Citrus Sinensis ID: 016774

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
MMMTTVPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHcccccEEEEEEEccccccccccccccEEEEEccEEEEEEcccccccccccEEEEEcccccEEEEEEEcccccccccccccEEEEEccEEEEEccccccccccccEEEEEcccccccccccEEEEEEccccccccccccEEEEEcccEEEEEEEccccccccccEEEEEcccccccccEEEEccccccccccccEEEEEcccEEEEEccccccccEEcEEEEEEcccccEEEEEccEEcccccccccccccccEEEEEEccEEEEEEcccccccccccEEEEEcccccccccccccccccccccccEEEEEcccccccccccccEEEEccccEEEEEccccccccccccEEEEEEcccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHEEcccHHHHEcccccccccccccccccEEEEEccEEEEEEcccccccccccccEEEEEcccccccEEccccccccccccccEEEEEccEEEEEEcccccccccccEEEEEcccccccccccEEEEEcccccccccccccEEEEEcccEEEEEEcccccccccccEEEEEccccccccEEEEcccccccccccccEEEEEEccEEEEEEcccccccccccEEEEEcccccEEEEEEccccccccccccccccccEEEEEcccEEEEEEcccccccccccEEEEEccccccccccccccccccccccEEEccccccccccccccccEEEEEcccEEEEEEccccccccccccccEEccccccEEEEEEcc
Coil and Loop (DISEMBL)
mmmttvpwMRLYRQVTQLESVScrnisdadgdlvlpnprashslnfVSNCLVlfgggceggrhlddTWVAYVGNDFQGMLKWQkvnsgipsgrfghtcvVIGDCLVlfggindrgnrhndtwigqiachenlgITLSWRlldvgsiappargahaaccidNRKMVIHAGIGLYGLRLGDTWVLELSEnfcfgswqqlvthpspparsghsltriggnrtvlfggrgvgyevLNDVWFLDVYEGFFKWVQIpyelqnipagfslprvghsatliLGGRVliyggedsarrrkddfwvldtkaipftSVQQSMLDSRGLLLNMWKRLRaegykpncrsfhracpdysgryLYVFGGmvdglvqpadtsglrfdgRLLLVELVPLL
Flexible Loop (DISEMBL)
mmmttvpwmRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTkaipftsvqqsmlDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADtsglrfdgRLLLVELVPLL
Low Complexity Region (SEG)
MMMTTVPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRlllvelvpll
Disordered region (IsUnstruct)
****TVPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTH**********LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV***
Disordered Region (DISOPRED)
********MRLYRQVTQLESVSCRNISDA****VLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKW******IPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI*************PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLL**WKR***EGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL
Disordered Region (DISEMBL)
MMMTTVPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL
Disordered Region (DISPRO)
*MMTTVPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMMTTVPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
Q9C8K7	478	F-box/kelch-repeat protei	yes	no	0.950	0.761	0.627	1e-130
Q8W420	611	Adagio protein 2 OS=Arabi	no	no	0.825	0.517	0.299	5e-26
Q94BT6	609	Adagio protein 1 OS=Arabi	no	no	0.733	0.461	0.309	4e-25
Q2R2W1	630	Adagio-like protein 3 OS=	no	no	0.731	0.444	0.312	8e-25
Q5Z8K3	630	Adagio-like protein 1 OS=	no	no	0.718	0.436	0.312	1e-23
Q67UX0	635	Putative adagio-like prot	no	no	0.725	0.437	0.309	1e-23
Q9C9W9	619	Adagio protein 3 OS=Arabi	no	no	0.733	0.453	0.302	2e-23
Q7M3S9	943	RING finger protein B OS=	yes	no	0.571	0.232	0.307	7e-20
Q39610	4499	Dynein alpha chain, flage	N/A	no	0.496	0.042	0.276	1e-13
P87061	1147	Tip elongation aberrant p	yes	no	0.652	0.217	0.290	5e-13

>sp|Q9C8K7|FBK21_ARATH F-box/kelch-repeat protein At1g51550 OS=Arabidopsis thaliana GN=At1g51550 PE=2 SV=1

 Score =  465 bits (1196), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/384 (62%), Positives = 289/384 (75%), Gaps = 20/384 (5%)

Query: 8   WMRLYRQVTQLESVSCRNISDADGDLV----LPNPRASHSLNFVSNCLVLFGGGCEGGRH 63
           WM ++++V +++SV C  ISD D D       P PRASHSLNFV++ LVLFGGGC+GGRH
Sbjct: 88  WMLMFQRVYKMDSVCCHKISDPDDDDEESSSFPIPRASHSLNFVNDHLVLFGGGCQGGRH 147

Query: 64  LDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWI 123
           LDDTW +YV    Q +LKW+KV SG PSGRFGHTC+VIG+ L+LFGGINDRG R NDTWI
Sbjct: 148 LDDTWTSYVDKSNQSILKWKKVKSGTPSGRFGHTCIVIGEYLLLFGGINDRGERLNDTWI 207

Query: 124 GQIACHENLGITLSWRLLDVGSIA---PPARGAHAACCIDNRKMVIHAGIGLYGLRLGDT 180
           GQ+ CHE     LSW+LL+VGS+    PP RGAH+ACCI  +KMV+H GIGL G+RLGDT
Sbjct: 208 GQVFCHEG----LSWKLLNVGSLQRPRPPPRGAHSACCIAEKKMVVHGGIGLNGVRLGDT 263

Query: 181 WVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDV 240
           W+LELSE+F  G+W  + +   PP RSGH+LT I  N+ VLFGGRG+GY+VL+DVW LD+
Sbjct: 264 WILELSEDFSSGTWHMVESPQLPPPRSGHTLTCIRENQVVLFGGRGLGYDVLDDVWILDI 323

Query: 241 YEGF-FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDT 299
            E    KW+QI Y+ Q++P   SLPRVGHSATL+LGGR+LIYGGEDS R RKDDFWVLD 
Sbjct: 324 QEPCEEKWIQIFYDFQDVPEYASLPRVGHSATLVLGGRILIYGGEDSYRHRKDDFWVLDV 383

Query: 300 KAIPFTSVQQSMLDSRGLLLN---MWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 356
           K IP      S L  +GL LN   +WK+L    Y P  RSFHRAC D SGR+LYVFGGMV
Sbjct: 384 KTIP-----SSGLKPQGLSLNGSSVWKKLDRISYGPKSRSFHRACADCSGRFLYVFGGMV 438

Query: 357 DGLVQPADTSGLRFDGRLLLVELV 380
           DGL+QPA +SGLRFDG L +VELV
Sbjct: 439 DGLLQPAASSGLRFDGELFMVELV 462

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W420|ADO2_ARATH Adagio protein 2 OS=Arabidopsis thaliana GN=ADO2 PE=1 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 166/357 (46%), Gaps = 41/357 (11%)

Query: 8   WMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDT 67
           W+RL R+ T  E+ + R  S   G  V P+ R + S   V N +V+FGG     + ++DT
Sbjct: 266 WVRLAREFTTHEATAWRKFSV--GGTVEPS-RCNFSACAVGNRIVIFGGEGVNMQPMNDT 322

Query: 68  WVAYVGNDFQGMLKWQKV-NSGIPSGRFGHT-CVVIGDCLVLFGGINDRGNRHNDTWIGQ 125
           +V  +G+      +W+ V  S  P GR+GHT   V G  LV+FGG    G   ND ++  
Sbjct: 323 FVLDLGSSSP---EWKSVLVSSPPPGRWGHTLSCVNGSRLVVFGGYGSHG-LLNDVFLLD 378

Query: 126 IACHENLGITLSWRLLDVGSIAPP-ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLE 184
           +          SWR  +V  +APP  R  H++C +D  K+++  G    G  L DT++L+
Sbjct: 379 LDADPP-----SWR--EVSGLAPPIPRSWHSSCTLDGTKLIVSGGCADSGALLSDTFLLD 431

Query: 185 LSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGG---RGVGYEVLNDVWFLDVY 241
           LS +    +W+++    +PP+R GH+LT  G  + ++FGG    G      NDV+ +D+ 
Sbjct: 432 LSMD--IPAWREIPVPWTPPSRLGHTLTVYGDRKILMFGGLAKNGTLRFRSNDVYTMDLS 489

Query: 242 EGFFKWVQIPYELQNIPAGFSL--PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDT 299
           E    W  +     ++P G +   PR+ H A  + GGR+LI+GG  +        ++LD 
Sbjct: 490 EDEPSWRPVIGYGSSLPGGMAAPPPRLDHVAISLPGGRILIFGGSVAGLDSASQLYLLDP 549

Query: 300 KAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 356
                                 W+ L  +G  P     H  C    G  L V GG  
Sbjct: 550 NE----------------EKPAWRILNVQGGPPRFAWGHTTC-VVGGTRLVVLGGQT 589

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO2) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms. APRR1 and APRR5 seem to be substrates of the SCF(ADO1) complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94BT6|ADO1_ARATH Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 160/313 (51%), Gaps = 32/313 (10%)

Query: 2   MMTTVP------WMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFG 55
           ++ TVP      W RL R++T LE+ + R +S   G  V P+ R + S   V N +VLFG
Sbjct: 253 VLETVPGAKRLGWGRLARELTTLEAAAWRKLSV--GGSVEPS-RCNFSACAVGNRVVLFG 309

Query: 56  GGCEGGRHLDDTWVAYVGNDFQGMLKWQKVN-SGIPSGRFGHTCVVI-GDCLVLFGGIND 113
           G     + ++DT+V  + +D+    +WQ V  S  P GR+GHT   + G  LV+FGG   
Sbjct: 310 GEGVNMQPMNDTFVLDLNSDYP---EWQHVKVSSPPPGRWGHTLTCVNGSNLVVFGGCGQ 366

Query: 114 RGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPP-ARGAHAACCIDNRKMVIHAGIGL 172
           +G   ND ++  +          +WR  ++  +APP  R  H++C +D  K+++  G   
Sbjct: 367 QG-LLNDVFVLNLDAKPP-----TWR--EISGLAPPLPRSWHSSCTLDGTKLIVSGGCAD 418

Query: 173 YGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVL 232
            G+ L DT++L+LS       W+++    +PP+R GH+L+  GG + ++FGG      + 
Sbjct: 419 SGVLLSDTFLLDLSIEKPV--WREIPAAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLK 476

Query: 233 ---NDVWFLDVYEGFFKWVQIP---YELQNIPAGFSLP-RVGHSATLILGGRVLIYGGED 285
              +DV+ +D+ E    W  +          P G + P R+ H A  + GGR+LI+GG  
Sbjct: 477 FRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGVAPPPRLDHVAVNLPGGRILIFGGSV 536

Query: 286 SARRRKDDFWVLD 298
           +        ++LD
Sbjct: 537 AGLHSASQLYLLD 549

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO1) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms. APRR1 and APRR5 seem to be substrates of the SCF(ADO1) complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R2W1|ADO3_ORYSJ Adagio-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0547000 PE=2 SV=2

 Score =  115 bits (287), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 152/304 (50%), Gaps = 24/304 (7%)

Query: 1   MMMTTVPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEG 60
           M    + W RL R++T LE+ S R  +   G  V P+ R + S   V N LVLFGG    
Sbjct: 282 MSTKMLGWGRLARELTTLEAASWRKFTV--GGRVEPS-RCNFSACAVGNRLVLFGGEGVN 338

Query: 61  GRHLDDTWVAYVGNDFQGMLKWQKVN-SGIPSGRFGHTCVVI-GDCLVLFGGINDRGNRH 118
            + +DDT   +V N      +W++V  S  P GR+GHT   + G  LV+FGG   +G   
Sbjct: 339 MQPMDDT---FVLNLESAKPEWRRVKVSASPPGRWGHTLSWLNGSWLVVFGGCGQQG-LL 394

Query: 119 NDTWIGQIACHENLGITLSWRLLDVGSIAPP-ARGAHAACCIDNRKMVIHAGIGLYGLRL 177
           ND ++  +   +      +WR  +V S  PP  R  H++C +D  K+V+  G    G+ L
Sbjct: 395 NDVFVLDLDAKQP-----TWR--EVASEGPPLPRSWHSSCTLDGSKLVVSGGCTESGVLL 447

Query: 178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVL---ND 234
            DT++L+L++     +W+++ T  SPP+R GH+L+  G  +  +FGG      +     D
Sbjct: 448 SDTFLLDLTKEK--PAWKEIPTSWSPPSRLGHTLSVFGKTKLFMFGGLAKSGSLRLRSCD 505

Query: 235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDF 294
            + +D  E   +W Q+       P+    PR+ H A  +  GR++I+GG  +        
Sbjct: 506 AYTMDAGEDSPQWRQL--ATTGFPSIGPPPRLDHVAVSLPCGRIIIFGGSIAGLHSPSQL 563

Query: 295 WVLD 298
           ++LD
Sbjct: 564 FLLD 567

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO3) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Z8K3|ADO1_ORYSJ Adagio-like protein 1 OS=Oryza sativa subsp. japonica GN=Os06g0694000 PE=2 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 155/301 (51%), Gaps = 26/301 (8%)

Query: 8   WMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDT 67
           W RL R++T LE+V+ R ++   G  V P+ R + S   V N +VLFGG     + ++DT
Sbjct: 286 WGRLARELTTLEAVAWRKLTV--GGAVEPS-RCNFSACAVGNRVVLFGGEGVNMQPMNDT 342

Query: 68  WVAYVGNDFQGMLKWQKVN-SGIPSGRFGHTCVVI-GDCLVLFGGINDRGNRHNDTWIGQ 125
           +V  +        +W+ VN S  P GR+GHT   + G  LV+FGG   +G   ND +   
Sbjct: 343 FVLDLNASNP---EWRHVNVSSAPPGRWGHTLSCLNGSLLVVFGGCGRQG-LLNDVFTLD 398

Query: 126 IACHENLGITLSWRLLDVGSIAPPA-RGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLE 184
           +   +      +WR  ++  +APP  R  H++C +D  K+V+  G    G+ L DT++L+
Sbjct: 399 LDAKQP-----TWR--EIPGVAPPVPRSWHSSCTLDGTKLVVSGGCADSGVLLSDTYLLD 451

Query: 185 LSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVL---NDVWFLDVY 241
           ++ +     W+++    +PP+R GHS++  GG + ++FGG      +    +DV+ +D+ 
Sbjct: 452 VTMDKPV--WREVPASWTPPSRLGHSMSVYGGRKILMFGGLAKSGPLRLRSSDVFTMDLS 509

Query: 242 EGFFKWVQIP---YELQNIPAGF-SLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVL 297
           E    W  +          PAG    PR+ H A  + GGRVLI+GG  +        ++L
Sbjct: 510 EEEPCWRCLTGSGMPGAGNPAGAGPPPRLDHVAVSLPGGRVLIFGGSVAGLHSASQLYLL 569

Query: 298 D 298
           D
Sbjct: 570 D 570

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q67UX0|ADO2_ORYSJ Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0150800 PE=3 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 154/304 (50%), Gaps = 26/304 (8%)

Query: 5   TVPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHL 64
           ++ W RL R++T LE+V+ R ++   G  V P+ R + S     N +VLFGG     + +
Sbjct: 276 SLAWGRLARELTTLEAVTWRKLTV--GGAVEPS-RCNFSACAAGNRVVLFGGEGVNMQPM 332

Query: 65  DDTWVAYVGNDFQGMLKWQKVN-SGIPSGRFGHTCVVI-GDCLVLFGGINDRGNRHNDTW 122
           +DT+V  +        +W+ +N    P GR+GHT   + G  LVLFGG   +G   ND +
Sbjct: 333 NDTFVLDLN---ASKPEWRHINVRSAPPGRWGHTLSCLNGSRLVLFGGCGRQG-LLNDVF 388

Query: 123 IGQIACHENLGITLSWRLLDVGSIAPPA-RGAHAACCIDNRKMVIHAGIGLYGLRLGDTW 181
           +  +   +      +WR  ++  +APP  R  H++C +D  K+V+  G    G+ L DT+
Sbjct: 389 MLDLDAQQP-----TWR--EIPGLAPPVPRSWHSSCTLDGTKLVVSGGCADSGVLLSDTY 441

Query: 182 VLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVL---NDVWFL 238
           +L+++       W+++    +PP R GHSL+   G + ++FGG      +    NDV+ L
Sbjct: 442 LLDVTMERPV--WREIPASWTPPCRLGHSLSVYDGRKILMFGGLAKSGPLRLRSNDVFTL 499

Query: 239 DVYEGFFKWVQIP---YELQNIPAGF-SLPRVGHSATLILGGRVLIYGGEDSARRRKDDF 294
           D+ E    W  I        + PAG    PR+ H A  + GGR+LI+GG  +        
Sbjct: 500 DLSENKPCWRCITGSGMPGASNPAGVGPPPRLDHVAVSLPGGRILIFGGSVAGLHSASKL 559

Query: 295 WVLD 298
           ++LD
Sbjct: 560 YLLD 563

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C9W9|ADO3_ARATH Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 PE=1 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 156/304 (51%), Gaps = 23/304 (7%)

Query: 1   MMMTTVPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEG 60
           +M   + W RL R++T LE+V  R  +   G +V P+ R + S   V N LVLFGG    
Sbjct: 270 IMTKKLRWGRLARELTTLEAVCWRKFTV--GGIVQPS-RCNFSACAVGNRLVLFGGEGVN 326

Query: 61  GRHLDDTWVAYVGNDFQGMLKWQKVN-SGIPSGRFGHTCVVI-GDCLVLFGGINDRGNRH 118
            + LDDT+V  +  +     +WQ+V  +  P GR+GHT   + G  LV+FGG   +G   
Sbjct: 327 MQPLDDTFVLNLDAECP---EWQRVRVTSSPPGRWGHTLSCLNGSWLVVFGGCGRQG-LL 382

Query: 119 NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLG 178
           ND ++  +          +W+ +  G   P  R  H++C I+  K+V+  G    G+ L 
Sbjct: 383 NDVFVLDLDAKHP-----TWKEV-AGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLS 436

Query: 179 DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGG-RGVGYEVLN--DV 235
           DT++L+L+ +    +W+++ T  +PP+R GHSL+  G  + ++FGG    G+  L   + 
Sbjct: 437 DTFLLDLTTDK--PTWKEIPTSWAPPSRLGHSLSVFGRTKILMFGGLANSGHLKLRSGEA 494

Query: 236 WFLDVYEGFFKWVQIPYELQNIP-AGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDF 294
           + +D+ +   +W ++  E    P      PR+ H A  +  GRV+I+GG  +        
Sbjct: 495 YTIDLEDEEPRWREL--ECSAFPGVVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQL 552

Query: 295 WVLD 298
           +++D
Sbjct: 553 FLID 556

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO3) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2

 Score = 98.6 bits (244), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 118/257 (45%), Gaps = 38/257 (14%)

Query: 41  SHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVV 100
           S S  +  +  ++F GG    +   D  + YV ++   +  W++V +    GR GHT VV
Sbjct: 78  SQSRPYSDSYQIIFFGGRATSKPFSDINILYVNSNRSFI--WKQVTTKSIEGRAGHTAVV 135

Query: 101 IGDCLVLFGGINDRGNRH-NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCI 159
               LV+FGG N+  +++ N   +  +  +E       WR    G + P AR  H+   +
Sbjct: 136 YRQNLVVFGGHNNHKSKYYNSVLLFSLESNE-------WRQQVCGGVIPSARATHSTFQV 188

Query: 160 DNRKMVIHAGIG-------LYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPA-RSGHSL 211
           +N KM I  G         +Y L L +TW+           W+++    +PP  RSGHS 
Sbjct: 189 NNNKMFIFGGYDGKKYYNDIYYLDL-ETWI-----------WKKVEAKGTPPKPRSGHSA 236

Query: 212 TRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGF--FKWVQIPYELQNIPAGFSLPRVGHS 269
           T I  N+ ++FGG G     LND+  L + EG   ++W Q  Y    IP      R  H+
Sbjct: 237 TMIQNNKLMIFGGCGSDSNFLNDIHILHI-EGANEYRWEQPSYLGLEIPQA----RFRHT 291

Query: 270 ATLILGGRVLIYGGEDS 286
              I GGRV IY G  S
Sbjct: 292 TNFI-GGRVYIYAGTGS 307

Dictyostelium discoideum (taxid: 44689)

>sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm OS=Chlamydomonas reinhardtii GN=ODA11 PE=3 SV=2

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 23/213 (10%)

Query: 90  PSGRFGHTCVVIGDCLVLFGGINDRGNR---HNDTWIGQIACHENLGITLSWRLLDVGSI 146
           P  R GH+  V+G+  VLFGG   +  +    ND +    +  +       W+ L V + 
Sbjct: 15  PCPRSGHSFTVLGERFVLFGGCGRKDGKAAAFNDLYELDTSDPDEY----KWKELVVAN- 69

Query: 147 APPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPAR 206
           APP R  HAA  +D++++++  G+    +R  D W+     N+   SW  +    + P  
Sbjct: 70  APPPRARHAAIALDDKRLLVFGGLN-KRIRYNDVWLF----NYDDKSWTCMEVEGAAPEP 124

Query: 207 SGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRV 266
             H      G+R  +FGG G   +V N++W L   E  F+W  I    ++I      PR 
Sbjct: 125 RAHFTATRFGSRVFIFGGYGGSGQVYNEMWVLHFGEDGFRWQNI---TESIEGTGPAPRF 181

Query: 267 GHSATLI-------LGGRVLIYGGEDSARRRKD 292
            HSA +           ++LI GG D ++  +D
Sbjct: 182 DHSAFIYPVTPNSDTYDKLLIMGGRDLSQMYQD 214

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P87061|TEA1_SCHPO Tip elongation aberrant protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea1 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 123/286 (43%), Gaps = 36/286 (12%)

Query: 36  PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNS--GIPSGR 93
           P+PR  H+   + N  ++FGG              Y+ N     L WQK N+    PSGR
Sbjct: 131 PSPRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLN--TSSLVWQKANASGARPSGR 188

Query: 94  FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHE--NLGITLS-WRLLDVGSIAPPA 150
           +GHT   +G  + LFGG      R  D +   + C +  NL  + S W L  V +  PPA
Sbjct: 189 YGHTISCLGSKICLFGG------RLLDYYFNDLVCFDLNNLNTSDSRWELASVVNDPPPA 242

Query: 151 RGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTH-PSPPARSGH 209
           R  H A    + K+ I  G         D W     +     +W ++ T   +P  R+GH
Sbjct: 243 RAGHVAFTFSD-KLYIFGGTDGANF-FNDLWCYHPKQ----SAWSKVETFGVAPNPRAGH 296

Query: 210 SLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHS 269
           + + + G   V FGGR      LND++   +      W    Y+L ++P   S PR  H 
Sbjct: 297 AASVVEGILYV-FGGRASDGTFLNDLYAFRLSSKH--W----YKLSDLPFTPS-PRSSH- 347

Query: 270 ATLILGGRVLIY-GGEDSARRRKDDFWVLDTK-----AIPFTSVQQ 309
            TL   G  L+  GG+        + ++LDT      ++P TS +Q
Sbjct: 348 -TLSCSGLTLVLIGGKQGKGASDSNVYMLDTSRFRLGSVPTTSGRQ 392

Cell polarity protein. Acts as an end marker, directing the growth machinery to the cell poles. Involved in the regulation of microtubular organization, affecting the maintenance of a single central axis. Prevents the curling of microtubule tips around the cell ends and is required for the retention of polarity factors such as pom1, tip1 and tea2 at the cell ends, necessary for the cell to grow in a straight line. Links tip1 and tea4 in a common complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
224109986	469	predicted protein [Populus trichocarpa]	0.973	0.795	0.752	1e-162
147799808	473	hypothetical protein VITISV_029196 [Viti	0.979	0.792	0.728	1e-162
224100511	475	predicted protein [Populus trichocarpa]	0.976	0.787	0.738	1e-162
225443349	473	PREDICTED: F-box/kelch-repeat protein At	0.979	0.792	0.726	1e-161
255555596	462	ubiquitin-protein ligase, putative [Rici	0.971	0.805	0.729	1e-159
356522260	498	PREDICTED: F-box/kelch-repeat protein At	0.971	0.746	0.693	1e-157
356526302	459	PREDICTED: F-box/kelch-repeat protein At	0.937	0.782	0.665	1e-145
297852882	477	hypothetical protein ARALYDRAFT_474268 [	0.950	0.763	0.625	1e-129
18403574	478	F-box/kelch-repeat protein [Arabidopsis	0.950	0.761	0.627	1e-128
51968990	476	unknown protein [Arabidopsis thaliana] g	0.950	0.764	0.627	1e-128

>gi|224109986|ref|XP_002315377.1| predicted protein [Populus trichocarpa] gi|222864417|gb|EEF01548.1| predicted protein [Populus trichocarpa]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 282/375 (75%), Positives = 316/375 (84%), Gaps = 2/375 (0%)

Query: 6   VPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLD 65
           +PWMRLY+QV+QL+SVSC  +SD D +L+LP PRASH LNFVS+CLVLFGGGCEGGR LD
Sbjct: 87  LPWMRLYKQVSQLDSVSCHKLSDPDSELMLPTPRASHCLNFVSDCLVLFGGGCEGGRDLD 146

Query: 66  DTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQ 125
           DTWVAY+GNDFQ MLKWQKVNSGIP+GRFGH C+VIGD LVLFGGINDRG R NDTW+G+
Sbjct: 147 DTWVAYIGNDFQRMLKWQKVNSGIPNGRFGHACIVIGDYLVLFGGINDRGIRQNDTWVGK 206

Query: 126 IACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLEL 185
           +   ENLGITLSWRLLDV SIAPP RGAHAACCID   MVIH GIGLYGLR+GDTW+LEL
Sbjct: 207 VVLSENLGITLSWRLLDVRSIAPPPRGAHAACCIDKSTMVIHGGIGLYGLRMGDTWILEL 266

Query: 186 SENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFF 245
           SENFC G+W++LVTHPSPPARSGH+LT I G   VLFGGRG GY+VL+DVW L V E   
Sbjct: 267 SENFCSGTWRELVTHPSPPARSGHTLTCIEGTGIVLFGGRGSGYDVLHDVWLLQVSEVEL 326

Query: 246 KWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFT 305
           KW+QI Y LQ+IPAG SLPRVGHSATLILGGR+LIYGGEDS R RKDDFWVLD   IP +
Sbjct: 327 KWIQILYNLQDIPAGVSLPRVGHSATLILGGRLLIYGGEDSQRHRKDDFWVLDVSKIP-S 385

Query: 306 SVQQSMLDSRGLLL-NMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPAD 364
           +  QS L+SRGL   NMWK L+A+GYKP  RSFHRAC D+SG  LYVFGGMVDGL+QPA+
Sbjct: 386 NKAQSPLNSRGLQANNMWKMLKAKGYKPYRRSFHRACADHSGCRLYVFGGMVDGLLQPAE 445

Query: 365 TSGLRFDGRLLLVEL 379
             GLRFDG L LV+L
Sbjct: 446 AYGLRFDGELFLVKL 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799808|emb|CAN68359.1| hypothetical protein VITISV_029196 [Vitis vinifera]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/376 (72%), Positives = 317/376 (84%), Gaps = 1/376 (0%)

Query: 6   VPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLD 65
           + WMRLY+QV QL+SVSC  +S  D  +VLP PRASHSLNFVS+CLVLFGGG EGGRH+D
Sbjct: 95  LSWMRLYKQVCQLDSVSCHRLSGPDAGMVLPKPRASHSLNFVSDCLVLFGGGSEGGRHID 154

Query: 66  DTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQ 125
           DTWVAY+GNDF+ ML+W+K+ SGIPSGRFGHTCVVIG+ LVLFGGIND G RHNDTW+GQ
Sbjct: 155 DTWVAYIGNDFRRMLRWEKITSGIPSGRFGHTCVVIGNHLVLFGGINDDGIRHNDTWVGQ 214

Query: 126 IACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLEL 185
           +A +E LG T+SWRLLDVGS+APP RGAHA CCI N +MVIH GIGLYGLRLGDTW+L+L
Sbjct: 215 VAPNETLGFTVSWRLLDVGSVAPPPRGAHAGCCIGNNRMVIHGGIGLYGLRLGDTWMLDL 274

Query: 186 SENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFF 245
           SEN CFG+W ++VTHPSPPARSGH+LT IGG+RTVLFGGRG+ Y VLND+W  +  E + 
Sbjct: 275 SENLCFGTWHEVVTHPSPPARSGHTLTCIGGSRTVLFGGRGLSYNVLNDLWLFEFSEVYS 334

Query: 246 KWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI-PF 304
           KWVQI YEL+N+P G SLPRVGHSATLILGGRVLIYGGEDS R RKDDFWVLDT AI   
Sbjct: 335 KWVQILYELKNVPGGISLPRVGHSATLILGGRVLIYGGEDSQRHRKDDFWVLDTGAITSV 394

Query: 305 TSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPAD 364
             +    L+SRGLL+N+WKRL AEGYKP CRSFH AC D SGR+L+VFGGMVDGL++PA+
Sbjct: 395 NPINPIPLNSRGLLVNIWKRLNAEGYKPECRSFHGACTDRSGRFLFVFGGMVDGLIRPAE 454

Query: 365 TSGLRFDGRLLLVELV 380
            +G+RFD  L L ELV
Sbjct: 455 PAGMRFDAELFLAELV 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100511|ref|XP_002311905.1| predicted protein [Populus trichocarpa] gi|222851725|gb|EEE89272.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/375 (73%), Positives = 308/375 (82%), Gaps = 1/375 (0%)

Query: 6   VPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLD 65
           +PWMRLY+QV+QL+S SC  + D D DL+LP PRASHSLNFVS+CLVLFGGG EGGR LD
Sbjct: 92  LPWMRLYKQVSQLDSFSCHKLPDPDSDLMLPTPRASHSLNFVSDCLVLFGGGREGGRDLD 151

Query: 66  DTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQ 125
           DTWVAY+G DFQ MLKWQKV SGIPSGRFGHTC VIG+ LVLFGGINDRG R NDTW+GQ
Sbjct: 152 DTWVAYIGKDFQRMLKWQKVTSGIPSGRFGHTCAVIGENLVLFGGINDRGMRQNDTWVGQ 211

Query: 126 IACHENLGIT-LSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLE 184
           +   ENLGIT LSWRLLDV S+APP RGAHAACCID R MVIH GIGLYGLRLGDTW+LE
Sbjct: 212 VVLGENLGITTLSWRLLDVSSVAPPPRGAHAACCIDKRTMVIHGGIGLYGLRLGDTWILE 271

Query: 185 LSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGF 244
           LSENFC G+W +LV HPSPP RSGH+LT I G  TVLFGGRG+GY+VL+DVW L   E  
Sbjct: 272 LSENFCSGTWIELVAHPSPPPRSGHTLTCIEGTGTVLFGGRGLGYDVLHDVWLLQASEDQ 331

Query: 245 FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPF 304
            KWVQ+ Y LQ+IP G SLPRVGHSATLILGGR+LIYGGEDS R RK DFWVLD   IP 
Sbjct: 332 LKWVQMLYNLQDIPEGVSLPRVGHSATLILGGRLLIYGGEDSQRHRKGDFWVLDVSKIPS 391

Query: 305 TSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPAD 364
              Q + L+SRGL  NMW+RL+A+GYKPNCRSFHRAC D+SGR LYVFGGMVD L+ PA+
Sbjct: 392 IKEQSTPLNSRGLQANMWRRLKAKGYKPNCRSFHRACADHSGRRLYVFGGMVDSLLHPAE 451

Query: 365 TSGLRFDGRLLLVEL 379
            S LRFDG L LV+ 
Sbjct: 452 ASELRFDGELFLVKF 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443349|ref|XP_002264976.1| PREDICTED: F-box/kelch-repeat protein At1g51550 [Vitis vinifera] gi|297735772|emb|CBI18459.3| unnamed protein product [Vitis vinifera]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 273/376 (72%), Positives = 316/376 (84%), Gaps = 1/376 (0%)

Query: 6   VPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLD 65
           + WMRLY+QV QL+SVSC  +S  D  +VLP PRAS SLNFVS+CLVLFGGG EGGRH+D
Sbjct: 95  LSWMRLYKQVCQLDSVSCHRLSGPDAGMVLPKPRASLSLNFVSDCLVLFGGGSEGGRHID 154

Query: 66  DTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQ 125
           DTWVAY+GNDF+ ML+W+K+ SGIPSGRFGHTCVVIG+ LVLFGGIND G RHNDTW+GQ
Sbjct: 155 DTWVAYIGNDFRRMLRWEKITSGIPSGRFGHTCVVIGNHLVLFGGINDDGIRHNDTWVGQ 214

Query: 126 IACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLEL 185
           +A +E LG T+SWRLLDVGS+APP RGAHA CCI N +MVIH GIGLYGLRLGDTW+L+L
Sbjct: 215 VALNETLGFTVSWRLLDVGSVAPPPRGAHAGCCIGNNRMVIHGGIGLYGLRLGDTWMLDL 274

Query: 186 SENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFF 245
           SEN CFG+W ++VTHPSPPARSGH+LT IGG+RTVLFGGRG+ Y VLND+W  +  E + 
Sbjct: 275 SENLCFGTWHEVVTHPSPPARSGHTLTCIGGSRTVLFGGRGLSYNVLNDLWLFEFSEVYS 334

Query: 246 KWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI-PF 304
           KWVQI YEL+N+P G SLPRVGHSATLILGGRVLIYGGEDS R RKDDFWVLDT AI   
Sbjct: 335 KWVQILYELKNVPGGISLPRVGHSATLILGGRVLIYGGEDSQRHRKDDFWVLDTGAITSV 394

Query: 305 TSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPAD 364
             +    L+SRGLL+N+WKRL AEGYKP CRSFH AC D SGR+L+VFGGMVDGL++PA+
Sbjct: 395 NPINPIPLNSRGLLVNIWKRLNAEGYKPECRSFHGACTDRSGRFLFVFGGMVDGLIRPAE 454

Query: 365 TSGLRFDGRLLLVELV 380
            +G+RFD  L L ELV
Sbjct: 455 PAGMRFDAELFLAELV 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555596|ref|XP_002518834.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223542007|gb|EEF43552.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 275/377 (72%), Positives = 312/377 (82%), Gaps = 5/377 (1%)

Query: 7   PWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDD 66
           PWMRLY+QV+ L+++SC  +SD D D +LP+PRASHSLNF+S+CLVLFGGGCEGGRHLDD
Sbjct: 91  PWMRLYKQVSLLDTISCHKLSDPDTDSLLPSPRASHSLNFISDCLVLFGGGCEGGRHLDD 150

Query: 67  TWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQI 126
           TWVAY+GN+F    KWQKV+SG+PSGRFGHTCVVIG  LVLFGGINDRG R NDTWIGQ+
Sbjct: 151 TWVAYIGNEFPRTFKWQKVDSGVPSGRFGHTCVVIGHLLVLFGGINDRGIRQNDTWIGQL 210

Query: 127 ACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELS 186
              +NL I+LSWRLL V S+APP+RGAHAACCID RKMVI  GIGL GLRLGDTWVLELS
Sbjct: 211 IFSDNLCISLSWRLLSVQSLAPPSRGAHAACCIDQRKMVIQGGIGLNGLRLGDTWVLELS 270

Query: 187 ENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFK 246
           EN CFG+W +LV HPSPP RSGHSLT IG    VLFGGRG+GYEVLNDVW L + +G  K
Sbjct: 271 ENLCFGTWHELVIHPSPPPRSGHSLTCIGEPGLVLFGGRGLGYEVLNDVWLLQMSDGQLK 330

Query: 247 WVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTS 306
           WVQ+ YELQNIP G SLPRVGHSATL LGGRVLIYGGEDS R RKDDFW+LD  ++  T 
Sbjct: 331 WVQMLYELQNIPEGVSLPRVGHSATLTLGGRVLIYGGEDSYRHRKDDFWMLDISSMISTQ 390

Query: 307 VQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTS 366
           +  + L +     NMWKRL+A+GYKPN RSFHRAC D+SGRYLYVFGGMVDG++QPA+ S
Sbjct: 391 MLPTALRA-----NMWKRLKAKGYKPNRRSFHRACGDHSGRYLYVFGGMVDGVLQPAEAS 445

Query: 367 GLRFDGRLLLVELVPLL 383
           GLRFDG L LVEL  LL
Sbjct: 446 GLRFDGELFLVELGTLL 462

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522260|ref|XP_003529765.1| PREDICTED: F-box/kelch-repeat protein At1g51550-like [Glycine max]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 260/375 (69%), Positives = 316/375 (84%), Gaps = 3/375 (0%)

Query: 7   PWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDD 66
           PWMRLY+QV+Q++SV C  +  +D D   P  RASHSLNFVS+CLVLFGGGCEGGRHLDD
Sbjct: 87  PWMRLYKQVSQMDSVCCHKLLVSDLDF--PAARASHSLNFVSDCLVLFGGGCEGGRHLDD 144

Query: 67  TWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQI 126
           TWVAY+GNDF+ MLKWQ V+SGIPSGRFGHTCV +GD LVLFGGINDRGNR NDTW+G +
Sbjct: 145 TWVAYIGNDFRRMLKWQTVHSGIPSGRFGHTCVEMGDYLVLFGGINDRGNRKNDTWLGHV 204

Query: 127 ACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELS 186
             +EN G+T SW++LDVG++APP+RGAHAACCID ++M+IH GIGL GLRLGDTWVLE+S
Sbjct: 205 MFNENNGVTFSWKMLDVGNVAPPSRGAHAACCIDEKRMIIHGGIGLNGLRLGDTWVLEMS 264

Query: 187 ENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFK 246
           ++ CFG+W ++V HPSPP RSGH+LT IG +RT+LFGGRG+GYEVL+DVW LD Y+G+ +
Sbjct: 265 DSHCFGTWHEIVAHPSPPPRSGHTLTCIGRSRTILFGGRGLGYEVLDDVWLLDTYQGYQR 324

Query: 247 WVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTS 306
           WVQI Y+LQ+IPAG SLPRVGH+ATL+LGGR+LIYGGEDS R+RKDDFWVLD  AIP+  
Sbjct: 325 WVQIVYDLQSIPAGVSLPRVGHTATLVLGGRLLIYGGEDSYRQRKDDFWVLDISAIPYPC 384

Query: 307 V-QQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADT 365
           + QQ  + S+ +L  MWKR ++ G+  N RSFHRAC D SGRY+YVFGGMVDG +QPA+ 
Sbjct: 385 ITQQITVSSKKVLTRMWKRWKSSGHAANSRSFHRACADRSGRYVYVFGGMVDGFLQPAEP 444

Query: 366 SGLRFDGRLLLVELV 380
           SGLRFDG L LV+ +
Sbjct: 445 SGLRFDGELFLVDYI 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526302|ref|XP_003531757.1| PREDICTED: F-box/kelch-repeat protein At1g51550-like [Glycine max]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/377 (66%), Positives = 299/377 (79%), Gaps = 18/377 (4%)

Query: 7   PWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDD 66
           PWMRLY+QV+ ++SV C  +  +D D   P  RASHSLNFVS+CLVLFGGGCEGGRHLDD
Sbjct: 95  PWMRLYKQVSLMDSVCCHKLLVSDLDF--PAARASHSLNFVSDCLVLFGGGCEGGRHLDD 152

Query: 67  TWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQI 126
           TWVAY+GNDF+ MLKWQ V+SGIPSGRFGHTCV +GDCLVLFGGI+DRGNR NDTW+G +
Sbjct: 153 TWVAYIGNDFRRMLKWQTVHSGIPSGRFGHTCVEMGDCLVLFGGIDDRGNRQNDTWLGHV 212

Query: 127 ACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELS 186
              EN G+T SW++L VG++APP RGAHAAC ID ++M+IH GIGL GLRLGDT      
Sbjct: 213 MFSENNGVTFSWKMLAVGNVAPPPRGAHAACSIDEKRMIIHGGIGLNGLRLGDT------ 266

Query: 187 ENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFK 246
                  W ++V+HPSPP RSGH+LT IG +RT+LFGGRG+GYEVL+DVW LD Y+G+ K
Sbjct: 267 -------WHEIVSHPSPPPRSGHTLTCIGRSRTILFGGRGLGYEVLDDVWLLDTYQGYQK 319

Query: 247 WVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPF-- 304
           WVQI Y+LQ+IP G SLPRVGH+ATL+LGGR+LIYGGE+S R RKDDFWVLD  AIP+  
Sbjct: 320 WVQIVYDLQSIPDGVSLPRVGHTATLVLGGRLLIYGGENSYRHRKDDFWVLDISAIPYPP 379

Query: 305 -TSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPA 363
            +  QQ  + S+ +L  MWKR ++ G+  N RSFHRAC D SG YLYVFGGMVDG +QPA
Sbjct: 380 CSITQQITVSSKKVLTRMWKRWKSSGHAANSRSFHRACADRSGCYLYVFGGMVDGFLQPA 439

Query: 364 DTSGLRFDGRLLLVELV 380
           + SGLRFDG L LVELV
Sbjct: 440 EPSGLRFDGELFLVELV 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852882|ref|XP_002894322.1| hypothetical protein ARALYDRAFT_474268 [Arabidopsis lyrata subsp. lyrata] gi|297340164|gb|EFH70581.1| hypothetical protein ARALYDRAFT_474268 [Arabidopsis lyrata subsp. lyrata]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/384 (62%), Positives = 289/384 (75%), Gaps = 20/384 (5%)

Query: 8   WMRLYRQVTQLESVSCRNISDADGDLV----LPNPRASHSLNFVSNCLVLFGGGCEGGRH 63
           WM ++++V +++SV C  ISD D D       P PRASHSLNFV++ LVLFGGGC+GGRH
Sbjct: 87  WMLMFQRVYKMDSVCCHKISDPDDDDEESSSFPIPRASHSLNFVNDHLVLFGGGCQGGRH 146

Query: 64  LDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWI 123
           LDDTW +YV    Q +LKW+KV SG PSGRFGHTC+VIG+ L+LFGGINDRG R NDTWI
Sbjct: 147 LDDTWTSYVDKSNQSILKWKKVESGTPSGRFGHTCIVIGEYLLLFGGINDRGERLNDTWI 206

Query: 124 GQIACHENLGITLSWRLLDVGSI---APPARGAHAACCIDNRKMVIHAGIGLYGLRLGDT 180
           GQ+ CHE     L+W+LL+VGS+    PP RGAH+ACCI  +KMV+H GIGL G+RLGDT
Sbjct: 207 GQVFCHEG----LAWKLLNVGSLQRPCPPPRGAHSACCIAEKKMVVHGGIGLNGVRLGDT 262

Query: 181 WVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDV 240
           W+LELSE+F  G+W  + +  SPP RSGH+LT I  N+ VLFGGRG+GY+VL+DVW LD+
Sbjct: 263 WILELSEDFTSGTWHMVESQQSPPPRSGHTLTCIRENQVVLFGGRGLGYDVLDDVWILDI 322

Query: 241 YEGF-FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDT 299
            E    KW+QI Y  Q++P   SLPRVGHSATL+LGGR+LIYGGEDS R RKDDFWVLD 
Sbjct: 323 QEQCEEKWIQIFYNFQDVPEHASLPRVGHSATLVLGGRILIYGGEDSYRHRKDDFWVLDV 382

Query: 300 KAIPFTSVQQSMLDSRGLLLN---MWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 356
           K IP      S L  +GL LN   +WK+L    Y P  RSFHRAC D SGR++YVFGGMV
Sbjct: 383 KTIP-----SSGLKPQGLSLNGSSVWKKLDRISYGPKSRSFHRACVDCSGRFVYVFGGMV 437

Query: 357 DGLVQPADTSGLRFDGRLLLVELV 380
           DGL+QPA +SGLRFDG L +VELV
Sbjct: 438 DGLLQPAASSGLRFDGELFMVELV 461

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403574|ref|NP_564592.1| F-box/kelch-repeat protein [Arabidopsis thaliana] gi|75169531|sp|Q9C8K7.1|FBK21_ARATH RecName: Full=F-box/kelch-repeat protein At1g51550 gi|12325373|gb|AAG52632.1|AC024261_19 hypothetical protein; 21456-23101 [Arabidopsis thaliana] gi|115646730|gb|ABJ17097.1| At1g51550 [Arabidopsis thaliana] gi|332194561|gb|AEE32682.1| F-box/kelch-repeat protein [Arabidopsis thaliana]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/384 (62%), Positives = 289/384 (75%), Gaps = 20/384 (5%)

Query: 8   WMRLYRQVTQLESVSCRNISDADGDLV----LPNPRASHSLNFVSNCLVLFGGGCEGGRH 63
           WM ++++V +++SV C  ISD D D       P PRASHSLNFV++ LVLFGGGC+GGRH
Sbjct: 88  WMLMFQRVYKMDSVCCHKISDPDDDDEESSSFPIPRASHSLNFVNDHLVLFGGGCQGGRH 147

Query: 64  LDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWI 123
           LDDTW +YV    Q +LKW+KV SG PSGRFGHTC+VIG+ L+LFGGINDRG R NDTWI
Sbjct: 148 LDDTWTSYVDKSNQSILKWKKVKSGTPSGRFGHTCIVIGEYLLLFGGINDRGERLNDTWI 207

Query: 124 GQIACHENLGITLSWRLLDVGSIA---PPARGAHAACCIDNRKMVIHAGIGLYGLRLGDT 180
           GQ+ CHE     LSW+LL+VGS+    PP RGAH+ACCI  +KMV+H GIGL G+RLGDT
Sbjct: 208 GQVFCHEG----LSWKLLNVGSLQRPRPPPRGAHSACCIAEKKMVVHGGIGLNGVRLGDT 263

Query: 181 WVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDV 240
           W+LELSE+F  G+W  + +   PP RSGH+LT I  N+ VLFGGRG+GY+VL+DVW LD+
Sbjct: 264 WILELSEDFSSGTWHMVESPQLPPPRSGHTLTCIRENQVVLFGGRGLGYDVLDDVWILDI 323

Query: 241 YEGF-FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDT 299
            E    KW+QI Y+ Q++P   SLPRVGHSATL+LGGR+LIYGGEDS R RKDDFWVLD 
Sbjct: 324 QEPCEEKWIQIFYDFQDVPEYASLPRVGHSATLVLGGRILIYGGEDSYRHRKDDFWVLDV 383

Query: 300 KAIPFTSVQQSMLDSRGLLLN---MWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 356
           K IP      S L  +GL LN   +WK+L    Y P  RSFHRAC D SGR+LYVFGGMV
Sbjct: 384 KTIP-----SSGLKPQGLSLNGSSVWKKLDRISYGPKSRSFHRACADCSGRFLYVFGGMV 438

Query: 357 DGLVQPADTSGLRFDGRLLLVELV 380
           DGL+QPA +SGLRFDG L +VELV
Sbjct: 439 DGLLQPAASSGLRFDGELFMVELV 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51968990|dbj|BAD43187.1| unknown protein [Arabidopsis thaliana] gi|51969154|dbj|BAD43269.1| unknown protein [Arabidopsis thaliana]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/384 (62%), Positives = 289/384 (75%), Gaps = 20/384 (5%)

Query: 8   WMRLYRQVTQLESVSCRNISDADGDLV----LPNPRASHSLNFVSNCLVLFGGGCEGGRH 63
           WM ++++V +++SV C  ISD D D       P PRASHSLNFV++ LVLFGGGC+GGRH
Sbjct: 86  WMLMFQRVYKMDSVCCHKISDPDDDDEESSSFPIPRASHSLNFVNDHLVLFGGGCQGGRH 145

Query: 64  LDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWI 123
           LDDTW +YV    Q +LKW+KV SG PSGRFGHTC+VIG+ L+LFGGINDRG R NDTWI
Sbjct: 146 LDDTWTSYVDKSNQSILKWKKVKSGTPSGRFGHTCIVIGEYLLLFGGINDRGERLNDTWI 205

Query: 124 GQIACHENLGITLSWRLLDVGSIA---PPARGAHAACCIDNRKMVIHAGIGLYGLRLGDT 180
           GQ+ CHE     LSW+LL+VGS+    PP RGAH+ACCI  +KMV+H GIGL G+RLGDT
Sbjct: 206 GQVFCHEG----LSWKLLNVGSLQRPRPPPRGAHSACCIAEKKMVVHGGIGLNGVRLGDT 261

Query: 181 WVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDV 240
           W+LELSE+F  G+W  + +   PP RSGH+LT I  N+ VLFGGRG+GY+VL+DVW LD+
Sbjct: 262 WILELSEDFSSGTWHMVESPQLPPPRSGHTLTCIRENQVVLFGGRGLGYDVLDDVWILDI 321

Query: 241 YEGF-FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDT 299
            E    KW+QI Y+ Q++P   SLPRVGHSATL+LGGR+LIYGGEDS R RKDDFWVLD 
Sbjct: 322 QEPCEEKWIQIFYDFQDVPEYASLPRVGHSATLVLGGRILIYGGEDSYRHRKDDFWVLDV 381

Query: 300 KAIPFTSVQQSMLDSRGLLLN---MWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 356
           K IP      S L  +GL LN   +WK+L    Y P  RSFHRAC D SGR+LYVFGGMV
Sbjct: 382 KTIP-----SSGLKPQGLSLNGSSVWKKLDRISYGPKSRSFHRACADCSGRFLYVFGGMV 436

Query: 357 DGLVQPADTSGLRFDGRLLLVELV 380
           DGL+QPA +SGLRFDG L +VELV
Sbjct: 437 DGLLQPAASSGLRFDGELFMVELV 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
TAIR|locus:2033934	478	AT1G51550 "AT1G51550" [Arabido	0.937	0.751	0.621	2.1e-125
TAIR|locus:505006254	611	LKP2 "AT2G18915" [Arabidopsis	0.723	0.453	0.315	1.8e-29
TAIR|locus:2172994	626	ZTL "AT5G57360" [Arabidopsis t	0.718	0.439	0.312	5.2e-28
TAIR|locus:2200176	619	FKF1 "AT1G68050" [Arabidopsis	0.728	0.450	0.310	8e-27
DICTYBASE|DDB_G0268860	943	rngB "Kelch repeat-containing	0.603	0.244	0.315	4.5e-19
GENEDB_PFALCIPARUM|PF14_0630	889	PF14_0630 "protein serine/thre	0.522	0.224	0.336	1.3e-18
UNIPROTKB|Q8IKH5	889	PF14_0630 "Serine/threonine-pr	0.522	0.224	0.336	1.3e-18
POMBASE|SPCC1223.06	1147	tea1 "cell end marker Tea1" [S	0.592	0.197	0.303	5.8e-13
UNIPROTKB|E2RDX4	790	HCFC2 "Uncharacterized protein	0.535	0.259	0.288	5.7e-12
UNIPROTKB|E1BEJ7	792	HCFC2 "Uncharacterized protein	0.535	0.258	0.288	5.7e-12

TAIR|locus:2033934 AT1G51550 "AT1G51550" [Arabidopsis thaliana (taxid:3702)]

 Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
 Identities = 232/373 (62%), Positives = 282/373 (75%)

Query:     8 WMRLYRQVTQLESVSCRNISDADGD----LVLPNPRASHSLNFVSNCLVLFGGGCEGGRH 63
             WM ++++V +++SV C  ISD D D       P PRASHSLNFV++ LVLFGGGC+GGRH
Sbjct:    88 WMLMFQRVYKMDSVCCHKISDPDDDDEESSSFPIPRASHSLNFVNDHLVLFGGGCQGGRH 147

Query:    64 LDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWI 123
             LDDTW +YV    Q +LKW+KV SG PSGRFGHTC+VIG+ L+LFGGINDRG R NDTWI
Sbjct:   148 LDDTWTSYVDKSNQSILKWKKVKSGTPSGRFGHTCIVIGEYLLLFGGINDRGERLNDTWI 207

Query:   124 GQIACHENLGITLSWRLLDVGSIA---PPARGAHAACCIDNRKMVIHAGIGLYGLRLGDT 180
             GQ+ CHE L    SW+LL+VGS+    PP RGAH+ACCI  +KMV+H GIGL G+RLGDT
Sbjct:   208 GQVFCHEGL----SWKLLNVGSLQRPRPPPRGAHSACCIAEKKMVVHGGIGLNGVRLGDT 263

Query:   181 WVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDV 240
             W+LELSE+F  G+W  + +   PP RSGH+LT I  N+ VLFGGRG+GY+VL+DVW LD+
Sbjct:   264 WILELSEDFSSGTWHMVESPQLPPPRSGHTLTCIRENQVVLFGGRGLGYDVLDDVWILDI 323

Query:   241 YEGFF-KWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDT 299
              E    KW+QI Y+ Q++P   SLPRVGHSATL+LGGR+LIYGGEDS R RKDDFWVLD 
Sbjct:   324 QEPCEEKWIQIFYDFQDVPEYASLPRVGHSATLVLGGRILIYGGEDSYRHRKDDFWVLDV 383

Query:   300 KAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGL 359
             K IP + ++   L   G   ++WK+L    Y P  RSFHRAC D SGR+LYVFGGMVDGL
Sbjct:   384 KTIPSSGLKPQGLSLNGS--SVWKKLDRISYGPKSRSFHRACADCSGRFLYVFGGMVDGL 441

Query:   360 VQPADTSGLRFDG 372
             +QPA +SGLRFDG
Sbjct:   442 LQPAASSGLRFDG 454

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:505006254 LKP2 "AT2G18915" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 95/301 (31%), Positives = 154/301 (51%)

Query:     6 VPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLD 65
             + W+RL R+ T  E+ + R  S   G  V P+ R + S   V N +V+FGG     + ++
Sbjct:   264 IGWVRLAREFTTHEATAWRKFSV--GGTVEPS-RCNFSACAVGNRIVIFGGEGVNMQPMN 320

Query:    66 DTWVAYVGNDFQGMLKWQKVN-SGIPSGRFGHTCVVI-GDCLVLFGGINDRGNRHNDTWI 123
             DT+V  +G+      +W+ V  S  P GR+GHT   + G  LV+FGG    G   ND ++
Sbjct:   321 DTFVLDLGSSSP---EWKSVLVSSPPPGRWGHTLSCVNGSRLVVFGGYGSHGLL-NDVFL 376

Query:   124 GQIACHENLGITLSWRLLDVGSIAPPA-RGAHAACCIDNRKMVIHAGIGLYGLRLGDTWV 182
               +          SWR  +V  +APP  R  H++C +D  K+++  G    G  L DT++
Sbjct:   377 LDLDADPP-----SWR--EVSGLAPPIPRSWHSSCTLDGTKLIVSGGCADSGALLSDTFL 429

Query:   183 LELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGG---RGVGYEVLNDVWFLD 239
             L+LS +    +W+++    +PP+R GH+LT  G  + ++FGG    G      NDV+ +D
Sbjct:   430 LDLSMDI--PAWREIPVPWTPPSRLGHTLTVYGDRKILMFGGLAKNGTLRFRSNDVYTMD 487

Query:   240 VYEGFFKWVQIPYELQNIPAGFSLP--RVGHSATLILGGRVLIYGGEDSARRRKDDFWVL 297
             + E    W  +     ++P G + P  R+ H A  + GGR+LI+GG  +        ++L
Sbjct:   488 LSEDEPSWRPVIGYGSSLPGGMAAPPPRLDHVAISLPGGRILIFGGSVAGLDSASQLYLL 547

Query:   298 D 298
             D
Sbjct:   548 D 548

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007623 "circadian rhythm" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0009639 "response to red or far red light" evidence=RCA

GO:0048574 "long-day photoperiodism, flowering" evidence=RCA

TAIR|locus:2172994 ZTL "AT5G57360" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 5.2e-28, P = 5.2e-28
 Identities = 94/301 (31%), Positives = 155/301 (51%)

Query:     8 WMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDT 67
             W RL R++T LE+ + R +S   G  V P+ R + S   V N +VLFGG     + ++DT
Sbjct:   265 WGRLARELTTLEAAAWRKLSV--GGSVEPS-RCNFSACAVGNRVVLFGGEGVNMQPMNDT 321

Query:    68 WVAYVGNDFQGMLKWQKVN-SGIPSGRFGHTCVVI-GDCLVLFGGINDRGNRHNDTWIGQ 125
             +V  + +D+    +WQ V  S  P GR+GHT   + G  LV+FGG   +G   ND ++  
Sbjct:   322 FVLDLNSDYP---EWQHVKVSSPPPGRWGHTLTCVNGSNLVVFGGCGQQGLL-NDVFVLN 377

Query:   126 IACHENLGITLSWRLLDVGSIAPPA-RGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLE 184
             +          +WR  ++  +APP  R  H++C +D  K+++  G    G+ L DT++L+
Sbjct:   378 LDAKPP-----TWR--EISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLD 430

Query:   185 LSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVL---NDVWFLDVY 241
             LS       W+++    +PP+R GH+L+  GG + ++FGG      +    +DV+ +D+ 
Sbjct:   431 LSIEKPV--WREIPAAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLKFRSSDVFTMDLS 488

Query:   242 EGFFKWVQIPYELQ---NIPAGFSLP-RVGHSATLILGGRVLIYGGEDSARRRKDDFWVL 297
             E    W  +          P G + P R+ H A  + GGR+LI+GG  +        ++L
Sbjct:   489 EEEPCWRCVTGSGMPGAGNPGGVAPPPRLDHVAVNLPGGRILIFGGSVAGLHSASQLYLL 548

Query:   298 D 298
             D
Sbjct:   549 D 549

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007623 "circadian rhythm" evidence=ISS;IMP;TAS

GO:0043153 "entrainment of circadian clock by photoperiod" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010498 "proteasomal protein catabolic process" evidence=IMP

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IC

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0010114 "response to red light" evidence=IMP

GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP

GO:0009882 "blue light photoreceptor activity" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009639 "response to red or far red light" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

TAIR|locus:2200176 FKF1 "AT1G68050" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 8.0e-27, P = 8.0e-27
 Identities = 95/306 (31%), Positives = 160/306 (52%)

Query:     1 MMMTTVPWMRLYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEG 60
             +M   + W RL R++T LE+V  R  +   G +V P+ R + S   V N LVLFGG    
Sbjct:   270 IMTKKLRWGRLARELTTLEAVCWRKFTV--GGIVQPS-RCNFSACAVGNRLVLFGGEGVN 326

Query:    61 GRHLDDTWVAYVGNDFQGMLKWQKVN-SGIPSGRFGHTCVVI-GDCLVLFGGINDRGNRH 118
              + LDDT+V  +  +     +WQ+V  +  P GR+GHT   + G  LV+FGG   +G   
Sbjct:   327 MQPLDDTFVLNLDAECP---EWQRVRVTSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLL- 382

Query:   119 NDTWIGQI-ACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRL 177
             ND ++  + A H       +W+ +  G   P  R  H++C I+  K+V+  G    G+ L
Sbjct:   383 NDVFVLDLDAKHP------TWKEV-AGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLL 435

Query:   178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGG-RGVGYEVLN--D 234
              DT++L+L+ +    +W+++ T  +PP+R GHSL+  G  + ++FGG    G+  L   +
Sbjct:   436 SDTFLLDLTTDK--PTWKEIPTSWAPPSRLGHSLSVFGRTKILMFGGLANSGHLKLRSGE 493

Query:   235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLP--RVGHSATLILGGRVLIYGGEDSARRRKD 292
              + +D+ +   +W ++  E    P G  +P  R+ H A  +  GRV+I+GG  +      
Sbjct:   494 AYTIDLEDEEPRWREL--ECSAFP-GVVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPS 550

Query:   293 DFWVLD 298
               +++D
Sbjct:   551 QLFLID 556

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0007623 "circadian rhythm" evidence=ISS;IDA;IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=IDA

GO:0001047 "core promoter binding" evidence=IDA

GO:0010468 "regulation of gene expression" evidence=IMP

DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 254 (94.5 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 81/257 (31%), Positives = 120/257 (46%)

Query:    41 SHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVV 100
             S S  +  +  ++F GG    +   D  + YV N  +  + W++V +    GR GHT VV
Sbjct:    78 SQSRPYSDSYQIIFFGGRATSKPFSDINILYV-NSNRSFI-WKQVTTKSIEGRAGHTAVV 135

Query:   101 IGDCLVLFGGINDRGNRH-NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCI 159
                 LV+FGG N+  +++ N   +  +  +E       WR    G + P AR  H+   +
Sbjct:   136 YRQNLVVFGGHNNHKSKYYNSVLLFSLESNE-------WRQQVCGGVIPSARATHSTFQV 188

Query:   160 DNRKMVIHAGIGLYGLRL-GDTWVLELSENFCFGSWQQLVTHPSPPA-RSGHSLTRIGGN 217
             +N KM I  G    G +   D + L+L E +    W+++    +PP  RSGHS T I  N
Sbjct:   189 NNNKMFIFGGYD--GKKYYNDIYYLDL-ETWI---WKKVEAKGTPPKPRSGHSATMIQNN 242

Query:   218 RTVLFGGRGVGYEVLNDVWFLDVYEGF--FKWVQIPYELQNIPAGFSLPRVGHSATLILG 275
             + ++FGG G     LND+  L + EG   ++W Q  Y    IP      R  H+   I G
Sbjct:   243 KLMIFGGCGSDSNFLNDIHILHI-EGANEYRWEQPSYLGLEIPQA----RFRHTTNFI-G 296

Query:   276 GRVLIYGGEDSARRRKD 292
             GRV IY G  S     D
Sbjct:   297 GRVYIYAGTGSGNLMGD 313

GO:0005737 "cytoplasm" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GENEDB_PFALCIPARUM|PF14_0630 PF14_0630 "protein serine/threonine phosphatase" [Plasmodium falciparum (taxid:5833)]

 Score = 250 (93.1 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 76/226 (33%), Positives = 116/226 (51%)

Query:    83 QKVNSGIPSGRFGHTCVVIGDCLV-LFGG-INDRGNRHNDTWIGQIACHENLGITLS-WR 139
             +K    IP+ RFGHT   +G+  V +FGG I D G ++N T    I  ++   +T + W+
Sbjct:    15 EKQKGDIPAPRFGHTATYLGNNKVAIFGGAIGDAG-KYNIT--DDIYLYD---LTQNKWK 68

Query:   140 LLDVGSIAPPARGAHAACCIDNRKMVIHAGI-GLYGLRLGDTWVLELSENFCFGSWQQLV 198
              L +    P AR AHAA C+D +++VI+ G  G   L L D ++L+L +   + +W  + 
Sbjct:    69 KL-ITENTPSARAAHAAACVDEQQLVIYGGATGGGSLSLDDLYILDLRKEQKY-TWMTVP 126

Query:   199 THPSPPARS-GHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 257
             T    P R  GH +     N  ++FGG   G   LNDVW++ V    F+WV++      I
Sbjct:   127 TKGVTPGRRYGHVMVYSKPN-LIVFGGND-GQNTLNDVWYMHVEMPPFEWVRVI-----I 179

Query:   258 PAGFSLP--RVGHSATLI----LGGRVLIYGGEDSARRRKDDFWVL 297
             P    +P  RV HSA +       G ++I+GG  +  +  DD W L
Sbjct:   180 PNTCKVPPQRVYHSADMCKEGPASGMIVIFGGRSAENKSLDDTWGL 225

GO:0008287 "protein serine/threonine phosphatase complex" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

UNIPROTKB|Q8IKH5 PF14_0630 "Serine/threonine-protein phosphatase" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 250 (93.1 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 76/226 (33%), Positives = 116/226 (51%)

Query:    83 QKVNSGIPSGRFGHTCVVIGDCLV-LFGG-INDRGNRHNDTWIGQIACHENLGITLS-WR 139
             +K    IP+ RFGHT   +G+  V +FGG I D G ++N T    I  ++   +T + W+
Sbjct:    15 EKQKGDIPAPRFGHTATYLGNNKVAIFGGAIGDAG-KYNIT--DDIYLYD---LTQNKWK 68

Query:   140 LLDVGSIAPPARGAHAACCIDNRKMVIHAGI-GLYGLRLGDTWVLELSENFCFGSWQQLV 198
              L +    P AR AHAA C+D +++VI+ G  G   L L D ++L+L +   + +W  + 
Sbjct:    69 KL-ITENTPSARAAHAAACVDEQQLVIYGGATGGGSLSLDDLYILDLRKEQKY-TWMTVP 126

Query:   199 THPSPPARS-GHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 257
             T    P R  GH +     N  ++FGG   G   LNDVW++ V    F+WV++      I
Sbjct:   127 TKGVTPGRRYGHVMVYSKPN-LIVFGGND-GQNTLNDVWYMHVEMPPFEWVRVI-----I 179

Query:   258 PAGFSLP--RVGHSATLI----LGGRVLIYGGEDSARRRKDDFWVL 297
             P    +P  RV HSA +       G ++I+GG  +  +  DD W L
Sbjct:   180 PNTCKVPPQRVYHSADMCKEGPASGMIVIFGGRSAENKSLDDTWGL 225

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0008287 "protein serine/threonine phosphatase complex" evidence=TAS

POMBASE|SPCC1223.06 tea1 "cell end marker Tea1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 203 (76.5 bits), Expect = 5.8e-13, P = 5.8e-13
 Identities = 80/264 (30%), Positives = 117/264 (44%)

Query:    36 PNPRASHSLNFVSNCLVLFGG--GCEGGRHLDDTWVAYVGNDFQGMLKWQKVN-SGI-PS 91
             P+PR  H+   + N  ++FGG    +     D++   Y+ N     L WQK N SG  PS
Sbjct:   131 PSPRLGHASILIGNAFIVFGGLTNHDVADRQDNS--LYLLNT--SSLVWQKANASGARPS 186

Query:    92 GRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHE--NLGITLS-WRLLDVGSIAP 148
             GR+GHT   +G  + LFGG      R  D +   + C +  NL  + S W L  V +  P
Sbjct:   187 GRYGHTISCLGSKICLFGG------RLLDYYFNDLVCFDLNNLNTSDSRWELASVVNDPP 240

Query:   149 PARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHP-SPPARS 207
             PAR  H A    + K+ I  G         D W     ++    +W ++ T   +P  R+
Sbjct:   241 PARAGHVAFTFSD-KLYIFGGTDGANF-FNDLWCYHPKQS----AWSKVETFGVAPNPRA 294

Query:   208 GHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVG 267
             GH+ + + G   V FGGR      LND++   +      W    Y+L ++P   S PR  
Sbjct:   295 GHAASVVEGILYV-FGGRASDGTFLNDLYAFRLSSKH--W----YKLSDLPFTPS-PRSS 346

Query:   268 HSA-----TLILGGRVLIYGGEDS 286
             H+      TL+L G     G  DS
Sbjct:   347 HTLSCSGLTLVLIGGKQGKGASDS 370

GO:0005515 "protein binding" evidence=IPI

GO:0005874 "microtubule" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IC

GO:0010570 "regulation of filamentous growth" evidence=IMP

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0031500 "Tea1 cell-end complex" evidence=IDA

GO:0032153 "cell division site" evidence=IDA

GO:0034613 "cellular protein localization" evidence=IMP

GO:0035838 "growing cell tip" evidence=IDA

GO:0035839 "non-growing cell tip" evidence=IDA

GO:0051285 "cell cortex of cell tip" evidence=IDA

GO:0051286 "cell tip" evidence=IDA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IGI

GO:0071963 "establishment or maintenance of cell polarity regulating cell shape" evidence=IMP

GO:2000771 "positive regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IMP

UNIPROTKB|E2RDX4 HCFC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
 Identities = 72/250 (28%), Positives = 112/250 (44%)

Query:    79 MLKWQKVNS--G-IPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGIT 135
             +L W++V+S  G +P  R GH  V I + +++FGG N+ G       I     H    +T
Sbjct:     6 LLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNE-G-------IAD-ELHVYNTVT 56

Query:   136 LSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQ 195
               W L  V    PP   AH   C D  ++++  G+  YG    + + L+ S       W+
Sbjct:    57 NQWFLPAVRGDIPPGCAAHGFVC-DGTRILVFGGMVEYGRYSNELYELQASRWL----WK 111

Query:   196 QLVTHPS----PPA-RSGHSLTRIGGNRTVLFGGRGVGYE--------VLNDVWFLDVYE 242
             ++  HP     PP  R GHS + + GN+  LFGG     E         LND + L++  
Sbjct:   112 KVKPHPPSSGLPPCPRLGHSFS-LYGNKCYLFGGLANESEDSNNNVPRYLNDFYELELQH 170

Query:   243 G--FFKWVQIPYELQNIPAGFSLPRVGHSATLIL---GG--RVLIYGGEDSARRRKDDFW 295
             G     W  IP     +P+    PR  H+A +      G  ++ ++GG   AR   DD W
Sbjct:   171 GSGVVGW-SIPVTKGIVPS----PRESHTAVIYCKKDSGSPKMYVFGGMCGARL--DDLW 223

Query:   296 VLDTKAIPFT 305
              LD + + ++
Sbjct:   224 QLDLETMSWS 233

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1BEJ7 HCFC2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
 Identities = 72/250 (28%), Positives = 112/250 (44%)

Query:    79 MLKWQKVNS--G-IPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGIT 135
             +L W++V+S  G +P  R GH  V I + +++FGG N+ G       I     H    +T
Sbjct:     6 LLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNE-G-------IAD-ELHVYNTVT 56

Query:   136 LSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQ 195
               W L  V    PP   AH   C D  ++++  G+  YG    + + L+ S       W+
Sbjct:    57 NQWFLPAVRGDIPPGCAAHGFVC-DGTRILVFGGMVEYGRYSNELYELQASRWL----WK 111

Query:   196 QLVTHPS----PPA-RSGHSLTRIGGNRTVLFGGRGVGYE--------VLNDVWFLDVYE 242
             ++  HP     PP  R GHS + + GN+  LFGG     E         LND + L++  
Sbjct:   112 KVKPHPPSSGLPPCPRLGHSFS-LYGNKCYLFGGLANESEDSNNNVPRYLNDFYELELQH 170

Query:   243 G--FFKWVQIPYELQNIPAGFSLPRVGHSATLIL---GG--RVLIYGGEDSARRRKDDFW 295
             G     W  IP     +P+    PR  H+A +      G  ++ ++GG   AR   DD W
Sbjct:   171 GSGVVGW-SIPVTKGIVPS----PRESHTAVIYCKRDSGSPKMYVFGGMCGARL--DDLW 223

Query:   296 VLDTKAIPFT 305
              LD + + ++
Sbjct:   224 QLDLETMSWS 233

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C8K7	FBK21_ARATH	No assigned EC number	0.6276	0.9503	0.7615	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_X000965 hypothetical protein (469 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	383
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	6e-06
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	5e-05
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	1e-04
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	4e-04
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	5e-04
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	6e-04
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	0.003
pfam13854	42	pfam13854, Kelch_5, Kelch motif	0.003
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	0.004

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 42.6 bits (101), Expect = 6e-06
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 205 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 251
            R+ H+ T IG  R  LFGG      VL+DVW  D+      W ++P
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTN--TWTRLP 45

Length = 49

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 264 PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 300
           PR  H++T I  GR+ ++GGE+       D WV D  
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLS 37

Length = 49

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 161 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRI 214
             K+ +  G+G  G RL D WV +L  N    +W++L     P  R+GH+ T I
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTN----TWEKLG--DLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 150 ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPS 202
            R  H +  I + ++ +  G    G  L D WV +LS N    +W +L + PS
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTN----TWTRLPSLPS 49

Length = 49

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 102 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCI 159
           G  + +FGG+ D G R ND W+  +        T +W    +G + P  R  HAA  I
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLD-------TNTWE--KLGDL-PGPRAGHAATVI 48

Length = 48

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 92  GRFGHTCVVIGDC-LVLFGGINDRGNRHNDTWI 123
            R  HT   IGD  L LFGG N+ G+  +D W+
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWV 33

Length = 49

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 216 GNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI 273
           G +  +FGG G G   LND+W  D+      W ++     ++P     PR GH+AT+I
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTN--TWEKLG----DLPG----PRAGHAATVI 48

Length = 48

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 89  IPSGRFGHTCVVIGDCLVLFGGINDRGNRH-NDTWI 123
           +P  R  H  VV+G  + L+GG      +  +D ++
Sbjct: 1   LPVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYV 36

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 49  NCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVI 101
             + +FGG  +GG  L+D WV  +  +      W+K+   +P  R GH   VI
Sbjct: 2   GKIYVFGGLGDGGTRLNDLWVYDLDTN-----TWEKLGD-LPGPRAGHAATVI 48

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
PLN02193	470	nitrile-specifier protein	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG1230	521	consensus Protein containing repeated kelch motifs	100.0
PLN02193	470	nitrile-specifier protein	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	100.0
PLN02153	341	epithiospecifier protein	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
KOG1230	521	consensus Protein containing repeated kelch motifs	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	100.0
PHA03098	534	kelch-like protein; Provisional	99.98
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.98
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.97
PHA02790	480	Kelch-like protein; Provisional	99.96
PHA02790	480	Kelch-like protein; Provisional	99.95
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.85
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.79
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.72
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.67
PF03089	337	RAG2: Recombination activating protein 2; InterPro	99.2
PF03089	337	RAG2: Recombination activating protein 2; InterPro	99.17
PF13964	50	Kelch_6: Kelch motif	99.1
PLN02772	398	guanylate kinase	99.05
PF13964	50	Kelch_6: Kelch motif	99.02
PLN02772	398	guanylate kinase	98.97
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.9
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.89
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.88
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.85
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.78
PF13854	42	Kelch_5: Kelch motif	98.7
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.7
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.69
PF13854	42	Kelch_5: Kelch motif	98.66
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.62
smart00612	47	Kelch Kelch domain.	98.25
smart00612	47	Kelch Kelch domain.	98.12
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.86
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.71
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.3
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.81
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	95.43
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	95.26
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.29
PRK13684	334	Ycf48-like protein; Provisional	93.67
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	93.57
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	91.74
KOG2055	514	consensus WD40 repeat protein [General function pr	90.99
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.43
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	90.03
PRK13684	334	Ycf48-like protein; Provisional	89.02
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.87
KOG2055	514	consensus WD40 repeat protein [General function pr	88.8
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	86.56
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	82.76
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	82.66
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	82.53
PF13088	275	BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A	81.99
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	81.94
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	80.09

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=7.4e-42  Score=329.56  Aligned_cols=302  Identities=21%  Similarity=0.313  Sum_probs=242.6

Q ss_pred             ccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCC-CCCceEEEEeccCcccccceEEcCC--CCCC-CCcc
Q 016774           20 SVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGR-HLDDTWVAYVGNDFQGMLKWQKVNS--GIPS-GRFG   95 (383)
Q Consensus        20 ~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~-~~~~~~~~~~~~~~~~~~~W~~~~~--~~p~-~r~~   95 (383)
                      ..+|.++...+..   |.||.+|++++++++|||+||...... ..+++|+|++..+     +|+.++.  ..|. +|.+
T Consensus       150 ~~~W~~~~~~~~~---P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~-----~W~~~~~~g~~P~~~~~~  221 (470)
T PLN02193        150 LGKWIKVEQKGEG---PGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETR-----TWSISPATGDVPHLSCLG  221 (470)
T ss_pred             hceEEEcccCCCC---CCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCC-----EEEeCCCCCCCCCCcccc
Confidence            3799999877666   899999999999999999999754333 4478999999555     9998753  2343 4678


Q ss_pred             eeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCC
Q 016774           96 HTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGL  175 (383)
Q Consensus        96 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~  175 (383)
                      |++++++++||||||... ...++++|+||+       .+++|+++.+.+..|.+|+.|+++..++ +|||+||.+.. .
T Consensus       222 ~~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~-------~t~~W~~l~~~~~~P~~R~~h~~~~~~~-~iYv~GG~~~~-~  291 (470)
T PLN02193        222 VRMVSIGSTLYVFGGRDA-SRQYNGFYSFDT-------TTNEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGGVSAT-A  291 (470)
T ss_pred             eEEEEECCEEEEECCCCC-CCCCccEEEEEC-------CCCEEEEcCcCCCCCCCccceEEEEECC-EEEEECCCCCC-C
Confidence            999999999999999864 345889999999       6999999987666689999999988877 99999998543 3


Q ss_pred             cccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccc
Q 016774          176 RLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL  254 (383)
Q Consensus       176 ~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~  254 (383)
                      .++++++||+.++    +|++++ ....|.+|..|+++.+ +++||++||...  ...+++++||+.+  ++|+++.   
T Consensus       292 ~~~~~~~yd~~t~----~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g--~~~~dv~~yD~~t--~~W~~~~---  359 (470)
T PLN02193        292 RLKTLDSYNIVDK----KWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNG--CEVDDVHYYDPVQ--DKWTQVE---  359 (470)
T ss_pred             CcceEEEEECCCC----EEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCC--CccCceEEEECCC--CEEEEec---
Confidence            5789999999999    999997 3446788999999988 599999999742  3468999999999  9999995   


Q ss_pred             cCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC--------CCCCCCcEEEEEcCCCcccccccccccccccccccceeec
Q 016774          255 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLR  326 (383)
Q Consensus       255 ~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~  326 (383)
                        ..+..|.+|..|++++ .+++|||+||...        .....+++|+||+.                  +.+|+++.
T Consensus       360 --~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~------------------t~~W~~~~  418 (470)
T PLN02193        360 --TFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE------------------TLQWERLD  418 (470)
T ss_pred             --cCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEEcC------------------cCEEEEcc
Confidence              4456789999999886 8999999999853        12346799999998                  78899887


Q ss_pred             cCC---CCCCCccceeee--ecCCCcEEEEEcCccCCccccCCCccccccCeeeEEEeec
Q 016774          327 AEG---YKPNCRSFHRAC--PDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  381 (383)
Q Consensus       327 ~~~---~~p~~r~~~~~~--~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (383)
                      ..+   ..|.+|..|+++  .+...+.+++|||..+..         +..+|+|.|+++.
T Consensus       419 ~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~---------~~~~D~~~~~~~~  469 (470)
T PLN02193        419 KFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTN---------DRFDDLFFYGIDS  469 (470)
T ss_pred             cCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCcc---------ccccceEEEecCC
Confidence            543   467888777543  233345699999996532         3448999998864

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=9e-43  Score=291.43  Aligned_cols=300  Identities=27%  Similarity=0.441  Sum_probs=248.6

Q ss_pred             CCcccceeeeCCEEEEEccccCCCC----CCCceEEEEeccCcccccceEEcCC------------CCCCCCcceeEEEE
Q 016774           38 PRASHSLNFVSNCLVLFGGGCEGGR----HLDDTWVAYVGNDFQGMLKWQKVNS------------GIPSGRFGHTCVVI  101 (383)
Q Consensus        38 ~r~~~~~~~~~~~i~v~GG~~~~~~----~~~~~~~~~~~~~~~~~~~W~~~~~------------~~p~~r~~~~~~~~  101 (383)
                      .|..|+++.++++||-|||+..+..    .-=|+..++..+     .+|.+++.            ..|-.|++|+.+.+
T Consensus        13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~-----~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y   87 (392)
T KOG4693|consen   13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAEN-----YRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY   87 (392)
T ss_pred             ccccceeeeecceEEecCCcccccccccCCcceeEEeeccc-----eeEEecCcccccccccCCCCccchhhcCceEEEE
Confidence            7899999999999999999866522    112566677644     49999864            13568999999999


Q ss_pred             CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC-Ccccce
Q 016774          102 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG-LRLGDT  180 (383)
Q Consensus       102 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~-~~~~~~  180 (383)
                      ++++||.||+++....-|-+|+||+       +++.|.+....+..|..|.+|++|+.++ .+|||||+..+. ..++|+
T Consensus        88 ~d~~yvWGGRND~egaCN~Ly~fDp-------~t~~W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFGGye~~a~~FS~d~  159 (392)
T KOG4693|consen   88 QDKAYVWGGRNDDEGACNLLYEFDP-------ETNVWKKPEVEGFVPGARDGHSACVWGN-QMYIFGGYEEDAQRFSQDT  159 (392)
T ss_pred             cceEEEEcCccCcccccceeeeecc-------ccccccccceeeecCCccCCceeeEECc-EEEEecChHHHHHhhhccc
Confidence            9999999999986667788999999       7999999999999999999999999999 999999985443 567899


Q ss_pred             EEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCC--------CCccccEEEEEcccCccceEEec
Q 016774          181 WVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVG--------YEVLNDVWFLDVYEGFFKWVQIP  251 (383)
Q Consensus       181 ~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~--------~~~~~~v~~~~~~~~~~~W~~i~  251 (383)
                      +.+|+.|-    +|..+. .+..|.-|-.|+++++ ++.+|||||+.+.        ..+.+.|..+|+.+  ..|...+
T Consensus       160 h~ld~~Tm----tWr~~~Tkg~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T--~aW~r~p  232 (392)
T KOG4693|consen  160 HVLDFATM----TWREMHTKGDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLAT--GAWTRTP  232 (392)
T ss_pred             eeEeccce----eeeehhccCCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcceeEEEeccc--cccccCC
Confidence            99999986    999998 5667778899999999 4999999999432        23556789999999  9999985


Q ss_pred             ccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC-CCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCC
Q 016774          252 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA-RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGY  330 (383)
Q Consensus       252 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  330 (383)
                           .....|..|++|++.+ .++++|+|||+++. +...+|+|.||+.                  +..|..+.+.|.
T Consensus       233 -----~~~~~P~GRRSHS~fv-Yng~~Y~FGGYng~ln~HfndLy~FdP~------------------t~~W~~I~~~Gk  288 (392)
T KOG4693|consen  233 -----ENTMKPGGRRSHSTFV-YNGKMYMFGGYNGTLNVHFNDLYCFDPK------------------TSMWSVISVRGK  288 (392)
T ss_pred             -----CCCcCCCcccccceEE-EcceEEEecccchhhhhhhcceeecccc------------------cchheeeeccCC
Confidence                 6677899999999998 99999999999875 4558999999998                  789999999999


Q ss_pred             CCCCccceeeeecCCCcEEEEEcCccCCc---cccC------CCccccccCeeeEEEeeccC
Q 016774          331 KPNCRSFHRACPDYSGRYLYVFGGMVDGL---VQPA------DTSGLRFDGRLLLVELVPLL  383 (383)
Q Consensus       331 ~p~~r~~~~~~~~~~~~~l~v~GG~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~  383 (383)
                      .|.+|.-+.+++.  ++++|+|||-++..   +.+.      +...+.=.+||..||++|+|
T Consensus       289 ~P~aRRRqC~~v~--g~kv~LFGGTsP~~~~~~Spt~~~G~~~~~~LiD~SDLHvLDF~PsL  348 (392)
T KOG4693|consen  289 YPSARRRQCSVVS--GGKVYLFGGTSPLPCHPLSPTNYNGMISPSGLIDLSDLHVLDFAPSL  348 (392)
T ss_pred             CCCcccceeEEEE--CCEEEEecCCCCCCCCCCCccccCCCCCcccccccccceeeecChhH
Confidence            9999998888777  89999999997521   1111      11222225899999999975

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=4.3e-41  Score=313.08  Aligned_cols=306  Identities=20%  Similarity=0.305  Sum_probs=236.0

Q ss_pred             ccccceeeeecCC-CCCCCCCCCcccceeeeCCEEEEEccccCC-CCCCCceEEEEeccCcccccceEEcCCCCCCC---
Q 016774           18 LESVSCRNISDAD-GDLVLPNPRASHSLNFVSNCLVLFGGGCEG-GRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSG---   92 (383)
Q Consensus        18 ~~~~~W~~~~~~~-~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~---   92 (383)
                      +....|.++...+ ..   |.||.+|++++++++|||+||.... ....+++|+||+..+     +|++++...+.+   
T Consensus         4 ~~~~~W~~~~~~~~~~---P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~p~~~   75 (341)
T PLN02153          4 TLQGGWIKVEQKGGKG---PGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTH-----TWSIAPANGDVPRIS   75 (341)
T ss_pred             ccCCeEEEecCCCCCC---CCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCC-----EEEEcCccCCCCCCc
Confidence            3567899997653 34   8999999999999999999997543 334579999999655     999886433223   


Q ss_pred             CcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCC--CCCCccccceeEEECCcEEEEEccc
Q 016774           93 RFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGS--IAPPARGAHAACCIDNRKMVIHAGI  170 (383)
Q Consensus        93 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~--~~p~~r~~~~~~~~~~~~i~v~GG~  170 (383)
                      +.+|++++++++||||||... ...++++++||+       .+++|+.+...+  ..|.+|..|+++..++ +|||+||.
T Consensus        76 ~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~-------~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~-~iyv~GG~  146 (341)
T PLN02153         76 CLGVRMVAVGTKLYIFGGRDE-KREFSDFYSYDT-------VKNEWTFLTKLDEEGGPEARTFHSMASDEN-HVYVFGGV  146 (341)
T ss_pred             cCceEEEEECCEEEEECCCCC-CCccCcEEEEEC-------CCCEEEEeccCCCCCCCCCceeeEEEEECC-EEEEECCc
Confidence            447999999999999999864 345789999999       699999886532  2478999999988777 99999998


Q ss_pred             CCCC-----CcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCC-------CCccccEEE
Q 016774          171 GLYG-----LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVG-------YEVLNDVWF  237 (383)
Q Consensus       171 ~~~~-----~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~-------~~~~~~v~~  237 (383)
                      ...+     ..++++++||+.++    +|++++ ....|.+|.+|+++.+ +++|||+||....       ....+++++
T Consensus       147 ~~~~~~~~~~~~~~v~~yd~~~~----~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~  221 (341)
T PLN02153        147 SKGGLMKTPERFRTIEAYNIADG----KWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQF  221 (341)
T ss_pred             cCCCccCCCcccceEEEEECCCC----eEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEE
Confidence            5432     23578999999999    999998 3334578999999888 5999999986421       123578999


Q ss_pred             EEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC--------CCCCCCcEEEEEcCCCccccccc
Q 016774          238 LDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFTSVQQ  309 (383)
Q Consensus       238 ~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~--------~~~~~~~~~~~d~~~~~~~~~~~  309 (383)
                      ||+.+  ++|+++.     ..+..|.+|..|++++ .+++|||+||...        .....+++|+||++         
T Consensus       222 yd~~~--~~W~~~~-----~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~---------  284 (341)
T PLN02153        222 FDPAS--GKWTEVE-----TTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE---------  284 (341)
T ss_pred             EEcCC--CcEEecc-----ccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccEEEEEcC---------
Confidence            99999  9999995     4456799999999886 8999999999742        23346799999998         


Q ss_pred             ccccccccccccceeeccCCC--CCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEEEee
Q 016774          310 SMLDSRGLLLNMWKRLRAEGY--KPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  380 (383)
Q Consensus       310 ~~~~~~~~~~~~W~~~~~~~~--~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (383)
                               +.+|+.+...+.  +|.+|..++++.+...++|||+||..+..         +..+|+|.+++-
T Consensus       285 ---------~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~---------~~~~~~~~~~~~  339 (341)
T PLN02153        285 ---------TLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTN---------ERTDDLYFYAVN  339 (341)
T ss_pred             ---------ccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCC---------ccccceEEEecc
Confidence                     678998865433  44555556677776667999999996642         223678887653

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=100.00  E-value=5.2e-38  Score=277.33  Aligned_cols=259  Identities=25%  Similarity=0.412  Sum_probs=217.3

Q ss_pred             CCCCCCcceeEEEECCE--EEEEcCccCCCC---CccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCc
Q 016774           88 GIPSGRFGHTCVVIGDC--LVLFGGINDRGN---RHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNR  162 (383)
Q Consensus        88 ~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~---~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  162 (383)
                      .+|++|...++++...+  |++|||...+++   ..|++|.|++       .+++|+++...+ .|+||.+|.++++..+
T Consensus        62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~-------k~~eWkk~~spn-~P~pRsshq~va~~s~  133 (521)
T KOG1230|consen   62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNT-------KKNEWKKVVSPN-APPPRSSHQAVAVPSN  133 (521)
T ss_pred             CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEec-------cccceeEeccCC-CcCCCccceeEEeccC
Confidence            47889999999987544  999999876554   4799999999       799999998765 8999999999999877


Q ss_pred             EEEEEcccCCCC-----CcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCC---CCCcccc
Q 016774          163 KMVIHAGIGLYG-----LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGV---GYEVLND  234 (383)
Q Consensus       163 ~i~v~GG~~~~~-----~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~---~~~~~~~  234 (383)
                      .+|+|||.-...     -...|+|.||+.++    +|+++.....|.+|.+|-+++. .++|+||||+.+   ...++||
T Consensus       134 ~l~~fGGEfaSPnq~qF~HYkD~W~fd~~tr----kweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyND  208 (521)
T KOG1230|consen  134 ILWLFGGEFASPNQEQFHHYKDLWLFDLKTR----KWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYND  208 (521)
T ss_pred             eEEEeccccCCcchhhhhhhhheeeeeeccc----hheeeccCCCCCCCccceeEEe-eeeEEEEcceecCCCceEEeee
Confidence            999999963322     13679999999999    9999997789999999999999 599999999843   3347999


Q ss_pred             EEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC--------CCCCCCcEEEEEcCCCcccc
Q 016774          235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFTS  306 (383)
Q Consensus       235 v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~--------~~~~~~~~~~~d~~~~~~~~  306 (383)
                      ||+||+++  .+|+++.     +++..|.||.+|+..+..++.|||+||++.        .+...+|+|.++++...   
T Consensus       209 vy~FdLdt--ykW~Kle-----psga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~---  278 (521)
T KOG1230|consen  209 VYAFDLDT--YKWSKLE-----PSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGR---  278 (521)
T ss_pred             eEEEeccc--eeeeecc-----CCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCC---
Confidence            99999999  9999996     677789999999999877999999999963        25567999999998421   


Q ss_pred             cccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEEEeec
Q 016774          307 VQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  381 (383)
Q Consensus       307 ~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (383)
                               +. ...|+++.+.|..|.||.+++.++.. .++-+.|||.-+-... .++....|.+||+.||++.
T Consensus       279 ---------~d-Kw~W~kvkp~g~kPspRsgfsv~va~-n~kal~FGGV~D~eee-eEsl~g~F~NDLy~fdlt~  341 (521)
T KOG1230|consen  279 ---------ED-KWVWTKVKPSGVKPSPRSGFSVAVAK-NHKALFFGGVCDLEEE-EESLSGEFFNDLYFFDLTR  341 (521)
T ss_pred             ---------Cc-ceeEeeccCCCCCCCCCCceeEEEec-CCceEEecceeccccc-chhhhhhhhhhhhheeccc
Confidence                     11 57899999999999999999998885 4589999999663333 4555558999999999863

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=3e-36  Score=290.59  Aligned_cols=293  Identities=18%  Similarity=0.259  Sum_probs=222.4

Q ss_pred             ccceeeeCCEEEEEccccCCCCCCCceEEEEecc-CcccccceEEcCC--CCCCCCcceeEEEECCEEEEEcCccCCCC-
Q 016774           41 SHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGN-DFQGMLKWQKVNS--GIPSGRFGHTCVVIGDCLVLFGGINDRGN-  116 (383)
Q Consensus        41 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-  116 (383)
                      +...+..+++|+.|+|....  .++.+-.|..+. ......+|.++..  ..|.+|.+|++++++++|||+||...... 
T Consensus       113 g~~f~~~~~~ivgf~G~~~~--~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~  190 (470)
T PLN02193        113 GVKFVLQGGKIVGFHGRSTD--VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQP  190 (470)
T ss_pred             CCEEEEcCCeEEEEeccCCC--cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCC
Confidence            34444457899999996433  244443442221 1112359999864  35889999999999999999999854333 


Q ss_pred             CccceeeeecccccCCcccccEEEccCCCCCCCc-cccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceE
Q 016774          117 RHNDTWIGQIACHENLGITLSWRLLDVGSIAPPA-RGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQ  195 (383)
Q Consensus       117 ~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~-r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~  195 (383)
                      ..+++|+||+       .+++|+.++..+..|.+ |.+|+++.+++ +|||+||.... ..++++|+||+.++    +|+
T Consensus       191 ~~~~v~~yD~-------~~~~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~-~~~ndv~~yD~~t~----~W~  257 (470)
T PLN02193        191 IDKHLYVFDL-------ETRTWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDAS-RQYNGFYSFDTTTN----EWK  257 (470)
T ss_pred             eeCcEEEEEC-------CCCEEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCC-CCCccEEEEECCCC----EEE
Confidence            4578999999       68999988766555553 56788888877 99999998543 46899999999999    999


Q ss_pred             Ecc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEc
Q 016774          196 QLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLIL  274 (383)
Q Consensus       196 ~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~  274 (383)
                      +++ ....|.+|..|+++.+ +++|||+||.. ....+++++.||+.+  ++|+.++     ..+..|.+|.+|++++ .
T Consensus       258 ~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~-~~~~~~~~~~yd~~t--~~W~~~~-----~~~~~~~~R~~~~~~~-~  327 (470)
T PLN02193        258 LLTPVEEGPTPRSFHSMAAD-EENVYVFGGVS-ATARLKTLDSYNIVD--KKWFHCS-----TPGDSFSIRGGAGLEV-V  327 (470)
T ss_pred             EcCcCCCCCCCccceEEEEE-CCEEEEECCCC-CCCCcceEEEEECCC--CEEEeCC-----CCCCCCCCCCCcEEEE-E
Confidence            997 2334889999999988 59999999985 344678999999999  9999985     3445778899998886 7


Q ss_pred             CCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcC
Q 016774          275 GGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGG  354 (383)
Q Consensus       275 ~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG  354 (383)
                      +++||++||.++.  ..+++++||+.                  +.+|+++.+.+..|.+|..|+++.+  +++|||+||
T Consensus       328 ~gkiyviGG~~g~--~~~dv~~yD~~------------------t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG  385 (470)
T PLN02193        328 QGKVWVVYGFNGC--EVDDVHYYDPV------------------QDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGG  385 (470)
T ss_pred             CCcEEEEECCCCC--ccCceEEEECC------------------CCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECC
Confidence            8999999998753  36899999998                  7899999877778999999999888  789999999


Q ss_pred             ccCCccccCCCccccccCeeeEEEeec
Q 016774          355 MVDGLVQPADTSGLRFDGRLLLVELVP  381 (383)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (383)
                      ......... ...-.+.+|+|.||+..
T Consensus       386 ~~~~~~~~~-~~~~~~~ndv~~~D~~t  411 (470)
T PLN02193        386 EIAMDPLAH-VGPGQLTDGTFALDTET  411 (470)
T ss_pred             ccCCccccc-cCccceeccEEEEEcCc
Confidence            964221111 11113556788887653

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=292.55  Aligned_cols=276  Identities=33%  Similarity=0.587  Sum_probs=239.8

Q ss_pred             CCCCcccceeeeCCEEEEEccccCCCCCCC-ceEEEEeccCcccccceEEcC--CCCCCCCcceeEEEECCEEEEEcCcc
Q 016774           36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLD-DTWVAYVGNDFQGMLKWQKVN--SGIPSGRFGHTCVVIGDCLVLFGGIN  112 (383)
Q Consensus        36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~-~~~~~~~~~~~~~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~  112 (383)
                      |.+|++|+++.+++++|||||........+ |+|+++....     .|....  ...|.+|++|+++.++++||+|||..
T Consensus        58 p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~-----~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~  132 (482)
T KOG0379|consen   58 PIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQ-----LWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD  132 (482)
T ss_pred             cchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCc-----ccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence            999999999999999999999766544433 6999999554     898753  45688999999999999999999998


Q ss_pred             CCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccC
Q 016774          113 DRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFG  192 (383)
Q Consensus       113 ~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~  192 (383)
                      .....+++++.||+       .+.+|..+...+.+|++|.+|+++..++ ++|||||.+..+...+++|+||+.+.    
T Consensus       133 ~~~~~~~~l~~~d~-------~t~~W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~~~ndl~i~d~~~~----  200 (482)
T KOG0379|consen  133 KKYRNLNELHSLDL-------STRTWSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGDSLNDLHIYDLETS----  200 (482)
T ss_pred             CCCCChhheEeccC-------CCCcEEEecCcCCCCCCcccceEEEECC-EEEEECCccCcccceeeeeeeccccc----
Confidence            65666899999999       5999999999998999999999999997 99999999877668999999999998    


Q ss_pred             ceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEE
Q 016774          193 SWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSAT  271 (383)
Q Consensus       193 ~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~  271 (383)
                      +|+++. .++.|.||.+|+++++ +++++|+||.+....+++|+|.||+.+  ..|.++.     ..+..|.+|++|+.+
T Consensus       201 ~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~~--~~W~~~~-----~~g~~p~~R~~h~~~  272 (482)
T KOG0379|consen  201 TWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLST--WEWKLLP-----TGGDLPSPRSGHSLT  272 (482)
T ss_pred             cceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeeccc--ceeeecc-----ccCCCCCCcceeeeE
Confidence            999999 7788999999999999 588898888876778999999999999  9999874     789999999999999


Q ss_pred             EEcCCEEEEEcCcCCCCC-CCCcEEEEEcCCCcccccccccccccccccccceeeccCC-CCCCCccceeeeecCCC--c
Q 016774          272 LILGGRVLIYGGEDSARR-RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEG-YKPNCRSFHRACPDYSG--R  347 (383)
Q Consensus       272 ~~~~~~l~i~GG~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~~p~~r~~~~~~~~~~~--~  347 (383)
                      + .+.+++|+||...... .+.++|.|+++                  +..|..+...+ ..|.+|..|.++.....  .
T Consensus       273 ~-~~~~~~l~gG~~~~~~~~l~~~~~l~~~------------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (482)
T KOG0379|consen  273 V-SGDHLLLFGGGTDPKQEPLGDLYGLDLE------------------TLVWSKVESVGVVRPSPRLGHAAELIDELGKD  333 (482)
T ss_pred             E-ECCEEEEEcCCccccccccccccccccc------------------ccceeeeeccccccccccccccceeeccCCcc
Confidence            4 9999999999977533 68899999998                  67899988766 77889999888877333  3


Q ss_pred             EEEEEcCc
Q 016774          348 YLYVFGGM  355 (383)
Q Consensus       348 ~l~v~GG~  355 (383)
                      .+.++||.
T Consensus       334 ~~~~~~~~  341 (482)
T KOG0379|consen  334 GLGILGGN  341 (482)
T ss_pred             ceeeecCc
Confidence            56666764

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=2.7e-35  Score=274.16  Aligned_cols=260  Identities=22%  Similarity=0.337  Sum_probs=199.6

Q ss_pred             cccceEEcCC---CCCCCCcceeEEEECCEEEEEcCccCC-CCCccceeeeecccccCCcccccEEEccCCCCCCCc-cc
Q 016774           78 GMLKWQKVNS---GIPSGRFGHTCVVIGDCLVLFGGINDR-GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPA-RG  152 (383)
Q Consensus        78 ~~~~W~~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~-r~  152 (383)
                      ...+|.++..   ..|.+|.+|++++++++|||+||.... ....+++++||+       .+++|+++.+.+..|.. +.
T Consensus         5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~-------~~~~W~~~~~~~~~p~~~~~   77 (341)
T PLN02153          5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDF-------NTHTWSIAPANGDVPRISCL   77 (341)
T ss_pred             cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEEC-------CCCEEEEcCccCCCCCCccC
Confidence            3448998864   268899999999999999999998543 334689999999       68999998765434443 34


Q ss_pred             cceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEccc---CCCCCCCCCceEEEEcCCEEEEEcccCCCC
Q 016774          153 AHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVT---HPSPPARSGHSLTRIGGNRTVLFGGRGVGY  229 (383)
Q Consensus       153 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~---~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~  229 (383)
                      +|+++.+++ +||+|||.... ..++++++||+.++    +|+.++.   ...|.+|..|+++.. +++|||+||.....
T Consensus        78 ~~~~~~~~~-~iyv~GG~~~~-~~~~~v~~yd~~t~----~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~  150 (341)
T PLN02153         78 GVRMVAVGT-KLYIFGGRDEK-REFSDFYSYDTVKN----EWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKGG  150 (341)
T ss_pred             ceEEEEECC-EEEEECCCCCC-CccCcEEEEECCCC----EEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCCC
Confidence            677888887 99999998544 35789999999998    9999872   123889999999988 59999999985321


Q ss_pred             -----CccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC-------CCCCCcEEEE
Q 016774          230 -----EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA-------RRRKDDFWVL  297 (383)
Q Consensus       230 -----~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~-------~~~~~~~~~~  297 (383)
                           ..++++++||+.+  ++|+.++     ..+..|.+|.+|++++ .+++|||+||....       ....+++++|
T Consensus       151 ~~~~~~~~~~v~~yd~~~--~~W~~l~-----~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~y  222 (341)
T PLN02153        151 LMKTPERFRTIEAYNIAD--GKWVQLP-----DPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFF  222 (341)
T ss_pred             ccCCCcccceEEEEECCC--CeEeeCC-----CCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEE
Confidence                 2457899999999  9999985     3444568899998886 89999999997521       1225789999


Q ss_pred             EcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEE
Q 016774          298 DTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLV  377 (383)
Q Consensus       298 d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~  377 (383)
                      |++                  +.+|+++...+.+|.+|..|+++++  +++||||||....... .+.....+.+++|.|
T Consensus       223 d~~------------------~~~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~~~-~~~~~~~~~n~v~~~  281 (341)
T PLN02153        223 DPA------------------SGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPDLK-GHLGPGTLSNEGYAL  281 (341)
T ss_pred             EcC------------------CCcEEeccccCCCCCCcceeeeEEE--CCEEEEECcccCCccc-cccccccccccEEEE
Confidence            988                  7899999877788999999999888  7899999998532221 111112345677777


Q ss_pred             Eee
Q 016774          378 ELV  380 (383)
Q Consensus       378 ~~~  380 (383)
                      |++
T Consensus       282 d~~  284 (341)
T PLN02153        282 DTE  284 (341)
T ss_pred             EcC
Confidence            764

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=4.1e-35  Score=271.04  Aligned_cols=273  Identities=16%  Similarity=0.243  Sum_probs=204.5

Q ss_pred             CCCcccceeeeCCEEEEEccccCCCC---------CCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEE
Q 016774           37 NPRASHSLNFVSNCLVLFGGGCEGGR---------HLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVL  107 (383)
Q Consensus        37 ~~r~~~~~~~~~~~i~v~GG~~~~~~---------~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv  107 (383)
                      ..++++.++++++.|||+||...+..         ..+++++++. .  ....+|..+. .+|.+|..+++++++++||+
T Consensus         2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~-~--~~~~~W~~~~-~lp~~r~~~~~~~~~~~lyv   77 (323)
T TIGR03548         2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKD-E--NSNLKWVKDG-QLPYEAAYGASVSVENGIYY   77 (323)
T ss_pred             CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEec-C--CCceeEEEcc-cCCccccceEEEEECCEEEE
Confidence            36788999999999999999865532         3457777762 1  1234799887 47889988888999999999


Q ss_pred             EcCccCCCCCccceeeeecccccCCcccccEE-EccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEecc
Q 016774          108 FGGINDRGNRHNDTWIGQIACHENLGITLSWR-LLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELS  186 (383)
Q Consensus       108 ~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~  186 (383)
                      +||... ...++++++||+       .+.+|+ +....+.+|.+|..|+++.+++ +|||+||.. .+..++++++||+.
T Consensus        78 iGG~~~-~~~~~~v~~~d~-------~~~~w~~~~~~~~~lp~~~~~~~~~~~~~-~iYv~GG~~-~~~~~~~v~~yd~~  147 (323)
T TIGR03548        78 IGGSNS-SERFSSVYRITL-------DESKEELICETIGNLPFTFENGSACYKDG-TLYVGGGNR-NGKPSNKSYLFNLE  147 (323)
T ss_pred             EcCCCC-CCCceeEEEEEE-------cCCceeeeeeEcCCCCcCccCceEEEECC-EEEEEeCcC-CCccCceEEEEcCC
Confidence            999864 445789999999       477772 1122233788999999988887 999999974 33457899999999


Q ss_pred             CCcccCceEEcccCCCC-CCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCc
Q 016774          187 ENFCFGSWQQLVTHPSP-PARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPR  265 (383)
Q Consensus       187 ~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r  265 (383)
                      ++    +|++++  ++| .+|..|+++.+ +++|||+||...  ....++++||+.+  ++|+.+...   .....|..+
T Consensus       148 ~~----~W~~~~--~~p~~~r~~~~~~~~-~~~iYv~GG~~~--~~~~~~~~yd~~~--~~W~~~~~~---~~~~~p~~~  213 (323)
T TIGR03548       148 TQ----EWFELP--DFPGEPRVQPVCVKL-QNELYVFGGGSN--IAYTDGYKYSPKK--NQWQKVADP---TTDSEPISL  213 (323)
T ss_pred             CC----CeeECC--CCCCCCCCcceEEEE-CCEEEEEcCCCC--ccccceEEEecCC--CeeEECCCC---CCCCCceec
Confidence            99    999997  555 47888888888 599999999853  2346789999999  999998410   011234445


Q ss_pred             eeeEEEEEcCCEEEEEcCcCCCC-------------------------------CCCCcEEEEEcCCCcccccccccccc
Q 016774          266 VGHSATLILGGRVLIYGGEDSAR-------------------------------RRKDDFWVLDTKAIPFTSVQQSMLDS  314 (383)
Q Consensus       266 ~~~~~~~~~~~~l~i~GG~~~~~-------------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~  314 (383)
                      .+++++++.+++||++||.+...                               ...+++++||++              
T Consensus       214 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~--------------  279 (323)
T TIGR03548       214 LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVR--------------  279 (323)
T ss_pred             cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECC--------------
Confidence            55665555789999999987421                               012567777777              


Q ss_pred             cccccccceeeccCCCCC-CCccceeeeecCCCcEEEEEcCccCCcc
Q 016774          315 RGLLLNMWKRLRAEGYKP-NCRSFHRACPDYSGRYLYVFGGMVDGLV  360 (383)
Q Consensus       315 ~~~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~~~l~v~GG~~~~~~  360 (383)
                          +++|+.+..   +| .+|.+++++.+  +++||++||.....+
T Consensus       280 ----~~~W~~~~~---~p~~~r~~~~~~~~--~~~iyv~GG~~~pg~  317 (323)
T TIGR03548       280 ----TGKWKSIGN---SPFFARCGAALLLT--GNNIFSINGELKPGV  317 (323)
T ss_pred             ----CCeeeEccc---ccccccCchheEEE--CCEEEEEeccccCCc
Confidence                789998864   55 58888888877  889999999865443

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=5.7e-35  Score=272.88  Aligned_cols=266  Identities=18%  Similarity=0.257  Sum_probs=198.5

Q ss_pred             CCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCC-CCCcceeEEEECCEEEEEcCccC
Q 016774           35 LPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIP-SGRFGHTCVVIGDCLVLFGGIND  113 (383)
Q Consensus        35 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~  113 (383)
                      +|.||..+++++++++|||+||..     .++++++++..   .+.+|.+++. +| .+|..|++++++++|||+||...
T Consensus         4 lp~~~~~~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~---~~~~W~~l~~-~p~~~R~~~~~~~~~~~iYv~GG~~~   74 (346)
T TIGR03547         4 LPVGFKNGTGAIIGDKVYVGLGSA-----GTSWYKLDLKK---PSKGWQKIAD-FPGGPRNQAVAAAIDGKLYVFGGIGK   74 (346)
T ss_pred             CCccccCceEEEECCEEEEEcccc-----CCeeEEEECCC---CCCCceECCC-CCCCCcccceEEEECCEEEEEeCCCC
Confidence            388999999989999999999952     25788888632   3348999974 55 58999999999999999999853


Q ss_pred             CC-----CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC--------------
Q 016774          114 RG-----NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG--------------  174 (383)
Q Consensus       114 ~~-----~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~--------------  174 (383)
                      ..     ..++++++||+       .+++|+++..  ..|.+|.+|+++...+++||++||.+...              
T Consensus        75 ~~~~~~~~~~~~v~~Yd~-------~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~  145 (346)
T TIGR03547        75 ANSEGSPQVFDDVYRYDP-------KKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKD  145 (346)
T ss_pred             CCCCCcceecccEEEEEC-------CCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCcc
Confidence            22     24788999999       6999999863  25677778877733444999999975210              


Q ss_pred             -------------------CcccceEEEeccCCcccCceEEcccCCCCC-CCCCceEEEEcCCEEEEEcccCCCCCcccc
Q 016774          175 -------------------LRLGDTWVLELSENFCFGSWQQLVTHPSPP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLND  234 (383)
Q Consensus       175 -------------------~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~  234 (383)
                                         ..++++++||+.++    +|+.++  ++|. +|..|+++.+ +++|||+||.........+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~----~W~~~~--~~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~  218 (346)
T TIGR03547       146 SEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN----QWRNLG--ENPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAE  218 (346)
T ss_pred             chhhhhhHHHHhCCChhHcCccceEEEEECCCC----ceeECc--cCCCCcCCCceEEEE-CCEEEEEeeeeCCCccchh
Confidence                               01378999999999    999997  6675 6888888888 5999999998533333356


Q ss_pred             EEEEEcccCccceEEecccccCCCCCCCCCc-------eeeEEEEEcCCEEEEEcCcCCCCC----------------CC
Q 016774          235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPR-------VGHSATLILGGRVLIYGGEDSARR----------------RK  291 (383)
Q Consensus       235 v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r-------~~~~~~~~~~~~l~i~GG~~~~~~----------------~~  291 (383)
                      ++.|+++.+.++|+.+.        .+|.+|       .+|++++ .+++||++||.+....                ..
T Consensus       219 ~~~y~~~~~~~~W~~~~--------~m~~~r~~~~~~~~~~~a~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  289 (346)
T TIGR03547       219 VKQYLFTGGKLEWNKLP--------PLPPPKSSSQEGLAGAFAGI-SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKA  289 (346)
T ss_pred             eEEEEecCCCceeeecC--------CCCCCCCCccccccEEeeeE-ECCEEEEeecCCCCCchhhhhcCCccccCCCCce
Confidence            77776643227999983        455544       4555554 8999999999863211                11


Q ss_pred             CcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774          292 DDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  357 (383)
Q Consensus       292 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~  357 (383)
                      ..+.+||++                  +++|+.+.+   +|.+|..++++++  +++|||+||...
T Consensus       290 ~~~e~yd~~------------------~~~W~~~~~---lp~~~~~~~~~~~--~~~iyv~GG~~~  332 (346)
T TIGR03547       290 WSSEVYALD------------------NGKWSKVGK---LPQGLAYGVSVSW--NNGVLLIGGENS  332 (346)
T ss_pred             eEeeEEEec------------------CCcccccCC---CCCCceeeEEEEc--CCEEEEEeccCC
Confidence            245667766                  789998865   8889988877666  899999999854

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=5e-35  Score=285.58  Aligned_cols=260  Identities=23%  Similarity=0.332  Sum_probs=226.7

Q ss_pred             CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCC
Q 016774           36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRG  115 (383)
Q Consensus        36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  115 (383)
                      +.+|....- ...+.||++||........+.+..|++..+     +|..+. .+|.+|..+++++++++||++||.+.+.
T Consensus       273 ~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-----~w~~~a-~m~~~r~~~~~~~~~~~lYv~GG~~~~~  345 (571)
T KOG4441|consen  273 QSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTN-----EWSSLA-PMPSPRCRVGVAVLNGKLYVVGGYDSGS  345 (571)
T ss_pred             cCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcC-----cEeecC-CCCcccccccEEEECCEEEEEccccCCC
Confidence            445544443 566899999997765677888899999655     999998 4889999999999999999999997545


Q ss_pred             CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceE
Q 016774          116 NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQ  195 (383)
Q Consensus       116 ~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~  195 (383)
                      ..++.+++||+       .+++|..+++   +..+|..++++.+++ .||+.||.+.. ..++.+.+||+.++    +|+
T Consensus       346 ~~l~~ve~YD~-------~~~~W~~~a~---M~~~R~~~~v~~l~g-~iYavGG~dg~-~~l~svE~YDp~~~----~W~  409 (571)
T KOG4441|consen  346 DRLSSVERYDP-------RTNQWTPVAP---MNTKRSDFGVAVLDG-KLYAVGGFDGE-KSLNSVECYDPVTN----KWT  409 (571)
T ss_pred             cccceEEEecC-------CCCceeccCC---ccCccccceeEEECC-EEEEEeccccc-cccccEEEecCCCC----ccc
Confidence            67899999999       5889999877   779999999999998 99999999633 57889999999999    999


Q ss_pred             EcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcC
Q 016774          196 QLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILG  275 (383)
Q Consensus       196 ~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~  275 (383)
                      .+.  +++.+|.+|+++.+ +++||++||.+.....++.+.+||+.+  ++|+.+        ..++.+|.++++++ .+
T Consensus       410 ~va--~m~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t--~~W~~~--------~~M~~~R~~~g~a~-~~  475 (571)
T KOG4441|consen  410 PVA--PMLTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPET--NTWTLI--------APMNTRRSGFGVAV-LN  475 (571)
T ss_pred             ccC--CCCcceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCC--Cceeec--------CCcccccccceEEE-EC
Confidence            998  78889999999999 599999999976666899999999999  999999        68999999999887 99


Q ss_pred             CEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCc
Q 016774          276 GRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM  355 (383)
Q Consensus       276 ~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~  355 (383)
                      ++||++||+++ ....+.+.+||++                  +++|+.+.+   ++.+|..++++++  ++++|++||.
T Consensus       476 ~~iYvvGG~~~-~~~~~~VE~ydp~------------------~~~W~~v~~---m~~~rs~~g~~~~--~~~ly~vGG~  531 (571)
T KOG4441|consen  476 GKIYVVGGFDG-TSALSSVERYDPE------------------TNQWTMVAP---MTSPRSAVGVVVL--GGKLYAVGGF  531 (571)
T ss_pred             CEEEEECCccC-CCccceEEEEcCC------------------CCceeEccc---CccccccccEEEE--CCEEEEEecc
Confidence            99999999998 5557779999998                  789999955   8899999999888  8999999996


Q ss_pred             c
Q 016774          356 V  356 (383)
Q Consensus       356 ~  356 (383)
                      .
T Consensus       532 ~  532 (571)
T KOG4441|consen  532 D  532 (571)
T ss_pred             c
Confidence            3

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=5.1e-35  Score=285.54  Aligned_cols=252  Identities=19%  Similarity=0.301  Sum_probs=222.9

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGR   93 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r   93 (383)
                      +.|++.+++|..++..      |.+|..+++++++++||++||.+.+...++.+++||...+     +|++++ .++.+|
T Consensus       304 e~yd~~~~~w~~~a~m------~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~-----~W~~~a-~M~~~R  371 (571)
T KOG4441|consen  304 ECYDPKTNEWSSLAPM------PSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTN-----QWTPVA-PMNTKR  371 (571)
T ss_pred             EEecCCcCcEeecCCC------CcccccccEEEECCEEEEEccccCCCcccceEEEecCCCC-----ceeccC-CccCcc
Confidence            5789999999999876      7899999999999999999997656678899999999665     899987 489999


Q ss_pred             cceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCC
Q 016774           94 FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLY  173 (383)
Q Consensus        94 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~  173 (383)
                      .+++++++++.||++||.+ +...++.+++||+       .+++|+.+.+   ++.+|++|+++..++ +||++||.+..
T Consensus       372 ~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp-------~~~~W~~va~---m~~~r~~~gv~~~~g-~iYi~GG~~~~  439 (571)
T KOG4441|consen  372 SDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDP-------VTNKWTPVAP---MLTRRSGHGVAVLGG-KLYIIGGGDGS  439 (571)
T ss_pred             ccceeEEECCEEEEEeccc-cccccccEEEecC-------CCCcccccCC---CCcceeeeEEEEECC-EEEEEcCcCCC
Confidence            9999999999999999987 4566889999999       6999999877   667999999999988 99999998655


Q ss_pred             CCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEeccc
Q 016774          174 GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYE  253 (383)
Q Consensus       174 ~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~  253 (383)
                      ...++.+.+||+.++    +|+.++  +++.+|.+|.++++ +++||++||.+. ......+.+||+.+  ++|+.+   
T Consensus       440 ~~~l~sve~YDP~t~----~W~~~~--~M~~~R~~~g~a~~-~~~iYvvGG~~~-~~~~~~VE~ydp~~--~~W~~v---  506 (571)
T KOG4441|consen  440 SNCLNSVECYDPETN----TWTLIA--PMNTRRSGFGVAVL-NGKIYVVGGFDG-TSALSSVERYDPET--NQWTMV---  506 (571)
T ss_pred             ccccceEEEEcCCCC----ceeecC--CcccccccceEEEE-CCEEEEECCccC-CCccceEEEEcCCC--CceeEc---
Confidence            558999999999999    999999  89999999999999 699999999975 55667799999999  999999   


Q ss_pred             ccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeecc
Q 016774          254 LQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRA  327 (383)
Q Consensus       254 ~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  327 (383)
                           ..++.+|..+++++ .++++|++||+++. ..++.+..||++                  +++|+.+..
T Consensus       507 -----~~m~~~rs~~g~~~-~~~~ly~vGG~~~~-~~l~~ve~ydp~------------------~d~W~~~~~  555 (571)
T KOG4441|consen  507 -----APMTSPRSAVGVVV-LGGKLYAVGGFDGN-NNLNTVECYDPE------------------TDTWTEVTE  555 (571)
T ss_pred             -----ccCccccccccEEE-ECCEEEEEecccCc-cccceeEEcCCC------------------CCceeeCCC
Confidence                 67888888888776 99999999998874 457888888887                  789998854

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=248.68  Aligned_cols=246  Identities=22%  Similarity=0.359  Sum_probs=209.5

Q ss_pred             hccccccceeeeec-------CCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEc--
Q 016774           15 VTQLESVSCRNISD-------ADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKV--   85 (383)
Q Consensus        15 ~~~~~~~~W~~~~~-------~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--   85 (383)
                      +++..+..|.++++       ..+...+|..|.+|+.+.+++++||+||.++....++-++.||+     +++.|++.  
T Consensus        48 ~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp-----~t~~W~~p~v  122 (392)
T KOG4693|consen   48 VLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDP-----ETNVWKKPEV  122 (392)
T ss_pred             EeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecc-----ccccccccce
Confidence            44567788988755       12333457889999999999999999999888888898999998     45599975  


Q ss_pred             CCCCCCCCcceeEEEECCEEEEEcCccCC-CCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEE
Q 016774           86 NSGIPSGRFGHTCVVIGDCLVLFGGINDR-GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKM  164 (383)
Q Consensus        86 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i  164 (383)
                      ++..|.+|.+|++|++++..|||||..+. ....++++++|+       .+.+|..+.+.+.+|.-|..|+++.++. .+
T Consensus       123 ~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~-------~TmtWr~~~Tkg~PprwRDFH~a~~~~~-~M  194 (392)
T KOG4693|consen  123 EGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDF-------ATMTWREMHTKGDPPRWRDFHTASVIDG-MM  194 (392)
T ss_pred             eeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEec-------cceeeeehhccCCCchhhhhhhhhhccc-eE
Confidence            45689999999999999999999998654 345789999999       6999999999999999999999999986 99


Q ss_pred             EEEcccCCCC--------CcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCC-CCcccc
Q 016774          165 VIHAGIGLYG--------LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVG-YEVLND  234 (383)
Q Consensus       165 ~v~GG~~~~~--------~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~-~~~~~~  234 (383)
                      |||||..+..        ..-+.+..+|+.|+    .|...+ ....|..|..|++..+ +++||||||.+.. ..-++|
T Consensus       195 YiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~----aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~Hfnd  269 (392)
T KOG4693|consen  195 YIFGGRSDESGPFHSIHEQYCDTIMALDLATG----AWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFND  269 (392)
T ss_pred             EEeccccccCCCccchhhhhcceeEEEecccc----ccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcc
Confidence            9999986432        23567889999999    999988 5567899999999999 6999999999532 235789


Q ss_pred             EEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC
Q 016774          235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS  286 (383)
Q Consensus       235 v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~  286 (383)
                      +|.||+.+  ..|+.|.     ..+..|.+|+.+|+++ .++++|+|||.+.
T Consensus       270 Ly~FdP~t--~~W~~I~-----~~Gk~P~aRRRqC~~v-~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  270 LYCFDPKT--SMWSVIS-----VRGKYPSARRRQCSVV-SGGKVYLFGGTSP  313 (392)
T ss_pred             eeeccccc--chheeee-----ccCCCCCcccceeEEE-ECCEEEEecCCCC
Confidence            99999999  9999996     7899999999999997 9999999999864

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=284.32  Aligned_cols=250  Identities=14%  Similarity=0.144  Sum_probs=209.0

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGR   93 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r   93 (383)
                      ..|++.+.+|..+++.      |.+|..+++++++++|||+||........+++++|++..+     +|..+++ +|.+|
T Consensus       275 ~~yd~~~~~W~~l~~m------p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-----~W~~~~~-m~~~R  342 (557)
T PHA02713        275 LVYNINTMEYSVISTI------PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENK-----IHVELPP-MIKNR  342 (557)
T ss_pred             EEEeCCCCeEEECCCC------CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCC-----eEeeCCC-Ccchh
Confidence            4589999999999754      7789999999999999999996544455788999999655     9999874 78899


Q ss_pred             cceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCC
Q 016774           94 FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLY  173 (383)
Q Consensus        94 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~  173 (383)
                      ..+++++++++||++||.+. ....+++++||+       .+++|+.+++   +|.+|..|+++..++ +||++||.+..
T Consensus       343 ~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp-------~~~~W~~~~~---mp~~r~~~~~~~~~g-~IYviGG~~~~  410 (557)
T PHA02713        343 CRFSLAVIDDTIYAIGGQNG-TNVERTIECYTM-------GDDKWKMLPD---MPIALSSYGMCVLDQ-YIYIIGGRTEH  410 (557)
T ss_pred             hceeEEEECCEEEEECCcCC-CCCCceEEEEEC-------CCCeEEECCC---CCcccccccEEEECC-EEEEEeCCCcc
Confidence            99999999999999999854 345778999999       6999999876   889999999988877 99999997532


Q ss_pred             C-----------------CcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEE
Q 016774          174 G-----------------LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW  236 (383)
Q Consensus       174 ~-----------------~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~  236 (383)
                      .                 ..++.+++||+.++    +|+.++  +++.+|..++++++ +++||++||........+.++
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td----~W~~v~--~m~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve  483 (557)
T PHA02713        411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN----IWETLP--NFWTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIF  483 (557)
T ss_pred             cccccccccccccccccccccceEEEECCCCC----eEeecC--CCCcccccCcEEEE-CCEEEEEeCCCCCCccceeEE
Confidence            1                 12578999999999    999998  88899999999999 599999999853333345689


Q ss_pred             EEEcccCcc-ceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCccccccccccccc
Q 016774          237 FLDVYEGFF-KWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSR  315 (383)
Q Consensus       237 ~~~~~~~~~-~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  315 (383)
                      +||+++  . +|+.+        ..+|.+|..+++++ .+++||++||.++.    ..+.+||+.               
T Consensus       484 ~Ydp~~--~~~W~~~--------~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~----~~~e~yd~~---------------  533 (557)
T PHA02713        484 RYNTNT--YNGWELI--------TTTESRLSALHTIL-HDNTIMMLHCYESY----MLQDTFNVY---------------  533 (557)
T ss_pred             EecCCC--CCCeeEc--------cccCcccccceeEE-ECCEEEEEeeecce----eehhhcCcc---------------
Confidence            999996  5 89999        68999999999887 89999999999873    356677776               


Q ss_pred             ccccccceeecc
Q 016774          316 GLLLNMWKRLRA  327 (383)
Q Consensus       316 ~~~~~~W~~~~~  327 (383)
                         +++|+.+.+
T Consensus       534 ---~~~W~~~~~  542 (557)
T PHA02713        534 ---TYEWNHICH  542 (557)
T ss_pred             ---cccccchhh
Confidence               889998755

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=9.3e-34  Score=266.71  Aligned_cols=264  Identities=19%  Similarity=0.221  Sum_probs=195.9

Q ss_pred             CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccC-C
Q 016774           36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGIND-R  114 (383)
Q Consensus        36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~  114 (383)
                      |.||..+++++++++|||+||..     .+.++.+++..   .+.+|.+++..+..+|.+|+++.++++|||+||... .
T Consensus        26 P~~~~~~~~~~~~~~iyv~gG~~-----~~~~~~~d~~~---~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~   97 (376)
T PRK14131         26 PVPFKNGTGAIDNNTVYVGLGSA-----GTSWYKLDLNA---PSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTN   97 (376)
T ss_pred             CcCccCCeEEEECCEEEEEeCCC-----CCeEEEEECCC---CCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCC
Confidence            88998889999999999999952     23578888742   234899987433358999999999999999999864 1


Q ss_pred             ----CCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC----------------
Q 016774          115 ----GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG----------------  174 (383)
Q Consensus       115 ----~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~----------------  174 (383)
                          ...++++|+||+       .+++|+++..  ..|.++.+|+++.+.+++||++||.....                
T Consensus        98 ~~~~~~~~~~v~~YD~-------~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~  168 (376)
T PRK14131         98 SEGSPQVFDDVYKYDP-------KTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKT  168 (376)
T ss_pred             CCCceeEcccEEEEeC-------CCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchh
Confidence                134689999999       6999999874  24677788887774455999999974210                


Q ss_pred             -----------------CcccceEEEeccCCcccCceEEcccCCCCC-CCCCceEEEEcCCEEEEEcccCCCCCccccEE
Q 016774          175 -----------------LRLGDTWVLELSENFCFGSWQQLVTHPSPP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW  236 (383)
Q Consensus       175 -----------------~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~  236 (383)
                                       ...+++++||+.++    +|+.+.  ++|. +|..|+++.+ +++||++||.........+++
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~----~W~~~~--~~p~~~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~  241 (376)
T PRK14131        169 PKDKINDAYFDKKPEDYFFNKEVLSYDPSTN----QWKNAG--ESPFLGTAGSAVVIK-GNKLWLINGEIKPGLRTDAVK  241 (376)
T ss_pred             hhhhhHHHHhcCChhhcCcCceEEEEECCCC----eeeECC--cCCCCCCCcceEEEE-CCEEEEEeeeECCCcCChhhe
Confidence                             02478999999999    999987  6674 6788888888 599999999754333345566


Q ss_pred             EE--EcccCccceEEecccccCCCCCCCCCce--------eeEEEEEcCCEEEEEcCcCCCCCC-------------C--
Q 016774          237 FL--DVYEGFFKWVQIPYELQNIPAGFSLPRV--------GHSATLILGGRVLIYGGEDSARRR-------------K--  291 (383)
Q Consensus       237 ~~--~~~~~~~~W~~i~~~~~~~~~~~p~~r~--------~~~~~~~~~~~l~i~GG~~~~~~~-------------~--  291 (383)
                      .|  |+++  .+|+.+.        .+|.+|.        ++.++ +.+++|||+||.+....+             .  
T Consensus       242 ~~~~~~~~--~~W~~~~--------~~p~~~~~~~~~~~~~~~a~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  310 (376)
T PRK14131        242 QGKFTGNN--LKWQKLP--------DLPPAPGGSSQEGVAGAFAG-YSNGVLLVAGGANFPGARENYQNGKLYAHEGLKK  310 (376)
T ss_pred             EEEecCCC--cceeecC--------CCCCCCcCCcCCccceEece-eECCEEEEeeccCCCCChhhhhcCCcccccCCcc
Confidence            54  5567  8999983        4555542        22234 389999999998632210             1  


Q ss_pred             -CcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774          292 -DDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  357 (383)
Q Consensus       292 -~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~  357 (383)
                       ..+.+||++                  +++|+.+..   +|.+|..++++++  +++|||+||...
T Consensus       311 ~~~~e~yd~~------------------~~~W~~~~~---lp~~r~~~~av~~--~~~iyv~GG~~~  354 (376)
T PRK14131        311 SWSDEIYALV------------------NGKWQKVGE---LPQGLAYGVSVSW--NNGVLLIGGETA  354 (376)
T ss_pred             eeehheEEec------------------CCcccccCc---CCCCccceEEEEe--CCEEEEEcCCCC
Confidence             234567776                  789998754   8999998887777  889999999854

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=100.00  E-value=3.6e-34  Score=275.40  Aligned_cols=231  Identities=30%  Similarity=0.511  Sum_probs=206.2

Q ss_pred             CCCCCCCcceeEEEECCEEEEEcCccCCCCCcc-ceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEE
Q 016774           87 SGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHN-DTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMV  165 (383)
Q Consensus        87 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~  165 (383)
                      ...|.+|.+|+++.+++++|||||........+ ++|++|+       .+..|.+....+..|.+|++|+++.+++ +||
T Consensus        55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~-------~~~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~  126 (482)
T KOG0379|consen   55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDL-------ESQLWTKPAATGDEPSPRYGHSLSAVGD-KLY  126 (482)
T ss_pred             CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeec-------CCcccccccccCCCCCcccceeEEEECC-eEE
Confidence            346889999999999999999999865443333 5999999       6899999999999999999999999998 999


Q ss_pred             EEcccCCCCCcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCc
Q 016774          166 IHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGF  244 (383)
Q Consensus       166 v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~  244 (383)
                      +|||.......+++++.||+.|+    +|..+. .+..|++|.+|+++.++ +++|||||.+......+++|+||+++  
T Consensus       127 lfGG~~~~~~~~~~l~~~d~~t~----~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~--  199 (482)
T KOG0379|consen  127 LFGGTDKKYRNLNELHSLDLSTR----TWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLET--  199 (482)
T ss_pred             EEccccCCCCChhheEeccCCCC----cEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeecccc--
Confidence            99998754556899999999999    999998 55679999999999995 99999999986666899999999999  


Q ss_pred             cceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCccccccccccccccccccccee
Q 016774          245 FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKR  324 (383)
Q Consensus       245 ~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~  324 (383)
                      .+|+++.     ..+..|.||.+|++++ .+++++++||.+.....++|+|+||+.                  +..|..
T Consensus       200 ~~W~~~~-----~~g~~P~pR~gH~~~~-~~~~~~v~gG~~~~~~~l~D~~~ldl~------------------~~~W~~  255 (482)
T KOG0379|consen  200 STWSELD-----TQGEAPSPRYGHAMVV-VGNKLLVFGGGDDGDVYLNDVHILDLS------------------TWEWKL  255 (482)
T ss_pred             ccceecc-----cCCCCCCCCCCceEEE-ECCeEEEEeccccCCceecceEeeecc------------------cceeee
Confidence            9999996     7889999999999997 899999999988667789999999999                  678998


Q ss_pred             eccCCCCCCCccceeeeecCCCcEEEEEcCccCC
Q 016774          325 LRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDG  358 (383)
Q Consensus       325 ~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~  358 (383)
                      +.+.+..|.+|++|.++..  +++++|+||..+.
T Consensus       256 ~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~  287 (482)
T KOG0379|consen  256 LPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP  287 (482)
T ss_pred             ccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence            8888999999999999855  8999999999775

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-33  Score=274.74  Aligned_cols=247  Identities=14%  Similarity=0.143  Sum_probs=203.1

Q ss_pred             EEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccc
Q 016774           50 CLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACH  129 (383)
Q Consensus        50 ~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~  129 (383)
                      .+++.||. . ......+++|++..+     +|..++ .+|.+|..|++++++++||++||........+++++||+   
T Consensus       259 ~l~~~~g~-~-~~~~~~v~~yd~~~~-----~W~~l~-~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~---  327 (557)
T PHA02713        259 CLVCHDTK-Y-NVCNPCILVYNINTM-----EYSVIS-TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINI---  327 (557)
T ss_pred             EEEEecCc-c-ccCCCCEEEEeCCCC-----eEEECC-CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEEC---
Confidence            45555552 1 122346788998555     999997 478899999999999999999997544445788999999   


Q ss_pred             cCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCc
Q 016774          130 ENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGH  209 (383)
Q Consensus       130 ~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~  209 (383)
                          .+++|..+++   +|.+|..|+++.+++ +||++||.+.. ..++++++||+.++    +|+.++  ++|.+|..|
T Consensus       328 ----~~n~W~~~~~---m~~~R~~~~~~~~~g-~IYviGG~~~~-~~~~sve~Ydp~~~----~W~~~~--~mp~~r~~~  392 (557)
T PHA02713        328 ----ENKIHVELPP---MIKNRCRFSLAVIDD-TIYAIGGQNGT-NVERTIECYTMGDD----KWKMLP--DMPIALSSY  392 (557)
T ss_pred             ----CCCeEeeCCC---CcchhhceeEEEECC-EEEEECCcCCC-CCCceEEEEECCCC----eEEECC--CCCcccccc
Confidence                5899998876   789999999998888 99999998533 35788999999999    999998  889999999


Q ss_pred             eEEEEcCCEEEEEcccCCCC-----------------CccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEE
Q 016774          210 SLTRIGGNRTVLFGGRGVGY-----------------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL  272 (383)
Q Consensus       210 ~~~~~~~~~i~v~GG~~~~~-----------------~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~  272 (383)
                      +++.+ +++||++||.....                 ...+.+++||+.+  ++|+.+        ..++.+|..+++++
T Consensus       393 ~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t--d~W~~v--------~~m~~~r~~~~~~~  461 (557)
T PHA02713        393 GMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN--NIWETL--------PNFWTGTIRPGVVS  461 (557)
T ss_pred             cEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCC--CeEeec--------CCCCcccccCcEEE
Confidence            99998 59999999985321                 1257899999999  999998        57889999998886


Q ss_pred             EcCCEEEEEcCcCCCCCCCCcEEEEEcCCCccccccccccccccccc-ccceeeccCCCCCCCccceeeeecCCCcEEEE
Q 016774          273 ILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLL-NMWKRLRAEGYKPNCRSFHRACPDYSGRYLYV  351 (383)
Q Consensus       273 ~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v  351 (383)
                       .+++||++||.++.....+.+++||++                  + ++|+.+.+   +|.+|..++++++  +++||+
T Consensus       462 -~~~~IYv~GG~~~~~~~~~~ve~Ydp~------------------~~~~W~~~~~---m~~~r~~~~~~~~--~~~iyv  517 (557)
T PHA02713        462 -HKDDIYVVCDIKDEKNVKTCIFRYNTN------------------TYNGWELITT---TESRLSALHTILH--DNTIMM  517 (557)
T ss_pred             -ECCEEEEEeCCCCCCccceeEEEecCC------------------CCCCeeEccc---cCcccccceeEEE--CCEEEE
Confidence             899999999987543334557889887                  6 69999865   9999999999999  899999


Q ss_pred             EcCccC
Q 016774          352 FGGMVD  357 (383)
Q Consensus       352 ~GG~~~  357 (383)
                      +||...
T Consensus       518 ~Gg~~~  523 (557)
T PHA02713        518 LHCYES  523 (557)
T ss_pred             Eeeecc
Confidence            999854

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.2e-33  Score=255.55  Aligned_cols=312  Identities=25%  Similarity=0.421  Sum_probs=245.6

Q ss_pred             ccccceeeeec-CCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEc--CCCCCCCCc
Q 016774           18 LESVSCRNISD-ADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKV--NSGIPSGRF   94 (383)
Q Consensus        18 ~~~~~W~~~~~-~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~~p~~r~   94 (383)
                      +....|+.+.. .++.   |.||-+|.++++..-|+||||.+++  ..+++.+|+...+     +|...  .++.|++..
T Consensus        14 ~~~~rWrrV~~~tGPv---PrpRHGHRAVaikELiviFGGGNEG--iiDELHvYNTatn-----qWf~PavrGDiPpgcA   83 (830)
T KOG4152|consen   14 KNVVRWRRVQQSTGPV---PRPRHGHRAVAIKELIVIFGGGNEG--IIDELHVYNTATN-----QWFAPAVRGDIPPGCA   83 (830)
T ss_pred             hcccceEEEecccCCC---CCccccchheeeeeeEEEecCCccc--chhhhhhhccccc-----eeecchhcCCCCCchh
Confidence            44567998854 4555   9999999999999999999998776  4578888888554     99853  577899999


Q ss_pred             ceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEcc----CCCCCCCccccceeEEECCcEEEEEccc
Q 016774           95 GHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLD----VGSIAPPARGAHAACCIDNRKMVIHAGI  170 (383)
Q Consensus        95 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~----~~~~~p~~r~~~~~~~~~~~~i~v~GG~  170 (383)
                      .|.++..+++||+|||..+-+++.||+|.+..+       .-.|+++.    ..+.+|.||-+|+....++ +.|+|||.
T Consensus        84 A~GfvcdGtrilvFGGMvEYGkYsNdLYELQas-------RWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGL  155 (830)
T KOG4152|consen   84 AFGFVCDGTRILVFGGMVEYGKYSNDLYELQAS-------RWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGL  155 (830)
T ss_pred             hcceEecCceEEEEccEeeeccccchHHHhhhh-------hhhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEeccc
Confidence            999999999999999999999999999988773       77788876    3467899999999999997 99999997


Q ss_pred             CCCC--------CcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEc-----CCEEEEEcccCCCCCccccEE
Q 016774          171 GLYG--------LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIG-----GNRTVLFGGRGVGYEVLNDVW  236 (383)
Q Consensus       171 ~~~~--------~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~-----~~~i~v~GG~~~~~~~~~~v~  236 (383)
                      ..+.        .+++|+|+++++-+..-+.|+..- .+..|.+|-.|+++.+.     ..+++|+||..  ...+.|+|
T Consensus       156 aNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~--G~RLgDLW  233 (830)
T KOG4152|consen  156 ANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS--GCRLGDLW  233 (830)
T ss_pred             cccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc--ccccccee
Confidence            4221        368999999998665667898776 77899999999999882     24599999983  45688999


Q ss_pred             EEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC-----CCC--------CCcEEEEEcCCCc
Q 016774          237 FLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA-----RRR--------KDDFWVLDTKAIP  303 (383)
Q Consensus       237 ~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~-----~~~--------~~~~~~~d~~~~~  303 (383)
                      .+|+++  .+|.+..     ..+..|.||.-|++.+ +++++|||||....     ...        .+.+-+++++   
T Consensus       234 ~Ldl~T--l~W~kp~-----~~G~~PlPRSLHsa~~-IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld---  302 (830)
T KOG4152|consen  234 TLDLDT--LTWNKPS-----LSGVAPLPRSLHSATT-IGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD---  302 (830)
T ss_pred             EEecce--eeccccc-----ccCCCCCCccccccee-ecceeEEecceeeeeccccccccccceeeeccceeeeeec---
Confidence            999999  9999996     6789999999999997 89999999997421     111        2334444544   


Q ss_pred             ccccccccccccccccccceeeccC----CCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEEEe
Q 016774          304 FTSVQQSMLDSRGLLLNMWKRLRAE----GYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVEL  379 (383)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~W~~~~~~----~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~  379 (383)
                                     +..|+.+...    ...|++|.+|.++++  +.++||..|..--  ..+-..+++- .|+|-||.
T Consensus       303 ---------------t~~W~tl~~d~~ed~tiPR~RAGHCAvAi--gtRlYiWSGRDGY--rKAwnnQVCC-kDlWyLdT  362 (830)
T KOG4152|consen  303 ---------------TMAWETLLMDTLEDNTIPRARAGHCAVAI--GTRLYIWSGRDGY--RKAWNNQVCC-KDLWYLDT  362 (830)
T ss_pred             ---------------chheeeeeeccccccccccccccceeEEe--ccEEEEEeccchh--hHhhccccch-hhhhhhcc
Confidence                           6778876432    347999999999999  8999999998421  1122223232 46777776


Q ss_pred             e
Q 016774          380 V  380 (383)
Q Consensus       380 ~  380 (383)
                      +
T Consensus       363 e  363 (830)
T KOG4152|consen  363 E  363 (830)
T ss_pred             c
Confidence            4

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=2.5e-32  Score=269.49  Aligned_cols=249  Identities=18%  Similarity=0.224  Sum_probs=203.8

Q ss_pred             cccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcce
Q 016774           17 QLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGH   96 (383)
Q Consensus        17 ~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~   96 (383)
                      +....+|..+...      | .+..++++++++.|||+||........++++.|++.++     +|.+++ .+|.+|..|
T Consensus       270 ~~~~~~~~~~~~~------~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-----~W~~~~-~~~~~R~~~  336 (534)
T PHA03098        270 YSPLSEINTIIDI------H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTK-----SWNKVP-ELIYPRKNP  336 (534)
T ss_pred             chhhhhcccccCc------c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCC-----eeeECC-CCCcccccc
Confidence            4444556655321      2 24556888899999999998666666789999999555     999887 478899999


Q ss_pred             eEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCc
Q 016774           97 TCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLR  176 (383)
Q Consensus        97 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~  176 (383)
                      +++.++++||++||... ....+++++||+       .+++|+.+++   +|.+|..|+++..++ +||++||....+..
T Consensus       337 ~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~-------~~~~W~~~~~---lp~~r~~~~~~~~~~-~iYv~GG~~~~~~~  404 (534)
T PHA03098        337 GVTVFNNRIYVIGGIYN-SISLNTVESWKP-------GESKWREEPP---LIFPRYNPCVVNVNN-LIYVIGGISKNDEL  404 (534)
T ss_pred             eEEEECCEEEEEeCCCC-CEecceEEEEcC-------CCCceeeCCC---cCcCCccceEEEECC-EEEEECCcCCCCcc
Confidence            99999999999999863 445788999999       6999998765   788999999988877 99999997655556


Q ss_pred             ccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCC--ccccEEEEEcccCccceEEecccc
Q 016774          177 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYE--VLNDVWFLDVYEGFFKWVQIPYEL  254 (383)
Q Consensus       177 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~--~~~~v~~~~~~~~~~~W~~i~~~~  254 (383)
                      ++++++||+.++    +|+.++  ++|.+|.+|+++.+ +++||++||......  .++.+++||+.+  ++|+.+    
T Consensus       405 ~~~v~~yd~~t~----~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~--~~W~~~----  471 (534)
T PHA03098        405 LKTVECFSLNTN----KWSKGS--PLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVT--NKWTEL----  471 (534)
T ss_pred             cceEEEEeCCCC----eeeecC--CCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCC--CceeeC----
Confidence            789999999999    999997  78889999999988 599999999853322  356799999999  999999    


Q ss_pred             cCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeecc
Q 016774          255 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRA  327 (383)
Q Consensus       255 ~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  327 (383)
                          ..+|.+|..+++++ .+++||++||.+... ..+++++||++                  +++|+.+..
T Consensus       472 ----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~-~~~~v~~yd~~------------------~~~W~~~~~  520 (534)
T PHA03098        472 ----SSLNFPRINASLCI-FNNKIYVVGGDKYEY-YINEIEVYDDK------------------TNTWTLFCK  520 (534)
T ss_pred             ----CCCCcccccceEEE-ECCEEEEEcCCcCCc-ccceeEEEeCC------------------CCEEEecCC
Confidence                46788899888886 799999999997643 36789999998                  788988754

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=100.00  E-value=9.9e-33  Score=243.99  Aligned_cols=247  Identities=23%  Similarity=0.444  Sum_probs=204.8

Q ss_pred             CCCCcccceeee--CCEEEEEccccCCC---CCCCceEEEEeccCcccccceEEcC-CCCCCCCcceeEEEEC-CEEEEE
Q 016774           36 PNPRASHSLNFV--SNCLVLFGGGCEGG---RHLDDTWVAYVGNDFQGMLKWQKVN-SGIPSGRFGHTCVVIG-DCLVLF  108 (383)
Q Consensus        36 p~~r~~~~~~~~--~~~i~v~GG~~~~~---~~~~~~~~~~~~~~~~~~~~W~~~~-~~~p~~r~~~~~~~~~-~~iyv~  108 (383)
                      |.||...++++.  .+-+++|||-....   ..++|+|.|+..++     +|+++. +..|+||++|.++++. +.+|||
T Consensus        64 PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~-----eWkk~~spn~P~pRsshq~va~~s~~l~~f  138 (521)
T KOG1230|consen   64 PSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKN-----EWKKVVSPNAPPPRSSHQAVAVPSNILWLF  138 (521)
T ss_pred             CCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEecccc-----ceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence            999999998876  56999999964432   35689999998665     999984 4578999999999997 779999


Q ss_pred             cCccC-C----CCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC---Ccccce
Q 016774          109 GGIND-R----GNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG---LRLGDT  180 (383)
Q Consensus       109 GG~~~-~----~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~---~~~~~~  180 (383)
                      ||... +    .....|+|+||+       .+.+|+++...+ .|.||++|.+++... ++++|||.-...   .++||+
T Consensus       139 GGEfaSPnq~qF~HYkD~W~fd~-------~trkweql~~~g-~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDv  209 (521)
T KOG1230|consen  139 GGEFASPNQEQFHHYKDLWLFDL-------KTRKWEQLEFGG-GPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDV  209 (521)
T ss_pred             ccccCCcchhhhhhhhheeeeee-------ccchheeeccCC-CCCCCccceeEEeee-eEEEEcceecCCCceEEeeee
Confidence            99752 1    224789999999       799999999877 999999999999888 999999974332   468999


Q ss_pred             EEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccC--------CCCCccccEEEEEccc---CccceE
Q 016774          181 WVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRG--------VGYEVLNDVWFLDVYE---GFFKWV  248 (383)
Q Consensus       181 ~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~--------~~~~~~~~v~~~~~~~---~~~~W~  248 (383)
                      |+||+++=    +|+++. .+..|.||++|++.+..++.|||.||..        ......+|+|.++++.   +.-.|.
T Consensus       210 y~FdLdty----kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~  285 (521)
T KOG1230|consen  210 YAFDLDTY----KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWT  285 (521)
T ss_pred             EEEeccce----eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEe
Confidence            99999996    999998 5557999999999998779999999982        2345678999999976   234689


Q ss_pred             EecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC--------CCCCCCcEEEEEcCCCccc
Q 016774          249 QIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFT  305 (383)
Q Consensus       249 ~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~--------~~~~~~~~~~~d~~~~~~~  305 (383)
                      ++.     ..+..|.||.++++++..+++.+.|||...        .+...+|+|.||++...|.
T Consensus       286 kvk-----p~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~  345 (521)
T KOG1230|consen  286 KVK-----PSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWS  345 (521)
T ss_pred             ecc-----CCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhh
Confidence            996     789999999999999888889999999743        2456899999999965554

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=2.6e-31  Score=245.66  Aligned_cols=232  Identities=18%  Similarity=0.251  Sum_probs=181.0

Q ss_pred             cceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccce----EEcCCCCCCCCcce
Q 016774           21 VSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKW----QKVNSGIPSGRFGH   96 (383)
Q Consensus        21 ~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W----~~~~~~~p~~r~~~   96 (383)
                      .+|..+...      |.||..+++++++++||++||.. .....+++++|++..+     +|    +.++ .+|.+|..|
T Consensus        51 ~~W~~~~~l------p~~r~~~~~~~~~~~lyviGG~~-~~~~~~~v~~~d~~~~-----~w~~~~~~~~-~lp~~~~~~  117 (323)
T TIGR03548        51 LKWVKDGQL------PYEAAYGASVSVENGIYYIGGSN-SSERFSSVYRITLDES-----KEELICETIG-NLPFTFENG  117 (323)
T ss_pred             eeEEEcccC------CccccceEEEEECCEEEEEcCCC-CCCCceeEEEEEEcCC-----ceeeeeeEcC-CCCcCccCc
Confidence            368887543      88998888899999999999964 3456789999998654     55    5655 478899999


Q ss_pred             eEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCC-CccccceeEEECCcEEEEEcccCCCCC
Q 016774           97 TCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAP-PARGAHAACCIDNRKMVIHAGIGLYGL  175 (383)
Q Consensus        97 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~~i~v~GG~~~~~~  175 (383)
                      ++++++++|||+||... ....+++++||+       .+++|++++.   +| .+|..|+++..++ +|||+||.+..  
T Consensus       118 ~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~-------~~~~W~~~~~---~p~~~r~~~~~~~~~~-~iYv~GG~~~~--  183 (323)
T TIGR03548       118 SACYKDGTLYVGGGNRN-GKPSNKSYLFNL-------ETQEWFELPD---FPGEPRVQPVCVKLQN-ELYVFGGGSNI--  183 (323)
T ss_pred             eEEEECCEEEEEeCcCC-CccCceEEEEcC-------CCCCeeECCC---CCCCCCCcceEEEECC-EEEEEcCCCCc--
Confidence            99999999999999743 445789999999       6999999865   44 4688888877777 99999997432  


Q ss_pred             cccceEEEeccCCcccCceEEcccC---CCCCCCCCceEEEEcCCEEEEEcccCCCC-----------------------
Q 016774          176 RLGDTWVLELSENFCFGSWQQLVTH---PSPPARSGHSLTRIGGNRTVLFGGRGVGY-----------------------  229 (383)
Q Consensus       176 ~~~~~~~~d~~~~~~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~i~v~GG~~~~~-----------------------  229 (383)
                      ...++++||++++    +|++++..   ..|.++..++++.+.+++||++||.+...                       
T Consensus       184 ~~~~~~~yd~~~~----~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (323)
T TIGR03548       184 AYTDGYKYSPKKN----QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEY  259 (323)
T ss_pred             cccceEEEecCCC----eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHH
Confidence            3567899999999    99999721   24555556666666579999999985211                       


Q ss_pred             --------CccccEEEEEcccCccceEEecccccCCCCCCC-CCceeeEEEEEcCCEEEEEcCcCCCCCCCCcE
Q 016774          230 --------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFS-LPRVGHSATLILGGRVLIYGGEDSARRRKDDF  294 (383)
Q Consensus       230 --------~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p-~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~  294 (383)
                              .+.+++++||+.+  ++|+.+.        .+| .+|.++++++ .+++||++||....+.+.+++
T Consensus       260 ~~~~~~~~~~~~~v~~yd~~~--~~W~~~~--------~~p~~~r~~~~~~~-~~~~iyv~GG~~~pg~rt~~~  322 (323)
T TIGR03548       260 FLKPPEWYNWNRKILIYNVRT--GKWKSIG--------NSPFFARCGAALLL-TGNNIFSINGELKPGVRTPDI  322 (323)
T ss_pred             hCCCccccCcCceEEEEECCC--CeeeEcc--------cccccccCchheEE-ECCEEEEEeccccCCcCCcCc
Confidence                    1236799999999  9999983        455 5888888876 899999999998776666554

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.4e-32  Score=247.22  Aligned_cols=291  Identities=25%  Similarity=0.444  Sum_probs=230.0

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCC------
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNS------   87 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~------   87 (383)
                      ++|+-.+++|..-...++.   |.+.+.|..+..+.+||+|||+.+-.+..+|+|.+..     .-+.|+++..      
T Consensus        60 HvYNTatnqWf~PavrGDi---PpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQa-----sRWeWkrlkp~~p~nG  131 (830)
T KOG4152|consen   60 HVYNTATNQWFAPAVRGDI---PPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQA-----SRWEWKRLKPKTPKNG  131 (830)
T ss_pred             hhhccccceeecchhcCCC---CCchhhcceEecCceEEEEccEeeeccccchHHHhhh-----hhhhHhhcCCCCCCCC
Confidence            5678889999988888887   9999999999999999999999999999999987766     4458988752      


Q ss_pred             CCCCCCcceeEEEECCEEEEEcCccCCC--------CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEE
Q 016774           88 GIPSGRFGHTCVVIGDCLVLFGGINDRG--------NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCI  159 (383)
Q Consensus        88 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~  159 (383)
                      .+|.+|.+|+..+++++.|+|||.....        +++||+|+++++.-   ..-.-|+.....+..|.||..|.++..
T Consensus       132 ~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~G---sgvv~W~ip~t~Gv~P~pRESHTAViY  208 (830)
T KOG4152|consen  132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPG---SGVVAWDIPITYGVLPPPRESHTAVIY  208 (830)
T ss_pred             CCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccC---CceEEEecccccCCCCCCcccceeEEE
Confidence            3577999999999999999999975321        25899999998411   235679998888999999999999886


Q ss_pred             C-----CcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccC-------
Q 016774          160 D-----NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRG-------  226 (383)
Q Consensus       160 ~-----~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~-------  226 (383)
                      .     ..++||+||+  .+.++.|+|.+|++|=    .|.+.+ .+-.|.+|..|+++.++ +++|||||.-       
T Consensus       209 ~eKDs~~skmvvyGGM--~G~RLgDLW~Ldl~Tl----~W~kp~~~G~~PlPRSLHsa~~IG-nKMyvfGGWVPl~~~~~  281 (830)
T KOG4152|consen  209 TEKDSKKSKMVVYGGM--SGCRLGDLWTLDLDTL----TWNKPSLSGVAPLPRSLHSATTIG-NKMYVFGGWVPLVMDDV  281 (830)
T ss_pred             EeccCCcceEEEEccc--ccccccceeEEeccee----ecccccccCCCCCCcccccceeec-ceeEEecceeeeecccc
Confidence            1     2379999996  5668999999999985    999998 77789999999999995 9999999981       


Q ss_pred             ------CCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCC------CCcE
Q 016774          227 ------VGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRR------KDDF  294 (383)
Q Consensus       227 ------~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~------~~~~  294 (383)
                            ....+.+.+-++|+++  ..|+.+-.++++... .|.+|.+||++. ++.++||..|.++....      ..|+
T Consensus       282 ~~~~hekEWkCTssl~clNldt--~~W~tl~~d~~ed~t-iPR~RAGHCAvA-igtRlYiWSGRDGYrKAwnnQVCCkDl  357 (830)
T KOG4152|consen  282 KVATHEKEWKCTSSLACLNLDT--MAWETLLMDTLEDNT-IPRARAGHCAVA-IGTRLYIWSGRDGYRKAWNNQVCCKDL  357 (830)
T ss_pred             ccccccceeeeccceeeeeecc--hheeeeeeccccccc-cccccccceeEE-eccEEEEEeccchhhHhhccccchhhh
Confidence                  1233567888999999  999998755554332 899999999997 89999999999876433      4789


Q ss_pred             EEEEcCCCcccccccccccccccccccceeec
Q 016774          295 WVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLR  326 (383)
Q Consensus       295 ~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~  326 (383)
                      |.+|++..+..+-.+.--...+..+-+|-.+.
T Consensus       358 WyLdTekPp~P~~VQL~rA~tNSlevsW~~V~  389 (830)
T KOG4152|consen  358 WYLDTEKPPPPARVQLVRANTNSLEVSWGAVA  389 (830)
T ss_pred             hhhcccCCCCCceEEEEecccceeEEechhhc
Confidence            99999865432111111222333455565553

>PHA03098 kelch-like protein; Provisional

Probab=99.98  E-value=1e-30  Score=257.95  Aligned_cols=224  Identities=18%  Similarity=0.249  Sum_probs=186.0

Q ss_pred             ccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEE
Q 016774           79 MLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACC  158 (383)
Q Consensus        79 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~  158 (383)
                      ..+|..+.. .| .+..|++++++++||++||........+++++||+       .+++|..++.   +|.+|..|+++.
T Consensus       273 ~~~~~~~~~-~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~-------~~~~W~~~~~---~~~~R~~~~~~~  340 (534)
T PHA03098        273 LSEINTIID-IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDT-------KTKSWNKVPE---LIYPRKNPGVTV  340 (534)
T ss_pred             hhhcccccC-cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeC-------CCCeeeECCC---CCcccccceEEE
Confidence            347777642 22 34557899999999999998765656789999999       6999998765   778999999998


Q ss_pred             ECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEE
Q 016774          159 IDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFL  238 (383)
Q Consensus       159 ~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~  238 (383)
                      .++ +||++||.. ....++++++||+.++    +|+.++  ++|.+|..|+++.+ +++||++||........+++++|
T Consensus       341 ~~~-~lyv~GG~~-~~~~~~~v~~yd~~~~----~W~~~~--~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~y  411 (534)
T PHA03098        341 FNN-RIYVIGGIY-NSISLNTVESWKPGES----KWREEP--PLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECF  411 (534)
T ss_pred             ECC-EEEEEeCCC-CCEecceEEEEcCCCC----ceeeCC--CcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEE
Confidence            877 999999986 3346789999999999    999988  78899999999988 59999999975555567899999


Q ss_pred             EcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCC--CCCcEEEEEcCCCcccccccccccccc
Q 016774          239 DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR--RKDDFWVLDTKAIPFTSVQQSMLDSRG  316 (383)
Q Consensus       239 ~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~  316 (383)
                      |+.+  ++|+.+        ..+|.+|.+|++++ .+++||++||.+....  ..+++++||++                
T Consensus       412 d~~t--~~W~~~--------~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~----------------  464 (534)
T PHA03098        412 SLNT--NKWSKG--------SPLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPV----------------  464 (534)
T ss_pred             eCCC--Ceeeec--------CCCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCC----------------
Confidence            9999  999998        46889999998886 8999999999865332  25669999988                


Q ss_pred             cccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774          317 LLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  357 (383)
Q Consensus       317 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~  357 (383)
                        +++|+.+..   +|.+|..++++..  +++|||+||...
T Consensus       465 --~~~W~~~~~---~~~~r~~~~~~~~--~~~iyv~GG~~~  498 (534)
T PHA03098        465 --TNKWTELSS---LNFPRINASLCIF--NNKIYVVGGDKY  498 (534)
T ss_pred             --CCceeeCCC---CCcccccceEEEE--CCEEEEEcCCcC
Confidence              789998865   7788998888877  789999999864

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.98  E-value=2.2e-30  Score=241.89  Aligned_cols=242  Identities=21%  Similarity=0.290  Sum_probs=183.7

Q ss_pred             ccccceeeeecCCCCCCCC-CCCcccceeeeCCEEEEEccccCCC-----CCCCceEEEEeccCcccccceEEcCCCCCC
Q 016774           18 LESVSCRNISDADGDLVLP-NPRASHSLNFVSNCLVLFGGGCEGG-----RHLDDTWVAYVGNDFQGMLKWQKVNSGIPS   91 (383)
Q Consensus        18 ~~~~~W~~~~~~~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~-----~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~   91 (383)
                      +...+|++++..      | .+|..+++++++++|||+||.....     ...+++++||+..+     +|++++..+|.
T Consensus        38 ~~~~~W~~l~~~------p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~-----~W~~~~~~~p~  106 (346)
T TIGR03547        38 KPSKGWQKIADF------PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN-----SWQKLDTRSPV  106 (346)
T ss_pred             CCCCCceECCCC------CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC-----EEecCCCCCCC
Confidence            356789998754      5 4899999999999999999974322     24678999999655     99998744567


Q ss_pred             CCcceeEE-EECCEEEEEcCccCCC---------------------------------CCccceeeeecccccCCccccc
Q 016774           92 GRFGHTCV-VIGDCLVLFGGINDRG---------------------------------NRHNDTWIGQIACHENLGITLS  137 (383)
Q Consensus        92 ~r~~~~~~-~~~~~iyv~GG~~~~~---------------------------------~~~~~~~~~d~~~~~~~~~~~~  137 (383)
                      +|.+|+++ +++++||++||.....                                 ...+++++||+       .+++
T Consensus       107 ~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp-------~t~~  179 (346)
T TIGR03547       107 GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDP-------STNQ  179 (346)
T ss_pred             cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEEC-------CCCc
Confidence            78888777 6899999999975310                                 01378999999       6999


Q ss_pred             EEEccCCCCCCC-ccccceeEEECCcEEEEEcccCCCCCcccceEEEec--cCCcccCceEEcccCCCCCCC-------C
Q 016774          138 WRLLDVGSIAPP-ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLEL--SENFCFGSWQQLVTHPSPPAR-------S  207 (383)
Q Consensus       138 W~~~~~~~~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~--~~~~~~~~W~~~~~~~~p~~r-------~  207 (383)
                      |+.+.+   +|. +|..|+++..++ +|||+||....+....+++.|++  +++    +|+.++  ++|.+|       .
T Consensus       180 W~~~~~---~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~----~W~~~~--~m~~~r~~~~~~~~  249 (346)
T TIGR03547       180 WRNLGE---NPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKL----EWNKLP--PLPPPKSSSQEGLA  249 (346)
T ss_pred             eeECcc---CCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCc----eeeecC--CCCCCCCCcccccc
Confidence            999865   554 677888777776 99999997544434456666654  666    999998  455443       4


Q ss_pred             CceEEEEcCCEEEEEcccCCCC----------------CccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEE
Q 016774          208 GHSLTRIGGNRTVLFGGRGVGY----------------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSAT  271 (383)
Q Consensus       208 ~~~~~~~~~~~i~v~GG~~~~~----------------~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~  271 (383)
                      +|+++.+ +++||++||.....                .....+.+||+++  ++|+.+        ..+|.+|..++++
T Consensus       250 ~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~--~~W~~~--------~~lp~~~~~~~~~  318 (346)
T TIGR03547       250 GAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN--GKWSKV--------GKLPQGLAYGVSV  318 (346)
T ss_pred             EEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC--Cccccc--------CCCCCCceeeEEE
Confidence            5656777 69999999984211                0123578999999  999998        5789999888766


Q ss_pred             EEcCCEEEEEcCcCCCCCCCCcEEEEEc
Q 016774          272 LILGGRVLIYGGEDSARRRKDDFWVLDT  299 (383)
Q Consensus       272 ~~~~~~l~i~GG~~~~~~~~~~~~~~d~  299 (383)
                      + .+++|||+||.+..+...++++.+-.
T Consensus       319 ~-~~~~iyv~GG~~~~~~~~~~v~~~~~  345 (346)
T TIGR03547       319 S-WNNGVLLIGGENSGGKAVTDVYLLSW  345 (346)
T ss_pred             E-cCCEEEEEeccCCCCCEeeeEEEEEe
Confidence            5 89999999999887778888887653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.97  E-value=6.1e-30  Score=240.81  Aligned_cols=242  Identities=21%  Similarity=0.260  Sum_probs=182.2

Q ss_pred             ccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccC-C----CCCCCceEEEEeccCcccccceEEcCCCCCCCCc
Q 016774           20 SVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCE-G----GRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRF   94 (383)
Q Consensus        20 ~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~-~----~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~   94 (383)
                      +.+|+++....     ..+|.++++++++++|||+||... .    ....+++|+||...+     +|++++...|.+|.
T Consensus        61 ~~~W~~l~~~p-----~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n-----~W~~~~~~~p~~~~  130 (376)
T PRK14131         61 SKGWTKIAAFP-----GGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN-----SWQKLDTRSPVGLA  130 (376)
T ss_pred             CCCeEECCcCC-----CCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC-----EEEeCCCCCCCccc
Confidence            57899886431     248999999999999999999754 1    134689999999655     99999754567778


Q ss_pred             ceeEEE-ECCEEEEEcCccCC---C------------------------------CCccceeeeecccccCCcccccEEE
Q 016774           95 GHTCVV-IGDCLVLFGGINDR---G------------------------------NRHNDTWIGQIACHENLGITLSWRL  140 (383)
Q Consensus        95 ~~~~~~-~~~~iyv~GG~~~~---~------------------------------~~~~~~~~~d~~~~~~~~~~~~W~~  140 (383)
                      +|++++ .+++||++||....   .                              ...+++++||+       .+++|+.
T Consensus       131 ~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~-------~t~~W~~  203 (376)
T PRK14131        131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDP-------STNQWKN  203 (376)
T ss_pred             ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEEC-------CCCeeeE
Confidence            888877 79999999997531   0                              12478999999       6999999


Q ss_pred             ccCCCCCCC-ccccceeEEECCcEEEEEcccCCCCCcccceEE--EeccCCcccCceEEcccCCCCCCCC--------Cc
Q 016774          141 LDVGSIAPP-ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWV--LELSENFCFGSWQQLVTHPSPPARS--------GH  209 (383)
Q Consensus       141 ~~~~~~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~--~d~~~~~~~~~W~~~~~~~~p~~r~--------~~  209 (383)
                      +.+   +|. +|..|+++..++ +|||+||....+....++|.  ||++++    +|+.++  ++|.+|.        ++
T Consensus       204 ~~~---~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~----~W~~~~--~~p~~~~~~~~~~~~~~  273 (376)
T PRK14131        204 AGE---SPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNL----KWQKLP--DLPPAPGGSSQEGVAGA  273 (376)
T ss_pred             CCc---CCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCc----ceeecC--CCCCCCcCCcCCccceE
Confidence            765   554 677777777776 99999997544444556654  456777    999998  5555553        22


Q ss_pred             eEEEEcCCEEEEEcccCCCCC----------------ccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEE
Q 016774          210 SLTRIGGNRTVLFGGRGVGYE----------------VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI  273 (383)
Q Consensus       210 ~~~~~~~~~i~v~GG~~~~~~----------------~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~  273 (383)
                      .++++ +++|||+||......                ....+.+||+++  ++|+.+        ..+|.+|..+++++ 
T Consensus       274 ~a~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~--~~W~~~--------~~lp~~r~~~~av~-  341 (376)
T PRK14131        274 FAGYS-NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN--GKWQKV--------GELPQGLAYGVSVS-  341 (376)
T ss_pred             eceeE-CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC--Cccccc--------CcCCCCccceEEEE-
Confidence            24556 599999999742210                012467899999  999988        57899999887665 


Q ss_pred             cCCEEEEEcCcCCCCCCCCcEEEEEcC
Q 016774          274 LGGRVLIYGGEDSARRRKDDFWVLDTK  300 (383)
Q Consensus       274 ~~~~l~i~GG~~~~~~~~~~~~~~d~~  300 (383)
                      .+++|||+||........++++.|+.+
T Consensus       342 ~~~~iyv~GG~~~~~~~~~~v~~~~~~  368 (376)
T PRK14131        342 WNNGVLLIGGETAGGKAVSDVTLLSWD  368 (376)
T ss_pred             eCCEEEEEcCCCCCCcEeeeEEEEEEc
Confidence            899999999987766778999999987

>PHA02790 Kelch-like protein; Provisional

Probab=99.96  E-value=5.2e-28  Score=234.08  Aligned_cols=203  Identities=17%  Similarity=0.186  Sum_probs=171.8

Q ss_pred             eeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeee
Q 016774           45 NFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIG  124 (383)
Q Consensus        45 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  124 (383)
                      +..++.||++||... ....+.++.|++..+     +|..+++ +|.+|..++++.++++||++||...    .+.+++|
T Consensus       268 ~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~-----~W~~~~~-m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~y  336 (480)
T PHA02790        268 THVGEVVYLIGGWMN-NEIHNNAIAVNYISN-----NWIPIPP-MNSPRLYASGVPANNKLYVVGGLPN----PTSVERW  336 (480)
T ss_pred             EEECCEEEEEcCCCC-CCcCCeEEEEECCCC-----EEEECCC-CCchhhcceEEEECCEEEEECCcCC----CCceEEE
Confidence            448999999999643 345678999999555     9999974 7889999999999999999999753    2568999


Q ss_pred             ecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCC
Q 016774          125 QIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPP  204 (383)
Q Consensus       125 d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~  204 (383)
                      |+       .+++|..+++   +|.+|..|+++..++ +||++||....   .+.+.+||+.++    +|+.++  ++|.
T Consensus       337 dp-------~~n~W~~~~~---l~~~r~~~~~~~~~g-~IYviGG~~~~---~~~ve~ydp~~~----~W~~~~--~m~~  396 (480)
T PHA02790        337 FH-------GDAAWVNMPS---LLKPRCNPAVASINN-VIYVIGGHSET---DTTTEYLLPNHD----QWQFGP--STYY  396 (480)
T ss_pred             EC-------CCCeEEECCC---CCCCCcccEEEEECC-EEEEecCcCCC---CccEEEEeCCCC----EEEeCC--CCCC
Confidence            98       5899999876   788999999988887 99999997422   367899999999    999998  7888


Q ss_pred             CCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCc
Q 016774          205 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGE  284 (383)
Q Consensus       205 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~  284 (383)
                      +|..|+++++ +++||++||.         +.+||+++  ++|+.+        .++|.+|.++++++ .+++||++||.
T Consensus       397 ~r~~~~~~~~-~~~IYv~GG~---------~e~ydp~~--~~W~~~--------~~m~~~r~~~~~~v-~~~~IYviGG~  455 (480)
T PHA02790        397 PHYKSCALVF-GRRLFLVGRN---------AEFYCESS--NTWTLI--------DDPIYPRDNPELII-VDNKLLLIGGF  455 (480)
T ss_pred             ccccceEEEE-CCEEEEECCc---------eEEecCCC--CcEeEc--------CCCCCCccccEEEE-ECCEEEEECCc
Confidence            9999999988 5999999984         56799999  999999        57889999998887 89999999998


Q ss_pred             CCCCCCCCcEEEEEcC
Q 016774          285 DSARRRKDDFWVLDTK  300 (383)
Q Consensus       285 ~~~~~~~~~~~~~d~~  300 (383)
                      +... ..+.+++||++
T Consensus       456 ~~~~-~~~~ve~Yd~~  470 (480)
T PHA02790        456 YRGS-YIDTIEVYNNR  470 (480)
T ss_pred             CCCc-ccceEEEEECC
Confidence            7533 35779999998

>PHA02790 Kelch-like protein; Provisional

Probab=99.95  E-value=3.7e-26  Score=221.14  Aligned_cols=190  Identities=16%  Similarity=0.211  Sum_probs=161.6

Q ss_pred             EEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcc
Q 016774           98 CVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRL  177 (383)
Q Consensus        98 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~  177 (383)
                      .+..++.||++||... ....+.+++||+       .+++|..+++   +|.+|..++++..++ +||++||.+.    .
T Consensus       267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp-------~~~~W~~~~~---m~~~r~~~~~v~~~~-~iYviGG~~~----~  330 (480)
T PHA02790        267 STHVGEVVYLIGGWMN-NEIHNNAIAVNY-------ISNNWIPIPP---MNSPRLYASGVPANN-KLYVVGGLPN----P  330 (480)
T ss_pred             eEEECCEEEEEcCCCC-CCcCCeEEEEEC-------CCCEEEECCC---CCchhhcceEEEECC-EEEEECCcCC----C
Confidence            3458999999999854 345678999999       5899999876   778999999888877 9999999742    2


Q ss_pred             cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCC
Q 016774          178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI  257 (383)
Q Consensus       178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~  257 (383)
                      +.+++||+.++    +|+.++  ++|.+|..|+++.+ +++||++||....   .+.+.+||+.+  ++|+.+       
T Consensus       331 ~sve~ydp~~n----~W~~~~--~l~~~r~~~~~~~~-~g~IYviGG~~~~---~~~ve~ydp~~--~~W~~~-------  391 (480)
T PHA02790        331 TSVERWFHGDA----AWVNMP--SLLKPRCNPAVASI-NNVIYVIGGHSET---DTTTEYLLPNH--DQWQFG-------  391 (480)
T ss_pred             CceEEEECCCC----eEEECC--CCCCCCcccEEEEE-CCEEEEecCcCCC---CccEEEEeCCC--CEEEeC-------
Confidence            56899999998    999998  88999999999998 6999999998532   35789999999  999998       


Q ss_pred             CCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccc
Q 016774          258 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSF  337 (383)
Q Consensus       258 ~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~  337 (383)
                       ..+|.+|.+|++++ .+++||++||.         +.+||++                  +++|+.+.+   +|.+|..
T Consensus       392 -~~m~~~r~~~~~~~-~~~~IYv~GG~---------~e~ydp~------------------~~~W~~~~~---m~~~r~~  439 (480)
T PHA02790        392 -PSTYYPHYKSCALV-FGRRLFLVGRN---------AEFYCES------------------SNTWTLIDD---PIYPRDN  439 (480)
T ss_pred             -CCCCCccccceEEE-ECCEEEEECCc---------eEEecCC------------------CCcEeEcCC---CCCCccc
Confidence             57889999998886 89999999984         4578876                  789998865   8899999


Q ss_pred             eeeeecCCCcEEEEEcCcc
Q 016774          338 HRACPDYSGRYLYVFGGMV  356 (383)
Q Consensus       338 ~~~~~~~~~~~l~v~GG~~  356 (383)
                      ++++++  +++||++||..
T Consensus       440 ~~~~v~--~~~IYviGG~~  456 (480)
T PHA02790        440 PELIIV--DNKLLLIGGFY  456 (480)
T ss_pred             cEEEEE--CCEEEEECCcC
Confidence            999888  88999999985

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.85  E-value=1.8e-19  Score=158.21  Aligned_cols=285  Identities=19%  Similarity=0.233  Sum_probs=203.6

Q ss_pred             CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCC
Q 016774           36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRG  115 (383)
Q Consensus        36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  115 (383)
                      |.+-...+...+++.+||-=|.     .-...+.+|+..   ....|+++..-+-.+|.+..+++++++||+|||.....
T Consensus        34 Pvg~KnG~Ga~ig~~~YVGLGs-----~G~afy~ldL~~---~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~  105 (381)
T COG3055          34 PVGFKNGAGALIGDTVYVGLGS-----AGTAFYVLDLKK---PGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSV  105 (381)
T ss_pred             CccccccccceecceEEEEecc-----CCccceehhhhc---CCCCceEcccCCCcccccchheeeCCeEEEeeccccCC
Confidence            8888888888899999987662     123456666644   33499999877788999999999999999999975322


Q ss_pred             ----CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC-----------------
Q 016774          116 ----NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG-----------------  174 (383)
Q Consensus       116 ----~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~-----------------  174 (383)
                          +.++++|+||+       .+++|+++.+.  .|....+|.++...+.+++++||.+..-                 
T Consensus       106 ~~~~~~~nd~Y~y~p-------~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~  176 (381)
T COG3055         106 SSSPQVFNDAYRYDP-------STNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEA  176 (381)
T ss_pred             CCCceEeeeeEEecC-------CCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHH
Confidence                34899999999       59999999765  5777888888888888999999985220                 


Q ss_pred             ----------------CcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEE
Q 016774          175 ----------------LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFL  238 (383)
Q Consensus       175 ----------------~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~  238 (383)
                                      ....+++.|++.++    +|+.+-. ....++++ ++++..++++.++-|...+......++++
T Consensus       177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n----~W~~~G~-~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~  250 (381)
T COG3055         177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTN----QWRNLGE-NPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQA  250 (381)
T ss_pred             HHHHHHHHhCCCHHHhcccccccccccccc----hhhhcCc-CcccCccC-cceeecCCeEEEEcceecCCccccceeEE
Confidence                            12457899999999    9998862 22345566 45556578899999986666667778888


Q ss_pred             EcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC------------------CCCCCcEEEEEcC
Q 016774          239 DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA------------------RRRKDDFWVLDTK  300 (383)
Q Consensus       239 ~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~------------------~~~~~~~~~~d~~  300 (383)
                      +...+..+|..+......... -+....++=.- ..++.+++.||-+-.                  ..-.++||++|  
T Consensus       251 ~~~~~~~~w~~l~~lp~~~~~-~~eGvAGaf~G-~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--  326 (381)
T COG3055         251 DFGGDNLKWLKLSDLPAPIGS-NKEGVAGAFSG-KSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--  326 (381)
T ss_pred             EeccCceeeeeccCCCCCCCC-Cccccceeccc-eeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--
Confidence            888766899998522221111 12333333222 267889999986521                  11247899999  


Q ss_pred             CCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccc
Q 016774          301 AIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRF  370 (383)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  370 (383)
                                        ++.|+.+   +.+|.++.+-.+  +..++.||++||...+.......+.+..
T Consensus       327 ------------------~g~Wk~~---GeLp~~l~YG~s--~~~nn~vl~IGGE~~~Gka~~~v~~l~~  373 (381)
T COG3055         327 ------------------NGSWKIV---GELPQGLAYGVS--LSYNNKVLLIGGETSGGKATTRVYSLSW  373 (381)
T ss_pred             ------------------CCceeee---cccCCCccceEE--EecCCcEEEEccccCCCeeeeeEEEEEE
Confidence                              5799988   558887664333  3347899999999887765555544443

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.79  E-value=1.4e-17  Score=146.41  Aligned_cols=254  Identities=18%  Similarity=0.291  Sum_probs=185.5

Q ss_pred             hhhhhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCC----CCCCCceEEEEeccCcccccceEEcC
Q 016774           11 LYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEG----GRHLDDTWVAYVGNDFQGMLKWQKVN   86 (383)
Q Consensus        11 ~~~~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~----~~~~~~~~~~~~~~~~~~~~~W~~~~   86 (383)
                      ||+.-++.....|+++..-.     -.+|.+..++.++++||||||.-..    .+..+|+|.|+...+     +|.++.
T Consensus        60 fy~ldL~~~~k~W~~~a~Fp-----G~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n-----sW~kl~  129 (381)
T COG3055          60 FYVLDLKKPGKGWTKIADFP-----GGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN-----SWHKLD  129 (381)
T ss_pred             ceehhhhcCCCCceEcccCC-----CcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC-----hhheec
Confidence            44444555667899886443     2389999999999999999996432    345688999998665     999998


Q ss_pred             CCCCCCCcceeEEEECC-EEEEEcCccCC---------------------------------CCCccceeeeecccccCC
Q 016774           87 SGIPSGRFGHTCVVIGD-CLVLFGGINDR---------------------------------GNRHNDTWIGQIACHENL  132 (383)
Q Consensus        87 ~~~p~~r~~~~~~~~~~-~iyv~GG~~~~---------------------------------~~~~~~~~~~d~~~~~~~  132 (383)
                      ...|....+++++.+++ +||++||.+..                                 -....+++.|++      
T Consensus       130 t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p------  203 (381)
T COG3055         130 TRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDP------  203 (381)
T ss_pred             cccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccccc------
Confidence            88899999999999998 79999997521                                 001233556666      


Q ss_pred             cccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCC-----CCCC
Q 016774          133 GITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSP-----PARS  207 (383)
Q Consensus       133 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p-----~~r~  207 (383)
                       .++.|+.+-..  +-.++++ +++...++++.++-|.-..+.+...++++++..+  ..+|..+...+.|     ...+
T Consensus       204 -~~n~W~~~G~~--pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~--~~~w~~l~~lp~~~~~~~eGvA  277 (381)
T COG3055         204 -STNQWRNLGEN--PFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD--NLKWLKLSDLPAPIGSNKEGVA  277 (381)
T ss_pred             -ccchhhhcCcC--cccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccC--ceeeeeccCCCCCCCCCccccc
Confidence             69999976432  2234555 4445555589999998777778888999998744  4689999721211     3344


Q ss_pred             CceEEEEcCCEEEEEcccC------------------CCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeE
Q 016774          208 GHSLTRIGGNRTVLFGGRG------------------VGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHS  269 (383)
Q Consensus       208 ~~~~~~~~~~~i~v~GG~~------------------~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~  269 (383)
                      ++-.-.. ++.+++.||..                  ....+.++||.||  .  ..|+.+        +.+|.++....
T Consensus       278 Gaf~G~s-~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~--g~Wk~~--------GeLp~~l~YG~  344 (381)
T COG3055         278 GAFSGKS-NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--N--GSWKIV--------GELPQGLAYGV  344 (381)
T ss_pred             eecccee-CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--C--Cceeee--------cccCCCccceE
Confidence            5555555 58899999982                  1233567899998  5  889999        89999887766


Q ss_pred             EEEEcCCEEEEEcCcCCCCCCCCcEEEEEcC
Q 016774          270 ATLILGGRVLIYGGEDSARRRKDDFWVLDTK  300 (383)
Q Consensus       270 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~  300 (383)
                      ++. .++.+|++||.+..+.+..+|+.+-..
T Consensus       345 s~~-~nn~vl~IGGE~~~Gka~~~v~~l~~~  374 (381)
T COG3055         345 SLS-YNNKVLLIGGETSGGKATTRVYSLSWD  374 (381)
T ss_pred             EEe-cCCcEEEEccccCCCeeeeeEEEEEEc
Confidence            665 899999999999988888888877654

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.72  E-value=7.6e-19  Score=159.70  Aligned_cols=333  Identities=19%  Similarity=0.251  Sum_probs=211.2

Q ss_pred             ccceeeeecCC----CCCCCCCCCcccceeeeCC--EEEEEccccCCCCCCCceEEEEeccCcccccceEEcC--CCCCC
Q 016774           20 SVSCRNISDAD----GDLVLPNPRASHSLNFVSN--CLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVN--SGIPS   91 (383)
Q Consensus        20 ~~~W~~~~~~~----~~~~~p~~r~~~~~~~~~~--~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~p~   91 (383)
                      ...|.++....    ..+..|..|.+|.++...+  ++|++||.+ +-+.+.|.|.|....+     .|+.++  +..|.
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~l~DFW~Y~v~e~-----~W~~iN~~t~~PG  311 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQDLADFWAYSVKEN-----QWTCINRDTEGPG  311 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cchhHHHHHhhcCCcc-----eeEEeecCCCCCc
Confidence            34688776554    1122399999999998754  999999964 4467899999999665     999875  45789


Q ss_pred             CCcceeEEEECC--EEEEEcCccCCC-----CCccceeeeecccccCCcccccEEEccCCC---CCCCccccceeEEECC
Q 016774           92 GRFGHTCVVIGD--CLVLFGGINDRG-----NRHNDTWIGQIACHENLGITLSWRLLDVGS---IAPPARGAHAACCIDN  161 (383)
Q Consensus        92 ~r~~~~~~~~~~--~iyv~GG~~~~~-----~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~---~~p~~r~~~~~~~~~~  161 (383)
                      .|..|.|+..-.  ++|+.|-+-...     ..-.|+|.||+       .++.|..+....   ..|...+.|.+++.++
T Consensus       312 ~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi-------~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~  384 (723)
T KOG2437|consen  312 ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDI-------DTNTWMLLSEDTAADGGPKLVFDHQMCVDSE  384 (723)
T ss_pred             chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEec-------CCceeEEecccccccCCcceeecceeeEecC
Confidence            999999999866  699999754221     12578999999       499999887332   3788999999999877


Q ss_pred             -cEEEEEcccCCCC--CcccceEEEeccCCcccCceEEccc---C-----CCCCCCCCceEEEEc-CCEEEEEcccCCCC
Q 016774          162 -RKMVIHAGIGLYG--LRLGDTWVLELSENFCFGSWQQLVT---H-----PSPPARSGHSLTRIG-GNRTVLFGGRGVGY  229 (383)
Q Consensus       162 -~~i~v~GG~~~~~--~~~~~~~~~d~~~~~~~~~W~~~~~---~-----~~p~~r~~~~~~~~~-~~~i~v~GG~~~~~  229 (383)
                       +.+||+||+....  .....+|.||+...    .|.++..   .     .....|.+|++-... ++.+|++||... .
T Consensus       385 k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~----~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s-~  459 (723)
T KOG2437|consen  385 KHMIYVFGGRILTCNEPQFSGLYAFNCQCQ----TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS-K  459 (723)
T ss_pred             cceEEEecCeeccCCCccccceEEEecCCc----cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc-c
Confidence             2499999975332  45778999999998    9998871   0     123468888877664 356889998853 3


Q ss_pred             CccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEE-EcCCEEEEEcCcCCC-----CCCCCcEEEEEcCCCc
Q 016774          230 EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL-ILGGRVLIYGGEDSA-----RRRKDDFWVLDTKAIP  303 (383)
Q Consensus       230 ~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~-~~~~~l~i~GG~~~~-----~~~~~~~~~~d~~~~~  303 (383)
                      .-++-.+.|++..  .+=..++--........|++-...-+.. -....|...-|+...     ....+.+|+|++.+..
T Consensus       460 ~El~L~f~y~I~~--E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~  537 (723)
T KOG2437|consen  460 TELNLFFSYDIDS--EHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNS  537 (723)
T ss_pred             eEEeehhcceecc--ccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccc
Confidence            3344455666554  2222221000111111222211111111 134567777777543     2246789999998655


Q ss_pred             ccccccccccccccccccceeecc-----CCCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEEE
Q 016774          304 FTSVQQSMLDSRGLLLNMWKRLRA-----EGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVE  378 (383)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~  378 (383)
                      |.-+..-.....|..  .-..+.-     .-..|.+|.+|+.+++....-.|.+||...     -+.+..-..+|-|.++
T Consensus       538 w~cI~~I~~~~~d~d--tvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~-----~~~~~~m~l~dfW~l~  610 (723)
T KOG2437|consen  538 WSCIYKIDQAAKDND--TVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPG-----KSCSPKMRLDDFWSLK  610 (723)
T ss_pred             hhhHhhhHHhhccCC--ceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCC-----CCCCchhhhhhHHHHh
Confidence            543332221111111  1112110     123578999998888776778999999943     2223333345666655


Q ss_pred             e
Q 016774          379 L  379 (383)
Q Consensus       379 ~  379 (383)
                      |
T Consensus       611 I  611 (723)
T KOG2437|consen  611 I  611 (723)
T ss_pred             h
Confidence            4

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.67  E-value=6.8e-17  Score=147.13  Aligned_cols=195  Identities=19%  Similarity=0.342  Sum_probs=149.3

Q ss_pred             cccceEEcCC---------CCCCCCcceeEEEECC--EEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCC
Q 016774           78 GMLKWQKVNS---------GIPSGRFGHTCVVIGD--CLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSI  146 (383)
Q Consensus        78 ~~~~W~~~~~---------~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~  146 (383)
                      ....|.+++.         ..|..|.+|.|+...+  .||++||+++ -+.+.|.|.|..       ..+.|..+...+.
T Consensus       237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG-~~~l~DFW~Y~v-------~e~~W~~iN~~t~  308 (723)
T KOG2437|consen  237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG-TQDLADFWAYSV-------KENQWTCINRDTE  308 (723)
T ss_pred             ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc-chhHHHHHhhcC-------CcceeEEeecCCC
Confidence            4448887642         3588999999999865  6999999965 456889999999       5889999988888


Q ss_pred             CCCccccceeEEE-CCcEEEEEcccCCCC-----CcccceEEEeccCCcccCceEEcc----cCCCCCCCCCceEEEEcC
Q 016774          147 APPARGAHAACCI-DNRKMVIHAGIGLYG-----LRLGDTWVLELSENFCFGSWQQLV----THPSPPARSGHSLTRIGG  216 (383)
Q Consensus       147 ~p~~r~~~~~~~~-~~~~i~v~GG~~~~~-----~~~~~~~~~d~~~~~~~~~W~~~~----~~~~p~~r~~~~~~~~~~  216 (383)
                      .|..|.+|.++.. ...++|+.|-+-...     ...+|+|+||.+++    .|..+.    ....|...+.|.+++.+ 
T Consensus       309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~----~W~~ls~dt~~dGGP~~vfDHqM~Vd~-  383 (723)
T KOG2437|consen  309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN----TWMLLSEDTAADGGPKLVFDHQMCVDS-  383 (723)
T ss_pred             CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc----eeEEecccccccCCcceeecceeeEec-
Confidence            9999999999885 335899998753221     23579999999999    999998    23578899999999995 


Q ss_pred             CE--EEEEcccCC--CCCccccEEEEEcccCccceEEeccccc--CCCCCCCCCceeeEEEEE-cCCEEEEEcCcCCC
Q 016774          217 NR--TVLFGGRGV--GYEVLNDVWFLDVYEGFFKWVQIPYELQ--NIPAGFSLPRVGHSATLI-LGGRVLIYGGEDSA  287 (383)
Q Consensus       217 ~~--i~v~GG~~~--~~~~~~~v~~~~~~~~~~~W~~i~~~~~--~~~~~~p~~r~~~~~~~~-~~~~l~i~GG~~~~  287 (383)
                      ++  +||+||+..  ....+..+|.|+...  ..|..+.....  ..-......|.+|++-.. .+..+|++||....
T Consensus       384 ~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~--~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~  459 (723)
T KOG2437|consen  384 EKHMIYVFGGRILTCNEPQFSGLYAFNCQC--QTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK  459 (723)
T ss_pred             CcceEEEecCeeccCCCccccceEEEecCC--ccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence            55  999999932  334677899999999  99987752111  111223456788888765 56789999998654

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=99.20  E-value=4.8e-09  Score=90.08  Aligned_cols=189  Identities=14%  Similarity=0.123  Sum_probs=121.2

Q ss_pred             CCCCCcceeEEEE-C------CEEEEEcCccCCCCCccceeeeeccccc-CCcccccEEEccCCCCCCCccccceeEEE-
Q 016774           89 IPSGRFGHTCVVI-G------DCLVLFGGINDRGNRHNDTWIGQIACHE-NLGITLSWRLLDVGSIAPPARGAHAACCI-  159 (383)
Q Consensus        89 ~p~~r~~~~~~~~-~------~~iyv~GG~~~~~~~~~~~~~~d~~~~~-~~~~~~~W~~~~~~~~~p~~r~~~~~~~~-  159 (383)
                      +|+.|.- +++.+ +      ...+|.||++.+....+.+|++.+.... +...+....+....++.|.+|++|++.++ 
T Consensus        19 LPPLR~P-Av~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~   97 (337)
T PF03089_consen   19 LPPLRCP-AVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVH   97 (337)
T ss_pred             CCCCCCc-cEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEE
Confidence            4666654 44444 1      1277889998888888899998886554 45557777888888999999999998876 


Q ss_pred             --CCcEEEEEcccCCCC--C-----------cccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcc
Q 016774          160 --DNRKMVIHAGIGLYG--L-----------RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGG  224 (383)
Q Consensus       160 --~~~~i~v~GG~~~~~--~-----------~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG  224 (383)
                        ++...++|||+..-.  +           ....++.+|++.+    -++.-....+-.....|-+.+- ++.+|++||
T Consensus        98 SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG----C~tah~lpEl~dG~SFHvslar-~D~VYilGG  172 (337)
T PF03089_consen   98 SRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG----CCTAHTLPELQDGQSFHVSLAR-NDCVYILGG  172 (337)
T ss_pred             ECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc----ccccccchhhcCCeEEEEEEec-CceEEEEcc
Confidence              344689999975221  1           1235788998876    5554433355566777877776 699999999


Q ss_pred             cCCCCC-ccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEE--cCCEEEEEcCcCCCCCC
Q 016774          225 RGVGYE-VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI--LGGRVLIYGGEDSARRR  290 (383)
Q Consensus       225 ~~~~~~-~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~--~~~~l~i~GG~~~~~~~  290 (383)
                      +..... ....++++.++-  -.=+..     -....++....-.++++.  .....+|+||+..+.+.
T Consensus       173 Hsl~sd~Rpp~l~rlkVdL--llGSP~-----vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQK  234 (337)
T PF03089_consen  173 HSLESDSRPPRLYRLKVDL--LLGSPA-----VSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQK  234 (337)
T ss_pred             EEccCCCCCCcEEEEEEee--cCCCce-----eEEEECCCCceEeeeeEeecCCCceEEEeccccccee
Confidence            943322 233567766543  100000     011223444444444443  45779999999765443

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=99.17  E-value=3.5e-09  Score=90.92  Aligned_cols=142  Identities=20%  Similarity=0.270  Sum_probs=101.7

Q ss_pred             ccccceeEEECC------cEEEEEcccCCCCCcccceEEEeccCCcc----cCceEEcc-cCCCCCCCCCceEEEE---c
Q 016774          150 ARGAHAACCIDN------RKMVIHAGIGLYGLRLGDTWVLELSENFC----FGSWQQLV-THPSPPARSGHSLTRI---G  215 (383)
Q Consensus       150 ~r~~~~~~~~~~------~~i~v~GG~~~~~~~~~~~~~~d~~~~~~----~~~W~~~~-~~~~p~~r~~~~~~~~---~  215 (383)
                      |..+.|.+.+.+      ...++.||+.+++..++.+|++..+++..    ++.+++.. .+..|.+|++|++.++   +
T Consensus        21 PLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrG  100 (337)
T PF03089_consen   21 PLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRG  100 (337)
T ss_pred             CCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECC
Confidence            334555555521      35778899999988899999999887642    33344444 7889999999998877   3


Q ss_pred             CCEEEEEcccCC-------------CCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEc
Q 016774          216 GNRTVLFGGRGV-------------GYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYG  282 (383)
Q Consensus       216 ~~~i~v~GG~~~-------------~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~G  282 (383)
                      +...++|||+.-             --.....|+.+|++-  ...+.-      ....+..+...|.+.+ -++.+|++|
T Consensus       101 Kta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleF--GC~tah------~lpEl~dG~SFHvsla-r~D~VYilG  171 (337)
T PF03089_consen  101 KTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEF--GCCTAH------TLPELQDGQSFHVSLA-RNDCVYILG  171 (337)
T ss_pred             cEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccc--cccccc------cchhhcCCeEEEEEEe-cCceEEEEc
Confidence            345899999821             111345789999998  777665      2356677788898886 899999999


Q ss_pred             CcCCC-CCCCCcEEEEEcC
Q 016774          283 GEDSA-RRRKDDFWVLDTK  300 (383)
Q Consensus       283 G~~~~-~~~~~~~~~~d~~  300 (383)
                      |..-. +.+...++.+..+
T Consensus       172 GHsl~sd~Rpp~l~rlkVd  190 (337)
T PF03089_consen  172 GHSLESDSRPPRLYRLKVD  190 (337)
T ss_pred             cEEccCCCCCCcEEEEEEe
Confidence            98754 3456678887765

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF13964 Kelch_6: Kelch motif

Probab=99.10  E-value=2.4e-10  Score=74.43  Aligned_cols=50  Identities=34%  Similarity=0.601  Sum_probs=44.5

Q ss_pred             CCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCcc
Q 016774           92 GRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPAR  151 (383)
Q Consensus        92 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r  151 (383)
                      +|.+|++++++++|||+||........+++++||+       ++++|+++.+   +|.||
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~-------~t~~W~~~~~---mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDP-------ETNTWEQLPP---MPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcC-------CCCcEEECCC---CCCCC
Confidence            68999999999999999998776677999999999       7999999875   67776

>PLN02772 guanylate kinase

Probab=99.05  E-value=1e-09  Score=100.92  Aligned_cols=89  Identities=19%  Similarity=0.225  Sum_probs=78.8

Q ss_pred             CCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcc
Q 016774           90 PSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAG  169 (383)
Q Consensus        90 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG  169 (383)
                      ..++..|+++.+++++||+||.++.+...+.+++||.       .+.+|......|..|.||.+|+++.+++++|+|+++
T Consensus        22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~-------~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~   94 (398)
T PLN02772         22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDK-------ITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKK   94 (398)
T ss_pred             CCCCCcceeEEECCEEEEEcccCCCccccceEEEEEC-------CCCcEecccccCCCCCCCCcceEEEECCceEEEEeC
Confidence            4488999999999999999999886657899999999       699999999999999999999999998889999998


Q ss_pred             cCCCCCcccceEEEeccCC
Q 016774          170 IGLYGLRLGDTWVLELSEN  188 (383)
Q Consensus       170 ~~~~~~~~~~~~~~d~~~~  188 (383)
                      ....+   +++|.+.++|.
T Consensus        95 ~~~~~---~~~w~l~~~t~  110 (398)
T PLN02772         95 GSAPD---DSIWFLEVDTP  110 (398)
T ss_pred             CCCCc---cceEEEEcCCH
Confidence            65443   78999998885

>PF13964 Kelch_6: Kelch motif

Probab=99.02  E-value=9.2e-10  Score=71.62  Aligned_cols=50  Identities=28%  Similarity=0.459  Sum_probs=44.2

Q ss_pred             ccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCC
Q 016774          150 ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPAR  206 (383)
Q Consensus       150 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r  206 (383)
                      ||..|+++.+++ +|||+||.......++++++||+.++    +|++++  ++|.+|
T Consensus         1 pR~~~s~v~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~--~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGG-KIYVFGGYDNSGKYSNDVERYDPETN----TWEQLP--PMPTPR   50 (50)
T ss_pred             CCccCEEEEECC-EEEEECCCCCCCCccccEEEEcCCCC----cEEECC--CCCCCC
Confidence            688999999888 99999998664668999999999999    999998  777776

>PLN02772 guanylate kinase

Probab=98.97  E-value=4.8e-09  Score=96.52  Aligned_cols=88  Identities=16%  Similarity=0.246  Sum_probs=76.9

Q ss_pred             CCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEccc
Q 016774          147 APPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGR  225 (383)
Q Consensus       147 ~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~  225 (383)
                      .+.|+.+|+++.+++ ++||+||.+..+...+++++||..+.    +|.... .+..|.+|.+|+++++++++|+|+++.
T Consensus        21 ~~~~~~~~tav~igd-k~yv~GG~~d~~~~~~~v~i~D~~t~----~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~   95 (398)
T PLN02772         21 GVKPKNRETSVTIGD-KTYVIGGNHEGNTLSIGVQILDKITN----NWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG   95 (398)
T ss_pred             cCCCCCcceeEEECC-EEEEEcccCCCccccceEEEEECCCC----cEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence            456888999999998 99999998776557889999999998    999988 789999999999999999999999877


Q ss_pred             CCCCCccccEEEEEccc
Q 016774          226 GVGYEVLNDVWFLDVYE  242 (383)
Q Consensus       226 ~~~~~~~~~v~~~~~~~  242 (383)
                      ...   -+++|.+.+.+
T Consensus        96 ~~~---~~~~w~l~~~t  109 (398)
T PLN02772         96 SAP---DDSIWFLEVDT  109 (398)
T ss_pred             CCC---ccceEEEEcCC
Confidence            432   36799999987

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.90  E-value=1.5e-09  Score=70.28  Aligned_cols=45  Identities=27%  Similarity=0.612  Sum_probs=30.6

Q ss_pred             ccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc
Q 016774          150 ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV  198 (383)
Q Consensus       150 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~  198 (383)
                      ||++|+++.+.+++|||+||.+..+..++++|+||++++    +|++++
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~----~W~~~~   45 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN----TWTRLP   45 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT----EEEE--
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC----EEEECC
Confidence            699999999976799999999877678999999999999    999996

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.89  E-value=4.8e-09  Score=67.81  Aligned_cols=47  Identities=43%  Similarity=0.808  Sum_probs=42.1

Q ss_pred             CCEEEEEcccC-CCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEE
Q 016774          216 GNRTVLFGGRG-VGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL  272 (383)
Q Consensus       216 ~~~i~v~GG~~-~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~  272 (383)
                      +++||||||.. .....++++|+||+.+  .+|+++        ++.|.+|.+|++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~--~~W~~~--------~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDT--NTWTRI--------GDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCC--CEEEEC--------CCCCCCccceEEEE
Confidence            47899999997 4677899999999999  999998        67899999999986

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.88  E-value=5.1e-09  Score=67.68  Aligned_cols=47  Identities=40%  Similarity=0.780  Sum_probs=41.3

Q ss_pred             cEEEEEcccC-CCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEE
Q 016774          162 RKMVIHAGIG-LYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRI  214 (383)
Q Consensus       162 ~~i~v~GG~~-~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~  214 (383)
                      ++|||+||.+ .....++++|+||++++    +|+++.  +.|.+|.+|+++++
T Consensus         2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~----~W~~~~--~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    2 NKLYVFGGYDDDGGTRLNDVWVFDLDTN----TWTRIG--DLPPPRSGHTATVI   49 (49)
T ss_pred             CEEEEECCcCCCCCCEecCEEEEECCCC----EEEECC--CCCCCccceEEEEC
Confidence            4899999997 35678999999999998    999995  88999999999864

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.85  E-value=3.6e-09  Score=68.52  Aligned_cols=44  Identities=39%  Similarity=0.770  Sum_probs=30.8

Q ss_pred             CCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774          205 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI  250 (383)
Q Consensus       205 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i  250 (383)
                      ||.+|+++.++++.|||+||.......++++|+||+++  ++|+++
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~--~~W~~~   44 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIET--NTWTRL   44 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTT--TEEEE-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCC--CEEEEC
Confidence            69999999997799999999976667999999999999  999998

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.78  E-value=1.7e-08  Score=65.17  Aligned_cols=45  Identities=33%  Similarity=0.705  Sum_probs=39.7

Q ss_pred             CCcceeEEEECCEEEEEcCc--cCCCCCccceeeeecccccCCcccccEEEccC
Q 016774           92 GRFGHTCVVIGDCLVLFGGI--NDRGNRHNDTWIGQIACHENLGITLSWRLLDV  143 (383)
Q Consensus        92 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~  143 (383)
                      +|.+|++++++++|||+||.  .......+++++||+       ++.+|+++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~-------~t~~W~~~~~   47 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDT-------ETNQWTELSP   47 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEEC-------CCCEEeecCC
Confidence            68999999999999999999  344566899999999       7999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13854 Kelch_5: Kelch motif

Probab=98.70  E-value=3.4e-08  Score=61.38  Aligned_cols=38  Identities=37%  Similarity=0.805  Sum_probs=34.5

Q ss_pred             CCCCCcceeEEEECCEEEEEcCccC-CCCCccceeeeec
Q 016774           89 IPSGRFGHTCVVIGDCLVLFGGIND-RGNRHNDTWIGQI  126 (383)
Q Consensus        89 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~  126 (383)
                      +|.+|.+|+++.++++|||+||... .....+++|+||+
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l   39 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDL   39 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEEC
Confidence            4889999999999999999999983 6677999999998

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.70  E-value=1.8e-08  Score=64.53  Aligned_cols=45  Identities=27%  Similarity=0.434  Sum_probs=40.5

Q ss_pred             CCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccC
Q 016774           92 GRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDV  143 (383)
Q Consensus        92 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~  143 (383)
                      ||.+|++++++++|||+||.......++++++||+       .+++|+.+++
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-------~~~~W~~~~~   45 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDP-------ETNTWEELPP   45 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEET-------TTTEEEEEEE
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeC-------CCCEEEEcCC
Confidence            68999999999999999999886778999999999       6999999864

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.69  E-value=2.7e-08  Score=63.75  Aligned_cols=44  Identities=25%  Similarity=0.396  Sum_probs=39.5

Q ss_pred             ccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc
Q 016774          150 ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV  198 (383)
Q Consensus       150 ~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~  198 (383)
                      ||..|+++.+++ +||++||.......++++++||+.++    +|++++
T Consensus         1 pR~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~----~W~~~~   44 (47)
T PF01344_consen    1 PRSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETN----TWEELP   44 (47)
T ss_dssp             -BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTT----EEEEEE
T ss_pred             CCccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCC----EEEEcC
Confidence            688999999888 99999999776678999999999999    999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13854 Kelch_5: Kelch motif

Probab=98.66  E-value=5.4e-08  Score=60.45  Aligned_cols=40  Identities=28%  Similarity=0.412  Sum_probs=35.4

Q ss_pred             CCCccccceeEEECCcEEEEEcccCC-CCCcccceEEEeccC
Q 016774          147 APPARGAHAACCIDNRKMVIHAGIGL-YGLRLGDTWVLELSE  187 (383)
Q Consensus       147 ~p~~r~~~~~~~~~~~~i~v~GG~~~-~~~~~~~~~~~d~~~  187 (383)
                      +|.+|++|+++.+++ +|||+||... ....++|+|+||+.+
T Consensus         1 ~P~~R~~hs~~~~~~-~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGN-NIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEECC-EEEEEcCccCCCCCEECcEEEEECCC
Confidence            488999999999987 9999999973 667899999999876

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.62  E-value=1e-07  Score=61.51  Aligned_cols=44  Identities=30%  Similarity=0.586  Sum_probs=38.6

Q ss_pred             ccccceeEEECCcEEEEEccc--CCCCCcccceEEEeccCCcccCceEEcc
Q 016774          150 ARGAHAACCIDNRKMVIHAGI--GLYGLRLGDTWVLELSENFCFGSWQQLV  198 (383)
Q Consensus       150 ~r~~~~~~~~~~~~i~v~GG~--~~~~~~~~~~~~~d~~~~~~~~~W~~~~  198 (383)
                      ||.+|+++..++ +|||+||.  .......++++.||++++    +|+.++
T Consensus         1 ~r~~hs~~~~~~-kiyv~GG~~~~~~~~~~~~v~~~d~~t~----~W~~~~   46 (49)
T PF07646_consen    1 PRYGHSAVVLDG-KIYVFGGYGTDNGGSSSNDVWVFDTETN----QWTELS   46 (49)
T ss_pred             CccceEEEEECC-EEEEECCcccCCCCcccceeEEEECCCC----EEeecC
Confidence            688999998888 99999999  444467899999999999    999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>smart00612 Kelch Kelch domain

Probab=98.25  E-value=2e-06  Score=54.76  Aligned_cols=46  Identities=33%  Similarity=0.537  Sum_probs=39.4

Q ss_pred             EEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEc
Q 016774          163 KMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIG  215 (383)
Q Consensus       163 ~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~  215 (383)
                      +||++||... ...++++++||+.++    +|+.++  ++|.+|..|+++.++
T Consensus         1 ~iyv~GG~~~-~~~~~~v~~yd~~~~----~W~~~~--~~~~~r~~~~~~~~~   46 (47)
T smart00612        1 KIYVVGGFDG-GQRLKSVEVYDPETN----KWTPLP--SMPTPRSGHGVAVIN   46 (47)
T ss_pred             CEEEEeCCCC-CceeeeEEEECCCCC----eEccCC--CCCCccccceEEEeC
Confidence            4899999854 356889999999999    999988  889999999988773

>smart00612 Kelch Kelch domain

Probab=98.12  E-value=3.8e-06  Score=53.44  Aligned_cols=46  Identities=24%  Similarity=0.428  Sum_probs=38.0

Q ss_pred             EEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEEC
Q 016774          104 CLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCID  160 (383)
Q Consensus       104 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~  160 (383)
                      +||++||... ....+++++||+       .+++|+.+.+   +|.+|..|+++.++
T Consensus         1 ~iyv~GG~~~-~~~~~~v~~yd~-------~~~~W~~~~~---~~~~r~~~~~~~~~   46 (47)
T smart00612        1 KIYVVGGFDG-GQRLKSVEVYDP-------ETNKWTPLPS---MPTPRSGHGVAVIN   46 (47)
T ss_pred             CEEEEeCCCC-CceeeeEEEECC-------CCCeEccCCC---CCCccccceEEEeC
Confidence            4899999864 456789999999       6999998765   78999999888765

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.86  E-value=0.002  Score=56.27  Aligned_cols=145  Identities=12%  Similarity=0.086  Sum_probs=87.7

Q ss_pred             eeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCC
Q 016774          122 WIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHP  201 (383)
Q Consensus       122 ~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~  201 (383)
                      ..||+       .+++++.+..    ..-..+.+.+.+.|+.+++.||... +  ...+..|++.+...+-.|.+... .
T Consensus        49 ~~yD~-------~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~-G--~~~ir~~~p~~~~~~~~w~e~~~-~  113 (243)
T PF07250_consen   49 VEYDP-------NTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDND-G--NKAIRIFTPCTSDGTCDWTESPN-D  113 (243)
T ss_pred             EEEec-------CCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCc-c--ccceEEEecCCCCCCCCceECcc-c
Confidence            35777       5888887754    2344455555667889999999743 2  34567777765111227887762 3


Q ss_pred             CCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcc-c---CccceEEecccccCCCCCCCCCceeeEEEEEcCCE
Q 016774          202 SPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVY-E---GFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGR  277 (383)
Q Consensus       202 ~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~-~---~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~  277 (383)
                      +-.+|-..++..+.+++++|+||....      .+.|-+. .   ....|..+.    ......+...+=+.-+ ..+++
T Consensus       114 m~~~RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~----~~~~~~~~nlYP~~~l-lPdG~  182 (243)
T PF07250_consen  114 MQSGRWYPTATTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLS----QTSDTLPNNLYPFVHL-LPDGN  182 (243)
T ss_pred             ccCCCccccceECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecch----hhhccCccccCceEEE-cCCCC
Confidence            778899999999999999999998521      2222222 1   001222221    1111233333334333 48999


Q ss_pred             EEEEcCcCCCCCCCCcEEEEEcC
Q 016774          278 VLIYGGEDSARRRKDDFWVLDTK  300 (383)
Q Consensus       278 l~i~GG~~~~~~~~~~~~~~d~~  300 (383)
                      |++++...        ..+||..
T Consensus       183 lFi~an~~--------s~i~d~~  197 (243)
T PF07250_consen  183 LFIFANRG--------SIIYDYK  197 (243)
T ss_pred             EEEEEcCC--------cEEEeCC
Confidence            99999863        3577876

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.71  E-value=0.0055  Score=53.58  Aligned_cols=147  Identities=14%  Similarity=0.079  Sum_probs=85.0

Q ss_pred             cccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeE
Q 016774           78 GMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAAC  157 (383)
Q Consensus        78 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~  157 (383)
                      .+++++.+....-.=-++++ ..-++++.+.||..+..   +.+-.|+...   ...+..|.+....  +..+|.+.+++
T Consensus        54 ~tn~~rpl~v~td~FCSgg~-~L~dG~ll~tGG~~~G~---~~ir~~~p~~---~~~~~~w~e~~~~--m~~~RWYpT~~  124 (243)
T PF07250_consen   54 NTNTFRPLTVQTDTFCSGGA-FLPDGRLLQTGGDNDGN---KAIRIFTPCT---SDGTCDWTESPND--MQSGRWYPTAT  124 (243)
T ss_pred             CCCcEEeccCCCCCcccCcC-CCCCCCEEEeCCCCccc---cceEEEecCC---CCCCCCceECccc--ccCCCccccce
Confidence            44477776422222222222 22356799999986532   3455677642   1135678876432  77899999999


Q ss_pred             EECCcEEEEEcccCCCCCcccceEEEeccC--CcccCceEEcc--cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccc
Q 016774          158 CIDNRKMVIHAGIGLYGLRLGDTWVLELSE--NFCFGSWQQLV--THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLN  233 (383)
Q Consensus       158 ~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~--~~~~~~W~~~~--~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~  233 (383)
                      .+.|++++|+||..      +..+.|-+..  ......|..+.  ....+...+=+ +..+.+++||+++...       
T Consensus       125 ~L~DG~vlIvGG~~------~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~-~~llPdG~lFi~an~~-------  190 (243)
T PF07250_consen  125 TLPDGRVLIVGGSN------NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPF-VHLLPDGNLFIFANRG-------  190 (243)
T ss_pred             ECCCCCEEEEeCcC------CCcccccCCccCCCCceeeecchhhhccCccccCce-EEEcCCCCEEEEEcCC-------
Confidence            99999999999975      2234443331  11112333232  11223333333 4455579999998863       


Q ss_pred             cEEEEEcccCccce-EEe
Q 016774          234 DVWFLDVYEGFFKW-VQI  250 (383)
Q Consensus       234 ~v~~~~~~~~~~~W-~~i  250 (383)
                       -.+||..+  +++ +.+
T Consensus       191 -s~i~d~~~--n~v~~~l  205 (243)
T PF07250_consen  191 -SIIYDYKT--NTVVRTL  205 (243)
T ss_pred             -cEEEeCCC--CeEEeeC
Confidence             46788888  766 444

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.30  E-value=1.1  Score=42.77  Aligned_cols=203  Identities=14%  Similarity=0.131  Sum_probs=106.0

Q ss_pred             ceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCC-------CCCCCcceeEEEECCEEEEEcCccCCC
Q 016774           43 SLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSG-------IPSGRFGHTCVVIGDCLVLFGGINDRG  115 (383)
Q Consensus        43 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-------~p~~r~~~~~~~~~~~iyv~GG~~~~~  115 (383)
                      +.++.++++|+....       ..++.++..+   ....|+.-...       ...++...+.++.++++|+.+. .   
T Consensus        64 sPvv~~~~vy~~~~~-------g~l~ald~~t---G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~---  129 (394)
T PRK11138         64 HPAVAYNKVYAADRA-------GLVKALDADT---GKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-K---  129 (394)
T ss_pred             ccEEECCEEEEECCC-------CeEEEEECCC---CcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-C---
Confidence            345678899987642       3567777644   33488753211       0112333456677888887542 1   


Q ss_pred             CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceE
Q 016774          116 NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQ  195 (383)
Q Consensus       116 ~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~  195 (383)
                         ..++.+|..     +-+..|+.-...     +. ..+.+.. ++.+|+..+       ...++.+|++++  +..|+
T Consensus       130 ---g~l~ald~~-----tG~~~W~~~~~~-----~~-~ssP~v~-~~~v~v~~~-------~g~l~ald~~tG--~~~W~  185 (394)
T PRK11138        130 ---GQVYALNAE-----DGEVAWQTKVAG-----EA-LSRPVVS-DGLVLVHTS-------NGMLQALNESDG--AVKWT  185 (394)
T ss_pred             ---CEEEEEECC-----CCCCcccccCCC-----ce-ecCCEEE-CCEEEEECC-------CCEEEEEEccCC--CEeee
Confidence               248889872     135678764321     11 1222333 447777432       235899999876  45687


Q ss_pred             EcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCc---eeeEEEE
Q 016774          196 QLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPR---VGHSATL  272 (383)
Q Consensus       196 ~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r---~~~~~~~  272 (383)
                      .-...+....+...+-+.. ++.+|+..+.       ..++.+|++++...|+.-..   ...+.....|   ...+.+ 
T Consensus       186 ~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~---~~~~~~~~~~~~~~~~sP~-  253 (394)
T PRK11138        186 VNLDVPSLTLRGESAPATA-FGGAIVGGDN-------GRVSAVLMEQGQLIWQQRIS---QPTGATEIDRLVDVDTTPV-  253 (394)
T ss_pred             ecCCCCcccccCCCCCEEE-CCEEEEEcCC-------CEEEEEEccCChhhheeccc---cCCCccchhcccccCCCcE-
Confidence            6542111111222233334 4666554332       24888998886667975310   0001000011   112223 


Q ss_pred             EcCCEEEEEcCcCCCCCCCCcEEEEEcCCC
Q 016774          273 ILGGRVLIYGGEDSARRRKDDFWVLDTKAI  302 (383)
Q Consensus       273 ~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~  302 (383)
                      +.++.+|+.+. +      ..++.+|+.+-
T Consensus       254 v~~~~vy~~~~-~------g~l~ald~~tG  276 (394)
T PRK11138        254 VVGGVVYALAY-N------GNLVALDLRSG  276 (394)
T ss_pred             EECCEEEEEEc-C------CeEEEEECCCC
Confidence            36788887552 2      25889998743

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.81  E-value=0.46  Score=42.71  Aligned_cols=119  Identities=9%  Similarity=0.057  Sum_probs=67.8

Q ss_pred             EEEcccCCCCC-cccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccC
Q 016774          165 VIHAGIGLYGL-RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEG  243 (383)
Q Consensus       165 ~v~GG~~~~~~-~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~  243 (383)
                      ||-|-....+. ....+-.||+.+.    +|..+..+  ... .-..+....++++|+.|-..........+-.||..+ 
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~----qW~~~g~~--i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~-   73 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNS----QWSSPGNG--ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN-   73 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCC----EeecCCCC--ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC-
Confidence            34333444443 4567899999998    99988622  211 123344445677777776543332345689999999 


Q ss_pred             ccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEE
Q 016774          244 FFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLD  298 (383)
Q Consensus       244 ~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d  298 (383)
                       .+|+.+...   ....+|.+.............+++.|.. ..+  ..-+..||
T Consensus        74 -~~w~~~~~~---~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~d  121 (281)
T PF12768_consen   74 -QTWSSLGGG---SSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKYD  121 (281)
T ss_pred             -CeeeecCCc---ccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEEc
Confidence             999998510   0124566653333322134467777776 222  23355565

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=95.43  E-value=1.6  Score=37.99  Aligned_cols=197  Identities=15%  Similarity=0.150  Sum_probs=99.8

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCccc-ceeee----CC-EEEEEccccCCCCCCCceEEEEeccCcccccceEEcCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASH-SLNFV----SN-CLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNS   87 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~-~~~~~----~~-~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~   87 (383)
                      .++||.+.+|+.++.....   +.....+ ...-+    ++ +|+.+.... .......+.+|+...     .+|+.+..
T Consensus        17 ~V~NP~T~~~~~LP~~~~~---~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~~-----~~Wr~~~~   87 (230)
T TIGR01640        17 VVWNPSTGQSRWLPTPKSR---RSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLGS-----NSWRTIEC   87 (230)
T ss_pred             EEECCCCCCEEecCCCCCc---ccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeCC-----CCcccccc
Confidence            3678999999999643211   0001111 11111    22 666665421 111234566777744     49999864


Q ss_pred             CCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEE-ccCCCCCCCccc----cceeEEECCc
Q 016774           88 GIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRL-LDVGSIAPPARG----AHAACCIDNR  162 (383)
Q Consensus        88 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~-~~~~~~~p~~r~----~~~~~~~~~~  162 (383)
                      .++........+.+++.+|-+.-.... .....+..||+       .+.+|.. +..    |..+.    ....+..+ +
T Consensus        88 ~~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl-------~~E~f~~~i~~----P~~~~~~~~~~~L~~~~-G  154 (230)
T TIGR01640        88 SPPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDV-------SSERFKEFIPL----PCGNSDSVDYLSLINYK-G  154 (230)
T ss_pred             CCCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEc-------ccceEeeeeec----CccccccccceEEEEEC-C
Confidence            333222222366778888877643221 11125888999       5888984 442    22221    12233344 4


Q ss_pred             EEEEEcccCCCCCcccceEEEe-ccCCcccCceEEcccCCC-CCCCC---CceEEEEcCCEEEEEcccCCCCCccccEEE
Q 016774          163 KMVIHAGIGLYGLRLGDTWVLE-LSENFCFGSWQQLVTHPS-PPARS---GHSLTRIGGNRTVLFGGRGVGYEVLNDVWF  237 (383)
Q Consensus       163 ~i~v~GG~~~~~~~~~~~~~~d-~~~~~~~~~W~~~~~~~~-p~~r~---~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~  237 (383)
                      ++-++......  ..-++|.++ ...+    .|++.-.-+. +.+..   ........+++|++.-... .   ..-+..
T Consensus       155 ~L~~v~~~~~~--~~~~IWvl~d~~~~----~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~---~~~~~~  224 (230)
T TIGR01640       155 KLAVLKQKKDT--NNFDLWVLNDAGKQ----EWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-N---PFYIFY  224 (230)
T ss_pred             EEEEEEecCCC--CcEEEEEECCCCCC----ceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-C---ceEEEE
Confidence            77666543211  124788886 3344    7997652121 11111   1234444567877765431 0   113788


Q ss_pred             EEccc
Q 016774          238 LDVYE  242 (383)
Q Consensus       238 ~~~~~  242 (383)
                      ||+.+
T Consensus       225 y~~~~  229 (230)
T TIGR01640       225 YNVGE  229 (230)
T ss_pred             EeccC
Confidence            88765

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=95.26  E-value=1.8  Score=37.63  Aligned_cols=150  Identities=14%  Similarity=0.082  Sum_probs=79.7

Q ss_pred             ceeeeecccccCCcccccEEEccCCCCCCCccccc-eeEEE----CCcEEEEEcccCCCCCcccceEEEeccCCcccCce
Q 016774          120 DTWIGQIACHENLGITLSWRLLDVGSIAPPARGAH-AACCI----DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSW  194 (383)
Q Consensus       120 ~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~-~~~~~----~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W  194 (383)
                      .+++.|+       .|.+|..++.....+.....+ .....    ++-+++.+.... .......+.+|++.++    .|
T Consensus        15 ~~~V~NP-------~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~~~----~W   82 (230)
T TIGR01640        15 RLVVWNP-------STGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLGSN----SW   82 (230)
T ss_pred             cEEEECC-------CCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeCCC----Cc
Confidence            5788888       599999986422100001111 11111    122455444321 1112356889999998    99


Q ss_pred             EEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEE-ecccccCCCCCCCCCce----eeE
Q 016774          195 QQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQ-IPYELQNIPAGFSLPRV----GHS  269 (383)
Q Consensus       195 ~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~-i~~~~~~~~~~~p~~r~----~~~  269 (383)
                      ..+... .+........+.+ ++.+|-+.-.... .....|..||+.+  .+|.. ++         +|..+.    ...
T Consensus        83 r~~~~~-~~~~~~~~~~v~~-~G~lyw~~~~~~~-~~~~~IvsFDl~~--E~f~~~i~---------~P~~~~~~~~~~~  148 (230)
T TIGR01640        83 RTIECS-PPHHPLKSRGVCI-NGVLYYLAYTLKT-NPDYFIVSFDVSS--ERFKEFIP---------LPCGNSDSVDYLS  148 (230)
T ss_pred             cccccC-CCCccccCCeEEE-CCEEEEEEEECCC-CCcEEEEEEEccc--ceEeeeee---------cCccccccccceE
Confidence            998721 1111112225566 5777776543211 1112699999999  99995 64         222221    222


Q ss_pred             EEEEcCCEEEEEcCcCCCCCCCCcEEEEE
Q 016774          270 ATLILGGRVLIYGGEDSARRRKDDFWVLD  298 (383)
Q Consensus       270 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~d  298 (383)
                      .+ ..+++|-++.......  .-++|+++
T Consensus       149 L~-~~~G~L~~v~~~~~~~--~~~IWvl~  174 (230)
T TIGR01640       149 LI-NYKGKLAVLKQKKDTN--NFDLWVLN  174 (230)
T ss_pred             EE-EECCEEEEEEecCCCC--cEEEEEEC
Confidence            33 3678888776543211  24788876

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.29  E-value=0.76  Score=41.35  Aligned_cols=105  Identities=14%  Similarity=0.138  Sum_probs=60.7

Q ss_pred             EEccc-CCCCC-ccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEE
Q 016774          221 LFGGR-GVGYE-VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLD  298 (383)
Q Consensus       221 v~GG~-~~~~~-~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d  298 (383)
                      ++||. ..... ....+..||+++  .+|..+.        .--.... ..+....+++||+.|-+...+.....+-.||
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~--~qW~~~g--------~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd   70 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDN--SQWSSPG--------NGISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYD   70 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCC--CEeecCC--------CCceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEe
Confidence            35554 32222 466799999999  9999983        2222222 2222225778888887665553455678888


Q ss_pred             cCCCcccccccccccccccccccceeeccC--CCCCCCccceeeeecCCCcEEEEEcCc
Q 016774          299 TKAIPFTSVQQSMLDSRGLLLNMWKRLRAE--GYKPNCRSFHRACPDYSGRYLYVFGGM  355 (383)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~~p~~r~~~~~~~~~~~~~l~v~GG~  355 (383)
                      .+                  +.+|..+...  ...|.+-.. -.....+..++++.|..
T Consensus        71 ~~------------------~~~w~~~~~~~s~~ipgpv~a-~~~~~~d~~~~~~aG~~  110 (281)
T PF12768_consen   71 FK------------------NQTWSSLGGGSSNSIPGPVTA-LTFISNDGSNFWVAGRS  110 (281)
T ss_pred             cC------------------CCeeeecCCcccccCCCcEEE-EEeeccCCceEEEecee
Confidence            88                  6788877552  134433221 11122345677777765

>PRK13684 Ycf48-like protein; Provisional

Probab=93.67  E-value=6  Score=36.77  Aligned_cols=204  Identities=11%  Similarity=0.104  Sum_probs=97.4

Q ss_pred             cccceEEcCCCCCCCCcceeEEEECC-EEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCcccccee
Q 016774           78 GMLKWQKVNSGIPSGRFGHTCVVIGD-CLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAA  156 (383)
Q Consensus        78 ~~~~W~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~  156 (383)
                      ...+|+++......+.....+..+++ .+++.|.. .      .+++=+-       .-.+|+.+...    ..-..+..
T Consensus       117 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-G------~i~~S~D-------gG~tW~~~~~~----~~g~~~~i  178 (334)
T PRK13684        117 GGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-G------AIYRTTD-------GGKNWEALVED----AAGVVRNL  178 (334)
T ss_pred             CCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-c------eEEEECC-------CCCCceeCcCC----CcceEEEE
Confidence            44599988532112222233444443 36655532 1      2332221       36789987542    12223344


Q ss_pred             EEECCcEEEEEcccCCCCCcccceEEE-eccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccE
Q 016774          157 CCIDNRKMVIHAGIGLYGLRLGDTWVL-ELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDV  235 (383)
Q Consensus       157 ~~~~~~~i~v~GG~~~~~~~~~~~~~~-d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v  235 (383)
                      ....++.+++.|..   +    .++.- +-...    +|+.+.   .+..+..+++....++.++++|...        .
T Consensus       179 ~~~~~g~~v~~g~~---G----~i~~s~~~gg~----tW~~~~---~~~~~~l~~i~~~~~g~~~~vg~~G--------~  236 (334)
T PRK13684        179 RRSPDGKYVAVSSR---G----NFYSTWEPGQT----AWTPHQ---RNSSRRLQSMGFQPDGNLWMLARGG--------Q  236 (334)
T ss_pred             EECCCCeEEEEeCC---c----eEEEEcCCCCC----eEEEee---CCCcccceeeeEcCCCCEEEEecCC--------E
Confidence            44455445544432   2    23332 33334    799885   2444555556666668888887653        2


Q ss_pred             EEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCccccccccccccc
Q 016774          236 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSR  315 (383)
Q Consensus       236 ~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  315 (383)
                      .++....+..+|+.+.      .........-+++....++.+++.|..-.       ++ .....              
T Consensus       237 ~~~~s~d~G~sW~~~~------~~~~~~~~~l~~v~~~~~~~~~~~G~~G~-------v~-~S~d~--------------  288 (334)
T PRK13684        237 IRFNDPDDLESWSKPI------IPEITNGYGYLDLAYRTPGEIWAGGGNGT-------LL-VSKDG--------------  288 (334)
T ss_pred             EEEccCCCCCcccccc------CCccccccceeeEEEcCCCCEEEEcCCCe-------EE-EeCCC--------------
Confidence            3332122226899763      11010111123333324667888775421       22 21111              


Q ss_pred             ccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCc
Q 016774          316 GLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM  355 (383)
Q Consensus       316 ~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~  355 (383)
                         ..+|+.+......|.  ..+.+ +..++++.++.|..
T Consensus       289 ---G~tW~~~~~~~~~~~--~~~~~-~~~~~~~~~~~G~~  322 (334)
T PRK13684        289 ---GKTWEKDPVGEEVPS--NFYKI-VFLDPEKGFVLGQR  322 (334)
T ss_pred             ---CCCCeECCcCCCCCc--ceEEE-EEeCCCceEEECCC
Confidence               468998754222332  22334 33356788888865

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=93.57  E-value=4.5  Score=37.70  Aligned_cols=133  Identities=16%  Similarity=0.157  Sum_probs=75.1

Q ss_pred             ECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCc----
Q 016774          101 IGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLR----  176 (383)
Q Consensus       101 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~----  176 (383)
                      .+++|+..+..       ..+.+||.       ++..-...+.   ++.+...-.++.+++ +||++.........    
T Consensus        75 ~gskIv~~d~~-------~~t~vyDt-------~t~av~~~P~---l~~pk~~pisv~VG~-~LY~m~~~~~~~~~~~~~  136 (342)
T PF07893_consen   75 HGSKIVAVDQS-------GRTLVYDT-------DTRAVATGPR---LHSPKRCPISVSVGD-KLYAMDRSPFPEPAGRPD  136 (342)
T ss_pred             cCCeEEEEcCC-------CCeEEEEC-------CCCeEeccCC---CCCCCcceEEEEeCC-eEEEeeccCccccccCcc
Confidence            37888888664       23778998       4555554332   444455556677787 69999876322211    


Q ss_pred             --ccceEEEec----cCCcccCceEEcccCCCCCCCC-------CceEEEEcCCEEEE-EcccCCCCCccccEEEEEccc
Q 016774          177 --LGDTWVLEL----SENFCFGSWQQLVTHPSPPARS-------GHSLTRIGGNRTVL-FGGRGVGYEVLNDVWFLDVYE  242 (383)
Q Consensus       177 --~~~~~~~d~----~~~~~~~~W~~~~~~~~p~~r~-------~~~~~~~~~~~i~v-~GG~~~~~~~~~~v~~~~~~~  242 (383)
                        .=++..|+.    ........|+.++  +.|..+.       ..+-+++++..|+| .-|..      ...|.||+.+
T Consensus       137 ~~~FE~l~~~~~~~~~~~~~~w~W~~LP--~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~  208 (342)
T PF07893_consen  137 FPCFEALVYRPPPDDPSPEESWSWRSLP--PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTES  208 (342)
T ss_pred             ceeEEEeccccccccccCCCcceEEcCC--CCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCC
Confidence              112333331    1223456788876  2232221       12222334577777 43331      2379999999


Q ss_pred             CccceEEecccccCCCCCCCCCceeeE
Q 016774          243 GFFKWVQIPYELQNIPAGFSLPRVGHS  269 (383)
Q Consensus       243 ~~~~W~~i~~~~~~~~~~~p~~r~~~~  269 (383)
                        .+|+++        +++..|-.+.+
T Consensus       209 --~~W~~~--------GdW~LPF~G~a  225 (342)
T PF07893_consen  209 --HEWRKH--------GDWMLPFHGQA  225 (342)
T ss_pred             --cceeec--------cceecCcCCcc
Confidence              999999        56666655443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=91.74  E-value=12  Score=35.50  Aligned_cols=195  Identities=14%  Similarity=0.192  Sum_probs=102.6

Q ss_pred             ccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccc
Q 016774           41 SHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHND  120 (383)
Q Consensus        41 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  120 (383)
                      ....+..++++|+.+.       ...++.+|..+   ....|+.-...   . ...+-++.++.+|+..+.       ..
T Consensus       113 ~~~~~v~~~~v~v~~~-------~g~l~ald~~t---G~~~W~~~~~~---~-~~ssP~v~~~~v~v~~~~-------g~  171 (394)
T PRK11138        113 SGGVTVAGGKVYIGSE-------KGQVYALNAED---GEVAWQTKVAG---E-ALSRPVVSDGLVLVHTSN-------GM  171 (394)
T ss_pred             ccccEEECCEEEEEcC-------CCEEEEEECCC---CCCcccccCCC---c-eecCCEEECCEEEEECCC-------CE
Confidence            3445566888886432       23577787644   33488754211   1 122335567778875432       24


Q ss_pred             eeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccC
Q 016774          121 TWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTH  200 (383)
Q Consensus       121 ~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~  200 (383)
                      ++.+|..     +-+..|+.-.... ....+...+.+...+ .+|+..+       ...++.+|..++  ...|+.....
T Consensus       172 l~ald~~-----tG~~~W~~~~~~~-~~~~~~~~sP~v~~~-~v~~~~~-------~g~v~a~d~~~G--~~~W~~~~~~  235 (394)
T PRK11138        172 LQALNES-----DGAVKWTVNLDVP-SLTLRGESAPATAFG-GAIVGGD-------NGRVSAVLMEQG--QLIWQQRISQ  235 (394)
T ss_pred             EEEEEcc-----CCCEeeeecCCCC-cccccCCCCCEEECC-EEEEEcC-------CCEEEEEEccCC--hhhheecccc
Confidence            8889982     1245687643211 001111223333344 6666432       135788888775  4468653211


Q ss_pred             CCCC------CCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEc
Q 016774          201 PSPP------ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLIL  274 (383)
Q Consensus       201 ~~p~------~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~  274 (383)
                      +...      .....+.+.. ++.+|+.+..       ..++.+|+.++...|+.-.       +.   ..   ..+ ..
T Consensus       236 ~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~-------~~---~~---~~~-~~  293 (394)
T PRK11138        236 PTGATEIDRLVDVDTTPVVV-GGVVYALAYN-------GNLVALDLRSGQIVWKREY-------GS---VN---DFA-VD  293 (394)
T ss_pred             CCCccchhcccccCCCcEEE-CCEEEEEEcC-------CeEEEEECCCCCEEEeecC-------CC---cc---CcE-EE
Confidence            1000      0111233344 5777765432       2589999998666797641       11   11   123 36


Q ss_pred             CCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          275 GGRVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       275 ~~~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                      ++.||+....       ..++.+|.++
T Consensus       294 ~~~vy~~~~~-------g~l~ald~~t  313 (394)
T PRK11138        294 GGRIYLVDQN-------DRVYALDTRG  313 (394)
T ss_pred             CCEEEEEcCC-------CeEEEEECCC
Confidence            8888886532       3588999874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=90.99  E-value=11  Score=35.87  Aligned_cols=107  Identities=12%  Similarity=0.142  Sum_probs=62.1

Q ss_pred             CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceE
Q 016774          102 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTW  181 (383)
Q Consensus       102 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~  181 (383)
                      +....+++|+..      =+|.||+       ++.+-+++.+....+ .+..+...+..++.++++-|..      .-++
T Consensus       269 G~~~i~~s~rrk------y~ysyDl-------e~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~------G~I~  328 (514)
T KOG2055|consen  269 GHSVIFTSGRRK------YLYSYDL-------ETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNN------GHIH  328 (514)
T ss_pred             CceEEEecccce------EEEEeec-------cccccccccCCCCcc-cchhheeEecCCCCeEEEcccC------ceEE
Confidence            343777777643      3789999       788888887654333 2333333332333566666642      3467


Q ss_pred             EEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEccc
Q 016774          182 VLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE  242 (383)
Q Consensus       182 ~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~  242 (383)
                      .+...|+    .|..--  .++......+.... ...|++.||.+       .||++|+..
T Consensus       329 lLhakT~----eli~s~--KieG~v~~~~fsSd-sk~l~~~~~~G-------eV~v~nl~~  375 (514)
T KOG2055|consen  329 LLHAKTK----ELITSF--KIEGVVSDFTFSSD-SKELLASGGTG-------EVYVWNLRQ  375 (514)
T ss_pred             eehhhhh----hhhhee--eeccEEeeEEEecC-CcEEEEEcCCc-------eEEEEecCC
Confidence            7766665    543221  22322333333333 36788888875       599999988

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.43  E-value=17  Score=34.71  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=57.6

Q ss_pred             ceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccc-----eEEecccccCCCCCCCCCcee
Q 016774          193 SWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFK-----WVQIPYELQNIPAGFSLPRVG  267 (383)
Q Consensus       193 ~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~-----W~~i~~~~~~~~~~~p~~r~~  267 (383)
                      .|+.+.   .+..+...++....++.+++.|...       .++.-+...  ..     |+++.         .+..+..
T Consensus       271 ~W~~~~---~~~~~~l~~v~~~~dg~l~l~g~~G-------~l~~S~d~G--~~~~~~~f~~~~---------~~~~~~~  329 (398)
T PLN00033        271 YWQPHN---RASARRIQNMGWRADGGLWLLTRGG-------GLYVSKGTG--LTEEDFDFEEAD---------IKSRGFG  329 (398)
T ss_pred             ceEEec---CCCccceeeeeEcCCCCEEEEeCCc-------eEEEecCCC--Ccccccceeecc---------cCCCCcc
Confidence            389886   3334444455555568888887553       233333333  43     44442         2222332


Q ss_pred             eEEEEE-cCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCC
Q 016774          268 HSATLI-LGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSG  346 (383)
Q Consensus       268 ~~~~~~-~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  346 (383)
                      ...+.. .++.+++.|..-.       ++.-...                  ..+|+++......+...+   .+.+...
T Consensus       330 l~~v~~~~d~~~~a~G~~G~-------v~~s~D~------------------G~tW~~~~~~~~~~~~ly---~v~f~~~  381 (398)
T PLN00033        330 ILDVGYRSKKEAWAAGGSGI-------LLRSTDG------------------GKSWKRDKGADNIAANLY---SVKFFDD  381 (398)
T ss_pred             eEEEEEcCCCcEEEEECCCc-------EEEeCCC------------------CcceeEccccCCCCccee---EEEEcCC
Confidence            222323 5677888886521       2222211                  568998764333333333   3343445


Q ss_pred             cEEEEEcC
Q 016774          347 RYLYVFGG  354 (383)
Q Consensus       347 ~~l~v~GG  354 (383)
                      ++.|+.|-
T Consensus       382 ~~g~~~G~  389 (398)
T PLN00033        382 KKGFVLGN  389 (398)
T ss_pred             CceEEEeC
Confidence            78888883

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=90.03  E-value=16  Score=34.00  Aligned_cols=54  Identities=11%  Similarity=0.089  Sum_probs=34.8

Q ss_pred             ECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccC
Q 016774          159 IDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRG  226 (383)
Q Consensus       159 ~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~  226 (383)
                      +.+++|+..+..       ..+.+||.++.    .-...+  .+..+...-.++.++ ++||++....
T Consensus        74 l~gskIv~~d~~-------~~t~vyDt~t~----av~~~P--~l~~pk~~pisv~VG-~~LY~m~~~~  127 (342)
T PF07893_consen   74 LHGSKIVAVDQS-------GRTLVYDTDTR----AVATGP--RLHSPKRCPISVSVG-DKLYAMDRSP  127 (342)
T ss_pred             ecCCeEEEEcCC-------CCeEEEECCCC----eEeccC--CCCCCCcceEEEEeC-CeEEEeeccC
Confidence            344488887553       33899999987    444444  344444455667775 7799998763

>PRK13684 Ycf48-like protein; Provisional

Probab=89.02  E-value=19  Score=33.40  Aligned_cols=161  Identities=10%  Similarity=0.065  Sum_probs=79.5

Q ss_pred             cccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeee-ecccccCCcccccEEEccCCCCCCCcccccee
Q 016774           78 GMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIG-QIACHENLGITLSWRLLDVGSIAPPARGAHAA  156 (383)
Q Consensus        78 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~-d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~  156 (383)
                      ...+|+++....  .-..+.+....+..++..|...      .++.- |-       ...+|+.+..    +..+.-+++
T Consensus       160 gG~tW~~~~~~~--~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~-------gg~tW~~~~~----~~~~~l~~i  220 (334)
T PRK13684        160 GGKNWEALVEDA--AGVVRNLRRSPDGKYVAVSSRG------NFYSTWEP-------GQTAWTPHQR----NSSRRLQSM  220 (334)
T ss_pred             CCCCceeCcCCC--cceEEEEEECCCCeEEEEeCCc------eEEEEcCC-------CCCeEEEeeC----CCcccceee
Confidence            445999886322  2234455555555445444322      13322 22       2467988743    334445555


Q ss_pred             EEECCcEEEEEcccCCCCCcccceEEE-eccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccE
Q 016774          157 CCIDNRKMVIHAGIGLYGLRLGDTWVL-ELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDV  235 (383)
Q Consensus       157 ~~~~~~~i~v~GG~~~~~~~~~~~~~~-d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v  235 (383)
                      ....++.+++.|..   +     ..++ +.+..   -.|+.+...........+++....++.+++.|...       .+
T Consensus       221 ~~~~~g~~~~vg~~---G-----~~~~~s~d~G---~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G-------~v  282 (334)
T PRK13684        221 GFQPDGNLWMLARG---G-----QIRFNDPDDL---ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG-------TL  282 (334)
T ss_pred             eEcCCCCEEEEecC---C-----EEEEccCCCC---CccccccCCccccccceeeEEEcCCCCEEEEcCCC-------eE
Confidence            55566678888643   2     1223 22322   38987642111111222334444456788887653       13


Q ss_pred             EEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCc
Q 016774          236 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGE  284 (383)
Q Consensus       236 ~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~  284 (383)
                      +.-.-..  .+|+.++     .....|  .....++...+++.|+.|..
T Consensus       283 ~~S~d~G--~tW~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~G~~  322 (334)
T PRK13684        283 LVSKDGG--KTWEKDP-----VGEEVP--SNFYKIVFLDPEKGFVLGQR  322 (334)
T ss_pred             EEeCCCC--CCCeECC-----cCCCCC--cceEEEEEeCCCceEEECCC
Confidence            3322233  7899983     112222  22333443367788887754

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.87  E-value=18  Score=32.97  Aligned_cols=248  Identities=14%  Similarity=0.138  Sum_probs=103.5

Q ss_pred             cccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeE
Q 016774           19 ESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTC   98 (383)
Q Consensus        19 ~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~   98 (383)
                      .-.+|.........   +......++...++..+|.|-.         -.++...+   ...+|++++-..+.+-..+.+
T Consensus        45 GG~tW~~~~~~~~~---~~~~~l~~I~f~~~~g~ivG~~---------g~ll~T~D---gG~tW~~v~l~~~lpgs~~~i  109 (302)
T PF14870_consen   45 GGKTWQPVSLDLDN---PFDYHLNSISFDGNEGWIVGEP---------GLLLHTTD---GGKTWERVPLSSKLPGSPFGI  109 (302)
T ss_dssp             TTSS-EE-----S--------EEEEEEEETTEEEEEEET---------TEEEEESS---TTSS-EE----TT-SS-EEEE
T ss_pred             CCccccccccCCCc---cceeeEEEEEecCCceEEEcCC---------ceEEEecC---CCCCcEEeecCCCCCCCeeEE
Confidence            34578887644322   2111122333457788887631         12333322   455999986333444444555


Q ss_pred             EEE-CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcc
Q 016774           99 VVI-GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRL  177 (383)
Q Consensus        99 ~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~  177 (383)
                      ..+ .+.+.++|..   +    .+|+=.=       .-.+|+.+....    .-.........++.+++.+-.       
T Consensus       110 ~~l~~~~~~l~~~~---G----~iy~T~D-------gG~tW~~~~~~~----~gs~~~~~r~~dG~~vavs~~-------  164 (302)
T PF14870_consen  110 TALGDGSAELAGDR---G----AIYRTTD-------GGKTWQAVVSET----SGSINDITRSSDGRYVAVSSR-------  164 (302)
T ss_dssp             EEEETTEEEEEETT---------EEEESS-------TTSSEEEEE-S--------EEEEEE-TTS-EEEEETT-------
T ss_pred             EEcCCCcEEEEcCC---C----cEEEeCC-------CCCCeeEcccCC----cceeEeEEECCCCcEEEEECc-------
Confidence            554 4457777643   1    2443221       377899876421    111222333466666655532       


Q ss_pred             cceE-EEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccC
Q 016774          178 GDTW-VLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN  256 (383)
Q Consensus       178 ~~~~-~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~  256 (383)
                      ..++ ..|+-..    .|+...   .+..|...++....++.++++. .+.      .+.+=+...+..+|++-.     
T Consensus       165 G~~~~s~~~G~~----~w~~~~---r~~~~riq~~gf~~~~~lw~~~-~Gg------~~~~s~~~~~~~~w~~~~-----  225 (302)
T PF14870_consen  165 GNFYSSWDPGQT----TWQPHN---RNSSRRIQSMGFSPDGNLWMLA-RGG------QIQFSDDPDDGETWSEPI-----  225 (302)
T ss_dssp             SSEEEEE-TT-S----S-EEEE-----SSS-EEEEEE-TTS-EEEEE-TTT------EEEEEE-TTEEEEE---B-----
T ss_pred             ccEEEEecCCCc----cceEEc---cCccceehhceecCCCCEEEEe-CCc------EEEEccCCCCcccccccc-----
Confidence            2233 4456555    798885   4455777777777777888765 321      133333112226787741     


Q ss_pred             CCCCCCCCceeeEEEEE-cCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCc
Q 016774          257 IPAGFSLPRVGHSATLI-LGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCR  335 (383)
Q Consensus       257 ~~~~~p~~r~~~~~~~~-~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r  335 (383)
                        ...+...++.--+.. .++.+++.||...        ..+..+.                 -.+|++.......|..-
T Consensus       226 --~~~~~~~~~~ld~a~~~~~~~wa~gg~G~--------l~~S~Dg-----------------GktW~~~~~~~~~~~n~  278 (302)
T PF14870_consen  226 --IPIKTNGYGILDLAYRPPNEIWAVGGSGT--------LLVSTDG-----------------GKTWQKDRVGENVPSNL  278 (302)
T ss_dssp             ---TTSS--S-EEEEEESSSS-EEEEESTT---------EEEESST-----------------TSS-EE-GGGTTSSS--
T ss_pred             --CCcccCceeeEEEEecCCCCEEEEeCCcc--------EEEeCCC-----------------CccceECccccCCCCce
Confidence              112222333222222 5678999888742        1222221                 56899887643444433


Q ss_pred             cceeeeecCCCcEEEEEcCc
Q 016774          336 SFHRACPDYSGRYLYVFGGM  355 (383)
Q Consensus       336 ~~~~~~~~~~~~~l~v~GG~  355 (383)
                      +  ..+.+ ..++-+|+|-.
T Consensus       279 ~--~i~f~-~~~~gf~lG~~  295 (302)
T PF14870_consen  279 Y--RIVFV-NPDKGFVLGQD  295 (302)
T ss_dssp             ---EEEEE-ETTEEEEE-ST
T ss_pred             E--EEEEc-CCCceEEECCC
Confidence            2  33333 45788998854

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=88.80  E-value=22  Score=33.83  Aligned_cols=106  Identities=9%  Similarity=0.074  Sum_probs=59.2

Q ss_pred             CcE-EEEEcccCCCCCcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEE
Q 016774          161 NRK-MVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFL  238 (383)
Q Consensus       161 ~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~  238 (383)
                      ++. .++++|.      ..-+|.||+.+.    +-+++. ....+..-.....+.. ++.++++-|...      .|+.+
T Consensus       268 ~G~~~i~~s~r------rky~ysyDle~a----k~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G------~I~lL  330 (514)
T KOG2055|consen  268 NGHSVIFTSGR------RKYLYSYDLETA----KVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNG------HIHLL  330 (514)
T ss_pred             CCceEEEeccc------ceEEEEeecccc----ccccccCCCCcccchhheeEecC-CCCeEEEcccCc------eEEee
Confidence            434 6777774      234899999998    777776 2222321111223334 455677766632      47788


Q ss_pred             EcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          239 DVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       239 ~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                      ...+  ..|..-        -..+-.....+ .......|++.||..       +||++|+..
T Consensus       331 hakT--~eli~s--------~KieG~v~~~~-fsSdsk~l~~~~~~G-------eV~v~nl~~  375 (514)
T KOG2055|consen  331 HAKT--KELITS--------FKIEGVVSDFT-FSSDSKELLASGGTG-------EVYVWNLRQ  375 (514)
T ss_pred             hhhh--hhhhhe--------eeeccEEeeEE-EecCCcEEEEEcCCc-------eEEEEecCC
Confidence            7777  666321        11122222222 222445677777763       599999984

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=86.56  E-value=29  Score=32.64  Aligned_cols=158  Identities=14%  Similarity=0.087  Sum_probs=82.4

Q ss_pred             ceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCcccee
Q 016774           43 SLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTW  122 (383)
Q Consensus        43 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  122 (383)
                      +.+..++++|+.+..       ..++.++..+   ....|+.-...    +...+.++.++.+|+.+. +      ..++
T Consensus        60 ~p~v~~~~v~v~~~~-------g~v~a~d~~t---G~~~W~~~~~~----~~~~~p~v~~~~v~v~~~-~------g~l~  118 (377)
T TIGR03300        60 QPAVAGGKVYAADAD-------GTVVALDAET---GKRLWRVDLDE----RLSGGVGADGGLVFVGTE-K------GEVI  118 (377)
T ss_pred             ceEEECCEEEEECCC-------CeEEEEEccC---CcEeeeecCCC----CcccceEEcCCEEEEEcC-C------CEEE
Confidence            445567787776541       3577787644   33478754221    122234455667776443 1      2588


Q ss_pred             eeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCC
Q 016774          123 IGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPS  202 (383)
Q Consensus       123 ~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~  202 (383)
                      .+|..     +-+..|+....     ... ....+. .++.+|+..+       ...++.+|++++  +..|+.....+.
T Consensus       119 ald~~-----tG~~~W~~~~~-----~~~-~~~p~v-~~~~v~v~~~-------~g~l~a~d~~tG--~~~W~~~~~~~~  177 (377)
T TIGR03300       119 ALDAE-----DGKELWRAKLS-----SEV-LSPPLV-ANGLVVVRTN-------DGRLTALDAATG--ERLWTYSRVTPA  177 (377)
T ss_pred             EEECC-----CCcEeeeeccC-----cee-ecCCEE-ECCEEEEECC-------CCeEEEEEcCCC--ceeeEEccCCCc
Confidence            89872     13456875422     111 122223 3447776432       245899998875  356875541111


Q ss_pred             CCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774          203 PPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI  250 (383)
Q Consensus       203 p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i  250 (383)
                      ...+...+.+.. ++.+ ++|...      ..++.+|++++...|+.-
T Consensus       178 ~~~~~~~sp~~~-~~~v-~~~~~~------g~v~ald~~tG~~~W~~~  217 (377)
T TIGR03300       178 LTLRGSASPVIA-DGGV-LVGFAG------GKLVALDLQTGQPLWEQR  217 (377)
T ss_pred             eeecCCCCCEEE-CCEE-EEECCC------CEEEEEEccCCCEeeeec
Confidence            111222333444 3544 444432      158899998755678653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=82.76  E-value=20  Score=27.82  Aligned_cols=80  Identities=10%  Similarity=0.093  Sum_probs=48.0

Q ss_pred             EEEEEcccCCCCCcccceEEEeccCCcccCceEEcccC-CCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEE-c
Q 016774          163 KMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTH-PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD-V  240 (383)
Q Consensus       163 ~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~-~  240 (383)
                      .+|-..-.  .......+..||+.+.    +|..++.. ...........+.+ +++|-++.-........-++|+++ .
T Consensus         7 vly~~a~~--~~~~~~~IvsFDv~~E----~f~~i~~P~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~~~iWvLeD~   79 (129)
T PF08268_consen    7 VLYWLAWS--EDSDNNVIVSFDVRSE----KFRFIKLPEDPYSSDCSSTLIEY-KGKLALVSYNDQGEPDSIDIWVLEDY   79 (129)
T ss_pred             EEEeEEEE--CCCCCcEEEEEEcCCc----eEEEEEeeeeeccccCccEEEEe-CCeEEEEEecCCCCcceEEEEEeecc
Confidence            55555443  2234567999999999    99888721 12234445556666 477666544422212234789986 3


Q ss_pred             ccCccceEEec
Q 016774          241 YEGFFKWVQIP  251 (383)
Q Consensus       241 ~~~~~~W~~i~  251 (383)
                      ..  ..|++..
T Consensus        80 ~k--~~Wsk~~   88 (129)
T PF08268_consen   80 EK--QEWSKKH   88 (129)
T ss_pred             cc--ceEEEEE
Confidence            34  7899874

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=82.66  E-value=54  Score=32.63  Aligned_cols=77  Identities=12%  Similarity=0.152  Sum_probs=43.0

Q ss_pred             eEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCC-CCCC-----CCCceEEEEcCCEEEEEcccCCCC
Q 016774          156 ACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHP-SPPA-----RSGHSLTRIGGNRTVLFGGRGVGY  229 (383)
Q Consensus       156 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~-~p~~-----r~~~~~~~~~~~~i~v~GG~~~~~  229 (383)
                      .++.+ +.||+...       ...++.+|.+++  +..|+.-...+ ...+     ......++. ++++|+....    
T Consensus        65 Pvv~~-g~vyv~s~-------~g~v~AlDa~TG--k~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~d----  129 (527)
T TIGR03075        65 PLVVD-GVMYVTTS-------YSRVYALDAKTG--KELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLD----  129 (527)
T ss_pred             CEEEC-CEEEEECC-------CCcEEEEECCCC--ceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCC----
Confidence            33444 48888543       235899998876  45787654111 0000     011112333 4666653221    


Q ss_pred             CccccEEEEEcccCccceEEe
Q 016774          230 EVLNDVWFLDVYEGFFKWVQI  250 (383)
Q Consensus       230 ~~~~~v~~~~~~~~~~~W~~i  250 (383)
                         ..++.+|.+++...|+.-
T Consensus       130 ---g~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075       130 ---ARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             ---CEEEEEECCCCCEEeecc
Confidence               259999999877889764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=82.53  E-value=31  Score=29.68  Aligned_cols=153  Identities=16%  Similarity=0.229  Sum_probs=82.0

Q ss_pred             EEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcc
Q 016774           98 CVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRL  177 (383)
Q Consensus        98 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~  177 (383)
                      .+..++++|+..+       ...++++|..     +-+..|+.-..     .+ .....+ ..++.+|+...-       
T Consensus        32 ~~~~~~~v~~~~~-------~~~l~~~d~~-----tG~~~W~~~~~-----~~-~~~~~~-~~~~~v~v~~~~-------   85 (238)
T PF13360_consen   32 AVPDGGRVYVASG-------DGNLYALDAK-----TGKVLWRFDLP-----GP-ISGAPV-VDGGRVYVGTSD-------   85 (238)
T ss_dssp             EEEETTEEEEEET-------TSEEEEEETT-----TSEEEEEEECS-----SC-GGSGEE-EETTEEEEEETT-------
T ss_pred             EEEeCCEEEEEcC-------CCEEEEEECC-----CCCEEEEeecc-----cc-ccceee-ecccccccccce-------
Confidence            3447888888842       2358999972     13567876432     11 111233 344478776521       


Q ss_pred             cceEEEeccCCcccCceEE-cccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccC
Q 016774          178 GDTWVLELSENFCFGSWQQ-LVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN  256 (383)
Q Consensus       178 ~~~~~~d~~~~~~~~~W~~-~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~  256 (383)
                      +.++.+|..++  +..|+. ... ..+..........+.++.+++....       ..++.+|+.++...|+.-.     
T Consensus        86 ~~l~~~d~~tG--~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------g~l~~~d~~tG~~~w~~~~-----  150 (238)
T PF13360_consen   86 GSLYALDAKTG--KVLWSIYLTS-SPPAGVRSSSSPAVDGDRLYVGTSS-------GKLVALDPKTGKLLWKYPV-----  150 (238)
T ss_dssp             SEEEEEETTTS--CEEEEEEE-S-SCTCSTB--SEEEEETTEEEEEETC-------SEEEEEETTTTEEEEEEES-----
T ss_pred             eeeEecccCCc--ceeeeecccc-ccccccccccCceEecCEEEEEecc-------CcEEEEecCCCcEEEEeec-----
Confidence            26999997776  568984 432 1121222222333334666555432       2589999998667787752     


Q ss_pred             CCCCCCCC-------ceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          257 IPAGFSLP-------RVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       257 ~~~~~p~~-------r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                        ...+..       ... +..++.++.+|+..+...       +..+|+++
T Consensus       151 --~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~g~-------~~~~d~~t  192 (238)
T PF13360_consen  151 --GEPRGSSPISSFSDIN-GSPVISDGRVYVSSGDGR-------VVAVDLAT  192 (238)
T ss_dssp             --STT-SS--EEEETTEE-EEEECCTTEEEEECCTSS-------EEEEETTT
T ss_pred             --CCCCCCcceeeecccc-cceEEECCEEEEEcCCCe-------EEEEECCC
Confidence              111110       111 223335677777765532       56678874

...

>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A

Probab=81.99  E-value=23  Score=31.49  Aligned_cols=160  Identities=13%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             EEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCce-EEEEcCCEEEEEcccCCCCCccccE
Q 016774          157 CCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHS-LTRIGGNRTVLFGGRGVGYEVLNDV  235 (383)
Q Consensus       157 ~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~-~~~~~~~~i~v~GG~~~~~~~~~~v  235 (383)
                      +...++.+++. ..............++-+.+   .+|+...... ........ .+...++.|+++--.. ...   .+
T Consensus       114 i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G---~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~  184 (275)
T PF13088_consen  114 IQLPDGRLIAP-YYHESGGSFSAFVYYSDDGG---KTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GND---DI  184 (275)
T ss_dssp             EEECTTEEEEE-EEEESSCEEEEEEEEESSTT---SSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SST---EE
T ss_pred             eEecCCCEEEE-EeeccccCcceEEEEeCCCC---ceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CCC---cE
Confidence            34456677776 22111222444556666655   4898887211 21123333 3344667888775442 111   44


Q ss_pred             EEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEE-EEcCCCcccccccccccc
Q 016774          236 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWV-LDTKAIPFTSVQQSMLDS  314 (383)
Q Consensus       236 ~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~  314 (383)
                      +.........+|+...      ...+|.+.....++...++.++++......   ...+.+ +....             
T Consensus       185 ~~~~S~D~G~TWs~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---r~~l~l~~S~D~-------------  242 (275)
T PF13088_consen  185 YISRSTDGGRTWSPPQ------PTNLPNPNSSISLVRLSDGRLLLVYNNPDG---RSNLSLYVSEDG-------------  242 (275)
T ss_dssp             EEEEESSTTSS-EEEE------EEECSSCCEEEEEEECTTSEEEEEEECSST---SEEEEEEEECTT-------------
T ss_pred             EEEEECCCCCcCCCce------ecccCcccCCceEEEcCCCCEEEEEECCCC---CCceEEEEEeCC-------------
Confidence            4444443347899863      234566666555555467788877773211   112222 22221             


Q ss_pred             cccccccceeeccCCCCCCCccceeeeecCCCcEEEE
Q 016774          315 RGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYV  351 (383)
Q Consensus       315 ~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v  351 (383)
                          ..+|.........+...+++...+...+++|+|
T Consensus       243 ----g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i  275 (275)
T PF13088_consen  243 ----GKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI  275 (275)
T ss_dssp             ----CEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred             ----CCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence                568887654322333445555555544567775

...

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=81.94  E-value=55  Score=32.20  Aligned_cols=134  Identities=15%  Similarity=0.099  Sum_probs=68.3

Q ss_pred             cceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCC-CCCCcc-ccceeEEECCcEEEEEcccC
Q 016774           94 FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGS-IAPPAR-GAHAACCIDNRKMVIHAGIG  171 (383)
Q Consensus        94 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~-~~p~~r-~~~~~~~~~~~~i~v~GG~~  171 (383)
                      ...+-++.++++|+....       ..++.+|..     +-+..|+.-.... ....+. .....+..+++++|+...  
T Consensus        53 ~~~sPvv~~g~vy~~~~~-------g~l~AlD~~-----tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--  118 (488)
T cd00216          53 QEGTPLVVDGDMYFTTSH-------SALFALDAA-----TGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--  118 (488)
T ss_pred             cccCCEEECCEEEEeCCC-------CcEEEEECC-----CChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--
Confidence            334456778888886542       257888872     1256687643221 001111 111122223247776432  


Q ss_pred             CCCCcccceEEEeccCCcccCceEEcccCCC-CCCCCCceEEEEcCCEEEEEcccCCCC---CccccEEEEEcccCccce
Q 016774          172 LYGLRLGDTWVLELSENFCFGSWQQLVTHPS-PPARSGHSLTRIGGNRTVLFGGRGVGY---EVLNDVWFLDVYEGFFKW  247 (383)
Q Consensus       172 ~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~~i~v~GG~~~~~---~~~~~v~~~~~~~~~~~W  247 (383)
                           ...++.+|.++.  +..|+.-..... +......+.++. ++.+| +|......   .....++.||.+++...|
T Consensus       119 -----~g~v~AlD~~TG--~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         119 -----DGRLVALDAETG--KQVWKFGNNDQVPPGYTMTGAPTIV-KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             -----CCeEEEEECCCC--CEeeeecCCCCcCcceEecCCCEEE-CCEEE-EeccccccccCCCCcEEEEEECCCCceee
Confidence                 246899998876  457876541111 111112233344 35544 44332111   123469999999877889


Q ss_pred             EEe
Q 016774          248 VQI  250 (383)
Q Consensus       248 ~~i  250 (383)
                      +.-
T Consensus       190 ~~~  192 (488)
T cd00216         190 RFY  192 (488)
T ss_pred             Eee
Confidence            764

The alignment model contains an 8-bladed beta-propeller.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=80.09  E-value=38  Score=29.12  Aligned_cols=192  Identities=17%  Similarity=0.187  Sum_probs=102.5

Q ss_pred             eeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeee
Q 016774           45 NFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIG  124 (383)
Q Consensus        45 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  124 (383)
                      +..++++|+..+       ...++.++..+   ....|+.-..    .+........++.+|+....       +.++.+
T Consensus        33 ~~~~~~v~~~~~-------~~~l~~~d~~t---G~~~W~~~~~----~~~~~~~~~~~~~v~v~~~~-------~~l~~~   91 (238)
T PF13360_consen   33 VPDGGRVYVASG-------DGNLYALDAKT---GKVLWRFDLP----GPISGAPVVDGGRVYVGTSD-------GSLYAL   91 (238)
T ss_dssp             EEETTEEEEEET-------TSEEEEEETTT---SEEEEEEECS----SCGGSGEEEETTEEEEEETT-------SEEEEE
T ss_pred             EEeCCEEEEEcC-------CCEEEEEECCC---CCEEEEeecc----ccccceeeecccccccccce-------eeeEec
Confidence            336778888742       35778888744   3347876431    22222257778888887621       158888


Q ss_pred             ecccccCCcccccEE-EccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCC
Q 016774          125 QIACHENLGITLSWR-LLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSP  203 (383)
Q Consensus       125 d~~~~~~~~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p  203 (383)
                      |..     +-+..|+ ......  +.+........+.++.+|+...       ...++.+|++++  +..|+...  ..+
T Consensus        92 d~~-----tG~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG--~~~w~~~~--~~~  153 (238)
T PF13360_consen   92 DAK-----TGKVLWSIYLTSSP--PAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTG--KLLWKYPV--GEP  153 (238)
T ss_dssp             ETT-----TSCEEEEEEE-SSC--TCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTT--EEEEEEES--STT
T ss_pred             ccC-----Ccceeeeecccccc--ccccccccCceEecCEEEEEec-------cCcEEEEecCCC--cEEEEeec--CCC
Confidence            862     2366788 443321  1222222222333436666542       356899999876  44566543  222


Q ss_pred             CCCC-------CceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCC
Q 016774          204 PARS-------GHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGG  276 (383)
Q Consensus       204 ~~r~-------~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~  276 (383)
                      ....       ..+...+.++.+|+..+..       .+..+|+.++...|+..           +..  ........++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~~~w~~~-----------~~~--~~~~~~~~~~  213 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATGEKLWSKP-----------ISG--IYSLPSVDGG  213 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTTEEEEEEC-----------SS---ECECEECCCT
T ss_pred             CCCcceeeecccccceEEECCEEEEEcCCC-------eEEEEECCCCCEEEEec-----------CCC--ccCCceeeCC
Confidence            1111       0122333356788777653       16667988843348432           111  1111223667


Q ss_pred             EEEEEcCcCCCCCCCCcEEEEEcCCC
Q 016774          277 RVLIYGGEDSARRRKDDFWVLDTKAI  302 (383)
Q Consensus       277 ~l~i~GG~~~~~~~~~~~~~~d~~~~  302 (383)
                      .||+.. .+      ..++.+|+++.
T Consensus       214 ~l~~~~-~~------~~l~~~d~~tG  232 (238)
T PF13360_consen  214 TLYVTS-SD------GRLYALDLKTG  232 (238)
T ss_dssp             EEEEEE-TT------TEEEEEETTTT
T ss_pred             EEEEEe-CC------CEEEEEECCCC
Confidence            777766 32      45899999864

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	383
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	3e-43
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	5e-37
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-28
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-27
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-10
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	8e-07
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	6e-09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-06
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-04
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	6e-08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	6e-06
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	7e-08
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-07
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-07
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	7e-07
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-04

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  158 bits (401), Expect = 3e-43
 Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 31/282 (10%)

Query: 11  LYRQVTQLESVSCRNISDADGDLVLPNPRASHSLNFVS--NCLVLFGGGCEGGRHLDDTW 68
           + +     + +  +NI  +  ++  P  R  H+   +S  N L+L GG     + L D W
Sbjct: 414 ILQLSIHYDKIDMKNIEVSSSEV--PVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNW 471

Query: 69  VAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGD-CLVLFGGINDRGNRHNDTWIGQIA 127
           +  +        +W  + S +   RF H+   + D  +++ GG+ +              
Sbjct: 472 IFDMKTR-----EWSMIKS-LSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVT---- 521

Query: 128 CHENLGITLSWRLLDVGSIAPPARGAHAACCID---NRKMVIHAGIGLYGLRLGDTWVLE 184
                     ++ +             A    D    + +++  G            + +
Sbjct: 522 -------EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFK 574

Query: 185 LSENFCFGSWQQLVTHPSPP-ARSGHSLTRIGGNRTVLFGGRGVG--YEVLNDVWFLDVY 241
                       +     P   R G  +  I   + ++ GG      ++  N +  LD  
Sbjct: 575 YDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP- 633

Query: 242 EGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGG 283
                   IP   + I    SL   G S      G + I GG
Sbjct: 634 -LSETLTSIPIS-RRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  141 bits (355), Expect = 5e-37
 Identities = 52/328 (15%), Positives = 96/328 (29%), Gaps = 46/328 (14%)

Query: 35  LPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRF 94
            P  R    ++   N +   GG       +++     +  D   M   +  +S +P  R 
Sbjct: 384 CPINRKFGDVDVAGNDVFYMGGSNPYR--VNEILQLSIHYDKIDMKNIEVSSSEVPVARM 441

Query: 95  GHTCVVIG--DCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARG 152
            HT   I   + L+L GG        +D WI  +        T  W ++         R 
Sbjct: 442 CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK-------TREWSMIKS---LSHTRF 491

Query: 153 AHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVT----HPSPPARSG 208
            H+AC + +  ++I  G+           +  ++E      ++ +        +    +G
Sbjct: 492 RHSACSLPDGNVLILGGVT----EGPAMLLYNVTEE----IFKDVTPKDEFFQNSLVSAG 543

Query: 209 HSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGH 268
                +     +L GG      V +                   +    P      R G 
Sbjct: 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL---FQRYGS 600

Query: 269 SATLILGGRVLIYGGEDSARR--RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLR 326
               I   ++LI GG   +    R +    LD  +   TS+  S               R
Sbjct: 601 QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISR--------------R 646

Query: 327 AEGYKPNCRSFHRACPDYSGRYLYVFGG 354
                    +         G  +++ GG
Sbjct: 647 IWEDHSLMLAGFSLVSTSMGT-IHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  117 bits (293), Expect = 1e-28
 Identities = 48/305 (15%), Positives = 87/305 (28%), Gaps = 42/305 (13%)

Query: 63  HLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTW 122
           ++ D +  +   D     +  KV        F   C      ++                
Sbjct: 305 NVGDMFQLWESADEATKKELLKVEPFDELEEFHLFCH---HYVLCHATNYKEFAFTQGFL 361

Query: 123 IGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWV 182
             +     NL +   ++LL+     P  R         N    +    G    R+ +   
Sbjct: 362 FDRSISEINLTVDEDYQLLECEC--PINRKFGDVDVAGNDVFYMG---GSNPYRVNEILQ 416

Query: 183 LELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVL-FGGRGVGYEVLNDVWFLDVY 241
           L +  +       ++ +   P AR  H+ T I  N  +L  GGR   ++ L+D W  D+ 
Sbjct: 417 LSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476

Query: 242 EGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA 301
               +W  I     ++       R  HSA  +  G VLI GG            + +   
Sbjct: 477 TR--EWSMIK----SLSH----TRFRHSACSLPDGNVLILGGVTEG----PAMLLYNVTE 522

Query: 302 IPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRAC-PDYSGRYLYVFGGMVDGLV 360
                              ++K +  +               D   +   + GG      
Sbjct: 523 ------------------EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQT 564

Query: 361 QPADT 365
             +D 
Sbjct: 565 TVSDK 569

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  113 bits (283), Expect = 2e-27
 Identities = 43/294 (14%), Positives = 81/294 (27%), Gaps = 36/294 (12%)

Query: 79  MLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSW 138
              +Q +    P  R      V G+ +   GG N    R N+     I   +   I +  
Sbjct: 374 DEDYQLLECECPINRKFGDVDVAGNDVFYMGGSN--PYRVNEILQLSIHYDK---IDMKN 428

Query: 139 RLLDVGSIAPPARGAHAACCI-DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQL 197
             +    + P AR  H    I  N ++++  G       L D W+ ++        W   
Sbjct: 429 IEVSSSEV-PVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR----EWSM- 482

Query: 198 VTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 257
                   R  HS   +     ++ GG   G      +   +V E    +  +  + +  
Sbjct: 483 -IKSLSHTRFRHSACSLPDGNVLILGGVTEG----PAMLLYNVTEE--IFKDVTPKDEFF 535

Query: 258 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGL 317
                    G     +    +++ GG        D   +    A   T            
Sbjct: 536 QNSLV--SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT------------ 581

Query: 318 LLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFD 371
                  ++   +    R   +       + L + GG     +     S +  D
Sbjct: 582 --EPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSPSGLFDRTNSIISLD 632

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 89.8 bits (222), Expect = 1e-19
 Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 28/208 (13%)

Query: 35  LPNPRASHSLNFVSN-CLVLFGGGCEGGR-HLDDTWVAYVGNDFQGMLKWQKVNS--GIP 90
           L + R  HS   + +  +++ GG  EG    L +               ++ V       
Sbjct: 486 LSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNV----------TEEIFKDVTPKDEFF 535

Query: 91  SGRFGHTCVVIG----DCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSI 146
                   +         ++L GG  D+    +   I +    +    T    ++     
Sbjct: 536 QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKY---DAENATEPITVIKKLQH 592

Query: 147 APPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQL-----VTHP 201
               R       I  RK++I  G    GL      ++ L       +   +     +   
Sbjct: 593 PLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE--TLTSIPISRRIWED 650

Query: 202 SPPARSGHSLTRIGGNRTVLFGGRGVGY 229
                +G SL         + GG    Y
Sbjct: 651 HSLMLAGFSLVSTSMGTIHIIGGGATCY 678

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 88.5 bits (219), Expect = 1e-19
 Identities = 58/379 (15%), Positives = 95/379 (25%), Gaps = 71/379 (18%)

Query: 35  LPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRF 94
            P P  S +    ++ + +  G      +  DT             KW  + +     R 
Sbjct: 6   TPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAK--------DKKWTALAAFPGGPRD 57

Query: 95  GHTCVVIGDCLVLFGGINDRGNR----HNDTWIGQIACHENLGITLSWRLLDVGSIAPPA 150
             T   I   L +FGGI           ND              T SW    + S AP  
Sbjct: 58  QATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK-------TNSWV--KLMSHAPMG 108

Query: 151 RGAHAACCIDNRKMVI------------------------HAGIGLYGLRLGDTWVLELS 186
              H     + +  V                            I  +             
Sbjct: 109 MAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNK 168

Query: 187 ENFCF----GSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE 242
               F      W      P     +G ++   G ++T L  G        + V+ LD   
Sbjct: 169 FLLSFDPSTQQWSYAGESP-WYGTAGAAVVNKG-DKTWLINGEAKPGLRTDAVFELDFTG 226

Query: 243 GFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRK---DDFWVLDT 299
              KW ++       P        G  A  I    ++  GG      R+   +       
Sbjct: 227 NNLKWNKLA------PVSSPDGVAGGFAG-ISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279

Query: 300 KAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGL 359
                 S    +  +       W +    G     R++  + P      L + GG   G 
Sbjct: 280 GLKKSYSTDIHLWHN-----GKWDKS---GELSQGRAYGVSLP--WNNSLLIIGGETAGG 329

Query: 360 VQPADTSGLRFDGRLLLVE 378
               D+  +      + V+
Sbjct: 330 KAVTDSVLITVKDNKVTVQ 348

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 28/211 (13%), Positives = 47/211 (22%), Gaps = 25/211 (11%)

Query: 54  FGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGIND 113
           F    E                     +W         G  G   V  GD   L  G   
Sbjct: 157 FDKKAEDYFFNKFLLSFDPSTQ-----QWSYAGESPWYGTAGAAVVNKGDKTWLINGEAK 211

Query: 114 RGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVI---HAGI 170
            G R +  +      +        W  L   S  P       A   ++  +         
Sbjct: 212 PGLRTDAVFELDFTGNNL-----KWNKLAPVSS-PDGVAGGFAGISNDSLIFAGGAGFKG 265

Query: 171 GLYGLRLGDTWVLE----LSENFCF----GSWQQLVTHPSPPARSGHSLTRIGGNRTVLF 222
                + G  +  E               G W +         R+         N  ++ 
Sbjct: 266 SRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPW-NNSLLII 322

Query: 223 GGRGVGYEVLNDVWFLDVYEGFFKWVQIPYE 253
           GG   G + + D   + V +       + + 
Sbjct: 323 GGETAGGKAVTDSVLITVKDNKVTVQNLEHH 353

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 49.6 bits (118), Expect = 8e-07
 Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 40/159 (25%)

Query: 201 PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAG 260
            +P      +          +  G           + LD      KW  +       P G
Sbjct: 5   ETPVPFKSGTGAIDND-TVYIGLGSAG-----TAWYKLDTQAKDKKWTALA----AFPGG 54

Query: 261 FSLPRVGHSATLILGGRVLIYGG----EDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRG 316
              PR   ++   + G + ++GG     +   +  +D    + K                
Sbjct: 55  ---PRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK---------------- 94

Query: 317 LLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM 355
              N W +L +    P   + H           YV GG+
Sbjct: 95  --TNSWVKLMSH--APMGMAGHVTFV--HNGKAYVTGGV 127

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 39/256 (15%), Positives = 67/256 (26%), Gaps = 43/256 (16%)

Query: 35  LPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRF 94
               R   +  F  N + + GG       +      Y   +      W       P+ R 
Sbjct: 42  PFEKRRDAACVFWDNVVYILGG--SQLFPIKRMDC-Y---NVVKD-SWYSKLG-PPTPRD 93

Query: 95  GHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAP--PARG 152
                     +   GG     +                  T SW      +       R 
Sbjct: 94  SLAACAAEGKIYTSGGSEVGNSALYLFECYDTR-------TESWH-----TKPSMLTQRC 141

Query: 153 AHAACCIDNRKMVI--HAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHS 210
           +H     +    V     G  + G  L    V + +      +W +L   P   AR  H 
Sbjct: 142 SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE----TWTEL--CPMIEARKNHG 195

Query: 211 LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSA 270
           L  +   +    GG+  G   L++V + D+     +W  +        +      V    
Sbjct: 196 LVFVKD-KIFAVGGQN-GLGGLDNVEYYDIKLN--EWKMV--------SPMPWKGVTVKC 243

Query: 271 TLILGGRVLIYGGEDS 286
              +G  V +  G   
Sbjct: 244 A-AVGSIVYVLAGFQG 258

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 36/235 (15%), Positives = 57/235 (24%), Gaps = 61/235 (25%)

Query: 35  LPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRF 94
            P PR S +       +   GG   G   L          +      W    S + + R 
Sbjct: 88  PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE-----SWHTKPS-MLTQRC 141

Query: 95  GHTCVVIGDCLVLFGGINDRGNR------------HNDTWIGQIACHENLGITLSWRLLD 142
            H  V     + + GG                     +TW                    
Sbjct: 142 SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT------------------- 182

Query: 143 VGSIAP--PARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCF----GSWQQ 196
              + P   AR  H    + ++   I A +G      G   +  L     +      W+ 
Sbjct: 183 --ELCPMIEARKNHGLVFVKDK---IFA-VG------GQNGLGGLDNVEYYDIKLNEWKM 230

Query: 197 LVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 251
           +   P P          +G     +  G   G   L  +   +      KWV   
Sbjct: 231 VS--PMPWKGVTVKCAAVGS-IVYVLAGFQ-GVGRLGHILEYNTETD--KWVANS 279

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 43/284 (15%), Positives = 66/284 (23%), Gaps = 71/284 (25%)

Query: 81  KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRL 140
            W  +       R    CV   + + + GG               +          SW  
Sbjct: 35  SWTDIRC-PFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVV-------KDSWY- 83

Query: 141 LDVGSIAPP--ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 198
               S   P   R + AAC  + +      G  +    L      +        SW    
Sbjct: 84  ----SKLGPPTPRDSLAACAAEGKIYTS-GGSEVGNSALYLFECYDTRTE----SWHTK- 133

Query: 199 THPSPPARSGHSLTR-------IGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 251
                  R  H +          GG       G  V   VLN     D       W ++ 
Sbjct: 134 -PSMLTQRCSHGMVEANGLIYVCGG-----SLGNNVSGRVLNSCEVYDPATE--TWTELC 185

Query: 252 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSM 311
             +          R  H     +  ++   GG++      D+    D K           
Sbjct: 186 -PMIE-------ARKNHGLV-FVKDKIFAVGGQNGLGGL-DNVEYYDIKL---------- 225

Query: 312 LDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM 355
                   N WK +      P      +         +YV  G 
Sbjct: 226 --------NEWKMVSP---MPWKGVTVKCAA-VGSI-VYVLAGF 256

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 46/337 (13%), Positives = 81/337 (24%), Gaps = 80/337 (23%)

Query: 35  LPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGN-DFQGMLKWQKVNSGIPSGR 93
              P+   SL    N + + GG      + +D   AY    D     +W  +   +PS R
Sbjct: 32  SQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS-EWLGMPP-LPSPR 89

Query: 94  FGHTCVVIGDCLVLFGGINDRGNRH-----------NDTWIGQIACHENLGITLSWRLLD 142
                    + + + GG   +               +  W                    
Sbjct: 90  CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-------------------- 129

Query: 143 VGSIAPP---ARGAHAACCIDNRKMVIHA--GIGLYGLRLGDTWVLELSENFCFGSWQQL 197
               + P       H      +    ++   G G     L    V +  +      W++L
Sbjct: 130 --GESDPLPYVVYGHTVLSHMDL---VYVIGGKGSDRKCLNKMCVYDPKKF----EWKEL 180

Query: 198 VTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 257
              P   ARS    T   G R ++  G      + +      + +   KW          
Sbjct: 181 A--PMQTARSLFGATVHDG-RIIVAAGVT-DTGLTSSAEVYSITDN--KWAPF------- 227

Query: 258 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGL 317
              F   R   S    L G +   GG  +      +             +     +    
Sbjct: 228 -EAFPQERSSLSLV-SLVGTLYAIGGFATLETESGEL-----VPTELNDIW--RYNEE-- 276

Query: 318 LLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGG 354
               W+ +              A   +    L V   
Sbjct: 277 -EKKWEGVL-----REIAYAAGAT--FLPVRLNVLRL 305

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 45/280 (16%), Positives = 76/280 (27%), Gaps = 58/280 (20%)

Query: 81  KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRL 140
           +    +      +   + V   + + + GG+    +   D         ++L     W  
Sbjct: 24  ECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHL--DSEWL- 80

Query: 141 LDVGSIAP--PARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCF----GSW 194
                + P    R         N    I+  +G  G  + D     L    C+      W
Sbjct: 81  ----GMPPLPSPRCLFGLGEALNS---IYV-VG--GREIKDGERC-LDSVMCYDRLSFKW 129

Query: 195 QQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL 254
            +    P P    GH++         + GG+G   + LN +   D  +   +W ++    
Sbjct: 130 GESD--PLPYVVYGHTVLSHMD-LVYVIGGKGSDRKCLNKMCVYDPKKF--EWKEL---- 180

Query: 255 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDS 314
               A     R    AT +  GR+++  G            V                  
Sbjct: 181 ----APMQTARSLFGAT-VHDGRIIVAAGVTDTGLTS-SAEVYSITD------------- 221

Query: 315 RGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGG 354
                N W    A    P  RS            LY  GG
Sbjct: 222 -----NKWAPFEA---FPQERSSLSLVS--LVGTLYAIGG 251

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 43/277 (15%), Positives = 72/277 (25%), Gaps = 64/277 (23%)

Query: 35  LPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGN-DFQGMLKWQKVNSGIPSGR 93
              PR   S+    N + + GG      + D    +Y    D     +W  +   +PS R
Sbjct: 43  EQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-EWVGLPP-LPSAR 100

Query: 94  FGHTCVVIGDCLVLFGGINDRGNRH----------NDTWIGQIACHENLGITLSWRLLDV 143
                  + D + +  G + +                 W                     
Sbjct: 101 CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS-------------------- 140

Query: 144 GSIAP--PARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCF----GSWQQL 197
             +         H     +     I+  +G  G           +  F +    G W+ L
Sbjct: 141 -EVKNLPIKVYGHNVISHNGM---IYC-LG--GKTDDKK---CTNRVFIYNPKKGDWKDL 190

Query: 198 VTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 257
              P    RS   +    G + V+ GG      +   V   D+     KW  +       
Sbjct: 191 A--PMKTPRSMFGVAIHKG-KIVIAGGVT-EDGLSASVEAFDLKTN--KWEVM------- 237

Query: 258 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDF 294
              F   R   S    L G +   GG    +    +F
Sbjct: 238 -TEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEF 272

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 41/278 (14%), Positives = 75/278 (26%), Gaps = 55/278 (19%)

Query: 81  KWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRL 140
           +           R   + V   + + + GG+       +          +   ++  W  
Sbjct: 35  ECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLD--NVSSEWV- 91

Query: 141 LDVGSIAP--PARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV 198
                + P   AR       +D++  V+          L      +         W ++ 
Sbjct: 92  ----GLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAA----KWSEV- 142

Query: 199 THPSPPARSGHSLTRIGGNRTVLF--GGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN 256
               P    GH++    G   +++  GG+    +  N V+  +  +G   W  +      
Sbjct: 143 -KNLPIKVYGHNVISHNG---MIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDL------ 190

Query: 257 IPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRG 316
             A    PR       I  G+++I GG              D K                
Sbjct: 191 --APMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSA-SVEAFDLKT--------------- 231

Query: 317 LLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGG 354
              N W+ +      P  RS            LY  GG
Sbjct: 232 ---NKWEVMTE---FPQERSSISLVS--LAGSLYAIGG 261

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 50/261 (19%), Positives = 77/261 (29%), Gaps = 44/261 (16%)

Query: 35  LPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRF 94
           +  PR    L   +  L++ GG       +D               +W  + S I   R 
Sbjct: 2   MQGPRTRARLG-ANEVLLVVGGFGSQQSPIDVVEKYDPKTQ-----EWSFLPS-ITRKRR 54

Query: 95  GHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAP--PARG 152
               V + D + + GG +   +R +          E       W      S+AP    RG
Sbjct: 55  YVASVSLHDRIYVIGGYDG-RSRLSSVECLDYTADE----DGVWY-----SVAPMNVRRG 104

Query: 153 AHAACCIDNRKMVIHAGIGLYG--LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHS 210
              A  + +    I+   G +    R       + + +     W  L       AR G  
Sbjct: 105 LAGATTLGDM---IYV-SGGFDGSRRHTSMERYDPNID----QWSML--GDMQTAREGAG 154

Query: 211 LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSA 270
           L    G      GG   G  +LN V   D + G   W  +           +  R G   
Sbjct: 155 LVVASG-VIYCLGGYD-GLNILNSVEKYDPHTG--HWTNV--------TPMATKRSGAGV 202

Query: 271 TLILGGRVLIYGGEDSARRRK 291
            L L   + + GG D      
Sbjct: 203 AL-LNDHIYVVGGFDGTAHLS 222

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 45/268 (16%), Positives = 70/268 (26%), Gaps = 69/268 (25%)

Query: 35  LPNPRASHSLNFVSNCLVLFGG---GCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPS 91
           L  PR+  +   V   L   GG     +G              +     +W      +  
Sbjct: 57  LQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-----QWSPCAP-MSV 110

Query: 92  GRFGHTCVVIGDCLVLFGGINDRG--------NRHNDTWIGQIACHENLGITLSWRLLDV 143
            R      VI   +   GG +               D W                     
Sbjct: 111 PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH-------------------- 150

Query: 144 GSIAP--PARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCF----GSWQQL 197
             +AP    R       ++     ++A +G      G      L+   C+      W+ +
Sbjct: 151 -LVAPMLTRRIGVGVAVLNRL---LYA-VG------GFDGTNRLNSAECYYPERNEWRMI 199

Query: 198 VTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI 257
                   RSG  +  +        GG   G + LN V   DV      W  +       
Sbjct: 200 T--AMNTIRSGAGVCVLHN-CIYAAGGYD-GQDQLNSVERYDVETE--TWTFV------- 246

Query: 258 PAGFSLPRVGHSATLILGGRVLIYGGED 285
            A     R     T +  GR+ + GG D
Sbjct: 247 -APMKHRRSALGIT-VHQGRIYVLGGYD 272

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 43/265 (16%), Positives = 75/265 (28%), Gaps = 65/265 (24%)

Query: 35  LPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRF 94
           LP+ R    + +++  +    GG  G   +          D     +W  V + +   R 
Sbjct: 48  LPSRRCRAGMVYMAGLVFAV-GGFNGSLRVRTVDSYDPVKD-----QWTSVAN-MRDRRS 100

Query: 95  GHTCVVIGDCLVLFGGINDRG--------NRHNDTWIGQIACHENLGITLSWRLLDVGSI 146
                V+   L   GG +           N  ++ W                       +
Sbjct: 101 TLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF---------------------HV 139

Query: 147 AP--PARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCF----GSWQQLVTH 200
           AP    R +     +      ++A +G  G  +     L   E  C+      W  +   
Sbjct: 140 APMNTRRSSVGVGVVGGL---LYA-VG--GYDVASRQCLSTVE--CYNATTNEWTYIA-- 189

Query: 201 PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAG 260
                RSG  +  +        GG   G  V   V   D       W Q+        A 
Sbjct: 190 EMSTRRSGAGVGVLNN-LLYAVGGHD-GPLVRKSVEVYDPTTN--AWRQV--------AD 237

Query: 261 FSLPRVGHSATLILGGRVLIYGGED 285
            ++ R        + G + + GG+D
Sbjct: 238 MNMCRRNAGVC-AVNGLLYVVGGDD 261

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 45/270 (16%), Positives = 73/270 (27%), Gaps = 67/270 (24%)

Query: 37  NPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGH 96
           + R           L++  GG    + +          +     +W +V   +PS R   
Sbjct: 3   SVRTRLRTPMNLPKLMVVVGGQ-APKAIRSVECYDFKEE-----RWHQVAE-LPSRRCRA 55

Query: 97  TCVVIGDCLVLFGGINDRG--------NRHNDTWIGQIACHENLGITLSWRLLDVGSIAP 148
             V +   +   GG N           +   D W                      S+A 
Sbjct: 56  GMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT---------------------SVAN 94

Query: 149 --PARGAHAACCIDNRKMVI--HAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPP 204
               R    A  ++     +    G       L       +  N     W  +   P   
Sbjct: 95  MRDRRSTLGAAVLNGLLYAVGGFDGST----GLSSVEAYNIKSN----EWFHVA--PMNT 144

Query: 205 ARSGHSLTRIGGNRTVLF--GGR-GVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGF 261
            RS   +  +GG    L+  GG      + L+ V   +      +W  I  E+       
Sbjct: 145 RRSSVGVGVVGGL---LYAVGGYDVASRQCLSTVECYNATTN--EWTYIA-EM------- 191

Query: 262 SLPRVGHSATLILGGRVLIYGGEDSARRRK 291
           S  R G    + L   +   GG D    RK
Sbjct: 192 STRRSGAGVGV-LNNLLYAVGGHDGPLVRK 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	383
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.96
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.15
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.05
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.45
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.32
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.99
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.98
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.21
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	93.46
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	93.09
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	92.84
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	92.77
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	92.37
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	92.35
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	92.3
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	91.6
3jrp_A	379	Fusion protein of protein transport protein SEC13	91.45
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	90.04
3jro_A	753	Fusion protein of protein transport protein SEC13	89.45
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	89.41
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	89.3
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	89.13
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.64
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	88.58
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	87.82
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	87.43
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	87.37
3v9f_A	781	Two-component system sensor histidine kinase/RESP	86.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	86.31
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	86.08
4a2l_A	795	BT_4663, two-component system sensor histidine kin	85.57
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	85.49
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	84.12
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	83.14
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	83.08
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	82.81
3jro_A	753	Fusion protein of protein transport protein SEC13	82.47
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	82.24
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	81.83
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	80.41
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	80.34
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	80.16

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.4e-41  Score=311.63  Aligned_cols=259  Identities=18%  Similarity=0.186  Sum_probs=217.9

Q ss_pred             CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCcc---
Q 016774           36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGIN---  112 (383)
Q Consensus        36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~---  112 (383)
                      |.+|..|+++.++++||++||.  .....+++++|++..+     +|+++. .+|.+|.+|+++.++++|||+||..   
T Consensus        12 ~~~~~~~~~~~~~~~i~v~GG~--~~~~~~~~~~~d~~~~-----~W~~~~-~~p~~r~~~~~~~~~~~lyv~GG~~~~~   83 (308)
T 1zgk_A           12 GLVPRGSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSNG-----TWLRLA-DLQVPRSGLAGCVVGGLLYAVGGRNNSP   83 (308)
T ss_dssp             ---------CCCCCCEEEECCB--SSSBCCCEEEEETTTT-----EEEECC-CCSSCCBSCEEEEETTEEEEECCEEEET
T ss_pred             CeeeCCccccCCCCEEEEEeCc--CCCCcceEEEEcCCCC-----eEeECC-CCCcccccceEEEECCEEEEECCCcCCC
Confidence            7899999999999999999997  4567889999999555     999996 5788999999999999999999984   


Q ss_pred             CCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccC
Q 016774          113 DRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFG  192 (383)
Q Consensus       113 ~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~  192 (383)
                      ......+++++||+       .+++|+++..   +|.+|..|+++.+++ +||++||.... ..++++++||+.++    
T Consensus        84 ~~~~~~~~~~~~d~-------~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~-~~~~~~~~yd~~~~----  147 (308)
T 1zgk_A           84 DGNTDSSALDCYNP-------MTNQWSPCAP---MSVPRNRIGVGVIDG-HIYAVGGSHGC-IHHNSVERYEPERD----  147 (308)
T ss_dssp             TEEEECCCEEEEET-------TTTEEEECCC---CSSCCBTCEEEEETT-EEEEECCEETT-EECCCEEEEETTTT----
T ss_pred             CCCeecceEEEECC-------CCCeEeECCC---CCcCccccEEEEECC-EEEEEcCCCCC-cccccEEEECCCCC----
Confidence            33446789999999       6999999865   788999999999877 99999998543 46789999999999    


Q ss_pred             ceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEE
Q 016774          193 SWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL  272 (383)
Q Consensus       193 ~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~  272 (383)
                      +|++++  ++|.+|..|+++.+ +++||++||... ....+++++||+.+  ++|+.+        ..+|.+|..|++++
T Consensus       148 ~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~-~~~~~~~~~yd~~~--~~W~~~--------~~~p~~r~~~~~~~  213 (308)
T 1zgk_A          148 EWHLVA--PMLTRRIGVGVAVL-NRLLYAVGGFDG-TNRLNSAECYYPER--NEWRMI--------TAMNTIRSGAGVCV  213 (308)
T ss_dssp             EEEECC--CCSSCCBSCEEEEE-TTEEEEECCBCS-SCBCCCEEEEETTT--TEEEEC--------CCCSSCCBSCEEEE
T ss_pred             eEeECC--CCCccccceEEEEE-CCEEEEEeCCCC-CCcCceEEEEeCCC--CeEeeC--------CCCCCccccceEEE
Confidence            999998  78999999999999 699999999863 34588999999999  999998        46889999999887


Q ss_pred             EcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEE
Q 016774          273 ILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVF  352 (383)
Q Consensus       273 ~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~  352 (383)
                       .+++|||+||.+.. ...+++++||++                  +.+|+.+..   +|.+|..|+++++  +++|||+
T Consensus       214 -~~~~iyv~GG~~~~-~~~~~v~~yd~~------------------~~~W~~~~~---~p~~r~~~~~~~~--~~~i~v~  268 (308)
T 1zgk_A          214 -LHNCIYAAGGYDGQ-DQLNSVERYDVE------------------TETWTFVAP---MKHRRSALGITVH--QGRIYVL  268 (308)
T ss_dssp             -ETTEEEEECCBCSS-SBCCCEEEEETT------------------TTEEEECCC---CSSCCBSCEEEEE--TTEEEEE
T ss_pred             -ECCEEEEEeCCCCC-CccceEEEEeCC------------------CCcEEECCC---CCCCccceEEEEE--CCEEEEE
Confidence             79999999999864 347899999998                  789998864   8899999999888  7899999


Q ss_pred             cCccC
Q 016774          353 GGMVD  357 (383)
Q Consensus       353 GG~~~  357 (383)
                      ||...
T Consensus       269 GG~~~  273 (308)
T 1zgk_A          269 GGYDG  273 (308)
T ss_dssp             CCBCS
T ss_pred             cCcCC
Confidence            99843

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=6.4e-42  Score=314.81  Aligned_cols=276  Identities=17%  Similarity=0.166  Sum_probs=233.5

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEcccc-----CCCCCCCceEEEEeccCcccccceEEcCCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGC-----EGGRHLDDTWVAYVGNDFQGMLKWQKVNSG   88 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~-----~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~   88 (383)
                      ..||+.+.+|+...  .+.   |.+|.+|++++++++|||+||..     ......+++++|++..+     +|++++ .
T Consensus        16 ~~yd~~~~~W~~~~--~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-----~W~~~~-~   84 (315)
T 4asc_A           16 VAYDPAANECYCAS--LSS---QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS-----EWLGMP-P   84 (315)
T ss_dssp             EEEETTTTEEEEEE--CCC---CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT-----EEEECC-C
T ss_pred             EEECCCCCeEecCC--CCC---CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC-----eEEECC-C
Confidence            46799999998732  222   77999999999999999999962     12333456899998554     999987 4


Q ss_pred             CCCCCcceeEEEECCEEEEEcCcc--CCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEE
Q 016774           89 IPSGRFGHTCVVIGDCLVLFGGIN--DRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVI  166 (383)
Q Consensus        89 ~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v  166 (383)
                      +|.+|.+|+++.++++|||+||..  ......+++++||+       .+++|+++..   +|.+|..|+++..++ +||+
T Consensus        85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~-------~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv  153 (315)
T 4asc_A           85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDR-------LSFKWGESDP---LPYVVYGHTVLSHMD-LVYV  153 (315)
T ss_dssp             BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEET-------TTTEEEECCC---CSSCCBSCEEEEETT-EEEE
T ss_pred             CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECC-------CCCcEeECCC---CCCcccceeEEEECC-EEEE
Confidence            789999999999999999999976  33567899999999       6999999865   789999999999887 9999


Q ss_pred             EcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccc
Q 016774          167 HAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFK  246 (383)
Q Consensus       167 ~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~  246 (383)
                      +||.......++++++||+.++    +|++++  ++|.+|..|+++.+ +++||++||.. .....+++++||+++  .+
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~----~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~~~yd~~~--~~  223 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKF----EWKELA--PMQTARSLFGATVH-DGRIIVAAGVT-DTGLTSSAEVYSITD--NK  223 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTT----EEEECC--CCSSCCBSCEEEEE-TTEEEEEEEEC-SSSEEEEEEEEETTT--TE
T ss_pred             EeCCCCCCcccceEEEEeCCCC----eEEECC--CCCCchhceEEEEE-CCEEEEEeccC-CCCccceEEEEECCC--Ce
Confidence            9998656667899999999999    999998  78999999999999 59999999985 345688999999999  99


Q ss_pred             eEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC----C----CCCCcEEEEEcCCCcccccccccccccccc
Q 016774          247 WVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA----R----RRKDDFWVLDTKAIPFTSVQQSMLDSRGLL  318 (383)
Q Consensus       247 W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~----~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  318 (383)
                      |+.+        ..+|.+|.+|++++ .+++||++||.+..    +    ...+++++||++                  
T Consensus       224 W~~~--------~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~------------------  276 (315)
T 4asc_A          224 WAPF--------EAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEE------------------  276 (315)
T ss_dssp             EEEE--------CCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT------------------
T ss_pred             EEEC--------CCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCC------------------
Confidence            9999        46899999999887 79999999998642    1    246789999998                  


Q ss_pred             cccceeeccCCCCCCCccceeeeecCCCcEEEEEcCc
Q 016774          319 LNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM  355 (383)
Q Consensus       319 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~  355 (383)
                      +++|+.+     +|.+|..|+++++  ++++|++...
T Consensus       277 ~~~W~~~-----~~~~r~~~~~~~~--~~~l~v~~~~  306 (315)
T 4asc_A          277 EKKWEGV-----LREIAYAAGATFL--PVRLNVLRLT  306 (315)
T ss_dssp             TTEEEEE-----ESCSSCCSSCEEE--EEEECGGGSE
T ss_pred             CChhhhh-----ccCCcCccceEEe--CCEEEEEEeh
Confidence            7899988     5778999999888  8899999765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=7.8e-41  Score=306.24  Aligned_cols=263  Identities=16%  Similarity=0.162  Sum_probs=230.5

Q ss_pred             hccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCc
Q 016774           15 VTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRF   94 (383)
Q Consensus        15 ~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~   94 (383)
                      .|++.+.+|+.+...      |.+|.+|++++++++|||+||..  ....+++++|++..+     +|++++ .+|.+|.
T Consensus        28 ~~d~~~~~W~~~~~~------p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~-----~W~~~~-~~p~~r~   93 (306)
T 3ii7_A           28 YFNPKDYSWTDIRCP------FEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKD-----SWYSKL-GPPTPRD   93 (306)
T ss_dssp             EEETTTTEEEECCCC------SCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTT-----EEEEEE-CCSSCCB
T ss_pred             EecCCCCCEecCCCC------CcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCC-----eEEECC-CCCcccc
Confidence            578999999998643      88999999999999999999976  567889999999655     999987 4789999


Q ss_pred             ceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC
Q 016774           95 GHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG  174 (383)
Q Consensus        95 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~  174 (383)
                      +|+++.++++|||+||.+.....++++++||+       .+++|+++..   +|.+|..|+++..++ +||++||.....
T Consensus        94 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~-------~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~  162 (306)
T 3ii7_A           94 SLAACAAEGKIYTSGGSEVGNSALYLFECYDT-------RTESWHTKPS---MLTQRCSHGMVEANG-LIYVCGGSLGNN  162 (306)
T ss_dssp             SCEEEEETTEEEEECCBBTTBSCCCCEEEEET-------TTTEEEEECC---CSSCCBSCEEEEETT-EEEEECCEESCT
T ss_pred             ceeEEEECCEEEEECCCCCCCcEeeeEEEEeC-------CCCceEeCCC---CcCCcceeEEEEECC-EEEEECCCCCCC
Confidence            99999999999999998755667899999999       6999999865   789999999998877 999999986544


Q ss_pred             C---cccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEec
Q 016774          175 L---RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP  251 (383)
Q Consensus       175 ~---~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~  251 (383)
                      .   .++++++||+.++    +|++++  ++|.+|..|+++.+ +++||++||... ....+++++||+.+  ++|+.+ 
T Consensus       163 ~~~~~~~~~~~yd~~~~----~W~~~~--~~p~~r~~~~~~~~-~~~i~v~GG~~~-~~~~~~~~~yd~~~--~~W~~~-  231 (306)
T 3ii7_A          163 VSGRVLNSCEVYDPATE----TWTELC--PMIEARKNHGLVFV-KDKIFAVGGQNG-LGGLDNVEYYDIKL--NEWKMV-  231 (306)
T ss_dssp             TTCEECCCEEEEETTTT----EEEEEC--CCSSCCBSCEEEEE-TTEEEEECCEET-TEEBCCEEEEETTT--TEEEEC-
T ss_pred             CcccccceEEEeCCCCC----eEEECC--CccchhhcceEEEE-CCEEEEEeCCCC-CCCCceEEEeeCCC--CcEEEC-
Confidence            3   2899999999999    999998  78999999999999 699999999853 35688999999999  999999 


Q ss_pred             ccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCC
Q 016774          252 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYK  331 (383)
Q Consensus       252 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~  331 (383)
                             ..+|.+|.+|++++ .+++|||+||.+... ..+++++||++                  +.+|+.+..   +
T Consensus       232 -------~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~-~~~~~~~yd~~------------------~~~W~~~~~---~  281 (306)
T 3ii7_A          232 -------SPMPWKGVTVKCAA-VGSIVYVLAGFQGVG-RLGHILEYNTE------------------TDKWVANSK---V  281 (306)
T ss_dssp             -------CCCSCCBSCCEEEE-ETTEEEEEECBCSSS-BCCEEEEEETT------------------TTEEEEEEE---E
T ss_pred             -------CCCCCCccceeEEE-ECCEEEEEeCcCCCe-eeeeEEEEcCC------------------CCeEEeCCC---c
Confidence                   57899999999887 799999999997643 57899999998                  789999865   7


Q ss_pred             CCCccceeeeec
Q 016774          332 PNCRSFHRACPD  343 (383)
Q Consensus       332 p~~r~~~~~~~~  343 (383)
                      |.+|.+|+++++
T Consensus       282 ~~~r~~~~~~~~  293 (306)
T 3ii7_A          282 RAFPVTSCLICV  293 (306)
T ss_dssp             ECCSCTTCEEEE
T ss_pred             ccccceeEEEEE
Confidence            899999999877

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=3.2e-41  Score=310.54  Aligned_cols=275  Identities=16%  Similarity=0.175  Sum_probs=232.5

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCC-----CCCCCceEEEEeccCcccccceEEcCCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEG-----GRHLDDTWVAYVGNDFQGMLKWQKVNSG   88 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-----~~~~~~~~~~~~~~~~~~~~~W~~~~~~   88 (383)
                      ..|++.+.+|+.....  .   |.||.+|++++.+++|||+||....     ....+++++|+...+     +|++++ .
T Consensus        27 ~~yd~~~~~W~~~~~~--~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-----~W~~~~-~   95 (318)
T 2woz_A           27 VAYDPMENECYLTALA--E---QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-----EWVGLP-P   95 (318)
T ss_dssp             EEEETTTTEEEEEEEC--T---TSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT-----EEEECS-C
T ss_pred             EEECCCCCceecccCC--c---cCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC-----cEEECC-C
Confidence            5689999999985432  2   6799999999999999999995321     122345889998554     999997 4


Q ss_pred             CCCCCcceeEEEECCEEEEEcCccC-CCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEE
Q 016774           89 IPSGRFGHTCVVIGDCLVLFGGIND-RGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIH  167 (383)
Q Consensus        89 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~  167 (383)
                      +|.+|..|+++.++++|||+||... ....++++++||+       .+++|+++..   +|.+|.+|+++..++ +||++
T Consensus        96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~-------~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~  164 (318)
T 2woz_A           96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDP-------VAAKWSEVKN---LPIKVYGHNVISHNG-MIYCL  164 (318)
T ss_dssp             BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEET-------TTTEEEEECC---CSSCEESCEEEEETT-EEEEE
T ss_pred             CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeC-------CCCCEeECCC---CCCcccccEEEEECC-EEEEE
Confidence            7889999999999999999999863 4556889999999       6999999875   789999999998777 99999


Q ss_pred             cccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccce
Q 016774          168 AGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKW  247 (383)
Q Consensus       168 GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W  247 (383)
                      ||.......++++++||+.++    +|++++  ++|.+|..|+++.+ +++|||+||... ....+++++||+++  ++|
T Consensus       165 GG~~~~~~~~~~~~~yd~~~~----~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~-~~~~~~~~~yd~~~--~~W  234 (318)
T 2woz_A          165 GGKTDDKKCTNRVFIYNPKKG----DWKDLA--PMKTPRSMFGVAIH-KGKIVIAGGVTE-DGLSASVEAFDLKT--NKW  234 (318)
T ss_dssp             CCEESSSCBCCCEEEEETTTT----EEEEEC--CCSSCCBSCEEEEE-TTEEEEEEEEET-TEEEEEEEEEETTT--CCE
T ss_pred             cCCCCCCCccceEEEEcCCCC----EEEECC--CCCCCcccceEEEE-CCEEEEEcCcCC-CCccceEEEEECCC--CeE
Confidence            998666667899999999999    999998  78899999999998 599999999863 44678999999999  999


Q ss_pred             EEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC--------CCCCCcEEEEEcCCCccccccccccccccccc
Q 016774          248 VQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA--------RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLL  319 (383)
Q Consensus       248 ~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  319 (383)
                      +++        ..+|.+|.+|++++ .+++||++||.+..        ....+++|+||++                  +
T Consensus       235 ~~~--------~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~------------------~  287 (318)
T 2woz_A          235 EVM--------TEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD------------------K  287 (318)
T ss_dssp             EEC--------CCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETT------------------T
T ss_pred             EEC--------CCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCC------------------C
Confidence            999        46899999999887 89999999998753        1347899999998                  7


Q ss_pred             ccceeeccCCCCCCCccceeeeecCCCcEEEEEcC
Q 016774          320 NMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGG  354 (383)
Q Consensus       320 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG  354 (383)
                      .+|+++     +|.+|++|+++++  +++|||+..
T Consensus       288 ~~W~~~-----~~~~r~~~~~~~~--~~~iyi~~~  315 (318)
T 2woz_A          288 KEWAGM-----LKEIRYASGASCL--ATRLNLFKL  315 (318)
T ss_dssp             TEEEEE-----ESCCGGGTTCEEE--EEEEEGGGC
T ss_pred             CEehhh-----cccccccccceee--CCEEEEEEe
Confidence            899988     5889999999988  889998853

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=303.12  Aligned_cols=265  Identities=15%  Similarity=0.225  Sum_probs=228.2

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGR   93 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r   93 (383)
                      ..|++.+.+|+.+..   .   |.+|.+|++++++++|||+||... ....+++++|++..+     +|++++ .+|.+|
T Consensus        33 ~~~d~~~~~W~~~~~---~---p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~~~-----~W~~~~-~~p~~r   99 (302)
T 2xn4_A           33 ECYDFKEERWHQVAE---L---PSRRCRAGMVYMAGLVFAVGGFNG-SLRVRTVDSYDPVKD-----QWTSVA-NMRDRR   99 (302)
T ss_dssp             EEEETTTTEEEEECC---C---SSCCBSCEEEEETTEEEEESCBCS-SSBCCCEEEEETTTT-----EEEEEC-CCSSCC
T ss_pred             EEEcCcCCcEeEccc---C---CcccccceEEEECCEEEEEeCcCC-CccccceEEECCCCC-----ceeeCC-CCCccc
Confidence            357888999999853   3   889999999999999999999643 456789999999555     999997 478899


Q ss_pred             cceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCC
Q 016774           94 FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLY  173 (383)
Q Consensus        94 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~  173 (383)
                      ..|+++.++++||++||... ...++++++||+       .+++|+++.+   +|.+|..|+++..++ +||++||....
T Consensus       100 ~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~-------~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~  167 (302)
T 2xn4_A          100 STLGAAVLNGLLYAVGGFDG-STGLSSVEAYNI-------KSNEWFHVAP---MNTRRSSVGVGVVGG-LLYAVGGYDVA  167 (302)
T ss_dssp             BSCEEEEETTEEEEEEEECS-SCEEEEEEEEET-------TTTEEEEECC---CSSCCBSCEEEEETT-EEEEECCEETT
T ss_pred             cceEEEEECCEEEEEcCCCC-CccCceEEEEeC-------CCCeEeecCC---CCCcccCceEEEECC-EEEEEeCCCCC
Confidence            99999999999999999864 456789999999       6999999865   788999999998877 99999998644


Q ss_pred             C-CcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecc
Q 016774          174 G-LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPY  252 (383)
Q Consensus       174 ~-~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~  252 (383)
                      . ..++++++||+.++    +|++++  ++|.+|..|+++.+ +++||++||.. .....+++++||+++  ++|+.+  
T Consensus       168 ~~~~~~~~~~yd~~~~----~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~~~yd~~~--~~W~~~--  235 (302)
T 2xn4_A          168 SRQCLSTVECYNATTN----EWTYIA--EMSTRRSGAGVGVL-NNLLYAVGGHD-GPLVRKSVEVYDPTT--NAWRQV--  235 (302)
T ss_dssp             TTEECCCEEEEETTTT----EEEEEC--CCSSCCBSCEEEEE-TTEEEEECCBS-SSSBCCCEEEEETTT--TEEEEE--
T ss_pred             CCccccEEEEEeCCCC----cEEECC--CCccccccccEEEE-CCEEEEECCCC-CCcccceEEEEeCCC--CCEeeC--
Confidence            3 34789999999999    999997  78899999999999 59999999985 345678999999999  999999  


Q ss_pred             cccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCC
Q 016774          253 ELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKP  332 (383)
Q Consensus       253 ~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p  332 (383)
                            ..+|.+|.+|++++ .+++||++||.+.. ...+++++||++                  +++|+.+..  .+|
T Consensus       236 ------~~~~~~r~~~~~~~-~~~~i~v~GG~~~~-~~~~~v~~yd~~------------------~~~W~~~~~--~~~  287 (302)
T 2xn4_A          236 ------ADMNMCRRNAGVCA-VNGLLYVVGGDDGS-CNLASVEYYNPT------------------TDKWTVVSS--CMS  287 (302)
T ss_dssp             ------CCCSSCCBSCEEEE-ETTEEEEECCBCSS-SBCCCEEEEETT------------------TTEEEECSS--CCS
T ss_pred             ------CCCCCccccCeEEE-ECCEEEEECCcCCC-cccccEEEEcCC------------------CCeEEECCc--ccC
Confidence                  46889999998886 79999999998764 347899999998                  789998852  478


Q ss_pred             CCccceeeeec
Q 016774          333 NCRSFHRACPD  343 (383)
Q Consensus       333 ~~r~~~~~~~~  343 (383)
                      .+|..|+++++
T Consensus       288 ~~r~~~~~~~~  298 (302)
T 2xn4_A          288 TGRSYAGVTVI  298 (302)
T ss_dssp             SCCBSCEEEEE
T ss_pred             cccccceEEEe
Confidence            99999999887

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.8e-40  Score=304.13  Aligned_cols=264  Identities=19%  Similarity=0.209  Sum_probs=228.9

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEcccc---CCCCCCCceEEEEeccCcccccceEEcCCCCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGC---EGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIP   90 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p   90 (383)
                      ..|++.+.+|+.+..   .   |.+|.+|++++++++|||+||..   ......+++++|++.++     +|++++ .+|
T Consensus        42 ~~~d~~~~~W~~~~~---~---p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~-----~W~~~~-~~p  109 (308)
T 1zgk_A           42 EAYNPSNGTWLRLAD---L---QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-----QWSPCA-PMS  109 (308)
T ss_dssp             EEEETTTTEEEECCC---C---SSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT-----EEEECC-CCS
T ss_pred             EEEcCCCCeEeECCC---C---CcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCC-----eEeECC-CCC
Confidence            457899999999953   3   88999999999999999999964   44456789999999555     999997 478


Q ss_pred             CCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEccc
Q 016774           91 SGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGI  170 (383)
Q Consensus        91 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~  170 (383)
                      .+|..|+++.++++||++||... ...++++++||+       .+++|+++..   +|.+|..|+++..++ +||++||.
T Consensus       110 ~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~-------~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~  177 (308)
T 1zgk_A          110 VPRNRIGVGVIDGHIYAVGGSHG-CIHHNSVERYEP-------ERDEWHLVAP---MLTRRIGVGVAVLNR-LLYAVGGF  177 (308)
T ss_dssp             SCCBTCEEEEETTEEEEECCEET-TEECCCEEEEET-------TTTEEEECCC---CSSCCBSCEEEEETT-EEEEECCB
T ss_pred             cCccccEEEEECCEEEEEcCCCC-CcccccEEEECC-------CCCeEeECCC---CCccccceEEEEECC-EEEEEeCC
Confidence            89999999999999999999865 345789999999       6999999875   789999999999876 99999998


Q ss_pred             CCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774          171 GLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI  250 (383)
Q Consensus       171 ~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i  250 (383)
                      +... .++++++||+.++    +|++++  ++|.+|..|+++.+ +++||++||.. .....+++++||+.+  ++|+++
T Consensus       178 ~~~~-~~~~~~~yd~~~~----~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~v~~yd~~~--~~W~~~  246 (308)
T 1zgk_A          178 DGTN-RLNSAECYYPERN----EWRMIT--AMNTIRSGAGVCVL-HNCIYAAGGYD-GQDQLNSVERYDVET--ETWTFV  246 (308)
T ss_dssp             CSSC-BCCCEEEEETTTT----EEEECC--CCSSCCBSCEEEEE-TTEEEEECCBC-SSSBCCCEEEEETTT--TEEEEC
T ss_pred             CCCC-cCceEEEEeCCCC----eEeeCC--CCCCccccceEEEE-CCEEEEEeCCC-CCCccceEEEEeCCC--CcEEEC
Confidence            6543 5899999999999    999997  78899999999999 69999999996 445688999999999  999999


Q ss_pred             cccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCC
Q 016774          251 PYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGY  330 (383)
Q Consensus       251 ~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  330 (383)
                              ..+|.+|..|++++ .+++|||+||.+.. ...+++++||++                  +++|+.+..   
T Consensus       247 --------~~~p~~r~~~~~~~-~~~~i~v~GG~~~~-~~~~~v~~yd~~------------------~~~W~~~~~---  295 (308)
T 1zgk_A          247 --------APMKHRRSALGITV-HQGRIYVLGGYDGH-TFLDSVECYDPD------------------TDTWSEVTR---  295 (308)
T ss_dssp             --------CCCSSCCBSCEEEE-ETTEEEEECCBCSS-CBCCEEEEEETT------------------TTEEEEEEE---
T ss_pred             --------CCCCCCccceEEEE-ECCEEEEEcCcCCC-cccceEEEEcCC------------------CCEEeecCC---
Confidence                    47899999999887 79999999998763 457899999998                  789999855   


Q ss_pred             CCCCccceeeeec
Q 016774          331 KPNCRSFHRACPD  343 (383)
Q Consensus       331 ~p~~r~~~~~~~~  343 (383)
                      +|.+|.+|+++++
T Consensus       296 ~p~~r~~~~~~~l  308 (308)
T 1zgk_A          296 MTSGRSGVGVAVT  308 (308)
T ss_dssp             CSSCCBSCEEEEC
T ss_pred             CCCCcccceeEeC
Confidence            8999999998764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=4e-40  Score=308.06  Aligned_cols=279  Identities=18%  Similarity=0.198  Sum_probs=216.3

Q ss_pred             CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCC-CCCcceeEEEECCEEEEEcCc-c-
Q 016774           36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIP-SGRFGHTCVVIGDCLVLFGGI-N-  112 (383)
Q Consensus        36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~-~-  112 (383)
                      |.+|.+|++++++++|||+||..     .+++|+|++..   .+.+|++++. +| .+|.+|++++++++|||+||. . 
T Consensus         7 P~~r~~~~~~~~~~~iyv~GG~~-----~~~~~~~d~~~---~~~~W~~~~~-~p~~~R~~~~~~~~~~~lyv~GG~~~~   77 (357)
T 2uvk_A            7 PVPFKSGTGAIDNDTVYIGLGSA-----GTAWYKLDTQA---KDKKWTALAA-FPGGPRDQATSAFIDGNLYVFGGIGKN   77 (357)
T ss_dssp             SSCCCSCEEEEETTEEEEECGGG-----TTCEEEEETTS---SSCCEEECCC-CTTCCCBSCEEEEETTEEEEECCEEEC
T ss_pred             CccccceEEEEECCEEEEEeCcC-----CCeEEEEcccc---CCCCeeECCC-CCCCcCccceEEEECCEEEEEcCCCCC
Confidence            88999999999999999999964     35899999853   1249999975 66 799999999999999999998 2 


Q ss_pred             --CCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC----------------
Q 016774          113 --DRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG----------------  174 (383)
Q Consensus       113 --~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~----------------  174 (383)
                        .....++++++||+       .+++|+++....  |.+|.+|+++..++ +|||+||.+...                
T Consensus        78 ~~~~~~~~~~v~~yd~-------~~~~W~~~~~~~--p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~  147 (357)
T 2uvk_A           78 SEGLTQVFNDVHKYNP-------KTNSWVKLMSHA--PMGMAGHVTFVHNG-KAYVTGGVNQNIFNGYFEDLNEAGKDST  147 (357)
T ss_dssp             TTSCEEECCCEEEEET-------TTTEEEECSCCC--SSCCSSEEEEEETT-EEEEEECCCHHHHHHHHHHHHHHTTCHH
T ss_pred             CCccceeeccEEEEeC-------CCCcEEECCCCC--CcccccceEEEECC-EEEEEeCcCCCcCcccccchhhcCCccc
Confidence              22345899999999       699999998643  69999999988766 999999974321                


Q ss_pred             -----------------CcccceEEEeccCCcccCceEEcccCCCCCCCCC-ceEEEEcCCEEEEEcccCCCCCccccEE
Q 016774          175 -----------------LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSG-HSLTRIGGNRTVLFGGRGVGYEVLNDVW  236 (383)
Q Consensus       175 -----------------~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~-~~~~~~~~~~i~v~GG~~~~~~~~~~v~  236 (383)
                                       ..++++++||+.++    +|+.+.  ++|.+|.. |+++.+ +++|||+||........++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~----~W~~~~--~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~  220 (357)
T 2uvk_A          148 AIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ----QWSYAG--ESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVF  220 (357)
T ss_dssp             HHHHHHHHHHSSCGGGGCCCCEEEEEETTTT----EEEEEE--ECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEE
T ss_pred             chhhhhhhhccccccccCCcccEEEEeCCCC----cEEECC--CCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceE
Confidence                             23589999999999    999997  66766554 888888 699999999865555678899


Q ss_pred             EEEc--ccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC----------------CCCCCcEEEEE
Q 016774          237 FLDV--YEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA----------------RRRKDDFWVLD  298 (383)
Q Consensus       237 ~~~~--~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~----------------~~~~~~~~~~d  298 (383)
                      .||+  ++  .+|+++.      ....|.+|.+|++++ .+++|||+||.+..                ....+++++||
T Consensus       221 ~~d~d~~~--~~W~~~~------~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd  291 (357)
T 2uvk_A          221 ELDFTGNN--LKWNKLA------PVSSPDGVAGGFAGI-SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL  291 (357)
T ss_dssp             EEECC-----CEEEECC------CSSTTTCCBSCEEEE-ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE
T ss_pred             EEEecCCC--CcEEecC------CCCCCcccccceEEE-ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEe
Confidence            9987  77  9999994      122344456777776 89999999997532                12246789999


Q ss_pred             cCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEEE
Q 016774          299 TKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVE  378 (383)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~  378 (383)
                      ++                  +.+|+.+..   +|.+|.+|+++.+  +++|||+||...+..         ..+|++.++
T Consensus       292 ~~------------------~~~W~~~~~---~p~~r~~~~~~~~--~~~i~v~GG~~~~~~---------~~~~v~~l~  339 (357)
T 2uvk_A          292 WH------------------NGKWDKSGE---LSQGRAYGVSLPW--NNSLLIIGGETAGGK---------AVTDSVLIT  339 (357)
T ss_dssp             CC---------------------CEEEEE---CSSCCBSSEEEEE--TTEEEEEEEECGGGC---------EEEEEEEEE
T ss_pred             cC------------------CCceeeCCC---CCCCcccceeEEe--CCEEEEEeeeCCCCC---------EeeeEEEEE
Confidence            98                  789999855   8999999999887  889999999854331         235677666


Q ss_pred             eec
Q 016774          379 LVP  381 (383)
Q Consensus       379 ~~~  381 (383)
                      ++.
T Consensus       340 ~~~  342 (357)
T 2uvk_A          340 VKD  342 (357)
T ss_dssp             C-C
T ss_pred             EcC
Confidence            654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=298.13  Aligned_cols=245  Identities=18%  Similarity=0.254  Sum_probs=214.2

Q ss_pred             CCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecc
Q 016774           48 SNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIA  127 (383)
Q Consensus        48 ~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~  127 (383)
                      .+.||++||...    .++++.|++..+     +|+++. .+|.+|.+|+++.++++|||+||..  ...++++++||+ 
T Consensus        11 ~~~l~~~GG~~~----~~~~~~~d~~~~-----~W~~~~-~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~-   77 (306)
T 3ii7_A           11 HDYRIALFGGSQ----PQSCRYFNPKDY-----SWTDIR-CPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNV-   77 (306)
T ss_dssp             CCEEEEEECCSS----TTSEEEEETTTT-----EEEECC-CCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEET-
T ss_pred             cceEEEEeCCCC----CceEEEecCCCC-----CEecCC-CCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeC-
Confidence            378999999644    789999999655     999997 4788999999999999999999986  556899999999 


Q ss_pred             cccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCC
Q 016774          128 CHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARS  207 (383)
Q Consensus       128 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~  207 (383)
                            .+++|+++..   +|.+|..|+++.+++ +||++||.+.....++++++||+.++    +|++++  ++|.+|.
T Consensus        78 ------~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~~~----~W~~~~--~~p~~r~  141 (306)
T 3ii7_A           78 ------VKDSWYSKLG---PPTPRDSLAACAAEG-KIYTSGGSEVGNSALYLFECYDTRTE----SWHTKP--SMLTQRC  141 (306)
T ss_dssp             ------TTTEEEEEEC---CSSCCBSCEEEEETT-EEEEECCBBTTBSCCCCEEEEETTTT----EEEEEC--CCSSCCB
T ss_pred             ------CCCeEEECCC---CCccccceeEEEECC-EEEEECCCCCCCcEeeeEEEEeCCCC----ceEeCC--CCcCCcc
Confidence                  6999999865   789999999999877 99999998655567899999999999    999997  7899999


Q ss_pred             CceEEEEcCCEEEEEcccCCCCC---ccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCc
Q 016774          208 GHSLTRIGGNRTVLFGGRGVGYE---VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGE  284 (383)
Q Consensus       208 ~~~~~~~~~~~i~v~GG~~~~~~---~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~  284 (383)
                      .|+++.+ +++||++||......   ..+++++||+.+  .+|+++        ..+|.+|.+|++++ .+++||++||.
T Consensus       142 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~--~~W~~~--------~~~p~~r~~~~~~~-~~~~i~v~GG~  209 (306)
T 3ii7_A          142 SHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT--ETWTEL--------CPMIEARKNHGLVF-VKDKIFAVGGQ  209 (306)
T ss_dssp             SCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTT--TEEEEE--------CCCSSCCBSCEEEE-ETTEEEEECCE
T ss_pred             eeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCC--CeEEEC--------CCccchhhcceEEE-ECCEEEEEeCC
Confidence            9999998 599999999854332   388999999999  999999        46899999999987 79999999998


Q ss_pred             CCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774          285 DSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  357 (383)
Q Consensus       285 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~  357 (383)
                      +.. ...+++++||++                  +.+|+.+..   +|.+|.+|+++++  +++|||+||...
T Consensus       210 ~~~-~~~~~~~~yd~~------------------~~~W~~~~~---~p~~r~~~~~~~~--~~~i~v~GG~~~  258 (306)
T 3ii7_A          210 NGL-GGLDNVEYYDIK------------------LNEWKMVSP---MPWKGVTVKCAAV--GSIVYVLAGFQG  258 (306)
T ss_dssp             ETT-EEBCCEEEEETT------------------TTEEEECCC---CSCCBSCCEEEEE--TTEEEEEECBCS
T ss_pred             CCC-CCCceEEEeeCC------------------CCcEEECCC---CCCCccceeEEEE--CCEEEEEeCcCC
Confidence            765 447899999998                  788998854   8899999999888  889999999854

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=295.73  Aligned_cols=263  Identities=17%  Similarity=0.233  Sum_probs=227.8

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccc---eEEcCCCCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLK---WQKVNSGIP   90 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~---W~~~~~~~p   90 (383)
                      ..|++.+.+|+.+...      |.+|.+|++++++++|||+||.. .....+++++|++..+     +   |+++. .+|
T Consensus        34 ~~~d~~~~~W~~~~~~------p~~r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~d~~~~-----~~~~W~~~~-~~p  100 (301)
T 2vpj_A           34 EKYDPKTQEWSFLPSI------TRKRRYVASVSLHDRIYVIGGYD-GRSRLSSVECLDYTAD-----EDGVWYSVA-PMN  100 (301)
T ss_dssp             EEEETTTTEEEECCCC------SSCCBSCEEEEETTEEEEECCBC-SSCBCCCEEEEETTCC-----TTCCCEEEC-CCS
T ss_pred             EEEcCCCCeEEeCCCC------ChhhccccEEEECCEEEEEcCCC-CCccCceEEEEECCCC-----CCCeeEECC-CCC
Confidence            3568899999998743      78999999999999999999965 4567889999999655     7   99996 478


Q ss_pred             CCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEccc
Q 016774           91 SGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGI  170 (383)
Q Consensus        91 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~  170 (383)
                      .+|..|+++.++++||++||... ...++++++||+       .+++|+++..   +|.+|..|+++..++ +||++||.
T Consensus       101 ~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~-------~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~  168 (301)
T 2vpj_A          101 VRRGLAGATTLGDMIYVSGGFDG-SRRHTSMERYDP-------NIDQWSMLGD---MQTAREGAGLVVASG-VIYCLGGY  168 (301)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCS-SCBCCEEEEEET-------TTTEEEEEEE---CSSCCBSCEEEEETT-EEEEECCB
T ss_pred             CCccceeEEEECCEEEEEcccCC-CcccceEEEEcC-------CCCeEEECCC---CCCCcccceEEEECC-EEEEECCC
Confidence            89999999999999999999864 445789999999       6999999865   789999999998876 99999998


Q ss_pred             CCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774          171 GLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI  250 (383)
Q Consensus       171 ~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i  250 (383)
                      +.. ..++++++||+.++    +|++++  ++|.+|..|+++.+ +++||++||.. .....+++++||+++  .+|+++
T Consensus       169 ~~~-~~~~~~~~~d~~~~----~W~~~~--~~p~~r~~~~~~~~-~~~i~v~GG~~-~~~~~~~v~~yd~~~--~~W~~~  237 (301)
T 2vpj_A          169 DGL-NILNSVEKYDPHTG----HWTNVT--PMATKRSGAGVALL-NDHIYVVGGFD-GTAHLSSVEAYNIRT--DSWTTV  237 (301)
T ss_dssp             CSS-CBCCCEEEEETTTT----EEEEEC--CCSSCCBSCEEEEE-TTEEEEECCBC-SSSBCCCEEEEETTT--TEEEEE
T ss_pred             CCC-cccceEEEEeCCCC----cEEeCC--CCCcccccceEEEE-CCEEEEEeCCC-CCcccceEEEEeCCC--CcEEEC
Confidence            544 36899999999999    999997  78999999999999 59999999986 344578999999999  999999


Q ss_pred             cccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCC
Q 016774          251 PYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGY  330 (383)
Q Consensus       251 ~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  330 (383)
                              ..+|.+|..|++++ .+++||++||.+.. ...+++++||++                  +++|+.+..   
T Consensus       238 --------~~~p~~r~~~~~~~-~~~~i~v~GG~~~~-~~~~~v~~yd~~------------------~~~W~~~~~---  286 (301)
T 2vpj_A          238 --------TSMTTPRCYVGATV-LRGRLYAIAGYDGN-SLLSSIECYDPI------------------IDSWEVVTS---  286 (301)
T ss_dssp             --------CCCSSCCBSCEEEE-ETTEEEEECCBCSS-SBEEEEEEEETT------------------TTEEEEEEE---
T ss_pred             --------CCCCCcccceeEEE-ECCEEEEEcCcCCC-cccccEEEEcCC------------------CCeEEEcCC---
Confidence                    46899999999887 79999999998764 346889999998                  789999865   


Q ss_pred             CCCCccceeeeec
Q 016774          331 KPNCRSFHRACPD  343 (383)
Q Consensus       331 ~p~~r~~~~~~~~  343 (383)
                      +|.+|..|+++++
T Consensus       287 ~~~~r~~~~~~~~  299 (301)
T 2vpj_A          287 MGTQRCDAGVCVL  299 (301)
T ss_dssp             EEEEEESCEEEEE
T ss_pred             CCcccccceEEEe
Confidence            8999999999876

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.9e-39  Score=293.21  Aligned_cols=252  Identities=20%  Similarity=0.323  Sum_probs=214.1

Q ss_pred             ceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCcccee
Q 016774           43 SLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTW  122 (383)
Q Consensus        43 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  122 (383)
                      ..+.+++.||++||...  ...+++++|++..+     +|+++. .+|.+|.+|+++.++++|||+||... ....++++
T Consensus        10 ~~~~~~~~i~v~GG~~~--~~~~~~~~~d~~~~-----~W~~~~-~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~   80 (302)
T 2xn4_A           10 TPMNLPKLMVVVGGQAP--KAIRSVECYDFKEE-----RWHQVA-ELPSRRCRAGMVYMAGLVFAVGGFNG-SLRVRTVD   80 (302)
T ss_dssp             -----CEEEEEECCBSS--SBCCCEEEEETTTT-----EEEEEC-CCSSCCBSCEEEEETTEEEEESCBCS-SSBCCCEE
T ss_pred             cccCCCCEEEEECCCCC--CCCCcEEEEcCcCC-----cEeEcc-cCCcccccceEEEECCEEEEEeCcCC-CccccceE
Confidence            34456889999999643  46788999999655     999996 57889999999999999999999864 35678999


Q ss_pred             eeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCC
Q 016774          123 IGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPS  202 (383)
Q Consensus       123 ~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~  202 (383)
                      +||+       .+.+|+++..   +|.+|..|+++.+++ +||++||.... ..++++++||+.++    +|++++  ++
T Consensus        81 ~~d~-------~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~-~~~~~~~~~d~~~~----~W~~~~--~~  142 (302)
T 2xn4_A           81 SYDP-------VKDQWTSVAN---MRDRRSTLGAAVLNG-LLYAVGGFDGS-TGLSSVEAYNIKSN----EWFHVA--PM  142 (302)
T ss_dssp             EEET-------TTTEEEEECC---CSSCCBSCEEEEETT-EEEEEEEECSS-CEEEEEEEEETTTT----EEEEEC--CC
T ss_pred             EECC-------CCCceeeCCC---CCccccceEEEEECC-EEEEEcCCCCC-ccCceEEEEeCCCC----eEeecC--CC
Confidence            9999       6999999875   789999999999877 99999998543 46889999999999    999998  78


Q ss_pred             CCCCCCceEEEEcCCEEEEEcccCCCC-CccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEE
Q 016774          203 PPARSGHSLTRIGGNRTVLFGGRGVGY-EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIY  281 (383)
Q Consensus       203 p~~r~~~~~~~~~~~~i~v~GG~~~~~-~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~  281 (383)
                      |.+|..|+++.+ +++||++||..... ...+++++||+.+  ++|+.+        ..+|.+|.+|++++ .+++||++
T Consensus       143 p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~--------~~~p~~r~~~~~~~-~~~~iyv~  210 (302)
T 2xn4_A          143 NTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATT--NEWTYI--------AEMSTRRSGAGVGV-LNNLLYAV  210 (302)
T ss_dssp             SSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTT--TEEEEE--------CCCSSCCBSCEEEE-ETTEEEEE
T ss_pred             CCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCC--CcEEEC--------CCCccccccccEEE-ECCEEEEE
Confidence            899999999999 59999999985433 4578999999999  999999        46889999999887 79999999


Q ss_pred             cCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774          282 GGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  357 (383)
Q Consensus       282 GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~  357 (383)
                      ||.+.. ...+++++||++                  +++|+.+..   +|.+|..|+++..  +++|||+||...
T Consensus       211 GG~~~~-~~~~~~~~yd~~------------------~~~W~~~~~---~~~~r~~~~~~~~--~~~i~v~GG~~~  262 (302)
T 2xn4_A          211 GGHDGP-LVRKSVEVYDPT------------------TNAWRQVAD---MNMCRRNAGVCAV--NGLLYVVGGDDG  262 (302)
T ss_dssp             CCBSSS-SBCCCEEEEETT------------------TTEEEEECC---CSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             CCCCCC-cccceEEEEeCC------------------CCCEeeCCC---CCCccccCeEEEE--CCEEEEECCcCC
Confidence            998764 347899999998                  789999865   7889999998887  789999999853

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=6.3e-39  Score=292.82  Aligned_cols=250  Identities=18%  Similarity=0.243  Sum_probs=216.2

Q ss_pred             eeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeee
Q 016774           46 FVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQ  125 (383)
Q Consensus        46 ~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d  125 (383)
                      .++++||++||........++++.|++..+     +|++++ .+|.+|.+|+++.++++||++||... ....+++++||
T Consensus        12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~-----~W~~~~-~~p~~r~~~~~~~~~~~l~v~GG~~~-~~~~~~~~~~d   84 (301)
T 2vpj_A           12 GANEVLLVVGGFGSQQSPIDVVEKYDPKTQ-----EWSFLP-SITRKRRYVASVSLHDRIYVIGGYDG-RSRLSSVECLD   84 (301)
T ss_dssp             -CCEEEEEECCEETTTEECCCEEEEETTTT-----EEEECC-CCSSCCBSCEEEEETTEEEEECCBCS-SCBCCCEEEEE
T ss_pred             cCCCEEEEEeCccCCCcceeEEEEEcCCCC-----eEEeCC-CCChhhccccEEEECCEEEEEcCCCC-CccCceEEEEE
Confidence            368899999995555567889999999555     999997 47889999999999999999999863 45688999999


Q ss_pred             cccccCCccccc---EEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCC
Q 016774          126 IACHENLGITLS---WRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPS  202 (383)
Q Consensus       126 ~~~~~~~~~~~~---W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~  202 (383)
                      +       .+.+   |+++..   +|.+|..|+++..++ +||++||.... ..++++++||+.++    +|++++  ++
T Consensus        85 ~-------~~~~~~~W~~~~~---~p~~r~~~~~~~~~~-~lyv~GG~~~~-~~~~~~~~~d~~~~----~W~~~~--~~  146 (301)
T 2vpj_A           85 Y-------TADEDGVWYSVAP---MNVRRGLAGATTLGD-MIYVSGGFDGS-RRHTSMERYDPNID----QWSMLG--DM  146 (301)
T ss_dssp             T-------TCCTTCCCEEECC---CSSCCBSCEEEEETT-EEEEECCBCSS-CBCCEEEEEETTTT----EEEEEE--EC
T ss_pred             C-------CCCCCCeeEECCC---CCCCccceeEEEECC-EEEEEcccCCC-cccceEEEEcCCCC----eEEECC--CC
Confidence            9       5888   999865   789999999999876 99999998643 45889999999999    999998  77


Q ss_pred             CCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEc
Q 016774          203 PPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYG  282 (383)
Q Consensus       203 p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~G  282 (383)
                      |.+|..|+++.+ +++||++||.. .....+++++||+.+  .+|+++        ..+|.+|..|++++ .+++||++|
T Consensus       147 p~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~~~~d~~~--~~W~~~--------~~~p~~r~~~~~~~-~~~~i~v~G  213 (301)
T 2vpj_A          147 QTAREGAGLVVA-SGVIYCLGGYD-GLNILNSVEKYDPHT--GHWTNV--------TPMATKRSGAGVAL-LNDHIYVVG  213 (301)
T ss_dssp             SSCCBSCEEEEE-TTEEEEECCBC-SSCBCCCEEEEETTT--TEEEEE--------CCCSSCCBSCEEEE-ETTEEEEEC
T ss_pred             CCCcccceEEEE-CCEEEEECCCC-CCcccceEEEEeCCC--CcEEeC--------CCCCcccccceEEE-ECCEEEEEe
Confidence            899999999999 69999999985 345788999999999  999999        46899999999887 799999999


Q ss_pred             CcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774          283 GEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  357 (383)
Q Consensus       283 G~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~  357 (383)
                      |.+... ..+++++||++                  +.+|+.+..   +|.+|..|+++.+  +++|||+||...
T Consensus       214 G~~~~~-~~~~v~~yd~~------------------~~~W~~~~~---~p~~r~~~~~~~~--~~~i~v~GG~~~  264 (301)
T 2vpj_A          214 GFDGTA-HLSSVEAYNIR------------------TDSWTTVTS---MTTPRCYVGATVL--RGRLYAIAGYDG  264 (301)
T ss_dssp             CBCSSS-BCCCEEEEETT------------------TTEEEEECC---CSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             CCCCCc-ccceEEEEeCC------------------CCcEEECCC---CCCcccceeEEEE--CCEEEEEcCcCC
Confidence            998643 37899999998                  788998854   8899999999888  789999999854

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=5.3e-39  Score=295.33  Aligned_cols=267  Identities=15%  Similarity=0.156  Sum_probs=217.9

Q ss_pred             eCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCcc-----CCCCCccce
Q 016774           47 VSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGIN-----DRGNRHNDT  121 (383)
Q Consensus        47 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~-----~~~~~~~~~  121 (383)
                      +++.||++||        ++++.||+..+     +|+......|.+|.+|+++.++++|||+||..     ......+++
T Consensus         3 ~~~~l~~~GG--------~~~~~yd~~~~-----~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~   69 (315)
T 4asc_A            3 LQDLIFMISE--------EGAVAYDPAAN-----ECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYF   69 (315)
T ss_dssp             CEEEEEEEET--------TEEEEEETTTT-----EEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEE
T ss_pred             cceEEEEEcC--------CceEEECCCCC-----eEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccce
Confidence            4568999999        58999999655     99874433467999999999999999999963     222335679


Q ss_pred             eeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCC--CCCcccceEEEeccCCcccCceEEccc
Q 016774          122 WIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGL--YGLRLGDTWVLELSENFCFGSWQQLVT  199 (383)
Q Consensus       122 ~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~--~~~~~~~~~~~d~~~~~~~~~W~~~~~  199 (383)
                      ++||+       .+.+|+++..   +|.+|..|+++.+++ +||++||...  ....++++++||+.++    +|++++ 
T Consensus        70 ~~~d~-------~~~~W~~~~~---~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~----~W~~~~-  133 (315)
T 4asc_A           70 LQFDH-------LDSEWLGMPP---LPSPRCLFGLGEALN-SIYVVGGREIKDGERCLDSVMCYDRLSF----KWGESD-  133 (315)
T ss_dssp             EEEET-------TTTEEEECCC---BSSCEESCEEEEETT-EEEEECCEESSTTCCBCCCEEEEETTTT----EEEECC-
T ss_pred             EEecC-------CCCeEEECCC---CCcchhceeEEEECC-EEEEEeCCcCCCCCcccceEEEECCCCC----cEeECC-
Confidence            99999       6999999865   789999999999977 9999999752  3467899999999999    999998 


Q ss_pred             CCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEE
Q 016774          200 HPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVL  279 (383)
Q Consensus       200 ~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~  279 (383)
                       ++|.+|..|+++.+ +++||++||........+++++||+.+  ++|+++        ..+|.+|..|++++ .+++||
T Consensus       134 -~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~--------~~~p~~r~~~~~~~-~~~~iy  200 (315)
T 4asc_A          134 -PLPYVVYGHTVLSH-MDLVYVIGGKGSDRKCLNKMCVYDPKK--FEWKEL--------APMQTARSLFGATV-HDGRII  200 (315)
T ss_dssp             -CCSSCCBSCEEEEE-TTEEEEECCBCTTSCBCCCEEEEETTT--TEEEEC--------CCCSSCCBSCEEEE-ETTEEE
T ss_pred             -CCCCcccceeEEEE-CCEEEEEeCCCCCCcccceEEEEeCCC--CeEEEC--------CCCCCchhceEEEE-ECCEEE
Confidence             78999999999998 599999999965677889999999999  999999        46899999999987 799999


Q ss_pred             EEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccCCc
Q 016774          280 IYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGL  359 (383)
Q Consensus       280 i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~  359 (383)
                      |+||.+... ..+++++||++                  +.+|+.+.+   +|.+|..|+++.+  +++|||+||.....
T Consensus       201 v~GG~~~~~-~~~~~~~yd~~------------------~~~W~~~~~---~p~~r~~~~~~~~--~~~l~v~GG~~~~~  256 (315)
T 4asc_A          201 VAAGVTDTG-LTSSAEVYSIT------------------DNKWAPFEA---FPQERSSLSLVSL--VGTLYAIGGFATLE  256 (315)
T ss_dssp             EEEEECSSS-EEEEEEEEETT------------------TTEEEEECC---CSSCCBSCEEEEE--TTEEEEEEEEEEEE
T ss_pred             EEeccCCCC-ccceEEEEECC------------------CCeEEECCC---CCCcccceeEEEE--CCEEEEECCccccC
Confidence            999997643 47899999998                  789999865   8999999999888  78999999985321


Q ss_pred             cccCCCccccccCeeeEEEee
Q 016774          360 VQPADTSGLRFDGRLLLVELV  380 (383)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~  380 (383)
                      ..... ......++++.+|++
T Consensus       257 ~~~~~-~~~~~~~~v~~yd~~  276 (315)
T 4asc_A          257 TESGE-LVPTELNDIWRYNEE  276 (315)
T ss_dssp             CTTSC-EEEEEEEEEEEEETT
T ss_pred             cCCcc-ccccccCcEEEecCC
Confidence            10011 111334677777764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=3.4e-38  Score=318.47  Aligned_cols=286  Identities=16%  Similarity=0.194  Sum_probs=227.8

Q ss_pred             CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcC-C----CCCCCCcceeEEEE--CCEEEEE
Q 016774           36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVN-S----GIPSGRFGHTCVVI--GDCLVLF  108 (383)
Q Consensus        36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~----~~p~~r~~~~~~~~--~~~iyv~  108 (383)
                      |.+|.+|+++ ++++|||+||...  ...+++++|++..+     +|+.+. +    .+|.+|.+|+++++  +++|||+
T Consensus       386 p~rr~g~~~~-~~~~iyv~GG~~~--~~~~~v~~yd~~~~-----~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~  457 (695)
T 2zwa_A          386 INRKFGDVDV-AGNDVFYMGGSNP--YRVNEILQLSIHYD-----KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLI  457 (695)
T ss_dssp             TCCBSCEEEE-CSSCEEEECCBSS--SBCCCEEEEEECSS-----CEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEE
T ss_pred             CCCceeEEEE-ECCEEEEECCCCC--CCcCcEEEEECCCC-----eEEEeccCCCCCCCCccccceEEEEEccCCEEEEE
Confidence            6667665544 8999999999755  67899999999655     999986 3    36889999999999  9999999


Q ss_pred             cCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCC
Q 016774          109 GGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSEN  188 (383)
Q Consensus       109 GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~  188 (383)
                      ||.......++++|+||+       .+++|+.+..   +|.+|..|+++.+.+++|||+||.+...    ++++||+.++
T Consensus       458 GG~~~~~~~~~dv~~yd~-------~t~~W~~~~~---~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~  523 (695)
T 2zwa_A          458 GGRKAPHQGLSDNWIFDM-------KTREWSMIKS---LSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEE  523 (695)
T ss_dssp             CCBSSTTCBCCCCEEEET-------TTTEEEECCC---CSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTT
T ss_pred             cCCCCCCCccccEEEEeC-------CCCcEEECCC---CCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCC
Confidence            999876667899999999       6999999865   7899999999997555999999986443    8999999999


Q ss_pred             cccCceEEcc-cCCCCCCCCCceEEEEc-C-CEEEEEcccCCCC-CccccEEEEEcccCccc------eEEecccccCCC
Q 016774          189 FCFGSWQQLV-THPSPPARSGHSLTRIG-G-NRTVLFGGRGVGY-EVLNDVWFLDVYEGFFK------WVQIPYELQNIP  258 (383)
Q Consensus       189 ~~~~~W~~~~-~~~~p~~r~~~~~~~~~-~-~~i~v~GG~~~~~-~~~~~v~~~~~~~~~~~------W~~i~~~~~~~~  258 (383)
                          +|+.++ .+..|.+|.+|++++++ + ++|||+||..... ...+++++||+.+  ++      |+.+.       
T Consensus       524 ----~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~--~~w~~~~~W~~~~-------  590 (695)
T 2zwa_A          524 ----IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA--ENATEPITVIKKL-------  590 (695)
T ss_dssp             ----EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT--TCSSCCEEEEEEE-------
T ss_pred             ----ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC--CccccceEEEEcC-------
Confidence                999998 34488999999977763 2 7899999985443 6788999999999  88      88884       


Q ss_pred             CCCCCCceeeEEEEEcCCEEEEEcCcCCCC--CCCCcEEEEEcCCCcccccccccccccccccccceeeccCCC----CC
Q 016774          259 AGFSLPRVGHSATLILGGRVLIYGGEDSAR--RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGY----KP  332 (383)
Q Consensus       259 ~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~----~p  332 (383)
                      ...+.+|.+|+++++.+++|||+||.+...  ...+++++||++                  +.+|+.+.....    .+
T Consensus       591 ~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~------------------t~~W~~~~~p~~~~~~~~  652 (695)
T 2zwa_A          591 QHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL------------------SETLTSIPISRRIWEDHS  652 (695)
T ss_dssp             ECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT------------------TTEEEECCCCHHHHHHSC
T ss_pred             CCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC------------------CCeEEEeeccccccCCCC
Confidence            223588999999874439999999987653  357899999998                  678885543211    12


Q ss_pred             CCccceeeeecCCCcEEEEEcCccCCccccCCCccccccCeeeEEEeec
Q 016774          333 NCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  381 (383)
Q Consensus       333 ~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (383)
                      ..+.+|+++.+. +++|||+||...     +.+++..++ ++|++|+..
T Consensus       653 p~~~gh~~~~~~-~g~i~v~GGg~~-----cfsfGt~~n-~i~~ldl~~  694 (695)
T 2zwa_A          653 LMLAGFSLVSTS-MGTIHIIGGGAT-----CYGFGSVTN-VGLKLIAIA  694 (695)
T ss_dssp             CCCSSCEEECC----CEEEECCEEE-----CTTSCEEEC-CCEEEEECC
T ss_pred             ccceeeeEEEeC-CCEEEEEeCCcc-----CcCcccccc-ceEEEEEEc
Confidence            357788887763 339999999855     555665555 999999875

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=4.3e-38  Score=289.67  Aligned_cols=275  Identities=17%  Similarity=0.194  Sum_probs=219.8

Q ss_pred             CCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCC-
Q 016774           36 PNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDR-  114 (383)
Q Consensus        36 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-  114 (383)
                      ..||.++..   ++.||++||.        +++.|++..+     +|...+...|.+|.+|+++..+++||++||.... 
T Consensus         6 ~~~r~~~~~---~~~i~~~GG~--------~~~~yd~~~~-----~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~   69 (318)
T 2woz_A            6 DIPRHGMFV---KDLILLVNDT--------AAVAYDPMEN-----ECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDE   69 (318)
T ss_dssp             SSCCCCCSE---EEEEEEECSS--------EEEEEETTTT-----EEEEEEECTTSCSSEEEEECSSSCEEEEESSCC--
T ss_pred             cccccccee---cchhhhcccc--------ceEEECCCCC-----ceecccCCccCCccceEEEEECCEEEEECCcccCc
Confidence            346765543   4799999993        4788998555     9998643446799999999999999999996321 


Q ss_pred             -C---CCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCC-CCCcccceEEEeccCCc
Q 016774          115 -G---NRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGL-YGLRLGDTWVLELSENF  189 (383)
Q Consensus       115 -~---~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~-~~~~~~~~~~~d~~~~~  189 (383)
                       .   ...+++++||+       .+.+|+++..   +|.+|..|+++.+++ +||++||... ....++++++||+.++ 
T Consensus        70 ~~~~~~~~~~~~~~d~-------~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~-  137 (318)
T 2woz_A           70 ENKDQPLQSYFFQLDN-------VSSEWVGLPP---LPSARCLFGLGEVDD-KIYVVAGKDLQTEASLDSVLCYDPVAA-  137 (318)
T ss_dssp             -----CCCBEEEEEET-------TTTEEEECSC---BSSCBCSCEEEEETT-EEEEEEEEBTTTCCEEEEEEEEETTTT-
T ss_pred             cccCCCccccEEEEeC-------CCCcEEECCC---CCccccccceEEECC-EEEEEcCccCCCCcccceEEEEeCCCC-
Confidence             1   22445999999       6999999865   789999999999877 9999999863 3457899999999999 


Q ss_pred             ccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeE
Q 016774          190 CFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHS  269 (383)
Q Consensus       190 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~  269 (383)
                         +|++++  ++|.+|..|+++.+ +++||++||........+++++||+.+  ++|+++        ..+|.+|..|+
T Consensus       138 ---~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~--------~~~p~~r~~~~  201 (318)
T 2woz_A          138 ---KWSEVK--NLPIKVYGHNVISH-NGMIYCLGGKTDDKKCTNRVFIYNPKK--GDWKDL--------APMKTPRSMFG  201 (318)
T ss_dssp             ---EEEEEC--CCSSCEESCEEEEE-TTEEEEECCEESSSCBCCCEEEEETTT--TEEEEE--------CCCSSCCBSCE
T ss_pred             ---CEeECC--CCCCcccccEEEEE-CCEEEEEcCCCCCCCccceEEEEcCCC--CEEEEC--------CCCCCCcccce
Confidence               999998  78999999999998 699999999865667789999999999  999999        46889999999


Q ss_pred             EEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEE
Q 016774          270 ATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYL  349 (383)
Q Consensus       270 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l  349 (383)
                      +++ .+++|||+||.+... ..+++++||++                  +++|+.+..   +|.+|..|+++..  +++|
T Consensus       202 ~~~-~~~~iyv~GG~~~~~-~~~~~~~yd~~------------------~~~W~~~~~---~p~~r~~~~~~~~--~~~i  256 (318)
T 2woz_A          202 VAI-HKGKIVIAGGVTEDG-LSASVEAFDLK------------------TNKWEVMTE---FPQERSSISLVSL--AGSL  256 (318)
T ss_dssp             EEE-ETTEEEEEEEEETTE-EEEEEEEEETT------------------TCCEEECCC---CSSCCBSCEEEEE--TTEE
T ss_pred             EEE-ECCEEEEEcCcCCCC-ccceEEEEECC------------------CCeEEECCC---CCCcccceEEEEE--CCEE
Confidence            887 899999999987643 46789999998                  788999855   8899999999888  7899


Q ss_pred             EEEcCccCCccccCCCccccccCeeeEEEee
Q 016774          350 YVFGGMVDGLVQPADTSGLRFDGRLLLVELV  380 (383)
Q Consensus       350 ~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (383)
                      ||+||.......... ......+++|.+|++
T Consensus       257 ~v~GG~~~~~~~~~~-~~~~~~~~v~~yd~~  286 (318)
T 2woz_A          257 YAIGGFAMIQLESKE-FAPTEVNDIWKYEDD  286 (318)
T ss_dssp             EEECCBCCBC----C-CBCCBCCCEEEEETT
T ss_pred             EEECCeeccCCCCce-eccceeeeEEEEeCC
Confidence            999998543211111 111334677777764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=1.4e-36  Score=283.96  Aligned_cols=257  Identities=20%  Similarity=0.212  Sum_probs=203.3

Q ss_pred             hcccc--ccceeeeecCCCCCCCC-CCCcccceeeeCCEEEEEccc-c---CCCCCCCceEEEEeccCcccccceEEcCC
Q 016774           15 VTQLE--SVSCRNISDADGDLVLP-NPRASHSLNFVSNCLVLFGGG-C---EGGRHLDDTWVAYVGNDFQGMLKWQKVNS   87 (383)
Q Consensus        15 ~~~~~--~~~W~~~~~~~~~~~~p-~~r~~~~~~~~~~~i~v~GG~-~---~~~~~~~~~~~~~~~~~~~~~~~W~~~~~   87 (383)
                      .|++.  +.+|+.++..      | .+|.+|++++++++|||+||. .   ......+++++|++..+     +|++++.
T Consensus        35 ~~d~~~~~~~W~~~~~~------p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~-----~W~~~~~  103 (357)
T 2uvk_A           35 KLDTQAKDKKWTALAAF------PGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN-----SWVKLMS  103 (357)
T ss_dssp             EEETTSSSCCEEECCCC------TTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTT-----EEEECSC
T ss_pred             EEccccCCCCeeECCCC------CCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCC-----cEEECCC
Confidence            45665  4899998653      6 799999999999999999997 2   23456789999999655     9999986


Q ss_pred             CCCCCCcceeEEEECCEEEEEcCccCCC---------------------------------CCccceeeeecccccCCcc
Q 016774           88 GIPSGRFGHTCVVIGDCLVLFGGINDRG---------------------------------NRHNDTWIGQIACHENLGI  134 (383)
Q Consensus        88 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------------------------------~~~~~~~~~d~~~~~~~~~  134 (383)
                      .+|.+|.+|++++++++|||+||.....                                 ..++++++||+       .
T Consensus       104 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~-------~  176 (357)
T 2uvk_A          104 HAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP-------S  176 (357)
T ss_dssp             CCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET-------T
T ss_pred             CCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC-------C
Confidence            5569999999999999999999975321                                 24689999999       6


Q ss_pred             cccEEEccCCCCCCCcccc-ceeEEECCcEEEEEcccCCCCCcccceEEEec--cCCcccCceEEcccCCCCCCCCCceE
Q 016774          135 TLSWRLLDVGSIAPPARGA-HAACCIDNRKMVIHAGIGLYGLRLGDTWVLEL--SENFCFGSWQQLVTHPSPPARSGHSL  211 (383)
Q Consensus       135 ~~~W~~~~~~~~~p~~r~~-~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~--~~~~~~~~W~~~~~~~~p~~r~~~~~  211 (383)
                      +++|+.+..   +|.+|.. |+++..++ +|||+||....+...+++++||+  .++    +|++++..+.|.+|..|++
T Consensus       177 ~~~W~~~~~---~p~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~~d~d~~~~----~W~~~~~~~~~~~~~~~~~  248 (357)
T 2uvk_A          177 TQQWSYAGE---SPWYGTAGAAVVNKGD-KTWLINGEAKPGLRTDAVFELDFTGNNL----KWNKLAPVSSPDGVAGGFA  248 (357)
T ss_dssp             TTEEEEEEE---CSSCCCBSCEEEEETT-EEEEECCEEETTEECCCEEEEECC---C----EEEECCCSSTTTCCBSCEE
T ss_pred             CCcEEECCC---CCCCCcccccEEEECC-EEEEEeeecCCCcccCceEEEEecCCCC----cEEecCCCCCCcccccceE
Confidence            999999865   6666555 88887776 99999998655556889999987  777    9999984345556778888


Q ss_pred             EEEcCCEEEEEcccCCC----------------CCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcC
Q 016774          212 TRIGGNRTVLFGGRGVG----------------YEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILG  275 (383)
Q Consensus       212 ~~~~~~~i~v~GG~~~~----------------~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~  275 (383)
                      +.+ +++|||+||....                ....+++++||+++  .+|+++        +.+|.+|..|++++ .+
T Consensus       249 ~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~--~~W~~~--------~~~p~~r~~~~~~~-~~  316 (357)
T 2uvk_A          249 GIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN--GKWDKS--------GELSQGRAYGVSLP-WN  316 (357)
T ss_dssp             EEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEE--------EECSSCCBSSEEEE-ET
T ss_pred             EEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC--CceeeC--------CCCCCCcccceeEE-eC
Confidence            888 5999999997422                22346899999999  999999        57899999999886 89


Q ss_pred             CEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeecc
Q 016774          276 GRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRA  327 (383)
Q Consensus       276 ~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  327 (383)
                      ++|||+||.+..+...+++++|+++                  +++|....+
T Consensus       317 ~~i~v~GG~~~~~~~~~~v~~l~~~------------------~~~~~~~~~  350 (357)
T 2uvk_A          317 NSLLIIGGETAGGKAVTDSVLITVK------------------DNKVTVQNL  350 (357)
T ss_dssp             TEEEEEEEECGGGCEEEEEEEEEC-------------------CCSCEEEC-
T ss_pred             CEEEEEeeeCCCCCEeeeEEEEEEc------------------CcEeEeeec
Confidence            9999999998877778999999998                  788887754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=1.2e-32  Score=277.92  Aligned_cols=258  Identities=16%  Similarity=0.191  Sum_probs=204.1

Q ss_pred             hccccccceeeee-c--CCCCCCCCCCCcccceeee--CCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCC
Q 016774           15 VTQLESVSCRNIS-D--ADGDLVLPNPRASHSLNFV--SNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGI   89 (383)
Q Consensus        15 ~~~~~~~~W~~~~-~--~~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~   89 (383)
                      .|++.+++|+.+. .  .+..   |.+|.+|+++++  +++|||+||........+++|+|+...+     +|+++. .+
T Consensus       416 ~yd~~~~~W~~~~~~~p~~~~---p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~-----~W~~~~-~~  486 (695)
T 2zwa_A          416 QLSIHYDKIDMKNIEVSSSEV---PVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR-----EWSMIK-SL  486 (695)
T ss_dssp             EEEECSSCEEEEECCCCCSCC---CCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT-----EEEECC-CC
T ss_pred             EEECCCCeEEEeccCCCCCCC---CccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC-----cEEECC-CC
Confidence            5788999999998 4  2334   899999999999  9999999998766667899999999655     999997 47


Q ss_pred             CCCCcceeEEEE-CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEEC-C-cEEEE
Q 016774           90 PSGRFGHTCVVI-GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCID-N-RKMVI  166 (383)
Q Consensus        90 p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~-~~i~v  166 (383)
                      |.+|.+|+++++ +++|||+||.....    ++++||+       .+++|+.+...+..|.+|.+|+++.++ + ++|||
T Consensus       487 p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~-------~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          487 SHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNV-------TEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             SBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEET-------TTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcccceEEEEcCCEEEEECCCCCCC----CEEEEEC-------CCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            899999999997 99999999986543    8999999       699999998877789999999977755 2 58999


Q ss_pred             EcccCCCC-CcccceEEEeccCCcccCc------eEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCC--CccccEEE
Q 016774          167 HAGIGLYG-LRLGDTWVLELSENFCFGS------WQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY--EVLNDVWF  237 (383)
Q Consensus       167 ~GG~~~~~-~~~~~~~~~d~~~~~~~~~------W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~--~~~~~v~~  237 (383)
                      +||....+ ..++++++||+.++    +      |+++.. ..+.+|.+|+++.+++++|||+||.....  ...+++++
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~----~w~~~~~W~~~~~-~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  630 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAE----NATEPITVIKKLQ-HPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS  630 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTT----CSSCCEEEEEEEE-CGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred             ECCcCCCCCeeeCcEEEEEccCC----ccccceEEEEcCC-CCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence            99986554 57899999999998    7      888873 12578999999999559999999985333  36789999


Q ss_pred             EEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC---CCCCCCcEEEEEcC
Q 016774          238 LDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS---ARRRKDDFWVLDTK  300 (383)
Q Consensus       238 ~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~---~~~~~~~~~~~d~~  300 (383)
                      ||+.+  ++|+.++.+.... +..+..+.+|+++++.+++|||+||...   -+...+++|.+|+.
T Consensus       631 yd~~t--~~W~~~~~p~~~~-~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~  693 (695)
T 2zwa_A          631 LDPLS--ETLTSIPISRRIW-EDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAI  693 (695)
T ss_dssp             EETTT--TEEEECCCCHHHH-HHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEEC
T ss_pred             EECCC--CeEEEeecccccc-CCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEE
Confidence            99999  9999764111000 0012256788888744559999999642   24456799999986

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.97  E-value=6.6e-31  Score=264.69  Aligned_cols=287  Identities=10%  Similarity=0.045  Sum_probs=212.5

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccc--ee-eeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHS--LN-FVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIP   90 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~--~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p   90 (383)
                      ..||+.+++|+.+...      |.+|..++  ++ +.+++||++||...     .++++||+..+     +|+++. .+|
T Consensus       222 ~~yd~~t~~w~~~~~~------~~~~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~-----~W~~~~-~~~  284 (656)
T 1k3i_A          222 SSWDPSTGIVSDRTVT------VTKHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSD-----SWIPGP-DMQ  284 (656)
T ss_dssp             EEECTTTCCBCCCEEE------ECSCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGT-----EEEECC-CCS
T ss_pred             EEEeCCCCcEEeCccc------CCCCCCccccccCCCCCCEEEeCCCCC-----CceEEecCcCC-----ceeECC-CCC
Confidence            5689999999998654      45565554  33 35889999999643     27899999554     999997 588


Q ss_pred             CCCcceeEEEE-CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcc
Q 016774           91 SGRFGHTCVVI-GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAG  169 (383)
Q Consensus        91 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG  169 (383)
                      .+|..|+++++ +++|||+||........+++++||+       .+++|+.+...+..|.++..+.++...++++|++||
T Consensus       285 ~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~-------~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg  357 (656)
T 1k3i_A          285 VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP-------SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW  357 (656)
T ss_dssp             SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET-------TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC
T ss_pred             ccccccceEEecCCeEEEEeCcccCCcccccceEeCC-------CCCcceeCCCccccccccccccceeecCCceEEEEC
Confidence            89999999999 8999999996555557889999999       689999985433223333233333334459999999


Q ss_pred             cCCCC---CcccceEEEeccCCcccCceEEcc-cCCC----CCCCCCceEEEE--cCCEEEEEcccCC--CCCccc---c
Q 016774          170 IGLYG---LRLGDTWVLELSENFCFGSWQQLV-THPS----PPARSGHSLTRI--GGNRTVLFGGRGV--GYEVLN---D  234 (383)
Q Consensus       170 ~~~~~---~~~~~~~~~d~~~~~~~~~W~~~~-~~~~----p~~r~~~~~~~~--~~~~i~v~GG~~~--~~~~~~---~  234 (383)
                      .+...   ...++++.||+.++    .|.+.. ....    +.++..++++.+  .+++||++||...  .....+   .
T Consensus       358 ~~g~~~~~~~~~~v~~yd~~~~----~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~  433 (656)
T 1k3i_A          358 KKGSVFQAGPSTAMNWYYTSGS----GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHI  433 (656)
T ss_dssp             GGGCEEECCSSSEEEEEECSTT----CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEE
T ss_pred             CCCcEEEecCccceeeeecCCc----ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceE
Confidence            74221   24678999999998    887644 1111    223455666542  3699999999742  223344   7


Q ss_pred             EEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCC-----CCCCCcEEEEEcCCCccccccc
Q 016774          235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA-----RRRKDDFWVLDTKAIPFTSVQQ  309 (383)
Q Consensus       235 v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~-----~~~~~~~~~~d~~~~~~~~~~~  309 (383)
                      +++||+.+  .+|.++.      .+.+|.+|..|+++++.+++|||+||.+..     ....+++++||++         
T Consensus       434 v~~yd~~~--~~W~~~~------~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~---------  496 (656)
T 1k3i_A          434 ITLGEPGT--SPNTVFA------SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE---------  496 (656)
T ss_dssp             EECCSTTS--CCEEEEC------TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG---------
T ss_pred             EEcCCCCC--CCeeEEc------cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC---------
Confidence            89999999  9999982      357899999999887559999999997632     2446889999987         


Q ss_pred             ccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774          310 SMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  357 (383)
Q Consensus       310 ~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~  357 (383)
                               +++|+.+..   +|.+|.+|+++++..+++|||+||...
T Consensus       497 ---------t~~W~~~~~---~~~~R~~hs~a~ll~dg~v~v~GG~~~  532 (656)
T 1k3i_A          497 ---------QDTFYKQNP---NSIVRVYHSISLLLPDGRVFNGGGGLC  532 (656)
T ss_dssp             ---------GTEEEECCC---CSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred             ---------CCceeecCC---CCCccccccHhhcCCCcEEEecCCCCC
Confidence                     789998754   889999999887766789999999743

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.96  E-value=4.2e-29  Score=251.52  Aligned_cols=280  Identities=14%  Similarity=0.060  Sum_probs=200.0

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeee--CCEEEEEccccCCC-----CCCCceEEEEeccCcccccceEEcC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFV--SNCLVLFGGGCEGG-----RHLDDTWVAYVGNDFQGMLKWQKVN   86 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~-----~~~~~~~~~~~~~~~~~~~~W~~~~   86 (383)
                      ..|++..++|+.+.        |.||..++++++  +++||++||.....     ...+++++||+..+     +|+++.
T Consensus       169 ~~~dp~~~~W~~~~--------~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-----~w~~~~  235 (656)
T 1k3i_A          169 TAPQPGLGRWGPTI--------DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-----IVSDRT  235 (656)
T ss_dssp             CCCCTTSCEEEEEE--------ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC-----CBCCCE
T ss_pred             ccCCCCCCeeeeec--------cCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC-----cEEeCc
Confidence            34678899999886        345666666666  88999999964421     12346788888554     999886


Q ss_pred             CCCCCCCccee--EEE-ECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcE
Q 016774           87 SGIPSGRFGHT--CVV-IGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRK  163 (383)
Q Consensus        87 ~~~p~~r~~~~--~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~  163 (383)
                      . +|.+|..|+  ++. .+++||++||....     ++++||+       .+++|+++..   +|.+|..|+++.+.+++
T Consensus       236 ~-~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~-------~t~~W~~~~~---~~~~R~~~s~~~~~dg~  299 (656)
T 1k3i_A          236 V-TVTKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDS-------SSDSWIPGPD---MQVARGYQSSATMSDGR  299 (656)
T ss_dssp             E-EECSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEG-------GGTEEEECCC---CSSCCSSCEEEECTTSC
T ss_pred             c-cCCCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecC-------cCCceeECCC---CCccccccceEEecCCe
Confidence            3 555665554  343 57889999997542     6999999       6999999864   78999999999985569


Q ss_pred             EEEEcccCCCCCcccceEEEeccCCcccCceEEccc---CCCCCCCCCceEEEEcCCEEEEEcccCCCC---CccccEEE
Q 016774          164 MVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVT---HPSPPARSGHSLTRIGGNRTVLFGGRGVGY---EVLNDVWF  237 (383)
Q Consensus       164 i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~---~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~---~~~~~v~~  237 (383)
                      ||++||.......++++++||+.++    +|+.++.   .+++..|.. +++.. ++++|++||.+...   ...++++.
T Consensus       300 iyv~GG~~~~~~~~~~~e~yd~~t~----~W~~~~~~~~~p~~~~~~~-~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~  373 (656)
T 1k3i_A          300 VFTIGGSWSGGVFEKNGEVYSPSSK----TWTSLPNAKVNPMLTADKQ-GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNW  373 (656)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTT----EEEEETTSCSGGGCCCCTT-GGGTT-TCSCCEEECGGGCEEECCSSSEEEE
T ss_pred             EEEEeCcccCCcccccceEeCCCCC----cceeCCCcccccccccccc-ceeec-CCceEEEECCCCcEEEecCccceee
Confidence            9999996444457889999999999    9999851   234444432 33334 68999999984221   23568999


Q ss_pred             EEcccCccceEEecccccCCCCCCC------CCceeeEEEEE--cCCEEEEEcCcCCC--CCCCC---cEEEEEcCCCcc
Q 016774          238 LDVYEGFFKWVQIPYELQNIPAGFS------LPRVGHSATLI--LGGRVLIYGGEDSA--RRRKD---DFWVLDTKAIPF  304 (383)
Q Consensus       238 ~~~~~~~~~W~~i~~~~~~~~~~~p------~~r~~~~~~~~--~~~~l~i~GG~~~~--~~~~~---~~~~~d~~~~~~  304 (383)
                      ||+.+  .+|....       +..+      .++..++++++  .+++||++||....  ....+   ++++||+.    
T Consensus       374 yd~~~--~~w~~~~-------~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~----  440 (656)
T 1k3i_A          374 YYTSG--SGDVKSA-------GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----  440 (656)
T ss_dssp             EECST--TCEEEEE-------EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT----
T ss_pred             eecCC--cceeecC-------CccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC----
Confidence            99999  8887642       2222      23344555532  58999999997532  22244   56666666    


Q ss_pred             cccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774          305 TSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  357 (383)
Q Consensus       305 ~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~  357 (383)
                                    +.+|..+. .+.+|.+|..|+++++. +++|||+||...
T Consensus       441 --------------~~~W~~~~-~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~  477 (656)
T 1k3i_A          441 --------------TSPNTVFA-SNGLYFARTFHTSVVLP-DGSTFITGGQRR  477 (656)
T ss_dssp             --------------SCCEEEEC-TTCCSSCCBSCEEEECT-TSCEEEECCBSB
T ss_pred             --------------CCCeeEEc-cCCCCCCcccCCeEECC-CCCEEEECCccc
Confidence                          78898876 24589999999987765 569999999854

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.15  E-value=0.13  Score=46.15  Aligned_cols=201  Identities=8%  Similarity=-0.019  Sum_probs=105.0

Q ss_pred             CCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccce-EEcCCCCCCCCcceeEEE-ECCEEEEEcCccCCC
Q 016774           38 PRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKW-QKVNSGIPSGRFGHTCVV-IGDCLVLFGGINDRG  115 (383)
Q Consensus        38 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~  115 (383)
                      ....+.++..++++|+....      .+.+.++|..+.     +- ..++. .   ..-+.++. .++++|+....    
T Consensus        43 g~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~-----~~~~~i~~-~---~~p~~i~~~~~g~lyv~~~~----  103 (328)
T 3dsm_A           43 GDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTF-----KEVGRITG-F---TSPRYIHFLSDEKAYVTQIW----  103 (328)
T ss_dssp             BSCEEEEEEETTEEEEEEGG------GTEEEEEETTTC-----CEEEEEEC-C---SSEEEEEEEETTEEEEEEBS----
T ss_pred             CccceEEEEECCEEEEEEcC------CCEEEEEECccc-----EEEEEcCC-C---CCCcEEEEeCCCeEEEEECC----
Confidence            33445566778999998752      346777777433     22 22221 1   22234444 57789988642    


Q ss_pred             CCccceeeeecccccCCcccccEEE-ccCCCCCC-CccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCc
Q 016774          116 NRHNDTWIGQIACHENLGITLSWRL-LDVGSIAP-PARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGS  193 (383)
Q Consensus       116 ~~~~~~~~~d~~~~~~~~~~~~W~~-~~~~~~~p-~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~  193 (383)
                        .+.+.++|+       ++.+-.. +.. +... ....-+.++. .++++|+..- .    ..+.+.++|+.++    +
T Consensus       104 --~~~v~~iD~-------~t~~~~~~i~~-g~~~~~~~~p~~i~~-~~~~lyv~~~-~----~~~~v~viD~~t~----~  163 (328)
T 3dsm_A          104 --DYRIFIINP-------KTYEITGYIEC-PDMDMESGSTEQMVQ-YGKYVYVNCW-S----YQNRILKIDTETD----K  163 (328)
T ss_dssp             --CSEEEEEET-------TTTEEEEEEEC-TTCCTTTCBCCCEEE-ETTEEEEEEC-T----TCCEEEEEETTTT----E
T ss_pred             --CCeEEEEEC-------CCCeEEEEEEc-CCccccCCCcceEEE-ECCEEEEEcC-C----CCCEEEEEECCCC----e
Confidence              246889998       4554432 222 2100 0001223333 5568999742 0    1356999999987    4


Q ss_pred             eEEc-ccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCc----cccEEEEEcccCccceEEecccccCCCCCCCCCceee
Q 016774          194 WQQL-VTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEV----LNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGH  268 (383)
Q Consensus       194 W~~~-~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~----~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~  268 (383)
                      .... +.+..|     +.+....++++|+..........    .+.|+++|+.+  .+..+.-        ..+....-.
T Consensus       164 ~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t--~~v~~~~--------~~~~g~~p~  228 (328)
T 3dsm_A          164 VVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET--FTVEKQF--------KFKLGDWPS  228 (328)
T ss_dssp             EEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT--TEEEEEE--------ECCTTCCCE
T ss_pred             EEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC--CeEEEEE--------ecCCCCCce
Confidence            4332 222222     23344445787776533211111    25799999987  6544321        112111112


Q ss_pred             EEEEEc-CCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          269 SATLIL-GGRVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       269 ~~~~~~-~~~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                      .++... ++.||+..+         .++.+|+++
T Consensus       229 ~la~~~d~~~lyv~~~---------~v~~~d~~t  253 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN---------DIWRMPVEA  253 (328)
T ss_dssp             EEEECTTSCEEEEESS---------SEEEEETTC
T ss_pred             eEEEecCCCEEEEEcc---------EEEEEECCC
Confidence            233322 567888653         689999874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.05  E-value=0.11  Score=44.45  Aligned_cols=196  Identities=13%  Similarity=0.034  Sum_probs=110.2

Q ss_pred             cceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCC
Q 016774           94 FGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLY  173 (383)
Q Consensus        94 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~  173 (383)
                      +-+.+...++.+|+-.|..+    .+.+..+|+       ++.+-..-..   .|....+...+..++ ++|+....   
T Consensus        22 ftqGL~~~~~~LyestG~~g----~S~v~~vD~-------~tgkv~~~~~---l~~~~fgeGi~~~~~-~ly~ltw~---   83 (243)
T 3mbr_X           22 FTEGLFYLRGHLYESTGETG----RSSVRKVDL-------ETGRILQRAE---VPPPYFGAGIVAWRD-RLIQLTWR---   83 (243)
T ss_dssp             CEEEEEEETTEEEEEECCTT----SCEEEEEET-------TTCCEEEEEE---CCTTCCEEEEEEETT-EEEEEESS---
T ss_pred             ccccEEEECCEEEEECCCCC----CceEEEEEC-------CCCCEEEEEe---CCCCcceeEEEEeCC-EEEEEEee---
Confidence            44577778899999998654    245888999       4665544322   233334445555555 99998653   


Q ss_pred             CCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccce-EEecc
Q 016774          174 GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKW-VQIPY  252 (383)
Q Consensus       174 ~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W-~~i~~  252 (383)
                         .+.+++||.++-      +.+.  ..+.+..+..++.. ++.+|+.-|.       +.++++|+++  .+- ..++ 
T Consensus        84 ---~~~v~v~D~~tl------~~~~--ti~~~~~Gwglt~d-g~~L~vSdgs-------~~l~~iDp~t--~~~~~~I~-  141 (243)
T 3mbr_X           84 ---NHEGFVYDLATL------TPRA--RFRYPGEGWALTSD-DSHLYMSDGT-------AVIRKLDPDT--LQQVGSIK-  141 (243)
T ss_dssp             ---SSEEEEEETTTT------EEEE--EEECSSCCCEEEEC-SSCEEEECSS-------SEEEEECTTT--CCEEEEEE-
T ss_pred             ---CCEEEEEECCcC------cEEE--EEeCCCCceEEeeC-CCEEEEECCC-------CeEEEEeCCC--CeEEEEEE-
Confidence               367999999875      4444  11222345555544 5778888663       2599999987  443 2232 


Q ss_pred             cccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccC-CC-
Q 016774          253 ELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE-GY-  330 (383)
Q Consensus       253 ~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~-  330 (383)
                           .+..+.+.....-....+++||+---.      .+++.++|+.+...               -.|-.+... .. 
T Consensus       142 -----V~~~g~~~~~lNeLe~~~G~lyanvw~------s~~I~vIDp~tG~V---------------~~~idl~~l~~~~  195 (243)
T 3mbr_X          142 -----VTAGGRPLDNLNELEWVNGELLANVWL------TSRIARIDPASGKV---------------VAWIDLQALVPDA  195 (243)
T ss_dssp             -----CEETTEECCCEEEEEEETTEEEEEETT------TTEEEEECTTTCBE---------------EEEEECGGGSTTT
T ss_pred             -----EccCCcccccceeeEEeCCEEEEEECC------CCeEEEEECCCCCE---------------EEEEECCcCcccc
Confidence                 111122211111112257787744322      45789999885431               122222210 00 


Q ss_pred             ----CCCCccceeeeecCCCcEEEEEcCc
Q 016774          331 ----KPNCRSFHRACPDYSGRYLYVFGGM  355 (383)
Q Consensus       331 ----~p~~r~~~~~~~~~~~~~l~v~GG~  355 (383)
                          .+..-.--+.+....++.+||.|=.
T Consensus       196 ~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          196 DALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             TSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             ccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence                1122233466677778999999965

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.45  E-value=0.31  Score=42.16  Aligned_cols=194  Identities=13%  Similarity=0.044  Sum_probs=105.6

Q ss_pred             eeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCC
Q 016774           96 HTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGL  175 (383)
Q Consensus        96 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~  175 (383)
                      +.+...++.+|+-.|..+    .+.+.++|+       ++.+-..-..   .+...++...+..++ ++|+....     
T Consensus        46 qGL~~~~~~LyestG~~g----~S~v~~vD~-------~Tgkv~~~~~---l~~~~FgeGit~~g~-~ly~ltw~-----  105 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG----RSSIRKVDI-------ESGKTLQQIE---LGKRYFGEGISDWKD-KIVGLTWK-----  105 (262)
T ss_dssp             EEEEEETTEEEEEEEETT----EEEEEEECT-------TTCCEEEEEE---CCTTCCEEEEEEETT-EEEEEESS-----
T ss_pred             ceEEEECCEEEEECCCCC----CceEEEEEC-------CCCcEEEEEe---cCCccceeEEEEeCC-EEEEEEee-----
Confidence            555666888999998653    245888998       4655543322   222223344455555 99998653     


Q ss_pred             cccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccce-EEecccc
Q 016774          176 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKW-VQIPYEL  254 (383)
Q Consensus       176 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W-~~i~~~~  254 (383)
                       .+.+++||+++.      +.+.  ..+.+-.+..++.. ++.+|+.-|.       +.++++|+++  .+- ..++.  
T Consensus       106 -~~~v~v~D~~t~------~~~~--ti~~~~eG~glt~d-g~~L~~SdGs-------~~i~~iDp~T--~~v~~~I~V--  164 (262)
T 3nol_A          106 -NGLGFVWNIRNL------RQVR--SFNYDGEGWGLTHN-DQYLIMSDGT-------PVLRFLDPES--LTPVRTITV--  164 (262)
T ss_dssp             -SSEEEEEETTTC------CEEE--EEECSSCCCCEEEC-SSCEEECCSS-------SEEEEECTTT--CSEEEEEEC--
T ss_pred             -CCEEEEEECccC------cEEE--EEECCCCceEEecC-CCEEEEECCC-------CeEEEEcCCC--CeEEEEEEe--
Confidence             367999999875      3333  11112244445544 4778877653       3599999987  443 23320  


Q ss_pred             cCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccC-C----
Q 016774          255 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE-G----  329 (383)
Q Consensus       255 ~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~----  329 (383)
                        .....|..... -+.. .+++||+-- .     ..+++.++|+.+...               -.|..+... +    
T Consensus       165 --~~~g~~~~~lN-ELe~-~~G~lyan~-w-----~~~~I~vIDp~tG~V---------------~~~Id~~~L~~~~~~  219 (262)
T 3nol_A          165 --TAHGEELPELN-ELEW-VDGEIFANV-W-----QTNKIVRIDPETGKV---------------TGIIDLNGILAEAGP  219 (262)
T ss_dssp             --EETTEECCCEE-EEEE-ETTEEEEEE-T-----TSSEEEEECTTTCBE---------------EEEEECTTGGGGSCS
T ss_pred             --ccCCccccccc-eeEE-ECCEEEEEE-c-----cCCeEEEEECCCCcE---------------EEEEECCcCcccccc
Confidence              00111212111 1222 577877532 1     145789999885331               122222100 0    


Q ss_pred             CCCCCccceeeeecCCCcEEEEEcCc
Q 016774          330 YKPNCRSFHRACPDYSGRYLYVFGGM  355 (383)
Q Consensus       330 ~~p~~r~~~~~~~~~~~~~l~v~GG~  355 (383)
                      ..+..-.-.+.+....++.+||.|-.
T Consensus       220 ~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          220 LPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             CCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             ccCcCCceEEEEEcCCCCEEEEECCC
Confidence            01112233577777888999999965

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.32  E-value=0.47  Score=41.20  Aligned_cols=197  Identities=12%  Similarity=0.055  Sum_probs=104.2

Q ss_pred             eeEEEEC-CEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCC
Q 016774           96 HTCVVIG-DCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYG  174 (383)
Q Consensus        96 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~  174 (383)
                      +.+...+ +.+|+..|...    .+.+..+|+       ++.+-..-..   .+....+...+..+ +.+|+...     
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~-------~tg~v~~~i~---l~~~~fgeGi~~~g-~~lyv~t~-----   83 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG----RSSVRQVAL-------QTGKVENIHK---MDDSYFGEGLTLLN-EKLYQVVW-----   83 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT----TCEEEEEET-------TTCCEEEEEE---CCTTCCEEEEEEET-TEEEEEET-----
T ss_pred             ccEEEeCCCeEEEECCCCC----CCEEEEEEC-------CCCCEEEEEe---cCCCcceEEEEEeC-CEEEEEEe-----
Confidence            5666666 67999877432    246889999       4665443222   11222233444444 48999854     


Q ss_pred             CcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccce-EEeccc
Q 016774          175 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKW-VQIPYE  253 (383)
Q Consensus       175 ~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W-~~i~~~  253 (383)
                       ..+.+++||+.+.      +.+..-+.+. ..+..++. .++++|+.-|.       +.++++|+++  .+- ..++. 
T Consensus        84 -~~~~v~viD~~t~------~v~~~i~~g~-~~g~glt~-Dg~~l~vs~gs-------~~l~viD~~t--~~v~~~I~V-  144 (266)
T 2iwa_A           84 -LKNIGFIYDRRTL------SNIKNFTHQM-KDGWGLAT-DGKILYGSDGT-------SILYEIDPHT--FKLIKKHNV-  144 (266)
T ss_dssp             -TCSEEEEEETTTT------EEEEEEECCS-SSCCEEEE-CSSSEEEECSS-------SEEEEECTTT--CCEEEEEEC-
T ss_pred             -cCCEEEEEECCCC------cEEEEEECCC-CCeEEEEE-CCCEEEEECCC-------CeEEEEECCC--CcEEEEEEE-
Confidence             2356999999875      3333111111 12233333 35778887542       3699999987  442 23320 


Q ss_pred             ccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccC-----
Q 016774          254 LQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE-----  328 (383)
Q Consensus       254 ~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-----  328 (383)
                         .....|..+.. .+.. .++++|+--..      .+++.++|+.+...               -.|..+...     
T Consensus       145 ---g~~~~p~~~~n-ele~-~dg~lyvn~~~------~~~V~vID~~tg~V---------------~~~I~~~g~~~~~~  198 (266)
T 2iwa_A          145 ---KYNGHRVIRLN-ELEY-INGEVWANIWQ------TDCIARISAKDGTL---------------LGWILLPNLRKKLI  198 (266)
T ss_dssp             ---EETTEECCCEE-EEEE-ETTEEEEEETT------SSEEEEEETTTCCE---------------EEEEECHHHHHHHH
T ss_pred             ---CCCCcccccce-eEEE-ECCEEEEecCC------CCeEEEEECCCCcE---------------EEEEECCCcccccc
Confidence               00111222222 2222 47788765322      45799999985321               122222100     


Q ss_pred             -CCCCCCccceeeeecCCCcEEEEEcCccC
Q 016774          329 -GYKPNCRSFHRACPDYSGRYLYVFGGMVD  357 (383)
Q Consensus       329 -~~~p~~r~~~~~~~~~~~~~l~v~GG~~~  357 (383)
                       ...+..-.-.+.+....++.+||.|+..+
T Consensus       199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          199 DEGFRDIDVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             HTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             cccccccCceEEEEEcCCCCEEEEECCCCC
Confidence             00111112256667777889999998743

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.99  E-value=0.52  Score=40.80  Aligned_cols=191  Identities=9%  Similarity=-0.065  Sum_probs=102.6

Q ss_pred             eeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCC
Q 016774           96 HTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGL  175 (383)
Q Consensus        96 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~  175 (383)
                      +.+...++.||+..|...      .+.++|+       ++.+-..-..    +...++...+.. ++++|+....     
T Consensus        58 qGL~~~~~~Ly~stG~~g------~v~~iD~-------~Tgkv~~~~l----~~~~FgeGit~~-g~~Ly~ltw~-----  114 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQG------TLRQLSL-------ESAQPVWMER----LGNIFAEGLASD-GERLYQLTWT-----  114 (268)
T ss_dssp             EEEEEETTEEEEEETTTT------EEEECCS-------SCSSCSEEEE----CTTCCEEEEEEC-SSCEEEEESS-----
T ss_pred             ceEEEECCEEEEEcCCCC------EEEEEEC-------CCCcEEeEEC----CCCcceeEEEEe-CCEEEEEEcc-----
Confidence            567777889999998643      2778888       3443322111    122223334444 4499998553     


Q ss_pred             cccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceE-Eecccc
Q 016774          176 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWV-QIPYEL  254 (383)
Q Consensus       176 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~-~i~~~~  254 (383)
                       .+.+++||+++.      +.+.  ..+.+-.+..++.. ++.+|+.-|.+       .++++|+++  .+-. .++   
T Consensus       115 -~~~v~V~D~~Tl------~~~~--ti~~~~eGwGLt~D-g~~L~vSdGs~-------~l~~iDp~T--~~v~~~I~---  172 (268)
T 3nok_A          115 -EGLLFTWSGMPP------QRER--TTRYSGEGWGLCYW-NGKLVRSDGGT-------MLTFHEPDG--FALVGAVQ---  172 (268)
T ss_dssp             -SCEEEEEETTTT------EEEE--EEECSSCCCCEEEE-TTEEEEECSSS-------EEEEECTTT--CCEEEEEE---
T ss_pred             -CCEEEEEECCcC------cEEE--EEeCCCceeEEecC-CCEEEEECCCC-------EEEEEcCCC--CeEEEEEE---
Confidence             356999999875      4343  11112234455555 58899887632       699999987  4432 231   


Q ss_pred             cCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccC----C-
Q 016774          255 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE----G-  329 (383)
Q Consensus       255 ~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~-  329 (383)
                         -...+.+...-.-....+++||+-- .     ..+++.++|+++...               -.|-.+...    . 
T Consensus       173 ---V~~~g~~v~~lNeLe~~dG~lyanv-w-----~s~~I~vIDp~TG~V---------------~~~Idl~~L~~~~~~  228 (268)
T 3nok_A          173 ---VKLRGQPVELINELECANGVIYANI-W-----HSSDVLEIDPATGTV---------------VGVIDASALTRAVAG  228 (268)
T ss_dssp             ---CEETTEECCCEEEEEEETTEEEEEE-T-----TCSEEEEECTTTCBE---------------EEEEECHHHHHHHTT
T ss_pred             ---eCCCCcccccccccEEeCCEEEEEE-C-----CCCeEEEEeCCCCcE---------------EEEEECCCCcccccc
Confidence               0111111111111122577877422 1     145789999885431               123222210    0 


Q ss_pred             -CCCCCccceeeeecCCCcEEEEEcCc
Q 016774          330 -YKPNCRSFHRACPDYSGRYLYVFGGM  355 (383)
Q Consensus       330 -~~p~~r~~~~~~~~~~~~~l~v~GG~  355 (383)
                       ..+..-.--+.+....++.|||.|=.
T Consensus       229 ~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          229 QVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             TCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             cccCcCCceEEEEEcCCCCEEEEeCCC
Confidence             01111223466667778899999965

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.98  E-value=0.81  Score=40.79  Aligned_cols=165  Identities=8%  Similarity=-0.038  Sum_probs=89.5

Q ss_pred             CCCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccE-EEccCCCCCCCccccceeEEECCcEEEEEc
Q 016774           90 PSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSW-RLLDVGSIAPPARGAHAACCIDNRKMVIHA  168 (383)
Q Consensus        90 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W-~~~~~~~~~p~~r~~~~~~~~~~~~i~v~G  168 (383)
                      +.....+.++..++++|+....      .+.+.++|+       .+.+- .++..   ...|+   ..+...++++|+..
T Consensus        41 ~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~-------~t~~~~~~i~~---~~~p~---~i~~~~~g~lyv~~  101 (328)
T 3dsm_A           41 KLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDI-------NTFKEVGRITG---FTSPR---YIHFLSDEKAYVTQ  101 (328)
T ss_dssp             CCBSCEEEEEEETTEEEEEEGG------GTEEEEEET-------TTCCEEEEEEC---CSSEE---EEEEEETTEEEEEE
T ss_pred             ccCccceEEEEECCEEEEEEcC------CCEEEEEEC-------cccEEEEEcCC---CCCCc---EEEEeCCCeEEEEE
Confidence            3445556777889999998753      235888998       45554 23321   22332   33442445899976


Q ss_pred             ccCCCCCcccceEEEeccCCcccCceE-EcccCCCC-CCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccc
Q 016774          169 GIGLYGLRLGDTWVLELSENFCFGSWQ-QLVTHPSP-PARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFK  246 (383)
Q Consensus       169 G~~~~~~~~~~~~~~d~~~~~~~~~W~-~~~~~~~p-~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~  246 (383)
                      ..      .+.+.++|+.+.    +-. .++.+... ....-+.++. .++++|+..-.     ..+.|.++|+++  .+
T Consensus       102 ~~------~~~v~~iD~~t~----~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~-----~~~~v~viD~~t--~~  163 (328)
T 3dsm_A          102 IW------DYRIFIINPKTY----EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS-----YQNRILKIDTET--DK  163 (328)
T ss_dssp             BS------CSEEEEEETTTT----EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECT-----TCCEEEEEETTT--TE
T ss_pred             CC------CCeEEEEECCCC----eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCC-----CCCEEEEEECCC--Ce
Confidence            42      256899999886    433 22221200 0001123334 46889888421     123699999988  55


Q ss_pred             eEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCC----CCcEEEEEcCC
Q 016774          247 WVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRR----KDDFWVLDTKA  301 (383)
Q Consensus       247 W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~----~~~~~~~d~~~  301 (383)
                      ....-     ..+..|     +.+....++++|+..-.......    .+.++++|+.+
T Consensus       164 ~~~~i-----~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          164 VVDEL-----TIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET  212 (328)
T ss_dssp             EEEEE-----ECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred             EEEEE-----EcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC
Confidence            43321     112222     12333356888877543211111    25799999873

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.21  E-value=5.2  Score=40.27  Aligned_cols=138  Identities=8%  Similarity=0.001  Sum_probs=72.8

Q ss_pred             ceeeeecccccCCcccccEEEccCCCCCCC-ccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc
Q 016774          120 DTWIGQIACHENLGITLSWRLLDVGSIAPP-ARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV  198 (383)
Q Consensus       120 ~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~  198 (383)
                      .+++||.       .+.+|.........+. ...-.+.+...++.+++.. . .     .-+++||++++    +++...
T Consensus       470 Gl~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~-----~Gl~~~~~~~~----~~~~~~  531 (781)
T 3v9f_A          470 GVFVIDL-------ASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-F-G-----GGVGIYTPDMQ----LVRKFN  531 (781)
T ss_dssp             EEEEEES-------SSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-S-S-----SCEEEECTTCC----EEEEEC
T ss_pred             ceEEEeC-------CCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-c-C-----CCEEEEeCCCC----eEEEcc
Confidence            4888988       4666665542110111 1112233333455677743 1 1     23899999887    777765


Q ss_pred             c-CCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccE-EEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCC
Q 016774          199 T-HPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDV-WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGG  276 (383)
Q Consensus       199 ~-~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v-~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~  276 (383)
                      . ..+|.. ...++....++.|++....        .+ ++||..+  .+++...     ....+|.... .+++...++
T Consensus       532 ~~~~l~~~-~i~~i~~d~~g~lWi~T~~--------Glv~~~d~~~--~~~~~~~-----~~~gl~~~~i-~~i~~d~~g  594 (781)
T 3v9f_A          532 QYEGFCSN-TINQIYRSSKGQMWLATGE--------GLVCFPSARN--FDYQVFQ-----RKEGLPNTHI-RAISEDKNG  594 (781)
T ss_dssp             TTTTCSCS-CEEEEEECTTSCEEEEETT--------EEEEESCTTT--CCCEEEC-----GGGTCSCCCC-CEEEECSSS
T ss_pred             CCCCCCCC-eeEEEEECCCCCEEEEECC--------CceEEECCCC--CcEEEcc-----ccCCCCCceE-EEEEECCCC
Confidence            2 122222 1223333344667764321        36 8899888  7787764     2233444433 334432467


Q ss_pred             EEEEEcCcCCCCCCCCcEEEEEcC
Q 016774          277 RVLIYGGEDSARRRKDDFWVLDTK  300 (383)
Q Consensus       277 ~l~i~GG~~~~~~~~~~~~~~d~~  300 (383)
                      .|++.+ ..       .+.+||++
T Consensus       595 ~lW~~t-~~-------Gl~~~~~~  610 (781)
T 3v9f_A          595 NIWAST-NT-------GISCYITS  610 (781)
T ss_dssp             CEEEEC-SS-------CEEEEETT
T ss_pred             CEEEEc-CC-------ceEEEECC
Confidence            777764 22       37888887

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=93.46  E-value=4.5  Score=36.94  Aligned_cols=109  Identities=9%  Similarity=-0.063  Sum_probs=52.2

Q ss_pred             CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCC--cccc
Q 016774          102 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGL--RLGD  179 (383)
Q Consensus       102 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~--~~~~  179 (383)
                      ++.+|+.++..      ..+.++|+       .+.+......     .......++...++..+++++......  .-..
T Consensus       223 ~~~l~~~~~~~------~~i~~~d~-------~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~  284 (433)
T 3bws_A          223 RDLVYCSNWIS------EDISVIDR-------KTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGR  284 (433)
T ss_dssp             TTEEEEEETTT------TEEEEEET-------TTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEE
T ss_pred             CCEEEEEecCC------CcEEEEEC-------CCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccccCCCe
Confidence            34577766532      25888998       3444333221     111123334444444555554322211  1346


Q ss_pred             eEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCC-EEEEEcccCCCCCccccEEEEEccc
Q 016774          180 TWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGN-RTVLFGGRGVGYEVLNDVWFLDVYE  242 (383)
Q Consensus       180 ~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~v~~~~~~~  242 (383)
                      ++++|+.+.    +-....  ..+.  ....++...++ .+++.++.+      ..+.+||+.+
T Consensus       285 i~~~d~~~~----~~~~~~--~~~~--~~~~~~~~~~g~~l~~~~~~~------~~v~v~d~~~  334 (433)
T 3bws_A          285 LGIYSMDKE----KLIDTI--GPPG--NKRHIVSGNTENKIYVSDMCC------SKIEVYDLKE  334 (433)
T ss_dssp             EEEEETTTT----EEEEEE--EEEE--CEEEEEECSSTTEEEEEETTT------TEEEEEETTT
T ss_pred             EEEEECCCC----cEEeec--cCCC--CcceEEECCCCCEEEEEecCC------CEEEEEECCC
Confidence            889999876    332222  1111  11122222233 577765543      2589999886

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=93.09  E-value=4.1  Score=36.55  Aligned_cols=142  Identities=9%  Similarity=0.053  Sum_probs=70.0

Q ss_pred             EEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCc-EEEEEcccCCCCCcccceEE
Q 016774          104 CLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNR-KMVIHAGIGLYGLRLGDTWV  182 (383)
Q Consensus       104 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~  182 (383)
                      .+|+.|+.+      +.+.++|+       .+.+-.......     ....+++...++ .+|+.++.+      ..+.+
T Consensus         3 ~l~vs~~~d------~~v~v~d~-------~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~d------~~i~v   58 (391)
T 1l0q_A            3 FAYIANSES------DNISVIDV-------TSNKVTATIPVG-----SNPMGAVISPDGTKVYVANAHS------NDVSI   58 (391)
T ss_dssp             EEEEEETTT------TEEEEEET-------TTTEEEEEEECS-----SSEEEEEECTTSSEEEEEEGGG------TEEEE
T ss_pred             EEEEEcCCC------CEEEEEEC-------CCCeEEEEeecC-----CCcceEEECCCCCEEEEECCCC------CeEEE
Confidence            467777643      25888888       344333221111     112334444343 566766532      46899


Q ss_pred             EeccCCcccCceEEcccCCCCCCCCCceEEEEcCCE-EEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCC
Q 016774          183 LELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGF  261 (383)
Q Consensus       183 ~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~  261 (383)
                      +|+.++    +....-  ....  .-.++....+++ |++.+..+      ..|+++|+.+  .+-....       . .
T Consensus        59 ~d~~~~----~~~~~~--~~~~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~--~~~~~~~-------~-~  114 (391)
T 1l0q_A           59 IDTATN----NVIATV--PAGS--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTS--NTVAGTV-------K-T  114 (391)
T ss_dssp             EETTTT----EEEEEE--ECSS--SEEEEEECTTSSEEEEEETTT------TEEEEEETTT--TEEEEEE-------E-C
T ss_pred             EECCCC----eEEEEE--ECCC--CccceEECCCCCEEEEEECCC------CEEEEEECCC--CeEEEEE-------e-C
Confidence            999876    433322  1111  222333333344 44444331      3599999987  5443331       0 0


Q ss_pred             CCCceeeEEEEEcCC-EEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          262 SLPRVGHSATLILGG-RVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       262 p~~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                      .  ..-.++....++ .+++.++.+      ..++++|+.+
T Consensus       115 ~--~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~  147 (391)
T 1l0q_A          115 G--KSPLGLALSPDGKKLYVTNNGD------KTVSVINTVT  147 (391)
T ss_dssp             S--SSEEEEEECTTSSEEEEEETTT------TEEEEEETTT
T ss_pred             C--CCcceEEECCCCCEEEEEeCCC------CEEEEEECCC
Confidence            1  111233322344 466776543      3588999873

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=92.84  E-value=5.5  Score=36.29  Aligned_cols=156  Identities=8%  Similarity=-0.078  Sum_probs=74.5

Q ss_pred             CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCcc-ccceeEEECCcEEEEEcccCCCCCcccce
Q 016774          102 GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPAR-GAHAACCIDNRKMVIHAGIGLYGLRLGDT  180 (383)
Q Consensus       102 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r-~~~~~~~~~~~~i~v~GG~~~~~~~~~~~  180 (383)
                      ++++++.++..      ..+.++|+       .+.+.............. .-.+++...++.+++.++.      -..+
T Consensus       133 ~~~~~~~~~~~------~~i~~~d~-------~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~------d~~v  193 (433)
T 3bws_A          133 NTRLAIPLLED------EGMDVLDI-------NSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ------ANAV  193 (433)
T ss_dssp             SSEEEEEBTTS------SSEEEEET-------TTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG------GTEE
T ss_pred             CCeEEEEeCCC------CeEEEEEC-------CCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC------CCEE
Confidence            56677777643      24888998       355544432210000000 1112233345578777764      2458


Q ss_pred             EEEeccCCcccCceEEcccCCCCCCCCCceEEEEcC-CEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCC
Q 016774          181 WVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGG-NRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPA  259 (383)
Q Consensus       181 ~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~-~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~  259 (383)
                      .++|+++.    +....-.   .......++....+ +.+|+.++.+      ..|.++|+.+  .+.....        
T Consensus       194 ~~~d~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~--~~~~~~~--------  250 (433)
T 3bws_A          194 HVFDLKTL----AYKATVD---LTGKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKT--KLEIRKT--------  250 (433)
T ss_dssp             EEEETTTC----CEEEEEE---CSSSSEEEEEEETTTTEEEEEETTT------TEEEEEETTT--TEEEEEC--------
T ss_pred             EEEECCCc----eEEEEEc---CCCCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCC--CcEEEEe--------
Confidence            89998875    3322211   11111223333333 3455555442      2599999987  5443331        


Q ss_pred             CCCCCceeeEEEEEcCCEEEEEcCcCCCCC--CCCcEEEEEcCC
Q 016774          260 GFSLPRVGHSATLILGGRVLIYGGEDSARR--RKDDFWVLDTKA  301 (383)
Q Consensus       260 ~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~--~~~~~~~~d~~~  301 (383)
                        +....-.++....++..+++++......  .-..+.++|+.+
T Consensus       251 --~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~  292 (433)
T 3bws_A          251 --DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK  292 (433)
T ss_dssp             --CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred             --cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence              1111223333324565555555432211  123688999873

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=92.77  E-value=5  Score=35.62  Aligned_cols=200  Identities=12%  Similarity=0.060  Sum_probs=97.4

Q ss_pred             cceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEE
Q 016774           21 VSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVV  100 (383)
Q Consensus        21 ~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~  100 (383)
                      .+|+.+......   + .....++....+.+|+.|-  .     .  .++.. .+  ...+|+++....+.+-....++.
T Consensus        66 ~tW~~~~~~~~~---~-~~~~~~i~~~~~~~~~~g~--~-----g--~i~~S-~D--gG~tW~~~~~~~~~~~~~~~i~~  129 (327)
T 2xbg_A           66 QTWEPRTLVLDH---S-DYRFNSVSFQGNEGWIVGE--P-----P--IMLHT-TD--GGQSWSQIPLDPKLPGSPRLIKA  129 (327)
T ss_dssp             SSCEECCCCCSC---C-CCEEEEEEEETTEEEEEEE--T-----T--EEEEE-SS--TTSSCEECCCCTTCSSCEEEEEE
T ss_pred             CCCeECCCCCCC---C-CccEEEEEecCCeEEEEEC--C-----C--eEEEE-CC--CCCCceECccccCCCCCeEEEEE
Confidence            478887543211   1 1112333334668887652  1     1  22322 11  34599998632222222233443


Q ss_pred             -ECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccc
Q 016774          101 -IGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGD  179 (383)
Q Consensus       101 -~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~  179 (383)
                       -++++|+.|..   +    .+++-+=       .-.+|+.+...    .+...+.++...++.+++.|-   .    ..
T Consensus       130 ~~~~~~~~~~~~---g----~v~~S~D-------gG~tW~~~~~~----~~~~~~~~~~~~~~~~~~~g~---~----G~  184 (327)
T 2xbg_A          130 LGNGSAEMITNV---G----AIYRTKD-------SGKNWQALVQE----AIGVMRNLNRSPSGEYVAVSS---R----GS  184 (327)
T ss_dssp             EETTEEEEEETT---C----CEEEESS-------TTSSEEEEECS----CCCCEEEEEECTTSCEEEEET---T----SS
T ss_pred             ECCCCEEEEeCC---c----cEEEEcC-------CCCCCEEeecC----CCcceEEEEEcCCCcEEEEEC---C----Cc
Confidence             35678887642   1    2433211       25689987642    122334444445556776652   1    23


Q ss_pred             eEEEecc-CCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcc-cCccceEEecccccCC
Q 016774          180 TWVLELS-ENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVY-EGFFKWVQIPYELQNI  257 (383)
Q Consensus       180 ~~~~d~~-~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~-~~~~~W~~i~~~~~~~  257 (383)
                      +++-+-. ..    .|+.+..   +.+...+.++...++.+|+.+...       .+++.+.+ .  .+|+.+.      
T Consensus       185 ~~~S~d~gG~----tW~~~~~---~~~~~~~~~~~~~~g~~~~~~~~G-------~~~~s~~D~G--~tW~~~~------  242 (327)
T 2xbg_A          185 FYSTWEPGQT----AWEPHNR---TTSRRLHNMGFTPDGRLWMIVNGG-------KIAFSDPDNS--ENWGELL------  242 (327)
T ss_dssp             EEEEECTTCS----SCEEEEC---CSSSCEEEEEECTTSCEEEEETTT-------EEEEEETTEE--EEECCCB------
T ss_pred             EEEEeCCCCC----ceeECCC---CCCCccceeEECCCCCEEEEeCCc-------eEEEecCCCC--CeeEecc------
Confidence            5554322 34    8998862   333444555555567788776431       24443222 4  7898873      


Q ss_pred             CCCCCCCceeeEEEEEcCCEEEEEcC
Q 016774          258 PAGFSLPRVGHSATLILGGRVLIYGG  283 (383)
Q Consensus       258 ~~~~p~~r~~~~~~~~~~~~l~i~GG  283 (383)
                      ...++.....++.....++.+|+.|+
T Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          243 SPLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             CTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             CCcccCCcceEEEEecCCCEEEEEeC
Confidence            11122222223333224677888876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=92.37  E-value=5.9  Score=35.53  Aligned_cols=162  Identities=15%  Similarity=0.163  Sum_probs=86.5

Q ss_pred             ceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCC-C-----CCCcceeEEEECCEEEEEcCccCCCC
Q 016774           43 SLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGI-P-----SGRFGHTCVVIGDCLVLFGGINDRGN  116 (383)
Q Consensus        43 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-p-----~~r~~~~~~~~~~~iyv~GG~~~~~~  116 (383)
                      +.++.++++|+...       ...++.++..+   ....|+.-.... +     ......+.+..+++||+....     
T Consensus        48 ~p~v~~~~v~~~~~-------~g~v~a~d~~t---G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-----  112 (376)
T 3q7m_A           48 HPALADNVVYAADR-------AGLVKALNADD---GKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-----  112 (376)
T ss_dssp             CCEEETTEEEEECT-------TSEEEEEETTT---CCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-----
T ss_pred             ccEEECCEEEEEcC-------CCeEEEEEccC---CceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-----
Confidence            45557889888754       13667777643   234787543111 0     223334555678888885431     


Q ss_pred             CccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEE
Q 016774          117 RHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQ  196 (383)
Q Consensus       117 ~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~  196 (383)
                        ..++.+|..     +-+..|+.-....      .....+. .++.+|+...       ...++.+|..++  +..|+.
T Consensus       113 --g~l~a~d~~-----tG~~~W~~~~~~~------~~~~p~~-~~~~v~v~~~-------~g~l~~~d~~tG--~~~W~~  169 (376)
T 3q7m_A          113 --AQVYALNTS-----DGTVAWQTKVAGE------ALSRPVV-SDGLVLIHTS-------NGQLQALNEADG--AVKWTV  169 (376)
T ss_dssp             --SEEEEEETT-----TCCEEEEEECSSC------CCSCCEE-ETTEEEEECT-------TSEEEEEETTTC--CEEEEE
T ss_pred             --CEEEEEECC-----CCCEEEEEeCCCc------eEcCCEE-ECCEEEEEcC-------CCeEEEEECCCC--cEEEEE
Confidence              358899982     1245687643211      1112233 3447777432       236999998876  345876


Q ss_pred             cccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774          197 LVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI  250 (383)
Q Consensus       197 ~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i  250 (383)
                      ....+....+...+.+.. ++.+|+ |...      ..++.+|+.++...|+.-
T Consensus       170 ~~~~~~~~~~~~~~~~~~-~~~v~~-g~~~------g~l~~~d~~tG~~~w~~~  215 (376)
T 3q7m_A          170 NLDMPSLSLRGESAPTTA-FGAAVV-GGDN------GRVSAVLMEQGQMIWQQR  215 (376)
T ss_dssp             ECCC-----CCCCCCEEE-TTEEEE-CCTT------TEEEEEETTTCCEEEEEE
T ss_pred             eCCCCceeecCCCCcEEE-CCEEEE-EcCC------CEEEEEECCCCcEEEEEe
Confidence            542111111222233334 466555 4321      258999998765778765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=92.35  E-value=5.5  Score=35.11  Aligned_cols=32  Identities=13%  Similarity=0.086  Sum_probs=17.9

Q ss_pred             eEEEEcCCEEEEEcccCCCCCccccEEEEEcc-cCccceEE
Q 016774          210 SLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVY-EGFFKWVQ  249 (383)
Q Consensus       210 ~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~-~~~~~W~~  249 (383)
                      +++.-.++++|+.+...      +.+++|++. .  .+...
T Consensus       145 ~~~~spdg~l~v~~~~~------~~v~~~~~~~~--g~~~~  177 (347)
T 3hfq_A          145 YTDLTPDNRLAVIDLGS------DKVYVYNVSDA--GQLSE  177 (347)
T ss_dssp             EEEECTTSCEEEEETTT------TEEEEEEECTT--SCEEE
T ss_pred             EEEECCCCcEEEEeCCC------CEEEEEEECCC--CcEEE
Confidence            34444456666654332      258888887 4  44443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=92.30  E-value=6  Score=35.43  Aligned_cols=143  Identities=11%  Similarity=0.050  Sum_probs=70.6

Q ss_pred             CEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCc-EEEEEcccCCCCCcccceE
Q 016774          103 DCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNR-KMVIHAGIGLYGLRLGDTW  181 (383)
Q Consensus       103 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~  181 (383)
                      ..+|+.|+..      ..+.++|+       .+.+.......+   .  .-.+++...++ .+++.+..      -..++
T Consensus        44 ~~l~~~~~~d------~~i~v~d~-------~~~~~~~~~~~~---~--~v~~~~~spdg~~l~~~~~~------~~~v~   99 (391)
T 1l0q_A           44 TKVYVANAHS------NDVSIIDT-------ATNNVIATVPAG---S--SPQGVAVSPDGKQVYVTNMA------SSTLS   99 (391)
T ss_dssp             SEEEEEEGGG------TEEEEEET-------TTTEEEEEEECS---S--SEEEEEECTTSSEEEEEETT------TTEEE
T ss_pred             CEEEEECCCC------CeEEEEEC-------CCCeEEEEEECC---C--CccceEECCCCCEEEEEECC------CCEEE
Confidence            3477776543      25888888       344443322211   1  22233333333 45555432      24589


Q ss_pred             EEeccCCcccCceEEcccCCCCCCCCCceEEEEcCC-EEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCC
Q 016774          182 VLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGN-RTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAG  260 (383)
Q Consensus       182 ~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~  260 (383)
                      ++|+.++    +......  .  .....++....++ .+++.++.+      ..|+++|+.+  .+.....     ..+ 
T Consensus       100 v~d~~~~----~~~~~~~--~--~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~--~~~~~~~-----~~~-  157 (391)
T 1l0q_A          100 VIDTTSN----TVAGTVK--T--GKSPLGLALSPDGKKLYVTNNGD------KTVSVINTVT--KAVINTV-----SVG-  157 (391)
T ss_dssp             EEETTTT----EEEEEEE--C--SSSEEEEEECTTSSEEEEEETTT------TEEEEEETTT--TEEEEEE-----ECC-
T ss_pred             EEECCCC----eEEEEEe--C--CCCcceEEECCCCCEEEEEeCCC------CEEEEEECCC--CcEEEEE-----ecC-
Confidence            9999887    4333221  1  1112233333334 465665542      2699999987  5544331     011 


Q ss_pred             CCCCceeeEEEEEcCC-EEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          261 FSLPRVGHSATLILGG-RVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       261 ~p~~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                          ..-.++....++ .+++.++.+      ..+.++|+.+
T Consensus       158 ----~~~~~~~~~~dg~~l~~~~~~~------~~v~~~d~~~  189 (391)
T 1l0q_A          158 ----RSPKGIAVTPDGTKVYVANFDS------MSISVIDTVT  189 (391)
T ss_dssp             ----SSEEEEEECTTSSEEEEEETTT------TEEEEEETTT
T ss_pred             ----CCcceEEECCCCCEEEEEeCCC------CEEEEEECCC
Confidence                111223322344 566666553      3488999873

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=91.60  E-value=7.3  Score=34.92  Aligned_cols=193  Identities=13%  Similarity=0.144  Sum_probs=100.6

Q ss_pred             cceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccce
Q 016774           42 HSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDT  121 (383)
Q Consensus        42 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  121 (383)
                      ...+..++.+|+...       ...++.++..+   ....|+.-...    ....+.+..++.+|+....       ..+
T Consensus        97 ~~~~~~~~~v~v~~~-------~g~l~a~d~~t---G~~~W~~~~~~----~~~~~p~~~~~~v~v~~~~-------g~l  155 (376)
T 3q7m_A           97 GGVTVSGGHVYIGSE-------KAQVYALNTSD---GTVAWQTKVAG----EALSRPVVSDGLVLIHTSN-------GQL  155 (376)
T ss_dssp             EEEEEETTEEEEEET-------TSEEEEEETTT---CCEEEEEECSS----CCCSCCEEETTEEEEECTT-------SEE
T ss_pred             cCceEeCCEEEEEcC-------CCEEEEEECCC---CCEEEEEeCCC----ceEcCCEEECCEEEEEcCC-------CeE
Confidence            334455778887543       14677787744   23478754221    1122345567778775431       258


Q ss_pred             eeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCC
Q 016774          122 WIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHP  201 (383)
Q Consensus       122 ~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~  201 (383)
                      +.+|..     +.+..|+.-.... ....+...+.+.. ++.+|+ |..      -..++.+|+.++  +..|+...  .
T Consensus       156 ~~~d~~-----tG~~~W~~~~~~~-~~~~~~~~~~~~~-~~~v~~-g~~------~g~l~~~d~~tG--~~~w~~~~--~  217 (376)
T 3q7m_A          156 QALNEA-----DGAVKWTVNLDMP-SLSLRGESAPTTA-FGAAVV-GGD------NGRVSAVLMEQG--QMIWQQRI--S  217 (376)
T ss_dssp             EEEETT-----TCCEEEEEECCC------CCCCCCEEE-TTEEEE-CCT------TTEEEEEETTTC--CEEEEEEC--C
T ss_pred             EEEECC-----CCcEEEEEeCCCC-ceeecCCCCcEEE-CCEEEE-EcC------CCEEEEEECCCC--cEEEEEec--c
Confidence            889972     1245587643211 1111112233333 446666 321      235899998765  45677553  1


Q ss_pred             CCCCC--------CCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEE
Q 016774          202 SPPAR--------SGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI  273 (383)
Q Consensus       202 ~p~~r--------~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~  273 (383)
                      .|...        .....+.. ++.+|+.+..       ..++.+|+.++...|+.-.       .     . ..+.+ .
T Consensus       218 ~~~~~~~~~~~~~~~~~p~~~-~~~v~~~~~~-------g~l~~~d~~tG~~~w~~~~-------~-----~-~~~~~-~  275 (376)
T 3q7m_A          218 QATGSTEIDRLSDVDTTPVVV-NGVVFALAYN-------GNLTALDLRSGQIMWKREL-------G-----S-VNDFI-V  275 (376)
T ss_dssp             C-----------CCCCCCEEE-TTEEEEECTT-------SCEEEEETTTCCEEEEECC-------C-----C-EEEEE-E
T ss_pred             cCCCCcccccccccCCCcEEE-CCEEEEEecC-------cEEEEEECCCCcEEeeccC-------C-----C-CCCce-E
Confidence            11111        11222333 5777765421       2589999987556787641       1     1 12233 3


Q ss_pred             cCCEEEEEcCcCCCCCCCCcEEEEEcCCC
Q 016774          274 LGGRVLIYGGEDSARRRKDDFWVLDTKAI  302 (383)
Q Consensus       274 ~~~~l~i~GG~~~~~~~~~~~~~~d~~~~  302 (383)
                      .++.+|+....       ..++.+|..+.
T Consensus       276 ~~~~l~~~~~~-------g~l~~~d~~tG  297 (376)
T 3q7m_A          276 DGNRIYLVDQN-------DRVMALTIDGG  297 (376)
T ss_dssp             ETTEEEEEETT-------CCEEEEETTTC
T ss_pred             ECCEEEEEcCC-------CeEEEEECCCC
Confidence            67888886532       35889998743

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=91.45  E-value=7.1  Score=34.48  Aligned_cols=67  Identities=15%  Similarity=0.030  Sum_probs=36.2

Q ss_pred             CCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcC---CEEEEEcCcCCCCCCCC
Q 016774          216 GNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILG---GRVLIYGGEDSARRRKD  292 (383)
Q Consensus       216 ~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~---~~l~i~GG~~~~~~~~~  292 (383)
                      ++.+++.|+.+.      .|.+||+.+....+..+..     ......+ . .++....+   +.+++.|+.++      
T Consensus       171 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~-----~~~h~~~-v-~~~~~sp~~~~~~~l~s~~~dg------  231 (379)
T 3jrp_A          171 ESRKFVTGGADN------LVKIWKYNSDAQTYVLEST-----LEGHSDW-V-RDVAWSPTVLLRSYLASVSQDR------  231 (379)
T ss_dssp             TTCEEEEEETTS------CEEEEEEETTTTEEEEEEE-----ECCCSSC-E-EEEEECCCCSSSEEEEEEETTS------
T ss_pred             CCCEEEEEeCCC------eEEEEEecCCCcceeeEEE-----EecccCc-E-eEEEECCCCCCCCeEEEEeCCC------
Confidence            366777877642      4888888762233544420     0111111 1 22222245   68888888765      


Q ss_pred             cEEEEEcCC
Q 016774          293 DFWVLDTKA  301 (383)
Q Consensus       293 ~~~~~d~~~  301 (383)
                      .+.++|+.+
T Consensus       232 ~i~iwd~~~  240 (379)
T 3jrp_A          232 TCIIWTQDN  240 (379)
T ss_dssp             CEEEEEESS
T ss_pred             EEEEEeCCC
Confidence            377788763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=90.04  E-value=9  Score=33.29  Aligned_cols=29  Identities=14%  Similarity=0.062  Sum_probs=16.5

Q ss_pred             EEEEcCCE-EEEEcccCCCCCccccEEEEEcccCccce
Q 016774          211 LTRIGGNR-TVLFGGRGVGYEVLNDVWFLDVYEGFFKW  247 (383)
Q Consensus       211 ~~~~~~~~-i~v~GG~~~~~~~~~~v~~~~~~~~~~~W  247 (383)
                      +..-.+++ +|+.+...      +.+.+||+.+  .+.
T Consensus       181 ~~~spdg~~l~v~~~~~------~~v~v~d~~~--~~~  210 (331)
T 3u4y_A          181 ITFTPDGNFAFVANLIG------NSIGILETQN--PEN  210 (331)
T ss_dssp             EEECTTSSEEEEEETTT------TEEEEEECSS--TTS
T ss_pred             eEECCCCCEEEEEeCCC------CeEEEEECCC--Ccc
Confidence            33333444 66654332      3589999987  553

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=89.45  E-value=17  Score=36.39  Aligned_cols=66  Identities=14%  Similarity=0.007  Sum_probs=35.5

Q ss_pred             CEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcC---CEEEEEcCcCCCCCCCCc
Q 016774          217 NRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILG---GRVLIYGGEDSARRRKDD  293 (383)
Q Consensus       217 ~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~---~~l~i~GG~~~~~~~~~~  293 (383)
                      +.+++.|+.+.      .|.+||+.++...+..+.     .......+  -.++....+   +.+++.||.++      .
T Consensus       170 ~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~-----~~~~h~~~--V~~l~~sp~~~~~~~l~s~s~Dg------~  230 (753)
T 3jro_A          170 SRKFVTGGADN------LVKIWKYNSDAQTYVLES-----TLEGHSDW--VRDVAWSPTVLLRSYLASVSQDR------T  230 (753)
T ss_dssp             GCCEEEEETTS------CEEEEEEETTTTEEEEEE-----EECCCSSC--EEEEEECCCCSSSEEEEEEESSS------C
T ss_pred             CCEEEEEECCC------eEEEEeccCCcccceeee-----eecCCCCc--EEEEEeccCCCCCCEEEEEecCC------E
Confidence            56677777642      488888876323344332     00111111  122222245   78888888765      3


Q ss_pred             EEEEEcCC
Q 016774          294 FWVLDTKA  301 (383)
Q Consensus       294 ~~~~d~~~  301 (383)
                      +.++|+.+
T Consensus       231 I~iwd~~~  238 (753)
T 3jro_A          231 CIIWTQDN  238 (753)
T ss_dssp             EEEEEESS
T ss_pred             EEEecCCC
Confidence            77888764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=89.41  E-value=9.3  Score=32.93  Aligned_cols=112  Identities=11%  Similarity=0.078  Sum_probs=65.0

Q ss_pred             ceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccc
Q 016774          154 HAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLN  233 (383)
Q Consensus       154 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~  233 (383)
                      |......++.+|+..|..    -.+.+..+|+.++    +=...-  +.+....+...+.. ++++|+..-..      +
T Consensus        24 ~Gl~~~~dg~Lyvstg~~----~~s~v~~iD~~tg----~v~~~i--~l~~~~fgeGi~~~-g~~lyv~t~~~------~   86 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLY----GRSSVRQVALQTG----KVENIH--KMDDSYFGEGLTLL-NEKLYQVVWLK------N   86 (266)
T ss_dssp             EEEEECSTTEEEEEECST----TTCEEEEEETTTC----CEEEEE--ECCTTCCEEEEEEE-TTEEEEEETTC------S
T ss_pred             ccEEEeCCCeEEEECCCC----CCCEEEEEECCCC----CEEEEE--ecCCCcceEEEEEe-CCEEEEEEecC------C
Confidence            455555547999987742    1366999999987    432221  23333333445555 58999886542      3


Q ss_pred             cEEEEEcccCccc-eEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCC
Q 016774          234 DVWFLDVYEGFFK-WVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI  302 (383)
Q Consensus       234 ~v~~~~~~~~~~~-W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~  302 (383)
                      .+++||+.+  .+ =.+++      .+ .|.   +..... .++++|+.-|       .+.++.+|+++.
T Consensus        87 ~v~viD~~t--~~v~~~i~------~g-~~~---g~glt~-Dg~~l~vs~g-------s~~l~viD~~t~  136 (266)
T 2iwa_A           87 IGFIYDRRT--LSNIKNFT------HQ-MKD---GWGLAT-DGKILYGSDG-------TSILYEIDPHTF  136 (266)
T ss_dssp             EEEEEETTT--TEEEEEEE------CC-SSS---CCEEEE-CSSSEEEECS-------SSEEEEECTTTC
T ss_pred             EEEEEECCC--CcEEEEEE------CC-CCC---eEEEEE-CCCEEEEECC-------CCeEEEEECCCC
Confidence            699999876  32 12232      11 122   223332 5667887654       246899998854

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=89.30  E-value=2.3  Score=36.61  Aligned_cols=107  Identities=10%  Similarity=0.121  Sum_probs=65.4

Q ss_pred             ECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEE
Q 016774          159 IDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFL  238 (383)
Q Consensus       159 ~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~  238 (383)
                      +.++.+|+..|..  +  .+.+.++|++++    +=...-  +++..-.+..+... +++||+.....      +.+++|
T Consensus        50 ~~~~~LyestG~~--g--~S~v~~vD~~Tg----kv~~~~--~l~~~~FgeGit~~-g~~ly~ltw~~------~~v~v~  112 (262)
T 3nol_A           50 YRNGYFYESTGLN--G--RSSIRKVDIESG----KTLQQI--ELGKRYFGEGISDW-KDKIVGLTWKN------GLGFVW  112 (262)
T ss_dssp             EETTEEEEEEEET--T--EEEEEEECTTTC----CEEEEE--ECCTTCCEEEEEEE-TTEEEEEESSS------SEEEEE
T ss_pred             EECCEEEEECCCC--C--CceEEEEECCCC----cEEEEE--ecCCccceeEEEEe-CCEEEEEEeeC------CEEEEE
Confidence            3356999998852  1  357899999987    433322  33433344445666 58999986643      369999


Q ss_pred             EcccCccce-EEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCc
Q 016774          239 DVYEGFFKW-VQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIP  303 (383)
Q Consensus       239 ~~~~~~~~W-~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~  303 (383)
                      |+++  .+- .+++           .+-.+.+.+. .++.||+.-|.       +.++.+|+++..
T Consensus       113 D~~t--~~~~~ti~-----------~~~eG~glt~-dg~~L~~SdGs-------~~i~~iDp~T~~  157 (262)
T 3nol_A          113 NIRN--LRQVRSFN-----------YDGEGWGLTH-NDQYLIMSDGT-------PVLRFLDPESLT  157 (262)
T ss_dssp             ETTT--CCEEEEEE-----------CSSCCCCEEE-CSSCEEECCSS-------SEEEEECTTTCS
T ss_pred             ECcc--CcEEEEEE-----------CCCCceEEec-CCCEEEEECCC-------CeEEEEcCCCCe
Confidence            9987  432 2232           1223334443 56677776542       358999988543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=89.13  E-value=10  Score=32.71  Aligned_cols=151  Identities=11%  Similarity=-0.090  Sum_probs=83.2

Q ss_pred             cceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccce
Q 016774           42 HSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDT  121 (383)
Q Consensus        42 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  121 (383)
                      +.+...++.+|+-.|..      ..+..+|+.+.     +-.+-.  .+..-.+.+++..+++||+....+      +.+
T Consensus        58 qGL~~~~~~Ly~stG~~------g~v~~iD~~Tg-----kv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~------~~v  118 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQ------GTLRQLSLESA-----QPVWME--RLGNIFAEGLASDGERLYQLTWTE------GLL  118 (268)
T ss_dssp             EEEEEETTEEEEEETTT------TEEEECCSSCS-----SCSEEE--ECTTCCEEEEEECSSCEEEEESSS------CEE
T ss_pred             ceEEEECCEEEEEcCCC------CEEEEEECCCC-----cEEeEE--CCCCcceeEEEEeCCEEEEEEccC------CEE
Confidence            45555688999998842      12556666443     111111  233445567888899999986542      368


Q ss_pred             eeeecccccCCcccccEE-EccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccC
Q 016774          122 WIGQIACHENLGITLSWR-LLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTH  200 (383)
Q Consensus       122 ~~~d~~~~~~~~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~  200 (383)
                      ++||.       ++.+-. +++.      +-.+.+.+.. ++.+|+.-|       .+.++.+|+.+..   .-..++..
T Consensus       119 ~V~D~-------~Tl~~~~ti~~------~~eGwGLt~D-g~~L~vSdG-------s~~l~~iDp~T~~---v~~~I~V~  174 (268)
T 3nok_A          119 FTWSG-------MPPQRERTTRY------SGEGWGLCYW-NGKLVRSDG-------GTMLTFHEPDGFA---LVGAVQVK  174 (268)
T ss_dssp             EEEET-------TTTEEEEEEEC------SSCCCCEEEE-TTEEEEECS-------SSEEEEECTTTCC---EEEEEECE
T ss_pred             EEEEC-------CcCcEEEEEeC------CCceeEEecC-CCEEEEECC-------CCEEEEEcCCCCe---EEEEEEeC
Confidence            99998       344433 2222      1223445444 448888754       3569999998851   11222211


Q ss_pred             CCCCCCCC-ceEEEEcCCEEEEEcccCCCCCccccEEEEEccc
Q 016774          201 PSPPARSG-HSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE  242 (383)
Q Consensus       201 ~~p~~r~~-~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~  242 (383)
                      ..+.+... --+... +++||+---      ..++|.+.|+++
T Consensus       175 ~~g~~v~~lNeLe~~-dG~lyanvw------~s~~I~vIDp~T  210 (268)
T 3nok_A          175 LRGQPVELINELECA-NGVIYANIW------HSSDVLEIDPAT  210 (268)
T ss_dssp             ETTEECCCEEEEEEE-TTEEEEEET------TCSEEEEECTTT
T ss_pred             CCCcccccccccEEe-CCEEEEEEC------CCCeEEEEeCCC
Confidence            12222111 113334 577774321      134799999987

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.64  E-value=12  Score=32.98  Aligned_cols=206  Identities=14%  Similarity=0.120  Sum_probs=98.1

Q ss_pred             hhhhhccc--cccceeeeecCCCCCCCCCCCcccceeee-CCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCC
Q 016774           11 LYRQVTQL--ESVSCRNISDADGDLVLPNPRASHSLNFV-SNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNS   87 (383)
Q Consensus        11 ~~~~~~~~--~~~~W~~~~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~   87 (383)
                      +++.+|..  ...+|+.+....       ...-.++... .+.+|+.|-.       .  .++....   ...+|+++..
T Consensus        13 ~~~~~~~s~d~g~~W~~~~~~~-------~~~~~~v~~~~~~~~~~~G~~-------g--~i~~s~D---gG~tW~~~~~   73 (327)
T 2xbg_A           13 VPRGSAIPALDYNPWEAIQLPT-------TATILDMSFIDRHHGWLVGVN-------A--TLMETRD---GGQTWEPRTL   73 (327)
T ss_dssp             -----CCCBCSSCCEEEEECSC-------SSCEEEEEESSSSCEEEEETT-------T--EEEEESS---TTSSCEECCC
T ss_pred             cccceeecCCCCCCceEeecCC-------CCcEEEEEECCCCcEEEEcCC-------C--eEEEeCC---CCCCCeECCC
Confidence            45556643  446899886332       1111222222 4577876531       1  1232211   3348998753


Q ss_pred             CCCC-CCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEE
Q 016774           88 GIPS-GRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVI  166 (383)
Q Consensus        88 ~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v  166 (383)
                      ..+. .....++...++.+|+.|- .  +    .+++-+=       .-.+|+.+......|..  ....+...++.+|+
T Consensus        74 ~~~~~~~~~~~i~~~~~~~~~~g~-~--g----~i~~S~D-------gG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~  137 (327)
T 2xbg_A           74 VLDHSDYRFNSVSFQGNEGWIVGE-P--P----IMLHTTD-------GGQSWSQIPLDPKLPGS--PRLIKALGNGSAEM  137 (327)
T ss_dssp             CCSCCCCEEEEEEEETTEEEEEEE-T--T----EEEEESS-------TTSSCEECCCCTTCSSC--EEEEEEEETTEEEE
T ss_pred             CCCCCCccEEEEEecCCeEEEEEC-C--C----eEEEECC-------CCCCceECccccCCCCC--eEEEEEECCCCEEE
Confidence            2211 2223444455677888752 1  1    2332111       25789997643212221  22333445557887


Q ss_pred             EcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcc-cCcc
Q 016774          167 HAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVY-EGFF  245 (383)
Q Consensus       167 ~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~-~~~~  245 (383)
                      .|..   +    .+++-+=.-.    +|+++..   +.+...+.+....++.+++.|-..       .+++-.-. .  .
T Consensus       138 ~~~~---g----~v~~S~DgG~----tW~~~~~---~~~~~~~~~~~~~~~~~~~~g~~G-------~~~~S~d~gG--~  194 (327)
T 2xbg_A          138 ITNV---G----AIYRTKDSGK----NWQALVQ---EAIGVMRNLNRSPSGEYVAVSSRG-------SFYSTWEPGQ--T  194 (327)
T ss_dssp             EETT---C----CEEEESSTTS----SEEEEEC---SCCCCEEEEEECTTSCEEEEETTS-------SEEEEECTTC--S
T ss_pred             EeCC---c----cEEEEcCCCC----CCEEeec---CCCcceEEEEEcCCCcEEEEECCC-------cEEEEeCCCC--C
Confidence            7641   1    2444322233    8999872   222334455555456676665321       24444322 4  7


Q ss_pred             ceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcC
Q 016774          246 KWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGG  283 (383)
Q Consensus       246 ~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG  283 (383)
                      +|+.+.         .+.+...+.++...++.+|+.+.
T Consensus       195 tW~~~~---------~~~~~~~~~~~~~~~g~~~~~~~  223 (327)
T 2xbg_A          195 AWEPHN---------RTTSRRLHNMGFTPDGRLWMIVN  223 (327)
T ss_dssp             SCEEEE---------CCSSSCEEEEEECTTSCEEEEET
T ss_pred             ceeECC---------CCCCCccceeEECCCCCEEEEeC
Confidence            899984         12233334444435677887764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=88.58  E-value=12  Score=33.33  Aligned_cols=109  Identities=12%  Similarity=0.094  Sum_probs=53.1

Q ss_pred             EECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcC-CEEEEEcccCCCCCccccEE
Q 016774          158 CIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGG-NRTVLFGGRGVGYEVLNDVW  236 (383)
Q Consensus       158 ~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~-~~i~v~GG~~~~~~~~~~v~  236 (383)
                      ...++..++.|+.+      ..+.++|+.++    +-...-  .... ....++....+ +.+++.|+.+.      .|.
T Consensus       147 ~spdg~~l~sgs~d------g~v~iwd~~~~----~~~~~~--~~h~-~~v~~v~~s~~~~~~~~s~~~dg------~v~  207 (357)
T 4g56_B          147 VFSDGTQAVSGGKD------FSVKVWDLSQK----AVLKSY--NAHS-SEVNCVAACPGKDTIFLSCGEDG------RIL  207 (357)
T ss_dssp             ECSSSSEEEEEETT------SCEEEEETTTT----EEEEEE--CCCS-SCEEEEEECTTCSSCEEEEETTS------CEE
T ss_pred             ECCCCCEEEEEeCC------CeEEEEECCCC----cEEEEE--cCCC-CCEEEEEEccCCCceeeeeccCC------ceE
Confidence            34455677777742      34788898876    322221  1111 11112222222 34677777642      478


Q ss_pred             EEEcccCccceEEecccccCCCCCCCCCceeeEEEEE--cCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          237 FLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI--LGGRVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       237 ~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~--~~~~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                      ++|+.+  .+-....        ..........++.+  .++.+++.|+.++      .+.++|+.+
T Consensus       208 ~wd~~~--~~~~~~~--------~~~~~~~~v~~v~~sp~~~~~la~g~~d~------~i~~wd~~~  258 (357)
T 4g56_B          208 LWDTRK--PKPATRI--------DFCASDTIPTSVTWHPEKDDTFACGDETG------NVSLVNIKN  258 (357)
T ss_dssp             ECCTTS--SSCBCBC--------CCTTCCSCEEEEEECTTSTTEEEEEESSS------CEEEEESSC
T ss_pred             EEECCC--Cceeeee--------eeccccccccchhhhhcccceEEEeeccc------ceeEEECCC
Confidence            888876  3322210        01111111122222  2456888887654      378888874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=87.82  E-value=15  Score=33.09  Aligned_cols=135  Identities=11%  Similarity=0.049  Sum_probs=68.9

Q ss_pred             ceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEccc
Q 016774          120 DTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVT  199 (383)
Q Consensus       120 ~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~  199 (383)
                      .++++|+       .+.+........   ....-.+++...++.+++.|+.+      ..+.++|+.+.    +....- 
T Consensus       114 ~v~lw~~-------~~~~~~~~~~~~---~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~----~~~~~~-  172 (401)
T 4aez_A          114 NVYVWNA-------DSGSVSALAETD---ESTYVASVKWSHDGSFLSVGLGN------GLVDIYDVESQ----TKLRTM-  172 (401)
T ss_dssp             EEEEEET-------TTCCEEEEEECC---TTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTC----CEEEEE-
T ss_pred             eEEEeeC-------CCCcEeEeeecC---CCCCEEEEEECCCCCEEEEECCC------CeEEEEECcCC----eEEEEe-
Confidence            4888888       355544433211   11122233444455677777642      35888898876    332222 


Q ss_pred             CCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEE
Q 016774          200 HPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVL  279 (383)
Q Consensus       200 ~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~  279 (383)
                       ..  ....-..+... +.+++.|+.+      ..|.++|+......-..+.        .....  -.++....++.++
T Consensus       173 -~~--~~~~v~~~~~~-~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~--------~~~~~--v~~~~~~~~~~~l  232 (401)
T 4aez_A          173 -AG--HQARVGCLSWN-RHVLSSGSRS------GAIHHHDVRIANHQIGTLQ--------GHSSE--VCGLAWRSDGLQL  232 (401)
T ss_dssp             -CC--CSSCEEEEEEE-TTEEEEEETT------SEEEEEETTSSSCEEEEEE--------CCSSC--EEEEEECTTSSEE
T ss_pred             -cC--CCCceEEEEEC-CCEEEEEcCC------CCEEEEecccCcceeeEEc--------CCCCC--eeEEEEcCCCCEE
Confidence             11  11122334443 5677777764      2588899874111122221        11111  1222222567788


Q ss_pred             EEcCcCCCCCCCCcEEEEEcCC
Q 016774          280 IYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       280 i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                      +.|+.++      .+.++|+.+
T Consensus       233 ~s~~~d~------~v~iwd~~~  248 (401)
T 4aez_A          233 ASGGNDN------VVQIWDARS  248 (401)
T ss_dssp             EEEETTS------CEEEEETTC
T ss_pred             EEEeCCC------eEEEccCCC
Confidence            8888754      488899874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=87.43  E-value=14  Score=32.38  Aligned_cols=153  Identities=10%  Similarity=0.064  Sum_probs=70.9

Q ss_pred             CCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEE-CCEEEEEcCccCCCCCccceeeeec
Q 016774           48 SNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVI-GDCLVLFGGINDRGNRHNDTWIGQI  126 (383)
Q Consensus        48 ~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~  126 (383)
                      ++++++.|+.      ...+.+++....     ++..+.........-.+++.. ++++++.|+.+.      .+.++|+
T Consensus        19 ~~~~l~~~~~------d~~v~i~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg------~i~vwd~   81 (372)
T 1k8k_C           19 DRTQIAICPN------NHEVHIYEKSGN-----KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR------NAYVWTL   81 (372)
T ss_dssp             TSSEEEEECS------SSEEEEEEEETT-----EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS------CEEEEEE
T ss_pred             CCCEEEEEeC------CCEEEEEeCCCC-----cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCC------eEEEEEC
Confidence            4566777763      245677777443     333321100111111222223 344666666432      4778888


Q ss_pred             ccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCC
Q 016774          127 ACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPAR  206 (383)
Q Consensus       127 ~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r  206 (383)
                             .+.++.......  .....-.++....++..++.|+.+      ..+..+|+++.   -.|........+...
T Consensus        82 -------~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~---~~~~~~~~~~~~~~~  143 (372)
T 1k8k_C           82 -------KGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQE---NDWWVCKHIKKPIRS  143 (372)
T ss_dssp             -------ETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETT---TTEEEEEEECTTCCS
T ss_pred             -------CCCeeeeeEEee--cCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCC---CcceeeeeeecccCC
Confidence                   355554432111  111112233334455677777642      34666776654   123333211112122


Q ss_pred             CCceEEEEcCCEEEEEcccCCCCCccccEEEEEcc
Q 016774          207 SGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVY  241 (383)
Q Consensus       207 ~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~  241 (383)
                      ...++....++.+++.|+.+.      .+.+||+.
T Consensus       144 ~i~~~~~~~~~~~l~~~~~dg------~i~~~d~~  172 (372)
T 1k8k_C          144 TVLSLDWHPNSVLLAAGSCDF------KCRIFSAY  172 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTS------CEEEEECC
T ss_pred             CeeEEEEcCCCCEEEEEcCCC------CEEEEEcc
Confidence            223334444566777777632      47888864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=87.37  E-value=13  Score=31.62  Aligned_cols=153  Identities=12%  Similarity=0.087  Sum_probs=88.5

Q ss_pred             cceeeeCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccce
Q 016774           42 HSLNFVSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDT  121 (383)
Q Consensus        42 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  121 (383)
                      +.+...++.+|+-.|..    ..+.+..+++.+.     +-.+-. ..|..-.+.+++..+++||+....+      +.+
T Consensus        24 qGL~~~~~~LyestG~~----g~S~v~~vD~~tg-----kv~~~~-~l~~~~fgeGi~~~~~~ly~ltw~~------~~v   87 (243)
T 3mbr_X           24 EGLFYLRGHLYESTGET----GRSSVRKVDLETG-----RILQRA-EVPPPYFGAGIVAWRDRLIQLTWRN------HEG   87 (243)
T ss_dssp             EEEEEETTEEEEEECCT----TSCEEEEEETTTC-----CEEEEE-ECCTTCCEEEEEEETTEEEEEESSS------SEE
T ss_pred             ccEEEECCEEEEECCCC----CCceEEEEECCCC-----CEEEEE-eCCCCcceeEEEEeCCEEEEEEeeC------CEE
Confidence            45666788999998842    1345667777543     222211 2444557788899999999986542      468


Q ss_pred             eeeecccccCCcccccEE-EccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCce-EEccc
Q 016774          122 WIGQIACHENLGITLSWR-LLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSW-QQLVT  199 (383)
Q Consensus       122 ~~~d~~~~~~~~~~~~W~-~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W-~~~~~  199 (383)
                      ++||.       ++.+-. +++.      +..+.+.+. +++.+|+.-|       .+.++.+|+.+.    +- ..++.
T Consensus        88 ~v~D~-------~tl~~~~ti~~------~~~Gwglt~-dg~~L~vSdg-------s~~l~~iDp~t~----~~~~~I~V  142 (243)
T 3mbr_X           88 FVYDL-------ATLTPRARFRY------PGEGWALTS-DDSHLYMSDG-------TAVIRKLDPDTL----QQVGSIKV  142 (243)
T ss_dssp             EEEET-------TTTEEEEEEEC------SSCCCEEEE-CSSCEEEECS-------SSEEEEECTTTC----CEEEEEEC
T ss_pred             EEEEC-------CcCcEEEEEeC------CCCceEEee-CCCEEEEECC-------CCeEEEEeCCCC----eEEEEEEE
Confidence            99998       344433 2222      223444543 4447888654       356999999875    22 22221


Q ss_pred             CCCCCCCCC-ceEEEEcCCEEEEEcccCCCCCccccEEEEEccc
Q 016774          200 HPSPPARSG-HSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE  242 (383)
Q Consensus       200 ~~~p~~r~~-~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~  242 (383)
                      ...+.+... --+... +++||+---.      .++|.+.|+.+
T Consensus       143 ~~~g~~~~~lNeLe~~-~G~lyanvw~------s~~I~vIDp~t  179 (243)
T 3mbr_X          143 TAGGRPLDNLNELEWV-NGELLANVWL------TSRIARIDPAS  179 (243)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETT------TTEEEEECTTT
T ss_pred             ccCCcccccceeeEEe-CCEEEEEECC------CCeEEEEECCC
Confidence            112222111 123344 5777744322      34799999987

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=86.84  E-value=27  Score=34.95  Aligned_cols=130  Identities=6%  Similarity=-0.064  Sum_probs=70.6

Q ss_pred             ceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccce-EEEeccCCcccCceEEcc
Q 016774          120 DTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDT-WVLELSENFCFGSWQQLV  198 (383)
Q Consensus       120 ~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~-~~~d~~~~~~~~~W~~~~  198 (383)
                      .+++||.       .+.+++........|... -.+.+...++.+++...        .-+ ++||++++    +++...
T Consensus       516 Gl~~~~~-------~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~T~--------~Glv~~~d~~~~----~~~~~~  575 (781)
T 3v9f_A          516 GVGIYTP-------DMQLVRKFNQYEGFCSNT-INQIYRSSKGQMWLATG--------EGLVCFPSARNF----DYQVFQ  575 (781)
T ss_dssp             CEEEECT-------TCCEEEEECTTTTCSCSC-EEEEEECTTSCEEEEET--------TEEEEESCTTTC----CCEEEC
T ss_pred             CEEEEeC-------CCCeEEEccCCCCCCCCe-eEEEEECCCCCEEEEEC--------CCceEEECCCCC----cEEEcc
Confidence            3788988       467777765422222211 11222224557777432        235 88898887    776655


Q ss_pred             -cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEE-cCC
Q 016774          199 -THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI-LGG  276 (383)
Q Consensus       199 -~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~-~~~  276 (383)
                       ...+|.... .+++...++.|++.+..        .+.+|++.+  .+++...     ....++...+...++.. .++
T Consensus       576 ~~~gl~~~~i-~~i~~d~~g~lW~~t~~--------Gl~~~~~~~--~~~~~~~-----~~dGl~~~~f~~~~~~~~~~G  639 (781)
T 3v9f_A          576 RKEGLPNTHI-RAISEDKNGNIWASTNT--------GISCYITSK--KCFYTYD-----HSNNIPQGSFISGCVTKDHNG  639 (781)
T ss_dssp             GGGTCSCCCC-CEEEECSSSCEEEECSS--------CEEEEETTT--TEEEEEC-----GGGTCCSSCEEEEEEEECTTS
T ss_pred             ccCCCCCceE-EEEEECCCCCEEEEcCC--------ceEEEECCC--CceEEec-----ccCCccccccccCceEECCCC
Confidence             223443332 44555445677776532        389999998  8887774     22335554443333332 355


Q ss_pred             EEEEEcCcCC
Q 016774          277 RVLIYGGEDS  286 (383)
Q Consensus       277 ~l~i~GG~~~  286 (383)
                      .|| +||.++
T Consensus       640 ~l~-~g~~~G  648 (781)
T 3v9f_A          640 LIY-FGSING  648 (781)
T ss_dssp             CEE-EEETTE
T ss_pred             EEE-EECCCc
Confidence            544 465543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=86.31  E-value=14  Score=30.99  Aligned_cols=199  Identities=10%  Similarity=0.033  Sum_probs=89.7

Q ss_pred             CCEEEEEccccCCCCCCCceEEEEecc-CcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCCCCCccceeeeec
Q 016774           48 SNCLVLFGGGCEGGRHLDDTWVAYVGN-DFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQI  126 (383)
Q Consensus        48 ~~~i~v~GG~~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~  126 (383)
                      +++.+++++       ...+++++... .     +...+...............-+++.+++++....  ....+|.+++
T Consensus        52 dg~~l~~~~-------~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~  117 (297)
T 2ojh_A           52 DGKYLLLNS-------EGLLYRLSLAGDP-----SPEKVDTGFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPS  117 (297)
T ss_dssp             TSSEEEEEE-------TTEEEEEESSSCC-----SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEET
T ss_pred             CCCEEEEEc-------CCeEEEEeCCCCC-----CceEeccccccccccceEECCCCCEEEEEEeCCC--CcceEEEEEC
Confidence            445555553       13677787744 3     3444432111122221222223444455443221  2346788887


Q ss_pred             ccccCCcccccEEEccCCCCCCCccccceeEEECCcE-EEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCC
Q 016774          127 ACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRK-MVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPA  205 (383)
Q Consensus       127 ~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~  205 (383)
                             .+.....+....    .  ........+++ +++.++.+    ....+|.+++.+.    ....+.  ..+  
T Consensus       118 -------~~~~~~~~~~~~----~--~~~~~~spdg~~l~~~~~~~----~~~~l~~~~~~~~----~~~~~~--~~~--  172 (297)
T 2ojh_A          118 -------TGGTPRLMTKNL----P--SYWHGWSPDGKSFTYCGIRD----QVFDIYSMDIDSG----VETRLT--HGE--  172 (297)
T ss_dssp             -------TCCCCEECCSSS----S--EEEEEECTTSSEEEEEEEET----TEEEEEEEETTTC----CEEECC--CSS--
T ss_pred             -------CCCceEEeecCC----C--ccceEECCCCCEEEEEECCC----CceEEEEEECCCC----cceEcc--cCC--
Confidence                   344444443211    1  22233333434 54444432    1246788888776    555554  111  


Q ss_pred             CCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcC
Q 016774          206 RSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGED  285 (383)
Q Consensus       206 r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~  285 (383)
                      ....++....++..+++++....   ...+|.+++..  .....+.        ..  .....+.....+++.+++++..
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~--~~~~~~~--------~~--~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDG--SSVERIT--------DS--AYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTS--SCEEECC--------CC--SEEEEEEEECTTSSEEEEEEEE
T ss_pred             CccccceECCCCCEEEEEecCCC---CccEEEECCCC--CCcEEEe--------cC--CcccCCeEECCCCCEEEEEEcC
Confidence            11122233334554554443111   23578888776  6666652        11  1112222222566666666554


Q ss_pred             CCCC-----CCCcEEEEEcC
Q 016774          286 SARR-----RKDDFWVLDTK  300 (383)
Q Consensus       286 ~~~~-----~~~~~~~~d~~  300 (383)
                      ....     ....++++|+.
T Consensus       238 ~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          238 ADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             TTCCSCCSSEEEEEEEEETT
T ss_pred             CCCCcccccCceEEEEEecC
Confidence            3211     12468899987

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=86.08  E-value=16  Score=32.30  Aligned_cols=68  Identities=15%  Similarity=0.071  Sum_probs=33.0

Q ss_pred             CCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEE
Q 016774          160 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD  239 (383)
Q Consensus       160 ~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~  239 (383)
                      .++..++.|+.+      ..+..+|+++.   -.|........+......++....++.+++.|+.+.      .+.+||
T Consensus       110 ~~~~~l~~~~~d------~~i~iwd~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd  174 (377)
T 3dwl_C          110 PNEDKFAVGSGA------RVISVCYFEQE---NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR------KAYVLS  174 (377)
T ss_dssp             TTSSCCEEEESS------SCEEECCC--------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS------CEEEEE
T ss_pred             CCCCEEEEEecC------CeEEEEEECCc---ccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC------EEEEEE
Confidence            345666776642      24777887765   113222211111222223344444567788887642      478888


Q ss_pred             ccc
Q 016774          240 VYE  242 (383)
Q Consensus       240 ~~~  242 (383)
                      +..
T Consensus       175 ~~~  177 (377)
T 3dwl_C          175 AYV  177 (377)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=85.57  E-value=32  Score=34.53  Aligned_cols=97  Identities=12%  Similarity=0.107  Sum_probs=55.1

Q ss_pred             CCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcc-cCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEE
Q 016774          160 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFL  238 (383)
Q Consensus       160 ~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~  238 (383)
                      .++.+++...        .-+++||++++    +++... ...+|... ..+++...++.|++.+..        .+.+|
T Consensus       552 ~~g~lWigT~--------~Gl~~~d~~~~----~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~~--------Gl~~~  610 (795)
T 4a2l_A          552 SNGIIWVGTR--------EGFYCFNEKDK----QIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTNR--------GISCF  610 (795)
T ss_dssp             TTSCEEEEES--------SCEEEEETTTT----EEEEECGGGTCSCSC-EEEEEECTTSCEEEEETT--------EEEEE
T ss_pred             CCCCEEEEeC--------CCceeECCCCC----cEEEeCCCCCCchhh-eEEEEECCCCCEEEEcCC--------ceEEE
Confidence            4557777431        13899999887    777665 22334332 233444445677776532        48899


Q ss_pred             EcccCccceEEecccccCCCCCCCCCceee-EEEEEcCCEEEEEcCcC
Q 016774          239 DVYEGFFKWVQIPYELQNIPAGFSLPRVGH-SATLILGGRVLIYGGED  285 (383)
Q Consensus       239 ~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~-~~~~~~~~~l~i~GG~~  285 (383)
                      ++.+  .+++...     ....++...... ++....++.|| +||..
T Consensus       611 ~~~~--~~~~~~~-----~~dGl~~~~f~~~~~~~~~~G~l~-~g~~~  650 (795)
T 4a2l_A          611 NPET--EKFRNFT-----ESDGLQSNQFNTASYCRTSVGQMY-FGGIN  650 (795)
T ss_dssp             ETTT--TEEEEEC-----GGGTCSCSCEEEEEEEECTTSCEE-EEETT
T ss_pred             cCCC--CcEEEcC-----CcCCCccccCccCceeECCCCeEE-EecCC
Confidence            9998  8887764     223455554432 33332455555 45544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=85.49  E-value=19  Score=31.92  Aligned_cols=111  Identities=11%  Similarity=0.017  Sum_probs=54.5

Q ss_pred             EEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcC-CEEEEEcccCCCCCccccE
Q 016774          157 CCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGG-NRTVLFGGRGVGYEVLNDV  235 (383)
Q Consensus       157 ~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~-~~i~v~GG~~~~~~~~~~v  235 (383)
                      +...++..++.|+.+      ..+.++|+.++    +-...-.  .-. ....++....+ ..+++.|+.+.      .|
T Consensus       134 ~~spdg~~l~sgs~d------~~i~iwd~~~~----~~~~~~~--~h~-~~V~~~~~~~~~~~~l~s~s~D~------~v  194 (344)
T 4gqb_B          134 SVLSSGTQAVSGSKD------ICIKVWDLAQQ----VVLSSYR--AHA-AQVTCVAASPHKDSVFLSCSEDN------RI  194 (344)
T ss_dssp             EECTTSSEEEEEETT------SCEEEEETTTT----EEEEEEC--CCS-SCEEEEEECSSCTTEEEEEETTS------CE
T ss_pred             EECCCCCEEEEEeCC------CeEEEEECCCC----cEEEEEc--CcC-CceEEEEecCCCCCceeeecccc------cc
Confidence            334556777777752      34788898876    3222211  111 11112222222 34777777642      48


Q ss_pred             EEEEcccCccceEEecccccCCCCCCCCCceeeEEEEE-cCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          236 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI-LGGRVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       236 ~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~-~~~~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                      .++|+.+  .+-...-      ......... .++... .++.+++.|+.++      .+.++|+.+
T Consensus       195 ~iwd~~~--~~~~~~~------~~~~~~~~~-~~~~~~p~~~~~l~sg~~dg------~v~~wd~~~  246 (344)
T 4gqb_B          195 LLWDTRC--PKPASQI------GCSAPGYLP-TSLAWHPQQSEVFVFGDENG------TVSLVDTKS  246 (344)
T ss_dssp             EEEETTS--SSCEEEC------C----CCCE-EEEEECSSCTTEEEEEETTS------EEEEEESCC
T ss_pred             ccccccc--cceeeee------ecceeeccc-eeeeecCCCCcceEEeccCC------cEEEEECCC
Confidence            8899887  4433220      011111111 122211 3566888887754      377888763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=84.12  E-value=21  Score=31.22  Aligned_cols=121  Identities=8%  Similarity=-0.031  Sum_probs=55.7

Q ss_pred             eEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCE-EEEEcccCCCCCcccc
Q 016774          156 ACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNR-TVLFGGRGVGYEVLND  234 (383)
Q Consensus       156 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~  234 (383)
                      ++...++++|+.+...    ....+++||+.++    +++.+......... -..++.-.+++ +|+.+...      ..
T Consensus        45 ~a~spdg~l~~~~~~~----~~~~v~~~~~~~g----~~~~~~~~~~~~~~-p~~~a~spdg~~l~~~~~~~------~~  109 (347)
T 3hfq_A           45 LALSAKDCLYSVDKED----DEGGIAAWQIDGQ----TAHKLNTVVAPGTP-PAYVAVDEARQLVYSANYHK------GT  109 (347)
T ss_dssp             EEECTTCEEEEEEEET----TEEEEEEEEEETT----EEEEEEEEEEESCC-CSEEEEETTTTEEEEEETTT------TE
T ss_pred             EEEccCCeEEEEEecC----CCceEEEEEecCC----cEEEeeeeecCCCC-CEEEEECCCCCEEEEEeCCC------CE
Confidence            4444556777665321    1356899999876    66655410001111 12233333454 55444221      24


Q ss_pred             EEEEEcccCccceEEecccccCCCCCCCCCc----eeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcC
Q 016774          235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPR----VGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK  300 (383)
Q Consensus       235 v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r----~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~  300 (383)
                      +.+|++..+ ...+.+..-  ...+..|.+|    .-++++...++++|+.+...      +.+++|++.
T Consensus       110 v~v~~~~~~-g~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~------~~v~~~~~~  170 (347)
T 3hfq_A          110 AEVMKIAAD-GALTLTDTV--QHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS------DKVYVYNVS  170 (347)
T ss_dssp             EEEEEECTT-SCEEEEEEE--ECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT------TEEEEEEEC
T ss_pred             EEEEEeCCC-CCeeeccee--ecCCCCCCccccCCCceEEEECCCCcEEEEeCCC------CEEEEEEEC
Confidence            777877420 233333200  0112222211    12333433566766654332      358888886

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=83.14  E-value=28  Score=31.90  Aligned_cols=197  Identities=13%  Similarity=0.116  Sum_probs=103.7

Q ss_pred             cccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCC--CCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEE
Q 016774          135 TLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLY--GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLT  212 (383)
Q Consensus       135 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~--~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~  212 (383)
                      +..|++-.... .|....-|+.+.+++ .-|++|=...+  ...+.-++.-|.-..+..+.=.+++. .....-+-.|.-
T Consensus       269 ~spW~~t~L~~-i~~vTe~HSFa~i~~-~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~s-ey~~~AsEPCvk  345 (670)
T 3ju4_A          269 KSPWRKTDLGL-IPSVTEVHSFATIDN-NGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPS-EYEPDASEPCIK  345 (670)
T ss_dssp             TSCCEEEECCS-CTTCSEEEEEEECSS-SCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCG-GGCTTEEEEEEE
T ss_pred             cCCceeccccc-ccceeeeeeeeEecC-CceEEEeccCCCCcceeeEEEecccccCCcceeeeechh-hhccccccchhh
Confidence            34455444322 566666788888887 34465532111  11222222222111111122233332 122222233444


Q ss_pred             EEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCC----
Q 016774          213 RIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR----  288 (383)
Q Consensus       213 ~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~----  288 (383)
                      ++ ++.||+.--...+...-+.+.+-+...  ..|+.+.++..--...+|        ...+++.||+||-.-..+    
T Consensus       346 yY-dgvLyLtTRgt~~~~~GS~L~rs~d~G--q~w~slrfp~nvHhtnlP--------FakvgD~l~mFgsERA~nEWE~  414 (670)
T 3ju4_A          346 YY-DGVLYLITRGTRGDRLGSSLHRSRDIG--QTWESLRFPHNVHHTTLP--------FAKVGDDLIMFGSERAENEWEA  414 (670)
T ss_dssp             EE-TTEEEEEEEESCTTSCCCEEEEESSTT--SSCEEEECTTCCCSSCCC--------EEEETTEEEEEEECSSTTCSST
T ss_pred             hh-CCEEEEEecCcCCCCCcceeeeecccC--CchhheeccccccccCCC--------cceeCCEEEEEecccccccccc
Confidence            45 799998864434555666788888888  899998532111111111        123799999999653211    


Q ss_pred             --------CCCCcEEEEEcCCCcccccccccccccccccccceeeccC---CCCCCCccceeeeecCCCcEEEEEcCcc
Q 016774          289 --------RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE---GYKPNCRSFHRACPDYSGRYLYVFGGMV  356 (383)
Q Consensus       289 --------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---~~~p~~r~~~~~~~~~~~~~l~v~GG~~  356 (383)
                              ......+.....           |..++...-.|..+..+   |.....-.+-+++.+.++=-.|||||..
T Consensus       415 G~pD~RY~a~yPRtF~~r~n-----------v~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd  482 (670)
T 3ju4_A          415 GAPDDRYKASYPRTFYARLN-----------VNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED  482 (670)
T ss_dssp             TCCCCCSSCBCCEEEEEEEE-----------TTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBC
T ss_pred             CCCcccccccCCceEEEEee-----------cccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcc
Confidence                    112334444432           33445556778877643   5555566667777776666678999984

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=83.08  E-value=26  Score=31.51  Aligned_cols=68  Identities=7%  Similarity=0.037  Sum_probs=35.0

Q ss_pred             EECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEc-CCEEEEEcccCCCCCccccEE
Q 016774          158 CIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIG-GNRTVLFGGRGVGYEVLNDVW  236 (383)
Q Consensus       158 ~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~i~v~GG~~~~~~~~~~v~  236 (383)
                      ...++..++.|+.+      ..+.++|+.+.    +-...-. ...  ....++.... +..+++.||....    ..+.
T Consensus       225 ~~~~~~~l~s~~~d------~~v~iwd~~~~----~~~~~~~-~~~--~~v~~~~~~p~~~~ll~~~~gs~d----~~i~  287 (401)
T 4aez_A          225 WRSDGLQLASGGND------NVVQIWDARSS----IPKFTKT-NHN--AAVKAVAWCPWQSNLLATGGGTMD----KQIH  287 (401)
T ss_dssp             ECTTSSEEEEEETT------SCEEEEETTCS----SEEEEEC-CCS--SCCCEEEECTTSTTEEEEECCTTT----CEEE
T ss_pred             EcCCCCEEEEEeCC------CeEEEccCCCC----CccEEec-CCc--ceEEEEEECCCCCCEEEEecCCCC----CEEE
Confidence            33455677777742      35888998875    3222211 111  1112223322 3457777642111    2589


Q ss_pred             EEEccc
Q 016774          237 FLDVYE  242 (383)
Q Consensus       237 ~~~~~~  242 (383)
                      +||+.+
T Consensus       288 i~d~~~  293 (401)
T 4aez_A          288 FWNAAT  293 (401)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            999887

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=82.81  E-value=25  Score=31.17  Aligned_cols=68  Identities=16%  Similarity=0.214  Sum_probs=35.6

Q ss_pred             EEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEc-CCEEEEEcCcCCCCC
Q 016774          211 LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLIL-GGRVLIYGGEDSARR  289 (383)
Q Consensus       211 ~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~  289 (383)
                      +....++..++.|+.+.      .|.++|+.+  .+-...-       . ....... ++.... ++.+++.||.++   
T Consensus       145 v~~spdg~~l~sgs~dg------~v~iwd~~~--~~~~~~~-------~-~h~~~v~-~v~~s~~~~~~~~s~~~dg---  204 (357)
T 4g56_B          145 LSVFSDGTQAVSGGKDF------SVKVWDLSQ--KAVLKSY-------N-AHSSEVN-CVAACPGKDTIFLSCGEDG---  204 (357)
T ss_dssp             EEECSSSSEEEEEETTS------CEEEEETTT--TEEEEEE-------C-CCSSCEE-EEEECTTCSSCEEEEETTS---
T ss_pred             EEECCCCCEEEEEeCCC------eEEEEECCC--CcEEEEE-------c-CCCCCEE-EEEEccCCCceeeeeccCC---
Confidence            33344567778887642      488899887  4433221       1 1111111 222213 345777777754   


Q ss_pred             CCCcEEEEEcCC
Q 016774          290 RKDDFWVLDTKA  301 (383)
Q Consensus       290 ~~~~~~~~d~~~  301 (383)
                         .+.++|+.+
T Consensus       205 ---~v~~wd~~~  213 (357)
T 4g56_B          205 ---RILLWDTRK  213 (357)
T ss_dssp             ---CEEECCTTS
T ss_pred             ---ceEEEECCC
Confidence               367777763

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=82.47  E-value=25  Score=35.05  Aligned_cols=64  Identities=14%  Similarity=0.222  Sum_probs=37.3

Q ss_pred             cEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcC--CEEEEEcccCCCCCccccEEEEE
Q 016774          162 RKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGG--NRTVLFGGRGVGYEVLNDVWFLD  239 (383)
Q Consensus       162 ~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~--~~i~v~GG~~~~~~~~~~v~~~~  239 (383)
                      +..++.|+.+      ..+..+|+.++    +|..+.... .......++....+  +.+++.|+.+.      .|.++|
T Consensus        67 ~~~l~s~s~D------g~I~vwd~~~~----~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwd  129 (753)
T 3jro_A           67 GTILASCSYD------GKVLIWKEENG----RWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVE  129 (753)
T ss_dssp             CSEEEEEETT------SCEEEEEEETT----EEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEE
T ss_pred             CCEEEEEeCC------CeEEEEECCCC----ccccccccc-CCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEE
Confidence            4677777752      34888898887    776665111 11122223333333  56778887642      588888


Q ss_pred             ccc
Q 016774          240 VYE  242 (383)
Q Consensus       240 ~~~  242 (383)
                      +..
T Consensus       130 l~~  132 (753)
T 3jro_A          130 FKE  132 (753)
T ss_dssp             CCS
T ss_pred             eec
Confidence            876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=82.24  E-value=30  Score=31.58  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=52.8

Q ss_pred             CcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEc
Q 016774          161 NRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDV  240 (383)
Q Consensus       161 ~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~  240 (383)
                      ++..++.|+.+      ..+..+|+.+.    +-...-. . .  .....+.... +..++.|+.+.      .|.+||+
T Consensus       288 ~~~~l~~~~~d------~~i~i~d~~~~----~~~~~~~-~-~--~~~v~~~~~~-~~~l~~~~~dg------~i~vwd~  346 (445)
T 2ovr_B          288 DGIHVVSGSLD------TSIRVWDVETG----NCIHTLT-G-H--QSLTSGMELK-DNILVSGNADS------TVKIWDI  346 (445)
T ss_dssp             CSSEEEEEETT------SCEEEEETTTC----CEEEEEC-C-C--CSCEEEEEEE-TTEEEEEETTS------CEEEEET
T ss_pred             CCCEEEEEeCC------CeEEEEECCCC----CEEEEEc-C-C--cccEEEEEEe-CCEEEEEeCCC------eEEEEEC
Confidence            33566666642      34888998876    3222211 1 1  1112233443 55666776532      4889998


Q ss_pred             ccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          241 YEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       241 ~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                      .+  .+-...-      ...... ...-.++. .++.+++.|+.++      .+.++|+.+
T Consensus       347 ~~--~~~~~~~------~~~~~~-~~~v~~~~-~~~~~l~s~~~dg------~v~iwd~~~  391 (445)
T 2ovr_B          347 KT--GQCLQTL------QGPNKH-QSAVTCLQ-FNKNFVITSSDDG------TVKLWDLKT  391 (445)
T ss_dssp             TT--CCEEEEE------CSTTSC-SSCEEEEE-ECSSEEEEEETTS------EEEEEETTT
T ss_pred             CC--CcEEEEE------ccCCCC-CCCEEEEE-ECCCEEEEEeCCC------eEEEEECCC
Confidence            76  4332221      010001 11112222 4677788887754      478888873

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=81.83  E-value=25  Score=30.46  Aligned_cols=122  Identities=4%  Similarity=-0.040  Sum_probs=62.7

Q ss_pred             eeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCcccc
Q 016774          155 AACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLND  234 (383)
Q Consensus       155 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~  234 (383)
                      ..+...++.+|+.+..      ...++++|++++    +...+..  .+ ...-++++.-.++.+|+.....  ......
T Consensus        49 ~~~~~~~g~l~~~~~~------~~~i~~~d~~~~----~~~~~~~--~~-~~~~~~i~~~~dg~l~v~~~~~--~~~~~~  113 (333)
T 2dg1_A           49 GLNFDRQGQLFLLDVF------EGNIFKINPETK----EIKRPFV--SH-KANPAAIKIHKDGRLFVCYLGD--FKSTGG  113 (333)
T ss_dssp             EEEECTTSCEEEEETT------TCEEEEECTTTC----CEEEEEE--CS-SSSEEEEEECTTSCEEEEECTT--SSSCCE
T ss_pred             CcEECCCCCEEEEECC------CCEEEEEeCCCC----cEEEEee--CC-CCCcceEEECCCCcEEEEeCCC--CCCCce
Confidence            3444456678887643      246899999887    6665531  11 1222334444456777765332  011246


Q ss_pred             EEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcC
Q 016774          235 VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK  300 (383)
Q Consensus       235 v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~  300 (383)
                      |+++|+++  .....+.      ....+..+. .......++.+|+.............++.+|.+
T Consensus       114 i~~~d~~~--~~~~~~~------~~~~~~~~~-~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~  170 (333)
T 2dg1_A          114 IFAATENG--DNLQDII------EDLSTAYCI-DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD  170 (333)
T ss_dssp             EEEECTTS--CSCEEEE------CSSSSCCCE-EEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred             EEEEeCCC--CEEEEEE------ccCccCCcc-cceEECCCCCEEEEeccccccCCCceEEEEeCC
Confidence            99999987  6655331      011111122 223332567788754321111123468888876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=80.41  E-value=27  Score=29.91  Aligned_cols=108  Identities=16%  Similarity=0.042  Sum_probs=57.9

Q ss_pred             eEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccE
Q 016774          156 ACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDV  235 (383)
Q Consensus       156 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v  235 (383)
                      .+...++..++.|+.+      ..+..+|+.+.    +-....  ..+  ....++....++.+++.|+.+.      .+
T Consensus       189 ~~~~~~~~~l~~~~~d------g~i~~~d~~~~----~~~~~~--~~~--~~v~~~~~s~~~~~l~~~~~~~------~i  248 (337)
T 1gxr_A          189 IDISNDGTKLWTGGLD------NTVRSWDLREG----RQLQQH--DFT--SQIFSLGYCPTGEWLAVGMESS------NV  248 (337)
T ss_dssp             EEECTTSSEEEEEETT------SEEEEEETTTT----EEEEEE--ECS--SCEEEEEECTTSSEEEEEETTS------CE
T ss_pred             EEECCCCCEEEEEecC------CcEEEEECCCC----ceEeee--cCC--CceEEEEECCCCCEEEEEcCCC------cE
Confidence            3334455667776642      45889998876    322221  111  1122333334566777776532      48


Q ss_pred             EEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          236 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       236 ~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                      .+||+.+  ..-..+.        ....+ . .++....++.+++.|+.++      .+.++|+.+
T Consensus       249 ~~~~~~~--~~~~~~~--------~~~~~-v-~~~~~~~~~~~l~~~~~dg------~i~~~~~~~  296 (337)
T 1gxr_A          249 EVLHVNK--PDKYQLH--------LHESC-V-LSLKFAYCGKWFVSTGKDN------LLNAWRTPY  296 (337)
T ss_dssp             EEEETTS--SCEEEEC--------CCSSC-E-EEEEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred             EEEECCC--CCeEEEc--------CCccc-e-eEEEECCCCCEEEEecCCC------cEEEEECCC
Confidence            8999987  4433331        11111 1 2223225677778877654      478888873

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=80.34  E-value=31  Score=30.53  Aligned_cols=102  Identities=11%  Similarity=0.134  Sum_probs=51.3

Q ss_pred             cceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCC
Q 016774          178 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI  257 (383)
Q Consensus       178 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~  257 (383)
                      ..+|.+|+++.    .+..+.. ..+ .........-.+++.+++...... .....++++|+.+  .+...+.      
T Consensus       216 ~~l~~~d~~~~----~~~~l~~-~~~-~~~~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~--g~~~~l~------  280 (396)
T 3c5m_A          216 ARMWLVNEDGS----NVRKIKE-HAE-GESCTHEFWIPDGSAMAYVSYFKG-QTDRVIYKANPET--LENEEVM------  280 (396)
T ss_dssp             CCCEEEETTSC----CCEESSC-CCT-TEEEEEEEECTTSSCEEEEEEETT-TCCEEEEEECTTT--CCEEEEE------
T ss_pred             ceEEEEECCCC----ceeEeec-cCC-CccccceEECCCCCEEEEEecCCC-CccceEEEEECCC--CCeEEee------
Confidence            57999999877    6666652 111 111111222234444444433211 1113499999988  6666653      


Q ss_pred             CCCCCCCceeeEEEEEc-CCEEEEEcCcCCC----------CCCCCcEEEEEcC
Q 016774          258 PAGFSLPRVGHSATLIL-GGRVLIYGGEDSA----------RRRKDDFWVLDTK  300 (383)
Q Consensus       258 ~~~~p~~r~~~~~~~~~-~~~l~i~GG~~~~----------~~~~~~~~~~d~~  300 (383)
                        ..+  ...  ..... +++++++.+....          .....+++.+|+.
T Consensus       281 --~~~--~~~--~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          281 --VMP--PCS--HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             --ECC--SEE--EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             --eCC--CCC--CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence              112  111  22224 7777766543210          0123579999987

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=80.16  E-value=35  Score=31.07  Aligned_cols=140  Identities=11%  Similarity=0.086  Sum_probs=71.8

Q ss_pred             cceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcE-EEEEcccCCCCCcccceEEEeccCCcccCceEEc
Q 016774          119 NDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRK-MVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQL  197 (383)
Q Consensus       119 ~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~  197 (383)
                      ..++++|+       .+.+...+...     +....+.+...+++ +++.+..+    -...++.+|+.++    +..++
T Consensus       203 ~~i~~~d~-------~tg~~~~l~~~-----~~~~~~~~~spdg~~la~~~~~~----g~~~i~~~d~~~~----~~~~l  262 (415)
T 2hqs_A          203 SALVIQTL-------ANGAVRQVASF-----PRHNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASG----QIRQV  262 (415)
T ss_dssp             CEEEEEET-------TTCCEEEEECC-----SSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTC----CEEEC
T ss_pred             cEEEEEEC-------CCCcEEEeecC-----CCcccCEEEcCCCCEEEEEEecC----CCceEEEEECCCC----CEEeC
Confidence            46889998       45555554321     11222334444445 44444321    1246999999887    66555


Q ss_pred             ccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCE
Q 016774          198 VTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGR  277 (383)
Q Consensus       198 ~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~  277 (383)
                      .  ..+  ....+...-.+++.+++++....   ...+|.+|+.+  ..-..+.       .   ......+.....+++
T Consensus       263 ~--~~~--~~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~--~~~~~l~-------~---~~~~~~~~~~spdG~  323 (415)
T 2hqs_A          263 T--DGR--SNNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNING--GAPQRIT-------W---EGSQNQDADVSSDGK  323 (415)
T ss_dssp             C--CCS--SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTS--SCCEECC-------C---SSSEEEEEEECTTSS
T ss_pred             c--CCC--CcccceEECCCCCEEEEEECCCC---CcEEEEEECCC--CCEEEEe-------c---CCCcccCeEECCCCC
Confidence            4  111  11122222334555555543211   23699999988  6555542       1   112222233225666


Q ss_pred             EEEEcCcCCCCCCCCcEEEEEcC
Q 016774          278 VLIYGGEDSARRRKDDFWVLDTK  300 (383)
Q Consensus       278 l~i~GG~~~~~~~~~~~~~~d~~  300 (383)
                      .+++++....   ...++++|++
T Consensus       324 ~l~~~~~~~g---~~~i~~~d~~  343 (415)
T 2hqs_A          324 FMVMVSSNGG---QQHIAKQDLA  343 (415)
T ss_dssp             EEEEEEECSS---CEEEEEEETT
T ss_pred             EEEEEECcCC---ceEEEEEECC
Confidence            6666654321   3468899987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	383
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.91
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	90.64
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	89.67
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	87.03
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.26
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	84.55
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	80.46

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=269.27  Aligned_cols=263  Identities=19%  Similarity=0.199  Sum_probs=224.9

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCC---CCCCCceEEEEeccCcccccceEEcCCCCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEG---GRHLDDTWVAYVGNDFQGMLKWQKVNSGIP   90 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~---~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p   90 (383)
                      +.||+.+.+|++++..      |.||.+|++++++++|||+||....   ....+++|+||...+     +|++++ .+|
T Consensus        22 ~~yd~~t~~W~~~~~~------p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~-----~w~~~~-~~p   89 (288)
T d1zgka1          22 EAYNPSNGTWLRLADL------QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-----QWSPCA-PMS   89 (288)
T ss_dssp             EEEETTTTEEEECCCC------SSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT-----EEEECC-CCS
T ss_pred             EEEECCCCeEEECCCC------CCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccc-----cccccc-ccc
Confidence            5789999999998643      8899999999999999999997432   345679999999555     999987 478


Q ss_pred             CCCcceeEEEECCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEccc
Q 016774           91 SGRFGHTCVVIGDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGI  170 (383)
Q Consensus        91 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~  170 (383)
                      .+|..|+++.+++++|++||... ....++.+.+|+       .+..|.....   .+.+|..|+++...+ +++++||.
T Consensus        90 ~~r~~~~~~~~~~~i~~~gg~~~-~~~~~~~~~~~~-------~~~~~~~~~~---~~~~r~~~~~~~~~~-~~~~~GG~  157 (288)
T d1zgka1          90 VPRNRIGVGVIDGHIYAVGGSHG-CIHHNSVERYEP-------ERDEWHLVAP---MLTRRIGVGVAVLNR-LLYAVGGF  157 (288)
T ss_dssp             SCCBTCEEEEETTEEEEECCEET-TEECCCEEEEET-------TTTEEEECCC---CSSCCBSCEEEEETT-EEEEECCB
T ss_pred             ceecceeccccceeeEEecceec-ccccceeeeecc-------ccCccccccc---cccccccceeeeeee-cceEecCc
Confidence            89999999999999999999854 455788899999       5899988655   678899999998877 99999998


Q ss_pred             CCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEe
Q 016774          171 GLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI  250 (383)
Q Consensus       171 ~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i  250 (383)
                      ... ....+++.||+.++    +|...+  ..+.++..|+++.. +++|+++||.. .....++++.||+.+  .+|+.+
T Consensus       158 ~~~-~~~~~~~~~d~~~~----~~~~~~--~~~~~~~~~~~~~~-~~~i~i~GG~~-~~~~~~~~~~~~~~~--~~~~~~  226 (288)
T d1zgka1         158 DGT-NRLNSAECYYPERN----EWRMIT--AMNTIRSGAGVCVL-HNCIYAAGGYD-GQDQLNSVERYDVET--ETWTFV  226 (288)
T ss_dssp             CSS-CBCCCEEEEETTTT----EEEECC--CCSSCCBSCEEEEE-TTEEEEECCBC-SSSBCCCEEEEETTT--TEEEEC
T ss_pred             ccc-cccceEEEeecccc----cccccc--ccccccccccccce-eeeEEEecCcc-ccccccceeeeeecc--eeeecc
Confidence            544 46788999999998    999887  67778888988888 59999999985 456788999999999  999998


Q ss_pred             cccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCC
Q 016774          251 PYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGY  330 (383)
Q Consensus       251 ~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  330 (383)
                              ...|.+|..|++++ .+++|||+||.+.. ...+++++||++                  +++|+.+.+   
T Consensus       227 --------~~~p~~r~~~~~~~-~~~~l~v~GG~~~~-~~~~~v~~yd~~------------------~~~W~~~~~---  275 (288)
T d1zgka1         227 --------APMKHRRSALGITV-HQGRIYVLGGYDGH-TFLDSVECYDPD------------------TDTWSEVTR---  275 (288)
T ss_dssp             --------CCCSSCCBSCEEEE-ETTEEEEECCBCSS-CBCCEEEEEETT------------------TTEEEEEEE---
T ss_pred             --------cCccCcccceEEEE-ECCEEEEEecCCCC-eecceEEEEECC------------------CCEEEECCC---
Confidence                    57889999999887 79999999998764 457899999999                  789999966   


Q ss_pred             CCCCccceeeee
Q 016774          331 KPNCRSFHRACP  342 (383)
Q Consensus       331 ~p~~r~~~~~~~  342 (383)
                      +|.+|.+|++++
T Consensus       276 ~p~~R~~~~~~~  287 (288)
T d1zgka1         276 MTSGRSGVGVAV  287 (288)
T ss_dssp             CSSCCBSCEEEE
T ss_pred             CCCCcEeEEEEE
Confidence            899999998864

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-34  Score=256.98  Aligned_cols=261  Identities=18%  Similarity=0.211  Sum_probs=217.3

Q ss_pred             eCCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCCCcceeEEEECCEEEEEcCccCC---CCCccceee
Q 016774           47 VSNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSGRFGHTCVVIGDCLVLFGGINDR---GNRHNDTWI  123 (383)
Q Consensus        47 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~  123 (383)
                      +++.|||+||..  ....+++++||+.++     +|++++ .+|.+|.+|++++++++|||+||....   ...++++++
T Consensus         3 ~g~~iyv~GG~~--~~~~~~~~~yd~~t~-----~W~~~~-~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~   74 (288)
T d1zgka1           3 VGRLIYTAGGYF--RQSLSYLEAYNPSNG-----TWLRLA-DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC   74 (288)
T ss_dssp             CCCCEEEECCBS--SSBCCCEEEEETTTT-----EEEECC-CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEE
T ss_pred             cCCEEEEECCcC--CCCCceEEEEECCCC-----eEEECC-CCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhh
Confidence            467899999974  346789999999665     999997 588999999999999999999997532   234789999


Q ss_pred             eecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCC
Q 016774          124 GQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSP  203 (383)
Q Consensus       124 ~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p  203 (383)
                      ||+       .+++|+++..   +|.+|..|+++..++ ++|++||.... ..+++.+.+|+.++    +|...+  ..+
T Consensus        75 yd~-------~~~~w~~~~~---~p~~r~~~~~~~~~~-~i~~~gg~~~~-~~~~~~~~~~~~~~----~~~~~~--~~~  136 (288)
T d1zgka1          75 YNP-------MTNQWSPCAP---MSVPRNRIGVGVIDG-HIYAVGGSHGC-IHHNSVERYEPERD----EWHLVA--PML  136 (288)
T ss_dssp             EET-------TTTEEEECCC---CSSCCBTCEEEEETT-EEEEECCEETT-EECCCEEEEETTTT----EEEECC--CCS
T ss_pred             ccc-------cccccccccc---ccceecceeccccce-eeEEecceecc-cccceeeeeccccC----cccccc--ccc
Confidence            999       6999999865   789999999999887 99999998543 46788999999998    999887  778


Q ss_pred             CCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcC
Q 016774          204 PARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGG  283 (383)
Q Consensus       204 ~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG  283 (383)
                      .+|..|+++.+ ++.++++||.. .....++++.||+.+  .+|...        ...+.++..|++++ .+++|+++||
T Consensus       137 ~~r~~~~~~~~-~~~~~~~GG~~-~~~~~~~~~~~d~~~--~~~~~~--------~~~~~~~~~~~~~~-~~~~i~i~GG  203 (288)
T d1zgka1         137 TRRIGVGVAVL-NRLLYAVGGFD-GTNRLNSAECYYPER--NEWRMI--------TAMNTIRSGAGVCV-LHNCIYAAGG  203 (288)
T ss_dssp             SCCBSCEEEEE-TTEEEEECCBC-SSCBCCCEEEEETTT--TEEEEC--------CCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred             cccccceeeee-eecceEecCcc-cccccceEEEeeccc--cccccc--------cccccccccccccc-eeeeEEEecC
Confidence            88999999988 69999999985 445677899999999  999988        46777888888886 8999999999


Q ss_pred             cCCCCCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccceeeeecCCCcEEEEEcCccCCccccC
Q 016774          284 EDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPA  363 (383)
Q Consensus       284 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~~l~v~GG~~~~~~~~~  363 (383)
                      .+.. ...++.+.||..                  +.+|+.+.+   .|.+|..|++++.  +++|||+||....     
T Consensus       204 ~~~~-~~~~~~~~~~~~------------------~~~~~~~~~---~p~~r~~~~~~~~--~~~l~v~GG~~~~-----  254 (288)
T d1zgka1         204 YDGQ-DQLNSVERYDVE------------------TETWTFVAP---MKHRRSALGITVH--QGRIYVLGGYDGH-----  254 (288)
T ss_dssp             BCSS-SBCCCEEEEETT------------------TTEEEECCC---CSSCCBSCEEEEE--TTEEEEECCBCSS-----
T ss_pred             cccc-ccccceeeeeec------------------ceeeecccC---ccCcccceEEEEE--CCEEEEEecCCCC-----
Confidence            8764 457899999998                  678988855   7899999999888  7899999998442     


Q ss_pred             CCccccccCeeeEEEee
Q 016774          364 DTSGLRFDGRLLLVELV  380 (383)
Q Consensus       364 ~~~~~~~~~~~~~~~~~  380 (383)
                           .+.++++.||++
T Consensus       255 -----~~~~~v~~yd~~  266 (288)
T d1zgka1         255 -----TFLDSVECYDPD  266 (288)
T ss_dssp             -----CBCCEEEEEETT
T ss_pred             -----eecceEEEEECC
Confidence                 233456666654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.96  E-value=1.5e-28  Score=229.25  Aligned_cols=280  Identities=14%  Similarity=0.099  Sum_probs=194.6

Q ss_pred             ccccceeeeecCCCCCCCCCCCcccceeeeCCEEEEEccccCCC-----CCCCceEEEEeccCcccccceEEcCC-CCCC
Q 016774           18 LESVSCRNISDADGDLVLPNPRASHSLNFVSNCLVLFGGGCEGG-----RHLDDTWVAYVGNDFQGMLKWQKVNS-GIPS   91 (383)
Q Consensus        18 ~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-----~~~~~~~~~~~~~~~~~~~~W~~~~~-~~p~   91 (383)
                      |....|.+..+.      |..|.+++++..+++||++||.....     .....+++||+..     .+|+++.. ..|.
T Consensus         6 p~~g~W~~~~~~------p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t-----~~w~~~~~~~~~~   74 (387)
T d1k3ia3           6 PGLGRWGPTIDL------PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST-----GIVSDRTVTVTKH   74 (387)
T ss_dssp             TTSCEEEEEEEC------SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT-----CCBCCCEEEECSC
T ss_pred             CCCCccCCcCCC------CccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCC-----CcEeecCCCCCCc
Confidence            567789887644      66676666666688999999964331     1223456777744     49987642 2233


Q ss_pred             CCcceeEEEE-CCEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCCCCccccceeEEECCcEEEEEccc
Q 016774           92 GRFGHTCVVI-GDCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIAPPARGAHAACCIDNRKMVIHAGI  170 (383)
Q Consensus        92 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~  170 (383)
                      .+..++.+.. +++||++||...     +.+++||+       .+.+|+.+..   +|.+|..|+++.+.++++|++||.
T Consensus        75 ~~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~-------~~~~w~~~~~---~~~~r~~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3          75 DMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDS-------SSDSWIPGPD---MQVARGYQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             CCSSCEEEECTTSCEEEECSSST-----TCEEEEEG-------GGTEEEECCC---CSSCCSSCEEEECTTSCEEEECCC
T ss_pred             ccceeEEEEecCCcEEEeecCCC-----cceeEecC-------ccCccccccc---ccccccccceeeecCCceeeeccc
Confidence            4444455544 456999998643     46899999       6999998654   789999999999988899999998


Q ss_pred             CCCCCcccceEEEeccCCcccCceEEcccCCC------------------------------------------------
Q 016774          171 GLYGLRLGDTWVLELSENFCFGSWQQLVTHPS------------------------------------------------  202 (383)
Q Consensus       171 ~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~------------------------------------------------  202 (383)
                      .......+++++||+.++    +|+.++....                                                
T Consensus       140 ~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         140 WSGGVFEKNGEVYSPSSK----TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             CCSSSCCCCEEEEETTTT----EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             cccccccceeeeecCCCC----ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            777777899999999999    9998751100                                                


Q ss_pred             -------------CCCCCCceEEE-EcCCEEEEEcccCCCCCc--cccEEEEEcc---cCccceEEecccccCCCCCCCC
Q 016774          203 -------------PPARSGHSLTR-IGGNRTVLFGGRGVGYEV--LNDVWFLDVY---EGFFKWVQIPYELQNIPAGFSL  263 (383)
Q Consensus       203 -------------p~~r~~~~~~~-~~~~~i~v~GG~~~~~~~--~~~v~~~~~~---~~~~~W~~i~~~~~~~~~~~p~  263 (383)
                                   +.++.++++.. ..+++++++||.......  ......++..   .....|+.+        ..+|.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~p~  287 (387)
T d1k3ia3         216 KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS--------NGLYF  287 (387)
T ss_dssp             EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT--------TCCSS
T ss_pred             eeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeec--------ccccc
Confidence                         11111222211 135789999997432221  1122333222   111456555        67899


Q ss_pred             CceeeEEEEEcCCEEEEEcCcCCC-----CCCCCcEEEEEcCCCcccccccccccccccccccceeeccCCCCCCCccce
Q 016774          264 PRVGHSATLILGGRVLIYGGEDSA-----RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFH  338 (383)
Q Consensus       264 ~r~~~~~~~~~~~~l~i~GG~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~  338 (383)
                      +|..|+++++.+++||++||....     ......+++||++                  +.+|+.+.+   +|.+|.+|
T Consensus       288 ~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~------------------~~~W~~~~~---~~~~R~~H  346 (387)
T d1k3ia3         288 ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE------------------QDTFYKQNP---NSIVRVYH  346 (387)
T ss_dssp             CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG------------------GTEEEECCC---CSSCCCTT
T ss_pred             ccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECC------------------CCeEEECCC---CCCcccce
Confidence            999999998668899999997532     2335678889987                  789999865   89999999


Q ss_pred             eeeecCCCcEEEEEcCcc
Q 016774          339 RACPDYSGRYLYVFGGMV  356 (383)
Q Consensus       339 ~~~~~~~~~~l~v~GG~~  356 (383)
                      +++++..+++|||+||..
T Consensus       347 s~a~l~~dG~v~v~GG~~  364 (387)
T d1k3ia3         347 SISLLLPDGRVFNGGGGL  364 (387)
T ss_dssp             EEEEECTTSCEEEEECCC
T ss_pred             EEEEECCCCEEEEEeCCC
Confidence            988776677999999974

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.91  E-value=4.5e-24  Score=198.53  Aligned_cols=249  Identities=15%  Similarity=0.106  Sum_probs=174.2

Q ss_pred             hhccccccceeeeecCCCCCCCCCCCcccceeee-CCEEEEEccccCCCCCCCceEEEEeccCcccccceEEcCCCCCCC
Q 016774           14 QVTQLESVSCRNISDADGDLVLPNPRASHSLNFV-SNCLVLFGGGCEGGRHLDDTWVAYVGNDFQGMLKWQKVNSGIPSG   92 (383)
Q Consensus        14 ~~~~~~~~~W~~~~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~p~~   92 (383)
                      .+||+.+++|+.+.....    |..+.+++.+.. +++||++||.     ..+.+++||..++     +|.+++ .+|.+
T Consensus        55 ~~yd~~t~~w~~~~~~~~----~~~~~~~~~~~~~~g~i~v~Gg~-----~~~~~~~yd~~~~-----~w~~~~-~~~~~  119 (387)
T d1k3ia3          55 SSWDPSTGIVSDRTVTVT----KHDMFCPGISMDGNGQIVVTGGN-----DAKKTSLYDSSSD-----SWIPGP-DMQVA  119 (387)
T ss_dssp             EEECTTTCCBCCCEEEEC----SCCCSSCEEEECTTSCEEEECSS-----STTCEEEEEGGGT-----EEEECC-CCSSC
T ss_pred             EEEECCCCcEeecCCCCC----CcccceeEEEEecCCcEEEeecC-----CCcceeEecCccC-----cccccc-ccccc
Confidence            479999999988765422    444444544444 5699999884     2357889998655     999986 58889


Q ss_pred             CcceeEEEEC-CEEEEEcCccCCCCCccceeeeecccccCCcccccEEEccCCCCC------------------------
Q 016774           93 RFGHTCVVIG-DCLVLFGGINDRGNRHNDTWIGQIACHENLGITLSWRLLDVGSIA------------------------  147 (383)
Q Consensus        93 r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~~~~~~W~~~~~~~~~------------------------  147 (383)
                      |..|+++.+. +++|++||........+++++||+       .+++|+.+......                        
T Consensus       120 r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~-------~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (387)
T d1k3ia3         120 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP-------SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK  192 (387)
T ss_dssp             CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET-------TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGG
T ss_pred             ccccceeeecCCceeeeccccccccccceeeeecC-------CCCceeecCCCcccccccccccceeeccceeEEEEeCC
Confidence            9999999885 579999998777777899999999       58889876432100                        


Q ss_pred             ------------------------------------CCccccceeEE-ECCcEEEEEcccCCCCCc--ccceEEEe----
Q 016774          148 ------------------------------------PPARGAHAACC-IDNRKMVIHAGIGLYGLR--LGDTWVLE----  184 (383)
Q Consensus       148 ------------------------------------p~~r~~~~~~~-~~~~~i~v~GG~~~~~~~--~~~~~~~d----  184 (383)
                                                          +..+.+++++. ..++++|++||.......  ......++    
T Consensus       193 G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~  272 (387)
T d1k3ia3         193 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP  272 (387)
T ss_dssp             GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred             CCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeeccccccc
Confidence                                                11111222222 134589999997433211  11222222    


Q ss_pred             -ccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCC-----CCCccccEEEEEcccCccceEEecccccCCC
Q 016774          185 -LSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGV-----GYEVLNDVWFLDVYEGFFKWVQIPYELQNIP  258 (383)
Q Consensus       185 -~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~-----~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~  258 (383)
                       ...+    .|+.+.  .+|.+|..|+++.+.+++||++||...     .......+++||+++  ++|+++        
T Consensus       273 ~~~~~----~~~~~~--~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~--~~W~~~--------  336 (387)
T d1k3ia3         273 GTSPN----TVFASN--GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ--DTFYKQ--------  336 (387)
T ss_dssp             TSCCE----EEECTT--CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG--TEEEEC--------
T ss_pred             ccCCC----ceeecc--ccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCC--CeEEEC--------
Confidence             2222    555555  789999999999997789999999742     234566789999999  999999        


Q ss_pred             CCCCCCceeeEEEEE-cCCEEEEEcCcCCCC--CCCCcEEEEEcC
Q 016774          259 AGFSLPRVGHSATLI-LGGRVLIYGGEDSAR--RRKDDFWVLDTK  300 (383)
Q Consensus       259 ~~~p~~r~~~~~~~~-~~~~l~i~GG~~~~~--~~~~~~~~~d~~  300 (383)
                      ..+|.+|..|+++++ .++++||+||.....  ....++++|++.
T Consensus       337 ~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Pp  381 (387)
T d1k3ia3         337 NPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN  381 (387)
T ss_dssp             CCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred             CCCCCcccceEEEEECCCCEEEEEeCCCcCCCCcccceEEEEcch
Confidence            578999999987764 588999999964332  235678999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.64  E-value=1.5  Score=35.65  Aligned_cols=68  Identities=7%  Similarity=-0.017  Sum_probs=36.6

Q ss_pred             EECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCC-CCCCceEEEEcCCEEEEEcccCCCCCccccEE
Q 016774          158 CIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW  236 (383)
Q Consensus       158 ~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~  236 (383)
                      ...++..++.|+.+      ..+..+|+.++    ....... .... ...-.++....++.+++.|+.+.      .|.
T Consensus       187 ~~~~~~~l~~~~~d------~~i~~~~~~~~----~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~sgs~dg------~i~  249 (299)
T d1nr0a2         187 FSNNGAFLVATDQS------RKVIPYSVANN----FELAHTN-SWTFHTAKVACVSWSPDNVRLATGSLDN------SVI  249 (299)
T ss_dssp             ECTTSSEEEEEETT------SCEEEEEGGGT----TEESCCC-CCCCCSSCEEEEEECTTSSEEEEEETTS------CEE
T ss_pred             cccccccccccccc------ccccccccccc----ccccccc-cccccccccccccccccccceEEEcCCC------EEE
Confidence            33444566666542      34889998876    3332221 1111 11112233334567788887642      488


Q ss_pred             EEEccc
Q 016774          237 FLDVYE  242 (383)
Q Consensus       237 ~~~~~~  242 (383)
                      ++|+++
T Consensus       250 iwd~~~  255 (299)
T d1nr0a2         250 VWNMNK  255 (299)
T ss_dssp             EEETTC
T ss_pred             EEECCC
Confidence            999887

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.67  E-value=2.7  Score=33.87  Aligned_cols=109  Identities=14%  Similarity=0.076  Sum_probs=57.2

Q ss_pred             CCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEE
Q 016774          160 DNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD  239 (383)
Q Consensus       160 ~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~  239 (383)
                      .++.+++.|+.+      ..+..+|+++.    +..++.....+  ..-.++....++..++.|+.+.      .+..||
T Consensus       146 ~~~~~l~~g~~d------g~i~~~d~~~~----~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~------~i~~~~  207 (299)
T d1nr0a2         146 NDKQFVAVGGQD------SKVHVYKLSGA----SVSEVKTIVHP--AEITSVAFSNNGAFLVATDQSR------KVIPYS  207 (299)
T ss_dssp             TTSCEEEEEETT------SEEEEEEEETT----EEEEEEEEECS--SCEEEEEECTTSSEEEEEETTS------CEEEEE
T ss_pred             cccccccccccc------ccccccccccc----ccccccccccc--cccccccccccccccccccccc------cccccc
Confidence            445666777642      35788888776    54444311111  1112333333456666776532      489999


Q ss_pred             cccCccceEEecccccCCCCCCCCCc-eeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          240 VYEGFFKWVQIPYELQNIPAGFSLPR-VGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       240 ~~~~~~~W~~i~~~~~~~~~~~p~~r-~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                      +.+  .......       ..+.... .-.++....++.+++.|+.++      .+.++|+++
T Consensus       208 ~~~--~~~~~~~-------~~~~~h~~~v~~l~~s~~~~~l~sgs~dg------~i~iwd~~~  255 (299)
T d1nr0a2         208 VAN--NFELAHT-------NSWTFHTAKVACVSWSPDNVRLATGSLDN------SVIVWNMNK  255 (299)
T ss_dssp             GGG--TTEESCC-------CCCCCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTC
T ss_pred             ccc--ccccccc-------ccccccccccccccccccccceEEEcCCC------EEEEEECCC
Confidence            877  5443221       1111111 112222225778888888765      378888873

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.03  E-value=6.3  Score=31.62  Aligned_cols=102  Identities=14%  Similarity=0.138  Sum_probs=52.0

Q ss_pred             EEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEEEEEccc
Q 016774          163 KMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE  242 (383)
Q Consensus       163 ~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~~~~~~  242 (383)
                      ..++.|+.+      ..+..+|+.+.    +-.....  ..  ...-.++... +.+++.|+.+      ..+.+||+..
T Consensus       188 ~~l~s~~~d------g~i~~~d~~~~----~~~~~~~--~~--~~~v~~~~~~-~~~l~s~s~d------~~i~iwd~~~  246 (342)
T d2ovrb2         188 IHVVSGSLD------TSIRVWDVETG----NCIHTLT--GH--QSLTSGMELK-DNILVSGNAD------STVKIWDIKT  246 (342)
T ss_dssp             SEEEEEETT------SCEEEEETTTC----CEEEEEC--CC--CSCEEEEEEE-TTEEEEEETT------SCEEEEETTT
T ss_pred             CEEEEEeCC------CeEEEeecccc----eeeeEec--cc--ccceeEEecC-CCEEEEEcCC------CEEEEEeccc
Confidence            455555542      34788888765    3322221  11  1112233443 4566777663      2488899876


Q ss_pred             CccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCC
Q 016774          243 GFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKA  301 (383)
Q Consensus       243 ~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~  301 (383)
                        .+-....       ...........+.. .++.+++.|+.++      .+.++|+.+
T Consensus       247 --~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~s~s~Dg------~i~iwd~~t  289 (342)
T d2ovrb2         247 --GQCLQTL-------QGPNKHQSAVTCLQ-FNKNFVITSSDDG------TVKLWDLKT  289 (342)
T ss_dssp             --CCEEEEE-------CSTTSCSSCEEEEE-ECSSEEEEEETTS------EEEEEETTT
T ss_pred             --ccccccc-------cccceeeeceeecc-cCCCeeEEEcCCC------EEEEEECCC
Confidence              4433321       11111112222232 5667778887765      378888873

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=85.26  E-value=13  Score=33.53  Aligned_cols=123  Identities=13%  Similarity=0.095  Sum_probs=65.1

Q ss_pred             ceeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCC------CCCCCCCceEEEEcCCEEEEEcccCC
Q 016774          154 HAACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHP------SPPARSGHSLTRIGGNRTVLFGGRGV  227 (383)
Q Consensus       154 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~------~p~~r~~~~~~~~~~~~i~v~GG~~~  227 (383)
                      .+.++.++ .||+...       .+.++.+|.+|+  ...|+.-....      ............. ++++|+....  
T Consensus        60 stPiv~~g-~vyv~t~-------~~~v~AlDa~tG--~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--  126 (560)
T d1kv9a2          60 ATPLFHDG-VIYTSMS-------WSRVIAVDAASG--KELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTLD--  126 (560)
T ss_dssp             CCCEEETT-EEEEEEG-------GGEEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECTT--
T ss_pred             eCCEEECC-EEEEECC-------CCeEEEEeCCCC--CEEEEECCCCCccccccccccccccCccee-CCeEEEEeCC--
Confidence            34455565 9998754       356899999886  56787543100      0111111223344 4666655332  


Q ss_pred             CCCccccEEEEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCC
Q 016774          228 GYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI  302 (383)
Q Consensus       228 ~~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~  302 (383)
                           ..++.+|..++...|+.-.       ..........+..++.++.+++ |+..........+..||.++-
T Consensus       127 -----g~l~Alda~tG~~~w~~~~-------~~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG  188 (560)
T d1kv9a2         127 -----GRLIALDAKTGKAIWSQQT-------TDPAKPYSITGAPRVVKGKVII-GNGGAEYGVRGFVSAYDADTG  188 (560)
T ss_dssp             -----SEEEEEETTTCCEEEEEEC-------SCTTSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTC
T ss_pred             -----CEEEEEECCCCcEEeccCc-------cCcccceeeeeeeeeecCcccc-cccceeccccceEEEEECCCc
Confidence                 2489999888667787752       2222222211222235666554 443332333456788887754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.55  E-value=8.8  Score=32.00  Aligned_cols=104  Identities=10%  Similarity=0.132  Sum_probs=56.1

Q ss_pred             EEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCCCCCCCCCceEEEEcCCEEEEEcccCCCCCccccEE
Q 016774          157 CCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW  236 (383)
Q Consensus       157 ~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~i~v~GG~~~~~~~~~~v~  236 (383)
                      +...++.+++.|+.+      ..+.+||.+++    ++..+..-. -....-.++..-.++.+++.||.+.      .|.
T Consensus        14 ~~s~dg~~la~~~~~------~~i~iw~~~~~----~~~~~~~l~-gH~~~V~~l~fsp~~~~l~s~s~D~------~i~   76 (371)
T d1k8kc_          14 AWNKDRTQIAICPNN------HEVHIYEKSGN----KWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDR------NAY   76 (371)
T ss_dssp             EECTTSSEEEEECSS------SEEEEEEEETT----EEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTS------CEE
T ss_pred             EECCCCCEEEEEeCC------CEEEEEECCCC----CEEEEEEec-CCCCCEEEEEECCCCCEEEEEECCC------eEE
Confidence            334455677777642      35888898887    777665100 0011112233334566777777642      488


Q ss_pred             EEEcccCccceEEecccccCCCCCCCCCceeeEEEEEcCCEEEEEcCcCC
Q 016774          237 FLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS  286 (383)
Q Consensus       237 ~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~~~~~~~~~~~l~i~GG~~~  286 (383)
                      ++|+.+  ..|....       ......+.-.++....++..++.|+.++
T Consensus        77 vWd~~~--~~~~~~~-------~~~~~~~~v~~i~~~p~~~~l~~~s~d~  117 (371)
T d1k8kc_          77 VWTLKG--RTWKPTL-------VILRINRAARCVRWAPNEKKFAVGSGSR  117 (371)
T ss_dssp             EEEEET--TEEEEEE-------ECCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeecc--ccccccc-------ccccccccccccccccccccceeecccC
Confidence            889988  8887663       1111112222333225667777776544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=80.46  E-value=20  Score=32.26  Aligned_cols=122  Identities=12%  Similarity=0.079  Sum_probs=64.2

Q ss_pred             eeEEECCcEEEEEcccCCCCCcccceEEEeccCCcccCceEEcccCC------CCCCCCCceEEEEcCCEEEEEcccCCC
Q 016774          155 AACCIDNRKMVIHAGIGLYGLRLGDTWVLELSENFCFGSWQQLVTHP------SPPARSGHSLTRIGGNRTVLFGGRGVG  228 (383)
Q Consensus       155 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~------~p~~r~~~~~~~~~~~~i~v~GG~~~~  228 (383)
                      +.++.++ .||+...       .+.++.+|.+|+  +..|+.-...+      ...........+. ++++|+....   
T Consensus        72 tPiv~~g-~vyv~t~-------~~~v~AlDa~TG--~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~~~t~~---  137 (573)
T d1kb0a2          72 TPVVVDG-IMYVSAS-------WSVVHAIDTRTG--NRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVGAWD---  137 (573)
T ss_dssp             CCEEETT-EEEEECG-------GGCEEEEETTTT--EEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEECTT---
T ss_pred             CCEEECC-EEEEECC-------CCeEEEEeCCCC--CeEEEeCCCCCcccccccccccccccceEE-CCcEEEEecc---
Confidence            3445555 8998653       356899999886  45787543100      0011111223344 5776654322   


Q ss_pred             CCccccEEEEEcccCccceEEecccccCCCCCCCCCcee-eEEEEEcCCEEEEEcCcCCCCCCCCcEEEEEcCCC
Q 016774          229 YEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVG-HSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI  302 (383)
Q Consensus       229 ~~~~~~v~~~~~~~~~~~W~~i~~~~~~~~~~~p~~r~~-~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~d~~~~  302 (383)
                          ..++.+|..++...|+.-.       ...+..... .+..++.++.+|+ |+..........+..||..+-
T Consensus       138 ----g~l~alda~tG~~~W~~~~-------~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG  200 (573)
T d1kb0a2         138 ----GRLIALDAATGKEVWHQNT-------FEGQKGSLTITGAPRVFKGKVII-GNGGAEYGVRGYITAYDAETG  200 (573)
T ss_dssp             ----SEEEEEETTTCCEEEEEET-------TTTCCSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTC
T ss_pred             ----cceeeeccccccceecccC-------ccCCcceEEeecceEEEeccEEE-eeccccccccceEEEEecCCc
Confidence                2488999988667797752       112222111 1112225666554 544433333456888887743