH--HHHHHHHHHHhCCCCCeEEEEEECh
Confidence            3456778874        232 4455555677899999999999987654432  22222        257899999999


Q ss_pred             CCCCHHHH-HHHHHHH-HHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          158 DMISMADR-NAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       158 DL~~~~~~-~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ||...... ......+ ...+..++.+|++.|.|+.++.+.+
T Consensus       128 Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l  169 (216)
T PLN03110        128 DLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI  169 (216)
T ss_pred             hcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            98643221 1111122 2346789999999999998886554

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.43  E-value=0.00078  Score=58.98  Aligned_cols=108  Identities=17%  Similarity=0.152  Sum_probs=64.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHH-HHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEcc
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNRE  157 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~-~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~  157 (383)
                      ...++.+||..        |+ ..+.. .....++.+|.++.|+|..++.+..+..     +....  .+.|+++|.||+
T Consensus        49 ~~~~~~i~Dt~--------G~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  119 (170)
T cd04115          49 ERIKVQLWDTA--------GQ-ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKC  119 (170)
T ss_pred             eEEEEEEEeCC--------Ch-HHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            34567788842        22 33332 3346688999999999998765543321     11111  257999999999


Q ss_pred             CCCCHHHH-HHHHHHH-HHcCCeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          158 DMISMADR-NAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       158 DL~~~~~~-~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                      |+...... ......+ ...+..++.+|++.+.+...+.+.+..+.+
T Consensus       120 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~  166 (170)
T cd04115         120 DLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAH  166 (170)
T ss_pred             cchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHH
Confidence            98644321 1122222 233467888999995555555555555543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04125 RabA_like RabA-like subfamily

Probab=97.43  E-value=0.00052  Score=61.20  Aligned_cols=103  Identities=12%  Similarity=0.081  Sum_probs=63.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-CCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~-~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..-   +      .+........++.+|.+++|||..++.+..+..     +..+.. ..|.++|.||+|+.
T Consensus        48 ~~~~~i~Dt~g---~------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~  118 (188)
T cd04125          48 IIKLQIWDTNG---Q------ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV  118 (188)
T ss_pred             EEEEEEEECCC---c------HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence            45566777422   1      344445557789999999999997654432211     111111 46899999999997


Q ss_pred             CHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          161 SMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       161 ~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +....  ..-..+....+..++.+|++.|.|+.++.+.+.
T Consensus       119 ~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~  158 (188)
T cd04125         119 NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV  158 (188)
T ss_pred             ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            43211  111122234466789999999999988755443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12735 elongation factor Tu; Reviewed

Probab=97.42  E-value=0.001  Score=66.99  Aligned_cols=84  Identities=21%  Similarity=0.124  Sum_probs=54.4

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHHHH-----HHHHHHHHc
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAKQ  175 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~i-lVlNK~DL~~~~~~~-----~w~~~l~~~  175 (383)
                      ||| +++.+.+...+..+|+++.|+|+..+......+...++  .+.|.+ +++||+|+++.++..     +...++...
T Consensus        83 PGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~  161 (396)
T PRK12735         83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY  161 (396)
T ss_pred             CCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence            888 56667777778899999999999875433322222222  256766 579999998643322     222233333


Q ss_pred             C-----CeEEEeeCcCCC
Q 016762          176 G-----TKVIFSNGQLGM  188 (383)
Q Consensus       176 g-----~~vi~iSa~~g~  188 (383)
                      +     ..++++|+..|.
T Consensus       162 ~~~~~~~~ii~~Sa~~g~  179 (396)
T PRK12735        162 DFPGDDTPIIRGSALKAL  179 (396)
T ss_pred             CCCcCceeEEecchhccc
Confidence            2     457889998874

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.42  E-value=0.00053  Score=72.24  Aligned_cols=94  Identities=18%  Similarity=0.110  Sum_probs=60.4

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC--HHHHHHHHHHH----HHc
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS--MADRNAWATYF----AKQ  175 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~--~~~~~~w~~~l----~~~  175 (383)
                      ||| ..+.....+....+|+++.|+|+.++......+.....  .+.|+++++||+|+..  .+....+...+    ...
T Consensus       143 PGh-e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~  221 (587)
T TIGR00487       143 PGH-EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDW  221 (587)
T ss_pred             CCC-cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhc
Confidence            677 34444444668899999999999875433332222222  3789999999999953  33333322211    011


Q ss_pred             C--CeEEEeeCcCCCchhhhhHHHH
Q 016762          176 G--TKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       176 g--~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +  ..++++|+++|.|+.+|.+.+.
T Consensus       222 ~~~~~~v~iSAktGeGI~eLl~~I~  246 (587)
T TIGR00487       222 GGDTIFVPVSALTGDGIDELLDMIL  246 (587)
T ss_pred             CCCceEEEEECCCCCChHHHHHhhh
Confidence            2  3578999999999999876654

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04117 Rab15 Rab15 subfamily

Probab=97.41  E-value=0.00047  Score=59.96  Aligned_cols=103  Identities=11%  Similarity=0.099  Sum_probs=63.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HH---HHh-cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD---QWL-GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~---~~l-~~k~~ilVlNK~DL  159 (383)
                      ....+.+||....         .+........+..+|.++.|+|..++.+.....  +.   ... .+.|+++|.||+||
T Consensus        47 ~~~~l~i~D~~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl  117 (161)
T cd04117          47 IKVRIQIWDTAGQ---------ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE  117 (161)
T ss_pred             EEEEEEEEeCCCc---------HhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            3456778885322         333444456788999999999987654432211  11   111 14689999999999


Q ss_pred             CCHHHH-HHHHHH-HHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADR-NAWATY-FAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~-~~w~~~-l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ...... ...... .+..+..++.+|++.|.|+.++.+.+
T Consensus       118 ~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l  157 (161)
T cd04117         118 EQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRL  157 (161)
T ss_pred             ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            654321 111122 23345678899999999988875544

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.41  E-value=0.0013  Score=69.37  Aligned_cols=103  Identities=18%  Similarity=0.143  Sum_probs=66.3

Q ss_pred             EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH---
Q 016762           90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD---  164 (383)
Q Consensus        90 ~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~---  164 (383)
                      +.+||.        ||| ..+.......+..+|++++|+|+.++......+...++  .+.|.++++||+|+.+...   
T Consensus        71 l~~iDT--------pG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~  141 (590)
T TIGR00491        71 LLFIDT--------PGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHE  141 (590)
T ss_pred             EEEEEC--------CCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhcc
Confidence            677774        555 44444445678899999999999876544333333332  3789999999999974210   


Q ss_pred             --------------H-HHHH-------HHHHHc-------------C--CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          165 --------------R-NAWA-------TYFAKQ-------------G--TKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       165 --------------~-~~w~-------~~l~~~-------------g--~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                                    + ..+.       ..+.+.             +  ..++++|+++|.|+.+|...+..+.
T Consensus       142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                          0 0010       011211             1  4678999999999999987765443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04128 Spg1 Spg1p

Probab=97.40  E-value=0.00045  Score=61.74  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=35.1

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||++++.+... .-...|....+.  ..+.++.   .+.+.||+|--
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~   60 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR   60 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch
Confidence            3689999999999999999986532 111222221222  2334432   46789999963

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.39  E-value=0.0002  Score=66.68  Aligned_cols=57  Identities=35%  Similarity=0.511  Sum_probs=45.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EE-EeCCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WV-RFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~-~~~~~i~l~DTpG~i~~  275 (383)
                      -+|++||+|.|||||+++.|+|-. ..++..-|+|.-..  .+ .-+.++.|.|-||+|..
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiieg  119 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEG  119 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcc
Confidence            379999999999999999999753 56777888887642  22 23678999999999964

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.39  E-value=0.00041  Score=61.37  Aligned_cols=104  Identities=15%  Similarity=0.032  Sum_probs=63.5

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNRED  158 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~D  158 (383)
                      .....+.+||..-.         ..........+..+|.+|+|+|..++.+..+..  +...+    .+.|+++|.||+|
T Consensus        46 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~D  116 (174)
T cd01871          46 GKPVNLGLWDTAGQ---------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD  116 (174)
T ss_pred             CEEEEEEEEECCCc---------hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence            34466778884322         233333335688999999999998765544321  22211    2579999999999


Q ss_pred             CCCHHH-H-------------HHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISMAD-R-------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~~~-~-------------~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      |.+... .             ..-.+..++.+ ..++.+|+++|.|+.++.+.+
T Consensus       117 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l  170 (174)
T cd01871         117 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEA  170 (174)
T ss_pred             hccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHH
Confidence            964211 0             11111222344 367889999999998875543

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04167 Snu114p Snu114p subfamily

Probab=97.39  E-value=0.00013  Score=66.82  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      +|+++|.+++|||||+++|+...
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~   24 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQT   24 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhc
Confidence            48999999999999999998643

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.37  E-value=0.00021  Score=62.79  Aligned_cols=104  Identities=13%  Similarity=-0.034  Sum_probs=63.5

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH-HHh---cCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD-QWL---GNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~-~~l---~~k~~ilVlNK~  157 (383)
                      ......+.+||..-   |      .++.......+..+|.++.|+|..++.+..+.  .+. .+.   .+.|.++|.||+
T Consensus        44 ~~~~~~~~i~Dt~G---~------~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~  114 (173)
T cd04130          44 DGKPVRLQLCDTAG---Q------DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQA  114 (173)
T ss_pred             CCEEEEEEEEECCC---C------hhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeCh
Confidence            33345667888432   2      22222223467899999999999876654332  111 121   257999999999


Q ss_pred             CCCCHHH--------------HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHH
Q 016762          158 DMISMAD--------------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       158 DL~~~~~--------------~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~  196 (383)
                      ||.+...              ...-..+.++.+. .++.+|+++|.|+.++.+.
T Consensus       115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~  168 (173)
T cd04130         115 DLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDT  168 (173)
T ss_pred             hhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence            9975321              1111122233454 7889999999999887543

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PRK00049 elongation factor Tu; Reviewed

Probab=97.37  E-value=0.0013  Score=66.26  Aligned_cols=85  Identities=21%  Similarity=0.121  Sum_probs=56.6

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHHHH-----HHHHHHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAK  174 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~i-lVlNK~DL~~~~~~~-----~w~~~l~~  174 (383)
                      -||| .++.+.+...+..+|+++.|+|++.+......++..++  .+.|.+ +++||+|+++.++..     +..+.+..
T Consensus        82 tPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~  160 (396)
T PRK00049         82 CPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK  160 (396)
T ss_pred             CCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence            3888 56777777778999999999999876554443333333  267876 589999998643321     22233433


Q ss_pred             cC-----CeEEEeeCcCCC
Q 016762          175 QG-----TKVIFSNGQLGM  188 (383)
Q Consensus       175 ~g-----~~vi~iSa~~g~  188 (383)
                      .+     ..++++|+..|.
T Consensus       161 ~~~~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        161 YDFPGDDTPIIRGSALKAL  179 (396)
T ss_pred             cCCCccCCcEEEeeccccc
Confidence            33     457889998764

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.35  E-value=0.00084  Score=68.57  Aligned_cols=88  Identities=16%  Similarity=0.115  Sum_probs=57.9

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHHHH-----hcCC-CeEEEEEccCCCCHH--------H
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQW-----LGNR-KRILVLNREDMISMA--------D  164 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~----~~~~l~~~-----l~~k-~~ilVlNK~DL~~~~--------~  164 (383)
                      -||| .++.+.+...+..+|..+.|+|+..+..+    ...+..+.     ..+. ++++++||+|+.+..        .
T Consensus        92 tPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i  170 (447)
T PLN00043         92 APGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEI  170 (447)
T ss_pred             CCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHH
Confidence            4888 77788888888999999999999874211    11222211     1245 568889999987321        1


Q ss_pred             HHHHHHHHHHcC-----CeEEEeeCcCCCchh
Q 016762          165 RNAWATYFAKQG-----TKVIFSNGQLGMGTM  191 (383)
Q Consensus       165 ~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~  191 (383)
                      .++...++.+.|     ..++++|+..|.|+.
T Consensus       171 ~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        171 VKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             HHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence            233334455555     457899999999874

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.35  E-value=0.00067  Score=73.53  Aligned_cols=95  Identities=16%  Similarity=0.099  Sum_probs=61.6

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH--HHHHHHHHHH----HHc
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AKQ  175 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~--~~~~~w~~~l----~~~  175 (383)
                      ||| ..+..........+|++++|+|+.++......+.....  .+.|+++++||+|+...  +........+    ...
T Consensus       345 PGh-e~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~  423 (787)
T PRK05306        345 PGH-EAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEW  423 (787)
T ss_pred             CCC-ccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHh
Confidence            787 34445555678899999999999876443322222222  37899999999999642  2222211111    112


Q ss_pred             C--CeEEEeeCcCCCchhhhhHHHHH
Q 016762          176 G--TKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       176 g--~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      |  ..++++|+++|.|+.+|.+.+..
T Consensus       424 g~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        424 GGDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             CCCceEEEEeCCCCCCchHHHHhhhh
Confidence            2  46889999999999998776654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=97.35  E-value=0.0003  Score=65.13  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      +|+++|..+.|||||+++|....
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~   24 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASA   24 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998543

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.35  E-value=0.00017  Score=72.88  Aligned_cols=55  Identities=29%  Similarity=0.370  Sum_probs=38.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcccc--------------------------------CCCCCceeEEEEEEe---CC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA--------------------------------APRPGVTRVLKWVRF---GK  262 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v--------------------------------~~~pgtT~~~~~~~~---~~  262 (383)
                      ++|+++|.+|+|||||+++|+.......                                +..-|.|.+.....+   +.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            3689999999999999999963321110                                012366777654443   45


Q ss_pred             cEEEEecCcc
Q 016762          263 DLEFLDSPGI  272 (383)
Q Consensus       263 ~i~l~DTpG~  272 (383)
                      .+.++||||.
T Consensus        81 ~~~liDtPGh   90 (406)
T TIGR02034        81 KFIVADTPGH   90 (406)
T ss_pred             EEEEEeCCCH
Confidence            6899999995

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.34  E-value=0.00052  Score=62.72  Aligned_cols=57  Identities=21%  Similarity=0.174  Sum_probs=34.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhh-cCCccccCCCCCceeEEEEEEeC---CcEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~-~~~~~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~  272 (383)
                      ..++|+++|.+|||||||+|++. +.-.-...+..|.......+..+   -.+.+.||+|-
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~   68 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ   68 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc
Confidence            34789999999999999998654 32211222333333322222222   24678999995

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.33  E-value=0.00083  Score=63.21  Aligned_cols=107  Identities=14%  Similarity=-0.051  Sum_probs=64.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-------------cCCCe
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-------------GNRKR  150 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-------------~~k~~  150 (383)
                      ....+-+||..-.         +.+...-...+..+|++|+|||..++.+..+..  +..+.             .+.|+
T Consensus        46 ~~~~l~I~Dt~G~---------~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~pi  116 (247)
T cd04143          46 EVYQLDILDTSGN---------HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPM  116 (247)
T ss_pred             EEEEEEEEECCCC---------hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcE
Confidence            3456678885422         222222223577899999999987654432211  11111             25799


Q ss_pred             EEEEEccCCCCHHH--HHHHHHHHHH-cCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          151 ILVLNREDMISMAD--RNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       151 ilVlNK~DL~~~~~--~~~w~~~l~~-~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      ++|.||+|+.....  ..+..+.+.. .+..++.+|+++|.|++++.+.+..+.
T Consensus       117 IivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         117 VICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             EEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999974221  1222222222 245688999999999999877666543

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04111 Rab39 Rab39 subfamily

Probab=97.33  E-value=0.00079  Score=61.63  Aligned_cols=104  Identities=17%  Similarity=0.121  Sum_probs=65.0

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---hc--CCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---LG--NRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l~--~k~~ilVlNK~DL  159 (383)
                      .+.+.+||.        ||+ .+........++.+|.+++|+|..++.+..+..  +..+   ..  ..++++|.||+|+
T Consensus        51 ~~~l~i~Dt--------~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl  121 (211)
T cd04111          51 RIKLQLWDT--------AGQ-ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL  121 (211)
T ss_pred             EEEEEEEeC--------Ccc-hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence            356777874        332 444444456789999999999998764433211  1111   11  3457899999999


Q ss_pred             CCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ......  ..-....+..+..++.+|+++|.|+.++.+.+.+
T Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  163 (211)
T cd04111         122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQ  163 (211)
T ss_pred             ccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            753211  1111222345677889999999999988665544

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=97.32  E-value=0.00082  Score=71.00  Aligned_cols=80  Identities=21%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHH-HHHh-cCCCeEEEEEccCCCCHHHHHHHHHHH-HHcCCeEEEeeCcCCCchhhhhH
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l-~~~l-~~k~~ilVlNK~DL~~~~~~~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +.+|+++.|+|+....  ++..+ .+.. .++|+++|+||+|+.+......-.+.+ +..|.+++++|+++|.|++++.+
T Consensus        71 ~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        71 EKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKD  148 (591)
T ss_pred             cCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence            4789999999997632  22222 2222 378999999999997543222112223 34577899999999999999877


Q ss_pred             HHHHh
Q 016762          196 LAKAL  200 (383)
Q Consensus       196 ~l~~l  200 (383)
                      .+.+.
T Consensus       149 ~i~~~  153 (591)
T TIGR00437       149 AIRKA  153 (591)
T ss_pred             HHHHH
Confidence            76543

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>smart00053 DYNc Dynamin, GTPase

Probab=97.32  E-value=0.0005  Score=64.33  Aligned_cols=72  Identities=28%  Similarity=0.379  Sum_probs=0.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--------------------------------C----
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------------------G----  261 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--------------------------------~----  261 (383)
                      +++++||-+++||||++|+|+|.. ......-.+|+.+..+.+                                +    
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g~~-~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~  105 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVGRD-FLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTG  105 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhCCC-ccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcC


Q ss_pred             -------------------CcEEEEecCccccCCCCcHHHHHHHHHhc
Q 016762          262 -------------------KDLEFLDSPGIIPMRISDQAAAIKLAICD  290 (383)
Q Consensus       262 -------------------~~i~l~DTpG~i~~~~~~~~~~~~la~~~  290 (383)
                                         .++.|+||||+......+....+...+..
T Consensus       106 ~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~  153 (240)
T smart00053      106 TNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKD  153 (240)
T ss_pred             CCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHH

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.00096  Score=60.27  Aligned_cols=90  Identities=13%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--------CCCeEEEEEccCCCCHHHH--HHHHHH
Q 016762          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMISMADR--NAWATY  171 (383)
Q Consensus       102 w~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--------~k~~ilVlNK~DL~~~~~~--~~w~~~  171 (383)
                      |..+.+.++...+..++.+++-|+.|+|..+..+..+.  ..|+.        ..++++|.||+|+..+.++  +.-...
T Consensus        66 WDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni--~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l  143 (207)
T KOG0078|consen   66 WDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENI--RNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL  143 (207)
T ss_pred             EEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHH--HHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH
Confidence            33334588899999999999999999998876665553  23432        5689999999999875432  222233


Q ss_pred             HHHcCCeEEEeeCcCCCchhhh
Q 016762          172 FAKQGTKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       172 l~~~g~~vi~iSa~~g~Gi~~L  193 (383)
                      -.+.|...+.+||+.|.++.+.
T Consensus       144 A~e~G~~F~EtSAk~~~NI~ea  165 (207)
T KOG0078|consen  144 AREYGIKFFETSAKTNFNIEEA  165 (207)
T ss_pred             HHHhCCeEEEccccCCCCHHHH
Confidence            4456888999999999998765

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.31  E-value=0.00058  Score=57.42  Aligned_cols=52  Identities=23%  Similarity=0.186  Sum_probs=37.6

Q ss_pred             CCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHH
Q 016762          147 NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       147 ~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +.|+++++||+|+............+...+ ..++.+|++.|.|+.++.+.++
T Consensus       108 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       108 NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            679999999999987543333334444333 5688999999999988866553

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.30  E-value=0.0015  Score=63.16  Aligned_cols=91  Identities=18%  Similarity=0.233  Sum_probs=62.9

Q ss_pred             HHHHHHhhhcCeEEEEEecCCCCCCCcH---------HHHHH---hcCCCeEEEEEccCC-CCHHHHHHHHHHHHHcC-C
Q 016762          112 KELKDQLKLMDVVIEVRDARIPLSTTHP---------LMDQW---LGNRKRILVLNREDM-ISMADRNAWATYFAKQG-T  177 (383)
Q Consensus       112 ~~l~~~idr~DlILeV~DaR~p~~~~~~---------~l~~~---l~~k~~ilVlNK~DL-~~~~~~~~w~~~l~~~g-~  177 (383)
                      -++.+.|+||-+++.|+|...-.. .++         +++.+   +.+||.++|+||+|+ .+.++.+...+++.+.. .
T Consensus       229 ~~FLrHIERt~vL~hviD~s~~~~-~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~  307 (369)
T COG0536         229 LRFLRHIERTRVLLHVIDLSPIDG-RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW  307 (369)
T ss_pred             HHHHHHHHhhheeEEEEecCcccC-CCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC
Confidence            355678999999999999863221 111         23332   348999999999994 56666777777776543 2


Q ss_pred             e-EEEeeCcCCCchhhhhHHHHHhhhh
Q 016762          178 K-VIFSNGQLGMGTMKLSRLAKALASD  203 (383)
Q Consensus       178 ~-vi~iSa~~g~Gi~~L~~~l~~l~~~  203 (383)
                      . .+++|+.++.|++.|.+.+.++...
T Consensus       308 ~~~~~ISa~t~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         308 EVFYLISALTREGLDELLRALAELLEE  334 (369)
T ss_pred             CcceeeehhcccCHHHHHHHHHHHHHH
Confidence            2 2239999999999987776666544

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.30  E-value=0.001  Score=55.03  Aligned_cols=102  Identities=17%  Similarity=0.024  Sum_probs=65.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH-------HHhcCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-------QWLGNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~-------~~l~~k~~ilVlNK~DL  159 (383)
                      +.++.+||.        ||+. .........+..+|.+++|+|+..+.........       ....+.|.++++||+|+
T Consensus        44 ~~~~~l~D~--------~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~  114 (157)
T cd00882          44 KVKLQIWDT--------AGQE-RFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL  114 (157)
T ss_pred             EEEEEEEec--------CChH-HHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence            456677774        3332 2233335678899999999999876544332211       11237899999999999


Q ss_pred             CCHHHHHHH---HHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADRNAW---ATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~~~w---~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .........   .......+..++.+|+..+.|+.++.+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  155 (157)
T cd00882         115 PEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL  155 (157)
T ss_pred             ccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence            876543332   11222334678899999999988876544

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.29  E-value=0.0012  Score=67.58  Aligned_cols=87  Identities=24%  Similarity=0.290  Sum_probs=56.5

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------C---cHHHHHHhcCCC-eEEEEEccCC--CC--HHH----
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------T---HPLMDQWLGNRK-RILVLNREDM--IS--MAD----  164 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~-------~---~~~l~~~l~~k~-~ilVlNK~DL--~~--~~~----  164 (383)
                      ||| .++.+.+...+..+|+++.|+|+..+..+       .   ...+...+ +.| +|+++||+|.  +.  .+.    
T Consensus        93 PGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi~~iiv~vNKmD~~~~~~~~~~~~~i  170 (446)
T PTZ00141         93 PGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GVKQMIVCINKMDDKTVNYSQERYDEI  170 (446)
T ss_pred             CCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CCCeEEEEEEccccccchhhHHHHHHH
Confidence            887 56777888889999999999999876421       1   11122222 445 6789999994  32  222    


Q ss_pred             HHHHHHHHHHcC-----CeEEEeeCcCCCchhh
Q 016762          165 RNAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (383)
Q Consensus       165 ~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~  192 (383)
                      .....+.+.+.|     ..++++|+..|.|+.+
T Consensus       171 ~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        171 KKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             HHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            223334444444     4578999999999854

>cd04116 Rab9 Rab9 subfamily

Probab=97.29  E-value=0.0013  Score=57.32  Aligned_cols=103  Identities=8%  Similarity=0.021  Sum_probs=64.3

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh--------cCCCeEEEE
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL--------GNRKRILVL  154 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l--------~~k~~ilVl  154 (383)
                      .....+.+||.        ||+ .+........+..+|.++.++|..++.+.....  +..+.        .+.|+++|.
T Consensus        51 ~~~~~l~i~D~--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~  121 (170)
T cd04116          51 GHFVTLQIWDT--------AGQ-ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLG  121 (170)
T ss_pred             CeEEEEEEEeC--------CCh-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence            34456777873        343 444555556789999999999987664433221  11111        136899999


Q ss_pred             EccCCCCHHH-HHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHH
Q 016762          155 NREDMISMAD-RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       155 NK~DL~~~~~-~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      ||+|+..... .....++.++.+ ..++.+|+++|.|+.++.+.
T Consensus       122 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  165 (170)
T cd04116         122 NKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEE  165 (170)
T ss_pred             ECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHH
Confidence            9999964321 122223334445 46788999999998877443

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04134 Rho3 Rho3 subfamily

Probab=97.28  E-value=0.00074  Score=60.47  Aligned_cols=106  Identities=13%  Similarity=0.093  Sum_probs=64.3

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHH---hcCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQW---LGNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~---l~~~---l~~k~~ilVlNK~  157 (383)
                      .....++.+||..-.         ..........+..+|+++.|||..++.+..+.+   +..+   ..+.|+++|.||+
T Consensus        44 ~~~~~~l~i~Dt~G~---------~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~  114 (189)
T cd04134          44 DGLHIELSLWDTAGQ---------EEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKC  114 (189)
T ss_pred             CCEEEEEEEEECCCC---------hhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence            334467788885432         222222224578899999999988765543321   1222   2267999999999


Q ss_pred             CCCCHHHHH--------------HHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHH
Q 016762          158 DMISMADRN--------------AWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       158 DL~~~~~~~--------------~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ||.......              .-.+...+.+ ..++.+|+++|.|+.++-+.+.
T Consensus       115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~  170 (189)
T cd04134         115 DLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAA  170 (189)
T ss_pred             hhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHH
Confidence            997543211              0111122334 4678899999999988755444

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=97.27  E-value=0.00056  Score=59.75  Aligned_cols=102  Identities=14%  Similarity=0.132  Sum_probs=62.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~--~~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +.++.+||.        ||+ .+........+..+|.+++|+|+..+....  ...+...+     .+.|+++++||+|+
T Consensus        57 ~~~~~~~D~--------~G~-~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  127 (173)
T cd04155          57 GFKLNVWDI--------GGQ-RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL  127 (173)
T ss_pred             CEEEEEEEC--------CCC-HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence            456777873        232 344445556789999999999987643221  11222222     25799999999999


Q ss_pred             CCHHHHHHHHHHHHHc-----CCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADRNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~~~w~~~l~~~-----g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ..........+.+.-.     ...++.+|+++|.|++++.+.+
T Consensus       128 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  170 (173)
T cd04155         128 ATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV  170 (173)
T ss_pred             ccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence            7644333333322111     1246789999999988775443

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.27  E-value=0.00076  Score=58.14  Aligned_cols=53  Identities=38%  Similarity=0.534  Sum_probs=34.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCC--CCCceeEEEEEEeC-C--cEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP--RPGVTRVLKWVRFG-K--DLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~--~pgtT~~~~~~~~~-~--~i~l~DTpG~  272 (383)
                      ||++||-++||||||++++.+.. ..-..  ..|.......+..+ .  .+.+.||+|-
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~   58 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ   58 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS
T ss_pred             CEEEECCCCCCHHHHHHHHHhhc-ccccccccccccccccccccccccccccccccccc
Confidence            58999999999999999999754 22111  12222222223332 2  4789999995

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04131 Rnd Rnd subfamily

Probab=97.27  E-value=0.00059  Score=60.77  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=34.2

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~  272 (383)
                      .+|+++|.+|||||||++++.+.. ....-.|....+. ..+.++.   .+.+.||+|-
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~   59 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDC-YPETYVPTVFENYTASFEIDEQRIELSLWDTSGS   59 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc-CCCCcCCceEEEEEEEEEECCEEEEEEEEECCCc
Confidence            479999999999999999998653 2222122221111 1223332   4679999995

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=97.26  E-value=0.00029  Score=71.10  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=22.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..++|+++|.+|+|||||+++|++.
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~   27 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGV   27 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCe
Confidence            3568999999999999999999863

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.25  E-value=0.0012  Score=62.87  Aligned_cols=89  Identities=24%  Similarity=0.300  Sum_probs=62.3

Q ss_pred             HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc---CCCeEEEEEccCCCCHHH-----------------HHHHHHHH
Q 016762          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---NRKRILVLNREDMISMAD-----------------RNAWATYF  172 (383)
Q Consensus       113 ~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~---~k~~ilVlNK~DL~~~~~-----------------~~~w~~~l  172 (383)
                      .-+..++++|+|+.++|+.++-...++.+...+.   +.|-++|+||+|..+...                 ..+|.+.|
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f  227 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF  227 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence            3456799999999999999877777776555443   689999999999875431                 12233333


Q ss_pred             HHc----------C----CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          173 AKQ----------G----TKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       173 ~~~----------g----~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      ...          |    ..++++|+..|.|+++|++.+-..+
T Consensus       228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence            211          1    2478899999999999888765443

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=97.22  E-value=0.0016  Score=68.79  Aligned_cols=84  Identities=25%  Similarity=0.291  Sum_probs=56.3

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH-Hh-cCCCeEEEEEccCCCCH--H-HHHHHHHHHHHc---
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISM--A-DRNAWATYFAKQ---  175 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~--~-~~~~w~~~l~~~---  175 (383)
                      ||| ..+..++...+..+|.++.|+|+..+.......+.. +. .+.|.++++||+|+...  . ......+.|...   
T Consensus        72 PGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~  150 (594)
T TIGR01394        72 PGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGAD  150 (594)
T ss_pred             CCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccc
Confidence            787 567778888899999999999998654322222222 22 36899999999998642  1 233333444322   


Q ss_pred             ----CCeEEEeeCcCCC
Q 016762          176 ----GTKVIFSNGQLGM  188 (383)
Q Consensus       176 ----g~~vi~iSa~~g~  188 (383)
                          ...++++|++.|.
T Consensus       151 ~e~l~~pvl~~SA~~g~  167 (594)
T TIGR01394       151 DEQLDFPIVYASGRAGW  167 (594)
T ss_pred             cccccCcEEechhhcCc
Confidence                3457889999885

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.21  E-value=0.0019  Score=59.72  Aligned_cols=106  Identities=13%  Similarity=0.054  Sum_probs=64.0

Q ss_pred             ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHH----HhcCCCeEEEEE
Q 016762           82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLN  155 (383)
Q Consensus        82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~----~l~~k~~ilVlN  155 (383)
                      .+.....++-+||..-.         ..+.......+..+|++|.|||..++.+..+.  .+..    ...+.|+++|.|
T Consensus        43 ~~~~~~v~L~iwDt~G~---------e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgn  113 (222)
T cd04173          43 EIDKRRIELNMWDTSGS---------SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGC  113 (222)
T ss_pred             EECCEEEEEEEEeCCCc---------HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence            34445677888885332         33333333568999999999999877554332  1111    123679999999


Q ss_pred             ccCCCCHHH-H-------------HHHHHHHHHcC-CeEEEeeCcCCC-chhhhhHH
Q 016762          156 REDMISMAD-R-------------NAWATYFAKQG-TKVIFSNGQLGM-GTMKLSRL  196 (383)
Q Consensus       156 K~DL~~~~~-~-------------~~w~~~l~~~g-~~vi~iSa~~g~-Gi~~L~~~  196 (383)
                      |+||..... .             +.-...-++.| ..++.+|++++. |+.++-..
T Consensus       114 K~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~  170 (222)
T cd04173         114 KLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHV  170 (222)
T ss_pred             CcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHH
Confidence            999954210 0             01111122345 368889999887 48776443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PLN03127 Elongation factor Tu; Provisional

Probab=97.21  E-value=0.0023  Score=65.44  Aligned_cols=61  Identities=21%  Similarity=0.138  Sum_probs=43.0

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCe-EEEEEccCCCCHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKR-ILVLNREDMISMAD  164 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~-ilVlNK~DL~~~~~  164 (383)
                      -||| +++.+.+..-+..+|++++|+|++.+......++..++.  +.|. ++++||+|+++.++
T Consensus       131 tPGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~  194 (447)
T PLN03127        131 CPGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE  194 (447)
T ss_pred             CCCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH
Confidence            4888 456666666667899999999998776554444444332  5674 68899999996443

>cd04129 Rho2 Rho2 subfamily

Probab=97.21  E-value=0.00076  Score=60.25  Aligned_cols=54  Identities=26%  Similarity=0.311  Sum_probs=33.0

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeC---CcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~---~~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||+|++..... .-...+.+.... ..+.++   ..+.++||+|..
T Consensus         3 Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~   60 (187)
T cd04129           3 KLVIVGDGACGKTSLLSVFTLGEF-PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQE   60 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEECCEEEEEEEEECCCCh
Confidence            699999999999999999984331 111112111111 112222   236788999974

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG1249 consensus Predicted GTPases [General function prediction only]

Probab=97.20  E-value=0.00012  Score=74.25  Aligned_cols=83  Identities=20%  Similarity=0.326  Sum_probs=56.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCc-----cccCCCCCceeEEEEEE--eCCcEEEEecCccccCCC----CcHHHHHHH
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVLKWVR--FGKDLEFLDSPGIIPMRI----SDQAAAIKL  286 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~~~pgtT~~~~~~~--~~~~i~l~DTpG~i~~~~----~~~~~~~~l  286 (383)
                      .-|+.||.||+||+++||++..+-.     ..-++.||||+....+.  +...-.+.||||++.+..    -..++...+
T Consensus       310 ~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~YDTPG~~~~~q~~~llt~eEl~~v  389 (572)
T KOG1249|consen  310 GPVAAVGRTFAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFKRGAWLYDTPGVLNPNQILSLLTSEELLNV  389 (572)
T ss_pred             cchHHhhhhhhccchhhhhhhhhhccchhccccCCCCcccccceeeeccccccceeecCCCccChhhhhhhccHHHhhhc
Confidence            4589999999999999999984322     23578999999976554  345667999999986521    123333344


Q ss_pred             HHhcccccCccChH
Q 016762          287 AICDDIGERSYDVA  300 (383)
Q Consensus       287 a~~~~i~~~~~~~~  300 (383)
                      +....+.++++...
T Consensus       390 ~p~~~lrprtf~vk  403 (572)
T KOG1249|consen  390 TPRRVLRPRTFRVK  403 (572)
T ss_pred             CcccccccceEEcC
Confidence            44455555555444

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.19  E-value=0.0023  Score=71.17  Aligned_cols=104  Identities=18%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH---
Q 016762           90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD---  164 (383)
Q Consensus        90 ~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~---  164 (383)
                      +.+||.        ||| ..+..........+|+++.|+|+..+......+....+  .+.|.++|+||+|+.+...   
T Consensus       528 i~fiDT--------PGh-e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~  598 (1049)
T PRK14845        528 LLFIDT--------PGH-EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISE  598 (1049)
T ss_pred             EEEEEC--------CCc-HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcccccccc
Confidence            677774        666 44444334556779999999999875544433332332  2689999999999975211   


Q ss_pred             ---------------HHHH-------HHHHHHcC---------------CeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          165 ---------------RNAW-------ATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       165 ---------------~~~w-------~~~l~~~g---------------~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                                     ..+.       ...+.+.|               ..++++||++|.|+..|...+..+.+
T Consensus       599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                           0110       00112221               35788999999999999877655543

>TIGR01393 lepA GTP-binding protein LepA

Probab=97.18  E-value=0.00048  Score=72.77  Aligned_cols=56  Identities=29%  Similarity=0.385  Sum_probs=39.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccc--------cC------CCCCceeEEEEEEe-----C---CcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCP--------AA------PRPGVTRVLKWVRF-----G---KDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~--------v~------~~pgtT~~~~~~~~-----~---~~i~l~DTpG~i~  274 (383)
                      +++++|.+|+|||||+++|+....+.        +.      ...|+|.+.+.+.+     +   ..+.|+||||...
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            69999999999999999998542111        11      12477777544332     2   2478999999974

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.18  E-value=0.00082  Score=65.22  Aligned_cols=95  Identities=20%  Similarity=0.366  Sum_probs=66.5

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC---CCcHHHHHHhcCCCeEEEEEccCCCCHHH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---TTHPLMDQWLGNRKRILVLNREDMISMAD  164 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~---~~~~~l~~~l~~k~~ilVlNK~DL~~~~~  164 (383)
                      =+++|.|.        ||| +.+.+.|-.=..-||+.+.++|||.+..   .++..+..+++-+.+++.+||+||++-.+
T Consensus        86 RkFIiADT--------PGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e  156 (431)
T COG2895          86 RKFIIADT--------PGH-EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE  156 (431)
T ss_pred             ceEEEecC--------CcH-HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH
Confidence            34666663        888 4444444444688999999999997654   34566888888899999999999996432


Q ss_pred             --HH----HHHHHHHHcC---CeEEEeeCcCCCchh
Q 016762          165 --RN----AWATYFAKQG---TKVIFSNGQLGMGTM  191 (383)
Q Consensus       165 --~~----~w~~~l~~~g---~~vi~iSa~~g~Gi~  191 (383)
                        -+    .+..+..++|   ..++++|+..|.++.
T Consensus       157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence              22    2333334455   467899999987764

>cd04121 Rab40 Rab40 subfamily

Probab=97.18  E-value=0.00086  Score=60.42  Aligned_cols=56  Identities=16%  Similarity=0.189  Sum_probs=36.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|..+||||||++++.... ......|..+.+.  ..+.++.   .+.+.||+|--
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~   66 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGS-TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG   66 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            4789999999999999999998643 2111122333333  2333332   46789999974

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PRK10218 GTP-binding protein; Provisional

Probab=97.18  E-value=0.00066  Score=71.73  Aligned_cols=57  Identities=21%  Similarity=0.344  Sum_probs=40.2

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccc---------------cCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCP---------------AAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~---------------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      .+|+++|..++|||||+++|+......               .....|+|.......+   +..+.++||||.-.
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d   80 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD   80 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence            369999999999999999998632211               1224577766544333   44688999999753

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.16  E-value=0.0031  Score=66.58  Aligned_cols=100  Identities=18%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             EEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH---
Q 016762           90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD---  164 (383)
Q Consensus        90 ~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~---  164 (383)
                      +.+||.        ||| ..+.......+..+|++++|+|+..+......+...++  .+.|+++++||+|+.+...   
T Consensus        73 i~~iDT--------PG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~  143 (586)
T PRK04004         73 LLFIDT--------PGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTE  143 (586)
T ss_pred             EEEEEC--------CCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhc
Confidence            556774        666 44555555667889999999999875433322222222  3789999999999863210   


Q ss_pred             ---------------HH-------HHHHHHHHcC---------------CeEEEeeCcCCCchhhhhHHHH
Q 016762          165 ---------------RN-------AWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       165 ---------------~~-------~w~~~l~~~g---------------~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                                     ..       ....++.+.|               ..++++|+.+|.|+.+|.+.+.
T Consensus       144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~  214 (586)
T PRK04004        144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA  214 (586)
T ss_pred             CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence                           00       0111222222               3578899999999988866554

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.16  E-value=0.00081  Score=58.83  Aligned_cols=106  Identities=16%  Similarity=0.119  Sum_probs=62.7

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH------HHHHhcCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~------l~~~l~~k~~ilVlNK~  157 (383)
                      ......+.+||..-   |      ..........+..+|+++.++|..++.+..+..      +.....+.|+++|.||+
T Consensus        45 ~~~~~~l~i~Dt~G---~------~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  115 (175)
T cd01870          45 DGKQVELALWDTAG---Q------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK  115 (175)
T ss_pred             CCEEEEEEEEeCCC---c------hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeCh
Confidence            33456678888432   1      222222224578999999999987654332221      11112378999999999


Q ss_pred             CCCCHHHHHH-----------HH---HHHHHcC-CeEEEeeCcCCCchhhhhHHHH
Q 016762          158 DMISMADRNA-----------WA---TYFAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       158 DL~~~~~~~~-----------w~---~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      |+.+......           |.   +...+.+ ..++.+|++.|.|+.++.+.+.
T Consensus       116 Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~  171 (175)
T cd01870         116 DLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMAT  171 (175)
T ss_pred             hcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHH
Confidence            9875322110           11   1112223 3688899999999988865543

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=97.15  E-value=0.0014  Score=71.11  Aligned_cols=81  Identities=21%  Similarity=0.084  Sum_probs=57.1

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHHHHH-h-cCCCeEEEEEccCCCCHHHHHHHHHHH-HHcCCeEEEeeCcCCCchhhhhH
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~~~~~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +.+|+++.|+|+.+..  ++..+... . .++|+++++||+|+..+.......+.+ ++.|.+++++|+++|.|++++.+
T Consensus        84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~  161 (772)
T PRK09554         84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL  161 (772)
T ss_pred             cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence            5899999999997643  23322222 2 378999999999997554332222333 34678899999999999999887


Q ss_pred             HHHHhh
Q 016762          196 LAKALA  201 (383)
Q Consensus       196 ~l~~l~  201 (383)
                      .+.+..
T Consensus       162 ~I~~~~  167 (772)
T PRK09554        162 AIDRHQ  167 (772)
T ss_pred             HHHHhh
Confidence            776553

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.003  Score=63.05  Aligned_cols=99  Identities=22%  Similarity=0.233  Sum_probs=69.5

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc---HHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHH----c
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK----Q  175 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~---~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~----~  175 (383)
                      -||| .++.+.+-.-+.-+|..++|+|+.++....-   ..+.++++.+..++|+||+|.+++..+....+....    .
T Consensus        57 vpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~  135 (447)
T COG3276          57 VPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLA  135 (447)
T ss_pred             CCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccc
Confidence            4788 4445555555778899999999976555443   334455566777999999999987654443332221    1


Q ss_pred             CCeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          176 GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       176 g~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                      ..+++.+|++.|.|+.+|++.+.++..
T Consensus       136 ~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         136 NAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             cccccccccccCCCHHHHHHHHHHhhh
Confidence            235677899999999999999998875

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.14  E-value=0.0022  Score=61.57  Aligned_cols=98  Identities=19%  Similarity=0.203  Sum_probs=64.4

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC----CCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHH----HHHHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS----TTHPLMDQWLGNRKRILVLNREDMISMADRNAW----ATYFAK  174 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~----~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w----~~~l~~  174 (383)
                      .||| +-++..+..=..-.|-.|+|++|..|.-    ..+..-.+.++-+.++++-||+||++++...+-    .++.+.
T Consensus        93 aPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkG  171 (415)
T COG5257          93 APGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKG  171 (415)
T ss_pred             CCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcc
Confidence            5898 4445544433445577788888875432    222223344567899999999999998754322    222221


Q ss_pred             ---cCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          175 ---QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       175 ---~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                         .+.+++++|+.++.+++.|.+.+.+..
T Consensus       172 t~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         172 TVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             cccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence               235799999999999999877776553

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.0014  Score=56.00  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=88.8

Q ss_pred             eEEeecCCCCCCCccccchh-hh-ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC
Q 016762           60 SSWHGGNSNNSNGSIEAYEE-EC-DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT  137 (383)
Q Consensus        60 ~~~~~~~~~~~~~~iG~Gk~-E~-~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~  137 (383)
                      +++|-.--|--.--||-++. .. .+....+.+-|||...         +++++.....+.+.++.++.|.|.....+..
T Consensus        26 rftqglfppgqgatigvdfmiktvev~gekiklqiwdtag---------qerfrsitqsyyrsahalilvydiscqpsfd   96 (213)
T KOG0095|consen   26 RFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG---------QERFRSITQSYYRSAHALILVYDISCQPSFD   96 (213)
T ss_pred             hhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc---------hHHHHHHHHHHhhhcceEEEEEecccCcchh
Confidence            67777776766667888887 22 6777888999999643         3888888889999999999999998777766


Q ss_pred             cH-----HHHHHhcCC-CeEEEEEccCCCCHHHHH-HHHHHHHHc-CCeEEEeeCcCCCchhhh
Q 016762          138 HP-----LMDQWLGNR-KRILVLNREDMISMADRN-AWATYFAKQ-GTKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       138 ~~-----~l~~~l~~k-~~ilVlNK~DL~~~~~~~-~w~~~l~~~-g~~vi~iSa~~g~Gi~~L  193 (383)
                      +.     +++++..++ -.|+|.||+|+.+..++. ...+.|... ......+|++...++++|
T Consensus        97 clpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l  160 (213)
T KOG0095|consen   97 CLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL  160 (213)
T ss_pred             hhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence            52     344443333 357899999999876543 333445433 233456788888888776

>cd04120 Rab12 Rab12 subfamily

Probab=97.12  E-value=0.00095  Score=60.85  Aligned_cols=54  Identities=30%  Similarity=0.363  Sum_probs=35.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC---CcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~i~l~DTpG~i  273 (383)
                      .|.++|..|||||||++++.... ....-.+..+.+.  ..+.++   -.+.+.||+|--
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe   60 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE   60 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence            58999999999999999998543 2211123333333  233443   246799999963

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.12  E-value=0.00077  Score=62.41  Aligned_cols=54  Identities=24%  Similarity=0.381  Sum_probs=33.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~  272 (383)
                      .+|++||.+|||||||++++.+.. ....-.|.+.-+. ..+.++.   .+.+.||+|-
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~-f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~   59 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDA-YPGSYVPTVFENYTASFEIDKRRIELNMWDTSGS   59 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC-CCCccCCccccceEEEEEECCEEEEEEEEeCCCc
Confidence            479999999999999999998643 2212222221111 1223322   4678999996

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=0.003  Score=64.46  Aligned_cols=97  Identities=18%  Similarity=0.144  Sum_probs=62.8

Q ss_pred             chHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcC----
Q 016762          104 PGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQG----  176 (383)
Q Consensus       104 Pgh~~~~~~~l~-~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g----  176 (383)
                      |||.. + ..|+ +=-+-+|++++|+|+.++....-.+-.+..  .+-|.++++||+|..+..- ......+.+.|    
T Consensus        63 PGHeA-F-t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E  139 (509)
T COG0532          63 PGHEA-F-TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPE  139 (509)
T ss_pred             CcHHH-H-HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHh
Confidence            88832 2 2222 335889999999999887665544322222  2789999999999974321 11122233333    


Q ss_pred             -----CeEEEeeCcCCCchhhhhHHHHHhhhh
Q 016762          177 -----TKVIFSNGQLGMGTMKLSRLAKALASD  203 (383)
Q Consensus       177 -----~~vi~iSa~~g~Gi~~L~~~l~~l~~~  203 (383)
                           ..++++||++|.|+.+|...+--+++.
T Consensus       140 ~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev  171 (509)
T COG0532         140 EWGGDVIFVPVSAKTGEGIDELLELILLLAEV  171 (509)
T ss_pred             hcCCceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence                 246789999999999997776555443

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=97.10  E-value=0.00066  Score=58.57  Aligned_cols=108  Identities=16%  Similarity=0.092  Sum_probs=73.5

Q ss_pred             ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEE
Q 016762           82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLN  155 (383)
Q Consensus        82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~-~k~~ilVlN  155 (383)
                      -++...+++-|||..-+         +++-..-.-+.+.++-.|.|+|..+..+....     ++..+++ ...+++|.|
T Consensus        56 n~ed~ra~L~IWDTAGQ---------ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGN  126 (218)
T KOG0088|consen   56 NVEDCRADLHIWDTAGQ---------ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGN  126 (218)
T ss_pred             ccccceeeeeeeeccch---------HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecC
Confidence            34557789999996443         44333333567899999999998776555432     2333343 467899999


Q ss_pred             ccCCCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          156 REDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       156 K~DL~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      |+||-....+  ++-..|-+..|...+.+|++.+.|+.+|-+.+-
T Consensus       127 KiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen  127 KIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             cccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence            9999765432  233345556677788899999999998865543

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=97.09  E-value=0.004  Score=54.81  Aligned_cols=104  Identities=14%  Similarity=0.019  Sum_probs=63.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||.        ||+ .++..........+|.++.++|..+..+....  .+..++     .+.|.++|.||+|+
T Consensus        48 ~~~~~l~D~--------~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  118 (180)
T cd04137          48 DYHLEIVDT--------AGQ-DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL  118 (180)
T ss_pred             EEEEEEEEC--------CCh-HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence            455677874        333 23333333567889999999998754322111  111111     25699999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ...+.  ...+.......+..++.+|++.+.|+.++.+.+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137         119 HTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             hhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            74321  12222333444567889999999999887655543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.08  E-value=0.0034  Score=64.10  Aligned_cols=96  Identities=20%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             chHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHc-----
Q 016762          104 PGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-----  175 (383)
Q Consensus       104 Pgh~~~~~~~l~-~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~-----  175 (383)
                      |||++ + ..|+ +=..-+|+|+.|+.+.++....-.+-....  .+.|+++.+||+|.... ........+...     
T Consensus       209 PGHaA-F-~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E  285 (683)
T KOG1145|consen  209 PGHAA-F-SAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVE  285 (683)
T ss_pred             CcHHH-H-HHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHH
Confidence            89943 2 3333 446789999999999877665443322222  27899999999996422 222223333333     


Q ss_pred             --C--CeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          176 --G--TKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       176 --g--~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                        |  ..++++|+++|.|+..|.+.+--++.
T Consensus       286 ~~GGdVQvipiSAl~g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  286 DLGGDVQVIPISALTGENLDLLEEAILLLAE  316 (683)
T ss_pred             HcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence              3  35789999999999999776655443

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.07  E-value=0.00074  Score=59.93  Aligned_cols=55  Identities=25%  Similarity=0.510  Sum_probs=37.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~  272 (383)
                      +..+|.++|.+|+||||++|.|.......+.++-|..  ...+.. +..+.+.|.+|=
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~--~~~i~~~~~~~~~~d~gG~   68 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN--IEEIKYKGYSLTIWDLGGQ   68 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE--EEEEEETTEEEEEEEESSS
T ss_pred             cEEEEEEECCCccchHHHHHHhhhccccccCcccccc--cceeeeCcEEEEEEecccc
Confidence            4578999999999999999999865433333322222  233333 346889999985

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=97.07  E-value=0.0029  Score=64.62  Aligned_cols=79  Identities=23%  Similarity=0.188  Sum_probs=52.8

Q ss_pred             HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh
Q 016762          114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK  192 (383)
Q Consensus       114 l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~  192 (383)
                      ....++.+|++++|+|+..+.+..+..+.... .++|+++|+||+|+... ....+   ....+..++.+|+++ .|+.+
T Consensus       276 ~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~~~~---~~~~~~~~~~vSak~-~gI~~  350 (442)
T TIGR00450       276 SFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SLEFF---VSSKVLNSSNLSAKQ-LKIKA  350 (442)
T ss_pred             HHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-chhhh---hhhcCCceEEEEEec-CCHHH
Confidence            34678999999999999877654443233332 37899999999999754 22221   223455678899987 47766


Q ss_pred             hhHHH
Q 016762          193 LSRLA  197 (383)
Q Consensus       193 L~~~l  197 (383)
                      +.+.+
T Consensus       351 ~~~~L  355 (442)
T TIGR00450       351 LVDLL  355 (442)
T ss_pred             HHHHH
Confidence            54443

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=97.06  E-value=0.0014  Score=59.75  Aligned_cols=56  Identities=30%  Similarity=0.338  Sum_probs=35.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeC------C--cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG------K--DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~------~--~i~l~DTpG~i  273 (383)
                      ++|.++|-++||||||+|.+.+..... ..++.|.+.....+.++      .  .+.+.||+|--
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e   65 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE   65 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence            369999999999999999999654211 11222332333333332      2  36799999973

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.06  E-value=0.0012  Score=57.76  Aligned_cols=93  Identities=10%  Similarity=0.063  Sum_probs=56.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D  158 (383)
                      .+..+.+||.        ||+ .+........++.+|.+++|+|+.++.+..+  ..+..++     .++|+++|+||+|
T Consensus        41 ~~~~~~i~D~--------~G~-~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~D  111 (167)
T cd04161          41 DKYEVCIFDL--------GGG-ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQD  111 (167)
T ss_pred             CCEEEEEEEC--------CCc-HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCC
Confidence            3566778874        333 3444445578999999999999987643221  1233332     2679999999999


Q ss_pred             CCCHHHHHHHHHHH--H----HcC--CeEEEeeCcCC
Q 016762          159 MISMADRNAWATYF--A----KQG--TKVIFSNGQLG  187 (383)
Q Consensus       159 L~~~~~~~~w~~~l--~----~~g--~~vi~iSa~~g  187 (383)
                      +..........+.+  .    +.+  ..++.+|+++|
T Consensus       112 l~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g  148 (167)
T cd04161         112 KKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG  148 (167)
T ss_pred             CcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence            96543222222222  1    112  34566899988

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=97.03  E-value=0.00098  Score=60.59  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +|+++|..++|||||+.+|++.
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~   23 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGV   23 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04135 Tc10 TC10 subfamily

Probab=96.99  E-value=0.00092  Score=58.43  Aligned_cols=81  Identities=12%  Similarity=0.033  Sum_probs=51.8

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCCCCHHHH--------------HHHHHHHHHc
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDMISMADR--------------NAWATYFAKQ  175 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~--~----l~~~l~~k~~ilVlNK~DL~~~~~~--------------~~w~~~l~~~  175 (383)
                      ..+..+|+++.++|..++.+..+.  .    +.....+.|+++|.||+|+.+....              ..-....++.
T Consensus        67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  146 (174)
T cd04135          67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI  146 (174)
T ss_pred             ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence            357889999999998876543322  1    1112236899999999998643211              0111122334


Q ss_pred             CC-eEEEeeCcCCCchhhhhHH
Q 016762          176 GT-KVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       176 g~-~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +. .++.+|+++|.|++++.+.
T Consensus       147 ~~~~~~e~Sa~~~~gi~~~f~~  168 (174)
T cd04135         147 GAHCYVECSALTQKGLKTVFDE  168 (174)
T ss_pred             CCCEEEEecCCcCCCHHHHHHH
Confidence            53 5788999999999887543

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=96.99  E-value=0.0012  Score=67.58  Aligned_cols=58  Identities=21%  Similarity=0.297  Sum_probs=41.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc------------------------------ccCCCCCceeEEEEEEe---CC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKWVRF---GK  262 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~------------------------------~v~~~pgtT~~~~~~~~---~~  262 (383)
                      ..++|+++|..++|||||+.+|+.....                              ..+...|+|.+.....+   +.
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~   85 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence            4578999999999999999998741100                              01123578888765544   34


Q ss_pred             cEEEEecCccc
Q 016762          263 DLEFLDSPGII  273 (383)
Q Consensus       263 ~i~l~DTpG~i  273 (383)
                      .+.|+||||-.
T Consensus        86 ~i~lIDtPGh~   96 (446)
T PTZ00141         86 YFTIIDAPGHR   96 (446)
T ss_pred             EEEEEECCChH
Confidence            68899999954

>cd04133 Rop_like Rop subfamily

Probab=96.98  E-value=0.0015  Score=58.06  Aligned_cols=54  Identities=20%  Similarity=0.218  Sum_probs=34.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC---CcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~---~~i~l~DTpG~i  273 (383)
                      ++|.++|.++||||||++++.... ....-.| |.-+..  .+.++   -++.+.||+|--
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~~~~-Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~   60 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIP-TVFDNFSANVSVDGNTVNLGLWDTAGQE   60 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCC-CCCCCCC-cceeeeEEEEEECCEEEEEEEEECCCCc
Confidence            479999999999999999999643 2211122 111111  12232   246799999964

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>COG2229 Predicted GTPase [General function prediction only]

Probab=96.98  E-value=0.005  Score=54.57  Aligned_cols=89  Identities=15%  Similarity=0.153  Sum_probs=64.0

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C-CCeEEEEEccCCCCHHHHHHHHHHHHHc--CC
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMADRNAWATYFAKQ--GT  177 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~-k~~ilVlNK~DL~~~~~~~~w~~~l~~~--g~  177 (383)
                      +||| .++.-.+.-..+.++-.+.++|...+.......+..++.  + .|.++..||.||-+..-.+...+++...  ..
T Consensus        75 tPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~  153 (187)
T COG2229          75 TPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV  153 (187)
T ss_pred             CCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence            4787 666666667788899899999999888875555555553  3 7899999999997543333444445443  57


Q ss_pred             eEEEeeCcCCCchhh
Q 016762          178 KVIFSNGQLGMGTMK  192 (383)
Q Consensus       178 ~vi~iSa~~g~Gi~~  192 (383)
                      .++.+++..+.|..+
T Consensus       154 ~vi~~~a~e~~~~~~  168 (187)
T COG2229         154 PVIEIDATEGEGARD  168 (187)
T ss_pred             ceeeeecccchhHHH
Confidence            788888988877654

>PLN03126 Elongation factor Tu; Provisional

Probab=96.98  E-value=0.0045  Score=63.72  Aligned_cols=85  Identities=16%  Similarity=0.107  Sum_probs=55.5

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHHHH-----HHHHHHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAK  174 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~~~-----~w~~~l~~  174 (383)
                      -||| +++.+.+..-+..+|+++.|+|+..+......+...+.  .+.| .++++||+|+++.++..     +..+++.+
T Consensus       151 tPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~  229 (478)
T PLN03126        151 CPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSS  229 (478)
T ss_pred             CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHh
Confidence            4898 55667777778899999999999876544333333322  2566 67889999998754321     22233444


Q ss_pred             cC-----CeEEEeeCcCCC
Q 016762          175 QG-----TKVIFSNGQLGM  188 (383)
Q Consensus       175 ~g-----~~vi~iSa~~g~  188 (383)
                      .|     ..++++|+..|.
T Consensus       230 ~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        230 YEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             cCCCcCcceEEEEEccccc
Confidence            33     457788887763

>PTZ00416 elongation factor 2; Provisional

Probab=96.97  E-value=0.0013  Score=72.36  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=26.0

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCcee
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR  253 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~  253 (383)
                      +|+++|..++|||||+++|+....+......|.|+
T Consensus        21 ni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~   55 (836)
T PTZ00416         21 NMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDAR   55 (836)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCcccccCCcee
Confidence            69999999999999999998754433333444443

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=96.97  E-value=0.0017  Score=60.61  Aligned_cols=55  Identities=22%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeC---CcEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~---~~i~l~DTpG~  272 (383)
                      ..+|.+||-++||||||++++.+.. ......|.+.-+. ..+.++   -.+.|.||+|-
T Consensus        13 ~~KIvvvGd~~VGKTsLi~r~~~~~-F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~   71 (232)
T cd04174          13 RCKLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFENYTAGLETEEQRVELSLWDTSGS   71 (232)
T ss_pred             eEEEEEECCCCCcHHHHHHHHhcCC-CCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCc
Confidence            4689999999999999999998643 2111112111111 112222   24789999995

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=96.97  E-value=0.0011  Score=69.88  Aligned_cols=55  Identities=25%  Similarity=0.402  Sum_probs=37.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccc-----c----------CCCCCceeEEEEEE---eCCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCP-----A----------APRPGVTRVLKWVR---FGKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~-----v----------~~~pgtT~~~~~~~---~~~~i~l~DTpG~i  273 (383)
                      +|+|+|..++|||||+++|+......     +          +..-|+|.......   -+..+.++||||..
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~   75 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA   75 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH
Confidence            59999999999999999998532111     1          11236666543222   25578999999985

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.0015  Score=66.63  Aligned_cols=94  Identities=21%  Similarity=0.207  Sum_probs=65.8

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HHHHHh-cCCCeEEEEEccCCCC--HHHHH-HHHHHHHHcCC
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-GNRKRILVLNREDMIS--MADRN-AWATYFAKQGT  177 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~l~~~l-~~k~~ilVlNK~DL~~--~~~~~-~w~~~l~~~g~  177 (383)
                      -||| ..+.-+..+.+.-||-+|.|+||..+....-. .+..++ .+..+|.|+||+|+-.  ++.+. ...+.|.-...
T Consensus       132 TPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~  210 (650)
T KOG0462|consen  132 TPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA  210 (650)
T ss_pred             CCCc-ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc
Confidence            4898 67788888899999999999999765432211 122222 4788999999999963  33333 23334444456


Q ss_pred             eEEEeeCcCCCchhhhhHHH
Q 016762          178 KVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       178 ~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +++++|++.|.|+.++.+.+
T Consensus       211 ~~i~vSAK~G~~v~~lL~AI  230 (650)
T KOG0462|consen  211 EVIYVSAKTGLNVEELLEAI  230 (650)
T ss_pred             ceEEEEeccCccHHHHHHHH
Confidence            89999999999998875443

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=96.91  E-value=0.0022  Score=57.42  Aligned_cols=54  Identities=17%  Similarity=0.220  Sum_probs=34.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE-E-EEEEeCC---cEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-L-KWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~-~-~~~~~~~---~i~l~DTpG~  272 (383)
                      .++|.++|-++||||||++++.... . .....-|.-+ . ..+.++.   .+.+.||+|-
T Consensus         5 ~~KivvvGd~~vGKTsli~~~~~~~-f-~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~   63 (182)
T cd04172           5 KCKIVVVGDSQCGKTALLHVFAKDC-F-PENYVPTVFENYTASFEIDTQRIELSLWDTSGS   63 (182)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCC-C-CCccCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence            4689999999999999999998643 1 1221111111 1 1223332   4789999996

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PRK10218 GTP-binding protein; Provisional

Probab=96.91  E-value=0.0045  Score=65.54  Aligned_cols=94  Identities=19%  Similarity=0.220  Sum_probs=61.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-h-cCCCeEEEEEccCCCCH--
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISM--  162 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~-l-~~k~~ilVlNK~DL~~~--  162 (383)
                      +..+.+||.        ||| ..+...+...+..+|.+++|+|+..+.......+... . .+.|.++++||+|+...  
T Consensus        67 ~~~inliDT--------PG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~  137 (607)
T PRK10218         67 DYRINIVDT--------PGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARP  137 (607)
T ss_pred             CEEEEEEEC--------CCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCch
Confidence            445566663        555 4556667778999999999999987543332222222 2 37899999999998532  


Q ss_pred             -HHHHHHHHHHHH-------cCCeEEEeeCcCCCc
Q 016762          163 -ADRNAWATYFAK-------QGTKVIFSNGQLGMG  189 (383)
Q Consensus       163 -~~~~~w~~~l~~-------~g~~vi~iSa~~g~G  189 (383)
                       +......+.|..       ....++++|+.+|.+
T Consensus       138 ~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~  172 (607)
T PRK10218        138 DWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIA  172 (607)
T ss_pred             hHHHHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence             233444444432       124588999999874

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.0057  Score=54.41  Aligned_cols=120  Identities=11%  Similarity=0.018  Sum_probs=80.2

Q ss_pred             EeecCCCCCCCccccchh--hhccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH
Q 016762           62 WHGGNSNNSNGSIEAYEE--ECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP  139 (383)
Q Consensus        62 ~~~~~~~~~~~~iG~Gk~--E~~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~  139 (383)
                      +-+|-.|.--.-||-.+-  +.-+.+..+.+-|||..-         |+++......+.+.+.-.|+|+|.....+....
T Consensus        27 ~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG---------qe~frsv~~syYr~a~GalLVydit~r~sF~hL   97 (216)
T KOG0098|consen   27 TDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG---------QESFRSVTRSYYRGAAGALLVYDITRRESFNHL   97 (216)
T ss_pred             hccCccccccceeeeeeceeEEEEcCceEEEEEEecCC---------cHHHHHHHHHHhccCcceEEEEEccchhhHHHH
Confidence            334444444444555444  336777888888998543         377888888999999999999997654444332


Q ss_pred             --HHHHHhc----CCCeEEEEEccCCCCHH-----HHHHHHHHHHHcCCeEEEeeCcCCCchhhh
Q 016762          140 --LMDQWLG----NRKRILVLNREDMISMA-----DRNAWATYFAKQGTKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       140 --~l~~~l~----~k~~ilVlNK~DL~~~~-----~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L  193 (383)
                        -|+++.+    +..++++.||+||...+     +-+.|   -++.|.-...+|++++.|+++.
T Consensus        98 ~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaF---A~ehgLifmETSakt~~~VEEa  159 (216)
T KOG0098|consen   98 TSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAF---AREHGLIFMETSAKTAENVEEA  159 (216)
T ss_pred             HHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHH---HHHcCceeehhhhhhhhhHHHH
Confidence              1333322    56788999999997554     33334   3446666667899999998765

>TIGR00503 prfC peptide chain release factor 3

Probab=96.85  E-value=0.002  Score=67.11  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=19.4

Q ss_pred             eEEeEeecCCCChhHHHHhhh
Q 016762          218 VRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      .+|+|+|.+|+|||||+++|+
T Consensus        12 RniaiiGh~~aGKTTL~e~Ll   32 (527)
T TIGR00503        12 RTFAIISHPDAGKTTITEKVL   32 (527)
T ss_pred             CEEEEEcCCCCCHHHHHHHHH
Confidence            369999999999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=96.82  E-value=0.0011  Score=69.42  Aligned_cols=83  Identities=20%  Similarity=0.074  Sum_probs=59.1

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHH-HHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l-~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ++.|+|+-|+||.+-......-++.+..++|.++++|++|.+.+...+--.+.+ +..|.+++++++++|.|++++++.+
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i  159 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAI  159 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence            677999999999764333333333334489999999999998765332222233 3568999999999999999887766


Q ss_pred             HHhh
Q 016762          198 KALA  201 (383)
Q Consensus       198 ~~l~  201 (383)
                      .++.
T Consensus       160 ~~~~  163 (653)
T COG0370         160 IELA  163 (653)
T ss_pred             HHhc
Confidence            5543

>cd04103 Centaurin_gamma Centaurin gamma

Probab=96.82  E-value=0.002  Score=56.06  Aligned_cols=52  Identities=29%  Similarity=0.249  Sum_probs=32.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~i  273 (383)
                      +|+++|.+|||||||++++....-.  ...+ +|-.  ...+.++.   .+.+.||+|--
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~--~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~   58 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYV--QLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAP   58 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCC--CCCC-CCccceEEEEEECCEEEEEEEEECCCCC
Confidence            6899999999999999987754311  1111 1111  12233332   36789999984

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN00023 GTP-binding protein; Provisional

Probab=96.81  E-value=0.0031  Score=61.44  Aligned_cols=56  Identities=32%  Similarity=0.433  Sum_probs=37.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC----------------cEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK----------------DLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~----------------~i~l~DTpG~  272 (383)
                      .++|.++|..+||||||++.+.+.... ...++-|.+.....+.++.                .+.|.||+|=
T Consensus        21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq   93 (334)
T PLN00023         21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH   93 (334)
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence            478999999999999999999965421 1223334443333333321                2789999995

>cd01875 RhoG RhoG subfamily

Probab=96.80  E-value=0.003  Score=56.68  Aligned_cols=56  Identities=21%  Similarity=0.265  Sum_probs=34.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|.++|-.|||||||++++.... ..-...|...-+. ..+.++.   .+.+.||+|--
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e   62 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNA-FPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE   62 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCC-CCcCCCCceEeeeEEEEEECCEEEEEEEEECCCch
Confidence            3689999999999999999998543 1111111111111 1122332   46789999963

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04103 Centaurin_gamma Centaurin gamma

Probab=96.76  E-value=0.0049  Score=53.63  Aligned_cols=99  Identities=14%  Similarity=0.007  Sum_probs=60.8

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEEc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLNR  156 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l-----~~k~~ilVlNK  156 (383)
                      ......+.+||..-+..              ......+|.++.|+|..++.+..+. . +..+.     .+.|+++|.||
T Consensus        43 ~~~~~~l~i~D~~g~~~--------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK  108 (158)
T cd04103          43 DGQSHLLLIRDEGGAPD--------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQ  108 (158)
T ss_pred             CCEEEEEEEEECCCCCc--------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeH
Confidence            33345678888543321              1234679999999999876665442 1 22221     24689999999


Q ss_pred             cCCCC--HH-HHHHHHHHHH-Hc-CCeEEEeeCcCCCchhhhhHH
Q 016762          157 EDMIS--MA-DRNAWATYFA-KQ-GTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       157 ~DL~~--~~-~~~~w~~~l~-~~-g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      .||..  .. ......+.+. +. +..++.+|+++|.|+.++-+.
T Consensus       109 ~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103         109 DAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             HHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99842  12 1122222232 33 367889999999999877443

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.75  E-value=0.004  Score=53.23  Aligned_cols=101  Identities=15%  Similarity=0.080  Sum_probs=71.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEcc
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRE  157 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--------~~k~~ilVlNK~  157 (383)
                      ..+++-|||..-         |+++......+++.++-+|..+|..+..+...  ++.|.        .+.++|+|.|||
T Consensus        68 kRiklQiwDTag---------qEryrtiTTayyRgamgfiLmyDitNeeSf~s--vqdw~tqIktysw~naqvilvgnKC  136 (193)
T KOG0093|consen   68 KRIKLQIWDTAG---------QERYRTITTAYYRGAMGFILMYDITNEESFNS--VQDWITQIKTYSWDNAQVILVGNKC  136 (193)
T ss_pred             cEEEEEEEeccc---------chhhhHHHHHHhhccceEEEEEecCCHHHHHH--HHHHHHHheeeeccCceEEEEeccc
Confidence            458899999532         46777777788999999999999876544333  33332        168999999999


Q ss_pred             CCCCHHHHH--HHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          158 DMISMADRN--AWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       158 DL~~~~~~~--~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      |+-+...+.  .-.....++|...+..|++.+.+++++-+.+
T Consensus       137 Dmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l  178 (193)
T KOG0093|consen  137 DMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL  178 (193)
T ss_pred             CCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence            997765321  2223345668888889999999988774433

>cd01882 BMS1 Bms1

Probab=96.73  E-value=0.0097  Score=55.11  Aligned_cols=76  Identities=20%  Similarity=0.216  Sum_probs=49.5

Q ss_pred             HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeE-EEEEccCCCCHH-HHHHHHHHHHH-------cCCeEE
Q 016762          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMA-DRNAWATYFAK-------QGTKVI  180 (383)
Q Consensus       112 ~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~i-lVlNK~DL~~~~-~~~~w~~~l~~-------~g~~vi  180 (383)
                      ..+.+.++.+|++++|+|+..+.......+..++.  ++|.+ +|+||+|+.... ......+.+++       .+.+++
T Consensus        95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~  174 (225)
T cd01882          95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLF  174 (225)
T ss_pred             HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence            34445678999999999998776665555555443  56754 599999998432 22222222211       236789


Q ss_pred             EeeCcCC
Q 016762          181 FSNGQLG  187 (383)
Q Consensus       181 ~iSa~~g  187 (383)
                      ++|+++.
T Consensus       175 ~iSa~~~  181 (225)
T cd01882         175 YLSGIVH  181 (225)
T ss_pred             EEeeccC
Confidence            9998765

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.72  E-value=0.024  Score=49.16  Aligned_cols=105  Identities=15%  Similarity=0.060  Sum_probs=70.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH-----hcCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW-----LGNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~-----l~~k~~ilVlNK~DL  159 (383)
                      .+.+-+||..         .+++++.......+.+.-.|.|||.....+..+..  +.++     ..+-.++++.||+||
T Consensus        66 rihLQlWDTA---------GQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL  136 (219)
T KOG0081|consen   66 RIHLQLWDTA---------GQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL  136 (219)
T ss_pred             EEEEeeeccc---------cHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch
Confidence            3456666643         24788887778888899999999987655554421  1111     125568999999999


Q ss_pred             CCHHHHHH--HHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMADRNA--WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~~~~--w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+..++..  -...-.+.|.+.+.+|+-+|.++++-.+.+-.+
T Consensus       137 ~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Lldl  179 (219)
T KOG0081|consen  137 EDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDL  179 (219)
T ss_pred             hhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHH
Confidence            87665432  222334568889999999999988765544433

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.72  E-value=0.006  Score=60.54  Aligned_cols=137  Identities=17%  Similarity=0.179  Sum_probs=82.4

Q ss_pred             cccchhHHHhhcCCee-eE--EeecCCCCCCCccccchh-hh---ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHH
Q 016762           44 SLSSSAPIIQTVGGKQ-SS--WHGGNSNNSNGSIEAYEE-EC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKD  116 (383)
Q Consensus        44 ~~~~~~~~~~~~g~~v-~~--~~~~~~~~~~~~iG~Gk~-E~---~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~  116 (383)
                      ++.++...|+.+|-+- .+  +-.+.+-.+.    .|+- +.   ..+.....+=|+|        .||| +.+.+.+-.
T Consensus        38 tmeK~~~ea~~~gK~sf~fawvlD~tkeERe----rGvTi~~~~~~fet~k~~~tIiD--------aPGH-rdFvknmIt  104 (428)
T COG5256          38 TMEKLEKEAKELGKESFKFAWVLDKTKEERE----RGVTIDVAHSKFETDKYNFTIID--------APGH-RDFVKNMIT  104 (428)
T ss_pred             HHHHHHHHHHhcCCCceEEEEEecCChhHHh----cceEEEEEEEEeecCCceEEEee--------CCch-HHHHHHhhc
Confidence            7888899999898885 22  2111100000    0111 11   1122222334444        4886 777777777


Q ss_pred             HhhhcCeEEEEEecCCCCCC----------CcHHHHHHhcCCCeEEEEEccCCCCHHH--HH----HHHHHHHHcC----
Q 016762          117 QLKLMDVVIEVRDARIPLST----------THPLMDQWLGNRKRILVLNREDMISMAD--RN----AWATYFAKQG----  176 (383)
Q Consensus       117 ~idr~DlILeV~DaR~p~~~----------~~~~l~~~l~~k~~ilVlNK~DL~~~~~--~~----~w~~~l~~~g----  176 (383)
                      -...+|+.++|+|++.+..+          ....|.+.++-..+|+++||+|+++-++  .+    .....++..|    
T Consensus       105 GasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~  184 (428)
T COG5256         105 GASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPK  184 (428)
T ss_pred             chhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            78999999999999987321          2234566667788999999999996321  11    1112222334    


Q ss_pred             -CeEEEeeCcCCCchhhh
Q 016762          177 -TKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       177 -~~vi~iSa~~g~Gi~~L  193 (383)
                       ..++++|+..|.++.+.
T Consensus       185 ~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         185 DVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             CCeEEecccccCCccccc
Confidence             34788999999887654

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=96.72  E-value=0.0015  Score=70.73  Aligned_cols=57  Identities=25%  Similarity=0.324  Sum_probs=37.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcc---------c-c-----CCCCCceeEEEEEE----e---CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMC---------P-A-----APRPGVTRVLKWVR----F---GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~---------~-v-----~~~pgtT~~~~~~~----~---~~~i~l~DTpG~i~  274 (383)
                      .+|+++|..++|||||+++|+.....         . .     ....|+|.+.....    .   +..+.++||||...
T Consensus        20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~   98 (720)
T TIGR00490        20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD   98 (720)
T ss_pred             cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence            47999999999999999999742110         0 0     01145565532211    1   34588999999964

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=96.71  E-value=0.0029  Score=69.60  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=22.1

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMC  243 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~  243 (383)
                      .+|+|+|..++|||||+++|+....+
T Consensus        20 rni~iiGhvd~GKTTL~~~Ll~~~g~   45 (843)
T PLN00116         20 RNMSVIAHVDHGKSTLTDSLVAAAGI   45 (843)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            36999999999999999999865433

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=96.69  E-value=0.0062  Score=54.04  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=73.7

Q ss_pred             ccccchh--hhccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH--HHHhc--
Q 016762           73 SIEAYEE--ECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM--DQWLG--  146 (383)
Q Consensus        73 ~iG~Gk~--E~~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l--~~~l~--  146 (383)
                      -||..++  |..+.+.-+.+.|||..-         ++++...--.-.+.+|..++++|..++.+..+.+-  .+++.  
T Consensus        41 TIgadFltKev~Vd~~~vtlQiWDTAG---------QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa  111 (210)
T KOG0394|consen   41 TIGADFLTKEVQVDDRSVTLQIWDTAG---------QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQA  111 (210)
T ss_pred             ccchhheeeEEEEcCeEEEEEEEeccc---------HHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhc
Confidence            4677777  446666677788888532         36655444455899999999999988766655331  11111  


Q ss_pred             ------CCCeEEEEEccCCCC-------HHHHHHHHHHHHHcC-CeEEEeeCcCCCchhhhh
Q 016762          147 ------NRKRILVLNREDMIS-------MADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       147 ------~k~~ilVlNK~DL~~-------~~~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~  194 (383)
                            .-|.+++.||+|+-.       .+....|.   ...| +..+.+|++.+.++...-
T Consensus       112 ~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC---~s~gnipyfEtSAK~~~NV~~AF  170 (210)
T KOG0394|consen  112 SPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWC---KSKGNIPYFETSAKEATNVDEAF  170 (210)
T ss_pred             CCCCCCcccEEEEcccccCCCCccceeeHHHHHHHH---HhcCCceeEEecccccccHHHHH
Confidence                  348999999999954       23445563   3444 678889999998887653

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=96.66  E-value=0.0052  Score=56.10  Aligned_cols=100  Identities=13%  Similarity=-0.014  Sum_probs=61.5

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMIS  161 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~~k~~ilVlNK~DL~~  161 (383)
                      .+.+.+||..-   |      .+........+..+|.++.++|.....+....     .+.....+.|++++.||+|+..
T Consensus        57 ~i~i~~~Dt~g---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         57 PICFNVWDTAG---Q------EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD  127 (215)
T ss_pred             EEEEEEEECCC---c------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence            45666777522   1      23333333567789999999998765443221     1111224678899999999975


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       162 ~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      ...........+..+..++.+|+++|.|+.+...
T Consensus       128 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  161 (215)
T PTZ00132        128 RQVKARQITFHRKKNLQYYDISAKSNYNFEKPFL  161 (215)
T ss_pred             ccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            4322222334445567788999999999876543

>cd04177 RSR1 RSR1 subgroup

Probab=96.66  E-value=0.0044  Score=53.99  Aligned_cols=102  Identities=11%  Similarity=-0.071  Sum_probs=61.9

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~D  158 (383)
                      ....+.+||...        + .++.......+..+|.++.|||..++.+.....     +.+..  .+.|++++.||+|
T Consensus        47 ~~~~~~i~Dt~G--------~-~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D  117 (168)
T cd04177          47 RQCDLEILDTAG--------T-EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKAD  117 (168)
T ss_pred             EEEEEEEEeCCC--------c-ccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChh
Confidence            335667787532        2 233444445678899999999987654332211     11111  2579999999999


Q ss_pred             CCCHHHH--HHHHHHHHHcC-CeEEEeeCcCCCchhhhhHH
Q 016762          159 MISMADR--NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       159 L~~~~~~--~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +......  ..-....++.+ ..++.+|+++|.|+.++.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~  158 (168)
T cd04177         118 LEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID  158 (168)
T ss_pred             ccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence            9654321  11112223344 56889999999998876443

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=96.63  E-value=0.0022  Score=66.75  Aligned_cols=53  Identities=25%  Similarity=0.463  Sum_probs=0.0

Q ss_pred             EEeEeecCCCChhHHHHhhhc---------------------CCccccCCCCCceeEEEEEEe---CCcEEEEecCc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK---------------------RRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPG  271 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~---------------------~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG  271 (383)
                      +|+|+|.+|+|||||.++|+.                     .........-|.|.......+   +..+.++||||
T Consensus        12 ni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741         12 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=96.62  E-value=0.0099  Score=50.91  Aligned_cols=104  Identities=14%  Similarity=0.089  Sum_probs=75.3

Q ss_pred             ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhc---CCCeEEEEEc
Q 016762           82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG---NRKRILVLNR  156 (383)
Q Consensus        82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l~---~k~~ilVlNK  156 (383)
                      .+....+.+-|||...         .+++...+..+.+....++.|.|....++..+..  ++++..   ..|.++|.||
T Consensus        51 ~i~G~~VkLqIwDtAG---------qErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK  121 (198)
T KOG0079|consen   51 DINGDRVKLQIWDTAG---------QERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNK  121 (198)
T ss_pred             ecCCcEEEEEEeeccc---------HHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccC
Confidence            3445566778888533         3788888889999999999999999887776642  333332   4688999999


Q ss_pred             cCCCCHH-----HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          157 EDMISMA-----DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       157 ~DL~~~~-----~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .|+..+.     +.+.|   -.+.|...+.+|++...+.+..-..+
T Consensus       122 ~d~~~RrvV~t~dAr~~---A~~mgie~FETSaKe~~NvE~mF~ci  164 (198)
T KOG0079|consen  122 NDDPERRVVDTEDARAF---ALQMGIELFETSAKENENVEAMFHCI  164 (198)
T ss_pred             CCCccceeeehHHHHHH---HHhcCchheehhhhhcccchHHHHHH
Confidence            9997654     33444   34678889999999988877654443

>PRK13351 elongation factor G; Reviewed

Probab=96.61  E-value=0.0022  Score=69.20  Aligned_cols=57  Identities=23%  Similarity=0.304  Sum_probs=36.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcc-----cc------CC------CCCceeEEEEEE---eCCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVR---FGKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v------~~------~pgtT~~~~~~~---~~~~i~l~DTpG~i~  274 (383)
                      .+|+++|..|+|||||+++|......     .+      .+      .-|.|.......   -+..+.++||||...
T Consensus         9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            47999999999999999999743211     01      11      124444422211   245789999999863

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.61  E-value=0.017  Score=56.69  Aligned_cols=105  Identities=10%  Similarity=-0.024  Sum_probs=64.1

Q ss_pred             ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-hcCCCeEEEEEccCCC
Q 016762           82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-LGNRKRILVLNREDMI  160 (383)
Q Consensus        82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~-l~~k~~ilVlNK~DL~  160 (383)
                      ..+..+.|+++.+..--. |     ..      ..+.+.+|+++.+.+.   .+..+.+.... ..+..-++|+||+|+.
T Consensus       143 ~~~~~g~d~viieT~Gv~-q-----s~------~~i~~~aD~vlvv~~p---~~gd~iq~~k~gi~E~aDIiVVNKaDl~  207 (332)
T PRK09435        143 LCEAAGYDVILVETVGVG-Q-----SE------TAVAGMVDFFLLLQLP---GAGDELQGIKKGIMELADLIVINKADGD  207 (332)
T ss_pred             HHhccCCCEEEEECCCCc-c-----ch------hHHHHhCCEEEEEecC---CchHHHHHHHhhhhhhhheEEeehhccc
Confidence            555678999999975443 2     11      1257789999999652   22222221111 1122348999999998


Q ss_pred             CHHHHHHHHHHHHH---c--------CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          161 SMADRNAWATYFAK---Q--------GTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       161 ~~~~~~~w~~~l~~---~--------g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      +..........++.   .        ..+++++|+.+|.|+++|.+.+.+..
T Consensus       208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~  259 (332)
T PRK09435        208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR  259 (332)
T ss_pred             chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            75533322222221   1        14688999999999999877766543

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=96.60  E-value=0.0079  Score=56.02  Aligned_cols=47  Identities=17%  Similarity=0.233  Sum_probs=36.1

Q ss_pred             CCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          148 RKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       148 k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .|.++|+||+|+.+.++...|.    + ...++++|++.|.|+++|.+.+-+
T Consensus       177 ~p~iiV~NK~Dl~~~~~~~~~~----~-~~~~~~~SA~~g~gi~~l~~~i~~  223 (233)
T cd01896         177 IPCLYVYNKIDLISIEELDLLA----R-QPNSVVISAEKGLNLDELKERIWD  223 (233)
T ss_pred             eeEEEEEECccCCCHHHHHHHh----c-CCCEEEEcCCCCCCHHHHHHHHHH
Confidence            4889999999999887665432    2 245788999999999988766543

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=96.59  E-value=0.0087  Score=57.06  Aligned_cols=57  Identities=25%  Similarity=0.309  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS  161 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~  161 (383)
                      |||. ++..+....+..+|++++|+|+..+.......+.+..  .++|+++++||+|+..
T Consensus        72 PG~~-df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~  130 (270)
T cd01886          72 PGHV-DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG  130 (270)
T ss_pred             CCcH-HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            7764 4566777889999999999999876544433343333  3789999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK07560 elongation factor EF-2; Reviewed

Probab=96.55  E-value=0.0041  Score=67.47  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +|+++|..++|||||+++|...
T Consensus        22 ni~iigh~d~GKTTL~e~ll~~   43 (731)
T PRK07560         22 NIGIIAHIDHGKTTLSDNLLAG   43 (731)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHH
Confidence            6999999999999999999754

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=96.54  E-value=0.0079  Score=55.68  Aligned_cols=56  Identities=27%  Similarity=0.335  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI  160 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~  160 (383)
                      ||| .++..+....+..+|.++.|+|+..+.......+.+..  .+.|.++++||+|+.
T Consensus        81 PG~-~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          81 PGH-VDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             CCc-cccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence            676 56777888889999999999999877654433333322  367999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.54  E-value=0.0016  Score=58.32  Aligned_cols=92  Identities=24%  Similarity=0.352  Sum_probs=46.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccc--cCCCCCceeEEEEEEeCCcEEEEecCccccCCCCcHHHHH-HHHHhccc---
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAI-KLAICDDI---  292 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~~~~~~~~~-~la~~~~i---  292 (383)
                      .|.|+|..|+||++|++.|.......  ++-.|..+... .-..+..+.|+|+||--+-+. .....+ .+....+|   
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~-~~~~~~~~~~~~k~IIfv   82 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNV-NNSKGKKLRLVDIPGHPRLRS-KLLDELKYLSNAKGIIFV   82 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCG-SSTCGTCECEEEETT-HCCCH-HHHHHHHHHGGEEEEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEe-ecCCCCEEEEEECCCcHHHHH-HHHHhhhchhhCCEEEEE
Confidence            58999999999999999999653221  11111111000 001145789999999854321 111111 11111211   


Q ss_pred             ccCcc---ChHHHHHHHHHHHhc
Q 016762          293 GERSY---DVADVAAILVQMLAR  312 (383)
Q Consensus       293 ~~~~~---~~~~~~~~ll~~l~~  312 (383)
                      -+++.   +..++|.+|.++|..
T Consensus        83 vDSs~~~~~~~~~Ae~Ly~iL~~  105 (181)
T PF09439_consen   83 VDSSTDQKELRDVAEYLYDILSD  105 (181)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHH
T ss_pred             EeCccchhhHHHHHHHHHHHHHh
Confidence            12221   346788888887753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=96.54  E-value=0.017  Score=49.55  Aligned_cols=120  Identities=11%  Similarity=0.030  Sum_probs=71.8

Q ss_pred             hhccccCCCcEEEEcCC-CCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC--CCcHHHHHHhc-----CCCeE
Q 016762           80 ECDWADLDADLYYWTKS-LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRI  151 (383)
Q Consensus        80 E~~~~~~~~~~vi~~~~-L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~--~~~~~l~~~l~-----~k~~i  151 (383)
                      |.++...++++.-.+.. .+-.-|.-|.+.++...-..+.+.++.|++++||.+|..  ....++..++.     ..|++
T Consensus        47 edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~L  126 (186)
T KOG0075|consen   47 EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLL  126 (186)
T ss_pred             hhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEE
Confidence            44555555544433322 111124333335555555678999999999999987643  23445666654     68999


Q ss_pred             EEEEccCCCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          152 LVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       152 lVlNK~DL~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ++.||.|+-..-.-.+..+.+.     ....-++.+|++...+++.+.+-+.+
T Consensus       127 VLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~  179 (186)
T KOG0075|consen  127 VLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIE  179 (186)
T ss_pred             EecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHH
Confidence            9999999864322222222221     01134677999999998877665443

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=96.53  E-value=0.0036  Score=58.29  Aligned_cols=56  Identities=18%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---C-CcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---G-KDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~-~~i~l~DTpG~i~  274 (383)
                      ||.++|..++||||+.+.+..+-...-....|.|.+++..++   + -.+.+.|+||-..
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~   60 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDD   60 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCS
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccc
Confidence            589999999999999999996533333345678888765554   2 2678999999864

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=96.48  E-value=0.0034  Score=66.53  Aligned_cols=56  Identities=27%  Similarity=0.378  Sum_probs=37.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCcc--------cc------CCCCCceeEEEEEEe--------CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMC--------PA------APRPGVTRVLKWVRF--------GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~--------~v------~~~pgtT~~~~~~~~--------~~~i~l~DTpG~i~  274 (383)
                      +++|+|..++|||||+++|+.....        .+      +..-|.|...+.+.+        +..+.|+||||...
T Consensus         9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            6999999999999999999753211        11      112366665433322        23478999999964

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=96.48  E-value=0.00097  Score=59.14  Aligned_cols=102  Identities=16%  Similarity=0.173  Sum_probs=61.1

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC--CCcHHHHHHhc-----CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~--~~~~~l~~~l~-----~k~~ilVlNK~D  158 (383)
                      .+..+.+||-....         ........++..+|.|++|+|+.++..  ....++..++.     +.|+++++||.|
T Consensus        56 ~~~~~~~~d~gG~~---------~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D  126 (175)
T PF00025_consen   56 KGYSLTIWDLGGQE---------SFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQD  126 (175)
T ss_dssp             TTEEEEEEEESSSG---------GGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTT
T ss_pred             CcEEEEEEeccccc---------cccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccc
Confidence            45567777743321         111222246789999999999876432  12223444433     689999999999


Q ss_pred             CCCHHHHHHHHHHHH------HcCCeEEEeeCcCCCchhhhhHH
Q 016762          159 MISMADRNAWATYFA------KQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       159 L~~~~~~~~w~~~l~------~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +..........+.+.      +....++.+|+.+|.|+.+..+-
T Consensus       127 ~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~W  170 (175)
T PF00025_consen  127 LPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEW  170 (175)
T ss_dssp             STTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHH
T ss_pred             ccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHH
Confidence            865322222223221      12245778999999998775443

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=96.46  E-value=0.0053  Score=53.48  Aligned_cols=35  Identities=31%  Similarity=0.525  Sum_probs=29.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV  251 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgt  251 (383)
                      .++|.++|..|+||||++++|.+...-.+++..|.
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf   50 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGF   50 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCCccccCCccce
Confidence            57899999999999999999998775556665553

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=96.45  E-value=0.0036  Score=63.36  Aligned_cols=40  Identities=28%  Similarity=0.368  Sum_probs=28.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC--ccccCCCCCceeEE
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVL  255 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pgtT~~~  255 (383)
                      ..++|+++|.-++|||||+.+|++..  ...-+-..|.|.+.
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~   49 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRL   49 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEe
Confidence            45789999999999999999997631  11112234667664

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.44  E-value=0.011  Score=57.35  Aligned_cols=95  Identities=18%  Similarity=0.271  Sum_probs=56.1

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC---CcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHH--------
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST---THPLMDQWLGNRKRILVLNREDMISMADRNAWATY--------  171 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~---~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~--------  171 (383)
                      +|||..- .+.+---..-.|+.+.|+|+..+...   .+.-+.+ +..+++++|+||+|+.+..++..-.+.        
T Consensus        77 CPGHasL-IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~-~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt  154 (522)
T KOG0461|consen   77 CPGHASL-IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE-LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT  154 (522)
T ss_pred             CCCcHHH-HHHHHhhhheeeeeeEEEehhcccccccchhhhhhh-hhccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence            7999443 33333223345666777777654333   3332322 336789999999999987543332222        


Q ss_pred             HHHcC----CeEEEeeCcCC----CchhhhhHHHHH
Q 016762          172 FAKQG----TKVIFSNGQLG----MGTMKLSRLAKA  199 (383)
Q Consensus       172 l~~~g----~~vi~iSa~~g----~Gi~~L~~~l~~  199 (383)
                      ++..+    .+++.+|+..|    .++.+|++.+++
T Consensus       155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s  190 (522)
T KOG0461|consen  155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALES  190 (522)
T ss_pred             HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHH
Confidence            22222    46889999988    667677666543

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=96.42  E-value=0.0034  Score=55.70  Aligned_cols=58  Identities=21%  Similarity=0.301  Sum_probs=39.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc----ccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC----PAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~----~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i  273 (383)
                      ..++|.+.|-++||||||+|....++--    .+=...|.|++++.-.---.+.+.||.|=-
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQE   69 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQE   69 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHH
Confidence            4689999999999999999999865311    011224677776542111236789999963

>cd04165 GTPBP1_like GTPBP1-like

Probab=96.34  E-value=0.0072  Score=56.01  Aligned_cols=21  Identities=38%  Similarity=0.642  Sum_probs=19.3

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      +|+++|..++|||||+++|+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~   21 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQ   21 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999984

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=96.32  E-value=0.0072  Score=54.98  Aligned_cols=51  Identities=20%  Similarity=0.204  Sum_probs=31.3

Q ss_pred             eecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          223 VGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       223 vG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      ||-+|||||||++++...... ...+..|.+.....+.++   -.+.+.||+|--
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e   55 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE   55 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch
Confidence            689999999999999854311 122223333332333332   257899999974

Ran is involved in the active transport of proteins through nuclear pores.

>cd04167 Snu114p Snu114p subfamily

Probab=96.32  E-value=0.011  Score=54.14  Aligned_cols=64  Identities=22%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI  160 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~  160 (383)
                      ..+.+||.        ||| .++.......+..+|.++.|+|+..+......++.+..  .++|.++|+||+|++
T Consensus        71 ~~i~iiDt--------pG~-~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          71 YLFNIIDT--------PGH-VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEEEEEC--------CCC-cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence            44556663        555 34556667788999999999999866544333322222  368999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=96.31  E-value=0.0057  Score=61.80  Aligned_cols=88  Identities=20%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--------------CCCeEEEEEccCCCCHHHHHHH--HHHHH
Q 016762          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------------NRKRILVLNREDMISMADRNAW--ATYFA  173 (383)
Q Consensus       110 ~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--------------~k~~ilVlNK~DL~~~~~~~~w--~~~l~  173 (383)
                      ..+..++.+.++|+|++|+|+-...++.+..+++.+.              +++.+++.||+|++++-....|  ..|..
T Consensus       338 gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~  417 (531)
T KOG1191|consen  338 GIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS  417 (531)
T ss_pred             hHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccc
Confidence            3455567799999999999997766777666655542              2789999999999987321222  11222


Q ss_pred             HcC----CeEEEeeCcCCCchhhhhHHH
Q 016762          174 KQG----TKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       174 ~~g----~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ..|    ..+.++|++++.|+.+|...+
T Consensus       418 ~~~~~~~~i~~~vs~~tkeg~~~L~~al  445 (531)
T KOG1191|consen  418 AEGRSVFPIVVEVSCTTKEGCERLSTAL  445 (531)
T ss_pred             cccCcccceEEEeeechhhhHHHHHHHH
Confidence            212    234558888888887775443

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=96.29  E-value=0.0052  Score=52.84  Aligned_cols=102  Identities=14%  Similarity=0.102  Sum_probs=64.5

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc-CCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~-~k~~ilVlNK~  157 (383)
                      +...+.+-+||....         ..........+..+|.++.+||..++.+..+..     +..... ..|++++.||+
T Consensus        44 ~~~~~~l~i~D~~g~---------~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~  114 (162)
T PF00071_consen   44 DGKPVNLEIWDTSGQ---------ERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKS  114 (162)
T ss_dssp             TTEEEEEEEEEETTS---------GGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETT
T ss_pred             ccccccccccccccc---------ccccccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            345567788884322         222223345689999999999987654443321     222222 47899999999


Q ss_pred             CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762          158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~  194 (383)
                      |+.....  .+...+...+.+..++.+|++.+.|+.++-
T Consensus       115 D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  153 (162)
T PF00071_consen  115 DLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIF  153 (162)
T ss_dssp             TGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHH
T ss_pred             cccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHH
Confidence            9876322  122223344556788999999999988763

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	383
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		5e-45
3cnl_A	262	Crystal Structure Of Gnp-Bound Ylqf From T. Maritim		2e-28
2dyk_A	161	Crystal Structure Of N-Terminal Gtp-Binding Domain		5e-06
4dcs_A	456	Crystal Structure Of B. Subtilis Enga In Complex Wi		1e-05
3r9w_A	307	Crystal Structure Of Era In Complex With Mggdpnp An		2e-05
3iev_A	308	Crystal Structure Of Era In Complex With Mggnp And		2e-05
1wf3_A	301	Crystal Structure Of Gtp-Binding Protein Tt1341 Fro		3e-05
3h2y_A	368	Crystal Structure Of Yqeh Gtpase From Bacillus Anth		4e-05
1xzp_A	482	Structure Of The Gtp-Binding Protein Trme From Ther		7e-05
1sul_A	195	Crystal Structure Of The Apo-Ysxc Length = 195		1e-04
1mky_A	439	Structural Analysis Of The Domain Interactions In D		2e-04
3pqc_A	195	Crystal Structure Of Thermotoga Maritima Ribosome B		4e-04
2hjg_A	436	The Crystal Structure Of The B. Subtilis Yphc Gtpas		5e-04

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score =  178 bits (451), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 161/284 (56%), Gaps = 15/284 (5%)
Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62
Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182
Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLAR-IPTVGITALQNRYKID--------MD 330
           +   ++LA+   I +   ++ DVA   ++ L    P      L+ RY +D        + 
Sbjct: 183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYP----ERLKERYGLDEIPEDIAELF 238
Query: 331 GTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERP 374
              G+     ++  L N D       I+ D R  KFG +S E+P
Sbjct: 239 DAIGEKRGCLMSGGLINYDKTTEV--IIRDIRTEKFGRLSFEQP 280

>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima Length = 262

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 138/281 (49%), Gaps = 31/281 (11%)
Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           + WYPGHI K ++++KD L+L++ V+EVRDAR P +T+   +D     ++ I++LN+ D+
Sbjct: 1   MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDI 58
Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  +F KQG +VI ++              K     V +K+ S     R  R
Sbjct: 59  ADEKTTKKWVEFFKKQGKRVITTH--------------KGEPRKVLLKKLS---FDRLAR 101
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             IVG PN GKS++IN+L  +R      +PG+T+ ++W      ++ LD+PGI+   I  
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFS 161
Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339
           +  A KL +   +     +   +     ++ AR  ++GI +  + +  D        F +
Sbjct: 162 EDLAAKLLLVGSLPVERIEDQRIFERAFEIFAR--SIGIESSFSEFFED--------FAR 211
Query: 340 KLALHLFNG--DTHQAAFRILTDFRKGKFGWISLERPPRLS 378
           K  L    G  D  +A     T+  +GK G +S ERP  ++
Sbjct: 212 KRGLLKKGGVPDIERALMLFFTEVAQGKAGRVSFERPEDIT 252

>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 26/35 (74%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256
           IVG PNVGKSSL NRLLK+R    A  PGVTR LK
Sbjct: 6   IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLK 40

>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Sulfate Ion And Gdp Length = 456

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 212 GLLPRAVRAG-----IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFG 261
           GL+PR    G     IVG PNVGKS++ NR+   R+      PGVTR       +W+ + 
Sbjct: 13  GLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY- 71
Query: 262 KDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQ 308
            D   +D+ GI    I D+     LA      E + D ADV   +V 
Sbjct: 72  -DFNLIDTGGI---DIGDEPF---LAQIRQQAEIAMDEADVIIFMVN 111

>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And Nucleotides 1506- 1542 Of 16s Ribosomal Rna Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPM 275
             IVG PNVGKS+L+N LL  ++   +P+ G TR+    +K +     + FLD+PGI   
Sbjct: 12  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 276 RISDQAAAIKLAICDDIGERSYDVADVAAILV 307
           + SD      +    +I ++S + ADV   ++
Sbjct: 72  KKSDVLGHSMV----EIAKQSLEEADVILFMI 99

>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPM 275
             IVG PNVGKS+L+N LL  ++   +P+ G TR+    +K +     + FLD+PGI   
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 276 RISDQAAAIKLAICDDIGERSYDVADVAAILV 307
           + SD      +    +I ++S + ADV   ++
Sbjct: 73  KKSDVLGHSMV----EIAKQSLEEADVILFMI 100

>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From Thermus Thermophilus Hb8 Length = 301

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 7/57 (12%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI 272
            IVG PNVGKS+L+N LL  ++ P +PRP  TR     +L   R  + + F+D+PG+
Sbjct: 11  AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGL 65

>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis With Dgdp Bound Length = 368

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 28/149 (18%)
Query: 139 PLMDQWLGNRKRILVLNREDMISMADRN----AWATYFAKQ-GTK---VIFSNGQLGMGT 190
           P + +++GN K +LV N+ D+I  + ++     W  Y AKQ G K   V   +   G G 
Sbjct: 88  PGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWXRYSAKQLGLKPEDVFLISAAKGQGI 147
Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK------RRMCP 244
            +L       A  +   R  K +        +VG  NVGKS+ INR +K        +  
Sbjct: 148 AEL-------ADAIEYYRGGKDVY-------VVGCTNVGKSTFINRXIKEFSDETENVIT 193
Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
            +  PG T  L  +   ++    D+PGII
Sbjct: 194 TSHFPGTTLDLIDIPLDEESSLYDTPGII 222

>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Length = 482

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 187 GMGTMKLSRLAKALASDVNVKRRSKG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 245
           G    +L R+ + L  ++  K+   G LL R +R  IVG PNVGKS+L+NRLL       
Sbjct: 214 GEVVTRLERIKEKLTEEL--KKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIV 271
Query: 246 APRPGVTR 253
              PG TR
Sbjct: 272 TDIPGTTR 279

>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc Length = 195

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRP 249
           MK+++ ++ + S V  ++  +G LP      + G  NVGKSS IN L+ R+ +   + +P
Sbjct: 1   MKVTK-SEIVISAVKPEQYPEGGLPEI---ALAGRSNVGKSSFINSLINRKNLARTSSKP 56
Query: 250 GVTRVLKWVRFGKDLEFLDSPG 271
           G T+ L +     +L F+D PG
Sbjct: 57  GKTQTLNFYIINDELHFVDVPG 78

>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A Switch Protein Containing Two Gtpase Domains Length = 439

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           SK  +  A++  IVG PNVGKS+L N +L +     +P PG TR
Sbjct: 173 SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216

>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274
           P       VG  NVGKSSL+N L  R++   +  PG TR + +        F+D PG   
Sbjct: 21  PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGY 80
Query: 275 MRISDQAAAIKLAICDD 291
            ++S +   +   + +D
Sbjct: 81  AKVSKKERMLWKRLVED 97

>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In Complex With Gdp Length = 436

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI 272
            IVG PNVGKS++ NR+   R+      PGVTR       +W+ +  D   +D+ GI
Sbjct: 7   AIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGI 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	383
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	1e-110
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	1e-97
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	3e-35
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	4e-33
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	2e-10
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	6e-10
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-09
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	1e-08
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	2e-08
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	2e-07
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	3e-08
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	7e-07
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	1e-05
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	1e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	2e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	3e-05
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	3e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	4e-05
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	6e-05
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	7e-05
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	1e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	1e-04
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	1e-04
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	2e-04
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	7e-04

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score =  324 bits (832), Expect = e-110
 Identities = 97/282 (34%), Positives = 158/282 (56%), Gaps = 9/282 (3%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
           A I+G PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339
           +   ++LA+   I +   ++ DVA   ++ L          L+ RY +D           
Sbjct: 183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYP---ERLKERYGLDEIPEDIAELFD 239

Query: 340 KLALH---LFNG---DTHQAAFRILTDFRKGKFGWISLERPP 375
            +      L +G   +  +    I+ D R  KFG +S E+P 
Sbjct: 240 AIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQPT 281

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score =  290 bits (744), Expect = 1e-97
 Identities = 77/282 (27%), Positives = 127/282 (45%), Gaps = 39/282 (13%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           + WYPGHI K ++++KD L+L++ V+EVRDAR P +T+   +D     ++ I++LN+ D+
Sbjct: 1   MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDI 58

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  +F KQG +VI ++       +                   K    R  R
Sbjct: 59  ADEKTTKKWVEFFKKQGKRVITTHKGEPRKVL-----------------LKKLSFDRLAR 101

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             IVG PN GKS++IN+L  +R      +PG+T+ ++W      ++ LD+PGI+   I  
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFS 161

Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339
           +  A KL +   +     +   +     ++ AR              I+   +    F +
Sbjct: 162 EDLAAKLLLVGSLPVERIEDQRIFERAFEIFAR-----------SIGIESSFS---EFFE 207

Query: 340 KLA----LHLFNG--DTHQAAFRILTDFRKGKFGWISLERPP 375
             A    L    G  D  +A     T+  +GK G +S ERP 
Sbjct: 208 DFARKRGLLKKGGVPDIERALMLFFTEVAQGKAGRVSFERPE 249

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score =  132 bits (332), Expect = 3e-35
 Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 32/225 (14%)

Query: 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWAT 170
            + L    K   +V+++ D      +  P + +++GN K +LV N+ D+I  + ++    
Sbjct: 60  LRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVK 119

Query: 171 YFAKQGTK--------VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGI 222
           ++ +   K        V   +   G G  +L+   +                       +
Sbjct: 120 HWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR--------------GGKDVYV 165

Query: 223 VGYPNVGKSSLINRLLKR------RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276
           VG  NVGKS+ INR++K        +   +  PG T  L  +   ++    D+PGII   
Sbjct: 166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHH 225

Query: 277 ISDQAAAIK----LAICDDIGERSYDVADVAAILVQMLARIPTVG 317
                   +    +    +I    + + +   +    LAR   V 
Sbjct: 226 QMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVS 270

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score =  126 bits (317), Expect = 4e-33
 Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 34/237 (14%)

Query: 97  LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNR 156
           ++ V             L    +   +V+ + D      +  P + ++  +   +LV N+
Sbjct: 51  VQDVPLDDDDF---LSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNK 107

Query: 157 EDM----ISMADRNAWATYFAKQG----TKVIFSNGQLGMGTMKLSRLAKALASDVNVKR 208
            D+    +       W    A++       V   +   G+G  K+               
Sbjct: 108 ADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR------- 160

Query: 209 RSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWVRFGKD 263
                        +VG  NVGKS+ INR+++       +   +  PG T  +  +     
Sbjct: 161 -------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG 213

Query: 264 LEFLDSPGIIPMRISDQAAAIK----LAICDDIGERSYDVADVAAILVQMLARIPTV 316
               D+PGII           +    +    +I  R Y + +   +    LAR+  +
Sbjct: 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYI 270

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA--PRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
             G  NVGKS+LI RL  ++        RPGVTR +  +   K+ + +D PG   M    
Sbjct: 6   FAGRSNVGKSTLIYRLTGKK---VRRGKRPGVTRKIIEIE-WKNHKIIDMPGFGFMMGLP 61

Query: 280 QAAAIKLAICDDIG---ERSYDVADVAAILV------QMLARIPTVGITAL 321
           +   ++  I D+I    E +    DVA ++V      +++ R    G   +
Sbjct: 62  K--EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPI 110

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 56.7 bits (138), Expect = 6e-10
 Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 33/112 (29%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEF-------LDS 269
           IVG PNVGKSSL NRLLK+R    A  PGVTR     V++         F       L S
Sbjct: 6   IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET----DRGRFLLVDTGGLWS 61

Query: 270 PGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITAL 321
                 +I ++      A+         + A+V    V    R     +T  
Sbjct: 62  GDKWEKKIQEKV---DRAL---------EDAEVVLFAVD--GR---AELTQA 96

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 193 LSRLAKALASDV-NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251
             +   A    +     + K     ++   ++G   VGKSS +N L+  ++   +P    
Sbjct: 11  FQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE 70

Query: 252 TRV---LKWVRFGKDLEFLDSPGI 272
                 +     G  +  +D+PG+
Sbjct: 71  GLRPVMVSRTMGGFTINIIDTPGL 94

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 215 PRAVRA--GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGKD--LEFLD 268
               R    + G  NVGKSS +N L+ + +   +   G T   V K +       +  +D
Sbjct: 30  DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVD 89

Query: 269 SPGI 272
           +PG+
Sbjct: 90  TPGL 93

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 19/81 (23%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFL--------- 267
           IVG PNVGKS+L N+L+K++        GVTR      ++W        F          
Sbjct: 6   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW----YGKTFKLVDTCGVFD 61

Query: 268 DSPGIIPMRISDQA-AAIKLA 287
           +   II  ++ +     I+ A
Sbjct: 62  NPQDIISQKMKEVTLNMIREA 82

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 33/170 (19%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKR----ILVLNREDMISMADRNAWATYF----- 172
           D+V+ V D +  ++     +  +L  RK     ILV N+ + +   +R      +     
Sbjct: 83  DLVLFVVDGKRGITKEDESLADFL--RKSTVDTILVANKAENLREFEREVKPELYSLGFG 140

Query: 173 ------AKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYP 226
                 A+           + + TM L  + K L  +  +   SK  +  A++  IVG P
Sbjct: 141 EPIPVSAEHN---------INLDTM-LETIIKKLE-EKGLDLESKPEITDAIKVAIVGRP 189

Query: 227 NVGKSSLINRLL-KRRMCPAAPRPGVTR---VLKWVRFGKDLEFLDSPGI 272
           NVGKS+L N +L K R    +P PG TR     +    G+   F+D+ G+
Sbjct: 190 NVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 54.4 bits (132), Expect = 3e-08
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 14/78 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI---- 272
           IVG PNVGKS++ NR+   R+      PGVTR       +W     D   +D+ GI    
Sbjct: 8   IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW--LNYDFNLIDTGGIDIGD 65

Query: 273 --IPMRISDQA-AAIKLA 287
                +I  QA  A+  A
Sbjct: 66  EPFLAQIRQQAEIAMDEA 83

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGKDLEFLDSPG 271
              ++  ++G PNVGKSSL+N +L       +   G TR      +    ++   +D+ G
Sbjct: 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAG 232

Query: 272 I 272
           +
Sbjct: 233 M 233

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 52/360 (14%), Positives = 90/360 (25%), Gaps = 127/360 (35%)

Query: 87  DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI-------------- 132
           + D        + +         +++E+   +   D V      R+              
Sbjct: 32  NFDCKDVQDMPKSIL--------SKEEIDHIIMSKDAVSGTL--RLFWTLLSKQEEMVQK 81

Query: 133 ----PLSTTHP-LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 187
                L   +  LM       +R   +     I   DR              ++++ Q+ 
Sbjct: 82  FVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDR--------------LYNDNQV- 125

Query: 188 MGTMKLSR------LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 241
                +SR      L +AL       R +K +L       I G    GK+ +   +    
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL----RPAKNVL-------IDGVLGSGKTWVALDVCLSY 174

Query: 242 MCPAAPRPGVTRVLKWVRFGKD------LEFL---------------DSPGIIPMRISDQ 280
                    +     W+           LE L               D    I +RI   
Sbjct: 175 KVQCKMDFKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 281 AAAIK-----------LAICDDIGERSYDVADVAA------ILVQMLARIPTVGITALQN 323
            A ++           L +  ++     +     A      IL+           T    
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNV----QNAKAWNAFNLSCKILL----------TT---- 272

Query: 324 RYKIDMDGTCGKTFVQKLALHLFNGDTHQAAFRILTDFRKGKFGWISLERPPRLSLTAVP 383
           R+K   D     T       H     T      +L      K+     +  PR  LT  P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLDCRPQDLPREVLTTNP 327

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272
           ++G   VGKSS +N ++  R+   +P          V     G  L  +D+PG+
Sbjct: 44  VMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGL 97

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRFGKD--LEFLDSPGI 272
            +G   IVG PNVGKS+L+N LL  ++ P +PRP  TR  L+ +       + F+D+PG+
Sbjct: 6   YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65

Query: 273 I 273
            
Sbjct: 66  H 66

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGKD--LEFLDSPG 271
           + G   IVG PNVGKS+L+N LL  ++   +P+ G TR  VL       +  + FLD+PG
Sbjct: 9   KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG 68

Query: 272 II 273
           I 
Sbjct: 69  IY 70

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 16/64 (25%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA---PRPGVTR-VLKWVRFGKDLEFLDSPGIIPMRI 277
           I G PN GKSSL+N L  R    AA      G TR VL+        E +   G +P+ I
Sbjct: 9   IAGRPNAGKSSLLNALAGRE---AAIVTDIAGTTRDVLR--------EHIHIDG-MPLHI 56

Query: 278 SDQA 281
            D A
Sbjct: 57  IDTA 60

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 208 RRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRFGKDLEF 266
           +    + P      + G PNVGKSS +N + +  +         T+ L       K  ++
Sbjct: 20  QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKY 78

Query: 267 --LDSPGII 273
             +D+PG++
Sbjct: 79  QIIDTPGLL 87

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695

 Score = 45.0 bits (105), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 206 VKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKD 263
           +   SK L     R  ++G    GKS+ +N L+   + P+   P  T VL  +R+G +
Sbjct: 58  ITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNP-CTAVLTVLRYGPE 114

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 206 VKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAP--RPGVTRVLKWVRFG 261
           +    K +    +   + G    GKSS IN L         AA      VT      +  
Sbjct: 58  ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP 117

Query: 262 K--DLEFLDSPGIIPMRISDQA--AAIKLAICD 290
              ++ F D PGI             +K    D
Sbjct: 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD 150

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 8/51 (15%)

Query: 192 KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 237
           ++++L K L S     + +++   +  +P     GIVGY N GK+SL N L
Sbjct: 152 RINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTNSGKTSLFNSL 199

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score = 43.2 bits (103), Expect = 7e-05
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
             G   IVG PNVGKS+L+N+LL +++   + +   TR
Sbjct: 7   YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 44

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 216 RAVRAG----IVGYPNVGKSSLINRLLKR 240
             +R G    IVG PNVGKSSL+N   + 
Sbjct: 219 ELLRTGLKVAIVGRPNVGKSSLLNAWSQS 247

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 216 RAVRAG----IVGYPNVGKSSLINRLLKR 240
           R V  G    I G PN GKS+L+N LL +
Sbjct: 228 RIVSEGVSTVIAGKPNAGKSTLLNTLLGQ 256

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 4/29 (13%)

Query: 216 RAVRAG----IVGYPNVGKSSLINRLLKR 240
             +  G    IVG PNVGKS+L+NRLL  
Sbjct: 238 ILLNRGLRMVIVGKPNVGKSTLLNRLLNE 266

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 223 VGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPG 271
           VG  NVGKSSL+N L  R++   +  PG TR + +        F+D PG
Sbjct: 29  VGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPG 77

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 29/71 (40%)

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRP--------------GVTRVLKWVRFGKDLE 265
            G+VG+P+VGKS+L++ +       ++ +P              G+      V       
Sbjct: 161 VGLVGFPSVGKSTLLSVV-------SSAKPKIADYHFTTLVPNLGM------VETDDGRS 207

Query: 266 FL--DSPGIIP 274
           F+  D PG+I 
Sbjct: 208 FVMADLPGLIE 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	383
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	100.0
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	100.0
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.98
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.91
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.83
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.81
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.79
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.77
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.73
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.65
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.58
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.47
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.09
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.09
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.03
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.02
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.01
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.98
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.98
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.97
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.97
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.96
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.96
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.94
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.94
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.91
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.9
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.9
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.88
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.87
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.87
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.85
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.85
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.84
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.83
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.82
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.82
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.79
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.79
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.78
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.76
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.74
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.74
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.73
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.73
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.72
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.69
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.68
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.66
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.66
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.63
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.63
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.59
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.56
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.55
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.54
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.54
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.54
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.53
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.53
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.53
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.52
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.52
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.5
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.49
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.49
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.48
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.47
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.47
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.47
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.47
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.46
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.46
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.46
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.45
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.45
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.44
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.44
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.44
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.43
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.43
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.43
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.43
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.43
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.42
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.42
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.42
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.42
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.42
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.41
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.41
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.41
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.41
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.4
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.4
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.4
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.4
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.39
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.39
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.39
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.38
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.38
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.38
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.37
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.37
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.37
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.36
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.35
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.35
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.35
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.34
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.34
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.33
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.33
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.32
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.32
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.32
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.32
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.31
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.31
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.31
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.31
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.3
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.3
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.3
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.3
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.3
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.3
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.29
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.29
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.28
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.28
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.27
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.27
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.26
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.25
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.25
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.24
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.24
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.24
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.24
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.24
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.24
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.23
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.23
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.22
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.22
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.22
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.22
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.21
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.2
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.2
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.19
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.19
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.18
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.18
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.17
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.17
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.16
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.14
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.14
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.14
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.13
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.13
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.13
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.13
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.12
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.12
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.12
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.12
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.12
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.11
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.11
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.11
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.1
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.1
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.1
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.1
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.09
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.07
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.07
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.07
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.06
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.06
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.05
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.05
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.05
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.05
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.05
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.04
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.04
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.01
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.01
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.01
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.0
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.99
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.99
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.99
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.99
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.98
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.98
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.98
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.97
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.97
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.97
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.22
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.97
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.96
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.96
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.95
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.95
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.95
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.94
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.94
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.93
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.93
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.93
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.92
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.91
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.9
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.9
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.9
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.89
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.89
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.89
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.88
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.88
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.88
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.87
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.87
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.87
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.86
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.86
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.86
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.86
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.86
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.86
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.86
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.85
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.85
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.85
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.84
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.84
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.83
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.83
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.83
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.83
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.83
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.81
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.81
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.81
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.8
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.8
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.8
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.8
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.8
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	97.8
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.79
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.79
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.79
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.79
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.78
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.77
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.77
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.76
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.76
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.76
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.76
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.75
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.75
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.75
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.73
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.72
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.72
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.72
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	97.71
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.89
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.71
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.7
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.7
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	97.69
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.68
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.67
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.67
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.67
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.66
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.66
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.65
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.65
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.65
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.65
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.65
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.64
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	97.63
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.63
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.61
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.61
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.61
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.6
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.59
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.59
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.57
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.57
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.56
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.55
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.55
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.55
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.53
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.5
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.5
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.49
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.48
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.48
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.48
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.47
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.46
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.46
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.46
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.42
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.41
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.38
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.37
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.37
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.36
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.36
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.35
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.35
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.33
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.32
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.32
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.32
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	97.32
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.31
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.31
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.28
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.28
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.27
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.27
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.23
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.22
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.21
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.15
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.14
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.14
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.13
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.1
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.06
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.04
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.03
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	96.98
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.93
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.9
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.84
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.79
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	96.78
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	96.76
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	96.72
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.71
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.67
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.66
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.65
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.51
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.5
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.4
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	96.4
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	96.34
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.33
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.28
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	96.27
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	96.24
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.13
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	96.08
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.02
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.99
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.92
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.87
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	95.86
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	95.79
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.73
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.68
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	95.67
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.56
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.53
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.47
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.23
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	95.23
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.19
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	95.19
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.11
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.08
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	95.07
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.02
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	94.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	94.69
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.67
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.65
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.56
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.48
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	94.42
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.42
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.41
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.3
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	94.27
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.24
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	94.23
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.14
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.14
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.09
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.05
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.01
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	94.0
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	93.98
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	93.98
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	93.95
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	93.91
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.86
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.82
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	93.79
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	93.73
1g6h_A	257	High-affinity branched-chain amino acid transport	93.72
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.7
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.67
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.65
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.63
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	93.63
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.62
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.62
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	93.62
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	93.6
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.6
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.59
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.58
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	93.57
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.52
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.52
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	93.51
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	93.45
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.44
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.43
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.41
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.39
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.38
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.37
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.3
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	93.29
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.28
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.27
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	93.25
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.25
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.24
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	93.24
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	93.23
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	93.23
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	93.22
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	93.21
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.19
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	93.18
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	93.14
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	93.1
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	93.07
2xxa_A	433	Signal recognition particle protein; protein trans	92.98
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	92.95
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	92.95
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	92.94
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	92.93
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.9
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	92.83
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.77
4a74_A	231	DNA repair and recombination protein RADA; hydrola	92.69
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	92.68
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.65
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	92.59
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	92.53
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	92.52
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	92.46
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	92.46
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	92.43
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	92.42
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	92.32
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	92.31
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	92.24
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	92.23

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-54  Score=412.58  Aligned_cols=273  Identities=35%  Similarity=0.624  Sum_probs=226.4

Q ss_pred             cCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeE
Q 016762          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV  179 (383)
Q Consensus       100 ~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~v  179 (383)
                      +|||||||.++.+++.+.++++|+|++|+|+|+|.++.++.+++++.++|+++|+||+||++.+..+.|.+++++.|..+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~   82 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS   82 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence            89999999999999999999999999999999999999999999999999999999999999888889999998778889


Q ss_pred             EEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE
Q 016762          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR  259 (383)
Q Consensus       180 i~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~  259 (383)
                      +++|++++.|+.+|.+.+.++........+.++.....++|++||+||||||||||+|++++.+.+++.||+|++.+++.
T Consensus        83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~  162 (282)
T 1puj_A           83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK  162 (282)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE
T ss_pred             EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE
Confidence            99999999999999887776654433222333444567899999999999999999999998889999999999999988


Q ss_pred             eCCcEEEEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHH
Q 016762          260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ  339 (383)
Q Consensus       260 ~~~~i~l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~  339 (383)
                      ++.++.|+|||||+++...+.+.++++++++++++..++.++++.++++.+++.   +++.|..+|+++....+..+|++
T Consensus       163 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~y~~~~~~~~~~~~l~  239 (282)
T 1puj_A          163 VGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH---YPERLKERYGLDEIPEDIAELFD  239 (282)
T ss_dssp             ETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHH---CHHHHHHHTTCSSCCSSHHHHHH
T ss_pred             eCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHh---ChHHHHHHcCCCCCCCCHHHHHH
Confidence            888999999999999888888888999999999988999999999999999886   67889999999743356889999


Q ss_pred             HHHHHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCC
Q 016762          340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPP  375 (383)
Q Consensus       340 ~~a~~~----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp  375 (383)
                      .+|++.    +||  |+++||+.||+|||+||||+||||.|+
T Consensus       240 ~~a~~~g~~~kgg~~d~~~aa~~~l~d~~~Gklg~~~l~~~~  281 (282)
T 1puj_A          240 AIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQPT  281 (282)
T ss_dssp             HHHHHHTCBCSTTCBCHHHHHHHHHHHHHTTTTCSCCSCCCC
T ss_pred             HHHHHhCCcccCCcccHHHHHHHHHHHHHcCCCCceECCCCC
Confidence            999874    455  999999999999999999999999865

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=100.00  E-value=3.5e-47  Score=358.97  Aligned_cols=244  Identities=31%  Similarity=0.550  Sum_probs=192.1

Q ss_pred             CCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEE
Q 016762          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI  180 (383)
Q Consensus       101 qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi  180 (383)
                      |||||||.++.+++.+.++++|+|++|+|+|+|.++.++.++ ++ ++|+++|+||+||++.+..+.|.+++++.|..+ 
T Consensus         2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-   78 (262)
T 3cnl_A            2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-   78 (262)
T ss_dssp             -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred             CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence            899999999999999999999999999999999999988777 66 899999999999999888889999998888888 


Q ss_pred             EeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe
Q 016762          181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF  260 (383)
Q Consensus       181 ~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~  260 (383)
                      ++|++++.|+.+|.+.++++.                .++++||+||||||||+|+|.++..+.+++.||+|++.+++.+
T Consensus        79 ~iSa~~~~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~  142 (262)
T 3cnl_A           79 ITTHKGEPRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL  142 (262)
T ss_dssp             EECCTTSCHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC
T ss_pred             EEECCCCcCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe
Confidence            999999999887755432221                4799999999999999999999887789999999999999888


Q ss_pred             CCcEEEEecCccccCCC-CcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHH
Q 016762          261 GKDLEFLDSPGIIPMRI-SDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ  339 (383)
Q Consensus       261 ~~~i~l~DTpG~i~~~~-~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~  339 (383)
                      +.++.++||||+..+.. .+.+.+         .+..++.++++.++++.++++   +++.+..+|+++.  .+ .+|++
T Consensus       143 ~~~~~l~DtpG~~~~~~~~~~~~~---------~~~~~d~~~~~~~~~~~l~~~---~~~~l~~~y~i~~--~d-~~~l~  207 (262)
T 3cnl_A          143 ENGVKILDTPGILYKNIFSEDLAA---------KLLLVGSLPVERIEDQRIFER---AFEIFARSIGIES--SF-SEFFE  207 (262)
T ss_dssp             TTSCEEESSCEECCCCCCSHHHHH---------HHHHTTSSCGGGCCCHHHHHH---HHHHHHHHHTCCC--CH-HHHHH
T ss_pred             CCCEEEEECCCcccCcCCCChhhc---------ccccCCHHHHHHHHHHHHHHh---CHHHHHHHcCcCC--Cc-HHHHH
Confidence            88999999999998877 666554         123345556777777777764   5677899999984  23 78999


Q ss_pred             HHHHHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCCCCC
Q 016762          340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPPRLS  378 (383)
Q Consensus       340 ~~a~~~----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~pp~~~  378 (383)
                      .+|++.    ++|  |+++||+.||+||++|+||+||||.|+.+.
T Consensus       208 ~ia~~~g~~~kgg~~d~~~aa~~~l~d~~~g~l~~~~l~~~~~~~  252 (262)
T 3cnl_A          208 DFARKRGLLKKGGVPDIERALMLFFTEVAQGKAGRVSFERPEDIT  252 (262)
T ss_dssp             HHHHHTTCBCGGGCBCHHHHHHHHHHHHHTTTTCSCCSCCTTCC-
T ss_pred             HHHHHhCCccCCCcccHHHHHHHHHHHHHcCCCCceECCCCcccc
Confidence            999874    345  999999999999999999999999887654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.98  E-value=6.7e-35  Score=287.21  Aligned_cols=217  Identities=18%  Similarity=0.126  Sum_probs=141.9

Q ss_pred             cccchhHHHhhcCCee--eEEeecCCCCCCCccccchhhhccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH--HHhh
Q 016762           44 SLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK--DQLK  119 (383)
Q Consensus        44 ~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~iG~Gk~E~~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~--~~id  119 (383)
                      +|.|+..||+|||++|  .++|+| +|||+||||+||+|++.+..++|+||||++|+|.|     .+|+++.+.  +++|
T Consensus        12 ~~~e~~~l~~~~~~~~~~~~~~~~-~~~~~~~~g~gk~~e~~~~~~~~~v~~~~~l~p~q-----~~~l~~~~~~~~v~d   85 (364)
T 2qtf_A           12 FEEEAIALVEGANYKVTSIYKLPK-SPNVKFYIQYDKLQQIKNDEEISTLIIFEQLKPRH-----FINIRRELKGKEVLD   85 (364)
T ss_dssp             THHHHHHHHHHTTEEEEEEECCCS-SCBTTTBSCHHHHHHHHTCTTCCEEEESSCCCHHH-----HHHHHHHHTTCEEEC
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEcc-CCCCcceechhHHHHHhhccCCCEEEECCCCCHHH-----HHHHHHHhCCCceee
Confidence            8999999999999999  899998 99999999999998866689999999999999999     999999998  7999


Q ss_pred             hcCeEEEEEecCCCCCC-C-cHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh-----
Q 016762          120 LMDVVIEVRDARIPLST-T-HPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK-----  192 (383)
Q Consensus       120 r~DlILeV~DaR~p~~~-~-~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~-----  192 (383)
                      ++|+||+|||+|++..+ . ++++.++.+.+|++              ..|..+++..+ .+    +..|.|..+     
T Consensus        86 r~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl--------------~~~~~l~~~~~-~i----~~~g~ge~~~e~~~  146 (364)
T 2qtf_A           86 KILLLLEIFALHAGSKEAKMQIELARLKYELPII--------------KETYTKSKIGE-QQ----GPLGAGTYGVESTI  146 (364)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH--------------HHC--------------------------CHH
T ss_pred             hHhHHHHHHHhhCcccchhHHHHHHHHhhhchhh--------------hhhhHHHHhcC-CC----CcCCcCHHHHHHHH
Confidence            99999999999999877 4 56677766654433              35644443322 22    112333322     


Q ss_pred             --hhHHHHHhhhhh-------hhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-
Q 016762          193 --LSRLAKALASDV-------NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-  260 (383)
Q Consensus       193 --L~~~l~~l~~~~-------~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-  260 (383)
                        +.+.+..+....       ...+..+. ......|++||+||||||||+|+|++.. ..+++.+|+|+|..  .+.+ 
T Consensus       147 ~~~~~~i~~l~~~l~~~~~~r~~~r~~r~-~~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~  224 (364)
T 2qtf_A          147 KFYKRRINKLMKELESIKIFKEKSIESNK-RNNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPIN  224 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--------------CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEEC
Confidence              222222222211       11111111 1122349999999999999999999876 57889999999864  3444 


Q ss_pred             CCcEEEEecCccccCCCCcHHHHHHHH
Q 016762          261 GKDLEFLDSPGIIPMRISDQAAAIKLA  287 (383)
Q Consensus       261 ~~~i~l~DTpG~i~~~~~~~~~~~~la  287 (383)
                      +..+.++||||+++..+++..++++..
T Consensus       225 g~~v~l~DT~G~i~~lp~~lve~f~~t  251 (364)
T 2qtf_A          225 NRKIMLVDTVGFIRGIPPQIVDAFFVT  251 (364)
T ss_dssp             TEEEEEEECCCBCSSCCGGGHHHHHHH
T ss_pred             CEEEEEEeCCCchhcCCHHHHHHHHHH
Confidence            457889999999987666766666533

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.91  E-value=4.1e-24  Score=210.74  Aligned_cols=155  Identities=21%  Similarity=0.269  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCH----HHHHHHHHH-HHHcCC---e
Q 016762          107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATY-FAKQGT---K  178 (383)
Q Consensus       107 ~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~----~~~~~w~~~-l~~~g~---~  178 (383)
                      .+.+.+.+..+.+++++|++|+|++++.++...++.+++.++|+++|+||+||++.    +....|... +++.|.   .
T Consensus        58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~  137 (369)
T 3ec1_A           58 DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVD  137 (369)
T ss_dssp             -CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSE
T ss_pred             HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCccc
Confidence            45677777788899999999999999998888889998889999999999999875    345667654 455665   6


Q ss_pred             EEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcC-----CccccCCCCCcee
Q 016762          179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTR  253 (383)
Q Consensus       179 vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~-----~~~~v~~~pgtT~  253 (383)
                      ++++|+++|.|+.+|.+.+.++..              ..+|+++|+||||||||+|+|++.     ..+.+++.||||+
T Consensus       138 v~~iSA~~g~gi~~L~~~I~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~  203 (369)
T 3ec1_A          138 VCLVSAAKGIGMAKVMEAINRYRE--------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL  203 (369)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHT--------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc--------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE
Confidence            889999999999998877765531              125999999999999999999986     5677899999999


Q ss_pred             EEEEEEeCCcEEEEecCccccC
Q 016762          254 VLKWVRFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       254 ~~~~~~~~~~i~l~DTpG~i~~  275 (383)
                      +...+.++.++.++|||||..+
T Consensus       204 ~~~~~~~~~~~~liDtPG~~~~  225 (369)
T 3ec1_A          204 DMIEIPLESGATLYDTPGIINH  225 (369)
T ss_dssp             EEEEEECSTTCEEEECCSCCCC
T ss_pred             eeEEEEeCCCeEEEeCCCcCcH
Confidence            9998888888999999999865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.90  E-value=1.3e-23  Score=207.00  Aligned_cols=154  Identities=26%  Similarity=0.363  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH----HHHHHHHH-HHHcCC---eE
Q 016762          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV  179 (383)
Q Consensus       108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~----~~~~w~~~-l~~~g~---~v  179 (383)
                      +.+.+.+.++.+.+|+|++|+|++++..+...++.+++.++|+++|+||+||.+..    ....|... +++.|.   .+
T Consensus        57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v  136 (368)
T 3h2y_A           57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV  136 (368)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred             HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence            55666677777888899999999998877777888888899999999999998654    45677654 455665   78


Q ss_pred             EEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCC------ccccCCCCCcee
Q 016762          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTR  253 (383)
Q Consensus       180 i~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~------~~~v~~~pgtT~  253 (383)
                      +++|+++|.|+++|.+.+.++..              ..+|+++|+||||||||+|+|++..      ...+++.||||+
T Consensus       137 ~~iSA~~g~gi~~L~~~l~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~  202 (368)
T 3h2y_A          137 FLISAAKGQGIAELADAIEYYRG--------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL  202 (368)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHT--------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----
T ss_pred             EEEeCCCCcCHHHHHhhhhhhcc--------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec
Confidence            99999999999998877765431              1359999999999999999999853      445789999999


Q ss_pred             EEEEEEeCCcEEEEecCccccC
Q 016762          254 VLKWVRFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       254 ~~~~~~~~~~i~l~DTpG~i~~  275 (383)
                      +...+.++.++.++|||||..+
T Consensus       203 ~~~~~~~~~~~~liDtPG~~~~  224 (368)
T 3h2y_A          203 DLIDIPLDEESSLYDTPGIINH  224 (368)
T ss_dssp             CEEEEESSSSCEEEECCCBCCT
T ss_pred             ceEEEEecCCeEEEeCCCcCcH
Confidence            9999888888999999999865

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.83  E-value=3.2e-20  Score=186.89  Aligned_cols=184  Identities=21%  Similarity=0.258  Sum_probs=122.6

Q ss_pred             CCcEEEEcCCCCCcCCCc--hHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCH
Q 016762           87 DADLYYWTKSLRPVQWYP--GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM  162 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~P--gh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~  162 (383)
                      +..+.+||......  +.  +....+.++....++.+|+||+|+|++.+.+..+..+..++.  ++|+++|+||+|+...
T Consensus        48 ~~~~~l~DT~G~~~--~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~  125 (439)
T 1mky_A           48 GKTFKLVDTCGVFD--NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE  125 (439)
T ss_dssp             TEEEEEEECTTTTS--SGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH
T ss_pred             CeEEEEEECCCccc--cccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence            34577888654211  10  012445566677899999999999999888877777777664  7999999999998643


Q ss_pred             HHHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCC
Q 016762          163 ADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       163 ~~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      .....+.++ .+.|. .++++|+++|.|+.+|.+.+.+..................++|++||.||||||||+|+|++..
T Consensus       126 ~~~~~~~~~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          126 FEREVKPEL-YSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             HHHHTHHHH-GGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             cHHHHHHHH-HhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            122222233 35564 6889999999999998766544332211000000012346899999999999999999999987


Q ss_pred             ccccCCCCCceeEEE--EEEe-CCcEEEEecCccc
Q 016762          242 MCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       242 ~~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i  273 (383)
                      ...+++.||+|++..  .+.+ +..+.++||||+.
T Consensus       205 ~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~  239 (439)
T 1mky_A          205 RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR  239 (439)
T ss_dssp             TEEECCCC------CCEEEEETTEEEEESSCSCC-
T ss_pred             ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCc
Confidence            778999999999864  2333 4578899999985

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.81  E-value=2.7e-20  Score=187.24  Aligned_cols=181  Identities=18%  Similarity=0.225  Sum_probs=116.0

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD  164 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~  164 (383)
                      +.++.+||....... -.+....+..+....++.+|+||+|+|++.+.+..+.++..++.  ++|+++|+||+|+.+...
T Consensus        50 ~~~~~l~DT~G~~~~-~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~  128 (436)
T 2hjg_A           50 NYDFNLIDTGGIDIG-DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA  128 (436)
T ss_dssp             SSCCEEEC----------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----
T ss_pred             CceEEEEECCCCCCc-chhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh
Confidence            456778884322100 00012355566667899999999999999988877777777664  789999999999975421


Q ss_pred             HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc
Q 016762          165 RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC  243 (383)
Q Consensus       165 ~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~  243 (383)
                        ...+ +.+.|. .++++|+++|.|+.+|.+.+.+......    ........++|++||.||||||||+|+|++....
T Consensus       129 --~~~~-~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~  201 (436)
T 2hjg_A          129 --NIYD-FYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERV  201 (436)
T ss_dssp             --CCCS-SGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred             --hHHH-HHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccc----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCce
Confidence              1111 224453 6889999999999998776655432211    0011234689999999999999999999998877


Q ss_pred             ccCCCCCceeEEEE--EEe-CCcEEEEecCccccC
Q 016762          244 PAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       244 ~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~~  275 (383)
                      .+++.+|||++...  +.. +..+.|+||||+...
T Consensus       202 ~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~  236 (436)
T 2hjg_A          202 IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK  236 (436)
T ss_dssp             EEC---------CCEEEEETTEEEEETTHHHHTCB
T ss_pred             eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcC
Confidence            79999999999642  233 457999999999643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.79  E-value=7e-20  Score=175.67  Aligned_cols=140  Identities=21%  Similarity=0.253  Sum_probs=107.4

Q ss_pred             HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH----HHHHHHHHHHcCCeEEEeeCcCC
Q 016762          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLG  187 (383)
Q Consensus       117 ~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~----~~~w~~~l~~~g~~vi~iSa~~g  187 (383)
                      .+.++|+|++|+|+++|..+.+ .+++++     .+++.++|+||+||++..+    ++.|.++|++.|+.++++|+.++
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~  161 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ  161 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            6899999999999999998887 788776     4789999999999998754    68899999888999999999999


Q ss_pred             CchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCC-------CceeEEEEEEe
Q 016762          188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRF  260 (383)
Q Consensus       188 ~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~  260 (383)
                      .|+++|.+..+                  .-.++|+|.+|||||||+|+|.+.....++...       ++|++.++++.
T Consensus       162 ~g~~~L~~~~~------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~  223 (307)
T 1t9h_A          162 DSLADIIPHFQ------------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT  223 (307)
T ss_dssp             TTCTTTGGGGT------------------TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred             CCHHHHHhhcC------------------CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence            99877654321                  125899999999999999999987655555554       57777666666


Q ss_pred             CCcEEEEecCccccCC
Q 016762          261 GKDLEFLDSPGIIPMR  276 (383)
Q Consensus       261 ~~~i~l~DTpG~i~~~  276 (383)
                      . ..+++||||+....
T Consensus       224 ~-~g~v~dtpg~~~~~  238 (307)
T 1t9h_A          224 S-GGLVADTPGFSSLE  238 (307)
T ss_dssp             T-TEEEESSCSCSSCC
T ss_pred             C-CEEEecCCCccccc
Confidence            5 56899999998643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.77  E-value=4.6e-19  Score=179.24  Aligned_cols=182  Identities=18%  Similarity=0.247  Sum_probs=119.3

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHH
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA  163 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~  163 (383)
                      .+..+.+||..--... -.+.+..+.+.....++.+|+||+|+|++.+....+.++.+++.  ++|+++|+||+|+....
T Consensus        69 ~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~  147 (456)
T 4dcu_A           69 LNYDFNLIDTGGIDIG-DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR  147 (456)
T ss_dssp             CSSCCEEECCCC-------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC------
T ss_pred             CCceEEEEECCCCCCc-chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh
Confidence            3456778875431100 00013666677778899999999999999988888878877775  78999999999987542


Q ss_pred             HHHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCc
Q 016762          164 DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM  242 (383)
Q Consensus       164 ~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~  242 (383)
                        ..+.+++ ..| ..++++|+++|.|+.+|.+.+.+......    .........+|+++|.||||||||+|+|++...
T Consensus       148 --~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~  220 (456)
T 4dcu_A          148 --ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEER  220 (456)
T ss_dssp             -----CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             --hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccccc----ccccccccceeEEecCCCCCHHHHHHHHhCCCc
Confidence              1222222 344 45778999999999988766654332111    111123568999999999999999999998877


Q ss_pred             cccCCCCCceeEEE--EEEe-CCcEEEEecCccccC
Q 016762          243 CPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       243 ~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i~~  275 (383)
                      ..+++.+|+|++..  .+.. +..+.++||||+...
T Consensus       221 ~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~  256 (456)
T 4dcu_A          221 VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK  256 (456)
T ss_dssp             EEECC------CTTSEEEEETTEEEEETTGGGTTTB
T ss_pred             cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcC
Confidence            88999999999952  3333 457899999998753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.73  E-value=1.7e-17  Score=159.17  Aligned_cols=138  Identities=23%  Similarity=0.356  Sum_probs=106.5

Q ss_pred             HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCCeEEEeeCcCCC
Q 016762          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM  188 (383)
Q Consensus       117 ~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~l~~~g~~vi~iSa~~g~  188 (383)
                      .+..+|+++.|+|++.|..+.+ .+.+++     .+.|.++|+||+||.+..+   ...|.+++++.|..++++|+++|.
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~  154 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE  154 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence            6899999999999998864443 344443     4789999999999998752   567777787788899999999999


Q ss_pred             chhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-------ceeEEEEEEeC
Q 016762          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFG  261 (383)
Q Consensus       189 Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~~  261 (383)
                      |+++|.+.+.                  ...++++|.+|||||||+|+|. .....++....       +|+....+...
T Consensus       155 gi~~L~~~l~------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~  215 (302)
T 2yv5_A          155 GIDELVDYLE------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFG  215 (302)
T ss_dssp             THHHHHHHTT------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEET
T ss_pred             CHHHHHhhcc------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcC
Confidence            9888755421                  1248999999999999999999 66555665554       67766666655


Q ss_pred             CcEEEEecCcccc
Q 016762          262 KDLEFLDSPGIIP  274 (383)
Q Consensus       262 ~~i~l~DTpG~i~  274 (383)
                      ...+++||||+..
T Consensus       216 ~~g~v~d~pg~~~  228 (302)
T 2yv5_A          216 KGSFVGDTPGFSK  228 (302)
T ss_dssp             TTEEEESSCCCSS
T ss_pred             CCcEEEECcCcCc
Confidence            5678999999963

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.73  E-value=1e-17  Score=163.65  Aligned_cols=141  Identities=23%  Similarity=0.331  Sum_probs=108.2

Q ss_pred             HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCCeEEEeeCcC
Q 016762          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQL  186 (383)
Q Consensus       115 ~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~l~~~g~~vi~iSa~~  186 (383)
                      +.++.++|+|+.| |++.|..+.+ .+++++     .+++.++|+||+||++.+.   ...|..+|...|+.++++|+.+
T Consensus       125 ~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          125 KPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3457999999955 7788877766 577775     4788999999999998765   6789999998999999999999


Q ss_pred             CCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCc-cccCCCC---C----ceeEEEEE
Q 016762          187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRP---G----VTRVLKWV  258 (383)
Q Consensus       187 g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~p---g----tT~~~~~~  258 (383)
                      +.|+..|...+    .              .-.++|+|.+|||||||||.|.+... ..++...   |    +|+..+..
T Consensus       203 ~~gl~~L~~~~----~--------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~  264 (358)
T 2rcn_A          203 QDGLKPLEEAL----T--------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLY  264 (358)
T ss_dssp             TBTHHHHHHHH----T--------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEE
T ss_pred             CcCHHHHHHhc----C--------------CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEE
Confidence            99987775432    0              12589999999999999999998765 5555443   3    56666677


Q ss_pred             EeCCcEEEEecCccccC
Q 016762          259 RFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       259 ~~~~~i~l~DTpG~i~~  275 (383)
                      .+..+..++||||+...
T Consensus       265 ~v~q~~~l~dtpgv~e~  281 (358)
T 2rcn_A          265 HFPHGGDVIDSPGVREF  281 (358)
T ss_dssp             ECTTSCEEEECHHHHTC
T ss_pred             EECCCCEecCcccHHHh
Confidence            77667789999999754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.65  E-value=2.8e-16  Score=150.49  Aligned_cols=142  Identities=22%  Similarity=0.357  Sum_probs=101.5

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHH---HHHHHHHHHHcCCeEEEeeCcCC
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLG  187 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~l~~~g~~vi~iSa~~g  187 (383)
                      ..+..+|++++|+|++++..+.+ .+..++     .+.|+++|+||+||.+...   ...|.+.+... ..++++|+++|
T Consensus        80 ~~~~~ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg  157 (301)
T 1u0l_A           80 PHVANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTG  157 (301)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred             cccccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCC
Confidence            46899999999999998864432 344443     3789999999999987654   45566555433 77899999999


Q ss_pred             CchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-------ceeEEEEEEe
Q 016762          188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRF  260 (383)
Q Consensus       188 ~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------tT~~~~~~~~  260 (383)
                      .|+.++...+.                  .-.++++|.+|+|||||+|+|.+.....++....       +|+..+.+++
T Consensus       158 ~gv~~lf~~l~------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~  219 (301)
T 1u0l_A          158 MGIEELKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF  219 (301)
T ss_dssp             TTHHHHHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC
T ss_pred             cCHHHHHHHhc------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEc
Confidence            99887754421                  1148999999999999999999866555554443       5665555555


Q ss_pred             CCcEEEEecCccccCCC
Q 016762          261 GKDLEFLDSPGIIPMRI  277 (383)
Q Consensus       261 ~~~i~l~DTpG~i~~~~  277 (383)
                      ....+++||||+....+
T Consensus       220 ~~~g~v~q~p~~~~~~~  236 (301)
T 1u0l_A          220 DFGGYVVDTPGFANLEI  236 (301)
T ss_dssp             TTSCEEESSCSSTTCCC
T ss_pred             CCCCEEEECcCCCccCC
Confidence            55568999999875543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.58  E-value=8.3e-17  Score=157.66  Aligned_cols=156  Identities=19%  Similarity=0.146  Sum_probs=109.3

Q ss_pred             CeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHHHHHHHHHHHH-c-CCeEEEeeCcCCCchhhhhH
Q 016762          122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       122 DlILeV~DaR~p~~~~~~~l~~~l----~~k~~ilVlNK~DL~~~~~~~~w~~~l~~-~-g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      |.+-.|++++.+.++.++.++++.    ..+++++++||+|++++...+.|.+|++. . +.....++...+.+..++.+
T Consensus        59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  138 (357)
T 2e87_A           59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS  138 (357)
T ss_dssp             HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            455567788878788888887776    67888899999999999999999999876 3 43332233333344444444


Q ss_pred             HHHHhhhh-------hhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEE
Q 016762          196 LAKALASD-------VNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLE  265 (383)
Q Consensus       196 ~l~~l~~~-------~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~  265 (383)
                      .++++...       +...++.+.......+|+++|+||||||||+|+|++.. ..+++.||+|++.+...+   +..+.
T Consensus       139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~  217 (357)
T 2e87_A          139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQ  217 (357)
T ss_dssp             HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEE
Confidence            43333221       11222222222456789999999999999999999876 667889999999876554   34589


Q ss_pred             EEecCccccCCCC
Q 016762          266 FLDSPGIIPMRIS  278 (383)
Q Consensus       266 l~DTpG~i~~~~~  278 (383)
                      ++||||+......
T Consensus       218 l~Dt~G~~~~~~~  230 (357)
T 2e87_A          218 IIDTPGLLDRPIS  230 (357)
T ss_dssp             EEECTTTSSSCST
T ss_pred             EEeCCCccccchh
Confidence            9999999875543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.47  E-value=4e-14  Score=139.18  Aligned_cols=59  Identities=37%  Similarity=0.576  Sum_probs=50.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~~  275 (383)
                      ...+|+|||+||||||||||+|++.+ +.+++.||||+++..  +.. +..+.++||||++..
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~  132 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG  132 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence            34689999999999999999999876 789999999999754  333 567999999999864

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.09  E-value=4.7e-11  Score=121.07  Aligned_cols=59  Identities=31%  Similarity=0.400  Sum_probs=29.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~  274 (383)
                      ..++|+++|+||||||||+|+|++.....+++.||||++...  +.+ +..+.++||||+..
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~  293 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE  293 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence            457899999999999999999999877789999999999743  333 45789999999964

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.09  E-value=2.5e-11  Score=123.18  Aligned_cols=58  Identities=40%  Similarity=0.583  Sum_probs=49.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|++||+||||||||+|+|++.+...+++.||||++..  .+.+ +..+.++||||+.
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~  302 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR  302 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence            35789999999999999999999987778999999999963  3344 4578999999997

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.03  E-value=8.7e-11  Score=117.93  Aligned_cols=56  Identities=38%  Similarity=0.574  Sum_probs=35.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~  274 (383)
                      +|++||.||||||||+|+|++++...+++.||+|++....  .. +..+.++||||+..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~   61 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD   61 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence            6999999999999999999988767789999999996433  33 55789999999874

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.02  E-value=2.3e-10  Score=109.34  Aligned_cols=58  Identities=40%  Similarity=0.599  Sum_probs=48.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i~~  275 (383)
                      .+|++||.||||||||+|+|++.+...+++.|+||++....  .. +..+.++||||+..+
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~   68 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP   68 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence            36999999999999999999998877789999999985431  12 446889999999754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.98  E-value=4.2e-10  Score=105.93  Aligned_cols=58  Identities=31%  Similarity=0.513  Sum_probs=49.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      .++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+   +..+.++||||+...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~   63 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL   63 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcc
Confidence            4689999999999999999999876 689999999998754333   567899999999754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.98  E-value=8.8e-11  Score=118.61  Aligned_cols=59  Identities=36%  Similarity=0.510  Sum_probs=44.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-CCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i~  274 (383)
                      ..++|+++|+||||||||+|+|++.....+++.||+|++..  .+.+ +..+.++||||+..
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~  284 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE  284 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence            45789999999999999999999887777999999999963  3333 45789999999954

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.97  E-value=5.4e-10  Score=98.25  Aligned_cols=61  Identities=33%  Similarity=0.588  Sum_probs=43.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCccccCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR  276 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~  276 (383)
                      ..++|+++|.+|||||||+|+|++.. ...+++.+|+|++......+.++.++||||+....
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~   83 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK   83 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccc
Confidence            45789999999999999999999875 45678899999998888888899999999986543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.97  E-value=1.9e-09  Score=94.34  Aligned_cols=61  Identities=33%  Similarity=0.494  Sum_probs=53.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccccCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR  276 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~  276 (383)
                      ..++|+++|.+|||||||+|+|++.....+++.+|+|++......+..+.++||||+....
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~   82 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAK   82 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCcccc
Confidence            3468999999999999999999988767788999999999888888899999999986543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.96  E-value=4.5e-10  Score=101.18  Aligned_cols=60  Identities=27%  Similarity=0.390  Sum_probs=51.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeC----CcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~----~~i~l~DTpG~i~~  275 (383)
                      ..++|+++|.+|||||||+|+|++.. ...+++.+|+|++.....+.    ..+.|+||||+...
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   92 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA   92 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence            35689999999999999999999876 45789999999998776664    67999999998654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.96  E-value=5.5e-10  Score=106.91  Aligned_cols=60  Identities=38%  Similarity=0.594  Sum_probs=49.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e--CCcEEEEecCccccCC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F--GKDLEFLDSPGIIPMR  276 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~--~~~i~l~DTpG~i~~~  276 (383)
                      +-.|+++|.||||||||+|+|++.+...+++.|++|++.....  .  +..+.++||||+..+.
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~   73 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK   73 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence            3469999999999999999999988777899999999854322  2  3468999999998654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.96  E-value=6.8e-10  Score=96.55  Aligned_cols=58  Identities=31%  Similarity=0.471  Sum_probs=47.5

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC-CcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-KDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~-~~i~l~DTpG~i~  274 (383)
                      ..+|+++|.+|||||||+|+|++.....+++.||+|++..  .+.++ ..+.++||||+..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~   64 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE   64 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence            4689999999999999999999876556788999998853  34443 4688999999964

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.94  E-value=5.8e-10  Score=104.01  Aligned_cols=57  Identities=32%  Similarity=0.441  Sum_probs=47.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCccccCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMR  276 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~~~  276 (383)
                      +|+++|.||||||||+|+|++.. ..+++.||+|.+.....  . +..+.++||||+....
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~   62 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV   62 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence            69999999999999999999875 67999999998865433  3 4568999999997544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.94  E-value=3e-10  Score=113.94  Aligned_cols=57  Identities=37%  Similarity=0.539  Sum_probs=34.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      ++|++||.||||||||+|+|++.....+++.||+|++......   +..+.++||||+..
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~   63 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI   63 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence            4799999999999999999999877779999999999776554   45799999999974

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.91  E-value=2e-09  Score=100.73  Aligned_cols=60  Identities=27%  Similarity=0.388  Sum_probs=50.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      ..++|+++|.+|||||||+|+|++.....+++.+++|.+.....+   +..+.++||||+...
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~  100 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG  100 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence            357899999999999999999998876778889999987655443   346899999999754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.90  E-value=1.8e-09  Score=98.95  Aligned_cols=62  Identities=24%  Similarity=0.391  Sum_probs=42.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCC--CceeEEEEEE--e-CCcEEEEecCccccCCCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVR--F-GKDLEFLDSPGIIPMRIS  278 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--gtT~~~~~~~--~-~~~i~l~DTpG~i~~~~~  278 (383)
                      ..++|+++|.+|||||||+|+|++... ..+..+  ++|++.....  . +..+.|+||||+......
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~   94 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP   94 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC
Confidence            457899999999999999999998764 455555  7888765433  3 457999999999865443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.90  E-value=2.2e-09  Score=100.08  Aligned_cols=60  Identities=23%  Similarity=0.377  Sum_probs=49.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      ..++|+++|.+|||||||+|+|++.....+++.+++|.+.....+   +..+.|+||||+...
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~   97 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA   97 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence            457899999999999999999999887778899999988654333   457899999999754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.88  E-value=6.7e-10  Score=110.08  Aligned_cols=56  Identities=27%  Similarity=0.351  Sum_probs=30.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE----E-------------------eC----CcEEEEecC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV----R-------------------FG----KDLEFLDSP  270 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~----~-------------------~~----~~i~l~DTp  270 (383)
                      ++|++||.||||||||+|+|++.+ +.+++.||||++....    .                   ++    ..+.++|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            369999999999999999999877 7889999999985321    1                   01    258899999


Q ss_pred             cccc
Q 016762          271 GIIP  274 (383)
Q Consensus       271 G~i~  274 (383)
                      |+..
T Consensus        80 G~~~   83 (397)
T 1wxq_A           80 GLVP   83 (397)
T ss_dssp             ----
T ss_pred             Cccc
Confidence            9974

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.88  E-value=1.2e-09  Score=104.29  Aligned_cols=56  Identities=32%  Similarity=0.456  Sum_probs=46.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i  273 (383)
                      ..|+|||.||||||||+|+|++.+...+++.|++|++...  +.. +..+.++||||+.
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~   67 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH   67 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence            3699999999999999999999887778899999987432  222 3468899999986

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.87  E-value=1.1e-09  Score=106.91  Aligned_cols=56  Identities=41%  Similarity=0.564  Sum_probs=41.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC------------------CcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~------------------~~i~l~DTpG~i~  274 (383)
                      .+|+|||.||||||||+|+|++.. +.+++.||+|.+...  +.+.                  ..+.++||||+..
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~   78 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA   78 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence            579999999999999999999876 789999999998642  2332                  3589999999985

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.87  E-value=3.3e-09  Score=99.81  Aligned_cols=58  Identities=38%  Similarity=0.493  Sum_probs=48.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--CCcEEEEecCccccC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM  275 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--~~~i~l~DTpG~i~~  275 (383)
                      .++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+  +..+.++||||.-..
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~   62 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM   62 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCcc
Confidence            4689999999999999999999865 578999999998655444  457999999998643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.86  E-value=3e-09  Score=99.26  Aligned_cols=59  Identities=37%  Similarity=0.540  Sum_probs=48.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccCC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR  276 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~  276 (383)
                      .++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+   +..+.++||||+-...
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~   66 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG   66 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccC
Confidence            4689999999999999999999865 568999999998754433   4478999999997543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.85  E-value=9.9e-10  Score=110.76  Aligned_cols=58  Identities=36%  Similarity=0.528  Sum_probs=38.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      .++|+|||.||||||||+|+|+++....+++.||+|++......   +..+.++||||+..
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~   83 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI   83 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC---
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCC
Confidence            35799999999999999999999877779999999999877665   45799999999873

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.85  E-value=2.2e-09  Score=111.01  Aligned_cols=58  Identities=28%  Similarity=0.391  Sum_probs=42.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCce----eEEE-EE-----EeCCcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT----RVLK-WV-----RFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT----~~~~-~~-----~~~~~i~l~DTpG~i~~  275 (383)
                      ...+|+|||+||||||||||+|+|.... + +.+|+|    +.+. |.     ..+..+.|+||||+...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~-~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~  104 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKG-F-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV  104 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSC-S-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCc-c-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence            4567999999999999999999997642 1 444444    4442 21     12457999999999854

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.85  E-value=2.9e-09  Score=98.73  Aligned_cols=61  Identities=18%  Similarity=0.351  Sum_probs=47.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCC-ceeEEEE--EEe-CCcEEEEecCccccCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKW--VRF-GKDLEFLDSPGIIPMR  276 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-tT~~~~~--~~~-~~~i~l~DTpG~i~~~  276 (383)
                      ..++|+|+|.||||||||+|+|++.....++..|+ +|++...  ... +..+.++||||+....
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~   85 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK   85 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence            45789999999999999999999877666666666 7877543  222 4579999999998654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.84  E-value=2.9e-09  Score=99.90  Aligned_cols=58  Identities=28%  Similarity=0.324  Sum_probs=38.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCC-------CCCceeEEEEEEe--CC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRF--GK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-------~pgtT~~~~~~~~--~~---~i~l~DTpG~i  273 (383)
                      ..++|++||.||||||||+|+|++.+......       .++++.+.....+  +.   .+.++||||+-
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~   76 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG   76 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence            45789999999999999999999876544332       3444444444333  22   68999999994

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.83  E-value=4.3e-09  Score=103.95  Aligned_cols=61  Identities=30%  Similarity=0.351  Sum_probs=50.0

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC------------------CcEEEEecCcccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIP  274 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~------------------~~i~l~DTpG~i~  274 (383)
                      ....+++|||.||||||||||+|++...+.+++.||+|+++.  .+.+.                  ..+.++||||+..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            446789999999999999999999987668999999999853  33333                  2579999999985


Q ss_pred             C
Q 016762          275 M  275 (383)
Q Consensus       275 ~  275 (383)
                      .
T Consensus        98 ~   98 (392)
T 1ni3_A           98 G   98 (392)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.82  E-value=3.8e-09  Score=92.10  Aligned_cols=55  Identities=35%  Similarity=0.510  Sum_probs=47.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~  274 (383)
                      ++|+++|.+|||||||+|+|.+.. ..++..||+|.+...+... .+.++||||+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~   56 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGF   56 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCccc
Confidence            479999999999999999999765 6778889999988877766 899999999754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.82  E-value=2.2e-09  Score=105.98  Aligned_cols=60  Identities=32%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe------------------CCcEEEEecCcccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF------------------GKDLEFLDSPGIIP  274 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~------------------~~~i~l~DTpG~i~  274 (383)
                      ....+|+|||.||||||||+|+|++.+ +.+++.||+|.++..  +.+                  ...+.++||||+..
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            345789999999999999999999876 488999999987533  222                  22489999999986


Q ss_pred             C
Q 016762          275 M  275 (383)
Q Consensus       275 ~  275 (383)
                      .
T Consensus        99 ~   99 (396)
T 2ohf_A           99 G   99 (396)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.81  E-value=6.4e-09  Score=97.38  Aligned_cols=60  Identities=33%  Similarity=0.443  Sum_probs=49.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccCCC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI  277 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~~  277 (383)
                      .++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+   +..+.++||||+.....
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~   65 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA   65 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence            3579999999999999999999876 488999999998754332   45689999999975443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.79  E-value=3.8e-09  Score=94.11  Aligned_cols=59  Identities=24%  Similarity=0.443  Sum_probs=39.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC-ccccCCCCCceeEEEEEEeCCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~  274 (383)
                      ...+|+++|.+|||||||+|+|++.. ...+.+.+|+|+....+.++..+.++||||+..
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~   84 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY   84 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence            35679999999999999999999865 455688899998876666656899999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.79  E-value=8.7e-09  Score=88.54  Aligned_cols=57  Identities=32%  Similarity=0.563  Sum_probs=40.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-CCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~i~l~DTpG~i~~  275 (383)
                      .+|+++|.+|||||||+|+|++.. ..++..||+|.+..  .+.. +..+.++||||....
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~   63 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL   63 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence            579999999999999999999754 46778899888743  2333 446889999998753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.78  E-value=1.9e-09  Score=105.01  Aligned_cols=24  Identities=42%  Similarity=0.618  Sum_probs=22.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      ....|+|+|+||||||||+|+|++
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999986

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.76  E-value=5.6e-09  Score=88.40  Aligned_cols=57  Identities=47%  Similarity=0.589  Sum_probs=38.1

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      .+|+++|.+|||||||+|+|.+.....+++.+++|.+.....+   +..+.++||||...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   61 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS   61 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence            4799999999999999999998765567888999988654433   45789999999975

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.74  E-value=2.6e-09  Score=103.75  Aligned_cols=56  Identities=30%  Similarity=0.456  Sum_probs=46.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC--CcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~i~l~DTpG~i~  274 (383)
                      .+|+|||+||||||||||+|++.+ ..+++.||+|.+...  +.++  ..+.++||||++.
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~  218 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE  218 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence            369999999999999999999765 567899999998654  3443  5799999999975

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.74  E-value=3.5e-09  Score=99.91  Aligned_cols=35  Identities=26%  Similarity=0.383  Sum_probs=28.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc-----ccCCCCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG  250 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v~~~pg  250 (383)
                      ..++|++||.||||||||+|+|++....     .++..|+
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~   64 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL   64 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence            4568999999999999999999987654     4455675

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.73  E-value=2e-08  Score=87.57  Aligned_cols=58  Identities=31%  Similarity=0.540  Sum_probs=46.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCccccC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM  275 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~~  275 (383)
                      .++|+++|.+|||||||+|+|++.. ..++..||+|.+.....  . +..+.++||||....
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~   67 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL   67 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence            4689999999999999999999764 56788899998865433  3 456889999998654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.73  E-value=1.4e-08  Score=87.13  Aligned_cols=58  Identities=19%  Similarity=0.169  Sum_probs=41.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i~  274 (383)
                      .++|+++|.+|||||||+|+|.+.......+.+|+|.....+.++.   .+.++||||.-.
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   64 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK   64 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence            5789999999999999999999877656667788887666666643   478999999854

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.72  E-value=1e-08  Score=93.06  Aligned_cols=58  Identities=26%  Similarity=0.366  Sum_probs=42.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|++.. ..+++.+++|++......   +..+.++||||+..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~   88 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD   88 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence            45789999999999999999999875 447788999998765433   34689999999964

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.69  E-value=1.9e-08  Score=97.97  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=28.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-----ccCCCCC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG  250 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v~~~pg  250 (383)
                      .++|++||.||||||||+|+|+|.+..     .++..|+
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~   69 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL   69 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence            468999999999999999999987654     4455566

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.68  E-value=2.4e-08  Score=94.96  Aligned_cols=27  Identities=26%  Similarity=0.427  Sum_probs=24.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM  242 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~  242 (383)
                      ..++|++||.||||||||+|+|+|...
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            346899999999999999999998765

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.66  E-value=7.6e-09  Score=101.42  Aligned_cols=57  Identities=39%  Similarity=0.509  Sum_probs=45.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EE----------------------eCCcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VR----------------------FGKDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~----------------------~~~~i~l~DTpG~i  273 (383)
                      ++|++||.||||||||+|+|++.. +.+++.||+|.+...  ..                      .+..+.++||||++
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            368999999999999999999864 678999999987432  22                      13468999999998


Q ss_pred             cC
Q 016762          274 PM  275 (383)
Q Consensus       274 ~~  275 (383)
                      ..
T Consensus        81 ~~   82 (368)
T 2dby_A           81 KG   82 (368)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.66  E-value=3.3e-08  Score=84.23  Aligned_cols=58  Identities=24%  Similarity=0.425  Sum_probs=45.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+... ....+..|+|.....+...   ..+.++||||.-
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~   66 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE   66 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence            357899999999999999999997652 2346677877776665654   357899999984

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.63  E-value=2.6e-08  Score=87.15  Aligned_cols=106  Identities=16%  Similarity=0.037  Sum_probs=68.2

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~D  158 (383)
                      ....+.+||..-   +      ..........+..+|++++|+|+..+.+....  .+..+.     .+.|+++|+||+|
T Consensus        62 ~~~~~~i~Dt~G---~------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D  132 (195)
T 1x3s_A           62 NKAKLAIWDTAG---Q------ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID  132 (195)
T ss_dssp             EEEEEEEEEECS---S------GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred             eEEEEEEEeCCC---c------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCc
Confidence            345678888432   2      22233344678999999999999765433221  122222     2568899999999


Q ss_pred             CCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       159 L~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +..... ......+....+..++.+|+++|.|+.++.+.+.+.
T Consensus       133 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  175 (195)
T 1x3s_A          133 KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK  175 (195)
T ss_dssp             SSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            954321 122334445567888999999999999887665543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.63  E-value=3.2e-08  Score=84.21  Aligned_cols=58  Identities=26%  Similarity=0.146  Sum_probs=34.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeC--CcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~--~~i~l~DTpG~i~  274 (383)
                      .++|+++|.+|||||||+|+|++.....+.+.+|+|.......-+  ..+.++||||.-.
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   61 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG   61 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence            358999999999999999999987766778888998864432222  2467999999753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.59  E-value=4.5e-08  Score=100.88  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=34.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc--ccCCCCCceeEE
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVL  255 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~--~v~~~pgtT~~~  255 (383)
                      ..++|+|+|.+|||||||+|+|++.+..  .+++.|+||+..
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~  105 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV  105 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE
Confidence            4578999999999999999999988754  588899987753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.56  E-value=9.9e-08  Score=81.06  Aligned_cols=57  Identities=23%  Similarity=0.415  Sum_probs=42.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|+|.+.... ...+..|.+.....+.++.   .+.++||||.-
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   63 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE   63 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence            468999999999999999999976522 2344556655555555543   57899999964

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.55  E-value=9.8e-08  Score=101.03  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=33.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV  251 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgt  251 (383)
                      ..++|+|+|.||||||||+|+|+|...+.++..|+|
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T  103 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT  103 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence            467899999999999999999999988888889988

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.54  E-value=1.4e-07  Score=79.68  Aligned_cols=55  Identities=22%  Similarity=0.278  Sum_probs=37.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|+|.+....  .....++.+.  ..+.++.   .+.++||||.-
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~   62 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE   62 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence            468999999999999999999976422  2333333332  2333332   37899999964

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.54  E-value=5.4e-07  Score=80.73  Aligned_cols=116  Identities=16%  Similarity=0.099  Sum_probs=75.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhh---cCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKL---MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh-~~~~~~~l~~~idr---~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL  159 (383)
                      .+..+.+||...-...-.+.. .......+...+..   +|++++|+|+..+.......+..++.  +.|+++|+||+|+
T Consensus        77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl  156 (223)
T 4dhe_A           77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK  156 (223)
T ss_dssp             TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred             CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence            356788999653211111111 23334444455544   88899999999876655555555553  6899999999999


Q ss_pred             CCHHHHHHH----HHHHHH-------cCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          160 ISMADRNAW----ATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       160 ~~~~~~~~w----~~~l~~-------~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      .+.......    .+.+..       .+..++++|+++|.|+.+|.+.+.+..
T Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  209 (223)
T 4dhe_A          157 LTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWL  209 (223)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence            987654332    233333       235688999999999999987776554

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.54  E-value=8.6e-08  Score=84.24  Aligned_cols=58  Identities=26%  Similarity=0.433  Sum_probs=46.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++... ....+.+|+|.....+..+   ..+.++||||.-
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   83 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE   83 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence            357899999999999999999997652 2466778888877666653   257899999964

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.53  E-value=3.5e-08  Score=84.99  Aligned_cols=57  Identities=26%  Similarity=0.450  Sum_probs=43.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i  273 (383)
                      ...+|+++|.+|||||||+|+|++.. ......+++|.+...  +.. +..+.++||||.-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   66 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHE   66 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence            46789999999999999999999764 455566777766432  333 4568899999974

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.53  E-value=6e-08  Score=84.95  Aligned_cols=80  Identities=18%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             CCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc--ccCCCCCceeEEEEEEeCCcE
Q 016762          187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKWVRFGKDL  264 (383)
Q Consensus       187 g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~--~v~~~pgtT~~~~~~~~~~~i  264 (383)
                      ...+..+.+.+.++......     +.....++|+++|.+|||||||+|+|.+....  ..+..|++|.+.    .+..+
T Consensus        23 ~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~   93 (193)
T 2ged_A           23 KRKISQWREWIDEKLGGGSG-----GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGV   93 (193)
T ss_dssp             TTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTC
T ss_pred             HHHHHHHHHHHHHHHHhhcC-----CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeE
Confidence            34455555555544332211     11234678999999999999999999976522  123445555443    34578


Q ss_pred             EEEecCccccC
Q 016762          265 EFLDSPGIIPM  275 (383)
Q Consensus       265 ~l~DTpG~i~~  275 (383)
                      .++||||....
T Consensus        94 ~l~Dt~G~~~~  104 (193)
T 2ged_A           94 TLVDFPGHVKL  104 (193)
T ss_dssp             SEEEETTCCBS
T ss_pred             EEEECCCCchH
Confidence            89999998643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.53  E-value=1.3e-07  Score=80.30  Aligned_cols=58  Identities=24%  Similarity=0.328  Sum_probs=43.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++..... ..+..|++.....+.++.   .+.++||||.-
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   66 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE   66 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            35789999999999999999999754322 335566666655555543   57899999964

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.52  E-value=1.2e-07  Score=80.82  Aligned_cols=56  Identities=23%  Similarity=0.412  Sum_probs=39.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+.......+..|.+.  ..+.. +..+.++||||.-
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~   62 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT   62 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETTEEEEEEEECCCG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECCEEEEEEECCCCh
Confidence            45789999999999999999998765433333333332  22233 4568899999974

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.52  E-value=7.2e-08  Score=92.05  Aligned_cols=57  Identities=19%  Similarity=0.214  Sum_probs=46.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~i  273 (383)
                      ..+|+++|.+|||||||+|+|++.....+++.+|+|.+.....+    +..+.++||||.-
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~   63 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD   63 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence            46899999999999999999987755667788999998765433    2357899999974

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.50  E-value=1.7e-07  Score=80.80  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=42.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.........|.++.+...  +.++.   .+.++||||.-
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~   71 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE   71 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            457899999999999999999998764334445655555432  33443   57899999963

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.49  E-value=1.5e-07  Score=80.86  Aligned_cols=57  Identities=25%  Similarity=0.285  Sum_probs=41.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+.. ......|++|.+..  .+..+.   .+.++||||.-
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   69 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE   69 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence            45789999999999999999999765 34555677766653  334433   57899999964

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.49  E-value=4.1e-08  Score=97.97  Aligned_cols=60  Identities=23%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CC-cEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~-~i~l~DTpG~i~~  275 (383)
                      ..++|+++|.+|||||||+|+|++.....+++.+|+|.+.....+   +. .+.++||||+...
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~   96 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV   96 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence            356899999999999999999998876678899999998654333   23 7899999999743

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.48  E-value=2.2e-07  Score=79.66  Aligned_cols=58  Identities=21%  Similarity=0.309  Sum_probs=41.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+..... ..+..|.+.....+..+.   .+.++||||.-
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE   75 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence            35789999999999999999999765321 233345555555555543   57899999964

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.47  E-value=2.5e-07  Score=80.15  Aligned_cols=56  Identities=23%  Similarity=0.213  Sum_probs=40.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++..  .....+++|.+...  +.++.   .+.++||||.-
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   63 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE   63 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcH
Confidence            35789999999999999999999765  34555666655432  23332   26689999964

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.47  E-value=1.9e-07  Score=81.19  Aligned_cols=56  Identities=21%  Similarity=0.352  Sum_probs=39.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.......+..|.+..  .+.. +..+.++||||.-
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~   73 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHRGFKLNIWDVGGQK   73 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEETTEEEEEEEECCSH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEECCEEEEEEECCCCH
Confidence            457899999999999999999997663333344443322  2223 4468899999973

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.47  E-value=2.4e-07  Score=79.50  Aligned_cols=57  Identities=21%  Similarity=0.239  Sum_probs=38.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.. ......|.++.+  ...+.++.   .+.++||||.-
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   67 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE   67 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSC-CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence            35789999999999999999999754 233333444433  33444444   68899999953

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.47  E-value=2.8e-07  Score=80.74  Aligned_cols=59  Identities=20%  Similarity=0.352  Sum_probs=41.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeC---CcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~---~~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|++...... .+..|++.....+.++   ..+.++||||.-.
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER   86 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence            457999999999999999999997653322 2333554444444443   3578999999853

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.46  E-value=1.5e-07  Score=84.63  Aligned_cols=58  Identities=17%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhh-cCCccccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~-~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|++. +.......+.+|+|.......++.   .+.++||||.-
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   75 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE   75 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChH
Confidence            45789999999999999999954 443445678889998877666543   57899999964

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.46  E-value=3.2e-07  Score=97.34  Aligned_cols=63  Identities=19%  Similarity=0.225  Sum_probs=38.7

Q ss_pred             eCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCC
Q 016762          183 NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP  247 (383)
Q Consensus       183 Sa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~  247 (383)
                      ++..+.|++++...+.++.........  ...-..++|++||++|+|||||+|+|+|.....++.
T Consensus        19 ~~~~~~~~~~li~~inkl~d~l~~lg~--~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~   81 (772)
T 3zvr_A           19 SHMGNRGMEDLIPLVNRLQDAFSAIGQ--NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS   81 (772)
T ss_dssp             ------CGGGHHHHHHHHHHHHHTTTC--CGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSS
T ss_pred             cccccccHHHHHHHHHHHHHHHHhcCc--cccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCC
Confidence            345567788887777776543322111  111245689999999999999999999976544443

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.46  E-value=1.3e-07  Score=82.56  Aligned_cols=56  Identities=27%  Similarity=0.400  Sum_probs=41.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+.....+.+..|.+...  +.. +..+.++||||.-
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~--~~~~~~~l~i~Dt~G~~   71 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS--VQSQGFKLNVWDIGGQR   71 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE--EEETTEEEEEEECSSCG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEE--EEECCEEEEEEECCCCH
Confidence            4578999999999999999999987544455566655332  222 4468899999974

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.45  E-value=1.4e-07  Score=80.18  Aligned_cols=57  Identities=21%  Similarity=0.290  Sum_probs=37.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~  274 (383)
                      .++|+++|.+|||||||+|+|.+.. ......|.++.+..  .+..+.   .+.++||||.-.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   64 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER   64 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence            4689999999999999999999764 33444555555543  334433   478899999753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.45  E-value=2.9e-07  Score=79.30  Aligned_cols=58  Identities=21%  Similarity=0.275  Sum_probs=40.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++...... ....|++.....+.++.   .+.++||||.-
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   72 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   72 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence            357899999999999999999997653221 22334444444444432   58899999964

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.44  E-value=3.6e-07  Score=77.24  Aligned_cols=55  Identities=20%  Similarity=0.208  Sum_probs=38.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|+|.+...  ....++++.+..  .+.++.   .+.++||||.-
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~   63 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE   63 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence            46899999999999999999997652  334444444432  223333   57899999964

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.44  E-value=1.8e-07  Score=81.30  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=42.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+.......+..|.+...  +.. +..+.++||||.-
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~   76 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE--IVINNTRFLMWDIGGQE   76 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEE--EEETTEEEEEEEESSSG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEE--EEECCEEEEEEECCCCH
Confidence            4578999999999999999999987654556666655432  222 4578899999984

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.44  E-value=3.3e-07  Score=77.69  Aligned_cols=58  Identities=24%  Similarity=0.302  Sum_probs=39.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|.+.. ......|.++.+.  ..+..+.   .+.++||||.-.
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   66 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE   66 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence            35789999999999999999999754 2222233333332  3333333   578999999753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.43  E-value=1.7e-07  Score=81.09  Aligned_cols=57  Identities=21%  Similarity=0.349  Sum_probs=39.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|++.......+..|.+..  .+.. +..+.++||||...
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~   74 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTS   74 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETTEEEEEEEEC----
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEECCEEEEEEECCCCHh
Confidence            467899999999999999999997655455556664432  2233 45688999999853

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.43  E-value=3.8e-07  Score=79.63  Aligned_cols=58  Identities=21%  Similarity=0.249  Sum_probs=42.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.... ...+..|++.....+...   ..+.++||||.-
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   82 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE   82 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence            3578999999999999999999976532 223445666555554443   257899999964

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.43  E-value=2.4e-07  Score=78.94  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=39.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.. ......|.++.+.  ..+.++.   .+.++||||.-
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   66 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE   66 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence            45789999999999999999999764 2333344444443  3344432   46788999963

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.43  E-value=3.7e-07  Score=78.27  Aligned_cols=56  Identities=20%  Similarity=0.262  Sum_probs=41.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|+|++.. ......+.++.+..  .+.++.   .+.++||||.-
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~   74 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   74 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence            4789999999999999999999654 33444566665543  333443   57899999964

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.43  E-value=2.2e-07  Score=81.09  Aligned_cols=56  Identities=18%  Similarity=0.259  Sum_probs=39.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.......+..|.+..  .+.. +..+.++||||.-
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~   71 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINNTRFLMWDIGGQE   71 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEETTEEEEEEECCC--
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEECCEEEEEEECCCCH
Confidence            357899999999999999999997654444455554432  2222 4568899999985

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.42  E-value=2.6e-07  Score=81.59  Aligned_cols=58  Identities=28%  Similarity=0.319  Sum_probs=37.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++... ....+..|++.....+.++.   .+.++||||.-
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   88 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE   88 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence            357899999999999999999997652 23445556666555555543   47899999964

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.42  E-value=4.1e-07  Score=79.46  Aligned_cols=58  Identities=24%  Similarity=0.322  Sum_probs=40.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+..... ..+..+++.....+.++.   .+.++||||.-
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   80 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE   80 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence            35789999999999999999999754321 222333333344444443   57899999963

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.42  E-value=3.9e-07  Score=77.22  Aligned_cols=56  Identities=21%  Similarity=0.204  Sum_probs=37.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~  274 (383)
                      .++|+++|.+|||||||+|+|.+...  ......++.+..  .+.++.   .+.++||||...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~   63 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ   63 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence            46899999999999999999997542  222333333322  222322   478999999753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.42  E-value=2.2e-07  Score=81.06  Aligned_cols=56  Identities=27%  Similarity=0.425  Sum_probs=39.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+.......+..|.+..  .+.. +..+.++||||.-
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~   77 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYKNISFEVWDLGGQT   77 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEETTEEEEEEEECCSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEECCEEEEEEECCCCH
Confidence            357899999999999999999987654333333343322  2223 4578899999974

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.42  E-value=2.1e-07  Score=79.15  Aligned_cols=55  Identities=25%  Similarity=0.321  Sum_probs=36.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc--ccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~--~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|+|++....  .......+++..  ...+   ..+.++||||.-
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~Dt~G~~   62 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV--ISCDKSICTLQITDTTGSH   62 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE--EEETTEEEEEEEEECCSCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE--EEECCEEEEEEEEECCCch
Confidence            468999999999999999999975421  112222233222  2222   247899999974

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.41  E-value=3.3e-07  Score=78.70  Aligned_cols=57  Identities=19%  Similarity=0.176  Sum_probs=41.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|++..  ...+.+++|.+..  .+..+.   .+.++||||.-.
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   69 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE   69 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence            35789999999999999999999764  3455566665532  233332   577899999753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.41  E-value=4.7e-07  Score=79.93  Aligned_cols=58  Identities=21%  Similarity=0.308  Sum_probs=42.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.... ...+..|+|.....+..+.   .+.++||||.-
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   68 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE   68 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence            3578999999999999999999976532 2234446565555555432   57899999974

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.41  E-value=3e-07  Score=80.42  Aligned_cols=57  Identities=19%  Similarity=0.249  Sum_probs=42.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.. ......+++|.+..  .+..+.   .+.++||||.-
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   76 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE   76 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence            35789999999999999999999754 34455566665543  444443   57899999964

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.41  E-value=4.5e-07  Score=78.33  Aligned_cols=57  Identities=23%  Similarity=0.351  Sum_probs=39.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|++..  ..+..+.++.+.  ..+..+.   .+.++||||.-.
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   66 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE   66 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchh
Confidence            35689999999999999999999654  234444444332  2333332   467999999753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.40  E-value=4.6e-07  Score=79.02  Aligned_cols=57  Identities=28%  Similarity=0.335  Sum_probs=41.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|+|++.... ...+..|++.....+.++.   .+.++||||.-
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   75 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE   75 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCch
Confidence            478999999999999999999976522 2334445555555555543   47899999975

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.40  E-value=4.7e-07  Score=78.48  Aligned_cols=57  Identities=18%  Similarity=0.345  Sum_probs=41.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+.. ......+.++.+.  ..+..+.   .+.++||||.-
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   70 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE   70 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            35789999999999999999999765 3334445555443  3344443   57899999963

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.40  E-value=4.1e-07  Score=79.52  Aligned_cols=56  Identities=20%  Similarity=0.184  Sum_probs=38.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+.......  ...|.+.  ..+.. +..+.++||||.-
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~   78 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQG   78 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCST
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCH
Confidence            4578999999999999999999976522222  1223332  22233 4578999999964

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.40  E-value=4.9e-07  Score=78.92  Aligned_cols=26  Identities=35%  Similarity=0.516  Sum_probs=23.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      ..++|+++|.+|||||||+|+|++..
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCc
Confidence            46789999999999999999999865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.39  E-value=3.4e-07  Score=80.90  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=40.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.. ......+.++.+..  .+.++.   .+.++||||.-
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   68 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE   68 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence            45789999999999999999999765 23334455555543  333332   57899999964

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.39  E-value=6.4e-07  Score=75.37  Aligned_cols=54  Identities=26%  Similarity=0.273  Sum_probs=37.1

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||+|+|.+...  ....+.++.+.  ..+..+.   .+.++||||.-
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   62 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQE   62 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCch
Confidence            5799999999999999999997642  23333444332  2233332   36789999964

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.39  E-value=3.8e-07  Score=80.18  Aligned_cols=56  Identities=21%  Similarity=0.246  Sum_probs=41.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i~  274 (383)
                      ..+|+++|.+|||||||+|+|.+.......+..+.+..  .+.. +..+.++||||.-.
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~   79 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE--ELAIGNIKFTTFDLGGHIQ   79 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEE--EEEETTEEEEEEECCCSGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeE--EEEECCEEEEEEECCCCHH
Confidence            45799999999999999999998765445555555532  3333 34688999999853

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.38  E-value=3.9e-07  Score=81.20  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=41.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeC----CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~----~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++..  .....+.++.+...+.++    ..+.++||||..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   65 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE   65 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence            35689999999999999999999765  344455566665555554    248999999974

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.38  E-value=5.3e-07  Score=79.96  Aligned_cols=58  Identities=21%  Similarity=0.290  Sum_probs=41.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|.+.. ......|++|.+.  ..+.++.   .+.++||||.-.
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   81 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER   81 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            45789999999999999999999764 3344455555554  3344443   578999999753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.38  E-value=4.4e-06  Score=72.59  Aligned_cols=114  Identities=22%  Similarity=0.316  Sum_probs=72.3

Q ss_pred             CCcEEEEcCCC-CCcCCCchHHHHHHHHHHHHhh---hcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSL-RPVQWYPGHIAKTEKELKDQLK---LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L-~~~qw~Pgh~~~~~~~l~~~id---r~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~  160 (383)
                      +..+.+||..- ....|-..............+.   .+|++++|+|+..+.......+..++.  +.|+++|+||+|+.
T Consensus        67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  146 (195)
T 3pqc_A           67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV  146 (195)
T ss_dssp             TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred             CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence            44677888643 1122222222333333344444   459999999998766555555555543  78999999999998


Q ss_pred             CHHHHHHHHH----HHHHcC-CeEEEeeCcCCCchhhhhHHHHHh
Q 016762          161 SMADRNAWAT----YFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       161 ~~~~~~~w~~----~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +..+.....+    .+...+ ..++++|+++|.|+.++.+.+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  191 (195)
T 3pqc_A          147 KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTL  191 (195)
T ss_dssp             CGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHH
Confidence            7654433322    232223 578999999999999887666543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.37  E-value=4.7e-07  Score=79.54  Aligned_cols=57  Identities=28%  Similarity=0.368  Sum_probs=37.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCC--CceeEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++... .....+  |++.....+.++.   .+.++||||.-
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   86 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTDDTF-CEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE   86 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCC-CcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence            357899999999999999999997653 222233  3344444445543   57899999964

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.37  E-value=3e-07  Score=95.45  Aligned_cols=135  Identities=17%  Similarity=0.126  Sum_probs=90.5

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH-hcCCCeEEEEEccCCCCHH--
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW-LGNRKRILVLNREDMISMA--  163 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~-l~~k~~ilVlNK~DL~~~~--  163 (383)
                      ..+.+||.        ||| ..+..++...+..+|.+++|+|+..+....... +... ..+.|+++|+||+|+....  
T Consensus        71 ~~l~liDT--------PGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~  141 (599)
T 3cb4_D           71 YQLNFIDT--------PGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPE  141 (599)
T ss_dssp             EEEEEEEC--------CCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHH
T ss_pred             EEEEEEEC--------CCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHH
Confidence            45567773        666 456667778899999999999998776543322 2222 2478999999999997532  


Q ss_pred             -HHHHHHHHHHHcCC---eEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeec---CCCChhHHHHh
Q 016762          164 -DRNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY---PNVGKSSLINR  236 (383)
Q Consensus       164 -~~~~w~~~l~~~g~---~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~---pNvGKSTLiN~  236 (383)
                       ....|.+.+   +.   .++++|+++|.|+.+|.+.+.+.....      .+....+++..+...   +++|+.++++.
T Consensus       142 ~v~~ei~~~l---g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p------~~~~~~p~~alI~d~~~d~~~G~v~~~rV  212 (599)
T 3cb4_D          142 RVAEEIEDIV---GIDATDAVRCSAKTGVGVQDVLERLVRDIPPP------EGDPEGPLQALIIDSWFDNYLGVVSLIRI  212 (599)
T ss_dssp             HHHHHHHHHT---CCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC------CCCTTSCCEEEEEEEEEETTTEEEEEEEE
T ss_pred             HHHHHHHHHh---CCCcceEEEeecccCCCchhHHHHHhhcCCCc------cccccCCceeeeeeccccccccEEEEEEE
Confidence             233343332   43   489999999999998876655443221      111234555555555   89999999998


Q ss_pred             hhcC
Q 016762          237 LLKR  240 (383)
Q Consensus       237 L~~~  240 (383)
                      +.|.
T Consensus       213 ~sG~  216 (599)
T 3cb4_D          213 KNGT  216 (599)
T ss_dssp             EESC
T ss_pred             EeCE
Confidence            8764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.37  E-value=2.3e-07  Score=92.35  Aligned_cols=56  Identities=38%  Similarity=0.587  Sum_probs=45.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC--CcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~--~~i~l~DTpG~i~  274 (383)
                      ..|+|||+||||||||||+|++.. ..+++.|++|.+...  +..+  ..+.+.||||++.
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~  217 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE  217 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence            358999999999999999999865 468899999988653  3333  5689999999975

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.36  E-value=7.4e-07  Score=76.92  Aligned_cols=56  Identities=20%  Similarity=0.180  Sum_probs=40.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+..  .....+++|.+...  +.++.   .+.++||||.-
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~   77 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE   77 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence            35789999999999999999999765  23444555544322  23333   57899999964

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.36  E-value=7.7e-07  Score=78.38  Aligned_cols=56  Identities=20%  Similarity=0.169  Sum_probs=40.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+..  .....+++|.+..  .+.++.   .+.++||||.-
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE   73 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChh
Confidence            45789999999999999999999765  3445555555532  233343   57899999964

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.35  E-value=3.5e-07  Score=91.65  Aligned_cols=58  Identities=22%  Similarity=0.283  Sum_probs=43.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccc------------------------------cCCCCCceeEEEEEEe---CC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK  262 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~------------------------------v~~~pgtT~~~~~~~~---~~  262 (383)
                      ..++|+++|.+|+|||||+|+|++.....                              ....+|+|.+.....+   +.
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~   95 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK   95 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence            45789999999999999999996532211                              1223789998765544   45


Q ss_pred             cEEEEecCccc
Q 016762          263 DLEFLDSPGII  273 (383)
Q Consensus       263 ~i~l~DTpG~i  273 (383)
                      .+.++||||..
T Consensus        96 ~~~iiDTPGh~  106 (439)
T 3j2k_7           96 HFTILDAPGHK  106 (439)
T ss_pred             EEEEEECCChH
Confidence            78999999974

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.35  E-value=3.4e-07  Score=81.15  Aligned_cols=55  Identities=24%  Similarity=0.309  Sum_probs=36.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..+|+++|.+|||||||+|+|.+.......+..+.+..  .+.+ +..+.++||||.-
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~   80 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHI   80 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC--
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcH
Confidence            46899999999999999999997654444455555533  2333 3478899999964

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.35  E-value=4.8e-07  Score=79.28  Aligned_cols=56  Identities=16%  Similarity=0.213  Sum_probs=38.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcccc--CCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v--~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ...+|+++|.+|||||||+|+|++.....+  .+..|.+..  .+.. +..+.++||||.-
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~   74 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAK   74 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCH
Confidence            356899999999999999999998764443  444443332  2222 4468899999984

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.34  E-value=7.5e-07  Score=77.64  Aligned_cols=55  Identities=24%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|+|++..  ......++|.+..  .+..+.   .+.++||||.-
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~   80 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE   80 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCC--CccccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence            4789999999999999999999764  2334445554432  233332   37899999964

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.34  E-value=4.1e-07  Score=81.33  Aligned_cols=60  Identities=20%  Similarity=0.202  Sum_probs=41.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeC----CcEEEEecCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM  275 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~----~~i~l~DTpG~i~~  275 (383)
                      ..++|+++|.+|||||||+|+|++.... ......+++.........    ..+.++||||.-..
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   74 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK   74 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh
Confidence            4578999999999999999999965422 233455555544443332    24789999998643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.33  E-value=7.5e-07  Score=79.15  Aligned_cols=56  Identities=21%  Similarity=0.202  Sum_probs=39.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCc--EEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKD--LEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~--i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++..  ..+...++|.+....  .. +..  +.++||||.-
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   89 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE   89 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEECCEEEEEEEEECCCch
Confidence            45789999999999999999999653  345555666554332  22 333  4599999984

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.33  E-value=6.3e-07  Score=78.48  Aligned_cols=59  Identities=25%  Similarity=0.331  Sum_probs=40.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcccc-CCCCCceeEEEEEEeCC---cEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|++...... ....|++.....+.++.   .+.++||||.-.
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   82 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES   82 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence            457899999999999999999997653221 22234444444555543   578999999753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.32  E-value=2.6e-06  Score=81.17  Aligned_cols=114  Identities=15%  Similarity=0.102  Sum_probs=79.6

Q ss_pred             CCcEEEEcCCCCC--cCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH-HHHhc--CCCeEEEEEccCCC-
Q 016762           87 DADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMI-  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~--~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l-~~~l~--~k~~ilVlNK~DL~-  160 (383)
                      +..+++||.....  ..|.. ..+.+.+.....+..+|++++|+|+..+.+..+..+ ...+.  +.|+++|+||+|+. 
T Consensus        58 ~~~i~lvDTPG~~~~~~~~~-l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~  136 (308)
T 3iev_A           58 EAQIIFLDTPGIYEPKKSDV-LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIG  136 (308)
T ss_dssp             TEEEEEEECCCCCCCCTTCH-HHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSS
T ss_pred             CCeEEEEECcCCCccccchh-HHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCC
Confidence            6778899964321  11111 123344555677899999999999988766655554 44443  68999999999998 


Q ss_pred             CHHHHHHHHHHHHHc-C--CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          161 SMADRNAWATYFAKQ-G--TKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       161 ~~~~~~~w~~~l~~~-g--~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      +......+.+.+.+. +  ..++++|+++|.|+.+|.+.+.+..
T Consensus       137 ~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          137 PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             SGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence            666655565555543 3  5789999999999999877766554

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.32  E-value=5e-07  Score=77.57  Aligned_cols=57  Identities=18%  Similarity=0.242  Sum_probs=38.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeC----CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~----~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++... .....|.++.+  ...+.++    ..+.++||||.-
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~   67 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT   67 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence            457899999999999999999997542 11112222223  2333443    358899999964

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.32  E-value=8.2e-07  Score=78.61  Aligned_cols=57  Identities=21%  Similarity=0.244  Sum_probs=41.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.. ......|.++.+.  ..+.++.   .+.++||||.-
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   68 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE   68 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence            35789999999999999999999765 3334445544443  3444443   58899999964

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.32  E-value=5.1e-07  Score=77.58  Aligned_cols=56  Identities=21%  Similarity=0.341  Sum_probs=36.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeC----CcEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~----~~i~l~DTpG~  272 (383)
                      ..++|+++|.+|||||||+|+|.+... .....|.++.+  ...+.++    ..+.++||||.
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   68 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKY-SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ   68 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCC-CTTC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcC-CcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence            457899999999999999999997642 22333333333  3333433    25789999995

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.31  E-value=1.9e-06  Score=85.20  Aligned_cols=104  Identities=17%  Similarity=0.171  Sum_probs=73.7

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc-HH---HHHHhcCCCeEEEEEccCCCCHH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL---MDQWLGNRKRILVLNREDMISMA  163 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~-~~---l~~~l~~k~~ilVlNK~DL~~~~  163 (383)
                      ..+.+||.        ||| +.+.+.+...+..+|++++|+|++.+....+ .+   +...+..+|+++|+||+|+.+.+
T Consensus        75 ~~~~iiDt--------PGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  145 (403)
T 3sjy_A           75 RRISFIDA--------PGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE  145 (403)
T ss_dssp             EEEEEEEC--------CCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred             ceEEEEEC--------CCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH
Confidence            45778884        555 5667777788899999999999998653222 11   22223457899999999999877


Q ss_pred             HHHHHHHHHHH----c---CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          164 DRNAWATYFAK----Q---GTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       164 ~~~~w~~~l~~----~---g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ....+.+.+.+    .   +..++++|+++|.|+.+|.+.+.+.
T Consensus       146 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~  189 (403)
T 3sjy_A          146 EALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  189 (403)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence            55444433322    1   3578999999999999988777653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.31  E-value=7.6e-07  Score=77.82  Aligned_cols=56  Identities=16%  Similarity=0.282  Sum_probs=38.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+.... ...+..|.+.  ..+.. +..+.++||||.-
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~   78 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGNVTIKLWDIGGQP   78 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETTEEEEEEEECCSH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEeCCEEEEEEECCCCH
Confidence            4578999999999999999999976432 1223333332  22222 4468899999974

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.31  E-value=7.8e-07  Score=78.63  Aligned_cols=56  Identities=23%  Similarity=0.304  Sum_probs=37.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe---CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~---~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++....  .....++....  ...+   ...+.++||||.-
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~   83 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD   83 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc
Confidence            4578999999999999999999976532  33333333322  2222   2246899999964

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.31  E-value=6.9e-07  Score=79.09  Aligned_cols=57  Identities=18%  Similarity=0.299  Sum_probs=35.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.. ......+.++.+  ...+.++.   .+.++||||.-
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   85 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE   85 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence            45789999999999999999999754 233334444433  33444443   68899999974

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.30  E-value=1.3e-06  Score=75.52  Aligned_cols=56  Identities=21%  Similarity=0.211  Sum_probs=37.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC-c--EEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK-D--LEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~-~--i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++..  .......++...  .....+. .  +.++||||.-
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   77 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE   77 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCch
Confidence            45789999999999999999999753  233333333332  2233333 2  5569999964

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.30  E-value=7.2e-07  Score=75.52  Aligned_cols=54  Identities=19%  Similarity=0.292  Sum_probs=36.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||+|+|.+....  ...|........+.. +..+.++||||.-
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~   55 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD   55 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSS--CCCCCSSCCEEEEECSSCEEEEEECCCCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcC--cccCcCceeEEEEEECCEEEEEEEcCCCh
Confidence            36999999999999999999875532  233321112222233 4578999999984

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.30  E-value=1.3e-06  Score=76.78  Aligned_cols=57  Identities=26%  Similarity=0.347  Sum_probs=38.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeC---CcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~---~~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|++....  .....++..  ...+.++   ..+.++||||...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   88 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED   88 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence            3578999999999999999999976532  222222222  1223333   2478999999865

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.30  E-value=1.4e-06  Score=76.18  Aligned_cols=57  Identities=28%  Similarity=0.312  Sum_probs=36.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++..... ..+..+.+.. ..+..+.   .+.++||||.-
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~   67 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSH   67 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGG
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChH
Confidence            45789999999999999999999754211 1111122211 1222222   57899999975

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.30  E-value=9.6e-07  Score=76.61  Aligned_cols=57  Identities=18%  Similarity=0.206  Sum_probs=37.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE---EEEEeC------------CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFG------------KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~---~~~~~~------------~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+... .....+..+.+.   ..+..+            ..+.++||||.-
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   81 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE   81 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence            357899999999999999999997542 222222222222   233332            258899999973

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.30  E-value=3.4e-07  Score=80.82  Aligned_cols=57  Identities=18%  Similarity=0.077  Sum_probs=36.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|++||.||||||||+|++.+.....++..+.++.+.  ..+.++.   .+.++||+|.-
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~   67 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK   67 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence            468999999999999999999975433344444444443  2334433   34689999964

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.29  E-value=9.3e-07  Score=76.09  Aligned_cols=58  Identities=22%  Similarity=0.214  Sum_probs=39.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|++.......+..+.+. ...+.++.   .+.++||||...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~   66 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD   66 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch
Confidence            35789999999999999999999765333333333322 22333432   467899999753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.29  E-value=5.2e-07  Score=76.82  Aligned_cols=56  Identities=20%  Similarity=0.033  Sum_probs=32.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~  274 (383)
                      ++|+++|.+|||||||+|+|++..... ...+.+|.+..  .+.++.   .+.++||||.-.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   63 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD   63 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence            579999999999999999998654322 22233333332  233332   467899999853

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.28  E-value=2.7e-07  Score=96.28  Aligned_cols=58  Identities=26%  Similarity=0.349  Sum_probs=43.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCC------------------------------CCCceeEEEEEEe---CC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------------------------------RPGVTRVLKWVRF---GK  262 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~------------------------------~pgtT~~~~~~~~---~~  262 (383)
                      ..++|++||.+|||||||+|+|++.......+                              .+|+|.+.....+   +.
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~  245 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  245 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence            46799999999999999999998653222211                              3688988644333   45


Q ss_pred             cEEEEecCccc
Q 016762          263 DLEFLDSPGII  273 (383)
Q Consensus       263 ~i~l~DTpG~i  273 (383)
                      .+.++||||..
T Consensus       246 ~~~iiDTPG~e  256 (611)
T 3izq_1          246 NFTIVDAPGHR  256 (611)
T ss_dssp             EEEEEECCSSS
T ss_pred             eEEEEECCCCc
Confidence            78999999984

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.28  E-value=1.3e-06  Score=77.85  Aligned_cols=56  Identities=21%  Similarity=0.348  Sum_probs=40.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~  272 (383)
                      ..++|+++|.+|||||||+|+|++.. ......+.++.+.  ..+.++.   .+.++||||.
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~   85 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ   85 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence            35789999999999999999999754 3333444444443  3344443   5789999996

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.27  E-value=8.6e-07  Score=78.05  Aligned_cols=57  Identities=23%  Similarity=0.163  Sum_probs=36.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|.+..  .....++||.+...  +..+.   .+.++||||.-.
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   80 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE   80 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence            46789999999999999999999764  34555566655432  23333   466999999853

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.27  E-value=1.9e-07  Score=97.12  Aligned_cols=58  Identities=26%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcccc------------------------------CCCCCceeEEEEEEe---CC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK  262 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v------------------------------~~~pgtT~~~~~~~~---~~  262 (383)
                      ..++|+++|.+|+|||||+|+|++......                              ...+|+|.+.....+   +.
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~  255 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK  255 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence            457899999999999999999974321111                              125789998765444   35


Q ss_pred             cEEEEecCccc
Q 016762          263 DLEFLDSPGII  273 (383)
Q Consensus       263 ~i~l~DTpG~i  273 (383)
                      .+.|+||||..
T Consensus       256 ~i~iiDTPGh~  266 (592)
T 3mca_A          256 IYEIGDAPGHR  266 (592)
T ss_dssp             ---CCEEESSS
T ss_pred             EEEEEECCChH
Confidence            78999999964

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.26  E-value=3.7e-06  Score=73.36  Aligned_cols=111  Identities=13%  Similarity=0.097  Sum_probs=70.8

Q ss_pred             cEEEEcCCCCCcCCCchH-HHHHHHHHHHHhhhc---CeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCH
Q 016762           89 DLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKLM---DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM  162 (383)
Q Consensus        89 ~~vi~~~~L~~~qw~Pgh-~~~~~~~l~~~idr~---DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~  162 (383)
                      .+.+||..--...-.+.. ...........+..+   |++++|+|+..+.+..+.++..++.  +.|+++|+||+|+.+.
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~  149 (195)
T 1svi_A           70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK  149 (195)
T ss_dssp             TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred             cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence            678888543110000111 233344444555555   9999999998876665555555543  6899999999999987


Q ss_pred             HHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          163 ADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       163 ~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+.....+.+.+     .+..++++|+++|.|+.++.+.+.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  191 (195)
T 1svi_A          150 GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK  191 (195)
T ss_dssp             GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHH
Confidence            654332222222     2467889999999999988766544

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.25  E-value=1.1e-06  Score=76.78  Aligned_cols=57  Identities=19%  Similarity=0.188  Sum_probs=38.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|++..  ..+....|+.+..  .+.++.   .+.++||||.-.
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   81 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKR--FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT   81 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCc
Confidence            45789999999999999999999765  2344444554432  223332   467899999753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.25  E-value=1.1e-06  Score=79.07  Aligned_cols=57  Identities=18%  Similarity=0.289  Sum_probs=37.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCce--eEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT--~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++... .....|.++  .....+.++.   .+.++||||.-
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   73 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEF-NMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE   73 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCC-CC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence            357899999999999999999997653 222233333  3333444443   67899999964

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.24  E-value=3.5e-07  Score=80.15  Aligned_cols=57  Identities=23%  Similarity=0.278  Sum_probs=41.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeC---CcEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~  272 (383)
                      ..++|+++|.+|||||||+|+|++.... ...+..|++.....+...   ..+.++||||.
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~   82 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ   82 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence            4579999999999999999999975421 122334556665555543   24889999995

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.24  E-value=5.2e-07  Score=79.06  Aligned_cols=108  Identities=14%  Similarity=0.055  Sum_probs=70.6

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc------------CCC
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG------------NRK  149 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~------------~k~  149 (383)
                      ...+..+.+||..-.         .+........+..+|++++|+|+.++.+..+  ..+..++.            +.|
T Consensus        59 ~~~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p  129 (199)
T 4bas_A           59 EKGRVAFTVFDMGGA---------KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP  129 (199)
T ss_dssp             EETTEEEEEEEECCS---------GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC
T ss_pred             EeCCEEEEEEECCCC---------HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC
Confidence            345667888885332         2233333456889999999999987654322  22333322            679


Q ss_pred             eEEEEEccCCCCHHHHHHHHHHH------HHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          150 RILVLNREDMISMADRNAWATYF------AKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       150 ~ilVlNK~DL~~~~~~~~w~~~l------~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +++|+||+|+........+.+.+      ...+..++.+|+++|.|+.++.+.+.+.
T Consensus       130 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  186 (199)
T 4bas_A          130 FLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQET  186 (199)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             EEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHH
Confidence            99999999998763333332222      2345678899999999999887665543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.24  E-value=1e-06  Score=76.11  Aligned_cols=56  Identities=21%  Similarity=0.203  Sum_probs=37.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC-C--cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-K--DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~-~--~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++...  ......++.+..  .+.++ .  .+.++||||.-
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   64 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE   64 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence            357899999999999999999996542  233333433322  22232 2  35699999984

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.24  E-value=5.3e-07  Score=79.72  Aligned_cols=57  Identities=21%  Similarity=0.117  Sum_probs=39.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|++||.+|||||||+|+|++.. ......|++|.+..  .+.++.   .+.++||+|.-
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~   83 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG   83 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCCEE-CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhcc-CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence            35789999999999999999998643 22344566665543  233333   35678999984

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.24  E-value=3.1e-07  Score=79.47  Aligned_cols=57  Identities=16%  Similarity=0.218  Sum_probs=25.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.. ......|+++.+..  .+.++.   .+.++||||.-
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   68 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE   68 (183)
T ss_dssp             EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence            35789999999999999999999653 33344455665543  334433   57899999963

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.24  E-value=1.3e-06  Score=77.28  Aligned_cols=57  Identities=23%  Similarity=0.260  Sum_probs=39.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+.++.   .+.++||||.-
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   84 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQE   84 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence            357899999999999999999997653 222334333332 2234433   57899999964

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.23  E-value=4.8e-07  Score=79.72  Aligned_cols=58  Identities=22%  Similarity=0.214  Sum_probs=18.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCcee-EE--EEEEeCC-----cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VL--KWVRFGK-----DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~-~~--~~~~~~~-----~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+......+....||. +.  ..+.++.     .+.++||||.-
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   84 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD   84 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence            34789999999999999999999763223334444443 32  3344443     47899999973

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.23  E-value=1.5e-06  Score=76.21  Aligned_cols=56  Identities=20%  Similarity=0.233  Sum_probs=37.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC-C--cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-K--DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~-~--~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++...  ......|+.+..  .+..+ .  .+.++||||.-
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   82 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE   82 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence            457899999999999999999997652  233333333322  22232 2  35899999953

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.22  E-value=1.6e-06  Score=77.01  Aligned_cols=56  Identities=20%  Similarity=0.203  Sum_probs=35.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i  273 (383)
                      .++|+++|.+|||||||+|+|.+.... ....|.++.+. ..+.++.   .+.++||||.-
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   84 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQE   84 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCT
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcH
Confidence            468999999999999999999976532 22222222222 1233433   57899999974

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.22  E-value=1.9e-06  Score=77.09  Aligned_cols=56  Identities=20%  Similarity=0.198  Sum_probs=32.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      +.++|+++|.+|||||||+|+|++...  ......++.+..  .+.++.   .+.++||||.-
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~   93 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD   93 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence            357899999999999999999997542  223333333322  233333   57899999964

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.22  E-value=9.4e-07  Score=79.70  Aligned_cols=56  Identities=18%  Similarity=0.079  Sum_probs=37.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~  272 (383)
                      .++|++||.+|||||||+|++.+.....+...+.++.+.  ..+.++.   .+.++||+|.
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~   97 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN   97 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCC
Confidence            478999999999999999999975543344444444332  3334433   3568999985

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.21  E-value=2.1e-06  Score=72.58  Aligned_cols=105  Identities=10%  Similarity=0.056  Sum_probs=68.3

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D  158 (383)
                      .+..+.+||..-.         ..........+..+|++++|+|+.++.+...  ..+..++.     +.|+++|+||+|
T Consensus        42 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D  112 (164)
T 1r8s_A           42 KNISFTVWDVGGQ---------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD  112 (164)
T ss_dssp             SSCEEEEEECCCC---------GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred             CCEEEEEEEcCCC---------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcC
Confidence            4567888985332         2233444567899999999999987643222  12333332     678999999999


Q ss_pred             CCCHHHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+......+.+.+..     .+..++.+|+++|.|+.++.+.+.+
T Consensus       113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (164)
T 1r8s_A          113 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN  158 (164)
T ss_dssp             STTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHH
Confidence            9765333333333221     2345788999999999888666543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.20  E-value=1.7e-06  Score=76.73  Aligned_cols=57  Identities=18%  Similarity=0.253  Sum_probs=36.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+... .....+.++.+.  ..+.++.   .+.++||||.-
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~   89 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE   89 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence            357899999999999999999997542 222223222333  3344443   68899999964

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.20  E-value=5.9e-07  Score=91.09  Aligned_cols=58  Identities=26%  Similarity=0.353  Sum_probs=41.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc------------------------------cccCCCCCceeEEEEEEe---CC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM------------------------------CPAAPRPGVTRVLKWVRF---GK  262 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~------------------------------~~v~~~pgtT~~~~~~~~---~~  262 (383)
                      ..++|+++|.+|+|||||+|+|++...                              ......+|+|.+.....+   +.
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            357899999999999999999975411                              122344688888655444   45


Q ss_pred             cEEEEecCccc
Q 016762          263 DLEFLDSPGII  273 (383)
Q Consensus       263 ~i~l~DTpG~i  273 (383)
                      .+.++||||.-
T Consensus       112 ~~~iiDTPG~~  122 (483)
T 3p26_A          112 NFTIVDAPGHR  122 (483)
T ss_dssp             EEEEECCCCCG
T ss_pred             eEEEEECCCcH
Confidence            78999999984

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.19  E-value=3e-06  Score=73.72  Aligned_cols=105  Identities=13%  Similarity=0.100  Sum_probs=69.3

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH----HHHHHh-------cCCCeEEEE
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL-------GNRKRILVL  154 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~----~l~~~l-------~~k~~ilVl  154 (383)
                      ....+.+||..-..         .+.......+..+|++++|+|+..+....+.    .+..++       .+.|+++|+
T Consensus        72 ~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~  142 (198)
T 3t1o_A           72 FKTRFHLYTVPGQV---------FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV  142 (198)
T ss_dssp             CEEEEEEEECCSCC---------SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEE
T ss_pred             CceEEEEEeCCChH---------HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEE
Confidence            45568889854332         2223334578999999999999743222221    122332       367999999


Q ss_pred             EccCCCCHHHHHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762          155 NREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       155 NK~DL~~~~~~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ||+|+.+........+++...+. .++.+|+++|.|+.++.+.+.+
T Consensus       143 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  188 (198)
T 3t1o_A          143 NKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSR  188 (198)
T ss_dssp             ECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHH
T ss_pred             EchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHH
Confidence            99999754333344444555676 8899999999999988665544

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.19  E-value=1.3e-06  Score=76.85  Aligned_cols=54  Identities=20%  Similarity=0.294  Sum_probs=35.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEe-CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~-~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+......  .|  |.+.  ..+.. +..+.++||||.-
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~   84 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNICFTVWDVGGQD   84 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCcccc--CC--cCceeEEEEEECCEEEEEEECCCCH
Confidence            457899999999999999999986553222  22  3222  22222 3468899999984

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.18  E-value=8.4e-07  Score=79.20  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=23.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      ..++|+++|.+|||||||+|+|++..
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcCC
Confidence            45789999999999999999999754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.18  E-value=8.2e-07  Score=77.55  Aligned_cols=105  Identities=12%  Similarity=0.054  Sum_probs=68.1

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-------cCCCeEEEEEcc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNRE  157 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-------~~k~~ilVlNK~  157 (383)
                      +..+.+||....         ..........+..+|++++|+|+.++.+...  ..+..++       .+.|+++|+||+
T Consensus        66 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~  136 (190)
T 2h57_A           66 SLSFTVFDMSGQ---------GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM  136 (190)
T ss_dssp             SCEEEEEEECCS---------TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECT
T ss_pred             CEEEEEEECCCC---------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCc
Confidence            467888985432         1222333456899999999999987533222  2233332       357999999999


Q ss_pred             CCCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          158 DMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       158 DL~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      |+........+.+.+.     ..+..++.+|+++|.|+.++.+.+.+.
T Consensus       137 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  184 (190)
T 2h57_A          137 DLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ  184 (190)
T ss_dssp             TSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             CcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence            9976433333333332     124578899999999999887766543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.17  E-value=2.1e-07  Score=82.18  Aligned_cols=57  Identities=18%  Similarity=0.246  Sum_probs=40.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++.. ......+++|.+.  ..+..+.   .+.++||||.-
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   93 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE   93 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence            45799999999999999999999754 3333344555443  3444443   57899999964

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.17  E-value=8.4e-07  Score=79.27  Aligned_cols=55  Identities=25%  Similarity=0.327  Sum_probs=39.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccc--cCCCCCceeEEEEEEeCCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|||||||+|+|.+.....  .+..|+++.+.    ....+.++||||.-.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~   67 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVK   67 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHH
Confidence            45789999999999999999999765221  13344444332    245789999999853

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.16  E-value=9.1e-07  Score=88.59  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .-|+|+|.+|+|||||+|.|.+.
T Consensus        68 ~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           68 VAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHhhh
Confidence            35899999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.14  E-value=4e-06  Score=72.59  Aligned_cols=105  Identities=13%  Similarity=0.076  Sum_probs=69.7

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      ...+.+||..        |+ ..........+..+|++++|+|+..+.+..+.  .+..+.     .+.|+++|+||+|+
T Consensus        69 ~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  139 (195)
T 3bc1_A           69 RIHLQLWDTA--------GL-ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL  139 (195)
T ss_dssp             EEEEEEEEEC--------CS-GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred             EEEEEEEeCC--------Cc-HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            4567888842        22 33344556778999999999999765443321  122222     36899999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+...  .....++....+..++++|+++|.|+.++.+.+.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  182 (195)
T 3bc1_A          140 EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL  182 (195)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            75321  122223344557889999999999999887666544

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.14  E-value=3.5e-06  Score=73.50  Aligned_cols=105  Identities=8%  Similarity=0.013  Sum_probs=68.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~D  158 (383)
                      .+..+.+||.        ||+ .+........+..+|++++|+|+.++.+...  ..+..++     .+.|+++|+||+|
T Consensus        65 ~~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D  135 (188)
T 1zd9_A           65 GNVTIKLWDI--------GGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD  135 (188)
T ss_dssp             TTEEEEEEEE--------CCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred             CCEEEEEEEC--------CCC-HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCC
Confidence            3567788884        232 3445555677899999999999976543322  1233332     3679999999999


Q ss_pred             CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +........+.+.+.     ..+..++++|+++|.|+.++.+.+.+
T Consensus       136 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  181 (188)
T 1zd9_A          136 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ  181 (188)
T ss_dssp             STTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHH
Confidence            986433333333332     12346788999999999988766544

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.14  E-value=2.9e-06  Score=82.49  Aligned_cols=26  Identities=23%  Similarity=0.410  Sum_probs=23.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRM  242 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~  242 (383)
                      .++|++||.+|||||||+|+|+|...
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~   59 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDF   59 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCc
Confidence            34899999999999999999998653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.13  E-value=4.1e-06  Score=74.65  Aligned_cols=103  Identities=15%  Similarity=0.170  Sum_probs=69.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh---------cCCCeEEEEEcc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---------GNRKRILVLNRE  157 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l---------~~k~~ilVlNK~  157 (383)
                      ...+.+||.        ||+ ..........+..+|++++|+|+.++.+..+  +..++         .+.|+++|+||+
T Consensus        83 ~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~  151 (217)
T 2f7s_A           83 KVHLQLWDT--------AGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKA  151 (217)
T ss_dssp             EEEEEEEEE--------ESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECT
T ss_pred             eEEEEEEEC--------CCc-HhHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECC
Confidence            456778873        554 4556666688999999999999876543222  22222         256899999999


Q ss_pred             CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      |+.+...  .....++....+..++.+|+++|.|+.++.+.+.+.
T Consensus       152 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  196 (217)
T 2f7s_A          152 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL  196 (217)
T ss_dssp             TCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             ccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            9975321  122223334557789999999999999887665543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.13  E-value=9e-07  Score=76.24  Aligned_cols=56  Identities=21%  Similarity=0.149  Sum_probs=31.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-C--CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G--KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~--~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+..  ......+|+.+...  +.+ +  -.+.++||||.-
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   67 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQE   67 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSC--CC----------CBCCCC-------CEEECCCC-C
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCCh
Confidence            35789999999999999999999754  23333444433211  111 2  235699999974

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.13  E-value=4e-06  Score=70.51  Aligned_cols=107  Identities=15%  Similarity=0.054  Sum_probs=70.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD  164 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~  164 (383)
                      +..+.+||..-....  ........+.....+..+|++++|+|+..+.......+..++.  +.|+++|+||+|+.+..+
T Consensus        48 ~~~~~l~Dt~G~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  125 (161)
T 2dyk_A           48 RGRFLLVDTGGLWSG--DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL  125 (161)
T ss_dssp             TEEEEEEECGGGCSS--SSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG
T ss_pred             CceEEEEECCCCCCc--cchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH
Confidence            346778885322110  0001223455557789999999999998876655555555543  789999999999976531


Q ss_pred             HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762          165 RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       165 ~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                        . ...+.+.+. .++.+|+++|.|+.++.+.+.
T Consensus       126 --~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  157 (161)
T 2dyk_A          126 --Y-LGPLYGLGFGDPIPTSSEHARGLEELLEAIW  157 (161)
T ss_dssp             --G-CGGGGGGSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred             --h-HHHHHhCCCCCeEEEecccCCChHHHHHHHH
Confidence              1 111224565 689999999999988866543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.13  E-value=2.9e-07  Score=94.29  Aligned_cols=56  Identities=30%  Similarity=0.522  Sum_probs=44.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe----CCcEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~i~l~DTpG~  272 (383)
                      ++++|+++|.+|+|||||+|+|++.. ......+|+|.+.....+    +..+.++||||.
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh   62 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH   62 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCCh
Confidence            45689999999999999999999765 445577899998643332    346899999996

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.12  E-value=3.1e-06  Score=73.53  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=36.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+... .....|.+.... ..+.++.   .+.++||||.-
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   66 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP   66 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCCh
Confidence            357899999999999999999997542 221122221111 1223322   47899999964

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.12  E-value=3.6e-06  Score=70.92  Aligned_cols=104  Identities=9%  Similarity=-0.054  Sum_probs=67.7

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL  159 (383)
                      ...+.+||.        ||+ ..........+..+|.++.|+|+.++.+....     ++.....  +.|+++|+||+|+
T Consensus        51 ~~~~~l~D~--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  121 (168)
T 1u8z_A           51 EVQIDILDT--------AGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL  121 (168)
T ss_dssp             EEEEEEEEC--------CC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred             EEEEEEEEC--------CCc-chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence            356778884        332 33344555678999999999999865432221     1222222  6899999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+..+  ...........+..++.+|+++|.|+.++.+.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  163 (168)
T 1u8z_A          122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR  163 (168)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence            65321  22333444556788999999999999988665543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.12  E-value=9.3e-06  Score=82.25  Aligned_cols=105  Identities=18%  Similarity=0.190  Sum_probs=73.3

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADR  165 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~  165 (383)
                      ..+.+||        .||| ..+.+.+...+..+|++++|+|+..+......+...++  .+.|.++|+||+|+.+.+..
T Consensus        73 ~~i~iiD--------tPGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~  143 (482)
T 1wb1_A           73 YRITLVD--------APGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEI  143 (482)
T ss_dssp             EEEEECC--------CSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHH
T ss_pred             EEEEEEE--------CCCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhH
Confidence            4566666        3787 56677777889999999999999875433222211122  36788999999999986433


Q ss_pred             H----HHHHHHHHc----CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          166 N----AWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       166 ~----~w~~~l~~~----g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      .    ...+++...    +..++++|+++|.|+.+|.+.+.+..
T Consensus       144 ~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i  187 (482)
T 1wb1_A          144 KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL  187 (482)
T ss_dssp             HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence            2    233344444    36789999999999999887776644

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.12  E-value=2.7e-06  Score=73.04  Aligned_cols=104  Identities=11%  Similarity=0.087  Sum_probs=64.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---h-cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L-GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~---l-~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..        |+ ..........+..+|++++|+|+..+.+..+.  .+..+   . .+.|+++|+||+|+.
T Consensus        59 ~~~~~~~Dt~--------G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  129 (180)
T 2g6b_A           59 KVKLQMWDTA--------GQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA  129 (180)
T ss_dssp             EEEEEEEECC--------CC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred             EEEEEEEeCC--------Cc-HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence            3567788843        22 33344445668999999999999875433221  11111   1 367899999999998


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +...  .....+.....+..++++|+++|.|+.++.+.+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  170 (180)
T 2g6b_A          130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK  170 (180)
T ss_dssp             SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            5321  12222334455778999999999999988666544

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.12  E-value=1.5e-06  Score=73.92  Aligned_cols=105  Identities=12%  Similarity=0.058  Sum_probs=68.5

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||..-.         ..........+..+|++++|+|+.++.+...  ..+..++     .+.|+++|+||+|+
T Consensus        50 ~~~~~~~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  120 (171)
T 1upt_A           50 NLKFQVWDLGGL---------TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM  120 (171)
T ss_dssp             TEEEEEEEECCC---------GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             CEEEEEEECCCC---------hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence            566788884322         2222333456789999999999987754322  2233333     36799999999999


Q ss_pred             CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+......+.+.+.     ..+..++++|+++|.|+.++.+.+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  166 (171)
T 1upt_A          121 EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET  166 (171)
T ss_dssp             TTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHH
Confidence            87533333433332     224468899999999999887665443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.11  E-value=2.4e-06  Score=74.07  Aligned_cols=105  Identities=12%  Similarity=0.083  Sum_probs=68.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||.        ||+ ..........+..+|++++|+|+.++.+..+  ..+..++     .+.|+++|+||+|+
T Consensus        61 ~~~~~~~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  131 (186)
T 1ksh_A           61 GFKLNIWDV--------GGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL  131 (186)
T ss_dssp             TEEEEEEEE--------CCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             CEEEEEEEC--------CCC-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence            466778884        332 3344444567899999999999987654322  1233332     25799999999999


Q ss_pred             CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+........+.+.     ..+..++.+|+++|.|+.++.+.+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  177 (186)
T 1ksh_A          132 PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD  177 (186)
T ss_dssp             TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHH
Confidence            86543333333332     224568889999999999887665443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.11  E-value=2.8e-06  Score=73.93  Aligned_cols=56  Identities=23%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCC-CCCceeEEEEEEe--------CCcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF--------GKDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pgtT~~~~~~~~--------~~~i~l~DTpG~i  273 (383)
                      ++|+++|.+|||||||+|+|.+......+. .|.++.+.....+        ...+.++||+|.-
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   67 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE   67 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence            579999999999999999999753222222 2333344332221        2357899999974

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.11  E-value=6.1e-06  Score=78.50  Aligned_cols=112  Identities=15%  Similarity=0.050  Sum_probs=74.5

Q ss_pred             cCCCcEEEEcCCCCCcCCCchH--HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGH--IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNRED  158 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh--~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~D  158 (383)
                      ..+..+++||.....   .|.+  .+.+.+.....+..+|++++|+|+..+.+..+..+...+.    +.|+++|+||+|
T Consensus        52 ~~~~~l~l~DTpG~~---~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~D  128 (301)
T 1wf3_A           52 EGRRQIVFVDTPGLH---KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD  128 (301)
T ss_dssp             ETTEEEEEEECCCCC---CCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGG
T ss_pred             eCCcEEEEecCcccc---chhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcc
Confidence            346778899954322   2211  1224455567789999999999998876655444433332    689999999999


Q ss_pred             CCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       159 L~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +.+... ...+.+.+ .....++++|+++|.|+.+|.+.+.+.
T Consensus       129 l~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~  170 (301)
T 1wf3_A          129 AAKYPEEAMKAYHEL-LPEAEPRMLSALDERQVAELKADLLAL  170 (301)
T ss_dssp             GCSSHHHHHHHHHHT-STTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             cCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHh
Confidence            986554 33333333 112468899999999998887766543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.10  E-value=2.5e-06  Score=74.54  Aligned_cols=56  Identities=20%  Similarity=0.127  Sum_probs=39.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+..  .......|+.+..  .+.++.   .+.++||||.-
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~   77 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE   77 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCc
Confidence            34789999999999999999999764  2334444444322  233332   46789999974

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.10  E-value=6.2e-06  Score=71.99  Aligned_cols=57  Identities=28%  Similarity=0.303  Sum_probs=36.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++... .....|........+.++.   .+.++||||.-
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~   78 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGTY-VQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP   78 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSSC-CCCCCTTCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCCcceEEEEEEECCEEEEEEEEECCCCh
Confidence            457999999999999999999987542 2112221111112333432   35679999973

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.10  E-value=3.1e-06  Score=74.48  Aligned_cols=57  Identities=18%  Similarity=0.221  Sum_probs=36.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCC-CCCceeEEEEEEe----CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF----GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pgtT~~~~~~~~----~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|.|.++....... ...+++.... .+    ...+.++||||--
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~Dt~G~~   80 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKD-DISNSSFVNFQIWDFPGQM   80 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEE-EECCTTSCCEEEEECCSSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeee-eccCCCeeEEEEEECCCCH
Confidence            45789999999999999999998753222111 1122222222 22    2468999999974

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.10  E-value=3.6e-06  Score=75.45  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=36.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-E-EEEeC---CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-K-WVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~-~~~~~---~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++...  ......|+.+. . .+.++   -.+.++||||.-
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   86 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSP   86 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence            457899999999999999999997642  22222222222 1 12222   247899999964

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.09  E-value=3e-06  Score=73.68  Aligned_cols=105  Identities=10%  Similarity=0.115  Sum_probs=67.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||..        |+ .+........+..+|++++|+|+.++.+....  .+..+.     .+.|+++|+||+|+
T Consensus        59 ~~~~~i~Dt~--------G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  129 (187)
T 1zj6_A           59 NTRFLMWDIG--------GQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV  129 (187)
T ss_dssp             TEEEEEEECC--------C-----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred             CEEEEEEECC--------CC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence            4677888843        32 23333445678999999999999876543221  233332     36799999999999


Q ss_pred             CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ..........+.+.     ..+..++.+|+++|.|+.++.+.+.+.
T Consensus       130 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  175 (187)
T 1zj6_A          130 KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  175 (187)
T ss_dssp             TTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHH
Confidence            76322233333332     234578899999999999887665543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.07  E-value=7.4e-06  Score=81.13  Aligned_cols=104  Identities=17%  Similarity=0.249  Sum_probs=70.7

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-C---cHHHHHHhcCCCeEEEEEccCCCCHH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-T---HPLMDQWLGNRKRILVLNREDMISMA  163 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~-~---~~~l~~~l~~k~~ilVlNK~DL~~~~  163 (383)
                      ..+.+||.        ||| ..+.+.+...+..+|++++|+|+..+... .   ...+...+..+++++|+||+|+.+.+
T Consensus        83 ~~i~iiDt--------PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~  153 (410)
T 1kk1_A           83 RRVSFIDA--------PGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE  153 (410)
T ss_dssp             EEEEEEEC--------SSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred             cEEEEEEC--------CCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence            34667773        787 55666666778889999999999876411 1   11122223456899999999999865


Q ss_pred             HH----HHHHHHHHH---cCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          164 DR----NAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       164 ~~----~~w~~~l~~---~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ..    +.+.+++..   .+..++++|+++|.|+.+|.+.+.+.
T Consensus       154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~  197 (410)
T 1kk1_A          154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  197 (410)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence            32    233334432   24678999999999999887777653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.07  E-value=9.7e-06  Score=69.74  Aligned_cols=105  Identities=8%  Similarity=-0.093  Sum_probs=69.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL  159 (383)
                      ...+.+||..-.         ..........+..+|.+++|+|+.++.+....     ++.....  +.|+++|+||+|+
T Consensus        65 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  135 (187)
T 2a9k_A           65 EVQIDILDTAGQ---------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL  135 (187)
T ss_dssp             EEEEEEEECCCT---------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred             EEEEEEEECCCC---------cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            356788885332         12233445678899999999999865432221     1222222  6899999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+...  .....++....+..++++|+++|.|+.++.+.+.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  178 (187)
T 2a9k_A          136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE  178 (187)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence            65321  233444455667889999999999999886665443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.07  E-value=3.2e-06  Score=75.11  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=38.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|.+...  ......|+.+..  .+.++.   .+.++||||.-
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~   68 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE   68 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcH
Confidence            357899999999999999999997542  233334443322  223332   57899999984

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.06  E-value=8.7e-06  Score=82.44  Aligned_cols=112  Identities=13%  Similarity=0.147  Sum_probs=72.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHH-HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAK-TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD  164 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~-~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~  164 (383)
                      .+..+.+||..-.... +....+. ..+...+.++++|++|+|+|+..+.+..+.++.+.+.++|+++|+||+||.+...
T Consensus       289 ~g~~~~l~DTaG~~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~  367 (482)
T 1xzp_A          289 RGILFRIVDTAGVRSE-TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKIN  367 (482)
T ss_dssp             TTEEEEEEESSCCCSS-CCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCC
T ss_pred             CCeEEEEEECCCcccc-chhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccC
Confidence            3567888886432201 1100000 1133456789999999999998876655555555566899999999999975322


Q ss_pred             HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          165 RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       165 ~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .....+++ ..+..++++|+++|.|+++|.+.+.+
T Consensus       368 ~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~  401 (482)
T 1xzp_A          368 EEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYR  401 (482)
T ss_dssp             HHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             HHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            22222222 23357899999999999998776654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.06  E-value=4.7e-06  Score=74.25  Aligned_cols=57  Identities=21%  Similarity=0.310  Sum_probs=37.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE-EEEeCC---cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~-~~~~~~---~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++... .....|.+..+.. .+.++.   .+.++||||.-
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   87 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP   87 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence            357899999999999999999997642 2222232222221 223332   47899999964

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.05  E-value=5.5e-06  Score=78.61  Aligned_cols=56  Identities=20%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeC-Cc--EEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG-KD--LEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~-~~--i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|++++..  ..+...+||.+...  +.++ ..  +.++||||.-
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~  214 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE  214 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCch
Confidence            45789999999999999999999654  34555667766433  2332 33  4599999974

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.05  E-value=6.8e-06  Score=84.21  Aligned_cols=84  Identities=15%  Similarity=0.195  Sum_probs=46.8

Q ss_pred             CCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEE------EEE
Q 016762          187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLK------WVR  259 (383)
Q Consensus       187 g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~------~~~  259 (383)
                      ..|+..+.+.++++.+.....  ........++|++||.||||||||+|+|++.... ...++.|.+-...      .+.
T Consensus        13 ~~g~~~i~~yl~~l~~~~~~g--~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~   90 (535)
T 3dpu_A           13 KQGKEAVRQYFQSIEEARSKG--EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLE   90 (535)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTT--CCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGT
T ss_pred             HhCHHHHHHHHHHHHHhhccC--cccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEecccccccee
Confidence            456777777777765422110  1101234589999999999999999999976421 1112222222211      011


Q ss_pred             e-----CCcEEEEecCcc
Q 016762          260 F-----GKDLEFLDSPGI  272 (383)
Q Consensus       260 ~-----~~~i~l~DTpG~  272 (383)
                      +     +..+.++||||.
T Consensus        91 ~~~~~~~~~~~i~Dt~G~  108 (535)
T 3dpu_A           91 NDDELKECLFHFWDFGGQ  108 (535)
T ss_dssp             TCSTTTTCEEEEECCCSC
T ss_pred             ecCCCceEEEEEEECCcH
Confidence            1     245899999994

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.05  E-value=5e-06  Score=72.29  Aligned_cols=58  Identities=10%  Similarity=0.116  Sum_probs=37.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCC-------CCCceeEEEEEE-----eC---CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVR-----FG---KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-------~pgtT~~~~~~~-----~~---~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|.|.+........       ....|.......     ++   ..+.++||||.-
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   85 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV   85 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence            35789999999999999999998754322111       122344333221     11   147899999964

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.05  E-value=2.5e-06  Score=73.53  Aligned_cols=84  Identities=11%  Similarity=-0.096  Sum_probs=54.8

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcC
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL  186 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~  186 (383)
                      ..+..+|.++.|+|..++.+....     ++....  .+.|+++|+||+|+.....  .....+.....+..++.+|+++
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (181)
T 3t5g_A           73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKE  152 (181)
T ss_dssp             GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTS
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCC
Confidence            457789999999999765433221     111221  2679999999999964321  1222233445677899999999


Q ss_pred             CCchhhhhHHHHH
Q 016762          187 GMGTMKLSRLAKA  199 (383)
Q Consensus       187 g~Gi~~L~~~l~~  199 (383)
                      |.|+.++.+.+.+
T Consensus       153 ~~~v~~l~~~l~~  165 (181)
T 3t5g_A          153 NQTAVDVFRRIIL  165 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9998887655543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.05  E-value=4.2e-06  Score=71.54  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=68.3

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l-~~k~~ilVlNK~DL  159 (383)
                      ....+.+||..        |+ ..........+..+|++++|+|+..+.+..+..     +.... .+.|+++|+||+|+
T Consensus        62 ~~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  132 (179)
T 1z0f_A           62 QKIKLQIWDTA--------GQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL  132 (179)
T ss_dssp             EEEEEEEEECT--------TG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             eEEEEEEEECC--------CC-hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence            34567888843        32 233444557789999999999998754332211     11111 26789999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      .+...  .....++....+..++++|+++|.|+.++.+.+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  173 (179)
T 1z0f_A          133 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  173 (179)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            64321  2233344556678899999999999988865543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.04  E-value=8.2e-06  Score=71.91  Aligned_cols=57  Identities=18%  Similarity=0.320  Sum_probs=37.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCC--ceeEEEEEEeCC---cEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG--VTRVLKWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg--tT~~~~~~~~~~---~i~l~DTpG~i~  274 (383)
                      .++|+++|.+|||||||+|+|++... .....|.  ++.....+.++.   .+.++||||.-.
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~   66 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER   66 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCC-CC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence            46899999999999999999998642 2222233  333333444443   356799999753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.04  E-value=2.9e-06  Score=81.64  Aligned_cols=53  Identities=19%  Similarity=0.318  Sum_probs=36.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~  272 (383)
                      ..++|+|+|.+|||||||+|+|++...  +...|  |.+....  .. +..+.++||||-
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~--~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~  219 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQ  219 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCC--EEEEE--ETTEEEEEEEETTEEEEEEECC--
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCC--CCccc--ccceEEEEEecCcEEEEEEECCCC
Confidence            356899999999999999999997653  22333  4443332  22 346889999994

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.01  E-value=5.2e-06  Score=71.32  Aligned_cols=105  Identities=11%  Similarity=0.062  Sum_probs=68.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..-        | ..........+..+|++++|+|+.++.+....  .+..+.    .+.|+++|+||+|+.
T Consensus        60 ~~~~~i~Dt~G--------~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  130 (181)
T 2efe_B           60 TVKFEIWDTAG--------Q-ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL  130 (181)
T ss_dssp             EEEEEEEECCC--------S-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EEEEEEEeCCC--------C-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence            45678888432        2 22333445678999999999998765432211  111221    157899999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +...  .....++....+..++++|+++|.|+.++.+.+.+.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  172 (181)
T 2efe_B          131 DARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARR  172 (181)
T ss_dssp             TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHT
T ss_pred             ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5332  233334445567889999999999999887665443

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.01  E-value=2.9e-06  Score=73.55  Aligned_cols=102  Identities=10%  Similarity=0.091  Sum_probs=65.5

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||..-.         .+........+..+|++++|+|+.++.+..+.  .+..++     .+.|+++|+||+||
T Consensus        64 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  134 (181)
T 2h17_A           64 NTRFLMWDIGGQ---------ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV  134 (181)
T ss_dssp             TEEEEEEEESSS---------GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred             CEEEEEEECCCC---------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence            467888884332         22223334568999999999999876443321  233333     36789999999999


Q ss_pred             CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ........+.+.+.     ..+..++.+|+++|.|+.++.+.+
T Consensus       135 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  177 (181)
T 2h17_A          135 KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM  177 (181)
T ss_dssp             TTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence            76322233323221     123468899999999998876654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.01  E-value=1.1e-05  Score=70.76  Aligned_cols=57  Identities=16%  Similarity=0.332  Sum_probs=38.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC-c--EEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK-D--LEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~-~--i~l~DTpG~i~  274 (383)
                      .++|+++|.+|||||||+|+|++... .....|.++.+  ...+.++. .  +.+.||+|.-.
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~   90 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER   90 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence            47899999999999999999997642 22333433333  33444443 3  45699999753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.00  E-value=3.7e-05  Score=69.29  Aligned_cols=112  Identities=11%  Similarity=-0.046  Sum_probs=66.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHH-HH-HHHHHHHhhhcCeEEEEEecCCCCCCCcH---HH-HHHhc---CCCeEEEEEcc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIA-KT-EKELKDQLKLMDVVIEVRDARIPLSTTHP---LM-DQWLG---NRKRILVLNRE  157 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~-~~-~~~l~~~idr~DlILeV~DaR~p~~~~~~---~l-~~~l~---~k~~ilVlNK~  157 (383)
                      +..+.+||......  ++...+ .. ...+......+|++++|+|+..+.+....   .+ ..+..   +.|+++|+||+
T Consensus        75 ~~~~~l~DtpG~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~  152 (228)
T 2qu8_A           75 LNKYQIIDTPGLLD--RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKI  152 (228)
T ss_dssp             TEEEEEEECTTTTT--SCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECG
T ss_pred             CCeEEEEECCCCcC--cccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCc
Confidence            45688898643310  000001 00 12233456788999999999887654322   12 22222   68999999999


Q ss_pred             CCCCHHHH-----HHHHHHHHHcC--CeEEEeeCcCCCchhhhhHHHHHh
Q 016762          158 DMISMADR-----NAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       158 DL~~~~~~-----~~w~~~l~~~g--~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      |+.+....     ..........+  ..++++|+++|.|+.++.+.+.+.
T Consensus       153 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  202 (228)
T 2qu8_A          153 DKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL  202 (228)
T ss_dssp             GGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHH
Confidence            99865321     12222333444  678899999999999887665543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.00  E-value=1.2e-05  Score=69.81  Aligned_cols=104  Identities=14%  Similarity=0.118  Sum_probs=67.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||..-   |      ..........+..+|++++|+|+.++.+...  ..+..++     .+.|+++|+||+|+
T Consensus        59 ~~~l~i~Dt~G---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  129 (181)
T 1fzq_A           59 GFKLNVWDIGG---Q------RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL  129 (181)
T ss_dssp             TEEEEEEECSS---C------GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred             CEEEEEEECCC---C------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence            56778888532   2      2233444567899999999999986543322  1233332     25799999999999


Q ss_pred             CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+........+.+.     ..+..++.+|+++|.|+.++.+.+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  174 (181)
T 1fzq_A          130 LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK  174 (181)
T ss_dssp             TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHH
Confidence            76433333333221     12346788999999999888666543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.00  E-value=2e-06  Score=87.20  Aligned_cols=56  Identities=23%  Similarity=0.453  Sum_probs=34.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCc------cccCCCCCceeEEEE--EEe-CCcEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRM------CPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~------~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~  272 (383)
                      .++|+++|.+|+|||||+|+|++...      ...+..+|+|.+...  +.. +..+.++||||.
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh   83 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH   83 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence            57899999999999999999997651      334567889988643  233 347899999997

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.99  E-value=3.6e-06  Score=71.94  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=67.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..-   +      ..........+..+|++++|+|+.++.+....  .+..+.    .+.|+++|+||+|+.
T Consensus        62 ~~~~~~~Dt~G---~------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  132 (179)
T 2y8e_A           62 TVRLQLWDTAG---Q------ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS  132 (179)
T ss_dssp             EEEEEEEEECC---S------GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred             EEEEEEEECCC---c------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence            35677888432   2      22233444678899999999999765432221  122211    267899999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +...  ...........+..++.+|+++|.|+.++.+.+.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  173 (179)
T 2y8e_A          133 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  173 (179)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            5432  22333444556788999999999999888766544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.99  E-value=4.4e-06  Score=74.19  Aligned_cols=107  Identities=11%  Similarity=0.017  Sum_probs=66.1

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNRED  158 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l----~~~l~~k~~ilVlNK~D  158 (383)
                      .....+.+||......  |       .......+..+|++++|+|..++.+..+.  .+    .....+.|+++|+||+|
T Consensus        54 ~~~~~~~i~Dt~G~~~--~-------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  124 (212)
T 2j0v_A           54 GQIVNLGLWDTAGQED--Y-------SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD  124 (212)
T ss_dssp             SCEEEEEEECCCCCCC--C-------CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred             CEEEEEEEEECCCcHH--H-------HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHH
Confidence            3445778888543321  1       11222467899999999998765433221  11    11122789999999999


Q ss_pred             CCCHHH----------HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHh
Q 016762          159 MISMAD----------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       159 L~~~~~----------~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +.....          .....+.....+. .++++|+++|.|+.++.+.+.+.
T Consensus       125 l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  177 (212)
T 2j0v_A          125 LRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV  177 (212)
T ss_dssp             HHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHH
Confidence            965432          1222223344564 78999999999999886655443

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.99  E-value=1.1e-06  Score=89.18  Aligned_cols=57  Identities=26%  Similarity=0.406  Sum_probs=44.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ++++|+++|.+|+|||||+|+|++.. +..+..+|+|.+.....+   +..+.++||||.-
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe   62 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHA   62 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcH
Confidence            45679999999999999999998643 445666888887644333   4578999999974

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.99  E-value=4.2e-06  Score=80.89  Aligned_cols=24  Identities=54%  Similarity=0.833  Sum_probs=21.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      ....++|+|.||||||||+|.|.+
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999973

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.98  E-value=1.1e-06  Score=88.49  Aligned_cols=58  Identities=21%  Similarity=0.324  Sum_probs=40.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC-cc-----------------------------ccCCCCCceeEEEEEEe---CC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MC-----------------------------PAAPRPGVTRVLKWVRF---GK  262 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~-----------------------------~v~~~pgtT~~~~~~~~---~~  262 (383)
                      ..++|+++|.+|+|||||+|+|++.. ..                             ..+...|+|.+.....+   +.
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~   85 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence            35789999999999999999998541 00                             00113678877543333   34


Q ss_pred             cEEEEecCccc
Q 016762          263 DLEFLDSPGII  273 (383)
Q Consensus       263 ~i~l~DTpG~i  273 (383)
                      .+.++||||.-
T Consensus        86 ~~~iiDtPGh~   96 (458)
T 1f60_A           86 QVTVIDAPGHR   96 (458)
T ss_dssp             EEEEEECCCCT
T ss_pred             eEEEEECCCcH
Confidence            68999999953

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.98  E-value=1.3e-05  Score=69.15  Aligned_cols=106  Identities=12%  Similarity=-0.065  Sum_probs=65.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---h--cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L--GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~---l--~~k~~ilVlNK~D  158 (383)
                      ....+.+||...   +      ..........+..+|.++.|+|+.++.+....  .+..+   .  .+.|+++|+||+|
T Consensus        50 ~~~~~~i~Dt~G---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D  120 (189)
T 4dsu_A           50 ETCLLDILDTAG---Q------EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD  120 (189)
T ss_dssp             EEEEEEEEECCC---C---------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred             cEEEEEEEECCC---c------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence            334566788432   2      23333444678889999999999865332221  11111   1  2679999999999


Q ss_pred             CCCHHHHH-HHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          159 MISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       159 L~~~~~~~-~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +.+..... .........+..++++|+++|.|+.++.+.+.+.
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  163 (189)
T 4dsu_A          121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE  163 (189)
T ss_dssp             SSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            97543211 1222234457789999999999999886655443

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.98  E-value=4.5e-06  Score=82.66  Aligned_cols=103  Identities=19%  Similarity=0.227  Sum_probs=63.1

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC----cHHHHHHhcCCCeEEEEEccCCCCHH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT----HPLMDQWLGNRKRILVLNREDMISMA  163 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~----~~~l~~~l~~k~~ilVlNK~DL~~~~  163 (383)
                      ..+.+||.        ||| ..+.+.+...+..+|++++|+|+..+....    ...+...+..+|+++++||+|+.+.+
T Consensus        81 ~~i~iiDt--------PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~  151 (408)
T 1s0u_A           81 RRVSFVDS--------PGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK  151 (408)
T ss_dssp             EEEEEEEC--------SSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred             cEEEEEEC--------CCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence            34667773        777 455666656677889999999998764111    11122223356899999999998653


Q ss_pred             H----HHHHHHHHHH---cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          164 D----RNAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       164 ~----~~~w~~~l~~---~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .    .+...+++.+   .+..++++|+++|.|+.+|.+.+.+
T Consensus       152 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~  194 (408)
T 1s0u_A          152 QAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQD  194 (408)
T ss_dssp             TTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            2    2333344433   2467899999999999988777765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.97  E-value=4.8e-06  Score=81.23  Aligned_cols=58  Identities=29%  Similarity=0.377  Sum_probs=30.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCC------CceeEEE--EEEe--C---CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVLK--WVRF--G---KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p------gtT~~~~--~~~~--~---~~i~l~DTpG~i  273 (383)
                      ..++|++||.+|+|||||+|+|.+......+..+      ..|....  ...+  +   ..+.++||||+-
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g  106 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG  106 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence            4578999999999999999999876543322221      2233322  2222  1   147899999994

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.97  E-value=3.3e-06  Score=82.73  Aligned_cols=47  Identities=21%  Similarity=0.393  Sum_probs=37.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      +|+++|.+|+|||||+|+|+         ..|+|.+.....+   +..+.++||||...
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~   72 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK   72 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence            69999999999999999998         3467777655444   45689999999853

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.97  E-value=4.6e-06  Score=82.64  Aligned_cols=41  Identities=27%  Similarity=0.341  Sum_probs=30.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc--cccCCCCCceeEEE
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLK  256 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pgtT~~~~  256 (383)
                      ..++|+++|.+|+|||||+|+|++...  ......+|+|.+..
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~   51 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG   51 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEe
Confidence            457899999999999999999996532  22333578887653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.97  E-value=5e-06  Score=83.07  Aligned_cols=26  Identities=38%  Similarity=0.466  Sum_probs=22.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      ..++|+++|.+|+|||||+|+|++..
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhc
Confidence            34789999999999999999998653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.22  E-value=9.7e-07  Score=78.09  Aligned_cols=56  Identities=23%  Similarity=0.211  Sum_probs=37.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CC--cEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK--DLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~--~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|||||||+|+|++..  .......+|.+...  +.. +.  .+.++||||.-
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~   89 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE   89 (204)
Confidence            35789999999999999999998643  23333444444322  122 22  35599999974

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.97  E-value=8.5e-06  Score=71.37  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=66.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..-   +      .+........+..+|++++|+|+.++.+..+.     .+.... .+.|+++|+||+|+.
T Consensus        74 ~~~l~l~Dt~G---~------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~  144 (192)
T 2il1_A           74 KIRLQIWDTAG---Q------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE  144 (192)
T ss_dssp             EEEEEEEEECC---S------GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEeCCC---c------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            45678888432   2      23344455778999999999999875443321     111111 267899999999997


Q ss_pred             CHHH--HHHHHHHHHH-cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~-~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +..+  .....++... .+..++.+|+++|.|+.++.+.+.+
T Consensus       145 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  186 (192)
T 2il1_A          145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  186 (192)
T ss_dssp             GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            5322  1122222223 2577889999999999988665543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.97  E-value=2.8e-05  Score=68.17  Aligned_cols=104  Identities=8%  Similarity=-0.085  Sum_probs=67.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~DL  159 (383)
                      ...+.+||....         ..........+..+|.++.|+|+.++.+....     ++.....  +.|+++|+||+|+
T Consensus        61 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  131 (206)
T 2bov_A           61 EVQIDILDTAGQ---------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL  131 (206)
T ss_dssp             EEEEEEEECCCT---------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred             EEEEEEEcCCCh---------hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence            356788885332         12233444678899999999999865432221     1222222  6899999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+...  ......+....+..++++|+++|.|+.++.+.+.+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  173 (206)
T 2bov_A          132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR  173 (206)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            75321  22333444556788999999999999988665544

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.96  E-value=1.1e-05  Score=81.74  Aligned_cols=99  Identities=18%  Similarity=0.195  Sum_probs=63.5

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHH------HHhcCCCeEEEEE
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMD------QWLGNRKRILVLN  155 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~----~~~~l~------~~l~~k~~ilVlN  155 (383)
                      .+..+.+||.        ||| +.+.+.+...+..+|++|+|+|+..+...    ...+..      ..+..+++++|+|
T Consensus       109 ~~~~~~iiDT--------PG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviN  179 (483)
T 3p26_A          109 HRANFTIVDA--------PGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN  179 (483)
T ss_dssp             SSCEEEEECC--------CCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCceEEEEEC--------CCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEE
Confidence            4556778874        555 55677777889999999999999876432    112211      1223467999999


Q ss_pred             ccCCCC--HHHHH----HHHHHHHHcC-----CeEEEeeCcCCCchhhh
Q 016762          156 REDMIS--MADRN----AWATYFAKQG-----TKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       156 K~DL~~--~~~~~----~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L  193 (383)
                      |+|+.+  .....    ...+++...|     ..++++|+++|.|+.++
T Consensus       180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            999986  22222    2223333333     36789999999999753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.96  E-value=6e-06  Score=72.28  Aligned_cols=106  Identities=11%  Similarity=0.014  Sum_probs=69.1

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL  159 (383)
                      ....+.+||..-   +      ..........+..+|++++|+|+.++.+.....  +..+.    .+.|+++|+||+|+
T Consensus        70 ~~~~~~i~Dt~G---~------~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl  140 (192)
T 2fg5_A           70 ELHKFLIWDTAG---Q------ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL  140 (192)
T ss_dssp             SEEEEEEEEECC---S------GGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEEEEcCCC---c------hhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence            445678888432   2      223334456789999999999998754322211  11111    26789999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+...  .....++..+.+..++++|++.|.|+.++.+.+.+.
T Consensus       141 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  183 (192)
T 2fg5_A          141 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ  183 (192)
T ss_dssp             GGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred             ccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence            74221  233334455567889999999999999887766543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.96  E-value=1.3e-05  Score=70.88  Aligned_cols=104  Identities=11%  Similarity=0.039  Sum_probs=67.7

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..-   |      .+........+..+|++++|+|+.++.+..+.  .+..+.    .+.|+++|+||+|+.
T Consensus        77 ~~~l~i~Dt~G---~------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  147 (201)
T 2hup_A           77 RVKLQIWDTAG---Q------ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS  147 (201)
T ss_dssp             EEEEEEECCTT---C------GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEEEEEECCC---c------HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence            45788888432   2      23344455778999999999998765432221  122221    357899999999997


Q ss_pred             CHHH--HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ....  .....+.....+. .++.+|+++|.|+.++.+.+.+
T Consensus       148 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  189 (201)
T 2hup_A          148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT  189 (201)
T ss_dssp             GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            5321  1222233445677 8899999999999988665543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.96  E-value=1.3e-05  Score=69.72  Aligned_cols=106  Identities=10%  Similarity=-0.036  Sum_probs=63.5

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~D  158 (383)
                      ...++.+||.        ||+ ..........+..+|+++.|+|+.++.+..+.     ++.....  +.|+++|+||+|
T Consensus        67 ~~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D  137 (190)
T 3con_A           67 ETCLLDILDT--------AGQ-EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCD  137 (190)
T ss_dssp             EEEEEEEEEC--------CC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred             EEEEEEEEEC--------CCh-HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCc
Confidence            3456888884        332 33344445678999999999998765432221     1222222  689999999999


Q ss_pred             CCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       159 L~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +.+... .....+.....+..++.+|+++|.|+.++.+.+.+.
T Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  180 (190)
T 3con_A          138 LPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE  180 (190)
T ss_dssp             CSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            975221 122223334557789999999999998886665443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.96  E-value=4.7e-06  Score=82.26  Aligned_cols=57  Identities=23%  Similarity=0.349  Sum_probs=41.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCc----cc-----------cCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRM----CP-----------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~----~~-----------v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      .++|+++|.+|+|||||+|+|++...    ..           .+...|+|.+.....+   +..+.++||||..
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~   77 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA   77 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence            46899999999999999999986310    00           1124678888655444   3578999999984

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.95  E-value=4.8e-06  Score=70.37  Aligned_cols=105  Identities=11%  Similarity=0.097  Sum_probs=67.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---hcCCCeEEEEEccCCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---LGNRKRILVLNREDMI  160 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~---l~~k~~ilVlNK~DL~  160 (383)
                      ....+.+||..        |+ ..........+..+|+++.|+|+..+.+....  .+..+   ..+.|+++|+||+|+.
T Consensus        52 ~~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  122 (168)
T 1z2a_A           52 EDVRLMLWDTA--------GQ-EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL  122 (168)
T ss_dssp             EEEEEEEECCT--------TG-GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred             EEEEEEEEcCC--------Cc-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence            34567888843        22 22223344678899999999999765432221  11222   2378999999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +...  .....+...+.+..++.+|+++|.|+.++.+.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  163 (168)
T 1z2a_A          123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  163 (168)
T ss_dssp             GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence            5321  22233344556788999999999999988666543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.95  E-value=1.1e-05  Score=81.51  Aligned_cols=83  Identities=20%  Similarity=0.100  Sum_probs=60.5

Q ss_pred             HHhhhcCeEEEEEecCCCCCC----CcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHc-CCeEEEeeCcCCCch
Q 016762          116 DQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGT  190 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~----~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~-g~~vi~iSa~~g~Gi  190 (383)
                      ..+..+|++|+|+|+..+.+.    ...++...+.++|+++|+||+|+.+......  +.+.+. ...++++|+++|.|+
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTTTBSH
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECCCCCH
Confidence            457899999999999987765    2333444445789999999999987654332  223332 357899999999999


Q ss_pred             hhhhHHHHHh
Q 016762          191 MKLSRLAKAL  200 (383)
Q Consensus       191 ~~L~~~l~~l  200 (383)
                      .+|.+.+.+.
T Consensus       386 ~eL~~~i~~~  395 (476)
T 3gee_A          386 DTLKQHMGDL  395 (476)
T ss_dssp             HHHHHHHTHH
T ss_pred             HHHHHHHHHH
Confidence            9887766543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.95  E-value=2.3e-05  Score=78.44  Aligned_cols=100  Identities=16%  Similarity=0.156  Sum_probs=65.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------CcHH-HHHH-hcCCC-eEEEEEc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPL-MDQW-LGNRK-RILVLNR  156 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~-------~~~~-l~~~-l~~k~-~ilVlNK  156 (383)
                      +..+.+||.        ||| +.+.+.+...+..+|++|+|+|++.+...       ...+ +..+ ..+.| +++|+||
T Consensus        94 ~~~~~iiDT--------PGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK  164 (439)
T 3j2k_7           94 KKHFTILDA--------PGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK  164 (439)
T ss_pred             CeEEEEEEC--------CCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeec
Confidence            345667773        676 66777777889999999999999986531       1111 1111 12455 8999999


Q ss_pred             cCCCCH----HH----HHHHHHHHHHcC------CeEEEeeCcCCCchhhhhH
Q 016762          157 EDMISM----AD----RNAWATYFAKQG------TKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       157 ~DL~~~----~~----~~~w~~~l~~~g------~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +|+...    ..    .....+++.+.|      ..++++|+++|.|+.++.+
T Consensus       165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            999642    11    122223343444      3588999999999988543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.95  E-value=3.9e-06  Score=73.73  Aligned_cols=105  Identities=12%  Similarity=0.077  Sum_probs=66.4

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D  158 (383)
                      .+..+.+||.        ||+ ..........++.+|++++|+|+.++.+...  ..+..++.     +.|+++|+||+|
T Consensus        71 ~~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D  141 (192)
T 2b6h_A           71 KNICFTVWDV--------GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD  141 (192)
T ss_dssp             TTEEEEEEEC--------C------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred             CCEEEEEEEC--------CCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC
Confidence            4567788884        333 2333444567899999999999987643222  12333332     679999999999


Q ss_pred             CCCHHHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+....+.+.+.+..     .+..++.+|+++|.|+.++.+.+.+
T Consensus       142 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  187 (192)
T 2b6h_A          142 MPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH  187 (192)
T ss_dssp             STTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHH
Confidence            9765333344333321     2345788999999999888665543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.94  E-value=5.1e-06  Score=70.25  Aligned_cols=104  Identities=12%  Similarity=0.042  Sum_probs=66.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      +..+.+||..-   +      ..........+..+|++++|+|+..+.+....  .+..+.    .+.|+++|.||+|+.
T Consensus        54 ~~~~~~~D~~G---~------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~  124 (170)
T 1r2q_A           54 TVKFEIWDTAG---Q------ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA  124 (170)
T ss_dssp             EEEEEEEEECC---S------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEeCCC---c------HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence            45677888432   2      22333445678999999999999765432221  112221    256788999999996


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +...  .....+.....+..++.+|+++|.|+.++.+.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~  165 (170)
T 1r2q_A          125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            5321  12233344456778899999999999988766543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.94  E-value=1.3e-05  Score=80.06  Aligned_cols=97  Identities=14%  Similarity=0.229  Sum_probs=64.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHHhcCCCeEEEEEccCCCC--
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMIS--  161 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~---l~~~l~~k~~ilVlNK~DL~~--  161 (383)
                      +..+.+||.        ||| ..+.+.+...+..+|++|+|+|++.+......+   +...+..+++++|+||+|+.+  
T Consensus       103 ~~~~~iiDt--------pGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~  173 (434)
T 1zun_B          103 KRKFIIADT--------PGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD  173 (434)
T ss_dssp             SEEEEEEEC--------CCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred             CceEEEEEC--------CCh-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence            345667773        555 445566667789999999999999765332222   112222346899999999986  


Q ss_pred             HHH----HHHHHHHHHHcC-----CeEEEeeCcCCCchhh
Q 016762          162 MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (383)
Q Consensus       162 ~~~----~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~  192 (383)
                      .+.    ...+.+++...|     ..++++|+++|.|+.+
T Consensus       174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence            222    233444455555     4678899999999886

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.93  E-value=1.7e-05  Score=66.64  Aligned_cols=104  Identities=13%  Similarity=-0.081  Sum_probs=66.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh--cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~---l~~~l--~~k~~ilVlNK~DL  159 (383)
                      ...+.+||..-.         ..........+..+|.++.|+|+.++.+..+.  .   +....  .+.|+++|+||+|+
T Consensus        50 ~~~~~l~D~~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  120 (167)
T 1kao_A           50 PSVLEILDTAGT---------EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL  120 (167)
T ss_dssp             EEEEEEEECCCT---------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred             EEEEEEEECCCc---------hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence            345778885332         12233344568899999999999865432221  1   22222  26899999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+..+  .........+.+..++++|+++|.|+.++.+.+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  162 (167)
T 1kao_A          121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR  162 (167)
T ss_dssp             GGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHH
Confidence            65322  12222333445778999999999999888666543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.93  E-value=4.2e-06  Score=80.93  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=26.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc------CCccccCCCCCcee
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK------RRMCPAAPRPGVTR  253 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~------~~~~~v~~~pgtT~  253 (383)
                      ....|+++|+||+|||||+|.|++      .+...++.-|++|.
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~   98 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV   98 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence            456799999999999999999963      33334444455443

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.93  E-value=1.9e-05  Score=66.55  Aligned_cols=105  Identities=10%  Similarity=-0.102  Sum_probs=65.4

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh--cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~---l~~~l--~~k~~ilVlNK~D  158 (383)
                      .+..+.+||..-..         .........+..+|.++.|+|+.++.+....  .   +....  .+.|+++|+||+|
T Consensus        49 ~~~~~~l~D~~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  119 (167)
T 1c1y_A           49 QQCMLEILDTAGTE---------QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD  119 (167)
T ss_dssp             CEEEEEEEEECSSC---------SSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTT
T ss_pred             EEEEEEEEECCChH---------HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcc
Confidence            34567788843321         1122334567889999999999865432221  1   22221  2689999999999


Q ss_pred             CCCHHH--HHHHHHHHHHc-CCeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMAD--RNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~--~~~w~~~l~~~-g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+...  ......+.... +..++++|+++|.|+.++.+.+.+
T Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  163 (167)
T 1c1y_A          120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR  163 (167)
T ss_dssp             CGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHH
Confidence            965321  12222233343 578899999999999988766543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.92  E-value=3.1e-06  Score=83.70  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=42.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC---Cc--cc-----c------CCCCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR---RM--CP-----A------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~---~~--~~-----v------~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      ..++|+++|.+|+|||||+|+|++.   ..  ..     .      +...|+|.+.....+   +..+.++||||...
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            3578999999999999999999863   10  00     0      114577877654443   35789999999863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.91  E-value=3.1e-05  Score=65.48  Aligned_cols=105  Identities=11%  Similarity=-0.030  Sum_probs=66.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HH---HHHHh---cCCCeEEEEEccC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL---GNRKRILVLNRED  158 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~---l~~~l---~~k~~ilVlNK~D  158 (383)
                      ...+.+||.....         .........+..+|.++.|+|+.++.+..+  ..   +....   .+.|+++|+||+|
T Consensus        50 ~~~~~~~Dt~G~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~D  120 (172)
T 2erx_A           50 ICTLQITDTTGSH---------QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD  120 (172)
T ss_dssp             EEEEEEEECCSCS---------SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGG
T ss_pred             EEEEEEEECCCch---------hhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccc
Confidence            3567888854321         122333456788999999999986543221  11   22221   2689999999999


Q ss_pred             CCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       159 L~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +.+..+.  ..........+..++++|+++|.|+.++.+.+.+.
T Consensus       121 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (172)
T 2erx_A          121 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNL  164 (172)
T ss_dssp             GGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred             cccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHH
Confidence            9754321  11122233456788999999999999887766554

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.90  E-value=2.5e-05  Score=66.12  Aligned_cols=106  Identities=16%  Similarity=0.031  Sum_probs=64.1

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc-----CCCeEEEEEc
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG-----NRKRILVLNR  156 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~idr~DlILeV~DaR~p~~~~~~--~l~~~l~-----~k~~ilVlNK  156 (383)
                      .....+.+||..-.         ......+. ..+..+|+++.|+|..++.+....  .+..+..     +.|+++|+||
T Consensus        48 ~~~~~~~i~D~~g~---------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK  118 (169)
T 3q85_A           48 KEEVTLIVYDIWEQ---------GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK  118 (169)
T ss_dssp             TEEEEEEEECCCCC-----------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred             CeEEEEEEEECCCc---------cccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence            34456778884322         22223233 457889999999999765433221  2222221     6899999999


Q ss_pred             cCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       157 ~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +|+.+...  .....++....+..++++|+++|.|+.++.+.+.+
T Consensus       119 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (169)
T 3q85_A          119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR  163 (169)
T ss_dssp             TTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHH
Confidence            99974321  12222334456788999999999999888655443

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.90  E-value=6.3e-06  Score=72.93  Aligned_cols=104  Identities=15%  Similarity=0.083  Sum_probs=65.6

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh---c-CCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL---G-NRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l---~-~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||..        |+ ..........+..+|++++|+|+..+.+....  .+..+.   . +.|+++|+||+|+..
T Consensus        69 ~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  139 (213)
T 3cph_A           69 VKLQLWDTA--------GQ-ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET  139 (213)
T ss_dssp             EEEEEECCT--------TG-GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred             EEEEEEeCC--------Cc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            567888843        32 22233345678999999999998765432211  111111   1 578999999999953


Q ss_pred             HHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          162 MAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       162 ~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ... ......+....+..++++|++.|.|+.++.+.+.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  179 (213)
T 3cph_A          140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  179 (213)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            321 111222334457789999999999999987666543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.90  E-value=2.3e-05  Score=68.30  Aligned_cols=106  Identities=14%  Similarity=0.022  Sum_probs=69.0

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HH-HHHh----cCCCeEEEEEccC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LM-DQWL----GNRKRILVLNRED  158 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~l-~~~l----~~k~~ilVlNK~D  158 (383)
                      .....+.+||.        ||+ ..........+..+|++++|+|+.++.+.... .+ ..+.    .+.|+++|+||+|
T Consensus        69 ~~~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D  139 (191)
T 3dz8_A           69 EKRVKLQIWDT--------AGQ-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD  139 (191)
T ss_dssp             TTTEEEEEECH--------HHH-HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred             CEEEEEEEEeC--------CCh-HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence            34556777773        554 55556666789999999999998764332211 11 1111    2678999999999


Q ss_pred             CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.....  ...........+..++.+|+++|.|+.++.+.+.+
T Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  182 (191)
T 3dz8_A          140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD  182 (191)
T ss_dssp             CGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            964321  11112233445788999999999999988665544

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.89  E-value=1.4e-05  Score=68.87  Aligned_cols=104  Identities=14%  Similarity=0.006  Sum_probs=64.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh--cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL--GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~---l~~~l--~~k~~ilVlNK~DL  159 (383)
                      ...+.+||....         ..........+..+|+++.|+|+.++.+....  .   +....  .+.|+++|+||+|+
T Consensus        65 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  135 (183)
T 3kkq_A           65 WAILDVLDTAGQ---------EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL  135 (183)
T ss_dssp             EEEEEEEECCSC---------GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred             EEEEEEEECCCc---------hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence            344566885332         22223334568889999999999875432221  1   11211  26789999999998


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCc-CCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQ-LGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~-~g~Gi~~L~~~l~~  199 (383)
                      .+...  .....+.....+..++.+|++ +|.|+.++.+.+.+
T Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~  178 (183)
T 3kkq_A          136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR  178 (183)
T ss_dssp             STTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred             hhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHH
Confidence            65221  112223334457889999999 99999988666544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.89  E-value=1.1e-05  Score=70.33  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=67.1

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---h-cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L-GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~---l-~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..-.         ..........+..+|++++|+|+.++.+....  .+..+   . .+.|+++|+||+|+.
T Consensus        64 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~  134 (196)
T 3tkl_A           64 TIKLQIWDTAGQ---------ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT  134 (196)
T ss_dssp             EEEEEEEEECCS---------GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EEEEEEEECCCc---------HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            356778885332         22333445678999999999998865432221  11111   1 167899999999997


Q ss_pred             CHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +....  ..........+..++.+|+++|.|+.++.+.+.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  175 (196)
T 3tkl_A          135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA  175 (196)
T ss_dssp             TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence            65321  2222334456788999999999999988665544

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.89  E-value=6.3e-06  Score=71.09  Aligned_cols=104  Identities=10%  Similarity=0.048  Sum_probs=58.2

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||.        ||+ ..........+..+|++++|+|+.++.+.....  +..+.    .+.|+++|+||+|+.+
T Consensus        57 ~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  127 (183)
T 2fu5_C           57 IKLQIWDT--------AGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND  127 (183)
T ss_dssp             EEEEEEEC------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred             EEEEEEcC--------CCC-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence            56777874        333 233333345688999999999998754322211  11111    2578999999999975


Q ss_pred             HHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       162 ~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ...  ......+....+..++.+|+++|.|+.++.+.+.+.
T Consensus       128 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  168 (183)
T 2fu5_C          128 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD  168 (183)
T ss_dssp             CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            321  122223344567889999999999999886665443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.88  E-value=7.6e-06  Score=69.16  Aligned_cols=103  Identities=12%  Similarity=0.042  Sum_probs=65.7

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||...   +      ..........+..+|++++|+|+.++.+..+..  +..+.    .+.|+++|+||+|+.
T Consensus        51 ~~~~~~~D~~G---~------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  121 (170)
T 1ek0_A           51 TVKFEIWDTAG---Q------ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL  121 (170)
T ss_dssp             EEEEEEEEECC---S------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEECCC---C------hhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence            45677888432   2      223334456789999999999998754332211  12221    267899999999997


Q ss_pred             CH---H-HH-HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          161 SM---A-DR-NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       161 ~~---~-~~-~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +.   . .. ....+.....+..++++|+++|.|+.++.+.+.
T Consensus       122 ~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (170)
T 1ek0_A          122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG  164 (170)
T ss_dssp             GSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            53   1 11 111223344578899999999999988866554

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.88  E-value=1.4e-05  Score=70.31  Aligned_cols=105  Identities=13%  Similarity=0.004  Sum_probs=67.3

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL  159 (383)
                      ....+.+||..        |+ .+........+..+|++++|+|+..+.+.....  +..+.    .+.|+++|+||+|+
T Consensus        55 ~~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  125 (203)
T 1zbd_A           55 KRIKLQIWDTA--------GL-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM  125 (203)
T ss_dssp             EEEEEEEEEEC--------CS-GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTC
T ss_pred             eEEEEEEEECC--------Cc-hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence            34567788843        22 233444556789999999999987654322111  11111    26789999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+...  ...........+..++.+|+++|.|+.++.+.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  167 (203)
T 1zbd_A          126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD  167 (203)
T ss_dssp             TTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            75321  12222333445788999999999999888665544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.88  E-value=5.5e-06  Score=71.20  Aligned_cols=105  Identities=11%  Similarity=-0.031  Sum_probs=62.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l----~~~l~~k~~ilVlNK~DL  159 (383)
                      ....+.+||....         .+........+..+|+++.|+|+.++.+..+.  .+    .....+.|+++|+||+|+
T Consensus        54 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  124 (182)
T 3bwd_D           54 ATVNLGLWDTAGQ---------EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL  124 (182)
T ss_dssp             ----CEEECCCC----------CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred             EEEEEEEEECCCC---------hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence            3455668874322         11222233567889999999998765443221  11    112236899999999999


Q ss_pred             CCHHHH------------HHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMADR------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~~------------~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+....            ....+.....+. .++.+|+++|.|+.++.+.+.+
T Consensus       125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  177 (182)
T 3bwd_D          125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR  177 (182)
T ss_dssp             HTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            654321            112223334464 7889999999999888665543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.87  E-value=1.8e-06  Score=88.38  Aligned_cols=57  Identities=23%  Similarity=0.390  Sum_probs=38.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcc---------------cc------CCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMC---------------PA------APRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v------~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      .+|+|+|.+|||||||+|+|+.....               .+      ...+|+|.......+   +..+.|+||||..
T Consensus        14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~   93 (528)
T 3tr5_A           14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA   93 (528)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred             CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence            47999999999999999999622111               01      112566655433222   4578999999986


Q ss_pred             c
Q 016762          274 P  274 (383)
Q Consensus       274 ~  274 (383)
                      .
T Consensus        94 d   94 (528)
T 3tr5_A           94 D   94 (528)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.87  E-value=2e-05  Score=67.04  Aligned_cols=106  Identities=14%  Similarity=-0.080  Sum_probs=62.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHH-HHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEEcc
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLNRE  157 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l-~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l-----~~k~~ilVlNK~  157 (383)
                      ....+.+||.        ||+...-...+ ...+..+|.++.|+|..++.+.... . +..+.     .+.|+++|+||+
T Consensus        50 ~~~~~~~~D~--------~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~  121 (175)
T 2nzj_A           50 EDTTLVVVDT--------WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA  121 (175)
T ss_dssp             EEEEEEEECC--------C-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECT
T ss_pred             EEEEEEEEec--------CCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEECh
Confidence            3456778885        33322111222 2457889999999998765432221 1 11111     268999999999


Q ss_pred             CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      |+.+...  ......+....+..++++|+++|.|+.++.+.+.+
T Consensus       122 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  165 (175)
T 2nzj_A          122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR  165 (175)
T ss_dssp             TCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             hhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence            9975321  11112223345778999999999999988666544

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.87  E-value=1.2e-05  Score=70.01  Aligned_cols=103  Identities=16%  Similarity=0.129  Sum_probs=67.7

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh--cCCCeEEEEEccCCCCHH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL--GNRKRILVLNREDMISMA  163 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l--~~k~~ilVlNK~DL~~~~  163 (383)
                      ..+.+||..        || ..........+..+|++++|+|+..+.+.....  +..+.  ...|+++|+||+|+....
T Consensus        93 ~~~~i~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~  163 (208)
T 3clv_A           93 IKFDIWDTA--------GQ-ERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ  163 (208)
T ss_dssp             EEEEEEECT--------TG-GGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC
T ss_pred             eEEEEEECC--------Cc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc
Confidence            567888853        32 223334556789999999999998764332211  22222  258999999999942211


Q ss_pred             -HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          164 -DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       164 -~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                       ......+++...+..++++|++.|.|+.++.+.+.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  200 (208)
T 3clv_A          164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAE  200 (208)
T ss_dssp             SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence             123344555667788999999999999988766544

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.86  E-value=1.7e-05  Score=70.84  Aligned_cols=106  Identities=12%  Similarity=0.056  Sum_probs=60.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~----l~~~l~~k~~ilVlNK~DL  159 (383)
                      ....+.+||.        ||+ ..........+..+|++++|+|+.++.+..+.  .    +.....+.|+++|+||+|+
T Consensus        80 ~~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  150 (214)
T 2j1l_A           80 KPVHLHIWDT--------AGQ-DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL  150 (214)
T ss_dssp             EEEEEEEEEC------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred             EEEEEEEEEC--------CCc-hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence            3456778884        333 33344444678999999999998765433221  1    1111236899999999999


Q ss_pred             CCHHHHH--------------HHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMADRN--------------AWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~~~--------------~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+.....              ...+.....+. .++.+|+++|.|+.++.+.+.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~  206 (214)
T 2j1l_A          151 RKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV  206 (214)
T ss_dssp             GSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            8653221              11223344565 78999999999999887665443

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.86  E-value=1.2e-05  Score=68.12  Aligned_cols=104  Identities=9%  Similarity=-0.002  Sum_probs=65.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-HH-HHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LM-DQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~l-~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..        |+ .+........+..+|++++|+|+.++.+..+. .+ ..+.    ...|+++|.||+|+.
T Consensus        54 ~~~~~~~Dt~--------G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~  124 (170)
T 1z0j_A           54 LHKFLIWDTA--------GL-ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT  124 (170)
T ss_dssp             EEEEEEEEEC--------CS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred             EEEEEEEcCC--------Cc-hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence            3567788843        22 22334445678999999999999765433221 11 1111    256788999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +..+  ......+....+..++++|+++|.|+.++.+.+.+
T Consensus       125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  165 (170)
T 1z0j_A          125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISR  165 (170)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            5322  11222233455788999999999999988666543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.86  E-value=1.1e-05  Score=79.84  Aligned_cols=41  Identities=29%  Similarity=0.346  Sum_probs=28.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc--cccCCCCCceeEEE
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLK  256 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pgtT~~~~  256 (383)
                      ..++|+++|.+|+|||||+|+|++...  ......+|+|.+..
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~   49 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLG   49 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEec
Confidence            357899999999999999999996532  22334578887653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.86  E-value=2.6e-05  Score=66.67  Aligned_cols=103  Identities=17%  Similarity=0.090  Sum_probs=64.6

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh---cCCC-eEEEEEccC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL---GNRK-RILVLNRED  158 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l---~~k~-~ilVlNK~D  158 (383)
                      ..+.+||..-..         .........+..+|++++|+|+.++.+..+..     +....   ...| +++|+||+|
T Consensus        56 ~~~~~~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D  126 (178)
T 2hxs_A           56 VTLQIWDIGGQT---------IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID  126 (178)
T ss_dssp             EEEEEEECTTCC---------TTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred             EEEEEEECCCCc---------cccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence            567788854322         11223345688999999999998754432211     11111   1456 789999999


Q ss_pred             CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+...  ......+....+..++++|+++|.|+.++.+.+.+
T Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  169 (178)
T 2hxs_A          127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAA  169 (178)
T ss_dssp             GGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             cccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence            965321  12222333455788999999999999888666544

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.86  E-value=9.5e-06  Score=69.41  Aligned_cols=105  Identities=13%  Similarity=0.012  Sum_probs=66.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---h--cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L--GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~---l--~~k~~ilVlNK~DL  159 (383)
                      ...+.+||.....         .........+..+|.++.|+|+.++.+....  .+..+   .  .+.|+++|+||+|+
T Consensus        56 ~~~~~~~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  126 (181)
T 2fn4_A           56 PARLDILDTAGQE---------EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL  126 (181)
T ss_dssp             EEEEEEEECCCTT---------TTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred             EEEEEEEECCCch---------hhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            3567788854321         1222234567889999999998765432221  12222   1  26799999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+...  ......+....+..++++|+++|.|+.++.+.+.+.
T Consensus       127 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  169 (181)
T 2fn4_A          127 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA  169 (181)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            75322  122222334557789999999999999887665543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.86  E-value=5.9e-05  Score=64.53  Aligned_cols=97  Identities=12%  Similarity=-0.028  Sum_probs=63.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh----cCCCeEEEEEc
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLNR  156 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l----~~k~~ilVlNK  156 (383)
                      ....+.+||..-.        .+      ...+..+|+++.|+|..++.+..+..     +....    .+.|+++|.||
T Consensus        52 ~~~~l~i~Dt~G~--------~~------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK  117 (178)
T 2iwr_A           52 QTHLVLIREEAGA--------PD------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ  117 (178)
T ss_dssp             EEEEEEEEECSSS--------CC------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred             EEEEEEEEECCCC--------ch------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            4456788885432        11      24578899999999998765433221     22222    25789999999


Q ss_pred             cCCC-------CHHHHHHHHHHHHHc-CCeEEEeeCcCCCchhhhhHHHHH
Q 016762          157 EDMI-------SMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       157 ~DL~-------~~~~~~~w~~~l~~~-g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +|+.       ..++...|   .... +..++.+|+++|.|+.++.+.+.+
T Consensus       118 ~Dl~~~~~~~v~~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~  165 (178)
T 2iwr_A          118 DRISASSPRVVGDARARAL---XADMKRCSYYETXATYGLNVDRVFQEVAQ  165 (178)
T ss_dssp             TTCBTTBCCCSCHHHHHHH---HHHHSSEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             ccccccccCcCCHHHHHHH---HHhhcCCeEEEEeccccCCHHHHHHHHHH
Confidence            9993       23333333   2333 567889999999999988665543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.86  E-value=4.8e-05  Score=63.63  Aligned_cols=105  Identities=10%  Similarity=-0.053  Sum_probs=66.1

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~--~k~~ilVlNK~D  158 (383)
                      ...++.+||..-..         .........+..+|.++.|+|+.++.+..+.     ++.....  +.|.++|+||+|
T Consensus        49 ~~~~~~~~D~~G~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~D  119 (166)
T 2ce2_X           49 ETCLLDILDTAGQE---------EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD  119 (166)
T ss_dssp             EEEEEEEEECCCCS---------SCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred             EEEEEEEEECCCch---------hhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchh
Confidence            34567788854321         1122333567889999999998765332211     1112222  689999999999


Q ss_pred             CCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+... .....+...+.+..++.+|++.|.|+.++.+.+.+
T Consensus       120 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  161 (166)
T 2ce2_X          120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR  161 (166)
T ss_dssp             CSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred             hhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            986322 12222333455778999999999999888666543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.85  E-value=5.2e-06  Score=71.54  Aligned_cols=106  Identities=15%  Similarity=0.013  Sum_probs=66.1

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH----hcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~----l~~k~~ilVlNK~DL  159 (383)
                      ....+.+||....         ..........+..+|++++|+|+.++.+..+.  .+...    ..+.|+++|+||+|+
T Consensus        51 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  121 (186)
T 1mh1_A           51 KPVNLGLWDTAGQ---------EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL  121 (186)
T ss_dssp             EEEEEEEECCCCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHH
T ss_pred             EEEEEEEEECCCC---------HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccc
Confidence            3456778884322         12222223467899999999999765433222  12121    227899999999999


Q ss_pred             CCHHHH--------------HHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMADR--------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~~--------------~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+....              ..........+. .++++|+++|.|+.++.+.+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  177 (186)
T 1mh1_A          122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  177 (186)
T ss_dssp             HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHH
Confidence            754211              122223334565 88999999999999887665543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.85  E-value=4.9e-06  Score=71.72  Aligned_cols=105  Identities=12%  Similarity=0.077  Sum_probs=65.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||.        ||+ ..........+..+|++++|+|+.++.+...  ..+..++     .+.|+++|+||+|+
T Consensus        61 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  131 (183)
T 1moz_A           61 NLKLNVWDL--------GGQ-TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ  131 (183)
T ss_dssp             TEEEEEEEE--------C-----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred             CEEEEEEEC--------CCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence            456778874        332 2222233456789999999999987644322  1233333     35789999999999


Q ss_pred             CCHHHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+......+.+.+..     .+..++.+|+++|.|+.++.+.+.+.
T Consensus       132 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  177 (183)
T 1moz_A          132 PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV  177 (183)
T ss_dssp             TTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence            764333333333321     12368899999999999887666543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.85  E-value=9.3e-06  Score=68.72  Aligned_cols=105  Identities=15%  Similarity=0.078  Sum_probs=66.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..        |+ ..........+..+|++++|+|+..+.+....  .+..+.    .+.|+++|+||+|+.
T Consensus        51 ~~~~~l~D~~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  121 (170)
T 1g16_A           51 KVKLQIWDTA--------GQ-ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME  121 (170)
T ss_dssp             EEEEEEECCT--------TG-GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EEEEEEEeCC--------CC-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence            3567788843        22 22223344668899999999999765432221  111111    267899999999995


Q ss_pred             CHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          161 SMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       161 ~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .... .....+...+.+..++++|+++|.|+.++.+.+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  162 (170)
T 1g16_A          122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  162 (170)
T ss_dssp             TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3221 122223344557789999999999999887665543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.84  E-value=6.8e-06  Score=81.22  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=22.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..++|+++|.+|+|||||+|+|++.
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCc
Confidence            4578999999999999999999974

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.84  E-value=1.1e-05  Score=68.45  Aligned_cols=105  Identities=15%  Similarity=0.024  Sum_probs=64.2

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l-~~k~~ilVlNK~DL  159 (383)
                      ....+.+||..-   +      ..........+..+|.+++|+|+.++.+.....     +.... .+.|+++|+||+|+
T Consensus        53 ~~~~l~i~Dt~G---~------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  123 (170)
T 1z08_A           53 KRVNLAIWDTAG---Q------ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL  123 (170)
T ss_dssp             CEEEEEEEECCC---C-------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGG
T ss_pred             EEEEEEEEECCC---c------HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence            345678888432   2      222333335678999999999987654322211     11111 36789999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+...  .....++....+..++.+|+++|.|+.++.+.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  165 (170)
T 1z08_A          124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK  165 (170)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            75321  12222334456788999999999999988665543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.83  E-value=1.1e-05  Score=71.22  Aligned_cols=105  Identities=13%  Similarity=0.096  Sum_probs=66.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH----HHhcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~----~~l~~k~~ilVlNK~DL  159 (383)
                      ....+.+||..-.         ..........+..+|++++|+|+.++.+..+.  .+.    ....+.|+++|+||+|+
T Consensus        71 ~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  141 (201)
T 2gco_A           71 KQVELALWDTAGQ---------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL  141 (201)
T ss_dssp             EEEEEEEECCCCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred             EEEEEEEEECCCc---------hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHh
Confidence            3456788885332         12222223467899999999998765432221  121    22237899999999999


Q ss_pred             CCHHHHH--------------HHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMADRN--------------AWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~~~--------------~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+.....              ...++....+. .++.+|+++|.|+.++.+.+.+
T Consensus       142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~  196 (201)
T 2gco_A          142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR  196 (201)
T ss_dssp             TTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence            8653211              12223334455 7889999999999988766544

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.83  E-value=2.6e-06  Score=76.33  Aligned_cols=104  Identities=10%  Similarity=-0.024  Sum_probs=67.1

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMIS  161 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~~k~~ilVlNK~DL~~  161 (383)
                      ...+.+||....         ..........+..+|++++|+|+..+.+..+.     .+.....+.|+++|+||+|+.+
T Consensus        63 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  133 (221)
T 3gj0_A           63 PIKFNVWDTAGQ---------EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  133 (221)
T ss_dssp             EEEEEEEEECSG---------GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred             EEEEEEEeCCCh---------HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence            456778885332         22222233567899999999999875443221     1222223789999999999976


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       162 ~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .........+....+..++.+|+++|.|+.++.+.+.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  171 (221)
T 3gj0_A          134 RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  171 (221)
T ss_dssp             CSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHH
T ss_pred             ccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            43322222334456788999999999999888665543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.83  E-value=4.2e-05  Score=67.20  Aligned_cols=103  Identities=15%  Similarity=0.058  Sum_probs=64.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l-~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..-.         ..........+..+|++++|+|+..+.+..+..  +..+   . .+.|+++|+||+|+.
T Consensus        76 ~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  146 (199)
T 2p5s_A           76 RTVLQLWDTAGQ---------ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR  146 (199)
T ss_dssp             EEEEEEEECTTC---------TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred             EEEEEEEECCCC---------cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            456788885332         223344556788999999999987654432211  1111   1 268999999999996


Q ss_pred             CHH-------H-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          161 SMA-------D-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       161 ~~~-------~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ...       . ...-..+....+..++++|++.|.|+.++.+.+.
T Consensus       147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~  192 (199)
T 2p5s_A          147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLA  192 (199)
T ss_dssp             HHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            321       0 1111122334577889999999999988765543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.83  E-value=2.3e-05  Score=66.97  Aligned_cols=105  Identities=15%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HH---HHhcCCCeEEEEEccCCCCH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD---QWLGNRKRILVLNREDMISM  162 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~---~~l~~k~~ilVlNK~DL~~~  162 (383)
                      ..+.+||....         ..........+..+|++++|+|+.++.+.....  +.   ....+.|+++|+||+|+.+.
T Consensus        58 ~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  128 (181)
T 3tw8_B           58 VKLQIWDTAGQ---------ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER  128 (181)
T ss_dssp             EEEEEEEETTG---------GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred             EEEEEEcCCCc---------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence            56778875332         122222334678999999999998753332211  11   11225789999999998754


Q ss_pred             HH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          163 AD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       163 ~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      ..  ...........+..++++|+++|.|+.++.+.+.+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  169 (181)
T 3tw8_B          129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV  169 (181)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            31  1222233445578899999999999999877665543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.83  E-value=6.4e-06  Score=72.04  Aligned_cols=105  Identities=13%  Similarity=0.076  Sum_probs=66.2

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~----l~~~l~~k~~ilVlNK~DL  159 (383)
                      ....+.+||....         ..........+..+|+++.|+|+.++.+..+.  .    +.....+.|+++|+||+|+
T Consensus        69 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  139 (194)
T 3reg_A           69 EEFILHLWDTAGQ---------EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL  139 (194)
T ss_dssp             EEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGG
T ss_pred             EEEEEEEEECCCc---------HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence            4455678885332         22223333567899999999999875443321  1    2222236899999999999


Q ss_pred             CCHH----HHHHHHHHHHHcCCe-EEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMA----DRNAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~----~~~~w~~~l~~~g~~-vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+..    ......+.....+.. ++.+|+++|.|+.++.+.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  184 (194)
T 3reg_A          140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD  184 (194)
T ss_dssp             CCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHH
Confidence            7421    112222334445665 899999999999988665544

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.81  E-value=1.4e-05  Score=69.62  Aligned_cols=105  Identities=11%  Similarity=-0.034  Sum_probs=66.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL  159 (383)
                      ....+.+||......         ........+..+|++++|+|+.++.+.... . +..+.    .+.|+++|+||+|+
T Consensus        69 ~~~~~~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  139 (189)
T 2gf9_A           69 KRIKLQIWDTAGQER---------YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL  139 (189)
T ss_dssp             EEEEEEEEECCSCCS---------SCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             eEEEEEEEeCCCcHH---------HhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence            345678888543221         112233567899999999998765432221 1 11111    26799999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .+...  .....+.....+..++++|+++|.|+.++.+.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  181 (189)
T 2gf9_A          140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD  181 (189)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            75321  12222334455788999999999999988766544

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.81  E-value=1.1e-05  Score=78.49  Aligned_cols=23  Identities=52%  Similarity=0.713  Sum_probs=21.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhh
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      ...+|+++|.||||||||+|.|.
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~  100 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALG  100 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999996

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.81  E-value=1.2e-05  Score=70.65  Aligned_cols=104  Identities=11%  Similarity=0.037  Sum_probs=59.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-------cCCCeEEEEEcc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-------GNRKRILVLNRE  157 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-------~~k~~ilVlNK~  157 (383)
                      ...+.+||.        ||+ ..........+..+|++++|+|+..+.+....  .+..+.       .+.|+++|+||+
T Consensus        72 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~  142 (208)
T 2yc2_C           72 SVELFLLDT--------AGS-DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKT  142 (208)
T ss_dssp             EEEEEEEET--------TTT-HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC
T ss_pred             EEEEEEEEC--------CCc-HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECc
Confidence            456788884        343 34444455678999999999999765432221  111221       367899999999


Q ss_pred             CCCC-HHH--HHHHHHHHHHcCCeEEEeeCcC-CCchhhhhHHHHH
Q 016762          158 DMIS-MAD--RNAWATYFAKQGTKVIFSNGQL-GMGTMKLSRLAKA  199 (383)
Q Consensus       158 DL~~-~~~--~~~w~~~l~~~g~~vi~iSa~~-g~Gi~~L~~~l~~  199 (383)
                      |+.+ ...  .....++....+..++.+|+++ |.|+.++.+.+.+
T Consensus       143 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~  188 (208)
T 2yc2_C          143 DLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT  188 (208)
T ss_dssp             -------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHH
T ss_pred             ccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHH
Confidence            9986 322  1233344556678899999999 9999988665544

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.80  E-value=2.5e-05  Score=68.13  Aligned_cols=106  Identities=11%  Similarity=-0.020  Sum_probs=67.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh---cCCCeEEEEEccC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL---GNRKRILVLNRED  158 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~---l~~~l---~~k~~ilVlNK~D  158 (383)
                      ...+.+||..        |+ ..........+..+|++++|+|+.++.+....  .   +....   .+.|+++|+||+|
T Consensus        55 ~~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~D  125 (199)
T 2gf0_A           55 VCTLQITDTT--------GS-HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD  125 (199)
T ss_dssp             EEEEEEEECC--------GG-GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTT
T ss_pred             EEEEEEEeCC--------Ch-HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            4467788843        32 22233344568899999999998765432221  1   22221   2579999999999


Q ss_pred             CCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          159 MISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       159 L~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      +.+... ...........+..++.+|+++|.|+.++.+.+.+..
T Consensus       126 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  169 (199)
T 2gf0_A          126 ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE  169 (199)
T ss_dssp             CSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence            975321 1222223345577899999999999999877665543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.80  E-value=2.8e-05  Score=67.69  Aligned_cols=105  Identities=8%  Similarity=-0.022  Sum_probs=66.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL  159 (383)
                      ....+.+||....         .+........+..+|++++|+|+..+.+....  .+..+.    .+.|+++|+||+|+
T Consensus        72 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl  142 (193)
T 2oil_A           72 AAVKAQIWDTAGL---------ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL  142 (193)
T ss_dssp             EEEEEEEEEESCC---------CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGG
T ss_pred             EEEEEEEEeCCCc---------hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCc
Confidence            3456778884322         11223334568899999999999765432221  122222    25789999999999


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      .....  ......+....+..++.+|+++|.|+.++.+.+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  184 (193)
T 2oil_A          143 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK  184 (193)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            75321  12222334456788999999999999988665543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.80  E-value=6.3e-06  Score=82.34  Aligned_cols=57  Identities=32%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCc-c-----------------------------ccCCCCCceeEEEEEEe---CCc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRM-C-----------------------------PAAPRPGVTRVLKWVRF---GKD  263 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-~-----------------------------~v~~~pgtT~~~~~~~~---~~~  263 (383)
                      .++|+++|.+|+|||||+|+|++... .                             ..+...|+|.+.....+   +..
T Consensus         6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~   85 (435)
T 1jny_A            6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   85 (435)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence            46899999999999999999985310 0                             01125788888654333   457


Q ss_pred             EEEEecCccc
Q 016762          264 LEFLDSPGII  273 (383)
Q Consensus       264 i~l~DTpG~i  273 (383)
                      +.++||||..
T Consensus        86 ~~iiDtpG~~   95 (435)
T 1jny_A           86 FTIIDAPGHR   95 (435)
T ss_dssp             EEECCCSSST
T ss_pred             EEEEECCCcH
Confidence            8999999975

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.80  E-value=2.4e-05  Score=66.07  Aligned_cols=106  Identities=15%  Similarity=0.009  Sum_probs=59.6

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEcc
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNRE  157 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~  157 (383)
                      .....+.+||..        |+ ..........+..+|.++.|+|..++.+....  .+..+.     .+.|+++|+||+
T Consensus        46 ~~~~~~~i~D~~--------g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  116 (166)
T 3q72_A           46 GEEASLMVYDIW--------EQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS  116 (166)
T ss_dssp             TEEEEEEEEECC------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred             CEEEEEEEEECC--------CC-ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence            344567788743        32 33344444678999999999999865432221  112221     257999999999


Q ss_pred             CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      |+.+...  ...-.......+..++++|+++|.|+.++.+.+.+
T Consensus       117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  160 (166)
T 3q72_A          117 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  160 (166)
T ss_dssp             TCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHH
T ss_pred             ccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Confidence            9975432  11112233445778899999999999988665544

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.80  E-value=4.9e-05  Score=67.36  Aligned_cols=68  Identities=18%  Similarity=0.157  Sum_probs=43.0

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHH-HHHHHhhhcCeEEEEEecCCCCCCCcH---HHHHHh-------cCCCeEEEEE
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWL-------GNRKRILVLN  155 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~-~l~~~idr~DlILeV~DaR~p~~~~~~---~l~~~l-------~~k~~ilVlN  155 (383)
                      +..+.+||.        ||| ..+.. .....+..+|++++|+|+.........   .+...+       .+.|+++|+|
T Consensus        53 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n  123 (214)
T 2fh5_B           53 GNSLTLIDL--------PGH-ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN  123 (214)
T ss_dssp             CCEEEEEEC--------CCC-HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred             ccEEEEEEC--------CCC-hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence            467888884        343 34444 344668999999999998752111111   122211       1578999999


Q ss_pred             ccCCCCHH
Q 016762          156 REDMISMA  163 (383)
Q Consensus       156 K~DL~~~~  163 (383)
                      |+||....
T Consensus       124 K~Dl~~~~  131 (214)
T 2fh5_B          124 KQDIAMAK  131 (214)
T ss_dssp             CTTSTTCC
T ss_pred             CCCCCCcc
Confidence            99997543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=97.80  E-value=1.8e-05  Score=76.55  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=66.3

Q ss_pred             CcEEEEcCCCCCcCCCchHHHH------HHHHHHHHhhhcCeEEEEEecCCCC---CCCcH-----HHHHH---hcCCCe
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL---STTHP-----LMDQW---LGNRKR  150 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~------~~~~l~~~idr~DlILeV~DaR~p~---~~~~~-----~l~~~---l~~k~~  150 (383)
                      ..+++||.        ||+...      +...+.+.++++|++|+|+|+....   ...+.     ++..+   +.++|+
T Consensus       206 ~~~~l~Dt--------PG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~  277 (342)
T 1lnz_A          206 RSFVMADL--------PGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ  277 (342)
T ss_dssp             CEEEEEEH--------HHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCB
T ss_pred             ceEEEecC--------CCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCE
Confidence            45677773        554432      3344556688999999999996522   11111     12222   136899


Q ss_pred             EEEEEccCCCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          151 ILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       151 ilVlNK~DL~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      ++|+||+|+....+ ...+.+.+. ....++++|++++.|+.+|.+.+.+..
T Consensus       278 ilV~NK~Dl~~~~e~~~~l~~~l~-~~~~v~~iSA~tg~gi~eL~~~l~~~l  328 (342)
T 1lnz_A          278 IIVANKMDMPEAAENLEAFKEKLT-DDYPVFPISAVTREGLRELLFEVANQL  328 (342)
T ss_dssp             CBEEECTTSTTHHHHHHHHHHHCC-SCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             EEEEECccCCCCHHHHHHHHHHhh-cCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence            99999999987543 233322221 115688899999999999877765543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.79  E-value=2.6e-05  Score=68.04  Aligned_cols=104  Identities=11%  Similarity=-0.006  Sum_probs=64.9

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~DL  159 (383)
                      ....+.+||.....         +........+..+|++++|+|+.++.+..+.      .+.....+.|+++|+||+|+
T Consensus        64 ~~~~~~i~D~~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  134 (194)
T 2atx_A           64 KQYLLGLYDTAGQE---------DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL  134 (194)
T ss_dssp             CEEEEEEECCCCSS---------SSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTS
T ss_pred             EEEEEEEEECCCCc---------chhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence            34667888854321         1112223457889999999999765432221      12222237899999999999


Q ss_pred             CCHHH--------------HHHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762          160 ISMAD--------------RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       160 ~~~~~--------------~~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      .+...              .....++....+. .++.+|+++|.|+.++.+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  188 (194)
T 2atx_A          135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI  188 (194)
T ss_dssp             TTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             cccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence            76321              1112222334465 788999999999998866554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.79  E-value=1.8e-05  Score=68.27  Aligned_cols=103  Identities=11%  Similarity=0.044  Sum_probs=67.1

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HH---HHh-cCCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD---QWL-GNRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~---~~l-~~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||..        |+ ..........+..+|++++|+|+..+.+.....  +.   ... .+.|+++|+||+|+.+
T Consensus        59 ~~~~l~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  129 (186)
T 2bme_A           59 VKLQIWDTA--------GQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA  129 (186)
T ss_dssp             EEEEEEEEC--------CS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEEEEeCC--------Cc-HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            567788843        22 233444556789999999999998654332211  11   111 2678999999999964


Q ss_pred             HHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       162 ~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ...  ...........+..++.+|+++|.|+.++.+.+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  169 (186)
T 2bme_A          130 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR  169 (186)
T ss_dssp             GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            321  12233444556788999999999999888665543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.79  E-value=4.6e-05  Score=65.03  Aligned_cols=85  Identities=14%  Similarity=0.034  Sum_probs=55.5

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHHcC---------CeEEEeeC
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQG---------TKVIFSNG  184 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g---------~~vi~iSa  184 (383)
                      ..+..+|++++|+|+..+......+....+  .+.|+++|+||+|+.+... ......+...+         ..++++|+
T Consensus        74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (178)
T 2lkc_A           74 RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSA  152 (178)
T ss_dssp             SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred             HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEec
Confidence            446889999999998875443332222222  3789999999999986321 11222222211         36888999


Q ss_pred             cCCCchhhhhHHHHHhh
Q 016762          185 QLGMGTMKLSRLAKALA  201 (383)
Q Consensus       185 ~~g~Gi~~L~~~l~~l~  201 (383)
                      ++|.|+.++.+.+.+..
T Consensus       153 ~~~~gv~~l~~~l~~~~  169 (178)
T 2lkc_A          153 KTKEGLDHLLEMILLVS  169 (178)
T ss_dssp             SSSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            99999998876665443

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.79  E-value=1.8e-05  Score=76.09  Aligned_cols=105  Identities=10%  Similarity=0.084  Sum_probs=67.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D  158 (383)
                      .+..+.+||.        ||+ ..+.......+..+|++|+|+|+.++.+...  ..+..++.     +.|+++|+||+|
T Consensus       207 ~~~~l~i~Dt--------~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~D  277 (329)
T 3o47_A          207 KNISFTVWDV--------GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD  277 (329)
T ss_dssp             TTEEEEEEEC--------C------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred             CcEEEEEEEC--------CCC-HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECcc
Confidence            4566778875        332 3444445567899999999999976554332  22333332     678999999999


Q ss_pred             CCCHHHHHHHHHHHHH-----cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~~~~w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+......+...+..     .+..++.+|+++|.|+.++.+.+.+
T Consensus       278 l~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~  323 (329)
T 3o47_A          278 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN  323 (329)
T ss_dssp             STTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHH
Confidence            9865444444443322     1235788999999999988666544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.78  E-value=1.7e-05  Score=70.35  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=66.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH---HHh-cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~---~~l-~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..-   +      ..........+..+|++++|+|+.++.+....  .+.   ... .+.|+++|+||+|+.
T Consensus        74 ~~~l~l~Dt~G---~------~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  144 (201)
T 2ew1_A           74 KVKLQIWDTAG---Q------ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA  144 (201)
T ss_dssp             EEEEEEEEECC---S------GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEECCC---c------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            45678888432   2      23344445678999999999998765432221  111   111 257899999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +...  ......+....+..++.+|+++|.|+.++.+.+.+
T Consensus       145 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  185 (201)
T 2ew1_A          145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  185 (201)
T ss_dssp             GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            4321  11222233455778899999999999988665543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.77  E-value=1.9e-05  Score=68.57  Aligned_cols=105  Identities=13%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~-----~k~~ilVlNK~DL  159 (383)
                      +..+.+||..-...         ........++.+|++++|+|+.++.+...  ..+..++.     +.|+++|+||+|+
T Consensus        65 ~~~~~~~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  135 (189)
T 2x77_A           65 NISFEVWDLGGQTG---------VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL  135 (189)
T ss_dssp             TEEEEEEEECCSSS---------SCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred             CEEEEEEECCCCHh---------HHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence            56778888543211         11112235689999999999987654332  22333332     5789999999999


Q ss_pred             CCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+........+.+.     ..+..++++|+++|.|+.++.+.+.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  181 (189)
T 2x77_A          136 PDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER  181 (189)
T ss_dssp             TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHH
Confidence            86533233323221     123468889999999999887665543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.77  E-value=8.2e-05  Score=65.40  Aligned_cols=106  Identities=16%  Similarity=0.002  Sum_probs=66.0

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHH-HHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEE
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLN  155 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l-~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlN  155 (383)
                      ......+.+||..-....         ...+ ...+..+|++++|+|..++.+..+.  .+..+.     .+.|+++|.|
T Consensus        68 ~~~~~~l~i~Dt~g~~~~---------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  138 (195)
T 3cbq_A           68 DKEEVTLVVYDIWEQGDA---------GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN  138 (195)
T ss_dssp             TTEEEEEEEECCCCCSGG---------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred             CCEEEEEEEEecCCCccc---------hhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence            334566788885433211         1112 2457889999999998765432221  122222     2689999999


Q ss_pred             ccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          156 REDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       156 K~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      |+|+.+...  ...........+..++.+|++.|.|+.++.+.+.
T Consensus       139 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~  183 (195)
T 3cbq_A          139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV  183 (195)
T ss_dssp             CTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             chhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHH
Confidence            999975321  1222233344567889999999999988865543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.76  E-value=1.6e-05  Score=71.20  Aligned_cols=105  Identities=13%  Similarity=0.087  Sum_probs=66.3

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HH----HHHHhcCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL----MDQWLGNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~----l~~~l~~k~~ilVlNK~  157 (383)
                      ......+.+||..-.         ..........+..+|++++|+|+.++.+..+  ..    +.....+.|+++|.||+
T Consensus        71 ~~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~  141 (214)
T 3q3j_B           71 EEQRVELSLWDTSGS---------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT  141 (214)
T ss_dssp             --CEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECG
T ss_pred             CCEEEEEEEEECCCC---------HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence            334566788885332         2222233356789999999999987644332  11    11222368999999999


Q ss_pred             CCCC-----------------HHHHHHHHHHHHHcCC-eEEEeeCcCCCc-hhhhhHHHHHh
Q 016762          158 DMIS-----------------MADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKAL  200 (383)
Q Consensus       158 DL~~-----------------~~~~~~w~~~l~~~g~-~vi~iSa~~g~G-i~~L~~~l~~l  200 (383)
                      |+.+                 .++...|   ....+. .++.+|+++|.| +.++.+.+.+.
T Consensus       142 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~  200 (214)
T 3q3j_B          142 DLRTDLSTLMELSHQKQAPISYEQGCAI---AKQLGAEIYLEGSAFTSEKSIHSIFRTASML  200 (214)
T ss_dssp             GGGGCHHHHHHHHHTTCCCCCHHHHHHH---HHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred             hhccchhhhhhhcccccCccCHHHHHHH---HHHcCCCEEEEeccCCCcccHHHHHHHHHHH
Confidence            9954                 2222333   344566 789999999998 98886655443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.76  E-value=3e-05  Score=66.29  Aligned_cols=104  Identities=9%  Similarity=-0.009  Sum_probs=61.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNR  156 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-----~~k~~ilVlNK  156 (383)
                      ...+.+||.        ||+ ..........+..+|++++|+|+.++.+..+.     ++....     .+.|+++|+||
T Consensus        57 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK  127 (182)
T 1ky3_A           57 VATMQVWDT--------AGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK  127 (182)
T ss_dssp             CEEEEEECC--------C-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred             EEEEEEEEC--------CCC-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence            456778874        333 33344444668999999999999765432221     111111     35799999999


Q ss_pred             cCCCCHHH---HHHHHHHHH-HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          157 EDMISMAD---RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       157 ~DL~~~~~---~~~w~~~l~-~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +|+.....   .....++.. ..+..++++|+++|.|+.++.+.+.+
T Consensus       128 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  174 (182)
T 1ky3_A          128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR  174 (182)
T ss_dssp             TTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             CccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHH
Confidence            99964321   111112222 23567899999999999988666544

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.76  E-value=8.5e-06  Score=86.14  Aligned_cols=58  Identities=21%  Similarity=0.315  Sum_probs=35.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-----------ccCC------CCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----------~v~~------~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      ..+|+|+|.+|+|||||+|+|++....           .+.+      .+|+|.......+   +..+.|+||||...
T Consensus        10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A           10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            457999999999999999999842111           1111      3566665432222   45689999999964

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.76  E-value=5.8e-05  Score=65.54  Aligned_cols=99  Identities=15%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHH-HHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTE-KELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNRED  158 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~-~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~D  158 (383)
                      ...+.+||.        ||+ .... ......+..+|++++|+|+.++.+....     ++....  .+.|+++|+||+|
T Consensus        68 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  138 (189)
T 1z06_A           68 RIKIQLWDT--------AGQ-ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD  138 (189)
T ss_dssp             EEEEEEEEC--------CCS-HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTT
T ss_pred             EEEEEEEEC--------CCc-hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            456888884        232 3334 4445678999999999999865432221     122222  3689999999999


Q ss_pred             CCCHHH--HHHHHHHHHHcCCeEEEeeCcCC---Cchhhhh
Q 016762          159 MISMAD--RNAWATYFAKQGTKVIFSNGQLG---MGTMKLS  194 (383)
Q Consensus       159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g---~Gi~~L~  194 (383)
                      +.+..+  ......+....+..++.+|++.|   .|+.++.
T Consensus       139 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~  179 (189)
T 1z06_A          139 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  179 (189)
T ss_dssp             CGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             ccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHH
Confidence            965321  11122233445778999999999   5555543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.75  E-value=1.1e-05  Score=71.49  Aligned_cols=105  Identities=15%  Similarity=0.022  Sum_probs=65.1

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNRED  158 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~D  158 (383)
                      .....+.+||....         ..........+..+|++++|+|+.++.+..+.  .+...+    .+.|+++|+||+|
T Consensus        75 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  145 (204)
T 4gzl_A           75 GKPVNLGLWDTAGL---------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD  145 (204)
T ss_dssp             -CEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHH
T ss_pred             CEEEEEEEEECCCc---------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechh
Confidence            34455668884322         22223333567899999999999875443332  122222    2789999999999


Q ss_pred             CCCHHHH--------------HHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHHH
Q 016762          159 MISMADR--------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       159 L~~~~~~--------------~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +.+....              .....+....+. .++++|+++|.|+.++.+.+.
T Consensus       146 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~  200 (204)
T 4gzl_A          146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI  200 (204)
T ss_dssp             HHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             hccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence            9764321              112222334453 588999999999988866554

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.75  E-value=1.8e-05  Score=69.81  Aligned_cols=103  Identities=12%  Similarity=0.078  Sum_probs=63.0

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +.++.+||..        |+ ..........+..+|.+++|+|+.++.+..+  ..+..++     .+.|+++|+||+|+
T Consensus        68 ~~~l~i~Dt~--------G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  138 (198)
T 1f6b_A           68 GMTFTTFDLG--------GH-IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR  138 (198)
T ss_dssp             TEEEEEEEEC--------C-----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTS
T ss_pred             CEEEEEEECC--------Cc-HhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCc
Confidence            3667788842        32 2222233356789999999999987643322  2233332     36899999999999


Q ss_pred             CC---HHHHHHHHHHHH--------------HcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          160 IS---MADRNAWATYFA--------------KQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       160 ~~---~~~~~~w~~~l~--------------~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ..   .++...+.....              ..+..++.+|+++|.|+.++.+.+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~  194 (198)
T 1f6b_A          139 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA  194 (198)
T ss_dssp             TTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             cccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence            74   333333322110              0224678899999999988866543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.75  E-value=6.3e-05  Score=73.02  Aligned_cols=104  Identities=13%  Similarity=0.036  Sum_probs=67.7

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA  163 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~  163 (383)
                      ...+.+++++|..-  +.          +....++..+|++++|+|+.......  .+...+.++|.++|+||+|+.+..
T Consensus       168 ~~~~~~~iiiDTpG--i~----------~~~~~~~~~aD~vl~V~d~~~~~~~~--~l~~~~~~~p~ivVlNK~Dl~~~~  233 (355)
T 3p32_A          168 EAAGFDVILIETVG--VG----------QSEVAVANMVDTFVLLTLARTGDQLQ--GIKKGVLELADIVVVNKADGEHHK  233 (355)
T ss_dssp             HHTTCCEEEEEECS--CS----------SHHHHHHTTCSEEEEEEESSTTCTTT--TCCTTSGGGCSEEEEECCCGGGHH
T ss_pred             hhCCCCEEEEeCCC--CC----------cHHHHHHHhCCEEEEEECCCCCccHH--HHHHhHhhcCCEEEEECCCCcChh
Confidence            34578999999643  11          11123469999999999976432221  111122356999999999998765


Q ss_pred             HHHHHHHHHHHc-----------CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          164 DRNAWATYFAKQ-----------GTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       164 ~~~~w~~~l~~~-----------g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      ........+.+.           +..++++|+++|.|+.+|.+.+.+..
T Consensus       234 ~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~  282 (355)
T 3p32_A          234 EARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR  282 (355)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            443333333321           35789999999999999877766543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.73  E-value=1.5e-05  Score=69.61  Aligned_cols=103  Identities=13%  Similarity=0.093  Sum_probs=65.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..-.         ..........+..+|++++|+|+..+.+..+..  +..+.    .+.|+++|+||+|+.
T Consensus        69 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~  139 (191)
T 2a5j_A           69 QIKLQIWDTAGQ---------ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE  139 (191)
T ss_dssp             EEEEEEECCTTG---------GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEEEEEECCCc---------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence            456788885322         222223346788999999999997654322211  11221    267899999999996


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +...  ......+..+.+..++.+|+++|.|+.++.+.+.
T Consensus       140 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  179 (191)
T 2a5j_A          140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  179 (191)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            4321  1222233445678899999999999998866554

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.72  E-value=1.9e-05  Score=69.21  Aligned_cols=104  Identities=12%  Similarity=-0.024  Sum_probs=65.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l--~~k~~ilVlNK~D  158 (383)
                      ....+.+||..-   +     ..  .......+..+|++++|+|+.++.+..+.     .+....  .+.|+++|+||+|
T Consensus        74 ~~~~~~l~Dt~G---~-----~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D  143 (196)
T 2atv_A           74 EVVSMEILDTAG---Q-----ED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD  143 (196)
T ss_dssp             EEEEEEEEECCC---C-----CC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGG
T ss_pred             EEEEEEEEECCC---C-----Cc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcc
Confidence            345677888432   2     22  23334678899999999999865433221     122222  3678999999999


Q ss_pred             CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCC-chhhhhHHHHH
Q 016762          159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGM-GTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~-Gi~~L~~~l~~  199 (383)
                      +.+...  ......+....+..++.+|++.|. |+.++.+.+.+
T Consensus       144 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~  187 (196)
T 2atv_A          144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCR  187 (196)
T ss_dssp             GGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHH
T ss_pred             cccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHH
Confidence            965321  112222333457789999999999 99888665543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.72  E-value=2e-05  Score=69.52  Aligned_cols=104  Identities=11%  Similarity=0.037  Sum_probs=68.5

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||.        ||+ ..........++.+|++++|+|+.++.+....  .+..+.    .+.|+++|+||+|+.
T Consensus        73 ~~~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  143 (200)
T 2o52_A           73 TVKLQIWDT--------AGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD  143 (200)
T ss_dssp             EEEEEEECC--------TTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred             eeEEEEEcC--------CCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence            356778884        444 33444445678999999999999865433221  111111    267899999999996


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +...  ......+....+..++.+|+++|.|+.++.+.+.+
T Consensus       144 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  184 (200)
T 2o52_A          144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR  184 (200)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            4321  12333444556788999999999999988665543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.72  E-value=4.8e-05  Score=64.85  Aligned_cols=104  Identities=7%  Similarity=-0.064  Sum_probs=65.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNR  156 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-----~~k~~ilVlNK  156 (383)
                      ...+.+||..-   +      ..........+..+|+++.|+|+.++.+....     ++....     .+.|+++|+||
T Consensus        55 ~~~~~i~Dt~G---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK  125 (177)
T 1wms_A           55 FVTMQIWDTAG---Q------ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK  125 (177)
T ss_dssp             EEEEEEEECCC---C------GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEEC
T ss_pred             EEEEEEEeCCC---c------hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEEC
Confidence            35678888432   2      22333444678999999999999865432221     122222     35699999999


Q ss_pred             cCCCCHHH-HHHHHHHHH-HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          157 EDMISMAD-RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       157 ~DL~~~~~-~~~w~~~l~-~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +|+..... .....++.. ..+..++.+|+++|.|+.++.+.+.+
T Consensus       126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  170 (177)
T 1wms_A          126 IDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR  170 (177)
T ss_dssp             TTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence            99974221 122222233 33567899999999999888665443

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=97.71  E-value=3.3e-05  Score=69.75  Aligned_cols=106  Identities=14%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEc
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNR  156 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l-~~k~~ilVlNK  156 (383)
                      .....+.+.+||...+         +++......++..+|.++.|+|..++.+..+..  +..+   . .+.|+++|.||
T Consensus        57 ~~~~~v~l~iwDtaGq---------e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK  127 (216)
T 4dkx_A           57 LEDRTIRLQLWDTAGL---------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK  127 (216)
T ss_dssp             CSSCEEEEEEECCSCT---------TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEEC
T ss_pred             ecceEEEEEEEECCCc---------hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeec
Confidence            3444567789986543         223334456789999999999987765544321  1111   1 25789999999


Q ss_pred             cCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       157 ~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +||.....  ..+..++..+.+..++.+||++|.|+.++-+.+
T Consensus       128 ~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A          128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             TTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             cchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence            99965321  112222334557888899999999999875544

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=96.89  E-value=4.8e-06  Score=73.54  Aligned_cols=103  Identities=17%  Similarity=0.074  Sum_probs=64.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc----CCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l~----~k~~ilVlNK~DL  159 (383)
                      ....+.+||.        ||+ ..........+..+|++++|+|+.++.+..+.  .+...+.    +.|+++|+||+|+
T Consensus        76 ~~~~l~i~Dt--------~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl  146 (204)
T 3th5_A           76 KPVNLGLWDT--------AGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL  146 (204)
Confidence            3445556763        343 34444445678899999999999876554432  2222222    6789999999999


Q ss_pred             CCHHHH--------------HHHHHHHHHcCC-eEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADR--------------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~--------------~~w~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .+....              ....++....+. .++++|+++|.|+.++.+.+
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l  199 (204)
T 3th5_A          147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA  199 (204)
Confidence            764311              111122223344 67889999999998876554

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.71  E-value=0.00025  Score=68.67  Aligned_cols=84  Identities=12%  Similarity=0.097  Sum_probs=60.3

Q ss_pred             hhhcCeEEEEEecCCCCCCC-cH--H-HHHHh---cCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCch
Q 016762          118 LKLMDVVIEVRDARIPLSTT-HP--L-MDQWL---GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~-~~--~-l~~~l---~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi  190 (383)
                      ...+|.+|+|+|+..+.+.. ..  . +..+.   .++|+++|+||+|+..........+.+...+..++++|+++|.|+
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi  323 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGI  323 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCH
Confidence            45699999999987654211 11  1 22222   278999999999999877665555555566778999999999999


Q ss_pred             hhhhHHHHHhh
Q 016762          191 MKLSRLAKALA  201 (383)
Q Consensus       191 ~~L~~~l~~l~  201 (383)
                      .+|.+.+.+..
T Consensus       324 ~~l~~~i~~~l  334 (357)
T 2e87_A          324 DLVKEEIIKTL  334 (357)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99877665543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.70  E-value=1e-05  Score=83.94  Aligned_cols=56  Identities=23%  Similarity=0.440  Sum_probs=37.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCC-CceeEE--EEEEe-----------C--------CcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL--KWVRF-----------G--------KDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-gtT~~~--~~~~~-----------~--------~~i~l~DTpG~i  273 (383)
                      ++++|+++|.+|+|||||+|+|++...  ....+ |+|.+.  .....           +        ..+.++||||..
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            456899999999999999999997532  23333 555542  22211           0        148999999974

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.70  E-value=1.7e-05  Score=69.42  Aligned_cols=103  Identities=10%  Similarity=0.094  Sum_probs=63.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~DL  159 (383)
                      +..+.+||..-.         ..........+..+|++++|+|+.++.+..+.  .+..++     .+.|+++|.||+|+
T Consensus        66 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  136 (190)
T 1m2o_B           66 NIKFTTFDLGGH---------IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA  136 (190)
T ss_dssp             TEEEEEEECCCS---------GGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred             CEEEEEEECCCC---------HHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCC
Confidence            366778885332         11122223457899999999999876433221  233332     36899999999999


Q ss_pred             CCHHHHHHHHHHHHH------------cCCeEEEeeCcCCCchhhhhHHHH
Q 016762          160 ISMADRNAWATYFAK------------QGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       160 ~~~~~~~~w~~~l~~------------~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ......+...+.+..            .+..++.+|+++|.|+.++.+.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  187 (190)
T 1m2o_B          137 PNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS  187 (190)
T ss_dssp             TTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             cCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence            752222233333221            234678899999999988866543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=97.69  E-value=6e-05  Score=67.01  Aligned_cols=105  Identities=7%  Similarity=-0.041  Sum_probs=64.9

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~-~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||..-.         .+........+..+|++++|+|+.++.+..+.     .+..... +.|+++|+||+|+.+
T Consensus        61 ~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  131 (218)
T 4djt_A           61 IKFNVWDTAGQ---------EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN  131 (218)
T ss_dssp             EEEEEEEECSG---------GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred             EEEEEEecCCc---------hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            45778885332         11222223567889999999999876443322     1122222 579999999999986


Q ss_pred             HHHH-HHHH-HHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          162 MADR-NAWA-TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       162 ~~~~-~~w~-~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      .... .... ......+..++.+|+++|.|+.++.+.+.+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  173 (218)
T 4djt_A          132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF  173 (218)
T ss_dssp             ---CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence            5321 2222 23334567899999999999999876665543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.68  E-value=1.6e-05  Score=70.12  Aligned_cols=104  Identities=10%  Similarity=-0.011  Sum_probs=65.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||....         ..........+..+|++++|+|+..+.+.....  +..+.    .+.|+++|+||+|+.
T Consensus        56 ~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  126 (206)
T 2bcg_Y           56 TVKLQIWDTAGQ---------ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK  126 (206)
T ss_dssp             EEEEEEECCTTT---------TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EEEEEEEeCCCh---------HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            456788885332         112222335678999999999997654322211  11111    257899999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +...  ......+....+..++++|++.|.|+.++.+.+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  167 (206)
T 2bcg_Y          127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR  167 (206)
T ss_dssp             TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            6321  12222333456778999999999999988666544

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.67  E-value=1.9e-05  Score=80.87  Aligned_cols=58  Identities=17%  Similarity=0.295  Sum_probs=35.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccc---------------cC------CCCCceeEEEEEE---eCCcEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP---------------AA------PRPGVTRVLKWVR---FGKDLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~---------------v~------~~pgtT~~~~~~~---~~~~i~l~DTpG~  272 (383)
                      ..+|+++|.+|+|||||+|+|++.....               +.      ...|+|.+.....   -+..+.|+||||.
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~   92 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH   92 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence            3579999999999999999998632111               11      1345554422222   2456899999998


Q ss_pred             cc
Q 016762          273 IP  274 (383)
Q Consensus       273 i~  274 (383)
                      ..
T Consensus        93 ~d   94 (529)
T 2h5e_A           93 ED   94 (529)
T ss_dssp             TT
T ss_pred             hh
Confidence            53

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.67  E-value=1.5e-05  Score=70.73  Aligned_cols=106  Identities=14%  Similarity=0.097  Sum_probs=65.3

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l----~~~l~~k~~ilVlNK~DL  159 (383)
                      ....+.+||.....         .........+..+|++++|+|+.++.+....  .+    .....+.|+++|+||+|+
T Consensus        71 ~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  141 (207)
T 2fv8_A           71 KQVELALWDTAGQE---------DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL  141 (207)
T ss_dssp             EEEEEEEEECTTCT---------TCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred             EEEEEEEEECCCcH---------HHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhh
Confidence            34567888853321         1122223467899999999998765432221  11    122237899999999999


Q ss_pred             CCHHHHHHH--------------HHHHHHcCC-eEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMADRNAW--------------ATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~~~~w--------------~~~l~~~g~-~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+......+              .+.....+. .++.+|+++|.|+.++.+.+.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~  197 (207)
T 2fv8_A          142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA  197 (207)
T ss_dssp             GGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence            764322211              112223344 78899999999999887665543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.67  E-value=0.0001  Score=64.12  Aligned_cols=100  Identities=9%  Similarity=-0.032  Sum_probs=63.9

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEE
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLN  155 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l-----~~k~~ilVlN  155 (383)
                      +......+.+||......         ..     .+..+|+++.|+|..++.+..+. . +..+.     .+.|+++|.|
T Consensus        62 ~~~~~~~l~i~Dt~G~~~---------~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  127 (184)
T 3ihw_A           62 VDGQSYLLLIRDEGGPPE---------LQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGT  127 (184)
T ss_dssp             ETTEEEEEEEEECSSSCC---------HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEE
T ss_pred             ECCEEEEEEEEECCCChh---------hh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            334456678898543311         11     67789999999999875443321 1 22221     2468999999


Q ss_pred             ccCCC-------CHHHHHHHHHHHHHcC-CeEEEeeCcCCCchhhhhHHHHH
Q 016762          156 REDMI-------SMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       156 K~DL~-------~~~~~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      |+|+.       ..++...|   ....+ ..++.+|+++|.|+.++.+.+.+
T Consensus       128 K~Dl~~~~~~~v~~~~~~~~---~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~  176 (184)
T 3ihw_A          128 QDAISAANPRVIDDSRARKL---STDLKRCTYYETCATYGLNVERVFQDVAQ  176 (184)
T ss_dssp             CTTCBTTBCCCSCHHHHHHH---HHHTTTCEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             CcccccccccccCHHHHHHH---HHHcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99993       23333333   34444 67899999999999988665443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.66  E-value=3.2e-06  Score=75.65  Aligned_cols=24  Identities=38%  Similarity=0.569  Sum_probs=21.5

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..+|+++|++|||||||+|+|++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.65  E-value=3.1e-05  Score=72.42  Aligned_cols=57  Identities=26%  Similarity=0.417  Sum_probs=33.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccC-------CCCCceeE--E----EEEEeCCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV--L----KWVRFGKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-------~~pgtT~~--~----~~~~~~~~i~l~DTpG~i~  274 (383)
                      +++++||-+|+|||||||.|+|......+       +.+.+++.  +    |...+...+.+.|||||-.
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~   72 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGD   72 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--C
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhh
Confidence            57999999999999999999975432222       22233221  1    1111234678999999964

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.65  E-value=4.9e-05  Score=75.03  Aligned_cols=94  Identities=17%  Similarity=0.064  Sum_probs=61.9

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCC-H
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMIS-M  162 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~-~  162 (383)
                      +..+.+||.        ||| ..+.+.+...+..+|++++|+|+..+......+....+  .+.| +++++||+|+.+ .
T Consensus        74 ~~~~~iiDt--------pG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~  144 (405)
T 2c78_A           74 KRHYSHVDC--------PGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP  144 (405)
T ss_dssp             SCEEEEEEC--------CCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH
T ss_pred             CeEEEEEEC--------CCh-HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH
Confidence            456778874        555 34566677788999999999999876543322222222  2567 789999999984 3


Q ss_pred             HHHH----HHHHHHHHcC-----CeEEEeeCcCCCc
Q 016762          163 ADRN----AWATYFAKQG-----TKVIFSNGQLGMG  189 (383)
Q Consensus       163 ~~~~----~w~~~l~~~g-----~~vi~iSa~~g~G  189 (383)
                      +..+    ...+++...+     ..++++|+++|.|
T Consensus       145 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          145 ELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            2211    2333444444     4688999998876

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.65  E-value=1.3e-05  Score=80.75  Aligned_cols=58  Identities=24%  Similarity=0.236  Sum_probs=32.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCcc------------------------cc------CCCCCceeEEEEE--Ee-CC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------PA------APRPGVTRVLKWV--RF-GK  262 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~------------------------~v------~~~pgtT~~~~~~--~~-~~  262 (383)
                      ..++|+++|.+|+|||||+|+|+.....                        .+      ....|+|.+....  .. +.
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~  121 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  121 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence            3578999999999999999999742110                        01      1235778776432  22 45


Q ss_pred             cEEEEecCccc
Q 016762          263 DLEFLDSPGII  273 (383)
Q Consensus       263 ~i~l~DTpG~i  273 (383)
                      .+.++||||..
T Consensus       122 ~~~iiDtPGh~  132 (467)
T 1r5b_A          122 RFSLLDAPGHK  132 (467)
T ss_dssp             EEEECCCCC--
T ss_pred             EEEEEECCCcH
Confidence            68999999974

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.65  E-value=0.00013  Score=67.25  Aligned_cols=79  Identities=11%  Similarity=0.001  Sum_probs=53.9

Q ss_pred             hcCeEEEEEecCCC--CCCCcHH--HHHH-----hcCCCeEEEEEccCCCCHHHHHHHHHHHHH-cCCeEEEeeCcCCCc
Q 016762          120 LMDVVIEVRDARIP--LSTTHPL--MDQW-----LGNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG  189 (383)
Q Consensus       120 r~DlILeV~DaR~p--~~~~~~~--l~~~-----l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~-~g~~vi~iSa~~g~G  189 (383)
                      .+|+++.|+|+.++  .+.....  +..+     ..+.|+++|.||+||.+........+.... .+..++.+|+++|.|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g  241 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN  241 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence            69999999999876  4332211  1221     136899999999999876555444333333 367788999999999


Q ss_pred             hhhhhHHHH
Q 016762          190 TMKLSRLAK  198 (383)
Q Consensus       190 i~~L~~~l~  198 (383)
                      +.++.+.+.
T Consensus       242 v~elf~~l~  250 (255)
T 3c5h_A          242 VDLAFSTLV  250 (255)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988866554

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.65  E-value=1.6e-05  Score=68.48  Aligned_cols=106  Identities=12%  Similarity=0.027  Sum_probs=65.4

Q ss_pred             CcEEEEcCCCCCcCCCchHHHH-HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAK-TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~-~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||..-...  +....+. ........+..+|++++|+|+..+.+.....+...+     .+.|+++|+||+||..
T Consensus        52 ~~~~l~Dt~G~~~--~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           52 MPLHIIDTAGLRE--ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG  129 (172)
T ss_dssp             EEEEEEECCCCSC--CSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred             eEEEEEECCCccc--chhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence            4577888543211  1111221 122334568999999999999887765543322221     1579999999999853


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       162 ~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ...  .+   ....+..++++|+++|.|+.++.+.+.+.
T Consensus       130 ~~~--~~---~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  163 (172)
T 2gj8_A          130 ETL--GM---SEVNGHALIRLSARTGEGVDVLRNHLKQS  163 (172)
T ss_dssp             CCC--EE---EEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             chh--hh---hhccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            210  01   11124568889999999999887766544

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.64  E-value=6.2e-05  Score=65.93  Aligned_cols=84  Identities=12%  Similarity=-0.050  Sum_probs=55.3

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCCCCHHH--------------HHHHHHHHHHc
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQ  175 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~--~----l~~~l~~k~~ilVlNK~DL~~~~~--------------~~~w~~~l~~~  175 (383)
                      ..+..+|++++|+|+.++.+..+.  .    +.....+.|+++|+||+|+.+...              ...........
T Consensus        87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  166 (201)
T 2q3h_A           87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI  166 (201)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence            467889999999999765443322  1    112223789999999999975211              11111222344


Q ss_pred             CC-eEEEeeCcCCCchhhhhHHHHH
Q 016762          176 GT-KVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       176 g~-~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +. .++.+|+++|.|+.++.+.+.+
T Consensus       167 ~~~~~~~~Sa~~g~gi~~l~~~l~~  191 (201)
T 2q3h_A          167 KAASYIECSALTQKNLKEVFDAAIV  191 (201)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCcEEEEEecCCCCCHHHHHHHHHH
Confidence            55 7899999999999988766544

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=97.63  E-value=6e-05  Score=68.01  Aligned_cols=56  Identities=23%  Similarity=0.373  Sum_probs=34.2

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCC--CceeEEEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..||.+||-+|||||||+|+++... ......|  |.......+..+.   .+.+.||+|--
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe   73 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE   73 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred             cEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCch
Confidence            4689999999999999999998643 2222222  2222222333332   36799999963

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.63  E-value=2.1e-05  Score=70.46  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=22.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ...+|+++|.+|||||||+|+|.+.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999854

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.61  E-value=5.9e-05  Score=74.97  Aligned_cols=58  Identities=21%  Similarity=0.303  Sum_probs=38.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc---ccCCCCCceeEEEEEEe-C----CcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRF-G----KDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~---~v~~~pgtT~~~~~~~~-~----~~i~l~DTpG~i~  274 (383)
                      .++++|||.+|+|||||||.|.|....   .....++.|+....+.. .    ..+.+.|||||-.
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~  107 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD  107 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence            345999999999999999999986421   12224666665322211 1    2578999999964

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.61  E-value=0.00086  Score=57.57  Aligned_cols=109  Identities=17%  Similarity=0.058  Sum_probs=63.0

Q ss_pred             cEEEEcCCCC--CcCCCchHHHHHHHHHHHH----hhhcCeEEEEEecCCCCC-----------CCcHHHHHHh--cCCC
Q 016762           89 DLYYWTKSLR--PVQWYPGHIAKTEKELKDQ----LKLMDVVIEVRDARIPLS-----------TTHPLMDQWL--GNRK  149 (383)
Q Consensus        89 ~~vi~~~~L~--~~qw~Pgh~~~~~~~l~~~----idr~DlILeV~DaR~p~~-----------~~~~~l~~~l--~~k~  149 (383)
                      .+.+||...-  ...|-...+..+.......    .+.+++++.|.|+.....           ....++...+  .+.|
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  124 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP  124 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence            5778885431  1123322234444444433    555778888888653110           0011122222  3789


Q ss_pred             eEEEEEccCCCCHH--HHHHHHHHHHHcCC-------eEEEeeCcCCCchhhhhHHHHHh
Q 016762          150 RILVLNREDMISMA--DRNAWATYFAKQGT-------KVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       150 ~ilVlNK~DL~~~~--~~~~w~~~l~~~g~-------~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +++|+||+|+....  ....+.+   +.+.       .++++|+++|.|+.++.+.+.+.
T Consensus       125 iilv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  181 (190)
T 2cxx_A          125 TIVAVNKLDKIKNVQEVINFLAE---KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV  181 (190)
T ss_dssp             EEEEEECGGGCSCHHHHHHHHHH---HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred             eEEEeehHhccCcHHHHHHHHHH---HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHh
Confidence            99999999998753  2333333   3343       36899999999999886665443

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.61  E-value=1.3e-05  Score=74.29  Aligned_cols=111  Identities=14%  Similarity=0.035  Sum_probs=66.4

Q ss_pred             CCcEEEEcCCCCCcCCCch-HHHHHHHHHH-HHh--hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPG-HIAKTEKELK-DQL--KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pg-h~~~~~~~l~-~~i--dr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~  160 (383)
                      +.++.+||......- .+. ......+.+. ..+  ..+|+|+.|+|+..+  ..+..+...+.  +.|+++|+||+|+.
T Consensus        47 ~~~~~lvDtpG~~~~-~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~  123 (256)
T 3iby_A           47 EHLIEITDLPGVYSL-VANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIA  123 (256)
T ss_dssp             TEEEEEEECCCCSSC-C------CHHHHHHHHHHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred             CeEEEEEeCCCcccc-cccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence            447788885433211 010 0002222232 445  889999999999863  22223333333  68999999999987


Q ss_pred             CHHHHHHHH-HHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          161 SMADRNAWA-TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       161 ~~~~~~~w~-~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ......... ......|..++++|+++|.|+.+|.+.+.++
T Consensus       124 ~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          124 EHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            543211111 1223457889999999999999887665443

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.60  E-value=3.3e-05  Score=80.46  Aligned_cols=99  Identities=18%  Similarity=0.219  Sum_probs=62.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCC-------CCCcHHH---HHHhcCCCeEEEEE
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLM---DQWLGNRKRILVLN  155 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~-------~~~~~~l---~~~l~~k~~ilVlN  155 (383)
                      .+..+.+||.        ||| +.+.+.+...+..+|++|.|+|+..+.       .....+.   ...+..+++++|+|
T Consensus       243 ~~~~~~iiDT--------PG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvN  313 (611)
T 3izq_1          243 HRANFTIVDA--------PGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN  313 (611)
T ss_dssp             SSCEEEEEEC--------CSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred             CCceEEEEEC--------CCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence            3456777774        555 445666666789999999999998631       1111111   11122355899999


Q ss_pred             ccCCCCH--HH----HHHHHHHHHHcC-----CeEEEeeCcCCCchhhh
Q 016762          156 REDMISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       156 K~DL~~~--~~----~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L  193 (383)
                      |+|+.+.  ..    ......++...|     ..++++|+++|.|+.++
T Consensus       314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            9999872  11    222223344444     47899999999999865

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.59  E-value=5e-05  Score=75.81  Aligned_cols=98  Identities=14%  Similarity=0.127  Sum_probs=63.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHHH------HhcCCCeEEEEEc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQ------WLGNRKRILVLNR  156 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~----~~~~l~~------~l~~k~~ilVlNK  156 (383)
                      +..+.+||.        ||| ..+.+.+...+..+|+++.|+|+.++...    ...+..+      .+...++++++||
T Consensus        83 ~~~~~iiDt--------pG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK  153 (435)
T 1jny_A           83 KYFFTIIDA--------PGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK  153 (435)
T ss_dssp             SCEEEECCC--------SSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred             CeEEEEEEC--------CCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence            456777774        555 45566677788999999999999874110    1112111      1223468999999


Q ss_pred             cCCCC----HHH----HHHHHHHHHHcC-----CeEEEeeCcCCCchhhh
Q 016762          157 EDMIS----MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       157 ~DL~~----~~~----~~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L  193 (383)
                      +|+.+    .+.    .....+++...+     ..++++|++.|.|+.++
T Consensus       154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence            99987    221    223334445545     46889999999998744

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.59  E-value=0.00022  Score=62.42  Aligned_cols=103  Identities=8%  Similarity=-0.063  Sum_probs=63.7

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHH---HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEE
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKEL---KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVL  154 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l---~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-------~~k~~ilVl  154 (383)
                      .....+.+||......         +....   ...+..+|++++|+|+.++.......+..++       .+.|+++|.
T Consensus        66 ~~~~~l~i~Dt~G~~~---------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~  136 (196)
T 3llu_A           66 SSFVNFQIWDFPGQMD---------FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI  136 (196)
T ss_dssp             TTSCCEEEEECCSSCC---------TTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCeeEEEEEECCCCHH---------HHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            4557889999654321         11222   4567889999999999875211112222222       267999999


Q ss_pred             EccCCCCHHHH----HH----HHHHHHH-----cCCeEEEeeCcCCCchhhhhHHH
Q 016762          155 NREDMISMADR----NA----WATYFAK-----QGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       155 NK~DL~~~~~~----~~----w~~~l~~-----~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ||+||.+.+..    +.    ..+.+.+     .+..++.+|+++ .|+.++.+.+
T Consensus       137 nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l  191 (196)
T 3llu_A          137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV  191 (196)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred             eccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence            99999874321    11    1122222     345778899999 9988875543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.57  E-value=0.00013  Score=72.29  Aligned_cols=57  Identities=26%  Similarity=0.243  Sum_probs=36.1

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCc-----cccCCCCCceeEEEEEEe--CCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~~~pgtT~~~~~~~~--~~~i~l~DTpG~i~~  275 (383)
                      ..++|+|.+|||||||||.|+|-..     +.++. .-+|+.......  ..++.+.|+||+-..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t~~~~v~q~~~~~~ltv~D~~g~~~~  133 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMERHPYKHPNIPNVVFWDLPGIGST  133 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecceeEEeccccccCCeeehHhhcccch
Confidence            4699999999999999999998321     12222 123443222222  246899999999643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.57  E-value=2.3e-05  Score=78.87  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      ..+..+|++++|+|+..+......++...+..+|+++|+||+|+.+....... +.+ ..+..++.+|+++|.|+.+|.+
T Consensus       299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~-~~~-~~~~~~i~iSAktg~Gi~eL~~  376 (462)
T 3geh_A          299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSL-EYP-ENITQIVHTAAAQKQGIDSLET  376 (462)
T ss_dssp             CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTC-CCC-TTCCCEEEEBTTTTBSHHHHHH
T ss_pred             hhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHH-HHh-ccCCcEEEEECCCCCCHHHHHH
Confidence            45788999999999998777666666666677899999999999876542210 000 0245789999999999999877


Q ss_pred             HHHHh
Q 016762          196 LAKAL  200 (383)
Q Consensus       196 ~l~~l  200 (383)
                      .+.+.
T Consensus       377 ~i~~~  381 (462)
T 3geh_A          377 AILEI  381 (462)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.56  E-value=0.00014  Score=68.90  Aligned_cols=84  Identities=14%  Similarity=0.205  Sum_probs=61.8

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCC-HHHHHHHHHHHHH-cCC-eEEEeeCcCCCch
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS-MADRNAWATYFAK-QGT-KVIFSNGQLGMGT  190 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~-~~~~~~w~~~l~~-~g~-~vi~iSa~~g~Gi  190 (383)
                      ..++.+|++++|+|+.. .+.....+.+.+.  +.|+++++||+|+.. ......+.+.+.+ .+. .++++|+++|.|+
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v  162 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV  162 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence            34688999999999976 5544444555554  789999999999987 5555555555544 343 6889999999999


Q ss_pred             hhhhHHHHHh
Q 016762          191 MKLSRLAKAL  200 (383)
Q Consensus       191 ~~L~~~l~~l  200 (383)
                      .+|.+.+.+.
T Consensus       163 ~~l~~~i~~~  172 (301)
T 1ega_A          163 DTIAAIVRKH  172 (301)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9887766543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.55  E-value=0.0001  Score=76.39  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=68.1

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH-hcCCCeEEEEEccCCCCHHHH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW-LGNRKRILVLNREDMISMADR  165 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~-l~~k~~ilVlNK~DL~~~~~~  165 (383)
                      ..+.+||.        ||| ..+..++...+..+|.++.|+|+..+....... +... ..+.|+++++||+|+..... 
T Consensus        73 ~~inliDT--------PGh-~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~-  142 (600)
T 2ywe_A           73 YKLHLIDT--------PGH-VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADV-  142 (600)
T ss_dssp             EEEEEECC--------CCS-GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCH-
T ss_pred             EEEEEEEC--------CCc-HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCH-
Confidence            44556763        666 445666777889999999999998765433222 1112 24789999999999975321 


Q ss_pred             HHHHHHHHH-cCC---eEEEeeCcCCCchhhhhHHHHHh
Q 016762          166 NAWATYFAK-QGT---KVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       166 ~~w~~~l~~-~g~---~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ....+.+.+ .+.   .++++|+++|.|+.+|.+.+.+.
T Consensus       143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~  181 (600)
T 2ywe_A          143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNR  181 (600)
T ss_dssp             HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHh
Confidence            122222332 243   48999999999999887665443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.55  E-value=3.2e-05  Score=71.73  Aligned_cols=109  Identities=18%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHH-HHHh--hhcCeEEEEEecCCCCCCCcHHH-HHHh-cCCCeEEEEEccCCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKEL-KDQL--KLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMI  160 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l-~~~i--dr~DlILeV~DaR~p~~~~~~~l-~~~l-~~k~~ilVlNK~DL~  160 (383)
                      .+.++.+||......- .+-+.   .+.+ ...+  ..+|+|+.|+|+.....  ...+ .++. .+.|+++|+||+|+.
T Consensus        50 ~~~~~~l~DtpG~~~~-~~~~~---~e~v~~~~~~~~~~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~  123 (258)
T 3a1s_A           50 KGYTINLIDLPGTYSL-GYSSI---DEKIARDYLLKGDADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEA  123 (258)
T ss_dssp             TTEEEEEEECCCCSSC-CSSSH---HHHHHHHHHHHSCCSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred             CCeEEEEEECCCcCcc-CCCCH---HHHHHHHHHhhcCCCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCC
Confidence            3567889986433211 11111   1122 2333  68999999999976422  2222 2222 278999999999986


Q ss_pred             CHHHHHH-HHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          161 SMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       161 ~~~~~~~-w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ....... ........|..++++|+++|.|+.+|.+.+.+.
T Consensus       124 ~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (258)
T 3a1s_A          124 KKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEY  164 (258)
T ss_dssp             HHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHH
Confidence            5432111 112223457889999999999999987766554

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.55  E-value=9.7e-05  Score=75.60  Aligned_cols=66  Identities=18%  Similarity=0.173  Sum_probs=47.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS  161 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~  161 (383)
                      +..+.+||.        ||| ..+.......+..+|.+|.|+|+..+.......+...+  .+.|+++|+||+|+..
T Consensus        81 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           81 DYLINLLDT--------PGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             TEEEEEECC--------CCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred             CEEEEEEEC--------CCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence            456778884        444 34455667789999999999999887655444443333  3789999999999974

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.53  E-value=0.00014  Score=71.53  Aligned_cols=94  Identities=15%  Similarity=0.052  Sum_probs=61.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCC-H
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMIS-M  162 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~-~  162 (383)
                      +..+.+||.        ||| ..+.+.+...+..+|+++.|+|+..+......+...++  .+.| +++++||+|+.+ .
T Consensus        65 ~~~~~iiDt--------pG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~  135 (397)
T 1d2e_A           65 ARHYAHTDC--------PGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS  135 (397)
T ss_dssp             SCEEEEEEC--------SSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH
T ss_pred             CeEEEEEEC--------CCh-HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH
Confidence            456777773        777 45666777778999999999999876543222222222  2567 579999999985 3


Q ss_pred             HHH----HHHHHHHHHcC-----CeEEEeeCcCCCc
Q 016762          163 ADR----NAWATYFAKQG-----TKVIFSNGQLGMG  189 (383)
Q Consensus       163 ~~~----~~w~~~l~~~g-----~~vi~iSa~~g~G  189 (383)
                      +..    .+..+++...+     ..++++|+++|.+
T Consensus       136 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n  171 (397)
T 1d2e_A          136 EMVELVELEIRELLTEFGYKGEETPIIVGSALCALE  171 (397)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhccc
Confidence            221    22333454444     4688999988653

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.50  E-value=4.7e-05  Score=83.76  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=36.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc----c-----------ccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM----C-----------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~----~-----------~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ..++|+++|.+|+|||||+|+|++...    .           ..+...|+|.+...+.+   +..+.++||||..
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe  370 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA  370 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence            457899999999999999999986310    0           11235677776533333   3578999999974

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.50  E-value=0.00026  Score=69.16  Aligned_cols=105  Identities=16%  Similarity=0.075  Sum_probs=67.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCe-EEEEE-ccCCCCH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKR-ILVLN-REDMISM  162 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~-ilVlN-K~DL~~~  162 (383)
                      +..+.+||.        ||| +++.+.+...+..+|+++.|+| .........+...++  .+.|. ++++| |+|+ +.
T Consensus        59 ~~~i~iiDt--------PGh-~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~  127 (370)
T 2elf_A           59 GRNMVFVDA--------HSY-PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM  127 (370)
T ss_dssp             SSEEEEEEC--------TTT-TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH
T ss_pred             CeEEEEEEC--------CCh-HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH
Confidence            345677774        565 4456666677899999999999 543322112221211  25677 99999 9999 65


Q ss_pred             HHHHH----HHHHHHHcC---CeEEE--eeCcC---CCchhhhhHHHHHhhh
Q 016762          163 ADRNA----WATYFAKQG---TKVIF--SNGQL---GMGTMKLSRLAKALAS  202 (383)
Q Consensus       163 ~~~~~----w~~~l~~~g---~~vi~--iSa~~---g~Gi~~L~~~l~~l~~  202 (383)
                      +....    ..+++.+.+   ..+++  +|+++   |.|+.+|.+.+.++..
T Consensus       128 ~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          128 HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence            43322    222232222   57899  99999   9999998777665543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.49  E-value=0.00014  Score=73.28  Aligned_cols=89  Identities=17%  Similarity=0.145  Sum_probs=50.4

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCC--------CCCcHHHHHH-hcCCC-eEEEEEccCCCC----HHH----H
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPL--------STTHPLMDQW-LGNRK-RILVLNREDMIS----MAD----R  165 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~--------~~~~~~l~~~-l~~k~-~ilVlNK~DL~~----~~~----~  165 (383)
                      ||| ..+.+.+...+..+|++|+|+|+..+.        ......+... ..+.| +++++||+|+.+    .+.    .
T Consensus       129 PGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~  207 (467)
T 1r5b_A          129 PGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECV  207 (467)
T ss_dssp             CC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHH
T ss_pred             CCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHH
Confidence            777 556666777789999999999998763        1111112221 12555 899999999964    221    1


Q ss_pred             HHHHHHHHHc-C------CeEEEeeCcCCCchhhh
Q 016762          166 NAWATYFAKQ-G------TKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       166 ~~w~~~l~~~-g------~~vi~iSa~~g~Gi~~L  193 (383)
                      .+..+++... |      ..++++|+++|.|+.++
T Consensus       208 ~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          208 DKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  242 (467)
T ss_dssp             HHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             HHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence            2233444444 3      34788999999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.48  E-value=7e-05  Score=71.07  Aligned_cols=58  Identities=29%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCC------ceeEEE--EEEe-----CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG------VTRVLK--WVRF-----GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg------tT~~~~--~~~~-----~~~i~l~DTpG~i  273 (383)
                      ..++|+++|-+|||||||+|+|.+.+....+..++      .|....  .+..     ...+.+.||||+-
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~   87 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG   87 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence            45789999999999999999998753222221110      121111  1111     2357899999994

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.48  E-value=0.00012  Score=64.18  Aligned_cols=106  Identities=8%  Similarity=-0.028  Sum_probs=65.4

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEE
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLN  155 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-----~~k~~ilVlN  155 (383)
                      ....+.+||....         ..........+..+|++++|+|+.++.+....     ++....     .+.|+++|+|
T Consensus        55 ~~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n  125 (207)
T 1vg8_A           55 RLVTMQIWDTAGQ---------ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN  125 (207)
T ss_dssp             CEEEEEEEEECSS---------GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred             EEEEEEEEeCCCc---------HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence            3456788884332         11122223457889999999999765432221     111222     3679999999


Q ss_pred             ccCCCCHHH-HHHHHHHHH-HcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          156 REDMISMAD-RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       156 K~DL~~~~~-~~~w~~~l~-~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      |+|+..... ......+.. ..+..++.+|+++|.|+.++.+.+.+.
T Consensus       126 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  172 (207)
T 1vg8_A          126 KIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN  172 (207)
T ss_dssp             CTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence            999974321 122222233 345778999999999999887665443

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.48  E-value=9.7e-05  Score=64.90  Aligned_cols=106  Identities=9%  Similarity=-0.121  Sum_probs=65.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D  158 (383)
                      ....+.+||.....         .........+..+|+++.|+|+.++.+.....  +..+.     .+.|+++|+||+|
T Consensus        70 ~~~~~~l~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  140 (201)
T 3oes_A           70 DEFHLHLVDTAGQD---------EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD  140 (201)
T ss_dssp             -CEEEEEEEECCCC---------TTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTT
T ss_pred             EEEEEEEEECCCcc---------chHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            45667888854321         11112234678899999999998654332211  12221     1579999999999


Q ss_pred             CCCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       159 L~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +.+....  ..........+..++.+|+++|.|+.++.+.+.+.
T Consensus       141 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  184 (201)
T 3oes_A          141 LSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQE  184 (201)
T ss_dssp             CGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9744321  11222334557889999999999998886655443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.47  E-value=5.2e-05  Score=80.11  Aligned_cols=58  Identities=19%  Similarity=0.285  Sum_probs=34.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-----cc------CC------CCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v------~~------~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      ..+|+|+|.+|+|||||+|+|+.....     .+      .+      ..|+|.......+   +..+.|+||||...
T Consensus        12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            467999999999999999999832110     11      11      4466655433222   45689999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.46  E-value=9.5e-05  Score=62.90  Aligned_cols=76  Identities=22%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHH----HHHHHHHHHHHcCCeEEEeeCcCCCchhhh
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMA----DRNAWATYFAKQGTKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~----~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L  193 (383)
                      ..+|+++.|+|+...... ...+..+. .+.|+++|.||+|+....    +...|.   ...+..++++|+++|.|+.++
T Consensus        80 ~~~~~~i~v~D~~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~SA~~~~~v~~l  155 (165)
T 2wji_A           80 EKPDLVVNIVDATALERN-LYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE---KILGVKVVPLSAAKKMGIEEL  155 (165)
T ss_dssp             HCCSEEEEEEETTCHHHH-HHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH---HHHTSCEEECBGGGTBSHHHH
T ss_pred             CCCCEEEEEecCCchhHh-HHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH---HHhCCCEEEEEcCCCCCHHHH
Confidence            479999999998752110 01111221 378999999999985432    123332   334678899999999999988


Q ss_pred             hHHHH
Q 016762          194 SRLAK  198 (383)
Q Consensus       194 ~~~l~  198 (383)
                      .+.+.
T Consensus       156 ~~~l~  160 (165)
T 2wji_A          156 KKAIS  160 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.46  E-value=2.2e-05  Score=73.47  Aligned_cols=78  Identities=23%  Similarity=0.120  Sum_probs=54.3

Q ss_pred             hhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH----HHHHHHHHHHcCCeEEEeeCcCCCchh
Q 016762          118 LKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLGMGTM  191 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~----~~~w~~~l~~~g~~vi~iSa~~g~Gi~  191 (383)
                      .+.+|+++.|+|+....  ....+...+  .+.|+++|+||+|+.+...    ...+   ....|..++++|+++|.|+.
T Consensus        83 ~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l---~~~lg~~~i~~SA~~g~gi~  157 (274)
T 3i8s_A           83 SGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDAL---SARLGCPVIPLVSTRGRGIE  157 (274)
T ss_dssp             HTCCSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHH---HHHHTSCEEECCCGGGHHHH
T ss_pred             hcCCCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH---HHhcCCCEEEEEcCCCCCHH
Confidence            47999999999997632  222222222  2789999999999875432    2222   23457889999999999998


Q ss_pred             hhhHHHHHh
Q 016762          192 KLSRLAKAL  200 (383)
Q Consensus       192 ~L~~~l~~l  200 (383)
                      +|.+.+.+.
T Consensus       158 el~~~i~~~  166 (274)
T 3i8s_A          158 ALKLAIDRY  166 (274)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHH
Confidence            887665443

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.46  E-value=4.8e-05  Score=72.03  Aligned_cols=86  Identities=17%  Similarity=0.021  Sum_probs=56.9

Q ss_pred             HHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCCCCHHH--------------HHHHHHHHH
Q 016762          114 LKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD--------------RNAWATYFA  173 (383)
Q Consensus       114 l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~DL~~~~~--------------~~~w~~~l~  173 (383)
                      ....+..+|++++|+|+.++.+..+.      .+.....+.|+++|+||+|+.+...              .....++..
T Consensus       220 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  299 (332)
T 2wkq_A          220 RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK  299 (332)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence            34568899999999999765443221      1222223789999999999965321              111222333


Q ss_pred             HcCC-eEEEeeCcCCCchhhhhHHHHH
Q 016762          174 KQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       174 ~~g~-~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ..+. .++.+|+++|.|+.++.+.+.+
T Consensus       300 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~  326 (332)
T 2wkq_A          300 EIGAVKYLECSALTQRGLKTVFDEAIR  326 (332)
T ss_dssp             HTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HcCCcEEEEecCCCCcCHHHHHHHHHH
Confidence            4554 7899999999999988666543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.42  E-value=7.3e-05  Score=74.29  Aligned_cols=59  Identities=22%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccC------CCCCceeEEEEEE-------eCCcEEEEecCcccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA------PRPGVTRVLKWVR-------FGKDLEFLDSPGIIP  274 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~------~~pgtT~~~~~~~-------~~~~i~l~DTpG~i~  274 (383)
                      +..++|+|||-+|||||||+|.|+|......+      +.+.++. ...+.       ....+.+.||||+-.
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~-~~~i~~v~q~~~~~~~Ltv~Dt~g~~~  100 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ-VEQSKVLIKEGGVQLLLTIVDTPGFGD  100 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE-EEEEECC------CEEEEEEECC----
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee-eeeEEEEEecCCcccceeeeechhhhh
Confidence            34578999999999999999999986532121      0111221 11111       112578999999964

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.41  E-value=0.00047  Score=75.97  Aligned_cols=96  Identities=18%  Similarity=0.105  Sum_probs=63.9

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHH-H----HHHHHHHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMAD-R----NAWATYFAK  174 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~~~-~----~~w~~~l~~  174 (383)
                      .||| ..+.+.+...+..+|++|+|+|+..+......+....+  .+.| +++++||+|+.+..+ .    .+..+++..
T Consensus       366 TPGH-edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~  444 (1289)
T 3avx_A          366 CPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ  444 (1289)
T ss_dssp             CCCH-HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCh-HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence            3887 45667777778999999999999987654433322222  2667 689999999985321 1    223334544


Q ss_pred             cC-----CeEEEeeCcCC--------CchhhhhHHHHH
Q 016762          175 QG-----TKVIFSNGQLG--------MGTMKLSRLAKA  199 (383)
Q Consensus       175 ~g-----~~vi~iSa~~g--------~Gi~~L~~~l~~  199 (383)
                      .|     ..++++|+++|        .|+.+|.+.+.+
T Consensus       445 ~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          445 YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             TTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence            44     46899999998        456666555544

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.38  E-value=6.5e-05  Score=75.52  Aligned_cols=98  Identities=13%  Similarity=0.085  Sum_probs=62.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------CcHH-HHHH-hcCCC-eEEEEEc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPL-MDQW-LGNRK-RILVLNR  156 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~-------~~~~-l~~~-l~~k~-~ilVlNK  156 (383)
                      +..+.+||.        ||| +.+.+.+...+..+|++|+|+|+..+...       ...+ +... ..+.| +++|+||
T Consensus        84 ~~~~~iiDt--------PGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK  154 (458)
T 1f60_A           84 KYQVTVIDA--------PGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK  154 (458)
T ss_dssp             SEEEEEEEC--------CCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             CceEEEEEC--------CCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEc
Confidence            446778884        555 45666667778999999999999864211       1111 1111 12444 8899999


Q ss_pred             cCCCC--HHHH----HHHHHHHHHcC-----CeEEEeeCcCCCchhhh
Q 016762          157 EDMIS--MADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       157 ~DL~~--~~~~----~~w~~~l~~~g-----~~vi~iSa~~g~Gi~~L  193 (383)
                      +|+.+  .+..    ....+++...|     ..++++|+++|.|+.++
T Consensus       155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            99983  3322    22333444444     46899999999998644

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.37  E-value=4.7e-05  Score=70.28  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=22.8

Q ss_pred             CceEEeEeecC---------CCChhHHHHhhhcC
Q 016762          216 RAVRAGIVGYP---------NVGKSSLINRLLKR  240 (383)
Q Consensus       216 ~~~~v~lvG~p---------NvGKSTLiN~L~~~  240 (383)
                      ..++|++||.+         |||||||+|+|++.
T Consensus        18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~   51 (255)
T 3c5h_A           18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP   51 (255)
T ss_dssp             SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred             ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence            45899999999         99999999999974

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.37  E-value=4.5e-05  Score=65.99  Aligned_cols=105  Identities=15%  Similarity=0.090  Sum_probs=63.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~DL  159 (383)
                      ....+.+||....         ..........+..+|++++|+|+.++.+..+.      ++.....+.|+++|.||+|+
T Consensus        53 ~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  123 (184)
T 1m7b_A           53 QRIELSLWDTSGS---------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL  123 (184)
T ss_dssp             CEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred             EEEEEEEEECCCC---------hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchh
Confidence            3456788884322         11122223467899999999999765433221      12222237899999999999


Q ss_pred             CCHHH--------------HHHHHHHHHHcC-CeEEEeeCc-CCCchhhhhHHHHH
Q 016762          160 ISMAD--------------RNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKA  199 (383)
Q Consensus       160 ~~~~~--------------~~~w~~~l~~~g-~~vi~iSa~-~g~Gi~~L~~~l~~  199 (383)
                      .+...              .....++..+.+ ..++.+|++ .|.|+.++.+.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~  179 (184)
T 1m7b_A          124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL  179 (184)
T ss_dssp             GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred             hcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHH
Confidence            74210              111112233345 578899998 68888887665543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.36  E-value=9e-05  Score=75.27  Aligned_cols=31  Identities=19%  Similarity=0.317  Sum_probs=24.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhh------cCCccccC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLL------KRRMCPAA  246 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~------~~~~~~v~  246 (383)
                      .+..|+++|.|||||||++|.|.      |++++.++
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd  136 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC  136 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence            35679999999999999999998      66554443

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.36  E-value=5.9e-05  Score=67.03  Aligned_cols=106  Identities=15%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNRED  158 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~D  158 (383)
                      .....+.+||....         .+........+..+|++++|+|+.++.+..+.      ++.....+.|+++|.||+|
T Consensus        73 ~~~~~l~i~Dt~G~---------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D  143 (205)
T 1gwn_A           73 TQRIELSLWDTSGS---------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD  143 (205)
T ss_dssp             SSEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGG
T ss_pred             CEEEEEEEEeCCCc---------HhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechh
Confidence            34466788885332         11122223467899999999999865433221      1222223689999999999


Q ss_pred             CCCHHH--------------HHHHHHHHHHcC-CeEEEeeCc-CCCchhhhhHHHHH
Q 016762          159 MISMAD--------------RNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~--------------~~~w~~~l~~~g-~~vi~iSa~-~g~Gi~~L~~~l~~  199 (383)
                      +.+...              .....++..+.+ ..++.+|++ .|.|+.++.+.+.+
T Consensus       144 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~  200 (205)
T 1gwn_A          144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL  200 (205)
T ss_dssp             GGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred             hccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHH
Confidence            974210              111112233445 578899998 68889888665543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.35  E-value=0.00056  Score=62.53  Aligned_cols=111  Identities=14%  Similarity=0.108  Sum_probs=65.6

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-H----HH--HhcCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQ--WLGNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l----~~--~l~~k~~ilVlNK~DL  159 (383)
                      +.+++++|..-.-   -+.....+...+.+.+.. ++|+.++|+.......... .    ..  ...+.|.++|+||+|+
T Consensus       108 ~~d~iiiDtpG~~---~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~  183 (262)
T 1yrb_A          108 ENDYVLIDTPGQM---ETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL  183 (262)
T ss_dssp             HCSEEEEECCSSH---HHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGG
T ss_pred             cCCEEEEeCCCcc---chhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccc
Confidence            4699999964331   000011113334445566 8999999987543332211 0    01  1126899999999999


Q ss_pred             CCHHHH---HHHHH-------H------------------HHHcC--CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          160 ISMADR---NAWAT-------Y------------------FAKQG--TKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       160 ~~~~~~---~~w~~-------~------------------l~~~g--~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      .+..+.   ..+.+       .                  ....+  ..++++|+++|.|+.+|.+.+.+..
T Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence            876532   22211       1                  12223  3688999999999999877766544

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.35  E-value=0.00013  Score=74.61  Aligned_cols=105  Identities=12%  Similarity=0.139  Sum_probs=63.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH----HhcCCCeEEEEEccCCCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ----WLGNRKRILVLNREDMIS  161 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~----~l~~k~~ilVlNK~DL~~  161 (383)
                      .+..+.+||......         +.......+..+|+++.|+|+...  .....+..    ...+.|+++|+||+|+.+
T Consensus        96 ~~~~~~i~Dt~G~e~---------~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~  164 (535)
T 3dpu_A           96 KECLFHFWDFGGQEI---------MHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP  164 (535)
T ss_dssp             TTCEEEEECCCSCCT---------TTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred             ceEEEEEEECCcHHH---------HHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence            467788998654211         111222457789999999999754  11122222    223589999999999976


Q ss_pred             HHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       162 ~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      ...  .....+.+...+..++.+|+++|.|+.+|.+.+.+..
T Consensus       165 ~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~  206 (535)
T 3dpu_A          165 SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV  206 (535)
T ss_dssp             TCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence            432  2333344555677799999999999999877665543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.33  E-value=7e-05  Score=74.52  Aligned_cols=87  Identities=11%  Similarity=0.134  Sum_probs=59.2

Q ss_pred             HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHH-HcCCeEEEeeCcCCC
Q 016762          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGM  188 (383)
Q Consensus       112 ~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~-~~g~~vi~iSa~~g~  188 (383)
                      +.....+..+|++|+|+|+  ........+...+  .+.|+++|+||+|+.+.... ...+.+. ..+..++++|+++|.
T Consensus       105 ~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~  181 (423)
T 3qq5_A          105 EKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKK  181 (423)
T ss_dssp             HHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred             HHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCC
Confidence            3355678899999999998  2222222333332  27899999999999865433 1222222 345678899999999


Q ss_pred             chhhhhHHHHHhh
Q 016762          189 GTMKLSRLAKALA  201 (383)
Q Consensus       189 Gi~~L~~~l~~l~  201 (383)
                      |+.++.+.+.+..
T Consensus       182 gI~eL~~~L~~~l  194 (423)
T 3qq5_A          182 GFDDIGKTISEIL  194 (423)
T ss_dssp             STTTHHHHHHHHS
T ss_pred             CHHHHHHHHHHhh
Confidence            9999877766554

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.32  E-value=0.00036  Score=65.21  Aligned_cols=106  Identities=16%  Similarity=0.103  Sum_probs=64.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHh--hhcCeEEEEEecCCCCCCCcHHHHH-Hh-cCCCeEEEEEccCCCCH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISM  162 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~i--dr~DlILeV~DaR~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~  162 (383)
                      +.++.+||...... ..+....  +......+  ..+|+++.|+|+....  ....+.. +. .+.|+++|+||+|+...
T Consensus        48 ~~~l~l~DtpG~~~-~~~~~~~--e~v~~~~~~~~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~  122 (272)
T 3b1v_A           48 NKDLEIQDLPGIYS-MSPYSPE--AKVARDYLLSQRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDG  122 (272)
T ss_dssp             CTTEEEEECCCCSC-SSCSSHH--HHHHHHHHHTTCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHH
T ss_pred             CCeEEEEECCCcCc-cCCCChH--HHHHHHHHhcCCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCc
Confidence            67889999543211 0111111  11122334  3699999999987531  1222222 22 37899999999998643


Q ss_pred             H----HHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          163 A----DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       163 ~----~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .    ....+.   ...|..++++|+++|.|+.+|.+.+.+.
T Consensus       123 ~~~~~~~~~l~---~~lg~~vi~~SA~~g~gi~el~~~i~~~  161 (272)
T 3b1v_A          123 QGKKINVDKLS---YHLGVPVVATSALKQTGVDQVVKKAAHT  161 (272)
T ss_dssp             TTCCCCHHHHH---HHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred             CCcHHHHHHHH---HHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence            2    223332   2347789999999999999887766443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.00012  Score=65.57  Aligned_cols=104  Identities=10%  Similarity=-0.033  Sum_probs=62.7

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||..-.         ..........+..+|++++|+|+..+.+.....  +..+.    .+.|+++|+||+|+.
T Consensus        61 ~~~~~i~Dt~G~---------~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~  131 (223)
T 3cpj_B           61 RIKAQIWDTAGQ---------ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA  131 (223)
T ss_dssp             EEEEEEECCTTT---------TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred             EEEEEEEECCCc---------cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            356778885332         112222335678999999999987654432211  11111    267899999999996


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      ....  ......+....+..++++|+++|.|+.++.+.+.+
T Consensus       132 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  172 (223)
T 3cpj_B          132 HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELIN  172 (223)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            5321  12222334456778899999999999988765543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.32  E-value=0.00018  Score=62.46  Aligned_cols=104  Identities=10%  Similarity=-0.042  Sum_probs=64.3

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh----cCCCeEEEEE
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLN  155 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l----~~k~~ilVlN  155 (383)
                      .....+.+||.....         +... +...+..+|.++.|+|..++.+..+..     +....    .+.|+++|+|
T Consensus        66 ~~~~~l~i~Dt~G~~---------~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n  135 (187)
T 3c5c_A           66 HQPVHLRVMDTADLD---------TPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGN  135 (187)
T ss_dssp             TEEEEEEEEECCC------------CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred             CEEEEEEEEECCCCC---------cchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence            344567788853321         1111 235778899999999998654332211     11111    3689999999


Q ss_pred             ccCCCCHHH--HHHHHHHHHHcCCeEEEeeC-cCCCchhhhhHHHH
Q 016762          156 REDMISMAD--RNAWATYFAKQGTKVIFSNG-QLGMGTMKLSRLAK  198 (383)
Q Consensus       156 K~DL~~~~~--~~~w~~~l~~~g~~vi~iSa-~~g~Gi~~L~~~l~  198 (383)
                      |+|+.....  .....++..+.+..++.+|+ ++|.|+.++.+.+.
T Consensus       136 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~  181 (187)
T 3c5c_A          136 KLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV  181 (187)
T ss_dssp             CGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHH
T ss_pred             CcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHH
Confidence            999964321  12222334455788999999 89999988865543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=97.32  E-value=8.3e-05  Score=77.15  Aligned_cols=57  Identities=26%  Similarity=0.382  Sum_probs=29.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccc--------------cCCCCCceeEEEEEEe------C--CcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF------G--KDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~--------------v~~~pgtT~~~~~~~~------~--~~i~l~DTpG~i~  274 (383)
                      .+|+|+|.+|+|||||+|+|+......              .+...|.|...+...+      +  ..+.|+||||...
T Consensus         5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            479999999999999999998532111              1113566765433322      1  3577999999864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.31  E-value=0.00011  Score=68.20  Aligned_cols=81  Identities=22%  Similarity=0.342  Sum_probs=54.6

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHHH-HHh-cC-CCeEEEEEccCCCCHHHHHH-HHHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GN-RKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l~-~~l-~~-k~~ilVlNK~DL~~~~~~~~-w~~~l~~~g~~vi~iSa~~g~Gi~~L~  194 (383)
                      ..+|+++.|+|+..+.  .+..+. ++. .+ .|+++|+||+|+.+...... .....+..|..++++|++.|.|+.++.
T Consensus        80 ~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~  157 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELK  157 (271)
T ss_dssp             TCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHH
T ss_pred             cCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHH
Confidence            7899999999998642  122211 121 24 89999999999875432111 111223457889999999999999987


Q ss_pred             HHHHHhh
Q 016762          195 RLAKALA  201 (383)
Q Consensus       195 ~~l~~l~  201 (383)
                      +.+.++.
T Consensus       158 ~~i~~~~  164 (271)
T 3k53_A          158 RMIALMA  164 (271)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766553

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.31  E-value=6.5e-05  Score=77.90  Aligned_cols=58  Identities=29%  Similarity=0.435  Sum_probs=32.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccc--------------cCCCCCceeEEEEEEe------C--CcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF------G--KDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~--------------v~~~pgtT~~~~~~~~------~--~~i~l~DTpG~i~  274 (383)
                      ..+|+++|.+|+|||||+|+|+......              .+...|.|...+...+      +  ..+.|+||||...
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            3479999999999999999997532111              1112455654321111      1  2467999999974

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.28  E-value=0.00012  Score=79.11  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=21.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      ..+|+|+|.+|+|||||+|+|++..
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~~   43 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQRA   43 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhc
Confidence            3579999999999999999998653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.28  E-value=0.00054  Score=64.97  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHH-HHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHH---hcCCCeEEEEEcc
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKT-EKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQW---LGNRKRILVLNRE  157 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~-~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~---l~~k~~ilVlNK~  157 (383)
                      +..+.+||...   |  ...+.+. .......+..+|+++.|+|+.++.+..+..     +..+   ..+.|+++|+||+
T Consensus        51 ~~~l~i~Dt~G---~--~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~  125 (307)
T 3r7w_A           51 NMTLNLWDCGG---Q--DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKM  125 (307)
T ss_dssp             TEEEEEEEECC---S--HHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred             ceEEEEEECCC---c--HHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecc
Confidence            46678888432   2  0001111 223346679999999999998765544331     2222   1278999999999


Q ss_pred             CCCCHHHHH--------HHHHHHHHcC---CeEEEeeCcCCCchhh
Q 016762          158 DMISMADRN--------AWATYFAKQG---TKVIFSNGQLGMGTMK  192 (383)
Q Consensus       158 DL~~~~~~~--------~w~~~l~~~g---~~vi~iSa~~g~Gi~~  192 (383)
                      |+...+...        ...+.....|   ..++.+|++. .|+.+
T Consensus       126 Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e  170 (307)
T 3r7w_A          126 DLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYK  170 (307)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHH
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHH
Confidence            999843322        1222233445   5788899988 44443

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.27  E-value=0.00012  Score=75.84  Aligned_cols=104  Identities=19%  Similarity=0.173  Sum_probs=64.6

Q ss_pred             cEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH---
Q 016762           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA---  163 (383)
Q Consensus        89 ~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~---  163 (383)
                      .+.+||.        ||| ..+.......+..+|+++.|+|+.++......+....+  .+.|+++++||+|+.+..   
T Consensus        71 ~i~liDT--------PGh-e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~  141 (594)
T 1g7s_A           71 GLFFIDT--------PGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH  141 (594)
T ss_dssp             EEEEECC--------CTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC
T ss_pred             CEEEEEC--------CCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc
Confidence            4778884        343 11222222346779999999999886443222222222  378999999999997421   


Q ss_pred             --------------H--------HHHHHHHHHHcC---------------CeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          164 --------------D--------RNAWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       164 --------------~--------~~~w~~~l~~~g---------------~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                                    .        .....+.+...|               ..++++|+++|.|+.+|.+.+..+.
T Consensus       142 ~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~  216 (594)
T 1g7s_A          142 EGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA  216 (594)
T ss_dssp             TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence                          0        112223333333               2578899999999999987776554

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.27  E-value=0.00022  Score=75.48  Aligned_cols=58  Identities=21%  Similarity=0.304  Sum_probs=38.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-----------ccCC------CCCceeEEEEEEe---C-------CcEEEEec
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWVRF---G-------KDLEFLDS  269 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----------~v~~------~pgtT~~~~~~~~---~-------~~i~l~DT  269 (383)
                      ..+|+|+|.+|+|||||+|+|+.....           .+.+      ..|.|.......+   +       ..+.|+||
T Consensus        10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT   89 (704)
T 2rdo_7           10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT   89 (704)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence            457999999999999999999743111           0111      3466665433222   2       56889999


Q ss_pred             Ccccc
Q 016762          270 PGIIP  274 (383)
Q Consensus       270 pG~i~  274 (383)
                      ||...
T Consensus        90 PG~~d   94 (704)
T 2rdo_7           90 PGHVD   94 (704)
T ss_pred             CCccc
Confidence            99864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.23  E-value=0.00056  Score=67.85  Aligned_cols=86  Identities=26%  Similarity=0.324  Sum_probs=61.0

Q ss_pred             HHhhhcCeEEEEEecC-CCCCCCc---HHHHHH---hcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCC
Q 016762          116 DQLKLMDVVIEVRDAR-IPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM  188 (383)
Q Consensus       116 ~~idr~DlILeV~DaR-~p~~~~~---~~l~~~---l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~  188 (383)
                      +.+++++.+|+++|+. .+.....   .++..+   +..+|.++|+||+|+........+.+.+...+..++++|++++.
T Consensus       231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~  310 (416)
T 1udx_A          231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGA  310 (416)
T ss_dssp             HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred             HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence            4578999999999985 2221111   122222   23689999999999988755555656666667789999999999


Q ss_pred             chhhhhHHHHHhh
Q 016762          189 GTMKLSRLAKALA  201 (383)
Q Consensus       189 Gi~~L~~~l~~l~  201 (383)
                      |+.+|.+.+.++.
T Consensus       311 gi~eL~~~i~~~l  323 (416)
T 1udx_A          311 GLPALKEALHALV  323 (416)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999877665544

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.22  E-value=0.00083  Score=65.41  Aligned_cols=91  Identities=15%  Similarity=0.018  Sum_probs=58.3

Q ss_pred             HHHHHHhhhcCeEEEEEecCCCCCCCcHHH---HHH---h--cCCCeEEEEEccCCCCHHHH--HHHHH-HHHHc-C--C
Q 016762          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLM---DQW---L--GNRKRILVLNREDMISMADR--NAWAT-YFAKQ-G--T  177 (383)
Q Consensus       112 ~~l~~~idr~DlILeV~DaR~p~~~~~~~l---~~~---l--~~k~~ilVlNK~DL~~~~~~--~~w~~-~l~~~-g--~  177 (383)
                      +.+.+.+..+|++++|+|+..+......++   ...   +  .++|+++|.||+|+.+....  ..... ..+.. .  .
T Consensus       249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~  328 (364)
T 2qtf_A          249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF  328 (364)
T ss_dssp             HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred             HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            344456899999999999876541111111   111   2  36899999999999864311  11111 11233 2  3


Q ss_pred             eEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          178 KVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       178 ~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                      .++++|+++|.|+.+|.+.+.++..
T Consensus       329 ~~~~~SA~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          329 DVIPISALKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCcCHHHHHHHHHHHhc
Confidence            5788999999999999888776543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.21  E-value=5e-05  Score=69.71  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=26.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhh-----cCCccccCCCCC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAPRPG  250 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~-----~~~~~~v~~~pg  250 (383)
                      ...+.++|.+||||||++|.|.     +++.+.+..-|+
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~   52 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG   52 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4568999999999999999998     666555554443

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.15  E-value=0.00076  Score=60.38  Aligned_cols=107  Identities=13%  Similarity=0.001  Sum_probs=62.8

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcH-HH-HHHh-----cCCCeEEEEE
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLN  155 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~idr~DlILeV~DaR~p~~~~~~-~l-~~~l-----~~k~~ilVlN  155 (383)
                      ......+++||..-+..|         .+.+. .....+|.++.|+|..++.+..+. .+ ..+.     .+.|+++|.|
T Consensus        83 ~~~~~~l~~~Dt~g~~~~---------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgN  153 (211)
T 2g3y_A           83 DGESATIILLDMWENKGE---------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN  153 (211)
T ss_dssp             TTEEEEEEEECCTTTTHH---------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred             CCeeeEEEEeecCCCcch---------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            334456678885322111         12222 235678999999998764333221 11 1121     2579999999


Q ss_pred             ccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          156 REDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       156 K~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      |+||.....  ......+....+..++++|+++|.|+.++.+.+.+
T Consensus       154 K~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~  199 (211)
T 2g3y_A          154 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR  199 (211)
T ss_dssp             CTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999964321  11111222344678889999999999988665543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.14  E-value=0.0013  Score=61.00  Aligned_cols=79  Identities=10%  Similarity=0.029  Sum_probs=45.8

Q ss_pred             cCeEEEEEec-CCCCCCCcHHHHHHhc-CCCeEEEEEccCCCCHHHHHHH----HHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762          121 MDVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       121 ~DlILeV~Da-R~p~~~~~~~l~~~l~-~k~~ilVlNK~DL~~~~~~~~w----~~~l~~~g~~vi~iSa~~g~Gi~~L~  194 (383)
                      +|+++++++. +.+....+.++.+.+. +.|+++|+||+|+.+..+....    .+.+...+..++.+|+..+.|+.++.
T Consensus       116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~  195 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV  195 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred             eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence            7788888854 3345555555545444 7899999999999987665433    34455567778889999999988876


Q ss_pred             HHHHH
Q 016762          195 RLAKA  199 (383)
Q Consensus       195 ~~l~~  199 (383)
                      +.+.+
T Consensus       196 ~~l~~  200 (274)
T 3t5d_A          196 KKIKD  200 (274)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            65543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.14  E-value=1.2e-05  Score=82.45  Aligned_cols=119  Identities=18%  Similarity=0.147  Sum_probs=72.9

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH--HHHHHHHHH----HHcC--CeEEEeeCc
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYF----AKQG--TKVIFSNGQ  185 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--~~~~w~~~l----~~~g--~~vi~iSa~  185 (383)
                      ..+..+|++++|+|+.++......+....+  .+.|+++++||+|+....  ........+    ...+  ..++++|++
T Consensus        71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk  150 (537)
T 3izy_P           71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL  150 (537)
T ss_dssp             SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred             HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence            456889999999999886554433333322  368999999999997432  111111111    0111  357789999


Q ss_pred             CCCchhhhhHHHHHhhhhhhhhhhcc------------CCCCCceEEeEeecCCCChhHHH
Q 016762          186 LGMGTMKLSRLAKALASDVNVKRRSK------------GLLPRAVRAGIVGYPNVGKSSLI  234 (383)
Q Consensus       186 ~g~Gi~~L~~~l~~l~~~~~~~~~~~------------~~~~~~~~v~lvG~pNvGKSTLi  234 (383)
                      +|.|+.+|.+.+..+...........            ......+..++|+..+++|++.+
T Consensus       151 tG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v  211 (537)
T 3izy_P          151 TGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL  211 (537)
T ss_dssp             SSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred             CCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence            99999999877766543221111000            00112456788888899988865

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.13  E-value=0.0002  Score=62.05  Aligned_cols=104  Identities=16%  Similarity=0.099  Sum_probs=62.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC-cH--HHHHHh---cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT-HP--LMDQWL---GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~-~~--~l~~~l---~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||.        +|+ .+........+..+|+++.|+|..++..+. ..  .+..+.   .+.|+++|.||+|+.
T Consensus        55 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  125 (184)
T 2zej_A           55 DLVLNVWDF--------AGR-EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS  125 (184)
T ss_dssp             -CEEEEEEE--------CSH-HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred             ceEEEEEec--------CCC-HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence            456778874        222 333333345678899999999987653221 11  122211   367899999999998


Q ss_pred             CHHHHH----HHHHHHH-HcCCe----EEEeeCcCCC-chhhhhHHHHH
Q 016762          161 SMADRN----AWATYFA-KQGTK----VIFSNGQLGM-GTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~~~----~w~~~l~-~~g~~----vi~iSa~~g~-Gi~~L~~~l~~  199 (383)
                      ......    ...+.+. ..+..    ++++|+++|. |+.+|.+.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~  174 (184)
T 2zej_A          126 DEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIIN  174 (184)
T ss_dssp             CHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHH
Confidence            765432    1222222 23443    7889999996 88877665543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.10  E-value=0.00034  Score=60.27  Aligned_cols=79  Identities=22%  Similarity=0.201  Sum_probs=51.6

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHH----HHHHHHHHHHHcCCeEEEeeCcCCCchhhh
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMA----DRNAWATYFAKQGTKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~----~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L  193 (383)
                      ..+|+++.|+|+.... .....+..+. .+.|+++|.||+|+....    ....+.   ...+..++++|++.|.|+.++
T Consensus        84 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l  159 (188)
T 2wjg_A           84 EKPDLVVNIVDATALE-RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE---KILGVKVVPLSAAKKMGIEEL  159 (188)
T ss_dssp             HCCSEEEEEEEGGGHH-HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHH---HHHTSCEEECBGGGTBSHHHH
T ss_pred             cCCCEEEEEecchhHH-HHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHH---HHhCCCeEEEEecCCCCHHHH
Confidence            4599999999986411 0001112222 268999999999986432    223332   334678999999999999988


Q ss_pred             hHHHHHhh
Q 016762          194 SRLAKALA  201 (383)
Q Consensus       194 ~~~l~~l~  201 (383)
                      .+.+.+..
T Consensus       160 ~~~i~~~~  167 (188)
T 2wjg_A          160 KKAISIAV  167 (188)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665443

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.06  E-value=0.00056  Score=63.86  Aligned_cols=113  Identities=12%  Similarity=0.070  Sum_probs=67.4

Q ss_pred             CCcEEEEcCCCCCcCCC---chHH-HHHHHHHHHHhhhcCeE-EEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccC
Q 016762           87 DADLYYWTKSLRPVQWY---PGHI-AKTEKELKDQLKLMDVV-IEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNRED  158 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~---Pgh~-~~~~~~l~~~idr~DlI-LeV~DaR~p~~~~~~-~l~~~l~--~k~~ilVlNK~D  158 (383)
                      ..++.+||...-...-.   +... ......+..++..++.+ |.|+|+..+....+. .+...+.  +.|.++|+||+|
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D  203 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD  203 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence            36889999653211000   1111 13445556778888755 479999876555443 3444443  679999999999


Q ss_pred             CCCHHH-HHHHHHH-HHHc--C-CeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMAD-RNAWATY-FAKQ--G-TKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~-~~~w~~~-l~~~--g-~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+... ...+.+. +...  + ..++++|+++|.|+.+|.+.+.+
T Consensus       204 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          204 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             GSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             cCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            986543 2222111 0011  2 24667999999999988766554

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.04  E-value=4.5e-05  Score=79.18  Aligned_cols=87  Identities=14%  Similarity=0.107  Sum_probs=47.4

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCC-------CCCcHHHHHHh--cCCC-eEEEEEccCCCC--HHHHH----H
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQWL--GNRK-RILVLNREDMIS--MADRN----A  167 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~-------~~~~~~l~~~l--~~k~-~ilVlNK~DL~~--~~~~~----~  167 (383)
                      |||. .+.+.+...+..+|++|+|+|+..+.       .....+...++  .+.| +|+|+||+|+.+  .....    .
T Consensus       263 PGh~-~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~e  341 (592)
T 3mca_A          263 PGHR-DFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNI  341 (592)
T ss_dssp             ESSS-EEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHH
T ss_pred             CChH-HHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHH
Confidence            6652 23333334567899999999998653       22222222221  2454 889999999976  33222    2


Q ss_pred             HHHHH-HHcCC-----eEEEeeCcCCCchh
Q 016762          168 WATYF-AKQGT-----KVIFSNGQLGMGTM  191 (383)
Q Consensus       168 w~~~l-~~~g~-----~vi~iSa~~g~Gi~  191 (383)
                      ..+++ ...|.     .++++|+++|.|+.
T Consensus       342 l~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          342 VSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            22333 33343     58899999999997

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.03  E-value=0.0014  Score=61.73  Aligned_cols=113  Identities=8%  Similarity=-0.033  Sum_probs=64.1

Q ss_pred             CCcEEEEcCCCCCcCC---Cc-hHHHHHHHHHHHHhhhcCeEEEEEec-CCCCCCCc-HHHHHHhc--CCCeEEEEEccC
Q 016762           87 DADLYYWTKSLRPVQW---YP-GHIAKTEKELKDQLKLMDVVIEVRDA-RIPLSTTH-PLMDQWLG--NRKRILVLNRED  158 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw---~P-gh~~~~~~~l~~~idr~DlILeV~Da-R~p~~~~~-~~l~~~l~--~k~~ilVlNK~D  158 (383)
                      +.++++||...-....   -| +-...........+..+|++++|+|+ .......+ ..+...+.  ++|.++|+||+|
T Consensus       130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D  209 (315)
T 1jwy_B          130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD  209 (315)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred             CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence            4678899864321100   00 00123455566789999999999996 44444333 35555553  689999999999


Q ss_pred             CCCHHHHHHHHHHHHH----cCCeEEEee---CcC---CCchhhhhHHHHHhh
Q 016762          159 MISMADRNAWATYFAK----QGTKVIFSN---GQL---GMGTMKLSRLAKALA  201 (383)
Q Consensus       159 L~~~~~~~~w~~~l~~----~g~~vi~iS---a~~---g~Gi~~L~~~l~~l~  201 (383)
                      +.+...  .+.+.+..    .+..++.++   +..   +.|+.++.+.+.++.
T Consensus       210 l~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~  260 (315)
T 1jwy_B          210 LMDKGT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF  260 (315)
T ss_dssp             SSCSSC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred             cCCcch--HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence            986543  11222222    113344444   444   566666655554443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.00  E-value=0.0013  Score=63.36  Aligned_cols=102  Identities=11%  Similarity=0.038  Sum_probs=62.0

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHH
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD  164 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~  164 (383)
                      ..+.+++++|...-. +     ..   .   .+...+|+++.|+|+..+.....  +.....+.|.++|+||+|+.....
T Consensus       146 ~~~~~i~liDTpG~~-~-----~~---~---~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~~~p~ivv~NK~Dl~~~~~  211 (341)
T 2p67_A          146 AAGYDVVIVETVGVG-Q-----SE---T---EVARMVDCFISLQIAGGGDDLQG--IKKGLMEVADLIVINKDDGDNHTN  211 (341)
T ss_dssp             HTTCSEEEEEEECCT-T-----HH---H---HHHTTCSEEEEEECC------CC--CCHHHHHHCSEEEECCCCTTCHHH
T ss_pred             ccCCCEEEEeCCCcc-c-----hH---H---HHHHhCCEEEEEEeCCccHHHHH--HHHhhhcccCEEEEECCCCCChHH
Confidence            457889999963211 1     11   1   24689999999999864422111  111112468899999999987644


Q ss_pred             HHHHHHHHH----Hc-------CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          165 RNAWATYFA----KQ-------GTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       165 ~~~w~~~l~----~~-------g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ...+.+.++    ..       ...++++|+++|.|+.+|.+.+.+.
T Consensus       212 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~  258 (341)
T 2p67_A          212 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF  258 (341)
T ss_dssp             HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence            433322222    11       3467889999999999887776553

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=96.98  E-value=4.5e-05  Score=67.00  Aligned_cols=102  Identities=12%  Similarity=0.054  Sum_probs=54.8

Q ss_pred             CcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhc----CCCeEEEEEccCCCC
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG----NRKRILVLNREDMIS  161 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l~----~k~~ilVlNK~DL~~  161 (383)
                      ..+.+||..-..         .........+..+|++++|+|+.++.+.....  +..+..    +.|+++|+||+|+.+
T Consensus        82 ~~~~i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~  152 (199)
T 3l0i_B           82 IKLQIWDTAGQE---------RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT  152 (199)
T ss_dssp             EEEEEECCTTCT---------TCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred             EEEEEEECCCcH---------hHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence            467788754321         11122234678899999999998754322211  111211    578999999999975


Q ss_pred             HHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          162 MADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       162 ~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      ....  ..........+..++++|+++|.|+.++.+.+.
T Consensus       153 ~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~  191 (199)
T 3l0i_B          153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  191 (199)
T ss_dssp             -CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred             cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            4321  111122334567788899999999888755543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.93  E-value=0.00011  Score=65.38  Aligned_cols=54  Identities=26%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEe-CCcEEEEecCcc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI  272 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~  272 (383)
                      .++|+|.+|||||||+|.|.+... ......+.|||....-.+ +.++.++|+..|
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f   76 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEM   76 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHh
Confidence            589999999999999999997543 245667788887653222 345666666665

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.90  E-value=0.0035  Score=56.64  Aligned_cols=97  Identities=9%  Similarity=0.009  Sum_probs=50.1

Q ss_pred             CCcEEEEcCCCCCcCCCchH-----HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh------cCCCeEEEE
Q 016762           87 DADLYYWTKSLRPVQWYPGH-----IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL------GNRKRILVL  154 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh-----~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l------~~k~~ilVl  154 (383)
                      +..+.+||...   .+....     .+.+.+.+......+|++|+|+|+.. ....... +..+.      ..+|+++|+
T Consensus        77 ~~~i~liDTpG---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~  152 (239)
T 3lxx_A           77 ETELVVVDTPG---IFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIF  152 (239)
T ss_dssp             TEEEEEEECCS---CC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred             CceEEEEECCC---ccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEE
Confidence            45678888542   111110     12333333344566799999999863 3332222 22221      135899999


Q ss_pred             EccCCCCHHHHHH--------HHHHHHHcCCeEEEeeCcCC
Q 016762          155 NREDMISMADRNA--------WATYFAKQGTKVIFSNGQLG  187 (383)
Q Consensus       155 NK~DL~~~~~~~~--------w~~~l~~~g~~vi~iSa~~g  187 (383)
                      ||+|+........        ..+...+.|..+.+++...+
T Consensus       153 nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~  193 (239)
T 3lxx_A          153 TRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKAT  193 (239)
T ss_dssp             ECGGGC------------CHHHHHHHHHHSSSEEECCTTCC
T ss_pred             eCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCC
Confidence            9999987654432        22233455666777766543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.84  E-value=0.0027  Score=61.32  Aligned_cols=103  Identities=10%  Similarity=0.022  Sum_probs=61.5

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA  163 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~  163 (383)
                      ...+.+++++|...-. +  + .        ..+.+.+|+++.|+|+..+...  ..+...+.+.+.++|+||+|+.+..
T Consensus       163 ~~~~~~~iliDT~Gi~-~--~-~--------~~l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~  228 (349)
T 2www_A          163 EGAGYDIILIETVGVG-Q--S-E--------FAVADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIV  228 (349)
T ss_dssp             HHTTCSEEEEECCCC-----C-H--------HHHHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHH
T ss_pred             ccCCCCEEEEECCCcc-h--h-h--------hhHHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCch
Confidence            3467889999864321 1  1 0        2346789999999998754321  1122222357889999999998653


Q ss_pred             HHH----HHHHHHHH-------cCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          164 DRN----AWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       164 ~~~----~w~~~l~~-------~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      ...    .+...+..       .+..++++|+++|.|+.+|.+.+.++
T Consensus       229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~  276 (349)
T 2www_A          229 PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDF  276 (349)
T ss_dssp             HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence            322    22121111       13467899999999999988777654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.79  E-value=0.00092  Score=70.25  Aligned_cols=58  Identities=22%  Similarity=0.264  Sum_probs=38.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-----------ccCC------CCCceeEEEEEEe---CCcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----------~v~~------~pgtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      ..+|+|+|.+|+|||||+|+|++....           .+.+      ..|.|...+...+   +..+.++||||...
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            457999999999999999999843211           0111      1245554443333   34678999999853

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=96.78  E-value=0.00093  Score=64.08  Aligned_cols=56  Identities=20%  Similarity=0.177  Sum_probs=35.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--~~~i~l~DTpG~i~  274 (383)
                      ||.++|-.|||||||++.+.+..........+.|.......+  .-++.+.||+|--.
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQEr   58 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLN   58 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSS
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchh
Confidence            478999999999999998875422111112334443322222  24689999999753

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=96.76  E-value=0.002  Score=68.09  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=66.3

Q ss_pred             CcEEEEcCCCCCcCCCchHHHH--HHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHhc--CCCeEEEEEccCCCCH
Q 016762           88 ADLYYWTKSLRPVQWYPGHIAK--TEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWLG--NRKRILVLNREDMISM  162 (383)
Q Consensus        88 ~~~vi~~~~L~~~qw~Pgh~~~--~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l~--~k~~ilVlNK~DL~~~  162 (383)
                      .++.+||.        ||+...  ....+...+..+|+||+|+|+..+.+..+.+ +...+.  ++|+++|+||+|+...
T Consensus       174 ~~l~LiDT--------PGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          174 KGIEIVDS--------PGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             TTEEEEEC--------CCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred             CCeEEEEC--------CCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence            46778884        443221  2344557889999999999998776654443 223333  6789999999999754


Q ss_pred             H--------HHHH----HH----HHHHHc---------CCeEEEeeCc--------------CCCchhhhhHHHHH
Q 016762          163 A--------DRNA----WA----TYFAKQ---------GTKVIFSNGQ--------------LGMGTMKLSRLAKA  199 (383)
Q Consensus       163 ~--------~~~~----w~----~~l~~~---------g~~vi~iSa~--------------~g~Gi~~L~~~l~~  199 (383)
                      .        ....    ..    ..+...         ...++++|++              .|.|+.+|.+.+.+
T Consensus       246 ~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~  321 (695)
T 2j69_A          246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNT  321 (695)
T ss_dssp             GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHH
T ss_pred             cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHH
Confidence            3        1111    11    112111         1358899999              89999988666544

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=96.72  E-value=0.0015  Score=69.37  Aligned_cols=91  Identities=13%  Similarity=0.152  Sum_probs=61.4

Q ss_pred             HHHHHHHHHh-hhcCeEEEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccCCCCHHHH-HHHHHH-HH--HcC-CeE
Q 016762          109 KTEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMADR-NAWATY-FA--KQG-TKV  179 (383)
Q Consensus       109 ~~~~~l~~~i-dr~DlILeV~DaR~p~~~~~~-~l~~~l~--~k~~ilVlNK~DL~~~~~~-~~w~~~-l~--~~g-~~v  179 (383)
                      .+.+.+.+++ ..+|+||.|+|++.+....+. .+...+.  ++|.++|+||+|++++... ...... +.  +.| ..+
T Consensus       175 ~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~V  254 (772)
T 3zvr_A          175 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV  254 (772)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEEC
T ss_pred             HHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCce
Confidence            3444445555 688999999999987777665 5666554  6899999999999976431 111110 00  012 356


Q ss_pred             EEeeCcCCCchhhhhHHHHH
Q 016762          180 IFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       180 i~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +++|+++|.|+.+|.+.+.+
T Consensus       255 V~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          255 VNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             CCCCCEESSSSEEHHHHHHH
T ss_pred             EEecccccccchhHHHHHHH
Confidence            78999999999888766554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.71  E-value=0.00047  Score=68.72  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      +..|+++|.+||||||+.+.|..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44699999999999999999975

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.67  E-value=0.0097  Score=51.97  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             hhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHH----HHHHHHHHcC--CeEEEeeCcCCCch
Q 016762          119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN----AWATYFAKQG--TKVIFSNGQLGMGT  190 (383)
Q Consensus       119 dr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~----~w~~~l~~~g--~~vi~iSa~~g~Gi  190 (383)
                      ..+|.++.++|+..+....+.++..++  .+.|.++|.||+|+.+..+.+    .....+.+.+  ..++++|++.+.|+
T Consensus       107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~  186 (210)
T 1pui_A          107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV  186 (210)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred             hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence            578899999999876654443444443  368889999999999865432    2222233333  35678999999999


Q ss_pred             hhhhHHHHHhh
Q 016762          191 MKLSRLAKALA  201 (383)
Q Consensus       191 ~~L~~~l~~l~  201 (383)
                      .++.+.+.++.
T Consensus       187 ~~l~~~l~~~~  197 (210)
T 1pui_A          187 DKLRQKLDTWF  197 (210)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988877654

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.65  E-value=0.0034  Score=62.62  Aligned_cols=61  Identities=21%  Similarity=0.297  Sum_probs=38.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhc-----------------CCccccCCC-CCceeEEE-EE---Ee----CC--cEEEEec
Q 016762          218 VRAGIVGYPNVGKSSLINRLLK-----------------RRMCPAAPR-PGVTRVLK-WV---RF----GK--DLEFLDS  269 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~-----------------~~~~~v~~~-pgtT~~~~-~~---~~----~~--~i~l~DT  269 (383)
                      .-|+|+|.+++|||+|+|.|++                 .....+++. -.+|+.+- |.   .+    +.  .++|+||
T Consensus        68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT  147 (457)
T 4ido_A           68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT  147 (457)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred             EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence            4589999999999999997752                 122333322 22566643 21   11    22  4899999


Q ss_pred             CccccCCCC
Q 016762          270 PGIIPMRIS  278 (383)
Q Consensus       270 pG~i~~~~~  278 (383)
                      .|+.....+
T Consensus       148 EG~~d~~~~  156 (457)
T 4ido_A          148 QGTFDSQST  156 (457)
T ss_dssp             CCBTCTTCC
T ss_pred             cCCCCcccC
Confidence            999866443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.51  E-value=0.0043  Score=54.05  Aligned_cols=82  Identities=13%  Similarity=0.009  Sum_probs=52.0

Q ss_pred             HhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCC
Q 016762          117 QLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (383)
Q Consensus       117 ~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g  187 (383)
                      .+..+|.++.|+|..++.+..+..     +....  .+.|+++|.||+||.....  ......+....+..++.+|+++|
T Consensus        77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g  156 (192)
T 2cjw_A           77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ  156 (192)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence            456789999999987654332221     11111  2579999999999964321  11111112334567889999999


Q ss_pred             CchhhhhHHHH
Q 016762          188 MGTMKLSRLAK  198 (383)
Q Consensus       188 ~Gi~~L~~~l~  198 (383)
                      .|+.++.+.+.
T Consensus       157 ~~v~~lf~~l~  167 (192)
T 2cjw_A          157 HNVKELFEGIV  167 (192)
T ss_dssp             BSHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99998865543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.50  E-value=0.0028  Score=56.19  Aligned_cols=103  Identities=11%  Similarity=-0.015  Sum_probs=63.1

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA  163 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~  163 (383)
                      ...+.|++++|..-..  ..|+|..          -..+.++.|+|+..+..  .........+.|.++|+||+|+.+..
T Consensus       105 ~~~~~d~iiidt~G~~--~~~~~~~----------~~~~~~i~vvd~~~~~~--~~~~~~~~~~~~~iiv~NK~Dl~~~~  170 (221)
T 2wsm_A          105 KFSDCDLLLIENVGNL--ICPVDFD----------LGENYRVVMVSVTEGDD--VVEKHPEIFRVADLIVINKVALAEAV  170 (221)
T ss_dssp             GGTTCSEEEEEEEEBS--SGGGGCC----------CSCSEEEEEEEGGGCTT--HHHHCHHHHHTCSEEEEECGGGHHHH
T ss_pred             hcCCCCEEEEeCCCCC--CCCchhc----------cccCcEEEEEeCCCcch--hhhhhhhhhhcCCEEEEecccCCcch
Confidence            4457899999754321  1233311          13577899999876532  11111111257899999999996532


Q ss_pred             --HHHHHHHHHHHc--CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          164 --DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       164 --~~~~w~~~l~~~--g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                        ......+.++..  +..++++|+++|.|+.++.+.+.+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~  211 (221)
T 2wsm_A          171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGI  211 (221)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence              233333444433  3578899999999999887766543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.40  E-value=0.0052  Score=64.49  Aligned_cols=65  Identities=14%  Similarity=0.128  Sum_probs=45.1

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||.        ||| ..+...+...+..+|.++.|+|+..+......++...+  .+.|+++++||+|+.
T Consensus        73 ~~~~nliDT--------pG~-~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           73 GHRVFLLDA--------PGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             TEEEEEEEC--------CCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             CEEEEEEeC--------CCc-cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence            345566663        454 34556677889999999999998766544333333332  378999999999986

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=96.40  E-value=0.0023  Score=65.33  Aligned_cols=68  Identities=16%  Similarity=0.148  Sum_probs=47.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM  162 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~  162 (383)
                      .+..+.+||.        ||| ..+...+...+..+|.+|.|+|+..+.......+....  .+.|+++++||+|+...
T Consensus        80 ~~~~i~liDT--------PG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           80 HDCLVNLLDT--------PGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             TTEEEEEECC--------CCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred             CCeEEEEEEC--------CCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence            3556778884        444 33445566778999999999999876544333333333  27899999999999764

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=96.34  E-value=0.00018  Score=73.11  Aligned_cols=83  Identities=13%  Similarity=0.081  Sum_probs=53.1

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH--HHHHHHH---HH-HHcC--CeEEEeeCc
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWAT---YF-AKQG--TKVIFSNGQ  185 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~--~~~~w~~---~l-~~~g--~~vi~iSa~  185 (383)
                      ..+..+|++++|+|+.++......+.....  .+.|+++++||+|+....  .......   .+ ...+  ..++++|++
T Consensus        70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk  149 (501)
T 1zo1_I           70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK  149 (501)
T ss_dssp             SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred             HHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence            457889999999999876544333322222  378999999999996421  1110000   00 0111  468899999


Q ss_pred             CCCchhhhhHHHH
Q 016762          186 LGMGTMKLSRLAK  198 (383)
Q Consensus       186 ~g~Gi~~L~~~l~  198 (383)
                      +|.|+.+|.+.+.
T Consensus       150 tG~gI~eLle~I~  162 (501)
T 1zo1_I          150 AGTGIDELLDAIL  162 (501)
T ss_dssp             TCTTCTTHHHHTT
T ss_pred             eccCcchhhhhhh
Confidence            9999998866553

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.33  E-value=0.0042  Score=59.08  Aligned_cols=96  Identities=16%  Similarity=0.048  Sum_probs=59.5

Q ss_pred             HHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEE
Q 016762          141 MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA  220 (383)
Q Consensus       141 l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v  220 (383)
                      +++++....-.+|++|.|..+++.+    +..++.+..++.++..+...+..|...+............. ...-...-|
T Consensus        73 ler~l~~~~P~IIltrg~~~peeli----e~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~-~v~~~g~~v  147 (314)
T 1ko7_A           73 MRKLCRPETPAIIVTRDLEPPEELI----EAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGV-LVDVYGVGV  147 (314)
T ss_dssp             HHHHCCTTCCCEEECTTCCCCHHHH----HHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESE-EEEETTEEE
T ss_pred             HHHHhcCCCCEEEEeCCCCCCHHHH----HHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEE-EEEECCEEE
Confidence            5555555556678999998876543    33445578787777666666777766654421110000000 000023458


Q ss_pred             eEeecCCCChhHHHHhhhcCC
Q 016762          221 GIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       221 ~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      +|+|.+++||||+.+.|.++.
T Consensus       148 l~~G~sG~GKSt~a~~l~~~g  168 (314)
T 1ko7_A          148 LITGDSGIGKSETALELIKRG  168 (314)
T ss_dssp             EEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEeCCCCCHHHHHHHHHhcC
Confidence            999999999999999999764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.28  E-value=0.0038  Score=57.11  Aligned_cols=113  Identities=10%  Similarity=0.009  Sum_probs=62.7

Q ss_pred             CCcEEEEcCCCCCcCCCc--hHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh----c---CCCeEEEEE-c
Q 016762           87 DADLYYWTKSLRPVQWYP--GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G---NRKRILVLN-R  156 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~P--gh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l----~---~k~~ilVlN-K  156 (383)
                      +..+.+||.......+..  ..++.+.+.+...+..+|++++|+|+.. .......+..++    .   .+|.++++| |
T Consensus        70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK  148 (260)
T 2xtp_A           70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHK  148 (260)
T ss_dssp             TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred             CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcc
Confidence            456888885321111110  1122334444556788999999999874 332222222222    1   468888888 9


Q ss_pred             cCCCCHHHHHHHH---------HHHHHcCCe---E--EEeeCcCCCchhhhhHHHHHhh
Q 016762          157 EDMISMADRNAWA---------TYFAKQGTK---V--IFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       157 ~DL~~~~~~~~w~---------~~l~~~g~~---v--i~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      +|+.... ...+.         +.....+..   .  +.+|++.|.|+.++.+.+.++.
T Consensus       149 ~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~  206 (260)
T 2xtp_A          149 EDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLL  206 (260)
T ss_dssp             GGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence            9998532 22211         122333321   1  5678888888888866665543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=96.27  E-value=0.019  Score=60.56  Aligned_cols=67  Identities=16%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM  162 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~  162 (383)
                      ..++.+||.        ||| ..+..++...+..+|.+|.|+|+..+.......+....  .+.|+++++||+|+...
T Consensus        81 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           81 PHRINIIDT--------PGH-VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             ceeEEEEeC--------CCc-cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence            366777774        665 45566777889999999999999876543332222222  37899999999998653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=96.24  E-value=0.0062  Score=64.21  Aligned_cols=66  Identities=20%  Similarity=0.223  Sum_probs=47.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS  161 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~  161 (383)
                      +..+.+||.        ||| ..+.......+..+|.++.|+|+..+.......+...+  .+.|+++|+||+|+..
T Consensus        76 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           76 DHRINIIDT--------PGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TEEEEEECC--------CSS-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred             CeEEEEEEC--------cCc-cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc
Confidence            566778884        454 33455667788999999999999876654433322222  3789999999999975

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.13  E-value=0.0048  Score=59.86  Aligned_cols=79  Identities=8%  Similarity=0.081  Sum_probs=41.1

Q ss_pred             CeEEEEEec-CCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHHHHHHH----HHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          122 DVVIEVRDA-RIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       122 DlILeV~Da-R~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~~~~~w~----~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      ++++++++. +..+...+.++...+ .+.|+|+|+||+|+....++....    +.+...+..++.+|++.|.+...+..
T Consensus       147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~  226 (361)
T 2qag_A          147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKE  226 (361)
T ss_dssp             CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHH
T ss_pred             EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHH
Confidence            457777664 444444343343333 368999999999999877654432    22333466788899998887433444


Q ss_pred             HHHHh
Q 016762          196 LAKAL  200 (383)
Q Consensus       196 ~l~~l  200 (383)
                      .+..+
T Consensus       227 l~~~i  231 (361)
T 2qag_A          227 QTRLL  231 (361)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=96.08  E-value=0.006  Score=62.54  Aligned_cols=122  Identities=16%  Similarity=0.234  Sum_probs=61.0

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCcc---------------ccCC------CCCceeEE---EEEEeCCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMC---------------PAAP------RPGVTRVL---KWVRFGKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v~~------~pgtT~~~---~~~~~~~~i~l~DTpG~i~  274 (383)
                      +|+|+|...+|||||.-+|+-...+               .+.+      .-|.|...   ...+-+..+-|+||||-+.
T Consensus        33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD  112 (548)
T 3vqt_A           33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD  112 (548)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred             eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence            6999999999999999999621100               1111      22444332   2222255688999999986


Q ss_pred             CCCCcHHHHHHHHHhccc--ccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHh
Q 016762          275 MRISDQAAAIKLAICDDI--GERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL  345 (383)
Q Consensus       275 ~~~~~~~~~~~la~~~~i--~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~~~a~~~  345 (383)
                      ... +.+.+++ +.-+++  -+.+-........++..+.+.   ....+...+|+|-...+..+.++.+..++
T Consensus       113 F~~-Ev~raL~-~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr~~ad~~~~~~~i~~~l  180 (548)
T 3vqt_A          113 FSE-DTYRVLT-AVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDREALHPLDVMADIEQHL  180 (548)
T ss_dssp             CSH-HHHHHHH-SCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTSCCCCHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHH-hcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccchhcchhHhhhhhhhhc
Confidence            432 3334443 111221  112222233334444544433   12223345667655556666666665443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.02  E-value=0.013  Score=51.63  Aligned_cols=72  Identities=10%  Similarity=0.127  Sum_probs=36.7

Q ss_pred             hhhcCeEEEEEecC-CCCCCCc--HHHHHHh--------cCCCeEEEEEccCCCCHHHHHHHHHHH--------HHcCCe
Q 016762          118 LKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAWATYF--------AKQGTK  178 (383)
Q Consensus       118 idr~DlILeV~DaR-~p~~~~~--~~l~~~l--------~~k~~ilVlNK~DL~~~~~~~~w~~~l--------~~~g~~  178 (383)
                      +..+|.+++|+|+. .+.+...  ..+..++        .+.|+++|+||+|+.+......+.+.+        ...+..
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            34599999999998 4433322  1222222        368899999999998654333222211        112334


Q ss_pred             EEEeeCcCCCc
Q 016762          179 VIFSNGQLGMG  189 (383)
Q Consensus       179 vi~iSa~~g~G  189 (383)
                      ++.+|++.|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            55667766643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.99  E-value=0.0069  Score=62.90  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +.++|||-+|+|||||+|+|+|-
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSC
T ss_pred             CeEEEECCCCChHHHHHHHHhCC
Confidence            35999999999999999999975

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.92  E-value=0.0071  Score=59.47  Aligned_cols=47  Identities=19%  Similarity=0.155  Sum_probs=35.5

Q ss_pred             CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhh
Q 016762          147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       147 ~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L  193 (383)
                      .+|.++|+||+|+........+.+.+...+..++++|++.+.|+.+|
T Consensus       214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L  260 (397)
T 1wxq_A          214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKA  260 (397)
T ss_dssp             HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSC
T ss_pred             CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHH
Confidence            58999999999998554455555555444668999999998887665

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.87  E-value=0.0028  Score=54.86  Aligned_cols=38  Identities=29%  Similarity=0.351  Sum_probs=26.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEE
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLK  256 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~  256 (383)
                      .++|+|.+++|||||+|.|.+... ........+|+...
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~   45 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK   45 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCC
Confidence            489999999999999999987432 12234555666543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=95.86  E-value=0.0099  Score=62.67  Aligned_cols=67  Identities=19%  Similarity=0.265  Sum_probs=46.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM  162 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~  162 (383)
                      +..+.+||.        ||| ..+..+....+..+|.+|.|+|+..+.......+...+  .+.|+++|+||+|+...
T Consensus        74 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           74 GHRVNIIDT--------PGH-VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             TEEEEEECC--------CCC-SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             CeeEEEEEC--------cCC-cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence            566778884        333 22344556778889999999999876554443333222  37899999999999753

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=95.79  E-value=0.0038  Score=60.18  Aligned_cols=113  Identities=13%  Similarity=0.086  Sum_probs=64.4

Q ss_pred             CCcEEEEcCCCCCcCCC---chHH-HHHHHHHHHHh-hhcCeEEEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccC
Q 016762           87 DADLYYWTKSLRPVQWY---PGHI-AKTEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNRED  158 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~---Pgh~-~~~~~~l~~~i-dr~DlILeV~DaR~p~~~~~~-~l~~~l~--~k~~ilVlNK~D  158 (383)
                      ..++.+||...-...-.   |.+. ......+..++ ...++||.|+|+.......+. .+.+.+.  +.|.++|+||+|
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D  208 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD  208 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence            46899999654211000   2222 23444555666 445678888888765444433 2444443  679999999999


Q ss_pred             CCCHHH-HHHHHHH-HH--HcC-CeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMAD-RNAWATY-FA--KQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~-~~~w~~~-l~--~~g-~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+... ...+.+. ..  +.| ..++.+|+++|.|+.+|.+.+.+
T Consensus       209 l~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          209 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             GSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             ccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            986532 1222110 00  012 24567899999998888666544

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.73  E-value=0.017  Score=57.57  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhh
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      .+..|+++|.+||||||+++.|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHH
Confidence            45679999999999999999997

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.68  E-value=0.016  Score=55.51  Aligned_cols=105  Identities=11%  Similarity=-0.013  Sum_probs=61.9

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCC-
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS-  161 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~-  161 (383)
                      ++..+.+++++|...-.-   +.         ..+.+.+|+++.|+|+..+...  ..+...+.+.+.++++||+|+.+ 
T Consensus       143 ~~~~~~~~iliDT~Gi~~---~~---------~~v~~~~d~vl~v~d~~~~~~~--~~i~~~i~~~~~ivvlNK~Dl~~~  208 (337)
T 2qm8_A          143 CEAAGFDVILVETVGVGQ---SE---------TAVADLTDFFLVLMLPGAGDEL--QGIKKGIFELADMIAVNKADDGDG  208 (337)
T ss_dssp             HHHTTCCEEEEEECSSSS---CH---------HHHHTTSSEEEEEECSCC--------CCTTHHHHCSEEEEECCSTTCC
T ss_pred             HhcCCCCEEEEECCCCCc---ch---------hhHHhhCCEEEEEEcCCCcccH--HHHHHHHhccccEEEEEchhccCc
Confidence            344578888888654321   11         1345899999999997533210  00100111246688889999865 


Q ss_pred             HHHHHHHHHHHHH-----c------CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          162 MADRNAWATYFAK-----Q------GTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       162 ~~~~~~w~~~l~~-----~------g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      ..........+..     .      ..+++++|+.++.|+.+|.+.+.++.
T Consensus       209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          209 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3322222222321     1      35688999999999999988776653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=95.67  E-value=0.015  Score=59.61  Aligned_cols=58  Identities=17%  Similarity=0.169  Sum_probs=44.8

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS  161 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~  161 (383)
                      -||| ..+..++.+.+.-+|-.+.|+||..+....-..+.+..  .+.|+++++||+|...
T Consensus       107 TPGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          107 TPGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred             CCCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh
Confidence            3888 78888999999999999999999876544333333322  4899999999999853

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.56  E-value=0.024  Score=50.10  Aligned_cols=77  Identities=13%  Similarity=0.050  Sum_probs=46.6

Q ss_pred             cCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH--HHHHHHHHHHHc--CCeEEEeeCcCCCchhhhhHH
Q 016762          121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       121 ~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~--~~~~w~~~l~~~--g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      .+.+++|+|+..+....... ... ..+|.++|+||+|+.+..  ......+.+...  +..++++|+++|.|+.++.+.
T Consensus       140 ~~~~~~v~~~~~~~~~~~~~-~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  217 (226)
T 2hf9_A          140 THKRIVVISTTEGDDTIEKH-PGI-MKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEF  217 (226)
T ss_dssp             CSEEEEEEEGGGCTTTTTTC-HHH-HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHH
T ss_pred             cCcEEEEEecCcchhhHhhh-hhH-hhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHH
Confidence            34566777764322211111 111 257889999999996542  223333334333  467889999999999988766


Q ss_pred             HHH
Q 016762          197 AKA  199 (383)
Q Consensus       197 l~~  199 (383)
                      +.+
T Consensus       218 l~~  220 (226)
T 2hf9_A          218 IEK  220 (226)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.53  E-value=0.0062  Score=52.41  Aligned_cols=54  Identities=15%  Similarity=0.206  Sum_probs=34.0

Q ss_pred             HHHhhhcCeEEEEEecC-CCCCCCc--HHHHHHh--------cCCCeEEEEEccCCCCHHHHHHH
Q 016762          115 KDQLKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAW  168 (383)
Q Consensus       115 ~~~idr~DlILeV~DaR-~p~~~~~--~~l~~~l--------~~k~~ilVlNK~DL~~~~~~~~w  168 (383)
                      ...+..+|++++|+|+. .+.+...  ..+..++        .+.|+++|+||+|+.+.......
T Consensus       113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~  177 (193)
T 2ged_A          113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKI  177 (193)
T ss_dssp             HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHH
T ss_pred             HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHH
Confidence            34556799999999987 3222111  1122222        26899999999999865544443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.47  E-value=0.021  Score=55.04  Aligned_cols=108  Identities=8%  Similarity=-0.041  Sum_probs=62.9

Q ss_pred             CCcEEEEcCCCCCcC----CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc--CCCeEEEEEccC
Q 016762           87 DADLYYWTKSLRPVQ----WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG--NRKRILVLNRED  158 (383)
Q Consensus        87 ~~~~vi~~~~L~~~q----w~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~--~k~~ilVlNK~D  158 (383)
                      ..++.+||...-...    ...+-.......+..++.++|+|++++|+........  ..+...+.  +++.++|+||+|
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D  214 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID  214 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence            567889986432110    0112223344555678999999999997643222212  23333332  578999999999


Q ss_pred             CCCHHHHHHHHHHHH----HcCCeEEEeeCcCCCchhhhhHH
Q 016762          159 MISMADRNAWATYFA----KQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       159 L~~~~~~~~w~~~l~----~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +++....  +.+.+.    ..+.+++.++++.+.++.+....
T Consensus       215 l~~~~~~--~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          215 LMDKGTD--AVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             GCCTTCC--SHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             cCCCccc--HHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            9865421  122222    23456777888888777655433

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.23  E-value=0.008  Score=52.21  Aligned_cols=23  Identities=35%  Similarity=0.702  Sum_probs=20.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      +++|+|-+++|||||++.|.+.-
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998753

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=95.23  E-value=0.0022  Score=62.11  Aligned_cols=103  Identities=14%  Similarity=0.103  Sum_probs=62.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC---------CCc---HHHHHHh-----cCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---------TTH---PLMDQWL-----GNRK  149 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~---------~~~---~~l~~~l-----~~k~  149 (383)
                      +..+.+||...+         ++..+......+.++.||+|+|..+...         ...   ..+..+.     .+.|
T Consensus       192 ~~~l~iwDt~GQ---------e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p  262 (353)
T 1cip_A          192 DLHFKMFDVGGQ---------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS  262 (353)
T ss_dssp             TEEEEEEEECCS---------GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             CeeEEEEeCCCc---------hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence            566788885443         3333444457899999999999876321         011   1122222     2578


Q ss_pred             eEEEEEccCCCC--------------------HHHHHHHHH-HHH-------HcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          150 RILVLNREDMIS--------------------MADRNAWAT-YFA-------KQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       150 ~ilVlNK~DL~~--------------------~~~~~~w~~-~l~-------~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +++++||+||..                    .++...|.. .|.       ..+..++++||+.+.|+.++-+.+.
T Consensus       263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~  339 (353)
T 1cip_A          263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT  339 (353)
T ss_dssp             EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence            999999999842                    223333332 111       1234567899999999887755443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.19  E-value=0.014  Score=51.46  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=21.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ....|+|+|-+++|||||++.|.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999999864

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=95.19  E-value=0.0095  Score=62.20  Aligned_cols=57  Identities=21%  Similarity=0.226  Sum_probs=45.2

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI  160 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~  160 (383)
                      -||| ..+..++...+.-+|..+.|+||..+....-..+.+..  .+.|+++++||+|..
T Consensus        74 TPGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~  132 (638)
T 3j25_A           74 TPGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN  132 (638)
T ss_dssp             CCCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred             CCCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence            3898 77888899999999999999999987665444433332  378999999999975

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.11  E-value=0.013  Score=50.64  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.8

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..++|+|.+++|||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.08  E-value=0.0087  Score=52.68  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-+++|||||+|.|.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999863

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=95.07  E-value=0.032  Score=50.06  Aligned_cols=87  Identities=9%  Similarity=-0.062  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhhhcCeEEEEEecCCCCCC-CcHHH---HHHh------cCCCeEEEEEcc-CCCCHHHHHHHHHHHH--
Q 016762          107 IAKTEKELKDQLKLMDVVIEVRDARIPLST-THPLM---DQWL------GNRKRILVLNRE-DMISMADRNAWATYFA--  173 (383)
Q Consensus       107 ~~~~~~~l~~~idr~DlILeV~DaR~p~~~-~~~~l---~~~l------~~k~~ilVlNK~-DL~~~~~~~~w~~~l~--  173 (383)
                      +.+++...+.+.+.+|.||+|+|+.+.... ...++   ..++      .+.|+++..||. |+...-...+..+.+.  
T Consensus       112 Q~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~  191 (227)
T 3l82_B          112 RYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLN  191 (227)
T ss_dssp             -----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGG
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCc
Confidence            355555555789999999999999765321 23344   2222      245888999996 6642111122222221  


Q ss_pred             --HcCCeEEEeeCcCCCchhhh
Q 016762          174 --KQGTKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       174 --~~g~~vi~iSa~~g~Gi~~L  193 (383)
                        +....+..+||.+|.|+.+-
T Consensus       192 ~l~R~W~Iq~csA~TGeGL~EG  213 (227)
T 3l82_B          192 LLNHPWLVQDTEAETLTGFLNG  213 (227)
T ss_dssp             GGCSCEEEEEEETTTCTTHHHH
T ss_pred             CCCCCEEEEEeECCCCcCHHHH
Confidence              11245778999999997654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.02  E-value=0.012  Score=52.16  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.2

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      ..++|+|.++||||||++.|.+..
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358999999999999999998753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=94.94  E-value=0.039  Score=56.52  Aligned_cols=62  Identities=21%  Similarity=0.112  Sum_probs=42.4

Q ss_pred             HHHHHHHhhhcCeEEEEEecCCC-CCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHH
Q 016762          111 EKELKDQLKLMDVVIEVRDARIP-LSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF  172 (383)
Q Consensus       111 ~~~l~~~idr~DlILeV~DaR~p-~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l  172 (383)
                      .+.....+.++|+||+|+|+..+ .......+...+.  +.|+++|+||+|+++.+++......+
T Consensus       179 ~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l  243 (550)
T 2qpt_A          179 PAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL  243 (550)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence            34555678999999999999764 2222233333333  46899999999999887665544433

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.84  E-value=0.0089  Score=52.04  Aligned_cols=85  Identities=12%  Similarity=0.012  Sum_probs=54.5

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCC
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~-~-l~~~l----~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g  187 (383)
                      .....+|.++.|+|...+.+..+. . +..+.    .+.|+++|+||+||.....  .........+.+..++.+|++.+
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~  152 (199)
T 2f9l_A           73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS  152 (199)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            456789999999998765432221 1 11111    2578999999999964321  11112233445677788999999


Q ss_pred             CchhhhhHHHHHh
Q 016762          188 MGTMKLSRLAKAL  200 (383)
Q Consensus       188 ~Gi~~L~~~l~~l  200 (383)
                      .|+.++.+.+.+.
T Consensus       153 ~~i~~l~~~l~~~  165 (199)
T 2f9l_A          153 TNVEEAFKNILTE  165 (199)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999887666544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=94.69  E-value=0.0046  Score=60.05  Aligned_cols=104  Identities=13%  Similarity=0.112  Sum_probs=57.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC------CcH------HHHHHh-----cCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST------THP------LMDQWL-----GNRK  149 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~------~~~------~l~~~l-----~~k~  149 (383)
                      +..+.+||...+         +...+......+.++.||+|+|..+....      .+.      .+..+.     .+.|
T Consensus       200 ~~~l~i~Dt~Gq---------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p  270 (362)
T 1zcb_A          200 NVPFKMVDVGGQ---------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS  270 (362)
T ss_dssp             TEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             CeEEEEEeccch---------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence            456677774322         44444444668999999999998752100      111      122222     2578


Q ss_pred             eEEEEEccCCCC---------------------HHHHHHHH-HHHH-------HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          150 RILVLNREDMIS---------------------MADRNAWA-TYFA-------KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       150 ~ilVlNK~DL~~---------------------~~~~~~w~-~~l~-------~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +|+++||+||..                     .++...|. ..|.       ..+..++++||+.+.|+..+-+.+.+
T Consensus       271 iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~  349 (362)
T 1zcb_A          271 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  349 (362)
T ss_dssp             EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence            999999999852                     12222222 1121       22356778999999999877554443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.67  E-value=0.013  Score=50.80  Aligned_cols=22  Identities=18%  Similarity=0.490  Sum_probs=20.0

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|.+|+|||||+|.|.+.
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            4899999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.65  E-value=0.013  Score=51.69  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-+++|||||+|.|.|-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999874

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.56  E-value=0.017  Score=50.31  Aligned_cols=22  Identities=32%  Similarity=0.320  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-+++|||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4899999999999999999874

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.48  E-value=0.011  Score=51.94  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..|+|+|.+++|||||.+.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999854

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=94.42  E-value=0.024  Score=54.23  Aligned_cols=71  Identities=11%  Similarity=0.038  Sum_probs=44.0

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEEEccCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDM  159 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-------~~k~~ilVlNK~DL  159 (383)
                      .+.+-+||...+..-.-|-     . ....+.+.++.+++|+|..+........+..++       .+.|++++.||+||
T Consensus        45 ~v~LqIWDTAGQErf~~~~-----l-~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL  118 (331)
T 3r7w_B           45 LIDLAVMELPGQLNYFEPS-----Y-DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG  118 (331)
T ss_dssp             SSCEEEEECCSCSSSCCCS-----H-HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCS
T ss_pred             EEEEEEEECCCchhccchh-----h-hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECccc
Confidence            4789999965542110000     0 223568999999999999876111111222221       36789999999999


Q ss_pred             CCHH
Q 016762          160 ISMA  163 (383)
Q Consensus       160 ~~~~  163 (383)
                      .+.+
T Consensus       119 ~~~~  122 (331)
T 3r7w_B          119 LSED  122 (331)
T ss_dssp             SCSH
T ss_pred             Cchh
Confidence            8753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.42  E-value=0.0091  Score=51.63  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=20.0

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|||.+|+|||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999863

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.41  E-value=0.016  Score=51.79  Aligned_cols=22  Identities=41%  Similarity=0.587  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-+++|||||+|.|.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999974

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.30  E-value=0.023  Score=49.93  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +..|+|+|-+++|||||++.|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.24  E-value=0.018  Score=51.79  Aligned_cols=23  Identities=39%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      .++|+|-++||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999999754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=94.23  E-value=0.024  Score=54.53  Aligned_cols=67  Identities=13%  Similarity=0.108  Sum_probs=43.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCC------CCCCcH------HHHHHh-----cCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP------LSTTHP------LMDQWL-----GNR  148 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p------~~~~~~------~l~~~l-----~~k  148 (383)
                      .+..+.+||...+         ++..+......+.++.||+|+|..+-      ....+.      .+...+     .+.
T Consensus       159 ~~v~l~iwDtaGQ---------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~  229 (340)
T 4fid_A          159 KDIPFHLIDVGGQ---------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA  229 (340)
T ss_dssp             SSCEEEEEECCSC---------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred             eeeeeccccCCCc---------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence            4577788885433         56566666778999999999998621      001111      122222     357


Q ss_pred             CeEEEEEccCCCC
Q 016762          149 KRILVLNREDMIS  161 (383)
Q Consensus       149 ~~ilVlNK~DL~~  161 (383)
                      |+++++||+||..
T Consensus       230 piiLv~NK~DL~~  242 (340)
T 4fid_A          230 VKLIFLNKMDLFE  242 (340)
T ss_dssp             EEEEEEECHHHHH
T ss_pred             eEEEEEECchhhh
Confidence            8999999999854

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.14  E-value=0.02  Score=54.16  Aligned_cols=21  Identities=43%  Similarity=0.645  Sum_probs=19.8

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .++|+|.+|+|||||++.|.|
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            599999999999999999985

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.14  E-value=0.024  Score=51.07  Aligned_cols=22  Identities=32%  Similarity=0.311  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999974

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.09  E-value=0.025  Score=49.27  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..|+|+|.+++||||+++.|.+.
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.05  E-value=0.024  Score=51.43  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4899999999999999999974

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.01  E-value=0.022  Score=48.20  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=20.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .|+|+|.+++||||+.+.|.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=94.00  E-value=0.023  Score=48.59  Aligned_cols=20  Identities=20%  Similarity=0.390  Sum_probs=18.3

Q ss_pred             EEeEeecCCCChhHHHHhhh
Q 016762          219 RAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~  238 (383)
                      .++++|.+++|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            48999999999999999865

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=93.98  E-value=0.012  Score=61.47  Aligned_cols=57  Identities=19%  Similarity=0.346  Sum_probs=36.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCcc-----c------cCCCC------CceeEEEEEE---eCCcEEEEecCccccC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMC-----P------AAPRP------GVTRVLKWVR---FGKDLEFLDSPGIIPM  275 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~-----~------v~~~p------gtT~~~~~~~---~~~~i~l~DTpG~i~~  275 (383)
                      +|+|+|...+|||||..+|+-....     .      +.|..      |.|.......   -+..+.|+||||-...
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence            5899999999999999999621110     1      11111      4454432222   2556889999998753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=93.98  E-value=0.023  Score=49.08  Aligned_cols=21  Identities=38%  Similarity=0.346  Sum_probs=19.3

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .++++|.+++|||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            479999999999999999985

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=93.95  E-value=0.031  Score=53.47  Aligned_cols=104  Identities=11%  Similarity=0.050  Sum_probs=61.4

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecC-------CCCCCCc-----HHHHHHh-----cCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDAR-------IPLSTTH-----PLMDQWL-----GNR  148 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR-------~p~~~~~-----~~l~~~l-----~~k  148 (383)
                      .++.+-+||...+         ++..+......+.++.||+|+|..       +......     ..+..+.     .+.
T Consensus       165 ~~v~l~iwDtgGQ---------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~  235 (327)
T 3ohm_A          165 QSVIFRMVDVGGQ---------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS  235 (327)
T ss_dssp             TTEEEEEEEECCS---------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred             eceeeEEEEcCCc---------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence            4567778885333         555555557789999999999764       2111111     1122222     257


Q ss_pred             CeEEEEEccCCCCHH------------------HHHHHHHHH----H------HcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          149 KRILVLNREDMISMA------------------DRNAWATYF----A------KQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       149 ~~ilVlNK~DL~~~~------------------~~~~w~~~l----~------~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      |+++++||+||....                  ..+.-.+++    .      ..+....++||+.+.+++.+-..+.
T Consensus       236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~  313 (327)
T 3ohm_A          236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK  313 (327)
T ss_dssp             EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence            899999999985422                  112222222    1      1234466789999988877654443

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=93.91  E-value=0.027  Score=49.27  Aligned_cols=23  Identities=13%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..|+|+|.+++|||||++.|.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.86  E-value=0.027  Score=51.11  Aligned_cols=22  Identities=41%  Similarity=0.572  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|..++|||||++.|.|-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999974

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.82  E-value=0.028  Score=51.19  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=20.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|..++|||||++.|.|-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999975

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=93.79  E-value=0.022  Score=61.30  Aligned_cols=65  Identities=20%  Similarity=0.213  Sum_probs=45.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH-HHH-hcCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQW-LGNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l-~~~-l~~k~~ilVlNK~DL~  160 (383)
                      +..+.+||.        ||| .++..+....+..+|.+|.|+|+..+.......+ ... ..+.|+++++||+|+.
T Consensus        97 ~~~i~liDT--------PG~-~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDS--------PGH-VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECC--------CCC-CSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             CceEEEEEC--------cCc-hhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            455677774        444 3344556678899999999999988765444332 222 2378999999999986

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=93.73  E-value=0.0099  Score=58.52  Aligned_cols=65  Identities=12%  Similarity=0.133  Sum_probs=40.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCC------CCCCc--HH----HHHHh-----cCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP------LSTTH--PL----MDQWL-----GNRK  149 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p------~~~~~--~~----l~~~l-----~~k~  149 (383)
                      +..+-+||...+         ++.........+.++.||+|+|..+-      ..+.+  .+    +..+.     .+.|
T Consensus       216 ~v~l~iwDtaGQ---------e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p  286 (402)
T 1azs_C          216 KVNFHMFDVGGQ---------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS  286 (402)
T ss_dssp             TEEEEEEEECCS---------GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC
T ss_pred             Cccceecccchh---------hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe
Confidence            456777875443         34344444678999999999998651      00011  11    22222     2468


Q ss_pred             eEEEEEccCCC
Q 016762          150 RILVLNREDMI  160 (383)
Q Consensus       150 ~ilVlNK~DL~  160 (383)
                      +++++||+||.
T Consensus       287 iiLvgNK~DL~  297 (402)
T 1azs_C          287 VILFLNKQDLL  297 (402)
T ss_dssp             EEEEEECHHHH
T ss_pred             EEEEEEChhhh
Confidence            99999999984

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.72  E-value=0.03  Score=51.49  Aligned_cols=22  Identities=36%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||+|.|.|-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999974

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.70  E-value=0.03  Score=51.19  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999974

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.67  E-value=0.031  Score=50.92  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999974

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.65  E-value=0.029  Score=51.72  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .++|+|-+++|||||++.|.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999986

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.63  E-value=0.036  Score=48.43  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=21.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +..|+|+|.+++|||||.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999864

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=93.63  E-value=0.038  Score=46.90  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=20.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      ..|+|+|.+++||||+.+.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999999975

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.62  E-value=0.032  Score=50.35  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|..++|||||++.|.|-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999974

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.62  E-value=0.031  Score=51.71  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4899999999999999999974

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=93.62  E-value=0.034  Score=50.27  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=20.2

Q ss_pred             ceEEeEeecCCCChhHHHHhhh
Q 016762          217 AVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      +..|+|+|.+++|||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999999998

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=93.60  E-value=0.069  Score=50.03  Aligned_cols=24  Identities=17%  Similarity=0.027  Sum_probs=21.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .+..|+|+|-+++|||||.+.|.+
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999975

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.60  E-value=0.03  Score=50.10  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999974

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.59  E-value=0.03  Score=49.91  Aligned_cols=29  Identities=14%  Similarity=-0.050  Sum_probs=23.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPR  248 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~  248 (383)
                      .++|+|..++|||||++.|.|- ....+..
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            4899999999999999999986 4333433

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.58  E-value=0.03  Score=51.68  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999974

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=93.57  E-value=0.098  Score=49.12  Aligned_cols=48  Identities=8%  Similarity=0.118  Sum_probs=27.9

Q ss_pred             CCCeEEEEEccCCCCHHHHH----HHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          147 NRKRILVLNREDMISMADRN----AWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       147 ~k~~ilVlNK~DL~~~~~~~----~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +.++++|+||+|+....++.    ...+.....+..++.+|++.+ +++++..
T Consensus       155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~  206 (301)
T 2qnr_A          155 KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFK  206 (301)
T ss_dssp             TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CH
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHH
Confidence            46899999999999765432    233445566778888999999 8877643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.52  E-value=0.033  Score=51.84  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999974

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.52  E-value=0.028  Score=49.28  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++++|.+++|||||++.|.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4899999999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=93.51  E-value=0.075  Score=46.50  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=21.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .+..|+|+|.+++|||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999975

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=93.45  E-value=0.036  Score=48.36  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .|+|+|.+++||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999999986

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.44  E-value=0.035  Score=51.13  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999974

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.43  E-value=0.036  Score=50.82  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      .++|+|-.++|||||++.|.|-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.41  E-value=0.036  Score=50.36  Aligned_cols=22  Identities=14%  Similarity=0.295  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999974

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.39  E-value=0.036  Score=51.23  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4899999999999999999974

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.38  E-value=0.036  Score=49.05  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=20.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..|+|+|.+++||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999853

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.37  E-value=0.037  Score=50.63  Aligned_cols=22  Identities=27%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999984

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.30  E-value=0.038  Score=51.11  Aligned_cols=22  Identities=36%  Similarity=0.409  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999984

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=93.29  E-value=0.062  Score=56.69  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=19.4

Q ss_pred             eEEeEeecCCCChhHHHHhhh
Q 016762          218 VRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      .+|+|+|...+|||||.-+|+
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL   34 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVL   34 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHH
Confidence            369999999999999999986

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.28  E-value=0.039  Score=50.79  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999974

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.27  E-value=0.039  Score=51.20  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999974

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=93.25  E-value=0.025  Score=53.53  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|||-+++|||||++.|.|-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5999999999999999999974

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.25  E-value=0.039  Score=51.45  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4899999999999999999974

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.24  E-value=0.053  Score=47.48  Aligned_cols=24  Identities=38%  Similarity=0.540  Sum_probs=21.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ...|+|+|.+++||||+.+.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            456999999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=93.24  E-value=0.031  Score=48.95  Aligned_cols=36  Identities=25%  Similarity=0.225  Sum_probs=26.3

Q ss_pred             EeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEE
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL  255 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~  255 (383)
                      |.|+|-++|||+||++.|..+..- ..-..+.|||..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p   40 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP   40 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence            689999999999999999854321 223456677764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=93.23  E-value=0.046  Score=46.26  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      ..|.++|.|++||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999985

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=93.23  E-value=0.052  Score=46.58  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             ceEEeEeecCCCChhHHHHhhhc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      +..|.++|.|++||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999974

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=93.22  E-value=0.087  Score=55.57  Aligned_cols=58  Identities=19%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH-Hh-cCCCeEEEEEccCCCCH
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISM  162 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~-~l-~~k~~ilVlNK~DL~~~  162 (383)
                      ||| .++..++...+.-+|-.+.|+|+-.+....-..+.+ +. .+.|+++++||+|....
T Consensus        93 PGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           93 PGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred             CCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence            888 778899999999999999999998766543333332 22 38999999999998643

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=93.21  E-value=0.035  Score=46.61  Aligned_cols=22  Identities=23%  Similarity=0.078  Sum_probs=19.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .|+|+|.+++||||+.+.|..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.19  E-value=0.041  Score=50.87  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4899999999999999999974

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=93.18  E-value=0.042  Score=45.95  Aligned_cols=19  Identities=37%  Similarity=0.461  Sum_probs=18.1

Q ss_pred             EEeEeecCCCChhHHHHhh
Q 016762          219 RAGIVGYPNVGKSSLINRL  237 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L  237 (383)
                      .|+|+|.|++||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999999

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=93.14  E-value=0.042  Score=50.44  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999975

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=93.10  E-value=0.018  Score=55.72  Aligned_cols=65  Identities=12%  Similarity=0.056  Sum_probs=38.8

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCC-------CCCCCc-HH----HHHHh-----cCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI-------PLSTTH-PL----MDQWL-----GNRK  149 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~-------p~~~~~-~~----l~~~l-----~~k~  149 (383)
                      ...+-+||...+         ++..+......+.++.+|+|+|...       ...... .+    +..+.     .+.|
T Consensus       182 ~v~l~iwDtaGQ---------e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p  252 (354)
T 2xtz_A          182 GEVYRLFDVGGQ---------RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS  252 (354)
T ss_dssp             --EEEEEEECCS---------TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred             ceeeEEEECCCc---------hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence            466788885444         3333333456899999999999751       111111 11    22222     2578


Q ss_pred             eEEEEEccCCC
Q 016762          150 RILVLNREDMI  160 (383)
Q Consensus       150 ~ilVlNK~DL~  160 (383)
                      +++++||+||.
T Consensus       253 iiLvgNK~DL~  263 (354)
T 2xtz_A          253 FMLFLNKFDIF  263 (354)
T ss_dssp             EEEEEECHHHH
T ss_pred             EEEEEECcchh
Confidence            99999999984

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=93.07  E-value=0.042  Score=52.45  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-+++|||||+|.|.+.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999974

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=92.98  E-value=0.069  Score=52.98  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhh
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      .+..|+++|.+||||||+...|.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35578999999999999999997

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=92.95  E-value=0.045  Score=47.71  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..|+|+|.+++||||+.+.|.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=92.95  E-value=0.032  Score=49.96  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=15.1

Q ss_pred             EEeEeecCCCChhHHHHhhh-cC
Q 016762          219 RAGIVGYPNVGKSSLINRLL-KR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~-~~  240 (383)
                      .++|+|-+++|||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999999 64

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=92.94  E-value=0.05  Score=51.56  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=22.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .+..|+|+|-+++|||||++.|.+-
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            4556999999999999999999864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=92.93  E-value=0.042  Score=53.30  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|..++|||||++.|.|-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            4899999999999999999974

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.90  E-value=0.052  Score=47.43  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=19.6

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .|+|+|.+++||||+.+.|.+
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=92.83  E-value=0.12  Score=44.61  Aligned_cols=83  Identities=13%  Similarity=0.039  Sum_probs=52.0

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCC
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g  187 (383)
                      .....++.++.|+|..+..+..+..  +..+.    .+.++++++||+||.....  .........+.+..++.+|++++
T Consensus        97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~  176 (191)
T 1oix_A           97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDS  176 (191)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            4567789999999986543322211  11111    2568999999999864221  11112233445667778999999


Q ss_pred             CchhhhhHHHH
Q 016762          188 MGTMKLSRLAK  198 (383)
Q Consensus       188 ~Gi~~L~~~l~  198 (383)
                      .|+.++.+.+.
T Consensus       177 ~~v~~l~~~l~  187 (191)
T 1oix_A          177 TNVEAAFQTIL  187 (191)
T ss_dssp             TTHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99988866654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.77  E-value=0.047  Score=52.75  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-+++|||||+|+|.+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4899999999999999999974

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=92.69  E-value=0.049  Score=48.03  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=19.8

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .++|+|.+++|||||++.|.+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999986

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=92.68  E-value=0.071  Score=45.79  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=21.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +..|.++|.+++||||+.+.|.+.
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            456899999999999999999753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.65  E-value=0.054  Score=50.05  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999974

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=92.59  E-value=0.054  Score=46.83  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .|+|+|.+++||||+.+.|.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            4899999999999999999853

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=92.53  E-value=0.07  Score=45.31  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      .++++|-.++|||||++.|.+.-
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999999753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=92.52  E-value=0.065  Score=45.43  Aligned_cols=22  Identities=23%  Similarity=0.222  Sum_probs=19.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .|.++|.|++||||+.+.|..+
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999999853

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=92.46  E-value=0.061  Score=46.35  Aligned_cols=21  Identities=29%  Similarity=0.596  Sum_probs=19.4

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .++|+|++|+|||||++.|..
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=92.46  E-value=0.061  Score=50.43  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999999974

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=92.43  E-value=0.065  Score=45.78  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      +..|+++|.|++||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999999974

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=92.42  E-value=0.063  Score=46.84  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .|+|+|.|++||||+.+.|.+
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=92.32  E-value=0.072  Score=45.49  Aligned_cols=21  Identities=29%  Similarity=0.563  Sum_probs=19.4

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .|.|+|.|++||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999975

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=92.31  E-value=0.071  Score=48.21  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +..|+|+|-.++|||||++.|.+.
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=92.24  E-value=0.074  Score=46.10  Aligned_cols=24  Identities=13%  Similarity=0.195  Sum_probs=21.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +..|+|+|.+++||||+.+.|..+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            346999999999999999999854

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.23  E-value=0.14  Score=50.64  Aligned_cols=73  Identities=10%  Similarity=0.005  Sum_probs=37.6

Q ss_pred             cCeEEEEEecC-CCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHHHHH----HHHHHHHcCCeEEEeeCcCCCchhhh
Q 016762          121 MDVVIEVRDAR-IPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       121 ~DlILeV~DaR-~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~~~~~----w~~~l~~~g~~vi~iSa~~g~Gi~~L  193 (383)
                      ++++|+..+.. ..+...+..+...+ .+.++|+|+||+|+.++.++..    ..+.+...|..++.+|++.+.++.++
T Consensus       139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~  217 (418)
T 2qag_C          139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKL  217 (418)
T ss_dssp             CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------
T ss_pred             eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHH
Confidence            34455554432 23333333333333 3678999999999998766543    33445556778888898887776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	383
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	1e-62
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-09
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-08
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	5e-08
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	5e-08
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	5e-08
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	7e-08
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	8e-08
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	3e-07
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	7e-07
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	8e-07
d1wxqa1	319	c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr	3e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	4e-06
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	4e-06
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	7e-06
d1ni3a1	296	c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter	1e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-05
d1jala1	278	c.37.1.8 (A:1-278) YchF GTP-binding protein N-term	3e-05
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-04
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-04
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	6e-04
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	6e-04
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-04
d2akab1	299	c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n	8e-04
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	0.001
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	0.001
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.001
d1u0la2	225	c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C	0.001
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	0.002
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.002
d1jwyb_	306	c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc	0.002
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	0.002
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	0.003
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	0.003
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.003
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	0.004
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.004

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score =  200 bits (509), Expect = 1e-62
 Identities = 92/275 (33%), Positives = 151/275 (54%), Gaps = 9/275 (3%)

Query: 106 HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADR 165
           H+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D    A  
Sbjct: 1   HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVT 60

Query: 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY 225
             W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+RA I+G 
Sbjct: 61  QQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGI 120

Query: 226 PNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIK 285
           PNVGKS+LINRL K+ +     RPG+T   +WV+ GK+LE LD+PGI+  +  D+   ++
Sbjct: 121 PNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLR 180

Query: 286 LAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLA--- 342
           LA+   I +   ++ DVA   ++ L          L+ RY +D            +    
Sbjct: 181 LAVTGAIKDSIINLQDVAVFGLRFLEEHYP---ERLKERYGLDEIPEDIAELFDAIGEKR 237

Query: 343 -LHLFNG--DTHQAAFRILTDFRKGKFGWISLERP 374
              +  G  +  +    I+ D R  KFG +S E+P
Sbjct: 238 GCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQP 272

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGKDLEFLDSPGIIPMRI 277
           G+VG+P+VGKS+L++ +   +   A            +     G+     D PG+I    
Sbjct: 5   GLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 64

Query: 278 SDQAAAIK 285
                  +
Sbjct: 65  QGVGLGHQ 72

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 52.0 bits (123), Expect = 1e-08
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGKDLEFLDSPGIIPMRI 277
           G+VGYPN GKSSL+  + +     A            +  V   +     D PGII    
Sbjct: 5   GLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 64

Query: 278 SDQAAAIK 285
             +   ++
Sbjct: 65  EGKGLGLE 72

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 50.1 bits (118), Expect = 5e-08
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
            IVG PNVGKS+L+N+LL +++   + +   TR
Sbjct: 9   AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 41

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.1 bits (118), Expect = 5e-08
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW 257
            IVG PNVGKS+L N+L+K++        GVTR    
Sbjct: 4   LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQ 40

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.1 bits (118), Expect = 5e-08
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW 257
              G  NVGKS+LI RL  +++     RPGVTR +  
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIE 39

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.2 bits (116), Expect = 7e-08
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273
           R  IVG PNVGKS+L+NRLL          PG TR +        G     +D+ G+ 
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 59

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.7 bits (117), Expect = 8e-08
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG---VTRVLKWVRFGKDLEF 266
           SK  +  A++  IVG PNVGKS+L N +L +     +P PG        +    G+   F
Sbjct: 1   SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 60

Query: 267 LDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQM 309
           +D+ G+      +     K    +     S + ADV  I++  
Sbjct: 61  VDTAGLRRKSRVEPRTVEK--YSNYRVVDSIEKADVVVIVLDA 101

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 48.2 bits (113), Expect = 3e-07
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260
            IVG PNVGKS+L+N LL  ++ P +PRP  TR       
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL 48

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (109), Expect = 7e-07
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260
           ++  I G PN GKSSL+N L  R         G TR +     
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHI 44

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (114), Expect = 8e-07
 Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 6/82 (7%)

Query: 206 VKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM----CPAAPRPGVTRVLKWVRF- 260
           +    K +    +   + G    GKSS IN L                 VT      +  
Sbjct: 45  ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP 104

Query: 261 -GKDLEFLDSPGIIPMRISDQA 281
              ++ F D PGI         
Sbjct: 105 NIPNVVFWDLPGIGSTNFPPDT 126

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 26/82 (31%)

Query: 221 GIVGYPNVGKSSLINRLLKRR-------MCPAAPRPGVTRVLKWVRF------------- 260
           G+VG PNVGKS+  +                     GVT  +                  
Sbjct: 4   GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63

Query: 261 ------GKDLEFLDSPGIIPMR 276
                    ++ +D  G++P  
Sbjct: 64  YRNGLALIPVKMVDVAGLVPGA 85

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 2/81 (2%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQA 281
           I G  N GK+SL+  L    + P            +   G  +  +D PG + +R     
Sbjct: 8   IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--DGSGVTLVDFPGHVKLRYKLSD 65

Query: 282 AAIKLAICDDIGERSYDVADV 302
                A          D    
Sbjct: 66  YLKTRAKFVKGLIFMVDSTVD 86

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP 247
            G    +   +    ++    + +     ++   ++G   VGKSS +N ++  R+   +P
Sbjct: 5   SGINTFAPATQTKLLELLGNLKQED--VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP 62

Query: 248 RPGVTRVLKWVRF 260
                     V  
Sbjct: 63  FQSEGPRPVMVSR 75

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.0 bits (102), Expect = 7e-06
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK-RRMCPAAPRP 249
           MK+++ ++ + S V  ++  +G LP      + G  NVGKSS IN L+  + +   + +P
Sbjct: 1   MKVTK-SEIVISAVKPEQYPEGGLPEI---ALAGRSNVGKSSFINSLINRKNLARTSSKP 56

Query: 250 GVTRVLKWVRFGKDLEFLDSPGI 272
           G T+ L +     +L F+D PG 
Sbjct: 57  GKTQTLNFYIINDELHFVDVPGY 79

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
           + GIVG PNVGKS+    + K  +   A  P  T
Sbjct: 12  KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYAT 45

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC 243
              +     G  N GKSS +N L  ++  
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSL 42

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
             + GIVG PNVGKS+L N L K  +  AA  P  T
Sbjct: 2   GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCT 36

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGKD---LEFLDSPG 271
           I+G  +VGK+S + R       PA     G+   +K +        L+  D+ G
Sbjct: 10  IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259
           + R +R  I+G    GK++++ RL    +    P  G        +
Sbjct: 2   MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYK 47

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQA 281
            VG  + GK+ L  RLL  +          +  +  V   +              +  Q 
Sbjct: 5   FVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQL 64

Query: 282 AAIKLAICD------DIGERSYDVADVAAILVQMLA 311
                +         D      +V DVA  L Q+L 
Sbjct: 65  LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLI 100

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPG---IIP 274
           ++G   VGK+ ++ R  +           G+   ++ +        L+  D+ G      
Sbjct: 11  LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 70

Query: 275 MRISDQAAAIKLAICDDIGERS 296
           +  +    A+ + +  DI    
Sbjct: 71  ITTAYYRGAMGIMLVYDITNEK 92

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGKD---LEFLDSPG------ 271
           ++G   VGKS L+ R ++ +  P+     G+   +K V        L+  D+ G      
Sbjct: 7   LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 66

Query: 272 IIPMRISDQAAAIKLAICDDI 292
           I           I   +  DI
Sbjct: 67  ITTAYYRGAMGII---LVYDI 84

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
           LP+     +VG  + GKSS++   + R   P      VTR    ++              
Sbjct: 26  LPQIA---VVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHC 81

Query: 274 PMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTV 316
             +       ++L I  +    +     ++ + + +    P V
Sbjct: 82  KGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHV 124

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 194 SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR------RMCPAAP 247
           SR  +  A    +           +R G+ G P  GKS+ +            ++   A 
Sbjct: 31  SRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 90

Query: 248 RPGVTR 253
            P    
Sbjct: 91  DPSSPV 96

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGKD---LEFLDSPG 271
           ++G   VGK+ L+ R  +    P      GV  ++K V    +   L+  D+ G
Sbjct: 10  LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 204 VNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW 257
           +++ R+ K    + VR  ++G  N GK++L+ +L    +    P  G       
Sbjct: 3   LSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ 56

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 33/187 (17%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQG 176
           D VI V   ++P  T+  ++D++L        + ++V+N+ D+    D            
Sbjct: 12  DQVILVVTVKMP-ETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 70

Query: 177 --TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLI 234
               ++ ++ + GMG  +L      L   ++                + G   VGKSSL+
Sbjct: 71  GLYPIVKTSAKTGMGIEELKEY---LKGKIST---------------MAGLSGVGKSSLL 112

Query: 235 NRLLKRRMCPAAPR-------PGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLA 287
           N +        +            T   + ++F      +D+PG   + I+D        
Sbjct: 113 NAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH 172

Query: 288 ICDDIGE 294
              + G+
Sbjct: 173 YFKEFGD 179

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276
           IVG  N GK++++ +     +   +P  G                 D  G   +R
Sbjct: 20  IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV-INNTRFLMWDIGGQESLR 73

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 221 GIVGYPNVGKSSLINRLLKR 240
            +VGY + GK++L+ + +  
Sbjct: 5   QVVGYKHSGKTTLMEKWVAA 24

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDS 269
           LP+ V   +VG  + GKSS++  ++ R   P      VTR    ++        D 
Sbjct: 24  LPQIV---VVGSQSSGKSSVLENIVGRDFLPRGSGI-VTRRPLILQLTHLPIADDG 75

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259
            +G  N GK++L++ L   R+    P    T     + 
Sbjct: 5   FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 42

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241
           P+A++  +VG   VGK+ L+       
Sbjct: 3   PQAIKCVVVGDGAVGKTCLLISYTTNA 29

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGKD---LEFLDSPG 271
           I+G   VGKSSL+ R       P  A   GV   +K +    +   L   D+ G
Sbjct: 12  IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276
           +VG    GK++++ +L    +    P  G        +        D  G   +R
Sbjct: 5   MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIR 58

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 222 IVGYPNVGKSSLINRLLKRRM 242
           +VG    GK++ +N +   + 
Sbjct: 7   LVGLQYSGKTTFVNVIASGQF 27

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 4/20 (20%), Positives = 11/20 (55%)

Query: 222 IVGYPNVGKSSLINRLLKRR 241
           ++G  N GK++++ +     
Sbjct: 7   MLGLDNAGKTTILKKFNGED 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	383
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	100.0
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.81
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.75
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.37
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.29
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.28
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.27
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.2
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.2
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.19
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.17
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.11
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.09
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.07
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.03
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.99
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.95
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.89
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.8
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.75
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.71
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.68
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.6
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.55
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.53
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.48
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.47
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.47
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.45
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.42
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.35
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.34
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.34
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.33
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.32
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.31
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.3
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.3
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.29
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.27
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.26
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.26
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.24
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.23
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.21
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.21
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.2
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.19
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.19
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.17
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.12
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.11
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.11
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.05
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.05
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.05
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.03
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.98
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.96
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.95
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.91
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.91
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.91
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.9
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.88
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.88
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.86
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.86
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.84
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.83
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.82
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.8
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.79
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.76
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.75
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.75
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.74
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.71
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.7
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.69
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.68
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.68
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.68
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.66
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.66
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.65
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.64
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.64
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.63
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.61
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.59
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.59
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.58
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.56
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.51
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.5
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.49
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.47
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.44
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.43
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.41
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.41
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.41
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.38
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.37
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.37
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.32
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.32
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.3
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.26
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.26
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.24
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.23
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.18
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.17
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.16
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.16
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.16
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.11
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.02
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.96
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.95
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.94
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.9
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.88
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.86
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	96.79
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.77
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	96.76
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.75
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.66
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.58
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.58
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.58
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.55
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.54
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.51
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.45
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.36
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.26
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.19
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.16
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.06
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.95
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.59
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.43
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.42
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.2
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.07
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.06
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.88
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.85
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	94.7
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.65
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.63
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.57
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.46
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.36
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.31
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.31
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.18
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.1
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.04
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.99
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	93.98
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.96
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.95
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	93.85
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.84
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.82
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.75
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.71
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.67
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.66
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	93.65
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.62
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.61
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.56
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	93.53
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.48
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.38
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.19
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.15
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	93.11
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.93
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.92
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.91
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.88
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	92.83
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	92.6
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	92.58
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.58
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.42
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	92.36
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.33
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.3
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.28
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	92.15
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	92.11
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.05
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	91.93
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	91.77
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	91.47
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.44
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.33
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	91.12
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	90.99
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	90.95
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	90.9
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	90.78
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	90.77
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	90.58
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	90.4
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.28
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	90.25
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	89.91
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.82
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	89.62
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	89.34
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	89.32
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	87.66
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	87.57
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.43
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	87.18
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	87.15
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	87.01
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	86.75
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	86.44
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.32
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	85.86
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	85.43
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	85.38
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	85.33
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	85.07
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	85.05
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	84.98
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	84.9
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	84.61
d2qy9a2	211	GTPase domain of the signal recognition particle r	84.45
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	84.41
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	84.01
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	83.85
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	83.79
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	83.67
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	83.02
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	82.93
d1okkd2	207	GTPase domain of the signal recognition particle r	82.85
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	82.55
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	82.41
d1j8yf2	211	GTPase domain of the signal sequence recognition p	81.57
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	81.56
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	81.33
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	81.08
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	80.88
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	80.77
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	80.09

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.8e-55  Score=413.65  Aligned_cols=266  Identities=35%  Similarity=0.592  Sum_probs=231.2

Q ss_pred             HHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCc
Q 016762          106 HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQ  185 (383)
Q Consensus       106 h~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~  185 (383)
                      ||.++.++++++++.+|+||+|+|||+|.++.++.+++++.+||+|+|+||+||++++..+.|.++|+..+...+++|+.
T Consensus         1 Hm~ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           1 HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred             CHHHHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999888889999999


Q ss_pred             CCCchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEE
Q 016762          186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLE  265 (383)
Q Consensus       186 ~g~Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~  265 (383)
                      ++.|..++.+.+.++..........++.....++|++||+||||||||||+|.+++.+.|++.||+||+.++++++.++.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~  160 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELE  160 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEE
T ss_pred             cCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeE
Confidence            99999988777666655444444444555678999999999999999999999999999999999999999999999999


Q ss_pred             EEecCccccCCCCcHHHHHHHHHhcccccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHh
Q 016762          266 FLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL  345 (383)
Q Consensus       266 l~DTpG~i~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~~~a~~~  345 (383)
                      |+||||+++|...+.+.+++++++++|++..++.+++++++++.+++.   +++.+...|+++....+..+|++.+|++.
T Consensus       161 l~DTPGi~~p~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~---~~~~l~~~~~~~~~~~d~~~~l~~ia~~~  237 (273)
T d1puja_         161 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH---YPERLKERYGLDEIPEDIAELFDAIGEKR  237 (273)
T ss_dssp             EEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHH---CHHHHHHHTTCSSCCSSHHHHHHHHHHHH
T ss_pred             EecCCCccccCCccHHHHhhhhhcCCcchhhcchhhHHHHHHHHHHHh---ChHhhhHhcCCCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999886   67889999999866677899999999863


Q ss_pred             ----CCC--cHHHHHHHHHHHHhcCCCCceeccCC
Q 016762          346 ----FNG--DTHQAAFRILTDFRKGKFGWISLERP  374 (383)
Q Consensus       346 ----~~g--D~~~Aa~~iL~d~~~Gklg~~~l~~p  374 (383)
                          ++|  |+++||+.||+|||+|+||+||||.|
T Consensus       238 g~~~kgg~~D~~~aa~~~l~d~r~G~lg~~~ld~P  272 (273)
T d1puja_         238 GCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQP  272 (273)
T ss_dssp             TCBCSTTCBCHHHHHHHHHHHHHTTTTCSCCSCCC
T ss_pred             CCcccCCccCHHHHHHHHHHHHHcCCCceeeccCC
Confidence                445  99999999999999999999999987

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=8.4e-20  Score=164.62  Aligned_cols=141  Identities=22%  Similarity=0.318  Sum_probs=107.5

Q ss_pred             hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHH--HcCCeEEEeeCcCCCch
Q 016762          118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA--KQGTKVIFSNGQLGMGT  190 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~l~--~~g~~vi~iSa~~g~Gi  190 (383)
                      +.+.|.++.|+.+..|.... ..+++++     .+.+.++|+||+||++.++...|...+.  ..++.++++|++.+.|+
T Consensus         8 vANiD~vliV~s~~~P~~~~-~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~   86 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGI   86 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             cccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchhH
Confidence            56789999999888775443 3456554     4889999999999999887776665443  34578999999999999


Q ss_pred             hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCC-------CCCceeEEEEEEeCCc
Q 016762          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRFGKD  263 (383)
Q Consensus       191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-------~pgtT~~~~~~~~~~~  263 (383)
                      +.|++.++                  ..+.+++|.+|||||||||+|.+.....++.       -..||++.+++.+..+
T Consensus        87 ~~L~~~l~------------------~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g  148 (225)
T d1u0la2          87 EELKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG  148 (225)
T ss_dssp             HHHHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS
T ss_pred             hhHHHHhc------------------CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC
Confidence            88766542                  1147899999999999999999876555443       2459999999999888


Q ss_pred             EEEEecCccccCCC
Q 016762          264 LEFLDSPGIIPMRI  277 (383)
Q Consensus       264 i~l~DTpG~i~~~~  277 (383)
                      ..|+|||||....+
T Consensus       149 g~iiDTPG~r~~~l  162 (225)
T d1u0la2         149 GYVVDTPGFANLEI  162 (225)
T ss_dssp             CEEESSCSSTTCCC
T ss_pred             cEEEeCCccccccc
Confidence            99999999975544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=4.2e-19  Score=160.45  Aligned_cols=140  Identities=20%  Similarity=0.254  Sum_probs=99.4

Q ss_pred             hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHHH----HHHHHHHHHcCCeEEEeeCcCCC
Q 016762          118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADR----NAWATYFAKQGTKVIFSNGQLGM  188 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~~~~l~~~l-----~~k~~ilVlNK~DL~~~~~~----~~w~~~l~~~g~~vi~iSa~~g~  188 (383)
                      +.+.|.++.|+.+..|... ...+++++     .+.+.++|+||+||++..+.    ..|.+.+...|+.++.+|++.+.
T Consensus         8 vANiD~~~iV~s~~~P~~~-~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~   86 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFS-TALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQD   86 (231)
T ss_dssp             EECCCEEEEEEESTTTTCC-HHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHT
T ss_pred             ccccCEEEEEEECCCCCCC-HHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCChh
Confidence            5678999999999887533 33466654     37789999999999976543    44556677789999999999999


Q ss_pred             chhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhcCCccccCCC-----C--CceeEEEEEEeC
Q 016762          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-----P--GVTRVLKWVRFG  261 (383)
Q Consensus       189 Gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~-----p--gtT~~~~~~~~~  261 (383)
                      |+++|++.++                  ..+.+++|.+|||||||||+|.+.....++..     -  .||+..+.+..+
T Consensus        87 gl~~L~~~l~------------------~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~  148 (231)
T d1t9ha2          87 SLADIIPHFQ------------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS  148 (231)
T ss_dssp             TCTTTGGGGT------------------TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET
T ss_pred             HHHHHHHhhc------------------cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecC
Confidence            9988765532                  11367999999999999999998755554332     2  388887777765


Q ss_pred             CcEEEEecCccccCCC
Q 016762          262 KDLEFLDSPGIIPMRI  277 (383)
Q Consensus       262 ~~i~l~DTpG~i~~~~  277 (383)
                       +-.++|||||....+
T Consensus       149 -gg~iiDTPG~r~~~l  163 (231)
T d1t9ha2         149 -GGLVADTPGFSSLEF  163 (231)
T ss_dssp             -TEEEESSCSCSSCCC
T ss_pred             -CCEEEECCccccccc
Confidence             567999999975444

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=1.8e-13  Score=118.04  Aligned_cols=54  Identities=37%  Similarity=0.545  Sum_probs=46.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~  274 (383)
                      +|+|||+||||||||||+|++++ +.+++.||+|++...+.. .++.++||||+-.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~-~~~~~~~g~T~~~~~~~~-~~~~ivDtpG~~~   55 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW-KNHKIIDMPGFGF   55 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEE-TTEEEEECCCBSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-ceeeCCCCEeeccccccc-ccceecccCCcee
Confidence            58999999999999999999876 579999999999776554 4688999999843

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.29  E-value=2.2e-12  Score=118.39  Aligned_cols=64  Identities=25%  Similarity=0.357  Sum_probs=54.0

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCccccCCCCc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMRISD  279 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~~~~~~  279 (383)
                      ..++|+++|.||||||||+|+|+|++.+.+++.+++|++.+...  . +..+.++|||||......+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~   97 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN   97 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchH
Confidence            46899999999999999999999999889999999999876543  2 5579999999998654433

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=5.2e-13  Score=126.13  Aligned_cols=57  Identities=26%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EE-------------------------eCCcEEEEecC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VR-------------------------FGKDLEFLDSP  270 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~-------------------------~~~~i~l~DTp  270 (383)
                      ++||+||+||||||||||+||+.+ +.+++.||||.++..  ..                         ....+.++|+|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~-~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCC-CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            369999999999999999999874 799999999987531  10                         01248899999


Q ss_pred             ccccC
Q 016762          271 GIIPM  275 (383)
Q Consensus       271 G~i~~  275 (383)
                      |++..
T Consensus        80 Gli~g   84 (319)
T d1wxqa1          80 GLVPG   84 (319)
T ss_dssp             -----
T ss_pred             Ccccc
Confidence            99864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.27  E-value=2.3e-12  Score=120.63  Aligned_cols=63  Identities=29%  Similarity=0.316  Sum_probs=51.5

Q ss_pred             CCCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC------------------CcEEEEecCccc
Q 016762          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG------------------KDLEFLDSPGII  273 (383)
Q Consensus       214 ~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~------------------~~i~l~DTpG~i  273 (383)
                      .+..++|||||+||||||||||+||+.+...+++.||||.++  ..+.+.                  ..+.++|.||++
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            345689999999999999999999987766899999999985  334432                  257899999999


Q ss_pred             cCC
Q 016762          274 PMR  276 (383)
Q Consensus       274 ~~~  276 (383)
                      ...
T Consensus        87 ~gA   89 (296)
T d1ni3a1          87 KGA   89 (296)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.20  E-value=1.7e-12  Score=112.32  Aligned_cols=55  Identities=33%  Similarity=0.503  Sum_probs=44.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe--CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~i~l~DTpG~i~  274 (383)
                      .|+|||+||||||||+|+|++++ ..+++.+|+|++...  ...  +..+.++||||++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~   61 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE   61 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC-CceecCCCceEeeeeceeEecCCcEEEEecCCCccc
Confidence            59999999999999999999877 467888888877543  222  34689999999975

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.1e-11  Score=104.42  Aligned_cols=60  Identities=32%  Similarity=0.431  Sum_probs=50.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccCCC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI  277 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~~  277 (383)
                      ++|+++|.||||||||+|+|++++...++..||+|++......   +..+.++||||+.....
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~   64 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD   64 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccc
Confidence            6899999999999999999999887778999999988654332   45788999999986543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=1.7e-12  Score=109.30  Aligned_cols=58  Identities=38%  Similarity=0.535  Sum_probs=49.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      ++|+++|+||||||||+|+|+|++...+++.||+|+.......   +..+.++||||+...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~   61 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE   61 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccC
Confidence            4799999999999999999999988889999999988644332   456889999998644

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.17  E-value=7e-12  Score=116.19  Aligned_cols=57  Identities=40%  Similarity=0.562  Sum_probs=42.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeC------------------CcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~------------------~~i~l~DTpG~i~  274 (383)
                      .++|||||+||||||||||+||+.+ +.+++.||||.++.  .+.+.                  ..+.++|.||++.
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~-~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~   78 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA   78 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCC-CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCC
Confidence            4689999999999999999999775 68999999999864  34332                  2477999999985

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=4.5e-11  Score=102.66  Aligned_cols=58  Identities=40%  Similarity=0.630  Sum_probs=49.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR  276 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~~  276 (383)
                      .|+|||.||||||||+|+|++.+...+++.+++|++......   +..+.++||||+....
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~   67 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM   67 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccc
Confidence            599999999999999999999887789999999998654322   4578999999997543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.09  E-value=3e-11  Score=103.88  Aligned_cols=56  Identities=38%  Similarity=0.563  Sum_probs=43.1

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe--CCcEEEEecCccccC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPM  275 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~i~l~DTpG~i~~  275 (383)
                      .|+|+|.||||||||+|+|++++. .+++.+++|++...  ...  +..+.++||||++..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~   62 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG   62 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-ceeccCCCceeeeeceeeecCCCeEEEcCCCeeecC
Confidence            489999999999999999998764 56666776666443  222  456899999999754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=3.5e-11  Score=103.75  Aligned_cols=59  Identities=39%  Similarity=0.625  Sum_probs=43.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i~  274 (383)
                      ..++|+++|.||||||||+|+|++++...+++.+++|+....  ... +..+.++||||+..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~   68 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR   68 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccc
Confidence            468999999999999999999999888889999999988643  222 56789999999964

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=2.3e-10  Score=111.14  Aligned_cols=63  Identities=24%  Similarity=0.219  Sum_probs=45.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCc----cccCCCCCceeEEEEEEe--CCcEEEEecCccccCCCC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRM----CPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPMRIS  278 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~----~~v~~~pgtT~~~~~~~~--~~~i~l~DTpG~i~~~~~  278 (383)
                      .+++|+|+|.||||||||+|+|+|...    +...+..+||++...+..  ..++.|+||||+......
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~  123 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP  123 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCccccccc
Confidence            468999999999999999999998542    234455678998766554  457999999999765543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=9.7e-11  Score=99.77  Aligned_cols=57  Identities=37%  Similarity=0.527  Sum_probs=35.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      +|+++|+||||||||+|+|+++....+++.+|+|+......+   ...+.+.||||+...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~   61 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN   61 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeee
Confidence            699999999999999999999887789999999998543322   446889999999764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.95  E-value=6.4e-10  Score=96.56  Aligned_cols=61  Identities=34%  Similarity=0.602  Sum_probs=42.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeCCcEEEEecCccccCCCC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRIS  278 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~~~~  278 (383)
                      ++|+|||+||||||||||+|+|++. ..++..+++|++.........+.++|++|+-.....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~   85 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS   85 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeecccccc
Confidence            4799999999999999999998653 468889999999888888888999999998755443

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=5.5e-10  Score=95.15  Aligned_cols=56  Identities=32%  Similarity=0.440  Sum_probs=43.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEE--e-CCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~i~l~DTpG~i~  274 (383)
                      .|+|+|+||||||||||+|++++...+++.+++|+......  . ...+..+|++|+..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM   65 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCcee
Confidence            48999999999999999999988777888888877643222  2 34567889999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=9.4e-10  Score=95.98  Aligned_cols=53  Identities=28%  Similarity=0.390  Sum_probs=41.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccccC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM  275 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i~~  275 (383)
                      ++|+|||+||||||||||+|++.+.     .|++|++.....+   +..+.+.||||.-..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~-----~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~   59 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSV-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKL   59 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSC-----CCBCCCSSCEEETTGGGSSCEEEECCCCGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEecceEEEEEeCCeEEEEEecccccch
Confidence            5799999999999999999998653     3677776544343   456899999998643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.75  E-value=2e-08  Score=85.99  Aligned_cols=100  Identities=19%  Similarity=0.189  Sum_probs=72.0

Q ss_pred             CCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHHHHH-----
Q 016762          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAK-----  174 (383)
Q Consensus       102 w~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~l~~-----  174 (383)
                      ..||| ..+.+.+...+..+|+++.++|++.+......++...+  .++|.++|+||+|+++.+......+.++.     
T Consensus        65 d~~g~-~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~  143 (179)
T d1wb1a4          65 DAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST  143 (179)
T ss_dssp             CCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred             ccccc-cccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHh
Confidence            34666 56777888889999999999999987554433443333  37899999999999987654333222221     


Q ss_pred             ---cCCeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          175 ---QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       175 ---~g~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                         .+..++++||++|.|+.+|.+.+.+...
T Consensus       144 ~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~  174 (179)
T d1wb1a4         144 HNLKNSSIIPISAKTGFGVDELKNLIITTLN  174 (179)
T ss_dssp             SSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCCCeEEEEEccCCcCHHHHHHHHHhcCC
Confidence               1247899999999999999887765543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.73  E-value=2.8e-09  Score=91.50  Aligned_cols=57  Identities=23%  Similarity=0.323  Sum_probs=33.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCC------CceeEEE---EEEeCCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVLK---WVRFGKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p------gtT~~~~---~~~~~~~i~l~DTpG~i  273 (383)
                      .++|++||+||||||||+|+|++.......+..      |.|.+..   ....+..+.++||||..
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~   70 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA   70 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccc
Confidence            468999999999999999999976544443333      3333321   11124467788999864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=4.8e-09  Score=89.18  Aligned_cols=57  Identities=19%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE-EEEEEeCCcEEEEecCcc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGKDLEFLDSPGI  272 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~-~~~~~~~~~i~l~DTpG~  272 (383)
                      ..++|+++|+||||||||+|+|++.+........++|.. .............++.+.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY   72 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecc
Confidence            457899999999999999999998765555544444444 444444344444444443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.68  E-value=4.4e-08  Score=83.36  Aligned_cols=114  Identities=14%  Similarity=0.044  Sum_probs=77.6

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCC
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDM  159 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~----~k~~ilVlNK~DL  159 (383)
                      ...+..+.+||...... ....+...+.+.+...++.+|+||+|+|++.+....+..+...+.    ++|+++|+||+|+
T Consensus        49 ~~~~~~~~~~DtpG~~~-~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl  127 (178)
T d1wf3a1          49 TEGRRQIVFVDTPGLHK-PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA  127 (178)
T ss_dssp             EETTEEEEEEECCCCCC-CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGG
T ss_pred             eeeeeeeeecccccccc-cccccchhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhccccc
Confidence            33456778888543321 112223444556667799999999999999887766655555543    6799999999999


Q ss_pred             CCHHHHHHHHHHHHHc-C-CeEEEeeCcCCCchhhhhHHHHHh
Q 016762          160 ISMADRNAWATYFAKQ-G-TKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       160 ~~~~~~~~w~~~l~~~-g-~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .+..+  .+.+.+.+. + ..++++|+++|.|+.+|.+.+.+.
T Consensus       128 ~~~~~--~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~  168 (178)
T d1wf3a1         128 AKYPE--EAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL  168 (178)
T ss_dssp             CSSHH--HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             ccCHH--HHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHh
Confidence            87543  233334332 2 578899999999999887766554

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=5.4e-08  Score=82.20  Aligned_cols=91  Identities=13%  Similarity=0.143  Sum_probs=65.6

Q ss_pred             HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHHHcC-CeEEEeeCcC
Q 016762          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQL  186 (383)
Q Consensus       110 ~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g-~~vi~iSa~~  186 (383)
                      ........+..+|+++.+.|++.+.......+..++.  ++|+++|+||+|+.+....+.- ..+.+.+ ..++++|+++
T Consensus        70 ~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~i~iSAk~  148 (171)
T d1mkya1          70 MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVK-PELYSLGFGEPIPVSAEH  148 (171)
T ss_dssp             HHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTH-HHHGGGSSCSCEECBTTT
T ss_pred             cccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhhhhhHHH-HHHHhcCCCCeEEEecCC
Confidence            3444556789999999999999877766666655543  7899999999999755433222 2232333 5678999999


Q ss_pred             CCchhhhhHHHHHhh
Q 016762          187 GMGTMKLSRLAKALA  201 (383)
Q Consensus       187 g~Gi~~L~~~l~~l~  201 (383)
                      |.|+++|.+.+.+..
T Consensus       149 g~gid~L~~~i~~~l  163 (171)
T d1mkya1         149 NINLDTMLETIIKKL  163 (171)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999987665543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=2.9e-08  Score=81.93  Aligned_cols=54  Identities=22%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i  273 (383)
                      ||++||.||||||||+|+|++.+...+.+..++|..... ..+....+.||+|..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~   55 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA-IGNIKFTTFDLGGHI   55 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEC-CTTCCEEEEECCCSG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEec-cCCeeEEEEeeccch
Confidence            689999999999999999998876666666666654332 124568899999874

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.53  E-value=1.9e-07  Score=80.44  Aligned_cols=90  Identities=14%  Similarity=0.162  Sum_probs=66.6

Q ss_pred             HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHHH-----cCCeEEEeeC
Q 016762          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFSNG  184 (383)
Q Consensus       112 ~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l~~-----~g~~vi~iSa  184 (383)
                      ....+....+|+|++|+|++.+......++.+++.  ++|+++|+||+|+.++.+.....+.+++     ....++++||
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA  176 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSS  176 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCT
T ss_pred             hhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeC
Confidence            33345567789999999999877765555555553  7899999999999887665554444432     2356889999


Q ss_pred             cCCCchhhhhHHHHHhh
Q 016762          185 QLGMGTMKLSRLAKALA  201 (383)
Q Consensus       185 ~~g~Gi~~L~~~l~~l~  201 (383)
                      ++|.|+++|.+.+.++.
T Consensus       177 ~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         177 ETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999988776653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.48  E-value=2.6e-08  Score=88.83  Aligned_cols=55  Identities=20%  Similarity=0.325  Sum_probs=35.2

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EE------------------e-CCcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VR------------------F-GKDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~------------------~-~~~i~l~DTpG~i  273 (383)
                      +.|+|+|.||+|||||+|+|++... ......++|.+...  ..                  . +..+.++||||..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~   81 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAV-ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH-SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcc-hheecCceeeeccccccccccccccccccccceeeccccccccccccccee
Confidence            3499999999999999999997543 22333344443211  11                  1 2468999999963

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.47  E-value=9.3e-08  Score=80.03  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=37.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~  272 (383)
                      .+||++||.+|||||||+|+|.+.....+    +.|.+.....+   +..+.+.||||-
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~   56 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTI----SPTLGFNIKTLEHRGFKLNIWDVGGQ   56 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSC----CCCSSEEEEEEEETTEEEEEEEECCS
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcc----cceEeeeeeeccccccceeeeecCcc
Confidence            46899999999999999999997654333    34444332222   346889999994

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.47  E-value=6.8e-08  Score=81.70  Aligned_cols=57  Identities=26%  Similarity=0.382  Sum_probs=42.2

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      .+.++|++||.+|||||||+|+|.+.+...+.+..|++..  .+.. +-.+.+.||+|--
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~--~i~~~~~~~~i~d~~g~~   71 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK--SVQSQGFKLNVWDIGGQR   71 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE--EEEETTEEEEEEECSSCG
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEE--EeccCCeeEeEeeccccc
Confidence            3568999999999999999999998765455555565543  2233 3468899999964

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.45  E-value=2.9e-07  Score=80.33  Aligned_cols=97  Identities=19%  Similarity=0.176  Sum_probs=66.9

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc-HH---HHHHhcCCCeEEEEEccCCCCHHHHHHH----HHHHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL---MDQWLGNRKRILVLNREDMISMADRNAW----ATYFAK  174 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~-~~---l~~~l~~k~~ilVlNK~DL~~~~~~~~w----~~~l~~  174 (383)
                      .||| ..+.+.+..-+..+|++|.|+|++.+....+ .+   +...++.+++++++||+|+.+......-    .+.+..
T Consensus        93 ~PGH-~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~  171 (205)
T d2qn6a3          93 APGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  171 (205)
T ss_dssp             CSCH-HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             cchH-HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHHHHhcc
Confidence            3888 6777777777899999999999998753322 11   2222334678889999999987643221    122222


Q ss_pred             c---CCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          175 Q---GTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       175 ~---g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      .   ...++++|+++|.|+.+|.+.+.++
T Consensus       172 ~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         172 TWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            1   2468999999999999887776654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=2.7e-07  Score=78.42  Aligned_cols=115  Identities=17%  Similarity=0.086  Sum_probs=77.2

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l-------~~k~~ilVlNK~D  158 (383)
                      .+..+.+||...--. ..+ ..+.......+.+..+|++++++|+.............++       .++|+++|+||+|
T Consensus        47 ~~~~~~~~DtpG~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D  124 (180)
T d1udxa2          47 EEERFTLADIPGIIE-GAS-EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD  124 (180)
T ss_dssp             SSCEEEEEECCCCCC-CGG-GSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCT
T ss_pred             CCCeEEEcCCCeeec-Cch-HHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhh
Confidence            344567777643100 000 1122334555678999999999997532211111111111       2589999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          159 MISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       159 L~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                      +.+++..+...+.+.+.+..++++|+++|.|+++|.+.+.++.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         125 LLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             TSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            99998888777778778889999999999999999888776654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=1.6e-07  Score=78.79  Aligned_cols=55  Identities=22%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i  273 (383)
                      +||++||.+|||||||+|+|.+.+ ...+..|.++.+..  .+..+.   .+.+.||||--
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~   62 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE   62 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCCccCCccceeEEEEEEEECCEEEEEEEEECCCch
Confidence            589999999999999999998654 33344455555543  333332   35689999964

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.34  E-value=2.8e-07  Score=76.26  Aligned_cols=58  Identities=21%  Similarity=0.303  Sum_probs=39.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~  274 (383)
                      +.++|++||.||||||||||++++.+...+.+..+.+... ...-+..+.+.|++|.-.
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   61 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVET-VTYKNLKFQVWDLGGLTS   61 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE-EEETTEEEEEEEECCCGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeee-eccCceEEEEeecccccc
Confidence            3578999999999999999999987654444333332221 112244677888888753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=7.4e-07  Score=73.71  Aligned_cols=84  Identities=18%  Similarity=0.272  Sum_probs=66.0

Q ss_pred             HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhh
Q 016762          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK  192 (383)
Q Consensus       113 ~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~  192 (383)
                      .....+.++|+|++|+|+..+.......+...+...+.++++||+|+.++.......+.+ ..+..++++|+++|.|+++
T Consensus        73 ~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~-~~~~~~~~vSA~~g~gi~~  151 (160)
T d1xzpa2          73 RTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEK  151 (160)
T ss_dssp             HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHH
T ss_pred             HHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccccchhhhHHHHHHh-CCCCcEEEEECCCCCCHHH
Confidence            344568899999999999988877666677777789999999999999876544443333 3346789999999999998


Q ss_pred             hhHHH
Q 016762          193 LSRLA  197 (383)
Q Consensus       193 L~~~l  197 (383)
                      |.+.+
T Consensus       152 L~~~I  156 (160)
T d1xzpa2         152 LEESI  156 (160)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87655

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=2.5e-07  Score=80.36  Aligned_cols=55  Identities=25%  Similarity=0.291  Sum_probs=37.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe--CCcEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~--~~~i~l~DTpG~i  273 (383)
                      +|+|+|.||||||||+|+|++.+...+.+..++|.....+..  +..+.+.||+|.-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~   58 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE   58 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccc
Confidence            589999999999999999998764444333344433322211  3358899999963

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.32  E-value=2.6e-07  Score=76.02  Aligned_cols=55  Identities=18%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i~  274 (383)
                      +||.++|.||||||||+|+|.+.+....  .+.++........ .-.+.+.||||...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~g~~~   56 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDK   56 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC--CCCSSCCEEEEECSSCEEEEEECCCCGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcc--ccceeeEEEEEeeeeEEEEEecCCCccc
Confidence            4799999999999999999987653222  2222221222222 34688999999864

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.31  E-value=1.7e-07  Score=81.10  Aligned_cols=39  Identities=28%  Similarity=0.344  Sum_probs=27.6

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCC--ccccCCCCCceeE
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRV  254 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pgtT~~  254 (383)
                      ..++|+++|++|+|||||+|+|++..  ....+...|.|.+
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~   44 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIK   44 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSC
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccc
Confidence            34689999999999999999998732  2233344555554

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.30  E-value=2.1e-07  Score=81.51  Aligned_cols=58  Identities=24%  Similarity=0.365  Sum_probs=41.5

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCc-----------cccCCCC-----CceeEEEEEEe---CCcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRM-----------CPAAPRP-----GVTRVLKWVRF---GKDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-----------~~v~~~p-----gtT~~~~~~~~---~~~i~l~DTpG~i~  274 (383)
                      .++|+++|.+|+|||||+|+|+....           ......|     |+|.+.....+   +.++.++||||...
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   79 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchh
Confidence            47899999999999999999973210           0111112     88888655443   56799999999764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=5.6e-07  Score=75.67  Aligned_cols=55  Identities=22%  Similarity=0.312  Sum_probs=39.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeCC---cEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~  272 (383)
                      +||++||-+|||||||+|+|.+... ....+.+|.+.....+....   .+.+.||||-
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~   64 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ   64 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCc
Confidence            5799999999999999999986542 12334455555554444433   4778999994

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.2e-07  Score=76.52  Aligned_cols=54  Identities=20%  Similarity=0.359  Sum_probs=38.8

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~  272 (383)
                      +||+++|.+|||||||+|+|.+.. ......+++|.+..  .+..+.   .+.++||||-
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~   64 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ   64 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCCcccccccceEEEEEEEECCEEEEEEEEECCCc
Confidence            589999999999999999999654 44455555555543  333433   3568999993

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=8.5e-07  Score=81.54  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP  249 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p  249 (383)
                      .++|++||-.++|||||||+|+|.....++..|
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~   58 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI   58 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc
Confidence            457999999999999999999998766666655

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.26  E-value=4.7e-07  Score=76.14  Aligned_cols=57  Identities=23%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i~  274 (383)
                      +..||++||.+|||||||+|+|++.....+.+..+.|...  +.. +..+...|+.|...
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   69 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE--LTIAGMTFTTFDLGGHIQ   69 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEE--EEETTEEEEEEEECC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeE--EEecccccccccccchhh
Confidence            4578999999999999999999987655555555555442  232 34567788888754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.26  E-value=1.8e-06  Score=74.40  Aligned_cols=96  Identities=18%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc----HHHHHHhcCCCeEEEEEccCCCCHHHHHHH----HHHHHHc
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH----PLMDQWLGNRKRILVLNREDMISMADRNAW----ATYFAKQ  175 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~----~~l~~~l~~k~~ilVlNK~DL~~~~~~~~w----~~~l~~~  175 (383)
                      ||| ..+.+.+..-+..+|+++.|+|+..+.....    ..+...+..+++++++||+|+.+......-    .+.+...
T Consensus        86 PGh-~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~  164 (195)
T d1kk1a3          86 PGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGT  164 (195)
T ss_dssp             SSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred             chh-hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHHhccc
Confidence            787 6677777777899999999999987653321    122223345567889999999987543221    1222222


Q ss_pred             C---CeEEEeeCcCCCchhhhhHHHHHh
Q 016762          176 G---TKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       176 g---~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      +   ..++++||++|.|+.+|.+.+.++
T Consensus       165 ~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         165 VAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             TTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            2   468899999999999987776553

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5e-07  Score=76.58  Aligned_cols=57  Identities=23%  Similarity=0.281  Sum_probs=39.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCcee--EEEEEEeCC---cEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~--~~~~~~~~~---~i~l~DTpG~i~  274 (383)
                      .+||+++|.+|||||||+|+|++.. ......+.++.  ....+..+.   .+.+.||||.-.
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   68 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDT-FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER   68 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCC-CCCccccceeecceeEEEEEeccccEEEEEECCCchh
Confidence            4689999999999999999999754 22333333333  333444432   478999999743

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.24  E-value=4.9e-07  Score=75.98  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=41.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCccccC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM  275 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~~  275 (383)
                      ..+|++||.||||||||+|+|.+.+...+....+.+..... ..+..+.+.|++|--..
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~   72 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV-INNTRFLMWDIGGQESL   72 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEE-ETTEEEEEEECCC----
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEe-ecceEEEEecccccccc
Confidence            46899999999999999999998776666666665544322 33567889999887543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=8.5e-07  Score=75.52  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=38.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeC-C--cEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG-K--DLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~-~--~i~l~DTpG~i~  274 (383)
                      +||+++|.+|||||||+|+|++.+.. ...+..|.+......... .  .+.+.||+|.-.
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~   63 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER   63 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccc
Confidence            58999999999999999999975421 122334454444333432 2  467899999754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.21  E-value=5.3e-07  Score=76.62  Aligned_cols=58  Identities=21%  Similarity=0.257  Sum_probs=38.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~  274 (383)
                      +.++|+++|.+|||||||+|+|.+.......++.|.+..... .-+-.+.+.||||.-.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~D~~g~~~   73 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS-YKNLKLNVWDLGGQTS   73 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEE-ETTEEEEEEEEC----
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEe-eCCEEEEEEecccccc
Confidence            467899999999999999999987654444444444433222 1144678999999853

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=1e-06  Score=75.83  Aligned_cols=56  Identities=25%  Similarity=0.309  Sum_probs=39.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      +||+|+|.+|||||||+|+|++... ....+..+++.....+.++   -.+.++||||--
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e   66 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE   66 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCch
Confidence            6899999999999999999986542 2233445566555444443   246789999964

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.20  E-value=1.2e-06  Score=80.86  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=25.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP  249 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p  249 (383)
                      .++|++||-.++|||||||+|+|.....++..|
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~   56 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGI   56 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC----
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCc
Confidence            468999999999999999999998765665544

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.19  E-value=4.9e-08  Score=86.91  Aligned_cols=107  Identities=19%  Similarity=0.160  Sum_probs=69.2

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD  164 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~  164 (383)
                      +..+.+.|.        ||| ..+.......+..+|+++.|+||..+.......+..++  .++|.++|+||+|++..+.
T Consensus        69 ~~~~~~iDt--------PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~  139 (227)
T d1g7sa4          69 LPGLFFIDT--------PGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWR  139 (227)
T ss_dssp             CCEEEEECC--------CTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCC
T ss_pred             ccccccccc--------cce-ecccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchh
Confidence            344556663        555 23333333457889999999999987766555555444  3789999999999875321


Q ss_pred             -----------------HHH--------HHHHHHHcC---------------CeEEEeeCcCCCchhhhhHHHHHhhh
Q 016762          165 -----------------RNA--------WATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       165 -----------------~~~--------w~~~l~~~g---------------~~vi~iSa~~g~Gi~~L~~~l~~l~~  202 (383)
                                       ...        ....+...+               ..++++|+.+|.|+++|.+.+..+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         140 VHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             CCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                             000        001111111               25788999999999999888777654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.19  E-value=4.6e-07  Score=78.79  Aligned_cols=57  Identities=25%  Similarity=0.388  Sum_probs=41.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCC---------------ccccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRR---------------MCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~---------------~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      .++|+++|.+|+|||||+|+|++.-               ....+...|.|.+.....+   +..+.++||||-.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~   77 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA   77 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH
Confidence            3789999999999999999997410               0112233588888655444   5679999999975

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=1.5e-06  Score=72.45  Aligned_cols=59  Identities=27%  Similarity=0.343  Sum_probs=39.5

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccccC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIPM  275 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i~~  275 (383)
                      .+||+++|.+|||||||+|+|.+.... ...+..+.+........+.   .+.+.||+|.-..
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   64 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF   64 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccch
Confidence            368999999999999999999864311 1223334444433333332   4689999998654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.9e-06  Score=72.75  Aligned_cols=55  Identities=16%  Similarity=0.328  Sum_probs=37.2

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCc--eeEEEEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV--TRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgt--T~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      +||++||.+|||||||+|++.+.+ ......+++  +.....+..+.   .+.+.||+|--
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e   64 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNE-FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE   64 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC-CCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCCcccccccceeeeEEEEECCEEEEEEecccCCcH
Confidence            589999999999999999998754 222333333  33344444543   46799999963

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.12  E-value=1.4e-06  Score=72.75  Aligned_cols=52  Identities=15%  Similarity=0.175  Sum_probs=35.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~  272 (383)
                      ++|+++|.+|||||||+|+|.+.+. ....  ..|.+....  .. +..+.++||||-
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~-~~~~--~~T~~~~~~~~~~~~~~~~i~D~~G~   57 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQF-NEDM--IPTVGFNMRKITKGNVTIKLWDIGGQ   57 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC-CCSC--CCCCSEEEEEEEETTEEEEEEEECCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCC-CCcc--cccceeeeeeeeeeeEEEEEeecccc
Confidence            5899999999999999999987542 2222  224433322  22 335789999995

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.11  E-value=8.9e-07  Score=74.60  Aligned_cols=54  Identities=15%  Similarity=0.167  Sum_probs=37.4

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ..++|.++|.+|||||||+|+|.+......    ..|........   .-.+.+.||||.-
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~   67 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQD   67 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEE----EEETTEEEEEEEETTEEEEEEEESCCG
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCc----cceeeeeEEEeeccceeeEEecCCCcc
Confidence            357899999999999999999986543222    23333322222   3467899999975

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=5.5e-06  Score=70.08  Aligned_cols=89  Identities=18%  Similarity=0.309  Sum_probs=63.2

Q ss_pred             HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH--HHHHHHHHHHc-----CCeEEEe
Q 016762          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQ-----GTKVIFS  182 (383)
Q Consensus       112 ~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~-----g~~vi~i  182 (383)
                      ..+...++.+|+|++|+|+..+.......+..++  .+.|.|+|+||+|+....+  .....+.+.+.     ..+++++
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  162 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  162 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEE
Confidence            4455667899999999999877666555544443  3789999999999975442  22333333322     2468999


Q ss_pred             eCcCCCchhhhhHHHHHh
Q 016762          183 NGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       183 Sa~~g~Gi~~L~~~l~~l  200 (383)
                      |+++|.|+.+|.+.+.+.
T Consensus       163 Sa~~g~gv~~L~~~i~~~  180 (186)
T d1mkya2         163 SADKGWNIDRMIDAMNLA  180 (186)
T ss_dssp             BTTTTBSHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            999999999887776654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.8e-06  Score=72.40  Aligned_cols=56  Identities=23%  Similarity=0.337  Sum_probs=36.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccC--CCCCceeEEEEEEeCC---cEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA--PRPGVTRVLKWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~--~~pgtT~~~~~~~~~~---~i~l~DTpG~  272 (383)
                      ..||+++|-+|||||||+|++.+.+.....  +..+.+.....+....   .+.+.||||-
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~   66 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ   66 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCc
Confidence            358999999999999999999865422222  2223333333344433   4678999995

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.7e-06  Score=71.47  Aligned_cols=55  Identities=22%  Similarity=0.398  Sum_probs=36.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCC--CceeEEEEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      +||+++|-+|||||||+|++.+.+ ......|  +.+.....+..+.   .+.+.||||--
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~   65 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE   65 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCcccccccccceeeEEEEecCcceeEEEEECCCch
Confidence            689999999999999999998654 2222222  3333333333322   47799999953

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=2e-06  Score=72.34  Aligned_cols=55  Identities=25%  Similarity=0.407  Sum_probs=33.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEe-C---CcEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRF-G---KDLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~-~---~~i~l~DTpG~  272 (383)
                      +||++||.+|||||||+|++++.+... ..+..+.+........ +   ..+.+.||+|-
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~   62 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ   62 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCc
Confidence            689999999999999999998754221 2233333333322222 2   23678999995

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.05  E-value=5.3e-06  Score=70.30  Aligned_cols=89  Identities=16%  Similarity=0.057  Sum_probs=59.2

Q ss_pred             HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH------Hh-----cCCCeEEEEEccCCCCHHHH-HHHHHHHHHcCCeE
Q 016762          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ------WL-----GNRKRILVLNREDMISMADR-NAWATYFAKQGTKV  179 (383)
Q Consensus       112 ~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~------~l-----~~k~~ilVlNK~DL~~~~~~-~~w~~~l~~~g~~v  179 (383)
                      +.+.+.+.++++++.+++..........+...      ..     .++|+++|+||+|+.+.... +.+.+.+ ..+.++
T Consensus        71 ~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~v  149 (185)
T d1lnza2          71 HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL-TDDYPV  149 (185)
T ss_dssp             HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC-CSCCCB
T ss_pred             HHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh-ccCCcE
Confidence            44556688999999999877654444322111      11     15799999999999876543 2222222 235678


Q ss_pred             EEeeCcCCCchhhhhHHHHHhh
Q 016762          180 IFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       180 i~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      +++||++|.|+++|.+.+.+..
T Consensus       150 ~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         150 FPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             CCCSSCCSSTTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            8999999999999877665443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.05  E-value=1.6e-05  Score=66.85  Aligned_cols=87  Identities=21%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             HHHhhhcCeEEEEEecCC-----------CCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHH-H-HHHHHHHHH----c
Q 016762          115 KDQLKLMDVVIEVRDARI-----------PLSTTHPLMDQWL--GNRKRILVLNREDMISMAD-R-NAWATYFAK----Q  175 (383)
Q Consensus       115 ~~~idr~DlILeV~DaR~-----------p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~-~-~~w~~~l~~----~  175 (383)
                      ...++.+|++++|+|++.           .....+.++.+.+  .++|+++|+||+|++...+ . ..+.+.+..    .
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEI  155 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHHHHHHHHHHhccccccc
Confidence            345678999999999864           2333334444433  3789999999999875432 2 222222211    0


Q ss_pred             CCeEEEeeCcCCCchhhhhHHHHHhh
Q 016762          176 GTKVIFSNGQLGMGTMKLSRLAKALA  201 (383)
Q Consensus       176 g~~vi~iSa~~g~Gi~~L~~~l~~l~  201 (383)
                      ...++++|+++|.|+.+|.+.+.++.
T Consensus       156 ~~~~~~vSA~~g~gi~~L~~~i~~~l  181 (184)
T d2cxxa1         156 DKVFIPISAKFGDNIERLKNRIFEVI  181 (184)
T ss_dssp             HHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            12477899999999999988776554

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.1e-06  Score=72.77  Aligned_cols=107  Identities=12%  Similarity=0.015  Sum_probs=69.4

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH-HH----hcCCCeEEEEEccCCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-QW----LGNRKRILVLNREDMI  160 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~-~~----l~~k~~ilVlNK~DL~  160 (383)
                      .+.....+|..... .+-..+.....+.....+..+|++++++|+..+......++. ..    ..++|+++|+||+||.
T Consensus        47 ~~~~~~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~  125 (161)
T d2gj8a1          47 DGMPLHIIDTAGLR-EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT  125 (161)
T ss_dssp             TTEEEEEEECCCCS-CCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred             cCceeeeccccccc-cccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhh
Confidence            34455566643221 122333444555566778999999999999987766544422 12    2378999999999986


Q ss_pred             CHHHHHHHHHHHHH-cCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          161 SMADRNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       161 ~~~~~~~w~~~l~~-~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +....      +.+ .+..++++||++|.|+++|.+.+.+
T Consensus       126 ~~~~~------~~~~~~~~~~~iSAk~~~gi~~L~~~l~~  159 (161)
T d2gj8a1         126 GETLG------MSEVNGHALIRLSARTGEGVDVLRNHLKQ  159 (161)
T ss_dssp             CCCCE------EEEETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hhHHH------HHHhCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            54210      111 2457899999999999988766543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.8e-06  Score=70.92  Aligned_cols=55  Identities=20%  Similarity=0.278  Sum_probs=37.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~i  273 (383)
                      +||++||-+|||||||+|++.+.+ ......+.++.+  ......+.   .+.+.||||--
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~   64 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKK-FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE   64 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC-CCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCCcccccccccceeEEEEECCEEEEEEEeccCCch
Confidence            589999999999999999998654 233333444433  33444433   56789999953

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=5.5e-06  Score=69.13  Aligned_cols=58  Identities=24%  Similarity=0.442  Sum_probs=38.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i~  274 (383)
                      .+||++||.+|||||||+|+|.+.+... ..+..+.+........+.   .+.+.||+|-..
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   65 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER   65 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchh
Confidence            4689999999999999999999654211 122233333333333333   356899999754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.8e-06  Score=70.32  Aligned_cols=54  Identities=24%  Similarity=0.192  Sum_probs=31.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCC---cEEEEecCcc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~  272 (383)
                      .||+++|.+|||||||+|++.+.......+..+.+.. ..+.++.   .+.+.||||-
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~l~i~D~~g~   58 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ   58 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEE-EEEEETTEEEEEEEEECC--
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeec-ceeeccccccceeeeecccc
Confidence            4799999999999999999987643222222222222 2233332   4678999995

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=7.3e-06  Score=68.88  Aligned_cols=56  Identities=20%  Similarity=0.177  Sum_probs=39.2

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~  274 (383)
                      .+||++||.+|||||||||++++..  ..+..+.++.+..  .+.++.   .+.+.||+|...
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~   66 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE   66 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCC--CCcccccccccceeeEeccCCeeeeeeccccccccc
Confidence            4689999999999999999998654  2334444444432  333332   367899999864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=9e-07  Score=74.64  Aligned_cols=55  Identities=15%  Similarity=0.254  Sum_probs=22.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeCC---cEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~i~l~DTpG~  272 (383)
                      -.||+++|.+|||||||+|+|++.. ...+..|..+.+  ...+..+.   .+.++||||-
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~   65 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ   65 (173)
T ss_dssp             EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC-CCCccCccccceEEEEEEEECCEEEEEEEEECCCc
Confidence            3689999999999999999999643 222333333333  33344433   3567999995

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.7e-06  Score=69.06  Aligned_cols=57  Identities=25%  Similarity=0.299  Sum_probs=36.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      -.||++||.+|||||||+|++++.+-. ......+.+........+.   .+.+.||+|..
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~   66 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE   66 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcc
Confidence            358999999999999999999865421 1222334443333334333   35689999964

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.95  E-value=3.1e-06  Score=73.61  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      ..++|+++|..|+|||||+|+|++
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHh
Confidence            347899999999999999999986

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.94  E-value=7.3e-06  Score=68.48  Aligned_cols=57  Identities=23%  Similarity=0.418  Sum_probs=39.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccc-cCCCCCceeEEEEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      .+||++||.+|||||||++++.+..... ..+.+|.+.....+..+.   .+.+.||+|--
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~   63 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE   63 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCch
Confidence            4689999999999999999998654221 233444333333344432   47899999975

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=8.1e-06  Score=68.23  Aligned_cols=104  Identities=13%  Similarity=-0.003  Sum_probs=63.5

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-H----HHHhc--CCCeEEEEEc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQWLG--NRKRILVLNR  156 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l----~~~l~--~k~~ilVlNK  156 (383)
                      .....++.+||..-+         ..........+..+|.++.|+|..++.+..+.. +    .....  ..|+++|.||
T Consensus        44 ~~~~~~l~i~D~~g~---------e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK  114 (168)
T d2gjsa1          44 DGEEASLMVYDIWEQ---------DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK  114 (168)
T ss_dssp             TTEEEEEEEEECC----------------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEC
T ss_pred             cccccceeeeecccc---------cccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecc
Confidence            445577888884322         333334456789999999999987654433221 1    11111  4689999999


Q ss_pred             cCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHH
Q 016762          157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       157 ~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +||....+  ...-.++-...+..++.+|+++|.|+.++.+.
T Consensus       115 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~  156 (168)
T d2gjsa1         115 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG  156 (168)
T ss_dssp             TTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred             cchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHH
Confidence            99875422  11112223445778899999999999887443

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.91  E-value=8.9e-06  Score=70.38  Aligned_cols=84  Identities=18%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH---hcCCCeEEEEEccCCCCHHHH-H----HHHHHHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---LGNRKRILVLNREDMISMADR-N----AWATYFAK  174 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~---l~~k~~ilVlNK~DL~~~~~~-~----~w~~~l~~  174 (383)
                      -||| ..+.+.+...+..+|+++.|+||..+......+...+   +..+++|+++||+|+++.++. +    +..+++..
T Consensus        73 tPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~  151 (196)
T d1d2ea3          73 CPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE  151 (196)
T ss_dssp             CSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             Ccch-HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHH
Confidence            4888 6677888888999999999999998765443333332   345678899999999864322 1    22233433


Q ss_pred             cC-----CeEEEeeCcCC
Q 016762          175 QG-----TKVIFSNGQLG  187 (383)
Q Consensus       175 ~g-----~~vi~iSa~~g  187 (383)
                      .|     ..++++|+..|
T Consensus       152 ~~~~~~~~pii~iSa~~g  169 (196)
T d1d2ea3         152 FGYKGEETPIIVGSALCA  169 (196)
T ss_dssp             TTSCTTTSCEEECCHHHH
T ss_pred             hCCCcccCEEEEEEcccc
Confidence            33     34788998776

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1e-05  Score=67.27  Aligned_cols=55  Identities=22%  Similarity=0.280  Sum_probs=36.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      ..+|++||.+|||||||+|++++.+-  ......++-+.  ....++.   .+.+.||+|--
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~   62 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE   62 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCC--CCccCCceeeeeeeeeecCcceEeeccccCCCcc
Confidence            46899999999999999999997542  22222222232  2223332   46789999964

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.8e-06  Score=69.98  Aligned_cols=56  Identities=21%  Similarity=0.288  Sum_probs=35.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeE--EEEEEeC---CcEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~---~~i~l~DTpG~i~  274 (383)
                      .||++||.+|||||||+|++.+.+ ......|..+..  .......   ..+.+.||+|-..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   64 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES   64 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC-CCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCC-CCCCcccceeeccceeeeeeeeeEEEEEeecccCccc
Confidence            579999999999999999998654 233333333332  2222232   2568999999864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.90  E-value=3.2e-06  Score=70.94  Aligned_cols=102  Identities=14%  Similarity=0.122  Sum_probs=65.2

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~D  158 (383)
                      .+..+.+||....         ..........+..+|.+++++|+.++.+..+.  .+....     .+.|+++|.||+|
T Consensus        58 ~~~~~~i~d~~g~---------~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~D  128 (176)
T d1fzqa_          58 QGFKLNVWDIGGQ---------RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD  128 (176)
T ss_dssp             TTEEEEEEECSSC---------GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTT
T ss_pred             CCeeEeEeecccc---------ccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecc
Confidence            3566777774332         33345556779999999999998765433221  122222     1579999999999


Q ss_pred             CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHH
Q 016762          159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +.+........+.+.     ..+..++.+||++|.|+.++.+.
T Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~  171 (176)
T d1fzqa_         129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNW  171 (176)
T ss_dssp             STTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            986544333333321     12345778999999999886554

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4e-06  Score=70.43  Aligned_cols=103  Identities=10%  Similarity=-0.031  Sum_probs=68.9

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HH---HHhcCCCeEEEEEccC
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MD---QWLGNRKRILVLNRED  158 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~---~~l~~k~~ilVlNK~D  158 (383)
                      ......+.+||....         ..........+..+|.++.|+|..++.+..+..  +.   +...+.|+++|.||+|
T Consensus        48 ~~~~~~l~i~D~~g~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~D  118 (170)
T d1i2ma_          48 NRGPIKFNVWDTAGQ---------EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD  118 (170)
T ss_dssp             TTCCEEEEEEECTTH---------HHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCC
T ss_pred             ccccccccccccccc---------cccceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhh
Confidence            334567788885332         333333345688999999999998876655432  11   2223789999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          159 MISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       159 L~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      |........-.......+..++.+|+++|.|+.++..
T Consensus       119 l~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~  155 (170)
T d1i2ma_         119 IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  155 (170)
T ss_dssp             CSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred             hhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9765433222233345567888999999999988743

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.7e-06  Score=69.96  Aligned_cols=55  Identities=18%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCC--CceeEEEEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      .||+++|.+|||||||+|++++.. ......|  |.......+..+.   .+.+.||+|-.
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~-f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~   63 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE   63 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCcccccceecccccccccccccccccccccccccc
Confidence            579999999999999999998653 2211112  2222222333332   47899999964

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=2.3e-06  Score=71.32  Aligned_cols=101  Identities=12%  Similarity=0.087  Sum_probs=66.1

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccC
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNRED  158 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~~k~~ilVlNK~D  158 (383)
                      ......+.+||.....         +........++.+|+++.|+|..++.+..+.     ++.....+.|+++|.||+|
T Consensus        47 ~~~~~~~~i~d~~g~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~D  117 (164)
T d1z2aa1          47 NDEDVRLMLWDTAGQE---------EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID  117 (164)
T ss_dssp             TTEEEEEEEECCTTGG---------GTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGG
T ss_pred             cCceeeeeeeccCCcc---------chhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCC
Confidence            3344567778754322         1122223568899999999999876554332     1222334789999999999


Q ss_pred             CCCH-----HHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHH
Q 016762          159 MISM-----ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       159 L~~~-----~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +...     ++.+.|   ..+.+..++++|+++|.|+.++.+.
T Consensus       118 l~~~~~v~~~~~~~~---~~~~~~~~~e~Sak~g~~v~e~f~~  157 (164)
T d1z2aa1         118 LLDDSCIKNEEAEGL---AKRLKLRFYRTSVKEDLNVSEVFKY  157 (164)
T ss_dssp             GGGGCSSCHHHHHHH---HHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             cccceeeeehhhHHH---HHHcCCEEEEeccCCCcCHHHHHHH
Confidence            8654     233333   3345778899999999999887443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=8.1e-06  Score=67.70  Aligned_cols=54  Identities=22%  Similarity=0.305  Sum_probs=36.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCce--eEEEEEEeCC---cEEEEecCccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT--~~~~~~~~~~---~i~l~DTpG~i  273 (383)
                      ||++||-+|||||||+|++++.+ ......|.++  ........+.   .+.+.||+|--
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   60 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE   60 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC-CCCccccceeeeccceeeccCCCceeeeecccCCcc
Confidence            69999999999999999999654 2323333333  3333333332   35799999974

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.86  E-value=8.1e-06  Score=68.32  Aligned_cols=109  Identities=8%  Similarity=-0.043  Sum_probs=67.9

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEE
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLN  155 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlN  155 (383)
                      +......+.+||..-.         ..........+..+|.++.|+|..++.+.....     +.+..  .+.|.++|.|
T Consensus        47 ~~~~~~~l~i~d~~g~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgn  117 (168)
T d1u8za_          47 LDGEEVQIDILDTAGQ---------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN  117 (168)
T ss_dssp             ETTEEEEEEEEECCC------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred             cccccccccccccccc---------cchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEec
Confidence            3445567778874322         223344446788999999999988755543321     11111  2568999999


Q ss_pred             ccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhH-HHHHh
Q 016762          156 REDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR-LAKAL  200 (383)
Q Consensus       156 K~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~-~l~~l  200 (383)
                      |+|+.....  .+....+.++.+..++.+|+++|.|++++-+ +++++
T Consensus       118 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i  165 (168)
T d1u8za_         118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             CGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            999854321  1233334455678889999999999988643 33433

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=9.2e-06  Score=67.60  Aligned_cols=56  Identities=27%  Similarity=0.304  Sum_probs=35.8

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCce--eEEEEEEeCC--cEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGK--DLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT--~~~~~~~~~~--~i~l~DTpG~i~  274 (383)
                      .||++||.+|||||||||+|++.. ......|...  ........+.  .+.+.||+|.-.
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~   63 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE   63 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC-CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC-CCCccCCccceeeccceeeeceeeeeeeeeccCccc
Confidence            579999999999999999999754 2222222222  2222222222  367899999864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.6e-05  Score=64.92  Aligned_cols=105  Identities=11%  Similarity=-0.068  Sum_probs=67.1

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H----HHHHh---cCCCeEEEEE
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL---GNRKRILVLN  155 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-~----l~~~l---~~k~~ilVlN  155 (383)
                      ......+.+||......         ........+..+|+++.|+|..++.+..+. .    +.+..   .+.|+++|.|
T Consensus        46 ~~~~~~l~~~d~~g~~~---------~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgn  116 (171)
T d2erxa1          46 DKSICTLQITDTTGSHQ---------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN  116 (171)
T ss_dssp             TTEEEEEEEEECCSCSS---------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred             ccccceecccccccccc---------ccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEee
Confidence            33445677888654321         123334568899999999998765444332 1    21211   2578999999


Q ss_pred             ccCCCCH-----HHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          156 REDMISM-----ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       156 K~DL~~~-----~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      |+|+...     ++...+   .++.+..++.+|+++|.|++++.+.+-++
T Consensus       117 K~Dl~~~~~v~~~e~~~~---~~~~~~~~~e~Sak~~~~v~e~f~~l~~~  163 (171)
T d2erxa1         117 KCDESPSREVQSSEAEAL---ARTWKCAFMETSAKLNHNVKELFQELLNL  163 (171)
T ss_dssp             CGGGGGGCCSCHHHHHHH---HHHHTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred             cccccccccccHHHHHHH---HHHcCCeEEEEcCCCCcCHHHHHHHHHHH
Confidence            9998643     233333   34557788999999999998885554443

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.1e-05  Score=67.31  Aligned_cols=55  Identities=25%  Similarity=0.267  Sum_probs=36.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~  274 (383)
                      .||+++|.+|||||||+|++++..  .......|..+..  ...++.   .+.+.||+|.-.
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~--f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~   62 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGT--FRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ   62 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCC--CCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC--CCCccCcceeeccccceeeccccceecccccccccc
Confidence            579999999999999999998654  2233333333321  223332   356799999853

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=8.1e-06  Score=69.18  Aligned_cols=57  Identities=21%  Similarity=0.189  Sum_probs=37.5

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEeCC---cEEEEecCccc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII  273 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~~---~i~l~DTpG~i  273 (383)
                      ++.+||++||-+|||||||+|++++..  ..+....|+.+...  +..+.   .+.+.|+.|--
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~--f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~   64 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE   64 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSS--CCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCC--CCcccccceeeceeeeeeccCcceEEEeecccccc
Confidence            456899999999999999999999754  22333333333322  22222   35688999864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=4.9e-06  Score=70.65  Aligned_cols=24  Identities=21%  Similarity=0.450  Sum_probs=21.8

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      +||+++|.+|||||||+|+|.+.+
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~   29 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNK   29 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCC
Confidence            689999999999999999999643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.8e-05  Score=65.80  Aligned_cols=57  Identities=25%  Similarity=0.454  Sum_probs=36.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE-EEEEeCC---cEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~i~l~DTpG~i~  274 (383)
                      ..||+++|-+|||||||+|+|.+..- .....|....+. ..+.++.   .+.+.||+|--.
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~   64 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE   64 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCC-CSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCC-CcccCcceecccceEEecCcEEEEeeecccccccc
Confidence            46899999999999999999986542 212223222222 2333432   467899999854

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=1.5e-05  Score=66.05  Aligned_cols=57  Identities=23%  Similarity=0.287  Sum_probs=38.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEe---CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~---~~~i~l~DTpG~i  273 (383)
                      ..||+++|.+|||||||+|++.+.+-. ......+.+........   ...+.+.|++|.-
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE   62 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCch
Confidence            468999999999999999999865422 12233344443333333   2357899999975

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.4e-05  Score=66.82  Aligned_cols=56  Identities=21%  Similarity=0.184  Sum_probs=34.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~  274 (383)
                      ..||++||.+|||||||||++.+..  ..++...|+.+..  .+.++.   .+.+.||+|...
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~   65 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE   65 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC--CCcccCcccccceeeeeeeccccccccccccccccc
Confidence            3689999999999999999998653  2223222333322  223332   467999999864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.8e-05  Score=66.08  Aligned_cols=57  Identities=25%  Similarity=0.315  Sum_probs=37.5

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      ..||++||-+|||||||+++|.+.+.. ...+..+.+.........   -.+.+.||+|--
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~   66 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE   66 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCch
Confidence            357999999999999999999965421 223333444333333332   247789999964

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.9e-05  Score=66.75  Aligned_cols=87  Identities=13%  Similarity=0.096  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc---------CCCeEEEEEccCCCCH-----HHHHHHHHHHH
Q 016762          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---------NRKRILVLNREDMISM-----ADRNAWATYFA  173 (383)
Q Consensus       108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l~---------~k~~ilVlNK~DL~~~-----~~~~~w~~~l~  173 (383)
                      ++........++.+|.++.|+|..++.+...  +..+..         ..|+++|.||+||...     ++...|   ..
T Consensus        75 e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~---~~  149 (186)
T d2f7sa1          75 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL---AD  149 (186)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH---HH
T ss_pred             hhhHHHHHHHHhcCCEEEEEEecccccccee--eeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHH---HH
Confidence            5555555677899999999999876443322  222221         3468899999999643     333333   34


Q ss_pred             HcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          174 KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       174 ~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +.+..++.+|+++|.|+.++.+.+-+
T Consensus       150 ~~~~~~~e~Sak~~~~i~e~f~~l~~  175 (186)
T d2f7sa1         150 KYGIPYFETSAATGQNVEKAVETLLD  175 (186)
T ss_dssp             HTTCCEEEEBTTTTBTHHHHHHHHHH
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            56778899999999999887554443

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.7e-05  Score=66.23  Aligned_cols=104  Identities=9%  Similarity=-0.063  Sum_probs=64.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~D  158 (383)
                      ....+.+||..-.         ..........+..+|+++.|+|..++.+.....     +.+..  ...|.++|.||+|
T Consensus        51 ~~~~~~~~d~~g~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~D  121 (171)
T d2erya1          51 RAARLDILDTAGQ---------EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKAD  121 (171)
T ss_dssp             EEEEEEEEECC-------------CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTT
T ss_pred             ccccccccccccc---------ccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccc
Confidence            3445666664322         233344456788999999999987765443321     11111  2578999999999


Q ss_pred             CCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHHH
Q 016762          159 MISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       159 L~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l~  198 (383)
                      +.....  .....++.++.+..++.+|+++|.|+.++...+-
T Consensus       122 l~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1         122 LDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             CTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             hhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            864321  1222333455677888999999999988755443

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.2e-05  Score=68.34  Aligned_cols=54  Identities=22%  Similarity=0.188  Sum_probs=36.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEe-CC--cEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GK--DLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~--~i~l~DTpG~  272 (383)
                      .+||+++|.+|||||||+|++.+..  ..+....|+.+..  .+.. +.  .+.+.||+|-
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~~~--f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~   67 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ   67 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCceeeeeeEEEeeCCceEEeeccccccc
Confidence            4789999999999999999998643  2233333333322  2222 22  3679999996

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.74  E-value=1.8e-05  Score=66.08  Aligned_cols=55  Identities=22%  Similarity=0.210  Sum_probs=33.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i~  274 (383)
                      .||+++|-+|||||||+|++++.+  .......|+-+.  ..+.++.   .+.+.||+|.-.
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~--f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~   64 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED   64 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC--CCcccCCccccccccccccccccccccccccccccc
Confidence            489999999999999999998644  122222222221  1222332   467899999854

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.5e-05  Score=65.90  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=36.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC-C--cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-~--~i~l~DTpG~i  273 (383)
                      .++|+++|-+|||||||+|++.+...   .....++.+.  ..+.++ .  .+.+.||+|-.
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f---~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~   63 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSY---QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP   63 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCC---CCCCCSSCEEEEEEEEETTEEEEEEEEECSSCC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC---CCcCCccceeEEEEeecCceEEEEEEeeccccc
Confidence            47899999999999999999987652   2222222221  223343 2  36788999965

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.1e-05  Score=65.91  Aligned_cols=105  Identities=11%  Similarity=-0.011  Sum_probs=65.9

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNR  156 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK  156 (383)
                      ....+.+.+||.....         +........+..+|+++.|+|..++.+.....     +.+..  .+.|.++|.||
T Consensus        50 ~~~~~~l~~~d~~g~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK  120 (173)
T d2fn4a1          50 DGIPARLDILDTAGQE---------EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK  120 (173)
T ss_dssp             TTEEEEEEEEECCCTT---------TTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEEC
T ss_pred             CCeeeeeecccccccc---------ccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEe
Confidence            3345677788854432         12223345678899999999998764443211     11111  25689999999


Q ss_pred             cCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       157 ~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +||.....  ...-..+..+.+..++.+|+++|.|+.++.+.+
T Consensus       121 ~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  163 (173)
T d2fn4a1         121 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL  163 (173)
T ss_dssp             GGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             echhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99864321  122223334567888899999999999875443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.69  E-value=5.9e-06  Score=69.85  Aligned_cols=105  Identities=11%  Similarity=0.048  Sum_probs=63.5

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc-----CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG-----NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l~-----~k~~ilVlNK~D  158 (383)
                      .+..+.+||....         ..........+..+|.+++|+|..++.+....  .+...+.     +.|+++|.||+|
T Consensus        59 ~~~~~~i~D~~g~---------~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~D  129 (182)
T d1moza_          59 KNLKLNVWDLGGQ---------TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD  129 (182)
T ss_dssp             TTEEEEEEEEC-------------CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTT
T ss_pred             CCEEEEEEecccc---------cccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeec
Confidence            3556677774322         22223333567899999999999876654332  2333332     579999999999


Q ss_pred             CCCHHHHHHHHHHH-----HHcCCeEEEeeCcCCCchhhhhHHHHH
Q 016762          159 MISMADRNAWATYF-----AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       159 L~~~~~~~~w~~~l-----~~~g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      +..........+.+     ...+..++.+||++|.|+.++.+.+-+
T Consensus       130 l~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~  175 (182)
T d1moza_         130 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLID  175 (182)
T ss_dssp             STTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            96432222222222     122346788999999999887554433

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=8.7e-06  Score=67.50  Aligned_cols=105  Identities=14%  Similarity=0.110  Sum_probs=68.0

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l-~~k~~ilVlNK~  157 (383)
                      ......+.+||....         .+........+..+|.++.++|..++.+..+..  +...   . .+.|+++|.||+
T Consensus        45 ~~~~~~~~i~d~~g~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~  115 (164)
T d1yzqa1          45 EDRTIRLQLWDTAGQ---------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT  115 (164)
T ss_dssp             SSCEEEEEEEEECCS---------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECT
T ss_pred             CCCceeeeecccCCc---------chhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEeccc
Confidence            334456667774332         333444456799999999999997765443321  1111   1 257899999999


Q ss_pred             CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      |+.+...  ........++.+..++.+|+++|.|++++.+.+
T Consensus       116 Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i  157 (164)
T d1yzqa1         116 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  157 (164)
T ss_dssp             TCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             chhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHH
Confidence            9965332  223334445567788999999999998875543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.68  E-value=4e-05  Score=67.44  Aligned_cols=89  Identities=16%  Similarity=0.237  Sum_probs=59.9

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH---hcCCCeEEEEEccCCCCHH--H----HHHHHHHHH
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---LGNRKRILVLNREDMISMA--D----RNAWATYFA  173 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~---l~~k~~ilVlNK~DL~~~~--~----~~~w~~~l~  173 (383)
                      .||| ..+...+..-+..+|.+++|+||..+......+...+   ++-+.+|+++||+|+++..  .    ......++.
T Consensus        96 ~PGH-~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~  174 (222)
T d1zunb3          96 TPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAE  174 (222)
T ss_dssp             CCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             ccch-hhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccceehhhhHHHHhhhhH
Confidence            3888 7777788878999999999999988765543332222   2335688999999998632  1    122233344


Q ss_pred             HcCC-----eEEEeeCcCCCchhh
Q 016762          174 KQGT-----KVIFSNGQLGMGTMK  192 (383)
Q Consensus       174 ~~g~-----~vi~iSa~~g~Gi~~  192 (383)
                      +.+.     .++++||.+|.|+.+
T Consensus       175 ~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         175 GIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hhccCCCceEEEEEEcccCccCCc
Confidence            4432     457899999988743

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=1.6e-05  Score=65.74  Aligned_cols=82  Identities=15%  Similarity=0.098  Sum_probs=53.6

Q ss_pred             HHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h--cCCCeEEEEEccCCCCH-----HHHHHHHHHHHHcCCeEEE
Q 016762          114 LKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L--GNRKRILVLNREDMISM-----ADRNAWATYFAKQGTKVIF  181 (383)
Q Consensus       114 l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l--~~k~~ilVlNK~DL~~~-----~~~~~w~~~l~~~g~~vi~  181 (383)
                      ....+..+|.+++|+|..++.+..+..  +...   .  .+.|+++|.||+||...     ++...|   .++.+..++.
T Consensus        69 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~---~~~~~~~~~e  145 (165)
T d1z06a1          69 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF---ADTHSMPLFE  145 (165)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHH---HHHTTCCEEE
T ss_pred             ceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHH---HHHCCCEEEE
Confidence            345789999999999998765554321  2222   1  25689999999998643     333333   3456778899


Q ss_pred             eeCcCCCchhhhhHHHH
Q 016762          182 SNGQLGMGTMKLSRLAK  198 (383)
Q Consensus       182 iSa~~g~Gi~~L~~~l~  198 (383)
                      +||++|.+...+.+...
T Consensus       146 ~SAkt~~~~~~V~e~F~  162 (165)
T d1z06a1         146 TSAKNPNDNDHVEAIFM  162 (165)
T ss_dssp             CCSSSGGGGSCHHHHHH
T ss_pred             EecccCCcCcCHHHHHH
Confidence            99988664444443333

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=3.8e-05  Score=63.75  Aligned_cols=55  Identities=24%  Similarity=0.337  Sum_probs=36.2

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCC--CCCceeEEEEEEeC---CcEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP--RPGVTRVLKWVRFG---KDLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~--~pgtT~~~~~~~~~---~~i~l~DTpG~i  273 (383)
                      .||+++|-+|||||||+|++.+.+ .....  ..+.+.....+..+   ..+.+.||+|--
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~   63 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE   63 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCcccccccccchheeeeccCCccceeeeeccCCcc
Confidence            579999999999999999998644 22222  22333333333333   246799999974

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.2e-05  Score=67.17  Aligned_cols=107  Identities=15%  Similarity=0.087  Sum_probs=66.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL  159 (383)
                      ....+.+||...   |      .+........++.+|.++.|+|..++.+.....  +..+.    ...|.++|.||+|+
T Consensus        52 ~~~~l~i~Dt~G---~------e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~  122 (171)
T d2ew1a1          52 EKVKLQIWDTAG---Q------ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL  122 (171)
T ss_dssp             EEEEEEEEEECC---S------GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             EEEEEEEEECCC---c------hhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeeccc
Confidence            446677888432   2      233333345689999999999987654432221  11111    25688999999998


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhh-hHHHHHhh
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKL-SRLAKALA  201 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L-~~~l~~l~  201 (383)
                      .....  .....++.+..+..++++||++|.|++++ .++++++.
T Consensus       123 ~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~  167 (171)
T d2ew1a1         123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI  167 (171)
T ss_dssp             GGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHH
Confidence            65321  12222333455778899999999999987 44444443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=3.6e-05  Score=64.13  Aligned_cols=55  Identities=27%  Similarity=0.401  Sum_probs=35.2

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCce-eEEE-EEEe-CC--cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVLK-WVRF-GK--DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT-~~~~-~~~~-~~--~i~l~DTpG~i  273 (383)
                      .+||.+||-+|||||||+|++.+.. . ......|. -+.. .+.. +.  .+.+.||+|-.
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~-f-~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~   61 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKR-F-IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE   61 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSC-C-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCC-C-CCccCCceeccccccccccccceEEEEeeccccc
Confidence            3689999999999999999999754 1 22222121 1111 1122 22  46789999975

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.6e-05  Score=63.84  Aligned_cols=54  Identities=22%  Similarity=0.251  Sum_probs=34.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~i  273 (383)
                      .||.++|-+|||||||+|++.+..- .....| |.-+.  .....+.   .+.+.||+|--
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f-~~~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~g~~   61 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQF-PEVYVP-TVFENYVADIEVDGKQVELALWDTAGLE   61 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC-CSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC-CCCcCC-ceeeeccccccccccceeeeccccCccc
Confidence            3699999999999999999996542 111112 11121  2223332   47899999974

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2e-05  Score=66.01  Aligned_cols=56  Identities=18%  Similarity=0.079  Sum_probs=34.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeCC---cEEEEecCcc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI  272 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~i~l~DTpG~  272 (383)
                      ..||.++|.+|||||||+|++.+.........+.+..+.  ..+.++.   .+.++|++|.
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~   63 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN   63 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccc
Confidence            358999999999999999999865432222222222222  2233332   3578888764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.5e-05  Score=65.38  Aligned_cols=105  Identities=12%  Similarity=0.013  Sum_probs=63.2

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHH-Hh-----cCCCeEEEEE
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQ-WL-----GNRKRILVLN  155 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~-~l-----~~k~~ilVlN  155 (383)
                      +......+.+||-.-+     +|+ .+..  ....+..+|.++.|||..++.+..+.. +.. ..     .+.|+++|.|
T Consensus        48 ~~~~~~~~~~~d~~~~-----~g~-e~~~--~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgn  119 (172)
T d2g3ya1          48 VDGESATIILLDMWEN-----KGE-NEWL--HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN  119 (172)
T ss_dssp             ETTEEEEEEEECCTTT-----THH-HHHH--HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred             cCCceeeeeeeccccc-----ccc-cccc--ccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEec
Confidence            3344566777875322     233 2221  123578999999999987654432211 111 11     1578999999


Q ss_pred             ccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          156 REDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       156 K~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      |+||....+  .+.-.++-...+..++.+|++.|.|++++.+
T Consensus       120 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~  161 (172)
T d2g3ya1         120 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFE  161 (172)
T ss_dssp             CTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             cccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHH
Confidence            999864321  1111122344577888899999999988743

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=2.6e-05  Score=65.17  Aligned_cols=104  Identities=14%  Similarity=-0.018  Sum_probs=66.5

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEE
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLN  155 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlN  155 (383)
                      .......+.+||..-..         +........++.+|.++.|||..++.+..+.+     +.+..  ...|++++.|
T Consensus        47 ~~~~~~~~~i~d~~g~~---------~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgn  117 (169)
T d1x1ra1          47 IDNQWAILDVLDTAGQE---------EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN  117 (169)
T ss_dssp             ETTEEEEEEEEECCSCG---------GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred             ccccccccccccccccc---------ccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEec
Confidence            34445667788854332         12222345789999999999998765544321     22222  2578999999


Q ss_pred             ccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCC-chhhhhH
Q 016762          156 REDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM-GTMKLSR  195 (383)
Q Consensus       156 K~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~-Gi~~L~~  195 (383)
                      |+|+.....  .+...++..+.+..++.+|++.+. |++++-.
T Consensus       118 K~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1         118 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             CTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             ccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            999865432  122333445567888999999875 9988644

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=9.6e-06  Score=68.18  Aligned_cols=107  Identities=10%  Similarity=0.052  Sum_probs=67.1

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL  159 (383)
                      ....+.+||....         .++.......+..+|+++.|+|..++.+.....  +..+.    .+.|+++|.||+|+
T Consensus        51 ~~~~~~i~d~~g~---------e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl  121 (175)
T d2f9la1          51 KTIKAQIWDTAGQ---------ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL  121 (175)
T ss_dssp             EEEEEEEEECSSG---------GGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEEecccCCc---------HHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecc
Confidence            3456667775433         222233335678999999999998765443321  22221    14689999999999


Q ss_pred             CCHH--HHHHHHHHHHHcCCeEEEeeCcCCCchhhhh-HHHHHhh
Q 016762          160 ISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLS-RLAKALA  201 (383)
Q Consensus       160 ~~~~--~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~-~~l~~l~  201 (383)
                      .+..  ............+..++.+|+++|.|++++. .+++++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~  166 (175)
T d2f9la1         122 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY  166 (175)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence            7542  2222333444566788999999999998873 4444443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.61  E-value=2.1e-05  Score=69.31  Aligned_cols=24  Identities=42%  Similarity=0.512  Sum_probs=21.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      ..++|+++|..++|||||+++|+.
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999963

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=4e-05  Score=65.19  Aligned_cols=55  Identities=24%  Similarity=0.333  Sum_probs=36.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC-C--cEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-~--~i~l~DTpG~i  273 (383)
                      .+||+++|-+|||||||+|++.+.. ......| |+-+.  .....+ .  .+.+.||+|--
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~-f~~~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~g~~   62 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVP-TVFDNYAVTVMIGGEPYTLGLFDTAGQE   62 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCC-CSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCC-CCCCcCC-ceeeecceeEeeCCceeeeeccccccch
Confidence            4789999999999999999999654 2222223 22222  122222 2  47789999974

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=9.7e-05  Score=61.36  Aligned_cols=98  Identities=13%  Similarity=0.041  Sum_probs=63.5

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HH----HH--hcCCCeEEEEEc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MD----QW--LGNRKRILVLNR  156 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~----~~--l~~k~~ilVlNK  156 (383)
                      ......+.+||.......          ......+..+|.++.|+|..++.+..+.. +.    ..  ..+.|+++|.||
T Consensus        46 ~~~~~~l~i~D~~g~~~~----------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK  115 (168)
T d2atva1          46 DDEVVSMEILDTAGQEDT----------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNK  115 (168)
T ss_dssp             TTEEEEEEEEECCCCCCC----------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEEC
T ss_pred             cccceEEEEeeccccccc----------ccchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccc
Confidence            334567888986543211          11234678899999999998765544432 11    11  126899999999


Q ss_pred             cCCCCH-----HHHHHHHHHHHHcCCeEEEeeCcCCCc-hhhhh
Q 016762          157 EDMISM-----ADRNAWATYFAKQGTKVIFSNGQLGMG-TMKLS  194 (383)
Q Consensus       157 ~DL~~~-----~~~~~w~~~l~~~g~~vi~iSa~~g~G-i~~L~  194 (383)
                      +||...     ++...+   ..+.+..++.+|+++|.| +.++-
T Consensus       116 ~Dl~~~r~V~~~e~~~~---a~~~~~~~~e~Saktg~gnV~e~F  156 (168)
T d2atva1         116 ADLDHSRQVSTEEGEKL---ATELACAFYECSACTGEGNITEIF  156 (168)
T ss_dssp             GGGGGGCCSCHHHHHHH---HHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             hhhhhhccCcHHHHHHH---HHHhCCeEEEEccccCCcCHHHHH
Confidence            998543     333333   345578888999999985 77763

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=8.5e-05  Score=61.45  Aligned_cols=98  Identities=10%  Similarity=-0.044  Sum_probs=63.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlNK~D  158 (383)
                      ....+.+|+..-...         ........+..+++++.|+|..++.+.....     +.+..  .+.|+++|.||+|
T Consensus        49 ~~~~l~~~d~~~~~~---------~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  119 (166)
T d1ctqa_          49 ETCLLDILDTAGQEE---------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD  119 (166)
T ss_dssp             EEEEEEEEEECCCGG---------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTT
T ss_pred             eeeeeeeeeccCccc---------cccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccc
Confidence            345566776433322         2334446789999999999987654443221     12222  2478999999999


Q ss_pred             CCCH----HHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          159 MISM----ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       159 L~~~----~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +...    ++...|   .+..+..++.+|+++|.|++++..
T Consensus       120 l~~~~~~~~~~~~~---~~~~~~~~~e~Sak~g~gi~e~f~  157 (166)
T d1ctqa_         120 LAARTVESRQAQDL---ARSYGIPYIETSAKTRQGVEDAFY  157 (166)
T ss_dssp             CSCCCSCHHHHHHH---HHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             cccccccHHHHHHH---HHHhCCeEEEEcCCCCcCHHHHHH
Confidence            9753    233333   344577889999999999988743

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00021  Score=59.24  Aligned_cols=85  Identities=18%  Similarity=0.225  Sum_probs=56.1

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHHHHHHHHH----HHHcC--CeEEEeeCcCC
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATY----FAKQG--TKVIFSNGQLG  187 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~~~~~~~w~~~----l~~~g--~~vi~iSa~~g  187 (383)
                      ...+..+.++.+.|+.........+.....  ...+.++++||+|++.......-.+.    +...+  ..++++||++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g  173 (188)
T d1puia_          94 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK  173 (188)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred             hhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence            334555566666777665444443333322  37889999999999987654433332    32223  46889999999


Q ss_pred             CchhhhhHHHHHh
Q 016762          188 MGTMKLSRLAKAL  200 (383)
Q Consensus       188 ~Gi~~L~~~l~~l  200 (383)
                      .|+++|++.|.++
T Consensus       174 ~Gid~L~~~i~~~  186 (188)
T d1puia_         174 QGVDKLRQKLDTW  186 (188)
T ss_dssp             BSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999998877654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.5e-05  Score=62.72  Aligned_cols=56  Identities=21%  Similarity=0.204  Sum_probs=36.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEE--EEEeCC---cEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~i~l~DTpG~i~  274 (383)
                      ..+|.+||-+|||||||+|++.+..-  ......+.-+..  .+..+.   .+.+.||+|...
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~   63 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ   63 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccccceeEEeeeeEEEeccccccCccc
Confidence            46899999999999999999986542  222222222222  223332   368999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=3.7e-05  Score=65.27  Aligned_cols=51  Identities=18%  Similarity=0.267  Sum_probs=33.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE--Ee-CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~i~l~DTpG~i  273 (383)
                      .+||.++|-+|||||||+|++.-    .....|  |.+....  .. ...+.+.||+|.-
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f----~~~~~p--TiG~~~~~~~~~~~~~~~~D~~gq~   55 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRI----IHGQDP--TKGIHEYDFEIKNVPFKMVDVGGQR   55 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH----HHSCCC--CSSEEEEEEEETTEEEEEEEECC--
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc----CCCCCC--eeeeEEEEEeeeeeeeeeeccccee
Confidence            47899999999999999999931    112222  3333322  22 3468899999974

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=4.8e-05  Score=63.42  Aligned_cols=90  Identities=8%  Similarity=-0.055  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-----cCCCeEEEEEccCCCCHHH---HHHHHHHHHH
Q 016762          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAK  174 (383)
Q Consensus       108 ~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l-----~~k~~ilVlNK~DL~~~~~---~~~w~~~l~~  174 (383)
                      ..........++.+|.++.++|..++.+.....     +....     .+.|+++|.||+|+.....   .....++..+
T Consensus        63 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~  142 (175)
T d1ky3a_          63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS  142 (175)
T ss_dssp             --------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH
T ss_pred             hhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHH
Confidence            333444445689999999999997765432211     11111     1568999999999875421   1122222334


Q ss_pred             cC-CeEEEeeCcCCCchhhhhHHH
Q 016762          175 QG-TKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       175 ~g-~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .+ ..++.+|+++|.|++++...+
T Consensus       143 ~~~~~~~e~SA~~g~gv~e~f~~l  166 (175)
T d1ky3a_         143 LGDIPLFLTSAKNAINVDTAFEEI  166 (175)
T ss_dssp             TTSCCEEEEBTTTTBSHHHHHHHH
T ss_pred             cCCCeEEEEeCCCCcCHHHHHHHH
Confidence            44 568889999999999874433

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=0.00011  Score=61.15  Aligned_cols=57  Identities=23%  Similarity=0.295  Sum_probs=36.5

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC---CcEEEEecCccccC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGIIPM  275 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~---~~i~l~DTpG~i~~  275 (383)
                      ..+|.++|.+|||||||+|++.+..- .-...| +..+.  ..+..+   ..+.+.||+|....
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   65 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIF-VPDYDP-TIEDSYLKHTEIDNQWAILDVLDTAGQEEF   65 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSC-CTTCCT-TCCEEEEEEEEETTEEEEEEEEECCSCGGG
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCC-CcccCc-ceeecccccccccccccccccccccccccc
Confidence            36899999999999999999987542 112122 11121  222332   24679999998643

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=2e-05  Score=65.56  Aligned_cols=83  Identities=8%  Similarity=-0.067  Sum_probs=54.9

Q ss_pred             HHHHHhhhcCeEEEEEecCCCCCCCcHHH--HHH---h-cCCCeEEEEEccCCCCHHH--HHHHHHHHHHcCCeEEEeeC
Q 016762          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLM--DQW---L-GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG  184 (383)
Q Consensus       113 ~l~~~idr~DlILeV~DaR~p~~~~~~~l--~~~---l-~~k~~ilVlNK~DL~~~~~--~~~w~~~l~~~g~~vi~iSa  184 (383)
                      .....+..+|.++.++|..++.+..+...  ...   . ...|+++|.||+|+.....  .....+...+.+..++.+||
T Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  148 (167)
T d1z0ja1          69 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA  148 (167)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             HHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEec
Confidence            34457899999999999876544433211  111   1 2678999999999964321  11222333455788899999


Q ss_pred             cCCCchhhhhH
Q 016762          185 QLGMGTMKLSR  195 (383)
Q Consensus       185 ~~g~Gi~~L~~  195 (383)
                      ++|.|++++..
T Consensus       149 k~~~nV~e~f~  159 (167)
T d1z0ja1         149 KNAININELFI  159 (167)
T ss_dssp             TTTBSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            99999988744

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=2.4e-05  Score=65.20  Aligned_cols=103  Identities=14%  Similarity=-0.016  Sum_probs=63.9

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~DL  159 (383)
                      ....+.+||..-   |      ..........++.+|.++.|+|..++.+.....  +....    ...|+++|.||+|+
T Consensus        52 ~~~~l~~wDt~G---~------e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~  122 (169)
T d3raba_          52 KRIKLQIWDTAG---Q------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM  122 (169)
T ss_dssp             EEEEEEEEEECC---S------GGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTC
T ss_pred             ceEEEEEEECCC---c------hhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccc
Confidence            345677888422   2      222333345689999999999988754433221  11111    25678889999998


Q ss_pred             CCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ......  ........+.|..++.+|+++|.|+.++.+.+
T Consensus       123 ~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  162 (169)
T d3raba_         123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  162 (169)
T ss_dssp             GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHH
Confidence            643221  12222334557889999999999998875443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00011  Score=60.84  Aligned_cols=104  Identities=13%  Similarity=-0.103  Sum_probs=64.3

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEE
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLN  155 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l--~~k~~ilVlN  155 (383)
                      +......+.+||......         ........+..+|+++.++|..++.+..+..     +....  .+.|+++|.|
T Consensus        46 ~~~~~~~l~~~d~~g~~~---------~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgn  116 (167)
T d1kaoa_          46 VDSSPSVLEILDTAGTEQ---------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN  116 (167)
T ss_dssp             ETTEEEEEEEEECCCTTC---------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred             cCcceEeeccccCCCccc---------cccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEE
Confidence            344456677888544322         1233445688999999999987654443321     11111  2568999999


Q ss_pred             ccCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          156 REDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       156 K~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      |+|+.....  ...-.....+.+..++.+|+++|.|++++.+
T Consensus       117 K~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~  158 (167)
T d1kaoa_         117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFA  158 (167)
T ss_dssp             CGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHH
T ss_pred             ccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHH
Confidence            999864321  1111122334567888999999999987643

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=5.5e-05  Score=63.19  Aligned_cols=97  Identities=12%  Similarity=0.099  Sum_probs=62.4

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l-~~k~~ilVlNK~DL  159 (383)
                      ....+.+||.....         .........+..+|+++.|+|..++.+.....  +...   . .+.|+++|.||+|+
T Consensus        50 ~~~~~~i~d~~g~~---------~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~  120 (173)
T d2a5ja1          50 KQIKLQIWDTAGQE---------SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL  120 (173)
T ss_dssp             EEEEEEEECCTTGG---------GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             eEEEEEeecccCcc---------chhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCch
Confidence            34566777754432         11222335678899999999987765443321  1111   1 25789999999997


Q ss_pred             CC-----HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762          160 IS-----MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       160 ~~-----~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~  194 (383)
                      ..     .++...|   .++.+..++.+|+++|.|++++.
T Consensus       121 ~~~~~~~~~~~~~~---a~~~~~~~~e~Sa~tg~~V~e~f  157 (173)
T d2a5ja1         121 ESRRDVKREEGEAF---AREHGLIFMETSAKTACNVEEAF  157 (173)
T ss_dssp             GGGCCSCHHHHHHH---HHHHTCEEEEECTTTCTTHHHHH
T ss_pred             hhhhhhHHHHHHHH---HHHcCCEEEEecCCCCCCHHHHH
Confidence            53     2333333   34457788999999999998873

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.41  E-value=5.3e-05  Score=62.51  Aligned_cols=104  Identities=13%  Similarity=0.109  Sum_probs=64.5

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNR  156 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l-----~~k~~ilVlNK  156 (383)
                      ...+..+.+||..        |+ ..+.......+..+|.+++++|+.+......  ..+...+     .+.|+++|.||
T Consensus        42 ~~~~~~~~~~D~~--------G~-~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  112 (165)
T d1ksha_          42 EHRGFKLNIWDVG--------GQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANK  112 (165)
T ss_dssp             EETTEEEEEEEEC--------CS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred             cccccceeeeecC--------cc-hhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEec
Confidence            4456677888853        22 3344444567899999999999876433322  1233332     25799999999


Q ss_pred             cCCCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHH
Q 016762          157 EDMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       157 ~DL~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +|+.+......-.+.+.     .....++.+|+++|.|+.++.+.
T Consensus       113 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~  157 (165)
T d1ksha_         113 QDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDW  157 (165)
T ss_dssp             TTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             cccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHH
Confidence            99965332222222221     11245788999999999887554

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.41  E-value=0.00015  Score=59.81  Aligned_cols=102  Identities=8%  Similarity=0.029  Sum_probs=64.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~--~~l~~~l~-----~k~~ilVlNK~D  158 (383)
                      .+..+.+||.        ||+ ..........+..+|.+++|+|+.+..+...  ..+..++.     +.|+++|.||.|
T Consensus        45 ~~~~~~i~D~--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~D  115 (164)
T d1zd9a1          45 GNVTIKLWDI--------GGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD  115 (164)
T ss_dssp             TTEEEEEEEE--------CCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred             eeEEEEEeec--------ccc-ccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccc
Confidence            3455667774        332 4445555567899999999999876543221  12233322     679999999999


Q ss_pred             CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHH
Q 016762          159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      +..........+.+.     ..+..++.+|+++|.|+.++.+.
T Consensus       116 l~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~  158 (164)
T d1zd9a1         116 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW  158 (164)
T ss_dssp             STTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHH
Confidence            865332232223321     22346788999999999886443

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=8.2e-05  Score=62.89  Aligned_cols=104  Identities=11%  Similarity=-0.013  Sum_probs=63.8

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH----HHhcCCCeEEEEEc
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNR  156 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~----~~l~~k~~ilVlNK  156 (383)
                      .....+++-+||.....  +|       .......+..+|+++.|||..++.+..+.  ...    ....+.|.++|.||
T Consensus        52 ~~~~~~~l~i~D~~g~e--~~-------~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK  122 (185)
T d2atxa1          52 VGGKQYLLGLYDTAGQE--DY-------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ  122 (185)
T ss_dssp             SSSCEEEEEEECCCCSS--SS-------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEEC
T ss_pred             eCCceEEeecccccccc--hh-------hhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeec
Confidence            33445677788854432  22       12223467889999999999876543321  111    12236799999999


Q ss_pred             cCCCCHHHH--------------HHHHHHHHHcC-CeEEEeeCcCCCchhhhhH
Q 016762          157 EDMISMADR--------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       157 ~DL~~~~~~--------------~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +||.+....              ++..++.++.| ..++.+||++|.|++++-+
T Consensus       123 ~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~  176 (185)
T d2atxa1         123 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFD  176 (185)
T ss_dssp             TTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHH
T ss_pred             cccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHH
Confidence            999753211              11222223344 5677899999999988743

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4.5e-05  Score=63.21  Aligned_cols=102  Identities=13%  Similarity=0.105  Sum_probs=64.7

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l----~~k~~ilVlNK~  157 (383)
                      ......+.+||....         ..........+..+|+++.|+|..+..+.....  +....    ...|.+++.||+
T Consensus        49 ~~~~~~l~i~D~~g~---------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~  119 (166)
T d1z0fa1          49 SGQKIKLQIWDTAGQ---------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA  119 (166)
T ss_dssp             TTEEEEEEEEECTTG---------GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred             CCEEEEEEEeccCCc---------hhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccc
Confidence            334456788885432         222333345688999999999987654433221  11111    156789999999


Q ss_pred             CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhh
Q 016762          158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~  194 (383)
                      |+.....  .+....+.+..+..++.+|+++|.|+.++-
T Consensus       120 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f  158 (166)
T d1z0fa1         120 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  158 (166)
T ss_dssp             TCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             cchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9854331  122333445567888999999999998873

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.6e-05  Score=62.66  Aligned_cols=101  Identities=14%  Similarity=0.019  Sum_probs=62.2

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH----hcCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW----LGNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~----l~~k~~ilVlNK~DL  159 (383)
                      ...++.+||...+.         .........+..+|+++.|+|..++.+..+..  +...    ....+.++|.||+|+
T Consensus        50 ~~~~~~~~d~~g~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl  120 (167)
T d1z08a1          50 KRVNLAIWDTAGQE---------RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL  120 (167)
T ss_dssp             CEEEEEEEECCCC----------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGG
T ss_pred             ccceeeeeccCCcc---------eecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeecccccc
Confidence            44667788854442         22222334688999999999988765543321  1111    125678899999998


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      .....  ..+.....++.+..++.+|+++|.|+.++-+
T Consensus       121 ~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~  158 (167)
T d1z08a1         121 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  158 (167)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             ccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHH
Confidence            64321  1222233445677889999999999988743

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=5.8e-05  Score=70.24  Aligned_cols=24  Identities=29%  Similarity=0.602  Sum_probs=22.0

Q ss_pred             CCceEEeEeecCCCChhHHHHhhh
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      ++..+|+|.|.||||||||+|+|.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            357889999999999999999997

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=7.3e-05  Score=61.88  Aligned_cols=101  Identities=12%  Similarity=-0.033  Sum_probs=64.9

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHhc--CCCeEEEEE
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG--NRKRILVLN  155 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l~--~k~~ilVlN  155 (383)
                      +......+-+||.......         .......+..+|.++.|||..++.+..+..     +.+...  +.|+++|.|
T Consensus        47 ~~~~~~~l~i~d~~g~~~~---------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgn  117 (167)
T d1xtqa1          47 VNGQEYHLQLVDTAGQDEY---------SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN  117 (167)
T ss_dssp             ETTEEEEEEEEECCCCCTT---------CCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEE
T ss_pred             cCcEEEEeeeccccccccc---------ccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeecc
Confidence            3444566777876544221         111124578899999999988765554321     222222  568999999


Q ss_pred             ccCCCC-----HHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          156 REDMIS-----MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       156 K~DL~~-----~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      |+||..     .++...|   .++.+..++.+|+++|.|++++.+
T Consensus       118 K~Dl~~~r~v~~~~~~~~---a~~~~~~~~e~Sak~~~~v~~~f~  159 (167)
T d1xtqa1         118 KKDLHMERVISYEEGKAL---AESWNAAFLESSAKENQTAVDVFR  159 (167)
T ss_dssp             CTTCGGGCCSCHHHHHHH---HHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHH---HHHcCCEEEEEecCCCCCHHHHHH
Confidence            999854     3333434   345577888999999999988743

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=7.6e-05  Score=62.20  Aligned_cols=101  Identities=10%  Similarity=0.011  Sum_probs=65.3

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH---Hh-cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ---WL-GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~---~l-~~k~~ilVlNK~DL  159 (383)
                      ....+.+||....         .+........+..+|.++.|+|...+.+..+..  +..   .. .+.|+++|.||+|+
T Consensus        52 ~~~~~~i~D~~G~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~  122 (174)
T d2bmea1          52 KYVKLQIWDTAGQ---------ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL  122 (174)
T ss_dssp             EEEEEEEEEECCS---------GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             cceeEEEEECCCc---------hhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccc
Confidence            3456778885332         233444456689999999999988654433321  111   11 26799999999998


Q ss_pred             CCHHHH--HHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       160 ~~~~~~--~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      ....+.  .....+..+.+..++.+|+++|.|++++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1         123 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             cchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            643321  222233345577889999999999998744

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.32  E-value=4.6e-05  Score=63.60  Aligned_cols=103  Identities=11%  Similarity=0.039  Sum_probs=62.8

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK~D  158 (383)
                      ....+.+||-.-.         ..........+..+|.+++|+|+..+.+..+.  .+...+     .+.|+++|.||+|
T Consensus        54 ~~~~~~i~D~~g~---------~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~D  124 (173)
T d1e0sa_          54 KNVKFNVWDVGGQ---------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD  124 (173)
T ss_dssp             TTEEEEEEEESCC---------GGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTT
T ss_pred             cceeeEEecCCCc---------chhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccc
Confidence            3456677774332         22234444678999999999998754433322  233332     2689999999999


Q ss_pred             CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      |.+..........+.     ..+..++.+||++|.|+.++.+.|
T Consensus       125 l~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l  168 (173)
T d1e0sa_         125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL  168 (173)
T ss_dssp             STTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            964322222222221     123457789999999998775544

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=3e-05  Score=65.05  Aligned_cols=105  Identities=14%  Similarity=0.102  Sum_probs=64.5

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~------~l~~~l~~k~~ilVlNK~  157 (383)
                      .....++-+||....         ..........+..+|.++.|+|..++.+..+.      .+.....+.|+++|.||+
T Consensus        46 ~~~~~~l~i~D~~g~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~  116 (177)
T d1kmqa_          46 DGKQVELALWDTAGL---------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK  116 (177)
T ss_dssp             TTEEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECG
T ss_pred             cccceeeeccccCcc---------chhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecc
Confidence            334556788885433         22223334568899999999999876543221      111122368999999999


Q ss_pred             CCCCHHHHH--------------HHHHHHHHcC-CeEEEeeCcCCCchhhhhHHH
Q 016762          158 DMISMADRN--------------AWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       158 DL~~~~~~~--------------~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      |+.......              ......++.+ ..++.+|+++|.|++++-+.+
T Consensus       117 Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i  171 (177)
T d1kmqa_         117 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA  171 (177)
T ss_dssp             GGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred             cccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHH
Confidence            997543211              1112223334 467789999999999875443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=3.9e-05  Score=63.86  Aligned_cols=103  Identities=11%  Similarity=0.032  Sum_probs=63.6

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-cCCCeEEEEEccCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNREDM  159 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-----l~~~l-~~k~~ilVlNK~DL  159 (383)
                      ....+.+||....         ..........+..+|.++.++|..++.+..+..     +.+.. .+.|+++|.||+|+
T Consensus        53 ~~~~~~~~d~~g~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl  123 (170)
T d1r2qa_          53 TTVKFEIWDTAGQ---------ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL  123 (170)
T ss_dssp             EEEEEEEEEECCS---------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred             eEEEEEeccCCCc---------hhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccc
Confidence            3456677775433         222333335689999999999987654433221     11111 25788999999998


Q ss_pred             CCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       160 ~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .....  .+...+.....+..++.+||++|.|+.++.+.+
T Consensus       124 ~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_         124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             cccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHH
Confidence            64421  122222334456788999999999998875433

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.32  E-value=0.00014  Score=64.80  Aligned_cols=90  Identities=18%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC----------CCcHHHHHHhcCCCeEEEEEccCCCCH----HHHH--
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS----------TTHPLMDQWLGNRKRILVLNREDMISM----ADRN--  166 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~----------~~~~~l~~~l~~k~~ilVlNK~DL~~~----~~~~--  166 (383)
                      -||| ..+...+..-+..+|.++.|+|+..+..          .....+...+.-+++++++||+|+...    ....  
T Consensus       109 tPGH-~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei  187 (245)
T d1r5ba3         109 APGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKEC  187 (245)
T ss_dssp             CCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHH
T ss_pred             cccc-ccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHHHHHH
Confidence            4888 6677777788899999999999986421          111122223334567799999999632    1112  


Q ss_pred             --HHHHHHHHc-C------CeEEEeeCcCCCchhhh
Q 016762          167 --AWATYFAKQ-G------TKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       167 --~w~~~l~~~-g------~~vi~iSa~~g~Gi~~L  193 (383)
                        ....++.+. +      ..++++||++|.|+.++
T Consensus       188 ~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~  223 (245)
T d1r5ba3         188 VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  223 (245)
T ss_dssp             HHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             HHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccc
Confidence              222233332 2      25789999999998654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.30  E-value=0.0003  Score=60.71  Aligned_cols=58  Identities=22%  Similarity=0.130  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCH
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISM  162 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~-~ilVlNK~DL~~~  162 (383)
                      ||| ..+.+.+...+..+|++|.|+||..+......+...+.  .+.| +++++||+|+++.
T Consensus        75 PGh-~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          75 PGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD  135 (204)
T ss_dssp             CCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC
T ss_pred             CCc-hhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCC
Confidence            787 66777888889999999999999987766544433333  2445 5677999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00019  Score=60.34  Aligned_cols=54  Identities=20%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             eEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE--EEEEeC-C--cEEEEecCccc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII  273 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-~--~i~l~DTpG~i  273 (383)
                      .||.++|.+|||||||++++.... ..-...| |..+.  ..+.++ .  .+.+.||+|--
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~-f~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~   61 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDC-FPENYVP-TVFENYTASFEIDTQRIELSLWDTSGSP   61 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC-CCSSCCC-CSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC-CCCccCC-ceeecccccccccceEEeeccccccccc
Confidence            479999999999999999998654 2212222 22222  222333 2  35689999964

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00028  Score=58.18  Aligned_cols=103  Identities=10%  Similarity=-0.120  Sum_probs=64.0

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h--cCCCeEEEEEc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L--GNRKRILVLNR  156 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l--~~k~~ilVlNK  156 (383)
                      ......+.+||.......         .......+..+|.++.|+|..++.+..+..  +...   .  .+.|.++|.||
T Consensus        47 ~~~~~~~~~~d~~g~~~~---------~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK  117 (167)
T d1c1ya_          47 DCQQCMLEILDTAGTEQF---------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK  117 (167)
T ss_dssp             SSCEEEEEEEEECSSCSS---------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEEC
T ss_pred             eeeEEEeccccccCcccc---------cccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEe
Confidence            344566778876544322         222345789999999999998765544422  1111   1  24689999999


Q ss_pred             cCCCCHHHH--HHHHHHHHH-cCCeEEEeeCcCCCchhhhhH
Q 016762          157 EDMISMADR--NAWATYFAK-QGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       157 ~DL~~~~~~--~~w~~~l~~-~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +|+......  ..-.....+ .+..++.+|+++|.|+.++-+
T Consensus       118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_         118 CDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             TTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             cCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            999644211  111122233 356788899999999988643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00018  Score=59.63  Aligned_cols=104  Identities=10%  Similarity=0.056  Sum_probs=62.4

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h-cCCCeEEEEEc
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L-GNRKRILVLNR  156 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~---l-~~k~~ilVlNK  156 (383)
                      .....+.+-+||....         .+........+..+|.++.++|...+.+.....  +...   . ...++++|.||
T Consensus        51 ~~~~~~~l~i~Dt~G~---------e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k  121 (170)
T d2g6ba1          51 VDGVKVKLQMWDTAGQ---------ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK  121 (170)
T ss_dssp             ETTEEEEEEEEECCCC-----------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             ecCcEEEEEEEECCCc---------hhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEee
Confidence            3444467778884332         333343445689999999999987654433221  1111   1 25789999999


Q ss_pred             cCCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       157 ~DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +|+.....  .+.........+..++.+|+++|.|++++.+
T Consensus       122 ~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1         122 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             CSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             echhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99876422  1111223345577899999999999988743

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.23  E-value=0.00014  Score=65.90  Aligned_cols=122  Identities=15%  Similarity=0.188  Sum_probs=65.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCcc-----cc------CC------CCCceeEEEEE---EeCCcEEEEecCccccCCCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWV---RFGKDLEFLDSPGIIPMRIS  278 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~-----~v------~~------~pgtT~~~~~~---~~~~~i~l~DTpG~i~~~~~  278 (383)
                      +|+++|..++|||||+.+|+-....     .+      .+      .-|.|.+....   +-+..+.++||||..... .
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~-~   86 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT-I   86 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS-T
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH-H
Confidence            6999999999999999999631110     01      11      11333332222   225679999999998543 3


Q ss_pred             cHHHHHHHHHhccc--ccCccChHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHh
Q 016762          279 DQAAAIKLAICDDI--GERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQKLALHL  345 (383)
Q Consensus       279 ~~~~~~~la~~~~i--~~~~~~~~~~~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~fl~~~a~~~  345 (383)
                      +...+++.+ -.++  -+..-..+....-++..+.+.   ....+...+|+|-...+..+.++.+..++
T Consensus        87 e~~~~l~~~-D~avlVvda~~Gv~~~T~~~w~~a~~~---~lP~i~fINKmDr~~ad~~~~l~ei~~~l  151 (276)
T d2bv3a2          87 EVERSMRVL-DGAIVVFDSSQGVEPQSETVWRQAEKY---KVPRIAFANKMDKTGADLWLVIRTMQERL  151 (276)
T ss_dssp             THHHHHHHC-CEEEEEEETTTSSCHHHHHHHHHHHTT---TCCEEEEEECTTSTTCCHHHHHHHHHHTT
T ss_pred             HHHHHHHhh-hheEEeccccCCcchhHHHHHHHHHHc---CCCEEEEEecccccccccchhHHHHHHHh
Confidence            455555421 1111  112222333444455555543   22233445667755666677777766543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.18  E-value=0.00012  Score=60.59  Aligned_cols=103  Identities=10%  Similarity=0.083  Sum_probs=63.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNRED  158 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~D  158 (383)
                      .+.++.+||....         ..........+..++.++.++|..+..+.....  .....     ...|.++|.||+|
T Consensus        57 ~~~~~~~~d~~~~---------~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  127 (177)
T d1zj6a1          57 NNTRFLMWDIGGQ---------ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD  127 (177)
T ss_dssp             TTEEEEEEECCC-------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTT
T ss_pred             cceEEEEeccccc---------cccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccc
Confidence            4566677775332         222233335678899999999987655443221  11111     2679999999999


Q ss_pred             CCCHHHHHHHHHHHH-----HcCCeEEEeeCcCCCchhhhhHHH
Q 016762          159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       159 L~~~~~~~~w~~~l~-----~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      +..........+.+.     ..+..++.+|+++|.|+.++.+.+
T Consensus       128 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L  171 (177)
T d1zj6a1         128 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM  171 (177)
T ss_dssp             STTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence            965443333333332     123468889999999998875544

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00016  Score=60.09  Aligned_cols=84  Identities=13%  Similarity=0.204  Sum_probs=54.1

Q ss_pred             hhhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHH-HHHHHHHHHH-HcC-CeEEEeeCcCCCchhhh
Q 016762          118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMA-DRNAWATYFA-KQG-TKVIFSNGQLGMGTMKL  193 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~~~~l~~~l-~~k~~ilVlNK~DL~~~~-~~~~w~~~l~-~~g-~~vi~iSa~~g~Gi~~L  193 (383)
                      ...+|+++++.|+.............+. ...|.++|+||+|+.... ......+.+. +.+ ..++++|+++|.|+++|
T Consensus        83 ~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L  162 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTI  162 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHH
T ss_pred             hhhcceeEEEEecCccchhHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHH
Confidence            3567888888887753333222222222 367899999999987543 3333323222 233 57899999999999998


Q ss_pred             hHHHHHhh
Q 016762          194 SRLAKALA  201 (383)
Q Consensus       194 ~~~l~~l~  201 (383)
                      .+.+.+..
T Consensus       163 ~~~i~~~l  170 (179)
T d1egaa1         163 AAIVRKHL  170 (179)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhC
Confidence            77765543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00013  Score=66.16  Aligned_cols=57  Identities=26%  Similarity=0.324  Sum_probs=39.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCc-cccCC-CCCceeEEEE-EE-e----CCcEEEEecCccccC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAP-RPGVTRVLKW-VR-F----GKDLEFLDSPGIIPM  275 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~-~pgtT~~~~~-~~-~----~~~i~l~DTpG~i~~  275 (383)
                      -|+++|-..+|||||+|.|.+... ..+++ .-.+|+.+-. .. +    +..++++||.|+...
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~   98 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV   98 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence            589999999999999999998642 22222 1236666532 21 1    235899999999754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=5.2e-05  Score=64.44  Aligned_cols=101  Identities=11%  Similarity=-0.033  Sum_probs=62.9

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~----~l~~k~~ilVlNK~  157 (383)
                      ......+.+||...+         .+........+..+|.++.|+|..++.+..+..  +..    ...+.|+++|.||+
T Consensus        47 ~~~~~~l~i~D~~g~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~  117 (191)
T d2ngra_          47 GGEPYTLGLFDTAGQ---------EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI  117 (191)
T ss_dssp             TTEEEEEEEEEECCS---------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECG
T ss_pred             CCceeeeeccccccc---------hhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence            334456778885433         222223335678999999999998765443321  111    12367899999999


Q ss_pred             CCCCHH-----------------HHHHHHHHHHHc-CCeEEEeeCcCCCchhhhhHH
Q 016762          158 DMISMA-----------------DRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRL  196 (383)
Q Consensus       158 DL~~~~-----------------~~~~w~~~l~~~-g~~vi~iSa~~g~Gi~~L~~~  196 (383)
                      ||.+..                 +...|.   .+. +..++.+|+++|.|++++.+.
T Consensus       118 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~e~SAk~~~~V~e~f~~  171 (191)
T d2ngra_         118 DLRDDPSTIEKLAKNKQKPITPETAEKLA---RDLKAVKYVECSALTQKGLKNVFDE  171 (191)
T ss_dssp             GGGGCHHHHHHHHTTTCCCCCHHHHHHHH---HHTTCSCEEECCTTTCTTHHHHHHH
T ss_pred             cccccchhhhhhhhcccccccHHHHHHHH---HHcCCCeEEEEeCCCCcCHHHHHHH
Confidence            985332                 222222   232 356788999999999987443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00011  Score=61.32  Aligned_cols=100  Identities=10%  Similarity=0.064  Sum_probs=56.4

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-H-HHH----hcCCCeEEEEEccCCC
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-M-DQW----LGNRKRILVLNREDMI  160 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l-~~~----l~~k~~ilVlNK~DL~  160 (383)
                      ...+.+||.        ||+ ..........++.+|.++.|+|..++.+..... + ..+    ..+.|+++|.||.|+.
T Consensus        54 ~~~l~i~D~--------~G~-e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~  124 (173)
T d2fu5c1          54 RIKLQIWDT--------AGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN  124 (173)
T ss_dssp             EEEEEEEEC------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred             EEEEEEEEC--------CCc-hhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccch
Confidence            456778884        332 333333335689999999999998765433221 1 111    1267899999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       161 ~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      ....  .........+.+..++.+|+++|.|+.++-.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1         125 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             hhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            5321  1222233445678889999999999988743

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.11  E-value=0.00024  Score=59.61  Aligned_cols=82  Identities=9%  Similarity=-0.034  Sum_probs=53.8

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEccCCCCHHH-HHHHHHHHHH-cCCeEEEee
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNREDMISMAD-RNAWATYFAK-QGTKVIFSN  183 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l-----~~k~~ilVlNK~DL~~~~~-~~~w~~~l~~-~g~~vi~iS  183 (383)
                      ..+..+|.++.++|..++.+....     ++....     .+.|.++|.||+||..... .....++... .+..++++|
T Consensus        70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  149 (184)
T d1vg8a_          70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETS  149 (184)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECB
T ss_pred             ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEc
Confidence            457889999999998764433221     121211     1468999999999875432 2223233333 357788999


Q ss_pred             CcCCCchhhhhHHH
Q 016762          184 GQLGMGTMKLSRLA  197 (383)
Q Consensus       184 a~~g~Gi~~L~~~l  197 (383)
                      +++|.|+.++.+.+
T Consensus       150 ak~~~gI~e~f~~l  163 (184)
T d1vg8a_         150 AKEAINVEQAFQTI  163 (184)
T ss_dssp             TTTTBSHHHHHHHH
T ss_pred             CCCCcCHHHHHHHH
Confidence            99999999875543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=4.3e-05  Score=64.45  Aligned_cols=104  Identities=15%  Similarity=0.039  Sum_probs=63.1

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEc
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNR  156 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~----~l~~k~~ilVlNK  156 (383)
                      .......+-+||...+  ++|       .......+..+|.++.|+|..++.+..+..  +..    ...+.|+++|.||
T Consensus        48 ~~~~~~~~~~~d~~g~--~~~-------~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK  118 (183)
T d1mh1a_          48 VDGKPVNLGLWDTAGQ--EDY-------DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK  118 (183)
T ss_dssp             ETTEEEEEEEECCCCS--GGG-------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEEC
T ss_pred             ccCcceEEEeeccccc--ccc-------hhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeec
Confidence            3444556677875443  222       222234578999999999998655433221  122    2236799999999


Q ss_pred             cCCCCHHHHH--------------HHHHHHHHcC-CeEEEeeCcCCCchhhhhH
Q 016762          157 EDMISMADRN--------------AWATYFAKQG-TKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       157 ~DL~~~~~~~--------------~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +|+.......              ....+.++.+ ..++.+||++|.|++++-.
T Consensus       119 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~  172 (183)
T d1mh1a_         119 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD  172 (183)
T ss_dssp             HHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred             ccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHH
Confidence            9986543211              1112223334 5678899999999988743

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.02  E-value=0.00034  Score=61.09  Aligned_cols=88  Identities=17%  Similarity=0.214  Sum_probs=58.9

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCC----------CCcHHHHHHhcCCCeEEEEEccCCCCHH----HHH--
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS----------TTHPLMDQWLGNRKRILVLNREDMISMA----DRN--  166 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~----------~~~~~l~~~l~~k~~ilVlNK~DL~~~~----~~~--  166 (383)
                      .||| ..+..++..-+.-+|..|.|+|+..+..          ..+..+...++.+++|+++||+|+....    ..+  
T Consensus        88 tPGH-~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~~~~v  166 (224)
T d1jnya3          88 APGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEI  166 (224)
T ss_dssp             CSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHH
T ss_pred             CCCc-HHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHHHHHHH
Confidence            5888 8888888888999999999999987521          1122344445566788899999997421    111  


Q ss_pred             --HHHHHHHHcC-----CeEEEeeCcCCCchh
Q 016762          167 --AWATYFAKQG-----TKVIFSNGQLGMGTM  191 (383)
Q Consensus       167 --~w~~~l~~~g-----~~vi~iSa~~g~Gi~  191 (383)
                        ....++...+     ..++++|+..|.|+.
T Consensus       167 ~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         167 VDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence              1112233333     356889999988764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.97  E-value=0.00026  Score=59.23  Aligned_cols=51  Identities=20%  Similarity=0.290  Sum_probs=34.4

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i  273 (383)
                      .+||.++|-.|||||||++.+.....      |.++-....+.. ...+.+.||.|-.
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~------~t~~~~~~~~~~~~~~~~i~D~~Gq~   53 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHE------AGTGIVETHFTFKDLHFKMFDVGGQR   53 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHS------CCCSEEEEEEEETTEEEEEEEECCSG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC------CCccEEEEEEEeeeeeeeeecccccc
Confidence            36899999999999999999975331      111112222222 3467899999964

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00069  Score=56.12  Aligned_cols=100  Identities=6%  Similarity=-0.042  Sum_probs=62.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-----CCCeEEEEE
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-----NRKRILVLN  155 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~-----~l~~~l~-----~k~~ilVlN  155 (383)
                      ....+.+||.....         +........+..+|.++.++|...+.+....     ++.+...     +.|+++|.|
T Consensus        53 ~~~~~~i~d~~g~~---------~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgn  123 (174)
T d1wmsa_          53 HFVTMQIWDTAGQE---------RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN  123 (174)
T ss_dssp             EEEEEEEEECCCCG---------GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEE
T ss_pred             ceeeEeeecccCcc---------eehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEecc
Confidence            34556677754331         1123334668999999999998765443221     1222221     468999999


Q ss_pred             ccCCCCHHH-HHHHHHHHHHcC-CeEEEeeCcCCCchhhhh
Q 016762          156 REDMISMAD-RNAWATYFAKQG-TKVIFSNGQLGMGTMKLS  194 (383)
Q Consensus       156 K~DL~~~~~-~~~w~~~l~~~g-~~vi~iSa~~g~Gi~~L~  194 (383)
                      |+|+..... .....++.++.+ ..++.+|+++|.|++++.
T Consensus       124 K~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  164 (174)
T d1wmsa_         124 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  164 (174)
T ss_dssp             CTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             ccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHH
Confidence            999965321 111222333444 678889999999999874

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=7.7e-05  Score=66.31  Aligned_cols=57  Identities=19%  Similarity=0.275  Sum_probs=38.6

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCC----------------c--------------cccCCCCCceeEEEEEE---eCCc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRR----------------M--------------CPAAPRPGVTRVLKWVR---FGKD  263 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~----------------~--------------~~v~~~pgtT~~~~~~~---~~~~  263 (383)
                      .++|+++|..++|||||+-+|+-..                .              ...+...|.|.+.....   -+.+
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~   85 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   85 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence            4789999999999999999995210                0              00112356776643222   2567


Q ss_pred             EEEEecCccc
Q 016762          264 LEFLDSPGII  273 (383)
Q Consensus       264 i~l~DTpG~i  273 (383)
                      +.++||||-.
T Consensus        86 i~iiDtPGH~   95 (239)
T d1f60a3          86 VTVIDAPGHR   95 (239)
T ss_dssp             EEEEECCCCT
T ss_pred             EEEEECCCcH
Confidence            9999999985

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00016  Score=61.46  Aligned_cols=103  Identities=11%  Similarity=-0.025  Sum_probs=64.3

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHH-H---h-cCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQ-W---L-GNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~-~---l-~~k~~ilVlNK~  157 (383)
                      ....+.+.+||....         .++.......+..+|.+++|+|...+.+..... +.. +   . ...|+++|.||+
T Consensus        51 ~~~~~~l~i~Dt~G~---------e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~  121 (194)
T d2bcgy1          51 DGKTVKLQIWDTAGQ---------ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC  121 (194)
T ss_dssp             TTEEEEEEEECCTTT---------TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred             eeEEEEEEEEECCCc---------hhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecc
Confidence            445567788885332         122222234678999999999987654433221 111 1   1 256899999999


Q ss_pred             CCCCHHH--HHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       158 DL~~~~~--~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      |+.+...  ...........+..++++|+++|.|+.++.+
T Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1         122 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             TCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             ccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            9976331  1222233445677889999999999988743

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.90  E-value=0.0015  Score=52.43  Aligned_cols=105  Identities=10%  Similarity=0.051  Sum_probs=65.3

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNR  156 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l-----~~k~~ilVlNK  156 (383)
                      ......+.+||....         .............++.++.++|..++......  .+.+..     ...|++++.||
T Consensus        40 ~~~~~~~~~~d~~g~---------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k  110 (160)
T d1r8sa_          40 EYKNISFTVWDVGGQ---------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK  110 (160)
T ss_dssp             ECSSCEEEEEECCCC---------GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred             eeeeEEEEEecCCCc---------ccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeec
Confidence            345567778875333         22233444678999999999998775443322  122222     25789999999


Q ss_pred             cCCCCHHHHHHHHHH-----HHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          157 EDMISMADRNAWATY-----FAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       157 ~DL~~~~~~~~w~~~-----l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      .|+.+.....+....     ....+..++.+||++|.|+.++.+.|
T Consensus       111 ~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l  156 (160)
T d1r8sa_         111 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL  156 (160)
T ss_dssp             TTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHH
Confidence            998764332222111     11224567889999999998875543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00031  Score=57.84  Aligned_cols=105  Identities=14%  Similarity=0.020  Sum_probs=65.1

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH-HHHh-----cCCCeEEEEEcc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWL-----GNRKRILVLNRE  157 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l-~~~l-----~~k~~ilVlNK~  157 (383)
                      +.....+.+||...   |      ..........++.+|.++.|+|..++.+..+.+. ....     ...+.+++.||.
T Consensus        47 ~~~~~~~~i~Dt~G---~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~  117 (166)
T d1g16a_          47 NGKKVKLQIWDTAG---Q------ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS  117 (166)
T ss_dssp             SSCEEEEEEECCTT---G------GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred             CCEEEEEEEEECCC---c------hhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchh
Confidence            33445677888432   2      1112222356899999999999987654333221 1111     156788999999


Q ss_pred             CCCCHHHH-HHHHHHHHHcCCeEEEeeCcCCCchhhhhHHH
Q 016762          158 DMISMADR-NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       158 DL~~~~~~-~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      |+.+.... +.-.++..+.+..++++|+++|.|+.++.+.+
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l  158 (166)
T d1g16a_         118 DMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  158 (166)
T ss_dssp             TCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHH
Confidence            98754321 11222334557889999999999999885444

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00031  Score=62.24  Aligned_cols=89  Identities=20%  Similarity=0.267  Sum_probs=57.0

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCC----------CCCcHHHHHHhcCCCeEEEEEccCCCCHH--HH----H
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL----------STTHPLMDQWLGNRKRILVLNREDMISMA--DR----N  166 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~----------~~~~~~l~~~l~~k~~ilVlNK~DL~~~~--~~----~  166 (383)
                      .||| ..+.+.+..-+..+|..|.|+||..+.          +.....+...++-+++|+++||+|+++..  ..    .
T Consensus        91 tPGH-~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~~~~~~  169 (239)
T d1f60a3          91 APGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVK  169 (239)
T ss_dssp             CCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHH
T ss_pred             CCCc-HHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHH
Confidence            4888 777888888899999999999997541          11112233333345577899999997532  11    2


Q ss_pred             HHHHHHHHcC-----CeEEEeeCcCCCchhh
Q 016762          167 AWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (383)
Q Consensus       167 ~w~~~l~~~g-----~~vi~iSa~~g~Gi~~  192 (383)
                      ....++...+     ..++++|+..|.|+.+
T Consensus       170 el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         170 ETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            2223343334     3467899999887643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.79  E-value=0.0002  Score=63.73  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhh
Q 016762          217 AVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      .++|+++|..++|||||+.+|+
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHH
T ss_pred             ceEEEEEeeCCCCHHHHHHHHH
Confidence            4679999999999999999994

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.00065  Score=56.89  Aligned_cols=52  Identities=17%  Similarity=0.197  Sum_probs=36.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEE--EEe-CCcEEEEecCccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII  273 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~i~l~DTpG~i  273 (383)
                      .++|.++|-.|||||||++++.... .  ...|  |.....  +.. ...+.+.||.|-.
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~-~--~~~p--TiG~~~~~~~~~~~~~~~~d~~g~~   56 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIH-G--SGVP--TTGIIEYPFDLQSVIFRMVDVGGQR   56 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT-S--SCCC--CCSCEEEEEECSSCEEEEEECCCST
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC-C--CCCc--eeeEEEEEEeccceeeeeccccccc
Confidence            3689999999999999999997543 2  2222  333322  222 3468899999974

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=96.76  E-value=0.00055  Score=61.58  Aligned_cols=56  Identities=23%  Similarity=0.251  Sum_probs=36.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCcc-----cc------CC------CCCceeEEEEEE---eCCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVR---FGKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~-----~v------~~------~pgtT~~~~~~~---~~~~i~l~DTpG~i~  274 (383)
                      +|+++|..++|||||+.+|.....+     .+      .+      .-|.|.+.....   -+..+.++||||...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d   79 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhh
Confidence            5999999999999999999532111     01      11      123444433222   255789999999975

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.75  E-value=0.0016  Score=56.30  Aligned_cols=106  Identities=17%  Similarity=0.214  Sum_probs=64.3

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHH--HHHhh--hcCeEEEEEecCCCCCCCcHH---HHH----HhcCCCeEEEEE
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKEL--KDQLK--LMDVVIEVRDARIPLSTTHPL---MDQ----WLGNRKRILVLN  155 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l--~~~id--r~DlILeV~DaR~p~~~~~~~---l~~----~l~~k~~ilVlN  155 (383)
                      +.++++++.        |||........  ...++  ..+.++.++|+..........   +..    .....|.++|+|
T Consensus        94 ~~~~~~id~--------~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvin  165 (244)
T d1yrba1          94 ENDYVLIDT--------PGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALN  165 (244)
T ss_dssp             HCSEEEEEC--------CSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred             ccceeeecc--------ccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeee
Confidence            567888874        44443322211  12233  356889999987543322211   111    112678999999


Q ss_pred             ccCCCCHHHHHHHHHHHH----------------------------H--cCCeEEEeeCcCCCchhhhhHHHHHh
Q 016762          156 REDMISMADRNAWATYFA----------------------------K--QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       156 K~DL~~~~~~~~w~~~l~----------------------------~--~g~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      |+|+.+.+....+..+..                            .  ....++++|+++|.|+.+|...+.+.
T Consensus       166 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         166 KVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            999998766544432110                            0  12468899999999999998877653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00027  Score=58.42  Aligned_cols=99  Identities=12%  Similarity=0.102  Sum_probs=64.6

Q ss_pred             cCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH----hcCCCeEEEEEccC
Q 016762           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW----LGNRKRILVLNRED  158 (383)
Q Consensus        85 ~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~----l~~k~~ilVlNK~D  158 (383)
                      ....++.+||..-.         ..........+..+|.++.|||..++.+..+..  +...    ....+.+++.||+|
T Consensus        49 ~~~~~l~i~d~~g~---------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d  119 (170)
T d1ek0a_          49 EHTVKFEIWDTAGQ---------ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID  119 (170)
T ss_dssp             TEEEEEEEEEECCS---------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred             cccccccccccCCc---------hhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccc
Confidence            34467788885433         122222345789999999999998765544332  1111    12578999999999


Q ss_pred             CCCH--------HHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          159 MISM--------ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       159 L~~~--------~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +.+.        ++...|   .++.+..++.+|+++|.|++++-.
T Consensus       120 ~~~~~~~~~v~~~~~~~~---~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_         120 MLQEGGERKVAREEGEKL---AEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             GGGSSCCCCSCHHHHHHH---HHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             cccccchhhhhHHHHHHH---HHHcCCEEEEecCCCCcCHHHHHH
Confidence            7532        233333   445678889999999999988643

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.00076  Score=56.40  Aligned_cols=106  Identities=16%  Similarity=0.095  Sum_probs=63.2

Q ss_pred             ccccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH----hcCCCeEEEEE
Q 016762           82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW----LGNRKRILVLN  155 (383)
Q Consensus        82 ~~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~--l~~~----l~~k~~ilVlN  155 (383)
                      .+......+-+||....+..         .......+..+|+++.|+|..++.+.....  +...    -.+.|+++|.|
T Consensus        44 ~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgn  114 (179)
T d1m7ba_          44 EIDTQRIELSLWDTSGSPYY---------DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC  114 (179)
T ss_dssp             ECSSCEEEEEEEEECCSGGG---------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEE
T ss_pred             cccceEEeeccccccccccc---------cccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEe
Confidence            33445567778886544322         112234688999999999997765433211  1121    13679999999


Q ss_pred             ccCCCCHHH--------------HHHHHHHHHHcC-CeEEEeeCcCCC-chhhhhHH
Q 016762          156 REDMISMAD--------------RNAWATYFAKQG-TKVIFSNGQLGM-GTMKLSRL  196 (383)
Q Consensus       156 K~DL~~~~~--------------~~~w~~~l~~~g-~~vi~iSa~~g~-Gi~~L~~~  196 (383)
                      |+|+.....              ..++....++.+ ..++.+|+++|. |++++-+.
T Consensus       115 K~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~  171 (179)
T d1m7ba_         115 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV  171 (179)
T ss_dssp             CGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHH
T ss_pred             cccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHH
Confidence            999853211              112223333444 467779999987 57776443

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0022  Score=53.33  Aligned_cols=101  Identities=15%  Similarity=0.023  Sum_probs=60.8

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh--------cCCCeEEE
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL--------GNRKRILV  153 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~-l~~~l--------~~k~~ilV  153 (383)
                      +......+.+||..-+...              ..++.+|++|.|||..++.+..+.. +...+        ...|+++|
T Consensus        47 v~~~~~~l~i~Dt~g~~~~--------------~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV  112 (175)
T d2bmja1          47 VDGQTHLVLIREEAGAPDA--------------KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALV  112 (175)
T ss_dssp             ETTEEEEEEEEECSSCCCH--------------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEE
T ss_pred             cCceEEEEEEeeccccccc--------------ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEE
Confidence            3345567788885332111              2577899999999988765433321 11111        13478899


Q ss_pred             EEccCCCC-------HHHHHHHHHHHHHc-CCeEEEeeCcCCCchhhhh-HHHHHh
Q 016762          154 LNREDMIS-------MADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLS-RLAKAL  200 (383)
Q Consensus       154 lNK~DL~~-------~~~~~~w~~~l~~~-g~~vi~iSa~~g~Gi~~L~-~~l~~l  200 (383)
                      .||.|+..       ..+...|   ..+. +..++.+|++.|.|+.++. .+++++
T Consensus       113 ~~k~d~d~~~~~~v~~~~~~~~---~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         113 GTQDRISASSPRVVGDARARAL---CADMKRCSYYETCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             EECTTCCSSSCCCSCHHHHHHH---HHTSTTEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             eeecCcchhhhcchhHHHHHHH---HHHhCCCeEEEeCCCCCcCHHHHHHHHHHHH
Confidence            99998743       2233333   2332 4567889999999998873 334444

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00045  Score=57.53  Aligned_cols=109  Identities=17%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             ccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc-----CCCeEEEEEc
Q 016762           84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG-----NRKRILVLNR  156 (383)
Q Consensus        84 ~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~--~l~~~l~-----~k~~ilVlNK  156 (383)
                      ......+.+||...   +      ..........+..+|.++.|||..++.+....  .+.++..     ..+++++.||
T Consensus        52 ~~~~~~~~i~Dt~G---~------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk  122 (177)
T d1x3sa1          52 DGNKAKLAIWDTAG---Q------ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK  122 (177)
T ss_dssp             TTEEEEEEEEEECS---S------GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEEC
T ss_pred             eccccEEEEEECCC---c------hhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeec
Confidence            33456678888322   1      22222233568899999999998764433221  1222221     4678899999


Q ss_pred             cCCCCHHH-HHHHHHHHHHcCCeEEEeeCcCCCchhhhhH-HHHHhh
Q 016762          157 EDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSR-LAKALA  201 (383)
Q Consensus       157 ~DL~~~~~-~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~-~l~~l~  201 (383)
                      .|...... .....++.+..+..++.+|+++|.|+.++.+ +++.+.
T Consensus       123 ~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~  169 (177)
T d1x3sa1         123 IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII  169 (177)
T ss_dssp             TTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence            99865432 2333345556778889999999999998754 444443

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.55  E-value=0.00023  Score=60.53  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      |.-|+++|.||+|||||.|+|...
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999999853

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.54  E-value=0.00051  Score=59.92  Aligned_cols=57  Identities=32%  Similarity=0.449  Sum_probs=32.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCc------------------------------cccCCCCCceeEEEEEEe---CCc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRM------------------------------CPAAPRPGVTRVLKWVRF---GKD  263 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~------------------------------~~v~~~pgtT~~~~~~~~---~~~  263 (383)
                      .++|+++|.-++|||||+-+|+....                              ...+...|.|.+......   +..
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            46899999999999999999852100                              012234566655433222   456


Q ss_pred             EEEEecCccc
Q 016762          264 LEFLDSPGII  273 (383)
Q Consensus       264 i~l~DTpG~i  273 (383)
                      +.++||||-.
T Consensus        83 i~iiDtPGH~   92 (224)
T d1jnya3          83 FTIIDAPGHR   92 (224)
T ss_dssp             EEECCCSSST
T ss_pred             eEEeeCCCcH
Confidence            8899999985

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.00074  Score=62.85  Aligned_cols=20  Identities=25%  Similarity=0.461  Sum_probs=19.0

Q ss_pred             EEeEeecCCCChhHHHHhhh
Q 016762          219 RAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~  238 (383)
                      +|+|+|..++|||||+.+|.
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            49999999999999999996

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.00056  Score=55.74  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=19.3

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      -++|+|++|+|||||+|.|.+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999974

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.36  E-value=0.00081  Score=58.26  Aligned_cols=20  Identities=25%  Similarity=0.298  Sum_probs=18.7

Q ss_pred             EEeEeecCCCChhHHHHhhh
Q 016762          219 RAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~  238 (383)
                      -|+|+|.+|+|||||+|+|+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll   21 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFG   21 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            47999999999999999997

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.26  E-value=0.00068  Score=55.78  Aligned_cols=20  Identities=30%  Similarity=0.659  Sum_probs=18.3

Q ss_pred             EeEeecCCCChhHHHHhhhc
Q 016762          220 AGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~  239 (383)
                      ++|+|++|+|||||++.|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999999864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.19  E-value=0.00095  Score=54.95  Aligned_cols=23  Identities=35%  Similarity=0.756  Sum_probs=20.8

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ++|+|+|-|++|||||++.|++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            37999999999999999999863

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.16  E-value=0.0016  Score=56.36  Aligned_cols=53  Identities=15%  Similarity=0.234  Sum_probs=36.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEe-CCcEEEEecCcccc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP  274 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~i~l~DTpG~i~  274 (383)
                      ..||.++|-.|||||||++.+....   ..++-|.+.  ..+.+ +-.+.+.|+.|-..
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~--~~~~~~~~~~~~~D~~Gq~~   59 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFE--TKFQVDKVNFHMFDVGGQRD   59 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEE--EEEEETTEEEEEEECCCSTT
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEE--EEEEECcEEEEEEecCccce
Confidence            3579999999999999999996432   223344332  22233 34678999999653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.06  E-value=0.0014  Score=60.44  Aligned_cols=24  Identities=54%  Similarity=0.833  Sum_probs=21.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      +..+|+|.|.||||||||+++|..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            567899999999999999999973

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.95  E-value=0.0058  Score=48.98  Aligned_cols=83  Identities=14%  Similarity=0.057  Sum_probs=53.3

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHH-----HcCCeEEEee
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSN  183 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~l~-----~~g~~vi~iS  183 (383)
                      .....++.++.++|...........  +....     ...+++++.||.|+............+.     .....++++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  147 (169)
T d1upta_          68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS  147 (169)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred             hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            4578889999999987654433221  11111     2568889999999986543333322221     2235688899


Q ss_pred             CcCCCchhhhhHHHH
Q 016762          184 GQLGMGTMKLSRLAK  198 (383)
Q Consensus       184 a~~g~Gi~~L~~~l~  198 (383)
                      |++|.|+.++.+.+.
T Consensus       148 A~~g~gv~e~~~~l~  162 (169)
T d1upta_         148 ATKGTGLDEAMEWLV  162 (169)
T ss_dssp             TTTCTTHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            999999998765543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.59  E-value=0.0017  Score=53.02  Aligned_cols=24  Identities=38%  Similarity=0.472  Sum_probs=21.3

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..+|+|+|.|++|||||.++|..+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.43  E-value=0.0058  Score=50.55  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=21.3

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .++-|||.|-+++|||||-|.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            466799999999999999999974

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.42  E-value=0.0033  Score=51.12  Aligned_cols=26  Identities=27%  Similarity=0.539  Sum_probs=23.2

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcC
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +.+++|.|.|.|+|||||+-+.|..+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            56788999999999999999999854

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.20  E-value=0.011  Score=52.66  Aligned_cols=57  Identities=16%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI  160 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~  160 (383)
                      .||| .++..++...+.-+|..+.|+|+..+....-..+.+..  .+.|+++++||+|..
T Consensus        74 tPGh-~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          74 APGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             CCCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             cCch-hhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc
Confidence            4888 77888888899999999999999977665544444433  379999999999964

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.07  E-value=0.0036  Score=50.72  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ++|.|+|.|++||||+-+.|..+
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.06  E-value=0.0068  Score=51.17  Aligned_cols=68  Identities=15%  Similarity=0.053  Sum_probs=41.0

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc---HHHHHHh-------cCCCeEEEEE
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWL-------GNRKRILVLN  155 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~---~~l~~~l-------~~k~~ilVlN  155 (383)
                      .+..+.+||...        |...........+..+|.+++|+|+.+......   ..+..++       ...|+++|+|
T Consensus        45 ~~~~~~~~d~~g--------~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~N  116 (207)
T d2fh5b1          45 RGNSLTLIDLPG--------HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN  116 (207)
T ss_dssp             TCCEEEEEECCC--------CHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred             eeeeeeeeeccc--------cccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEE
Confidence            445566777433        222223344577899999999999875332211   1122222       1457889999


Q ss_pred             ccCCCC
Q 016762          156 REDMIS  161 (383)
Q Consensus       156 K~DL~~  161 (383)
                      |+||..
T Consensus       117 K~Dl~~  122 (207)
T d2fh5b1         117 KQDIAM  122 (207)
T ss_dssp             CTTSTT
T ss_pred             CcccCC
Confidence            999974

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.90  E-value=0.0061  Score=49.39  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ++..|.|+|.|++||||+-+.|..+
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999743

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.012  Score=46.55  Aligned_cols=82  Identities=11%  Similarity=0.111  Sum_probs=49.9

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHH--HHHHh-----cCCCeEEEEEccCCCCHHHHHHHHHHHHH------------cC
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK------------QG  176 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~--l~~~l-----~~k~~ilVlNK~DL~~~~~~~~w~~~l~~------------~g  176 (383)
                      .....++.++.++|..+........  +....     .+.|.+++.||.|+..........+.+..            .+
T Consensus        63 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  142 (166)
T d2qtvb1          63 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP  142 (166)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCC
T ss_pred             hhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCC
Confidence            4567889999999986543322211  11111     25789999999998643222222222211            12


Q ss_pred             CeEEEeeCcCCCchhhhhHHH
Q 016762          177 TKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       177 ~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ..++.+||++|.|+.++.+.|
T Consensus       143 ~~~~~~SA~tg~Gv~e~~~~l  163 (166)
T d2qtvb1         143 VEVFMCSVVMRNGYLEAFQWL  163 (166)
T ss_dssp             EEEEEEBTTTTBSHHHHHHHH
T ss_pred             CEEEEeeCCCCCCHHHHHHHH
Confidence            357889999999998875544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.0058  Score=53.75  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +|+|||.+++|||||++.|.|-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5999999999999999999974

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.70  E-value=0.0054  Score=50.95  Aligned_cols=36  Identities=25%  Similarity=0.206  Sum_probs=25.7

Q ss_pred             EeEeecCCCChhHHHHhhhcCCccccCCCCCceeEE
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~  255 (383)
                      |.|+|-++||||||++.|..+..-.....+-|||..
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~   40 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP   40 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCC
T ss_pred             EEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCC
Confidence            789999999999999999864321223345566653

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.0083  Score=51.71  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=19.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhh
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      .|..|++||-|+|||||.+=.|.
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45568999999999999988886

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.63  E-value=0.0074  Score=53.44  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|||.+++|||||++.|.|-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5999999999999999999874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.57  E-value=0.0075  Score=53.05  Aligned_cols=23  Identities=22%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      -.++|||.+++|||||++.|.|-
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36999999999999999999974

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.0081  Score=53.09  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=20.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|||.+++|||||++.|.|-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5999999999999999999974

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.36  E-value=0.011  Score=52.90  Aligned_cols=58  Identities=21%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             CchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 016762          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS  161 (383)
Q Consensus       103 ~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~~  161 (383)
                      -||| ..+..++...+.-+|..+.|+|+.++....-..+-+..  .+.|+++++||.|...
T Consensus        78 tPG~-~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          78 APGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             CCSS-SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTT
T ss_pred             CCch-hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccc
Confidence            3777 66677778889999999999999877655444333333  3899999999999754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.31  E-value=0.032  Score=45.09  Aligned_cols=82  Identities=12%  Similarity=0.052  Sum_probs=50.5

Q ss_pred             HHhhhcCeEEEEEecCCCCCCCcHH--HHHH-----hcCCCeEEEEEccCCCCHHHHHHHHHHHHHc-------------
Q 016762          116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQW-----LGNRKRILVLNREDMISMADRNAWATYFAKQ-------------  175 (383)
Q Consensus       116 ~~idr~DlILeV~DaR~p~~~~~~~--l~~~-----l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~~-------------  175 (383)
                      ......+.++.++|..+........  +...     ..+.|.+++.||.|+..........+.+...             
T Consensus        76 ~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  155 (186)
T d1f6ba_          76 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE  155 (186)
T ss_dssp             GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTT
T ss_pred             hhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHH
Confidence            5678899999999987644333221  1111     1268999999999985432222222222110             


Q ss_pred             ----CCeEEEeeCcCCCchhhhhHHH
Q 016762          176 ----GTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       176 ----g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                          +..++.+||++|.|+.++.+.+
T Consensus       156 ~~~~~~~~~~~SA~tg~Gi~e~~~~l  181 (186)
T d1f6ba_         156 LNARPLEVFMCSVLKRQGYGEGFRWM  181 (186)
T ss_dssp             CCSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred             hhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence                1247789999999988765433

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.31  E-value=0.009  Score=47.39  Aligned_cols=20  Identities=25%  Similarity=0.459  Sum_probs=18.3

Q ss_pred             EeEeecCCCChhHHHHhhhc
Q 016762          220 AGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~  239 (383)
                      |.++|.|++|||||.+.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.18  E-value=0.01  Score=53.24  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=20.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|.+++|||||++.|+|-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5999999999999999999974

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.10  E-value=0.01  Score=48.27  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=18.5

Q ss_pred             EeEeecCCCChhHHHHhhhc
Q 016762          220 AGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~  239 (383)
                      |+|.|.|++||||+.+.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999964

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.04  E-value=0.011  Score=50.39  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|..++|||||++.|+|-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            4899999999999999999974

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.99  E-value=0.0085  Score=48.80  Aligned_cols=23  Identities=43%  Similarity=0.609  Sum_probs=20.0

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ++|.++|+|+|||||+-+.|..+
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=93.98  E-value=0.011  Score=47.47  Aligned_cols=21  Identities=38%  Similarity=0.404  Sum_probs=19.3

Q ss_pred             EeEeecCCCChhHHHHhhhcC
Q 016762          220 AGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      |.|+|.|++||||+.+.|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999854

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.96  E-value=0.0096  Score=52.76  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|||.+++|||||++.|.|-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            6999999999999999999874

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.95  E-value=0.0062  Score=51.07  Aligned_cols=113  Identities=15%  Similarity=0.055  Sum_probs=54.9

Q ss_pred             hhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHHHHHHHHHHHHcCCeEEEeeCcCCCchhhhhH
Q 016762          118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (383)
Q Consensus       118 idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~~~~~w~~~l~~~g~~vi~iSa~~g~Gi~~L~~  195 (383)
                      +...+..+.|+|+..+.......+..+..  ..+.+++.++++  +... ..+..+....+. ..+++.....+...+.+
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  156 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV--DPEV-IAANIVQVKLGS-PDYVNRDSDEATEDFMR  156 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC--CHHH-HHHHHHHHTTTS-TTTTTSCHHHHHHHHHH
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc--HHHH-HHHhHHHHhcCC-CcccccchHHHHHHHHH
Confidence            44455566788998766555555555443  566777777665  2222 222111111111 11122222222333333


Q ss_pred             HHHHhhhhhhhhhhccCCCCCceEEeEeecCCCChhHHHHhhhc
Q 016762          196 LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       196 ~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .+......   .....  ......+.++|.+|+|||+++|.+.|
T Consensus       157 ~l~~~~~~---~e~~~--~~~~~~~~~I~~~n~g~~~lvn~i~g  195 (213)
T d1bifa1         157 RIECYENS---YESLD--EEQDRDLSYIKIMDVGQSYVVNRVAD  195 (213)
T ss_dssp             HHHHHHTT---CCCCC--TTTTTTSCEEEEETTTTEEEEECCCS
T ss_pred             hhhhcccc---ccccC--ccccCCcCeEecCCCCceeeeccccc
Confidence            32222111   10000  01122367899999999999998876

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.85  E-value=0.012  Score=49.01  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=22.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .|++|.|.|.|++||||+-+.|..+
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999743

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.84  E-value=0.012  Score=51.23  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-+++|||||++.|.|-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4899999999999999999874

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.82  E-value=0.043  Score=51.47  Aligned_cols=107  Identities=10%  Similarity=0.081  Sum_probs=61.1

Q ss_pred             CCcEEEEcCCCCCcCCCchHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHH
Q 016762           87 DADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA  163 (383)
Q Consensus        87 ~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~-~~idr~DlILeV~DaR~p~~~~~~~l~~~l~--~k~~ilVlNK~DL~~~~  163 (383)
                      ..++++||...-...=+.  .+   +.+. ..+.++|++|.+.|.+  ....+.++...+.  ++|+++|+||+|.....
T Consensus       106 ~~~~~l~DtPG~~~~~~~--~~---~~~~~~~~~~~d~~l~~~~~~--~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~  178 (400)
T d1tq4a_         106 IPNVVFWDLPGIGSTNFP--PD---TYLEKMKFYEYDFFIIISATR--FKKNDIDIAKAISMMKKEFYFVRTKVDSDITN  178 (400)
T ss_dssp             CTTEEEEECCCGGGSSCC--HH---HHHHHTTGGGCSEEEEEESSC--CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHH
T ss_pred             CCeEEEEeCCCccccccc--HH---HHHHHhhhhcceEEEEecCCC--CCHHHHHHHHHHHHcCCCEEEEEeCcccccch
Confidence            446788886543221111  12   2222 3478899999998866  4455556655553  79999999999964211


Q ss_pred             -------------HHH----HHHHHHHHcC---CeEEEeeCcC--CCchhhhhHHHHHh
Q 016762          164 -------------DRN----AWATYFAKQG---TKVIFSNGQL--GMGTMKLSRLAKAL  200 (383)
Q Consensus       164 -------------~~~----~w~~~l~~~g---~~vi~iSa~~--g~Gi~~L~~~l~~l  200 (383)
                                   ...    ...+.+...+   ..++.+|+..  ..|+.+|.+.+.+.
T Consensus       179 ~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~  237 (400)
T d1tq4a_         179 EADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD  237 (400)
T ss_dssp             HHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred             hhhcccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHH
Confidence                         111    2233344444   3467777653  34666666555443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.75  E-value=0.011  Score=51.59  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++++|-.++|||||+|.|+|-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4899999999999999999973

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.71  E-value=0.013  Score=51.26  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      .++++|-.++|||||+|.|+|--
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999999853

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.014  Score=48.48  Aligned_cols=38  Identities=29%  Similarity=0.314  Sum_probs=26.7

Q ss_pred             EeEeecCCCChhHHHHhhhcCCcc-ccCCCCCceeEEEE
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKW  257 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pgtT~~~~~  257 (383)
                      |.|+|-++|||+||++.|..+..- .....+.|||-...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~   44 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKK   44 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC--
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCC
Confidence            789999999999999999854321 22345667776554

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.66  E-value=0.014  Score=51.23  Aligned_cols=23  Identities=13%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      .++++|-.++|||||+|.|+|-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.65  E-value=0.02  Score=47.54  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=21.8

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .+|..|.|+|.|++||||+-..|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3566789999999999999999975

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.014  Score=50.87  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=20.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++++|-.++|||||+|.|.|-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4899999999999999999874

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.012  Score=50.30  Aligned_cols=36  Identities=31%  Similarity=0.246  Sum_probs=26.0

Q ss_pred             EeEeecCCCChhHHHHhhhcCCc-c-ccCCCCCceeEE
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRM-C-PAAPRPGVTRVL  255 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~-~-~v~~~pgtT~~~  255 (383)
                      |.|+|-++||||||+|.|..+.. . ..-..+.|||..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~   42 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP   42 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred             EEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCC
Confidence            78999999999999999986532 1 122445667654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.56  E-value=0.13  Score=42.47  Aligned_cols=72  Identities=10%  Similarity=0.032  Sum_probs=44.1

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH---HHHH-------h-cCCCeEEEE
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQW-------L-GNRKRILVL  154 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~---l~~~-------l-~~k~~ilVl  154 (383)
                      .+..+.+||.......     .....+.+......++.++.++|+..........   +.+.       . .+.|+++|+
T Consensus        44 ~~~~~~l~D~~g~~~~-----~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~  118 (209)
T d1nrjb_          44 DGSGVTLVDFPGHVKL-----RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC  118 (209)
T ss_dssp             GGSSCEEEECCCCGGG-----THHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred             CCeEEEEEecccccch-----hhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence            3455667776533222     1234455556788889999999987544333211   1111       1 267999999


Q ss_pred             EccCCCCH
Q 016762          155 NREDMISM  162 (383)
Q Consensus       155 NK~DL~~~  162 (383)
                      ||+|+...
T Consensus       119 NK~D~~~~  126 (209)
T d1nrjb_         119 NKSELFTA  126 (209)
T ss_dssp             ECTTSTTC
T ss_pred             Eeeccccc
Confidence            99999753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.53  E-value=0.0083  Score=55.46  Aligned_cols=56  Identities=21%  Similarity=0.278  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 016762          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI  160 (383)
Q Consensus       104 Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~~~l~~~l--~~k~~ilVlNK~DL~  160 (383)
                      ||| .++..++...+.-+|.++.|+|+..+....-..+.+..  .+.|+++++||+|..
T Consensus       104 PGh-~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2         104 PGH-VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             CCC-CSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             CCc-HHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            777 67788888889999999999999987665544443332  488999999999953

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.48  E-value=0.021  Score=47.13  Aligned_cols=26  Identities=35%  Similarity=0.569  Sum_probs=21.6

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcC
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +.+.-|.++|.|++||||+...|...
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34556899999999999999999743

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.38  E-value=0.016  Score=50.68  Aligned_cols=22  Identities=14%  Similarity=0.190  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++++|..++|||||+|.|.|-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4899999999999999999974

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.19  E-value=0.018  Score=50.85  Aligned_cols=23  Identities=35%  Similarity=0.314  Sum_probs=20.8

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      .++++|-.++|||||+|.|+|-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            48999999999999999999853

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.15  E-value=0.021  Score=46.04  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      -|.|+|.|++||||+-+.|.++
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=93.11  E-value=0.015  Score=47.16  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +|.++|+|+|||||+-..|..+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.97  E-value=0.022  Score=46.44  Aligned_cols=20  Identities=30%  Similarity=0.630  Sum_probs=17.6

Q ss_pred             EeEeecCCCChhHHHHhhhc
Q 016762          220 AGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~  239 (383)
                      |.|.|.|+|||||+.|.|..
T Consensus         4 ivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999963

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.93  E-value=0.013  Score=50.90  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++++|-.++|||||+|.|.|-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4899999999999999999974

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.92  E-value=0.021  Score=47.26  Aligned_cols=24  Identities=38%  Similarity=0.607  Sum_probs=21.5

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      +.++|.|+|.|++||||+-..|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999984

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.91  E-value=0.021  Score=49.96  Aligned_cols=22  Identities=14%  Similarity=0.179  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++++|-.++|||||++.|.|-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4899999999999999999974

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.022  Score=49.78  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-+++|||||++.|.|-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4899999999999999999974

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=92.83  E-value=0.021  Score=45.84  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=19.1

Q ss_pred             EeEeecCCCChhHHHHhhhcC
Q 016762          220 AGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      |.|.|.|++||||+-+.|..+
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788899999999999999854

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.015  Score=47.97  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      ++..|.++|+|++||||+-+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356689999999999999999974

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.58  E-value=0.023  Score=46.42  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=19.7

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +|.|+|.|++||||+-..|..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999743

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.58  E-value=0.024  Score=50.07  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|-.++|||||++.|.|-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4899999999999999999974

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.42  E-value=0.036  Score=45.88  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=22.6

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhcC
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .+++-|+|-|..+|||||+++.|.+.
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            35677999999999999999999854

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.026  Score=45.48  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=19.0

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .|.|+|-|++|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999999874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.33  E-value=0.028  Score=49.12  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=19.6

Q ss_pred             EeEeecCCCChhHHHHhhhcC
Q 016762          220 AGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ++++|-.++|||||++.|.|-
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCChHHHHHHHHHcC
Confidence            789999999999999999974

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.30  E-value=0.026  Score=46.42  Aligned_cols=22  Identities=23%  Similarity=0.607  Sum_probs=19.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +|.|+|.|++||||+-..|..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=92.28  E-value=0.033  Score=46.42  Aligned_cols=25  Identities=40%  Similarity=0.700  Sum_probs=22.2

Q ss_pred             CceEEeEeecCCCChhHHHHhhhcC
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +.++|.|+|.|++||||+-..|..+
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999853

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.15  E-value=0.021  Score=47.49  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             EeEeecCCCChhHHHHhhhcC
Q 016762          220 AGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      |.|+|-++|||+||++.|..+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.026  Score=44.41  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .|.|+|.|++||||+-..|..+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999854

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.05  E-value=0.11  Score=45.41  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..+.+.|.|++|||++.++|.+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            45899999999999999999853

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=91.93  E-value=0.13  Score=46.65  Aligned_cols=83  Identities=11%  Similarity=0.073  Sum_probs=48.9

Q ss_pred             HhhhcCeEEEEEecCCCCCCCcHHH-HHHhcCCCeEEEEEccCCCCHHHHHHHHHHHHH--------c---CCeEEEeeC
Q 016762          117 QLKLMDVVIEVRDARIPLSTTHPLM-DQWLGNRKRILVLNREDMISMADRNAWATYFAK--------Q---GTKVIFSNG  184 (383)
Q Consensus       117 ~idr~DlILeV~DaR~p~~~~~~~l-~~~l~~k~~ilVlNK~DL~~~~~~~~w~~~l~~--------~---g~~vi~iSa  184 (383)
                      +.+.+|.++.|.+.-.+   .+.+. ...+.+..=++|+||+|+........-...+.+        .   ..+++.+|+
T Consensus       164 i~~~aD~~l~v~~P~~G---d~iq~~k~gi~e~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA  240 (327)
T d2p67a1         164 VARMVDCFISLQIAGGG---DDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSA  240 (327)
T ss_dssp             HHTTCSEEEEEECC---------CCCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBG
T ss_pred             hhhccceEEEEecCCCc---hhhhhhchhhhccccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEe
Confidence            56778888888754221   11110 011112345899999999876543322222221        1   146888999


Q ss_pred             cCCCchhhhhHHHHHhhh
Q 016762          185 QLGMGTMKLSRLAKALAS  202 (383)
Q Consensus       185 ~~g~Gi~~L~~~l~~l~~  202 (383)
                      .+|.|+++|.+.+.++..
T Consensus       241 ~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         241 LEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             GGTBSHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHH
Confidence            999999999888776654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.03  Score=44.93  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=18.9

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      -+.|+|.|++||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999999985

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.049  Score=45.82  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhhc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      |+-|||.|-+++|||||-+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999999974

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.44  E-value=0.041  Score=50.20  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .|.|+|-||+||||++|+|.+.
T Consensus       168 nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEeeccccchHHHHHHhhh
Confidence            4899999999999999999853

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.33  E-value=0.023  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|+|.+++|||||++.|.|-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999974

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.12  E-value=0.11  Score=44.63  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +.-|.++|-|++|||||..+|.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            445889999999999999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.99  E-value=0.035  Score=46.29  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=24.7

Q ss_pred             EeEeecCCCChhHHHHhhhcCCc-cccCCCCCceeE
Q 016762          220 AGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRV  254 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pgtT~~  254 (383)
                      |.|+|-++|||+||.+.|..... ......+.|||.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~   38 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRN   38 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccC
Confidence            67999999999999999975421 112344556654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.95  E-value=0.047  Score=44.59  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      ++|.|+|.|++||||+-+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999974

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=90.90  E-value=0.039  Score=44.81  Aligned_cols=20  Identities=20%  Similarity=0.260  Sum_probs=18.3

Q ss_pred             EeEeecCCCChhHHHHhhhc
Q 016762          220 AGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~  239 (383)
                      |.++|.|++||||+-+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999974

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=0.051  Score=44.84  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhhc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      |+.|.|+|-|++||||+-..|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999974

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.77  E-value=0.045  Score=46.53  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=21.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .+..|.|.|.|++|||||-+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999973

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.58  E-value=0.054  Score=44.37  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=21.0

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .++|.|+|.|++||||+-..|..+
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.40  E-value=0.053  Score=44.31  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ++|.|+|.|++||||+-+.|..+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999853

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=90.25  E-value=0.08  Score=43.56  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.1

Q ss_pred             CceEEeEeecCCCChhHHHHhhhc
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .|+-|||.|.+++||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            366799999999999999999964

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=89.91  E-value=0.13  Score=43.72  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..+.+.|.|++||||+.+++.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999854

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.82  E-value=0.078  Score=43.56  Aligned_cols=105  Identities=10%  Similarity=0.027  Sum_probs=56.7

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC------cH------HHHHHh-----cCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT------HP------LMDQWL-----GNR  148 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~------~~------~l~~~l-----~~k  148 (383)
                      ....+.+||....         +..........+.++.++.++|..+.....      +.      .+...+     .+.
T Consensus        42 ~~~~~~~~D~~gq---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  112 (200)
T d1zcba2          42 KNVPFKMVDVGGQ---------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV  112 (200)
T ss_dssp             TTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred             eeeeeeeecccce---------eeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCc
Confidence            3445556664333         333444445678899999999887644321      11      122222     267


Q ss_pred             CeEEEEEccCCCCHH------------------HHHHHHH----HHHHc-------CCeEEEeeCcCCCchhhhhHHHHH
Q 016762          149 KRILVLNREDMISMA------------------DRNAWAT----YFAKQ-------GTKVIFSNGQLGMGTMKLSRLAKA  199 (383)
Q Consensus       149 ~~ilVlNK~DL~~~~------------------~~~~w~~----~l~~~-------g~~vi~iSa~~g~Gi~~L~~~l~~  199 (383)
                      |+++++||+|+....                  ......+    .|...       .....++||+.+.+++.+-+.+.+
T Consensus       113 piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d  192 (200)
T d1zcba2         113 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  192 (200)
T ss_dssp             EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             eEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHH
Confidence            999999999985321                  1111222    22221       123456899999888876555444

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.62  E-value=0.28  Score=44.31  Aligned_cols=55  Identities=16%  Similarity=0.134  Sum_probs=37.1

Q ss_pred             CeEEEEEccCCCCHHHHHH-----HHHHHHH-------cCCeEEEeeCcCCCchhhhhHHHHHhhhh
Q 016762          149 KRILVLNREDMISMADRNA-----WATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (383)
Q Consensus       149 ~~ilVlNK~DL~~~~~~~~-----w~~~l~~-------~g~~vi~iSa~~g~Gi~~L~~~l~~l~~~  203 (383)
                      .=++|+||+|+.+......     +...+..       ...+++.+|+.+|.|+++|.+.+.++.+.
T Consensus       191 aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         191 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            4589999999876543222     2222211       12568999999999999998887766543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.34  E-value=0.091  Score=44.94  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=19.3

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      -..|.|+-++|||||||.|...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            3689999999999999999853

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=89.32  E-value=0.11  Score=45.30  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .-|.+.|-|++|||+|.++|.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35899999999999999999854

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.66  E-value=0.12  Score=42.79  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.8

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      -|+|-|..++||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.57  E-value=0.12  Score=42.54  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..|.|+|.|++||||+-..|..+
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999999753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.43  E-value=0.24  Score=43.08  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .-|.+.|.|++|||++.+++.+.
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            34899999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.18  E-value=0.21  Score=41.88  Aligned_cols=47  Identities=21%  Similarity=0.376  Sum_probs=31.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEEEeCCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~i~l~DTpG~i~  274 (383)
                      .+.+||-|+||||+++..|..+  ...++.|-.-++       ..++-+|+-.++.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r--i~~~~vp~~L~~-------~~i~~ld~~~LiA   91 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKG-------RRVLALDMGALVA   91 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH--HHHTCSCGGGTT-------CEEEEECHHHHHT
T ss_pred             CeEEEecCCcccHHHHHHHHHH--HHhCCCCHHHcC-------ceEEEeeHHHHhc
Confidence            5789999999999999999853  223444433332       3455566666653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=87.15  E-value=0.25  Score=42.05  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=20.1

Q ss_pred             ceEEeEeecCCCChhHHHHhhhc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      +..+.|.|.||+||||+.+.|..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999974

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.01  E-value=0.23  Score=42.95  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      +..|.+.|-|++|||++.++|.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            345899999999999999999854

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=86.75  E-value=0.048  Score=44.26  Aligned_cols=19  Identities=21%  Similarity=0.371  Sum_probs=17.3

Q ss_pred             EeEeecCCCChhHHHHhhh
Q 016762          220 AGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~  238 (383)
                      ..|+|-.|+|||||+.+|.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4689999999999999985

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.44  E-value=0.16  Score=41.73  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             ceEEeEeecCCCChhHHHHhhhcC
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ...|.|+|-|++||||+-..|..+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999999853

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.32  E-value=0.23  Score=41.81  Aligned_cols=21  Identities=24%  Similarity=0.200  Sum_probs=19.3

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .+.+.|-||+|||++.++|.+
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            689999999999999999874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=85.86  E-value=0.23  Score=43.71  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.4

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .+.+||-|+||||+++..|..
T Consensus        41 n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHH
Confidence            578999999999999999985

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=85.43  E-value=0.19  Score=42.88  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .|.|.|.+++|||||++.+..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999998863

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.38  E-value=0.28  Score=39.54  Aligned_cols=108  Identities=12%  Similarity=0.024  Sum_probs=62.2

Q ss_pred             cccCCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc------H------HHHHHh-----
Q 016762           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------P------LMDQWL-----  145 (383)
Q Consensus        83 ~~~~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~~------~------~l~~~l-----  145 (383)
                      +...+..+-+||...+         .+...........++.++.|+|..+..+...      .      .+...+     
T Consensus        37 ~~~~~~~~~i~D~~Gq---------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~  107 (195)
T d1svsa1          37 FTFKDLHFKMFDVGGQ---------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  107 (195)
T ss_dssp             EEETTEEEEEEEECCS---------GGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred             EEeeeeeeeeeccccc---------cccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhccccc
Confidence            3445566778885443         3334444467899999999998865443321      1      112222     


Q ss_pred             cCCCeEEEEEccCCCCHH-----------------HHHHHHH----HHHHc-------CCeEEEeeCcCCCchhhhhHHH
Q 016762          146 GNRKRILVLNREDMISMA-----------------DRNAWAT----YFAKQ-------GTKVIFSNGQLGMGTMKLSRLA  197 (383)
Q Consensus       146 ~~k~~ilVlNK~DL~~~~-----------------~~~~w~~----~l~~~-------g~~vi~iSa~~g~Gi~~L~~~l  197 (383)
                      ...|++++.||+|+....                 .......    .+...       ...++++||+.|.+++++-+.+
T Consensus       108 ~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v  187 (195)
T d1svsa1         108 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV  187 (195)
T ss_dssp             TTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHH
Confidence            256899999999863211                 1111111    22211       1235578999999998875555


Q ss_pred             HH
Q 016762          198 KA  199 (383)
Q Consensus       198 ~~  199 (383)
                      .+
T Consensus       188 ~~  189 (195)
T d1svsa1         188 TD  189 (195)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=85.33  E-value=0.26  Score=44.26  Aligned_cols=25  Identities=28%  Similarity=0.201  Sum_probs=21.9

Q ss_pred             CCceEEeEeecCCCChhHHHHhhhc
Q 016762          215 PRAVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       215 ~~~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      ..++-|||.|-+++||||+-+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4577899999999999999999863

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.07  E-value=0.13  Score=41.90  Aligned_cols=106  Identities=9%  Similarity=-0.006  Sum_probs=60.5

Q ss_pred             CCCcEEEEcCCCCCcCCCchHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC------c------HHHHHHh-----cCC
Q 016762           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT------H------PLMDQWL-----GNR  148 (383)
Q Consensus        86 ~~~~~vi~~~~L~~~qw~Pgh~~~~~~~l~~~idr~DlILeV~DaR~p~~~~------~------~~l~~~l-----~~k  148 (383)
                      ....+-+||......         ...........++.++.++|..+.....      +      ..+...+     .+.
T Consensus        43 ~~~~~~~~d~~g~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~  113 (200)
T d2bcjq2          43 QSVIFRMVDVGGQRS---------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS  113 (200)
T ss_dssp             SSCEEEEEECCCSTT---------GGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSS
T ss_pred             cceeeeecccccccc---------ccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCc
Confidence            445566777544432         2333335678999999999986543211      1      1122222     267


Q ss_pred             CeEEEEEccCCCCHHH------------------HH----HHHHHHHHcC------CeEEEeeCcCCCchhhhhHHHHHh
Q 016762          149 KRILVLNREDMISMAD------------------RN----AWATYFAKQG------TKVIFSNGQLGMGTMKLSRLAKAL  200 (383)
Q Consensus       149 ~~ilVlNK~DL~~~~~------------------~~----~w~~~l~~~g------~~vi~iSa~~g~Gi~~L~~~l~~l  200 (383)
                      |.+++.||+|+.....                  ..    .....+....      ..++++||++|.++.++-+.+.+.
T Consensus       114 ~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~  193 (200)
T d2bcjq2         114 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  193 (200)
T ss_dssp             EEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHH
Confidence            8999999999743221                  00    1111222211      235678999999998876665543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.98  E-value=0.24  Score=41.67  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=18.3

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      -|+|-|..||||||+++.|..
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388889999999999888864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.90  E-value=0.37  Score=41.09  Aligned_cols=20  Identities=30%  Similarity=0.493  Sum_probs=17.5

Q ss_pred             EeEeecCCCChhHHHHhhhc
Q 016762          220 AGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~  239 (383)
                      +.+.|-|++||||+++++.+
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            45679999999999999974

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=84.61  E-value=0.2  Score=41.90  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.5

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      -|||+|.+++||||+.|.|...
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            4899999999999999998743

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=84.45  E-value=0.27  Score=41.66  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             ceEEeEeecCCCChhHHHHhhh
Q 016762          217 AVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      +..|++||-|+|||||.+-.|.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999999986

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=84.41  E-value=0.53  Score=38.64  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      -|.|.|.+++||||+...|..+.
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            38999999999999999998654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.01  E-value=0.59  Score=39.50  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..+.+.|-||+||||+..+|.+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999863

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.85  E-value=0.24  Score=41.66  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .|+|-|..+|||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999985

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=83.79  E-value=0.25  Score=41.14  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=18.3

Q ss_pred             EeEeecCCCChhHHHHhhhc
Q 016762          220 AGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~~  239 (383)
                      |+|-|..++||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999999874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=83.67  E-value=0.46  Score=39.98  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      .+.+.|-||+||||+.+.|.+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            4789999999999999999853

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.02  E-value=0.34  Score=40.93  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             ceEEeEeecCCCChhHHHHhhhc
Q 016762          217 AVRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      |.-|+|=|.-+|||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34589999999999999999974

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=82.93  E-value=0.27  Score=40.18  Aligned_cols=50  Identities=26%  Similarity=0.195  Sum_probs=31.6

Q ss_pred             EEeEeecCCCChhHHHHhhhcCCccccCCCCCceeEEEEE-EeCCcEEEEecCcccc
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV-RFGKDLEFLDSPGIIP  274 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pgtT~~~~~~-~~~~~i~l~DTpG~i~  274 (383)
                      -|.|.|.+++||||+.-.|..+...      ..|=|...+ +.+.+.++.-+|..+.
T Consensus        17 gvli~G~sg~GKS~la~~l~~~g~~------li~DD~~~~~~~~~~~l~~~~p~~l~   67 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKRGHR------LVADDNVEIREISKDELIGRAPKLIE   67 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTTCE------EEESSEEEEEESSSSCEEEECCGGGT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCCe------EEeCCeEEEEEecCCEEEecCCcccc
Confidence            4899999999999999888865432      233343333 2344445555555543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=82.85  E-value=0.34  Score=40.84  Aligned_cols=22  Identities=32%  Similarity=0.374  Sum_probs=18.9

Q ss_pred             ceEEeEeecCCCChhHHHHhhh
Q 016762          217 AVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       217 ~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      +..|++||-|+|||+|.+=.|.
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3458999999999999988875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.55  E-value=0.24  Score=43.53  Aligned_cols=19  Identities=37%  Similarity=0.571  Sum_probs=17.1

Q ss_pred             EeEeecCCCChhHHHHhhh
Q 016762          220 AGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       220 v~lvG~pNvGKSTLiN~L~  238 (383)
                      -.|||-.|+||||+|.||.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            4799999999999999983

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=81.57  E-value=0.37  Score=40.76  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=15.8

Q ss_pred             CceEEeEeecCCCChhHHHHhhh
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      .+..|++||-|+|||+|.+=.|.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35568999999999999988886

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.56  E-value=0.65  Score=38.86  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=19.1

Q ss_pred             EEeEeecCCCChhHHHHhhhc
Q 016762          219 RAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .+.|.|-||+||||++.+|.+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999975

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.33  E-value=0.48  Score=41.98  Aligned_cols=23  Identities=17%  Similarity=0.017  Sum_probs=19.9

Q ss_pred             CceEEeEeecCCCChhHHHHhhh
Q 016762          216 RAVRAGIVGYPNVGKSSLINRLL  238 (383)
Q Consensus       216 ~~~~v~lvG~pNvGKSTLiN~L~  238 (383)
                      .++-|||.|-+++|||||-+.|.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHH
Confidence            57779999999999999887763

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=81.08  E-value=0.28  Score=40.40  Aligned_cols=23  Identities=35%  Similarity=0.367  Sum_probs=20.2

Q ss_pred             EEeEeecCCCChhHHHHhhhcCC
Q 016762          219 RAGIVGYPNVGKSSLINRLLKRR  241 (383)
Q Consensus       219 ~v~lvG~pNvGKSTLiN~L~~~~  241 (383)
                      -|.|.|.+++||||+.-.|..+.
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            38999999999999999988654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=80.88  E-value=0.35  Score=40.22  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             eEEeEeecCCCChhHHHHhhhc
Q 016762          218 VRAGIVGYPNVGKSSLINRLLK  239 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~  239 (383)
                      .-|||.|-+++||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998863

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.77  E-value=0.39  Score=41.85  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.5

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..|.+.|.|++|||+|.++|.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            35899999999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.09  E-value=0.88  Score=39.62  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=19.7

Q ss_pred             eEEeEeecCCCChhHHHHhhhcC
Q 016762          218 VRAGIVGYPNVGKSSLINRLLKR  240 (383)
Q Consensus       218 ~~v~lvG~pNvGKSTLiN~L~~~  240 (383)
                      ..|+|+|+.++|||||...+.++
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999888643