Citrus Sinensis ID: 016776

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
MAIDCIKNIPTMLHQPKEEYKDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQKHYRADMKTLEVFTNWLQQKKQLK
cccccccccccccccccHHHHccccccEEEccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccEEEcccccccccccccccEEEEEEEEcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEccccccccccccccccccccccccEEEEccccccEEEEEccEEEEEccccccEEEEEccHHHHHHcccccccccEEEEcccccEEEEEEEEccccccEEEcccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHccc
ccEEEEccccccccccHHHHccccccEEEEHHHHcccccccHHcccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEcccccccccHHHEEEEEEccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEEcccHHHcccccccccccEEHHHHHHHHHHHccccHHHHHHHHHHHHHccccc
maidcikniptmlhqpkeeykdeqkplvfdasvlkhqtqipkqfiwpddekpcvnapelqvplidlggflsddpVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLgehcgyassftgrfssklpwketLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSimrlnyyppcqkpeltlgtgphcdptsltilhqdqvgglQVFVenewrsispnfEAFVVNIGDTFMAlsngrykscLHRAVVNSQTTRKSLAFflcpkndkvvsppselvdtysspriypdftwpmLLEFTQKHYRADMKTLEVFTNWLQQKKQLK
maidcikniptmlhqpkeeYKDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHCgyassftgrfssklpWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFlcpkndkvvsppselvdtysspriypdfTWPMLLEFTQKHYRADMKTLEVFTNWLQQKKQLK
MAIDCIKNIPTMLHQPKEEYKDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQKHYRADMKTLEVFTNWLQQKKQLK
**************************LVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQKHYRADMKTLEVFTNWL*******
*******************************S*****TQIPKQFIWPDDEK*****PELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQKHYRADMKTLEVFTNW*QQ*****
MAIDCIKNIPTMLHQPKEEYKDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQKHYRADMKTLEVFTNWLQQKKQLK
*AIDCIKNIPTMLHQPKE***DEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQKHYRADMKTLEVFTNWLQQK****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIDCIKNIPTMLHQPKEEYKDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQKHYRADMKTLEVFTNWLQQKKQLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
Q39110377 Gibberellin 20 oxidase 1 yes no 0.979 0.994 0.671 1e-150
Q39111378 Gibberellin 20 oxidase 2 no no 0.963 0.976 0.664 1e-147
O04705361 Gibberellin 20 oxidase 1- N/A no 0.913 0.969 0.687 1e-144
Q39112380 Gibberellin 20 oxidase 3 no no 0.986 0.994 0.627 1e-143
O04706365 Gibberellin 20 oxidase 1- N/A no 0.900 0.945 0.688 1e-142
O04707365 Gibberellin 20 oxidase 1- N/A no 0.900 0.945 0.688 1e-142
P93771372 Gibberellin 20 oxidase 1 yes no 0.926 0.954 0.610 1e-128
Q0JH50389 Gibberellin 20 oxidase 2 no no 0.879 0.866 0.551 1e-104
P0C5H5389 Gibberellin 20 oxidase 2 N/A no 0.879 0.866 0.551 1e-104
D4N502360 Codeine O-demethylase OS= N/A no 0.723 0.769 0.371 3e-43
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function desciption
 Score =  530 bits (1366), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/378 (67%), Positives = 299/378 (79%), Gaps = 3/378 (0%)

Query: 1   MAIDCIKNIPTMLHQPKEEYKDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQ 60
           MA+  +   P    +PK    + Q PL+F+ S+L  Q  IP QFIWPDDEKP +N  EL 
Sbjct: 1   MAVSFVTTSPEEEDKPKLGLGNIQTPLIFNPSMLNLQANIPNQFIWPDDEKPSINVLELD 60

Query: 61  VPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELP 120
           VPLIDL   LSD P +  +ASRL+ EAC+KHGFFLVVNHG+   LI+DAH Y   FF++P
Sbjct: 61  VPLIDLQNLLSD-PSSTLDASRLISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMP 119

Query: 121 LNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGD 180
           L+EKQR  RK GE  GYASSFTGRFS+KLPWKETLSFR+  + S S + V+DY  + +G 
Sbjct: 120 LSEKQRVLRKSGESVGYASSFTGRFSTKLPWKETLSFRFCDDMSRSKS-VQDYFCDALGH 178

Query: 181 EFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKP 240
            F+ FG+VYQ+YCE+MS LSL IMELL +SLGV R +F+EFFEENDSIMRLNYYPPC KP
Sbjct: 179 GFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKP 238

Query: 241 ELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRY 300
           +LTLGTGPHCDPTSLTILHQD V GLQVFVEN+WRSI PN +AFVVNIGDTFMALSN RY
Sbjct: 239 DLTLGTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRY 298

Query: 301 KSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQK 360
           KSCLHRAVVNS++ RKSLAFFLCPK D+VV+PP EL+D+ +S R YPDFTW M LEFTQK
Sbjct: 299 KSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRR-YPDFTWSMFLEFTQK 357

Query: 361 HYRADMKTLEVFTNWLQQ 378
           HYRADM TL+ F++WL +
Sbjct: 358 HYRADMNTLQAFSDWLTK 375
Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. GA53 is less effectively oxidized than GA12, and GA25 is also formed as a minor product.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q39111|GAOX2_ARATH Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|Q39112|GAOX3_ARATH Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|P93771|GAOX1_ORYSJ Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|Q0JH50|GAOX2_ORYSJ Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|P0C5H5|GAOX2_ORYSI Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
8919865383 gibberellin 20-oxidase [Citrus sinensis 1.0 1.0 0.992 0.0
365176182379 gibberellin 20 oxidase 1 [Castanea molli 0.984 0.994 0.836 0.0
222875434379 gibberellin 20-oxidase [Gossypium hirsut 0.984 0.994 0.828 0.0
255539617378 gibberellin 20-oxidase, putative [Ricinu 0.986 1.0 0.792 0.0
18496057379 gibberellin 20-oxidase 1 [Fagus sylvatic 0.984 0.994 0.815 0.0
2262201382 gibberellin 20-oxidase [Phaseolus vulgar 0.984 0.986 0.794 0.0
28316358385 gibberellin 20-oxidase [Populus nigra] g 0.984 0.979 0.802 0.0
224136854385 gibberellin 20-oxidase [Populus trichoca 0.984 0.979 0.799 0.0
233142142385 gibberellin 20-oxidase [Populus simonii] 0.984 0.979 0.799 0.0
356574452383 PREDICTED: gibberellin 20 oxidase 2-like 0.986 0.986 0.787 1e-180
>gi|8919865|emb|CAB96202.1| gibberellin 20-oxidase [Citrus sinensis x Citrus trifoliata] gi|213876867|gb|ACJ54435.1| gibberellin 20-oxidase 1 [Citrus sinensis x Citrus trifoliata] Back     alignment and taxonomy information
 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/383 (99%), Positives = 381/383 (99%)

Query: 1   MAIDCIKNIPTMLHQPKEEYKDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQ 60
           MAIDCIKNIPTMLHQPKEEYKDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQ
Sbjct: 1   MAIDCIKNIPTMLHQPKEEYKDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQ 60

Query: 61  VPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELP 120
           VPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELP
Sbjct: 61  VPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELP 120

Query: 121 LNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGD 180
           LNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGD
Sbjct: 121 LNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGD 180

Query: 181 EFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKP 240
           EFKQFGRVYQDYCESMSRLSLGIMELLAISLGV RAHFKEFFEENDSIMRLNYYPPCQKP
Sbjct: 181 EFKQFGRVYQDYCESMSRLSLGIMELLAISLGVGRAHFKEFFEENDSIMRLNYYPPCQKP 240

Query: 241 ELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRY 300
           ELTLGTGPHCDPTSLTILHQDQVGGLQVFV+NEWRSISPNFEAFVVNIGDTFMALSNGRY
Sbjct: 241 ELTLGTGPHCDPTSLTILHQDQVGGLQVFVDNEWRSISPNFEAFVVNIGDTFMALSNGRY 300

Query: 301 KSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQK 360
           KSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQK
Sbjct: 301 KSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQK 360

Query: 361 HYRADMKTLEVFTNWLQQKKQLK 383
           HYRADMKTLE FTNWLQQKKQLK
Sbjct: 361 HYRADMKTLEAFTNWLQQKKQLK 383

Source: Citrus sinensis x Citrus trifoliata

Species: Citrus sinensis x Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|365176182|gb|AEW67997.1| gibberellin 20 oxidase 1 [Castanea mollissima] Back     alignment and taxonomy information
>gi|222875434|gb|ACM68923.1| gibberellin 20-oxidase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255539617|ref|XP_002510873.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223549988|gb|EEF51475.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18496057|emb|CAD21846.1| gibberellin 20-oxidase 1 [Fagus sylvatica] Back     alignment and taxonomy information
>gi|2262201|gb|AAC49756.1| gibberellin 20-oxidase [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|28316358|dbj|BAC56962.1| gibberellin 20-oxidase [Populus nigra] gi|28316360|dbj|BAC56963.1| gibberellin 20-oxidase [Populus nigra] gi|333411312|gb|AEF32526.1| gibberellin 20-oxidase [Populus simonii x Populus nigra] Back     alignment and taxonomy information
>gi|224136854|ref|XP_002322432.1| gibberellin 20-oxidase [Populus trichocarpa] gi|118489893|gb|ABK96744.1| unknown [Populus trichocarpa x Populus deltoides] gi|222869428|gb|EEF06559.1| gibberellin 20-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|233142142|gb|ACQ91097.1| gibberellin 20-oxidase [Populus simonii] Back     alignment and taxonomy information
>gi|356574452|ref|XP_003555361.1| PREDICTED: gibberellin 20 oxidase 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
TAIR|locus:2005511377 GA20OX1 [Arabidopsis thaliana 0.973 0.989 0.675 1.1e-137
TAIR|locus:2165341378 GA20OX2 "gibberellin 20 oxidas 0.963 0.976 0.664 5.2e-136
TAIR|locus:2182875380 GA20OX3 "gibberellin 20-oxidas 0.981 0.989 0.630 1.9e-131
TAIR|locus:2206036376 GA20OX4 "gibberellin 20-oxidas 0.963 0.981 0.635 3.6e-128
UNIPROTKB|P93771372 20ox1 "Gibberellin 20 oxidase 0.926 0.954 0.610 3.8e-117
UNIPROTKB|Q69LD8367 OSJNBa0050F10.19 "Putative gib 0.903 0.942 0.538 1.4e-105
UNIPROTKB|Q6L4Y3408 OSJNBb0092E21.11 "Putative gib 0.885 0.830 0.514 1.2e-88
TAIR|locus:2037159385 GA20OX5 "gibberellin 20-oxidas 0.955 0.950 0.446 6.9e-86
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.856 0.884 0.362 6.9e-47
TAIR|locus:2085879349 AT3G19010 [Arabidopsis thalian 0.801 0.879 0.344 6.4e-44
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1348 (479.6 bits), Expect = 1.1e-137, P = 1.1e-137
 Identities = 254/376 (67%), Positives = 298/376 (79%)

Query:     1 MAIDCIKNIPTMLHQPKEEYKDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQ 60
             MA+  +   P    +PK    + Q PL+F+ S+L  Q  IP QFIWPDDEKP +N  EL 
Sbjct:     1 MAVSFVTTSPEEEDKPKLGLGNIQTPLIFNPSMLNLQANIPNQFIWPDDEKPSINVLELD 60

Query:    61 VPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELP 120
             VPLIDL   LSD P +  +ASRL+ EAC+KHGFFLVVNHG+   LI+DAH Y   FF++P
Sbjct:    61 VPLIDLQNLLSD-PSSTLDASRLISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMP 119

Query:   121 LNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGD 180
             L+EKQR  RK GE  GYASSFTGRFS+KLPWKETLSFR+  + S S + V+DY  + +G 
Sbjct:   120 LSEKQRVLRKSGESVGYASSFTGRFSTKLPWKETLSFRFCDDMSRSKS-VQDYFCDALGH 178

Query:   181 EFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKP 240
              F+ FG+VYQ+YCE+MS LSL IMELL +SLGV R +F+EFFEENDSIMRLNYYPPC KP
Sbjct:   179 GFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKP 238

Query:   241 ELTLGTGPHCDPTSLTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRY 300
             +LTLGTGPHCDPTSLTILHQD V GLQVFVEN+WRSI PN +AFVVNIGDTFMALSN RY
Sbjct:   239 DLTLGTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRY 298

Query:   301 KSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQK 360
             KSCLHRAVVNS++ RKSLAFFLCPK D+VV+PP EL+D+ +S R YPDFTW M LEFTQK
Sbjct:   299 KSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRR-YPDFTWSMFLEFTQK 357

Query:   361 HYRADMKTLEVFTNWL 376
             HYRADM TL+ F++WL
Sbjct:   358 HYRADMNTLQAFSDWL 373
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;TAS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS
GO:0045544 "gibberellin 20-oxidase activity" evidence=IDA;TAS
GO:0009686 "gibberellin biosynthetic process" evidence=IDA;RCA;TAS
GO:0009826 "unidimensional cell growth" evidence=IGI
GO:0009908 "flower development" evidence=IGI
GO:0048366 "leaf development" evidence=IMP
GO:0009688 "abscisic acid biosynthetic process" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0016114 "terpenoid biosynthetic process" evidence=RCA
GO:0048608 "reproductive structure development" evidence=RCA
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0048575 "short-day photoperiodism, flowering" evidence=IEP
TAIR|locus:2165341 GA20OX2 "gibberellin 20 oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182875 GA20OX3 "gibberellin 20-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206036 GA20OX4 "gibberellin 20-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P93771 20ox1 "Gibberellin 20 oxidase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69LD8 OSJNBa0050F10.19 "Putative gibberellin 20-dioxygenase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6L4Y3 OSJNBb0092E21.11 "Putative gibberellin 20-oxidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2037159 GA20OX5 "gibberellin 20-oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085879 AT3G19010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0C5H5GAOX2_ORYSI1, ., 1, 4, ., 1, 1, ., -0.55100.87980.8663N/Ano
O04705GAO1D_WHEAT1, ., 1, 4, ., 1, 1, ., -0.68730.91380.9695N/Ano
O04706GAO1B_WHEAT1, ., 1, 4, ., 1, 1, ., -0.68850.90070.9452N/Ano
O04707GAO1A_WHEAT1, ., 1, 4, ., 1, 1, ., -0.68850.90070.9452N/Ano
Q39110GAOX1_ARATH1, ., 1, 4, ., 1, 1, ., -0.67190.97910.9946yesno
P93771GAOX1_ORYSJ1, ., 1, 4, ., 1, 1, ., -0.61030.92680.9543yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer1.14.11.9LOW CONFIDENCE prediction!
3rd Layer1.14.11.13LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GA20-ox
SubName- Full=Giberellin 20-oxidase; Flags- Fragment; (386 aa)
(Populus trichocarpa)
Predicted Functional Partners:
GA2ox3
gibberellin 2-oxidase (332 aa)
  •  •••0.919
GA3ox1
gibberellin 3-oxidase (EC-1.14.11.15) (372 aa)
  •  •••0.918
GA2ox6
gibberellin 2-oxidase (332 aa)
  •  •••0.915
grail3.0032017101
annotation not avaliable (81 aa)
     •  0.899
CYP88A8
cytochrome P450 probable ent-kaurenoic acid oxidase (EC-1.14.13.79) (490 aa)
     •  0.899
CYP88A9
cytochrome P450 probable ent-kaurenoic acid oxidase (EC-1.14.13.79) (493 aa)
     •  0.899
CPS1
copalyl diphosphate synthase (EC-5.5.1.13) (795 aa)
      • 0.686
CPS2
copalyl diphosphate synthase (EC-5.5.1.13) (807 aa)
      • 0.686
gw1.XIV.2884.1
cytokinin biosynthetic isopentenyltransferase (260 aa)
      • 0.510
gw1.X.4133.1
cytokinin biosynthetic isopentenyltransferase (294 aa)
      • 0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 0.0
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 3e-69
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-65
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 3e-58
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-56
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 7e-55
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 7e-53
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-52
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 6e-51
PLN02704335 PLN02704, PLN02704, flavonol synthase 2e-48
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-48
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-47
PLN02216357 PLN02216, PLN02216, protein SRG1 7e-45
PLN02904357 PLN02904, PLN02904, oxidoreductase 8e-39
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-37
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-36
PLN02997325 PLN02997, PLN02997, flavonol synthase 3e-36
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 3e-34
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 2e-32
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 7e-31
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-30
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 5e-29
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 1e-28
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 4e-28
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-27
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-27
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-20
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 4e-09
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information 
 Score =  750 bits (1938), Expect = 0.0
 Identities = 262/360 (72%), Positives = 295/360 (81%), Gaps = 2/360 (0%)

Query: 21  KDEQKPLVFDASVLKHQTQIPKQFIWPDDEKPCVNAPELQVPLIDLGGFLSDDPVAAKEA 80
           K EQ  LVFDASVL+ Q+ IP QFIWPD+EKP    PEL VPLIDLGGFLS D  A  EA
Sbjct: 1   KREQGSLVFDASVLQKQSNIPAQFIWPDEEKPSAAVPELAVPLIDLGGFLSGDEAATAEA 60

Query: 81  SRLVGEACRKHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRARRKLGEHCGYASS 140
           +RLV EAC KHGFF VVNHGVD++LI  AH YMD FF+LPL+EKQRA+RK GE CGYASS
Sbjct: 61  ARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGYASS 120

Query: 141 FTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLS 200
            TGRFSSKLPWKETLSF Y A+   S+ +V DY  + +G++F+QFG+VYQ+YCE+M  LS
Sbjct: 121 HTGRFSSKLPWKETLSFGYHADGG-SSPVVVDYFKSVLGEDFEQFGKVYQEYCEAMKTLS 179

Query: 201 LGIMELLAISLGVDRAHFKEFFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQ 260
           L IMELL ISLGVDR ++++FFE+ DSIMR NYYPPCQ+PELTLGTGPHCDPTSLTILHQ
Sbjct: 180 LKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQ 239

Query: 261 DQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAF 320
           DQVGGLQVFV+N+WRS+ P   A VVNIGDTFMALSNGRYKSCLHRAVVNS+  R+SLAF
Sbjct: 240 DQVGGLQVFVDNKWRSVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAF 299

Query: 321 FLCPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLEFTQKHYRADMKTLEVFTNWLQQKK 380
           FLCPK DKVV PP ELVD    PR YPDFTW  LLEFTQKHYRADM TL+ F+NWLQ   
Sbjct: 300 FLCPKEDKVVRPPQELVDR-EGPRKYPDFTWSDLLEFTQKHYRADMNTLQAFSNWLQSSN 358

Length = 361
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02904357 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.91
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PLN03176120 flavanone-3-hydroxylase; Provisional 99.9
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.26
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.56
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.17
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 89.3
TIGR02466201 conserved hypothetical protein. This family consis 85.23
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=8.5e-85  Score=638.44  Aligned_cols=334  Identities=27%  Similarity=0.496  Sum_probs=297.4

Q ss_pred             hhHhhhc-cCCCCCCCCCCCCCCCCCCC---CCCCCcceeeCCCCCCCCHHHHHHHHHHHHHHhhhcceEEEeccCCCHH
Q 016776           29 FDASVLK-HQTQIPKQFIWPDDEKPCVN---APELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNHGVDSS  104 (383)
Q Consensus        29 v~~~~~~-~~~~vP~~yi~p~~~~~~~~---~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFF~l~nHGi~~~  104 (383)
                      ||.|+.+ ++++||++||+|++++|...   ....+||||||+.+.+++.  +.+++++|++||++||||||+||||+.+
T Consensus        17 ~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~--~~~~~~~l~~Ac~~~GFF~v~nHGI~~~   94 (357)
T PLN02216         17 VQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTA--MDSEVEKLDFACKEWGFFQLVNHGIDSS   94 (357)
T ss_pred             HHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCcc--HHHHHHHHHHHHHHCcEEEEECCCCCHH
Confidence            7888876 89999999999999987531   1125799999999876543  3468899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHhhccCCCccccCCCCCCcccCCCCceeceecccccccccCchhhhhhhcccCChhhHH
Q 016776          105 LIADAHRYMDHFFELPLNEKQRARRKLGEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQ  184 (383)
Q Consensus       105 l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~~~~wP~~~~~~~~~~  184 (383)
                      +++++++++++||+||.|+|+++....+..+||+.......++..||+|.|.+...|...   ...+.||..+     +.
T Consensus        95 li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~---~~~~~WP~~p-----~~  166 (357)
T PLN02216         95 FLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRL---RKPHLFPKLP-----LP  166 (357)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCccc---ccchhcccch-----HH
Confidence            999999999999999999999997765567899766544445678999999886555332   3357788754     68


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhhcC-ccceeEEeecCCCCCCCCccccccccCCCceeEEec-CC
Q 016776          185 FGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFEE-NDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQ-DQ  262 (383)
Q Consensus       185 fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~~-~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q-d~  262 (383)
                      ||+++++|+++|.+|+.+||++||++|||++++|.+++.. ..+.||+||||||++++.++|+++|||+|+||||+| ++
T Consensus       167 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~  246 (357)
T PLN02216        167 FRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNE  246 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCC
Confidence            9999999999999999999999999999999999998875 457899999999999999999999999999999999 57


Q ss_pred             CCCeEEEeCCeEEEecCCCCceEEeeccccccccCCeecCcccccccCCCCCeeeeccccCCCCCceEeCCccccCCCCC
Q 016776          263 VGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPKNDKVVSPPSELVDTYSS  342 (383)
Q Consensus       263 ~~GLqV~~~g~W~~V~p~pgalvVnvGD~L~~lSnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~P~~~~~~~~~~  342 (383)
                      ++||||+++|+|++|+|+||++||||||+||+||||+|||++|||++++.++|||++||++|+.|++|.|+++|+++ ++
T Consensus       247 v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~-~~  325 (357)
T PLN02216        247 VEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVER-QK  325 (357)
T ss_pred             CCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCC-CC
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999 89


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhcchHHHHH
Q 016776          343 PRIYPDFTWPMLLEFTQKHYRADMKTLEVFT  373 (383)
Q Consensus       343 p~~y~~~~~~ey~~~~~~~~~~~~~~l~~~~  373 (383)
                      |++|+++||+||+....++...++..|+.|+
T Consensus       326 p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~  356 (357)
T PLN02216        326 AALFKSLTTKEYFDGLFSRELDGKAYLDAMR  356 (357)
T ss_pred             CCCCCCcCHHHHHHHHHhcccCCcchhhhhc
Confidence            9999999999999988888877888887775

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-36
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-36
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 9e-35
1w9y_A319 The Structure Of Acc Oxidase Length = 319 8e-26
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-15
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 3e-15
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 8e-15
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-09
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 161/334 (48%), Gaps = 29/334 (8%)
Query: 40  IPKQFIWPDDEKPCVNAPEL--------QVPLIDLGGFLSDDPVAAKEASRLVGEACRKH 91
           IPK++I P +E   +N   L        QVP IDL    SDD    +     + +A    
Sbjct: 18  IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 77
Query: 92  GFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQRAR--RKLGEHCGYASSFTGRFSSKL 149
           G   ++NHG+ + L+    +  + FF L + EK++    +  G+  GY S      S +L
Sbjct: 78  GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 150 PWKETL-SFRYSAEK---SLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIME 205
            W++      Y  EK   S+      DY+  T             +Y + +  L+  + +
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEAT------------SEYAKCLRLLATKVFK 185
Query: 206 LLAISLGVDRAHFKE---FFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQ 262
            L++ LG++    ++     EE    M++NYYP C +PEL LG   H D ++LT +  + 
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 245
Query: 263 VGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFL 322
           V GLQ+F E +W +     ++ V++IGDT   LSNG+YKS LHR +VN +  R S A F 
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 305
Query: 323 CPKNDKVVSPPSELVDTYSSPRIYPDFTWPMLLE 356
            P  DK+V  P   + +  SP  +P  T+   +E
Sbjct: 306 EPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-148
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-121
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-116
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-81
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 3e-80
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-73
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  422 bits (1086), Expect = e-148
 Identities = 100/346 (28%), Positives = 159/346 (45%), Gaps = 25/346 (7%)

Query: 38  TQIPKQFIWPDDEKPCVN--------APELQVPLIDLGGFLSDDPVAAKEASRLVGEACR 89
             IPK++I P +E   +N            QVP IDL    SDD    +     + +A  
Sbjct: 16  ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASL 75

Query: 90  KHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQR--ARRKLGEHCGYASSFTGRFSS 147
             G   ++NHG+ + L+    +  + FF L + EK++    +  G+  GY S      S 
Sbjct: 76  DWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASG 135

Query: 148 KLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELL 207
           +L W++        E        E   L+        +     +Y + +  L+  + + L
Sbjct: 136 QLEWEDYFFHLAYPE--------EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL 187

Query: 208 AISLGVDRAHFKEFF---EENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVG 264
           ++ LG++    ++     EE    M++NYYP C +PEL LG   H D ++LT +  + V 
Sbjct: 188 SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVP 247

Query: 265 GLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCP 324
           GLQ+F E +W +     ++ V++IGDT   LSNG+YKS LHR +VN +  R S A F  P
Sbjct: 248 GLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 307

Query: 325 KNDKVV-SPPSELVDTYSSPRIYPDFTWPMLLE--FTQKHYRADMK 367
             DK+V  P  E+V    SP  +P  T+   +E     K     + 
Sbjct: 308 PKDKIVLKPLPEMVSV-ESPAKFPPRTFAQHIEHKLFGKEQEELVS 352
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.25
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.86
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 87.49
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 86.95
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 85.27
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=2.9e-84  Score=635.25  Aligned_cols=331  Identities=29%  Similarity=0.481  Sum_probs=297.8

Q ss_pred             chhHhhhccCCCCCCCCCCCCCCCCCCCC----C----CCCcceeeCCCCCCCCHHHHHHHHHHHHHHhhhcceEEEecc
Q 016776           28 VFDASVLKHQTQIPKQFIWPDDEKPCVNA----P----ELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNH   99 (383)
Q Consensus        28 ~v~~~~~~~~~~vP~~yi~p~~~~~~~~~----~----~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFF~l~nH   99 (383)
                      .||+|+++|+++||++||+|+++++....    .    ..+||||||+.|.++++..|++++++|.+||++||||||+||
T Consensus         6 ~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nH   85 (356)
T 1gp6_A            6 RVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINH   85 (356)
T ss_dssp             CHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             cHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCC
Confidence            48999999999999999999888875322    1    236999999999877887889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCHHHHHHhhccCC--CccccCCCCCCcccCCCCceeceecccccccccCchhhhhhhccc
Q 016776          100 GVDSSLIADAHRYMDHFFELPLNEKQRARRKLG--EHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNT  177 (383)
Q Consensus       100 Gi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~--~~~GY~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~~~~wP~~~  177 (383)
                      ||+.++++++++.+++||+||.|+|+++.....  .++||+........+..||+|+|.++..|...   ...+.||..+
T Consensus        86 Gi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~---~~~~~wP~~~  162 (356)
T 1gp6_A           86 GIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEK---RDLSIWPKTP  162 (356)
T ss_dssp             SCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGG---CCGGGSCCSS
T ss_pred             CCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccc---cccccCCCcc
Confidence            999999999999999999999999999987543  57899877655556788999999988665432   2356788754


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhhc---CccceeEEeecCCCCCCCCccccccccCCCc
Q 016776          178 MGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFE---ENDSIMRLNYYPPCQKPELTLGTGPHCDPTS  254 (383)
Q Consensus       178 ~~~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~  254 (383)
                           +.||+++++|+++|.+|+..||++|+++|||++++|.+.+.   ...+.||+||||||++++.++|+++|||+|+
T Consensus       163 -----~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~  237 (356)
T 1gp6_A          163 -----SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSA  237 (356)
T ss_dssp             -----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSS
T ss_pred             -----hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCe
Confidence                 67999999999999999999999999999999999999987   4778999999999999999999999999999


Q ss_pred             eeEEecCCCCCeEEEeCCeEEEecCCCCceEEeeccccccccCCeecCcccccccCCCCCeeeeccccCCCCCc-eEeCC
Q 016776          255 LTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPKNDK-VVSPP  333 (383)
Q Consensus       255 lTlL~qd~~~GLqV~~~g~W~~V~p~pgalvVnvGD~L~~lSnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~-~i~P~  333 (383)
                      ||||+||+++||||+++|+|++|+|+||++||||||+||+||||+|||++|||++++.++|||++||++|+.|+ +|.|+
T Consensus       238 lTlL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl  317 (356)
T 1gp6_A          238 LTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPL  317 (356)
T ss_dssp             EEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCC
T ss_pred             EEEEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999889999999999999999 99999


Q ss_pred             ccccCCCCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 016776          334 SELVDTYSSPRIYPDFTWPMLLEFTQKHYRADMK  367 (383)
Q Consensus       334 ~~~~~~~~~p~~y~~~~~~ey~~~~~~~~~~~~~  367 (383)
                      ++++++ ++|++|+++||+||+.........++.
T Consensus       318 ~~~~~~-~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          318 PEMVSV-ESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             GGGCCS-SSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             hhhcCC-CCCccCCCccHHHHHHHHHHhccCcch
Confidence            999999 899999999999999876555544443
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 383
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 7e-73
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 6e-60
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 2e-52
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-50
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  229 bits (583), Expect = 7e-73
 Identities = 98/333 (29%), Positives = 157/333 (47%), Gaps = 23/333 (6%)

Query: 38  TQIPKQFIWPDDEKPCVNAPEL--------QVPLIDLGGFLSDDPVAAKEASRLVGEACR 89
             IPK++I P +E   +N   L        QVP IDL    SDD    +     + +A  
Sbjct: 15  ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASL 74

Query: 90  KHGFFLVVNHGVDSSLIADAHRYMDHFFELPLNEKQR--ARRKLGEHCGYASSFTGRFSS 147
             G   ++NHG+ + L+    +  + FF L + EK++    +  G+  GY S      S 
Sbjct: 75  DWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASG 134

Query: 148 KLPWKETLSFRYSAEKSLSNNIVEDYLLNTMGDEFKQFGRVYQDYCESMSRLSLGIMELL 207
           +L W++        E        E   L+        +     +Y + +  L+  + + L
Sbjct: 135 QLEWEDYFFHLAYPE--------EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL 186

Query: 208 AISLGVDRAHFKEFFEEND---SIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVG 264
           ++ LG++    ++     +     M++NYYP C +PEL LG   H D ++LT +  + V 
Sbjct: 187 SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVP 246

Query: 265 GLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCP 324
           GLQ+F E +W +     ++ V++IGDT   LSNG+YKS LHR +VN +  R S A F  P
Sbjct: 247 GLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 306

Query: 325 KNDKVV-SPPSELVDTYSSPRIYPDFTWPMLLE 356
             DK+V  P  E+V    SP  +P  T+   +E
Sbjct: 307 PKDKIVLKPLPEMVSV-ESPAKFPPRTFAQHIE 338
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 87.92
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.4e-80  Score=600.50  Aligned_cols=321  Identities=30%  Similarity=0.513  Sum_probs=286.5

Q ss_pred             chhHhhhccCCCCCCCCCCCCCCCCCCC--------CCCCCcceeeCCCCCCCCHHHHHHHHHHHHHHhhhcceEEEecc
Q 016776           28 VFDASVLKHQTQIPKQFIWPDDEKPCVN--------APELQVPLIDLGGFLSDDPVAAKEASRLVGEACRKHGFFLVVNH   99 (383)
Q Consensus        28 ~v~~~~~~~~~~vP~~yi~p~~~~~~~~--------~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFF~l~nH   99 (383)
                      .||+||++|+++||++||||++++|...        ....+||||||+.|.++|+..|++++++|.+||++||||||+||
T Consensus         5 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nH   84 (349)
T d1gp6a_           5 RVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINH   84 (349)
T ss_dssp             CHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             chHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence            3899999999999999999999998752        24568999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCHHHHHHhhccC--CCccccCCCCCCcccCCCCceeceecccccccccCchhhhhhhccc
Q 016776          100 GVDSSLIADAHRYMDHFFELPLNEKQRARRKL--GEHCGYASSFTGRFSSKLPWKETLSFRYSAEKSLSNNIVEDYLLNT  177 (383)
Q Consensus       100 Gi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~~~~wP~~~  177 (383)
                      ||+.++++++++++++||+||.|+|+++....  +.+.||+........+..+|.+.+.....+...   ...+.||..+
T Consensus        85 GI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~n~wp~~~  161 (349)
T d1gp6a_          85 GIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEK---RDLSIWPKTP  161 (349)
T ss_dssp             SCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGG---CCGGGSCCSS
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccccccc---cccccccccc
Confidence            99999999999999999999999999997632  335566655555556677888876543333322   3356777665


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhhc---CccceeEEeecCCCCCCCCccccccccCCCc
Q 016776          178 MGDEFKQFGRVYQDYCESMSRLSLGIMELLAISLGVDRAHFKEFFE---ENDSIMRLNYYPPCQKPELTLGTGPHCDPTS  254 (383)
Q Consensus       178 ~~~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~~~~~~~---~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~  254 (383)
                           +.|++.+++|+++|.+|+..|+++++++||+++++|.+.+.   ...+.||++|||+++.++..+|+++|||+|+
T Consensus       162 -----~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~  236 (349)
T d1gp6a_         162 -----SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSA  236 (349)
T ss_dssp             -----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSS
T ss_pred             -----chHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcc
Confidence                 67999999999999999999999999999999999998874   4567899999999999888999999999999


Q ss_pred             eeEEecCCCCCeEEEeCCeEEEecCCCCceEEeeccccccccCCeecCcccccccCCCCCeeeeccccCCCCCceE-eCC
Q 016776          255 LTILHQDQVGGLQVFVENEWRSISPNFEAFVVNIGDTFMALSNGRYKSCLHRAVVNSQTTRKSLAFFLCPKNDKVV-SPP  333 (383)
Q Consensus       255 lTlL~qd~~~GLqV~~~g~W~~V~p~pgalvVnvGD~L~~lSnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i-~P~  333 (383)
                      ||||+||.++||||+++|+|++|+|.+|++|||+||+||+||||+|||++|||+++++++||||+||++|+.|++| +|+
T Consensus       237 lTlL~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl  316 (349)
T d1gp6a_         237 LTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPL  316 (349)
T ss_dssp             EEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCC
T ss_pred             eEEEeccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999765 899


Q ss_pred             ccccCCCCCCCCCCCCCHHHHHHH
Q 016776          334 SELVDTYSSPRIYPDFTWPMLLEF  357 (383)
Q Consensus       334 ~~~~~~~~~p~~y~~~~~~ey~~~  357 (383)
                      ++|+++ ++|++|+++||+||++.
T Consensus       317 ~~~v~~-~~p~~y~~~t~~e~~~~  339 (349)
T d1gp6a_         317 PEMVSV-ESPAKFPPRTFAQHIEH  339 (349)
T ss_dssp             GGGCCS-SSCCSSCCEEHHHHHHH
T ss_pred             HHHcCC-CCCCCCCCccHHHHHHH
Confidence            999999 99999999999999985
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure