Citrus Sinensis ID: 016797

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
MQGNESNKVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTTRYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQNRIAMGPFSSTGRVLVSPSTQPQH
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHEEEEEccccccccccEEEEEEEEccEEEEEHHHHHHHHccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccHHcccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHcccEEEEccccccccccEEccccccccEEccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHcEEEEEEcHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHHEHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccEEEEEEccccccccEEEHcccccccEEEEccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHccccccccccEEEcccccccc
Coil and Loop (DISEMBL)
mqgnesnkvlSGCFLYYYVANRIIVAINWKryhlctypLHIWIVVDYTTVFVFRLLMFVDNglasgmgldlGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGtlwftsardclpeegQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHsiraqqgipvseyGVLLDMIRVPEWAFEAAGQEMRgigqdtaayhpglYLTAAQREAVEALIQELPKfrlkavptdcsecpicleefhvgnevrglpcahnfhIECIDEWLrlnvkcprcrcsvfpnldlsalsnlrtadserssassvvtttryvrtqpssqSYLVRMQgllspvhmgntrlpndtdialqtvenggvlsatqnriamgpfsstgrvlvspstqpqh
Flexible Loop (DISEMBL)
mqgnesnkvlSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSiraqqgipvseYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSalsnlrtadserssassvvtttryvrtqpssqsyLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQNRiamgpfsstgrvlvspstqpqh
Low Complexity Region (SEG)
MQGNESNKVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRvvvlsilslllYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLrtadserssassvvtttryvrtQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQNRIAMGPFSSTGRVLVSPSTQPQH
Disordered region (IsUnstruct)
********VLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSAL*******************************YLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLS***************************
Disordered Region (DISOPRED)
****ESNKVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGL*****************CGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDC*PEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAF***********************************QELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCS*********************************************************************************************************
Disordered Region (DISEMBL)
MQGNESNKVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNL****************TRYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQNRIAMGPFSSTG************
Disordered Region (DISPRO)
***NESNKVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP******************************************************************************N***********************
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGNESNKVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTTRYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQNRIAMGPFSSTGRVLVSPSTQPQH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q8GYT9	358	E3 ubiquitin-protein liga	yes	no	0.882	0.941	0.729	1e-146
Q9FKX5	221	NEP1-interacting protein-	no	no	0.251	0.434	0.350	6e-12
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.214	0.210	0.339	5e-11
Q8GT74	241	NEP1-interacting protein	no	no	0.201	0.319	0.385	4e-10
Q9C1X4	513	Uncharacterized RING fing	yes	no	0.337	0.251	0.303	4e-10
Q67YI6	411	RING-H2 finger protein AT	no	no	0.141	0.131	0.509	5e-10
Q9FHG8	210	Putative RING-H2 finger p	no	no	0.172	0.314	0.442	1e-09
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.219	0.205	0.293	2e-09
Q7T037	757	E3 ubiquitin-protein liga	N/A	no	0.120	0.060	0.5	2e-09
Q641J8	622	E3 ubiquitin-protein liga	N/A	no	0.120	0.073	0.5	2e-09

>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2

 Score =  519 bits (1336), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/347 (72%), Positives = 290/347 (83%), Gaps = 10/347 (2%)

Query: 8   KVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGM 67
           K   G FL     + IIVA+NW RY  C YPLHIWIVVDYTTVF+FR+ MFVDNGLASG+
Sbjct: 9   KWYDGFFLSMLATSVIIVAVNWNRYRACEYPLHIWIVVDYTTVFIFRVFMFVDNGLASGL 68

Query: 68  GLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 127
           GLD G QQR A FCGRVVVLS+LSLLLYPFLWAWT+IGT WFT ++ CLPEEGQKWGFLI
Sbjct: 69  GLDFGSQQRNAMFCGRVVVLSVLSLLLYPFLWAWTVIGTQWFTKSKTCLPEEGQKWGFLI 128

Query: 128 WLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQE 187
           WL+FSYCGLLCIA + +GKWLTRRQ H +RAQQGIP+SE+G+L+DMIRVP+WAFEAAGQE
Sbjct: 129 WLMFSYCGLLCIAFICVGKWLTRRQVHLLRAQQGIPISEFGILVDMIRVPDWAFEAAGQE 188

Query: 188 MRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 247
           MRGI QD A YHPGLYLT AQ EAVEALIQELPKFRLKAVP DC EC ICLEEFH+G+EV
Sbjct: 189 MRGISQDAATYHPGLYLTPAQTEAVEALIQELPKFRLKAVPDDCGECLICLEEFHIGHEV 248

Query: 248 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTT- 306
           RGLPCAHNFH+ECID+WLRLNVKCPRCRCSVFP+LDLSALSNL+++ +E+ S  +  T+ 
Sbjct: 249 RGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPDLDLSALSNLQSSGTEQHSQVNTETSE 308

Query: 307 TRYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGV 353
            RY+R+QP S+SY +R+Q L+ PVH         TD AL+T ENGGV
Sbjct: 309 ARYIRSQPQSESYFLRVQSLIHPVH---------TDTALETAENGGV 346

E3 ubiquitin protein ligase that acts as positive regulator of sugar signaling during early seedling development. Possesses E3 ligase activity in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 180 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 239
           A  +A Q   G  +     H  ++ TA  +      +  +PK R+     +   C +CL+
Sbjct: 122 AMLSAVQSQMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRITDTSPEIVSCSVCLQ 181

Query: 240 EFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 275
           +F VG  VR LP C H FH+ CID+WLR +  CP CR
Sbjct: 182 DFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218

May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 27/109 (24%)

Query: 202 LYLTAAQREAVEALIQELPKFRL-------------KAVPTDC--------------SEC 234
           LY  A Q  A +  I ++PKFR              + + T+C              +EC
Sbjct: 279 LYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSGKARGIMTECGTDSPIERSLSPEDAEC 338

Query: 235 PICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLD 283
            ICL E+  G E+R LPC H+FH  CID+WL +N +CP C+ ++  N +
Sbjct: 339 CICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILKNAN 387

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 199 HPGLYLTAAQREAVEALIQELPKFRLKAVP-TDCSE----CPICLEEFHVGNEVRGLP-C 252
           H  L+ T   +     L++++PK  +     TD SE    C +CL++F +G  VR LP C
Sbjct: 156 HTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHC 215

Query: 253 AHNFHIECIDEWLRLNVKCPRCR 275
            H FH+ CID WL  +  CP CR
Sbjct: 216 HHMFHLPCIDNWLLRHGSCPMCR 238

Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=4 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 221 KFRLKAVPTDC----SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 276
           K +++  P +      EC IC+E F + ++V  LPC H FH  CI  WLR+N  C  CR 
Sbjct: 379 KMKVQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRA 438

Query: 277 SVFPNLDLSALSNLRTADSERSS--ASSVVTTTRYVRTQPSSQSYLVRMQGLLSPVHMGN 334
            V PN      ++  +A+    S  A+   +TT        ++S+    Q  LS  H  +
Sbjct: 439 PVDPNSQQRNNTSTDSANGHNPSNHANPSTSTTNDQGATLRNESFNAASQSNLSSEHGHS 498

Query: 335 TRLPNDTDIALQTVE 349
           +R P D  +  + +E
Sbjct: 499 SRTPMDDFVDEEPLE 513

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 225 KAVPTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSV 278
           K    +C +C +CL EF  G+ VR LP C H FH+ECIDEWLR +  CP CR ++
Sbjct: 147 KTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAI 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana GN=ATL50 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 210 EAVEALIQELPKFRLKA---VPTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWL 265
           E  ++ I  LP    K    +  D S+C +CL EF   +E+R LP C+H FH+ECID WL
Sbjct: 95  EIDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWL 154

Query: 266 RLNVKCPRCR 275
             N  CP CR
Sbjct: 155 LTNSTCPLCR 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 32/116 (27%)

Query: 202 LYLTAAQREAVEALIQELPKFRLK------------------AVPTDC------------ 231
           LY  A Q  A +  I++L KF+ +                   + T+C            
Sbjct: 289 LYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQ 348

Query: 232 --SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLS 285
             +EC ICL  +  G E+R LPC H+FH  C+D+WL +N  CP C+ ++  + +L 
Sbjct: 349 EDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNLD 404

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279
           C +C+ E+  GN++R LPC+H +HI CID WL  N  CP CR +V 
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 748

Acts as a E3 ubiquitin-protein ligase specific for ldb1, mediating ubiquitination and proteasome-dependent degradation of excess ldb1 in a RING-dependent manner. Does not degrade ldb1 bound to lhx1/lim1, nor lim1 itself and thus contributes to the establishment of proper ldb1-lhx1/lim1 stoichiometry and the formation of a ldb1-lhx1/lim1 complex. Interferes with Spemann organizer function and suppresses secondary axis formation induced by ldb1 and lhx1/lim1.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a PE=1 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279
           C +C+ E+  GN++R LPC+H +HI CID WL  N  CP CR +V 
Sbjct: 568 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 613

Acts as a E3 ubiquitin-protein ligase specific for ldb1, mediating ubiquitination and proteasome-dependent degradation of excess ldb1 in a RING-dependent manner. Does not degrade ldb1 bound to lhx1/lim1, nor lim1 itself and thus contributes to the establishment of proper ldb1-lhx1/lim1 stoichiometry and the formation of a ldb1-lhx1/lim1 complex. Interferes with Spemann organizer function and suppresses secondary axis formation induced by ldb1 and lhx1/lim1.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
255540693	381	protein binding protein, putative [Ricin	0.976	0.979	0.792	1e-176
225457054	381	PREDICTED: E3 ubiquitin-protein ligase S	0.973	0.976	0.799	1e-168
357477371	365	RING finger protein [Medicago truncatula	0.856	0.895	0.866	1e-168
356513598	382	PREDICTED: E3 ubiquitin-protein ligase S	0.916	0.916	0.821	1e-168
224119306	391	predicted protein [Populus trichocarpa]	0.960	0.938	0.783	1e-164
356562736	383	PREDICTED: E3 ubiquitin-protein ligase S	0.942	0.939	0.784	1e-159
449440682	377	PREDICTED: E3 ubiquitin-protein ligase S	0.910	0.923	0.769	1e-153
224133512	333	predicted protein [Populus trichocarpa]	0.840	0.963	0.842	1e-153
219886093	374	unknown [Zea mays]	0.895	0.914	0.737	1e-151
242057653	374	hypothetical protein SORBIDRAFT_03g02403	0.895	0.914	0.743	1e-147

>gi|255540693|ref|XP_002511411.1| protein binding protein, putative [Ricinus communis] gi|223550526|gb|EEF52013.1| protein binding protein, putative [Ricinus communis]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 297/375 (79%), Positives = 324/375 (86%), Gaps = 2/375 (0%)

Query: 8   KVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGM 67
           K   G FL     + +IVAINWKRYH CTYPLHIWIVVDYTTVFVFRLLMF+DNGLA+GM
Sbjct: 9   KWYDGFFLSMLATSVVIVAINWKRYHHCTYPLHIWIVVDYTTVFVFRLLMFIDNGLAAGM 68

Query: 68  GLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 127
           GLD GWQQRYARFCGR+ VLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI
Sbjct: 69  GLDFGWQQRYARFCGRIAVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 128

Query: 128 WLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQE 187
           WL+FSYCGLLCIACM MGKWLTRRQAH +RAQQGIP+SEYGVL+DM+RVP+WAFEAAGQE
Sbjct: 129 WLVFSYCGLLCIACMCMGKWLTRRQAHLLRAQQGIPISEYGVLVDMVRVPDWAFEAAGQE 188

Query: 188 MRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 247
           MRG+GQD AAYHPGLYLT  QREAVEALIQELPKFRLK VPTDCSECPICLEEFHVGNEV
Sbjct: 189 MRGMGQDAAAYHPGLYLTPTQREAVEALIQELPKFRLKTVPTDCSECPICLEEFHVGNEV 248

Query: 248 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTT 307
           RGLPCAHNFH+ECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLR AD ER  A+  VTT 
Sbjct: 249 RGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLR-ADPERPPAAD-VTTN 306

Query: 308 RYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQNRIAMGPFS 367
           RYVRTQPSSQSYL+R+QGLL P+   +    +D D+ L+ VE+G  + AT+  + M P S
Sbjct: 307 RYVRTQPSSQSYLLRLQGLLRPIRTEDAGSSSDVDVDLEAVEHGREVVATREAMVMEPVS 366

Query: 368 STGRVLVSPSTQPQH 382
             G +LV  S+ PQH
Sbjct: 367 LVGSMLVGQSSPPQH 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457054|ref|XP_002282957.1| PREDICTED: E3 ubiquitin-protein ligase SIS3 [Vitis vinifera]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 299/374 (79%), Positives = 318/374 (85%), Gaps = 2/374 (0%)

Query: 8   KVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGM 67
           K   G FL     + IIVAINWKRY LCTYPLHIWI+VDYTTVFVFRLLMFVDNGLA+GM
Sbjct: 9   KWYDGFFLSMLATSVIIVAINWKRYDLCTYPLHIWIMVDYTTVFVFRLLMFVDNGLAAGM 68

Query: 68  GLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 127
           GLD GWQQRYARFCGR+VVLSILSLLLYPFLWAWT+IGTLWFT ARDCLPEEGQKWGFLI
Sbjct: 69  GLDFGWQQRYARFCGRIVVLSILSLLLYPFLWAWTVIGTLWFTRARDCLPEEGQKWGFLI 128

Query: 128 WLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQE 187
           WLLFSYCGLLCIACMSMGKW +RRQAH +RAQQGIPVSEYGVL+DMIRVP+WAFEAAGQE
Sbjct: 129 WLLFSYCGLLCIACMSMGKWFSRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQE 188

Query: 188 MRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 247
           MRG+GQD AAYHPGLYLT  QREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV
Sbjct: 189 MRGMGQDAAAYHPGLYLTPTQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 248

Query: 248 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTT 307
           RGLPCAHNFH+ECIDEWLRLNVKCPRCRCSVFPNLDLSAL++ R ADSERSSA SVVT T
Sbjct: 249 RGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALTHFR-ADSERSSA-SVVTAT 306

Query: 308 RYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQNRIAMGPFS 367
           RYVR QP SQ Y++R+QG L PV   N    ND D AL+  ENGG+   T +     P  
Sbjct: 307 RYVRVQPPSQGYMLRLQGFLRPVRTENAGAGNDADNALENAENGGLPVVTDDLTNTEPAP 366

Query: 368 STGRVLVSPSTQPQ 381
               VLV  ST PQ
Sbjct: 367 FDNGVLVHHSTPPQ 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477371|ref|XP_003608971.1| RING finger protein [Medicago truncatula] gi|355510026|gb|AES91168.1| RING finger protein [Medicago truncatula]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/329 (86%), Positives = 301/329 (91%), Gaps = 2/329 (0%)

Query: 23  IIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCG 82
           +IVAINWKRYH CTYPLHIWIVVDYT VFVFRLLMFVDNG A+GMGLD GWQQRYARFCG
Sbjct: 7   VIVAINWKRYHSCTYPLHIWIVVDYTAVFVFRLLMFVDNGFAAGMGLDFGWQQRYARFCG 66

Query: 83  RVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACM 142
           RVVVLSIL LLLYPFLWAWTIIGT+WF+SA+ CLPEEGQKWGFLIWLLFSYCGLLCIACM
Sbjct: 67  RVVVLSILGLLLYPFLWAWTIIGTMWFSSAKSCLPEEGQKWGFLIWLLFSYCGLLCIACM 126

Query: 143 SMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGL 202
           S+GKWLTRRQAH +RAQQGIP+SEYG+L+DMIRVP+WAFEAAGQE RG+GQDTA+YHPGL
Sbjct: 127 SVGKWLTRRQAHLVRAQQGIPLSEYGILVDMIRVPDWAFEAAGQETRGMGQDTASYHPGL 186

Query: 203 YLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECID 262
           YLT AQREAVEALIQELPKFRLKAVPTDCSECPICLEEF VGNEVRGLPCAHNFH+ECID
Sbjct: 187 YLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECID 246

Query: 263 EWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTTRYVRTQPSSQSYLVR 322
           EWLRLNVKCPRCRCSVFPNLDLSALSNLR  DSERSS  SVVTTTRYVR QPSSQSYL+R
Sbjct: 247 EWLRLNVKCPRCRCSVFPNLDLSALSNLR-PDSERSS-DSVVTTTRYVRGQPSSQSYLLR 304

Query: 323 MQGLLSPVHMGNTRLPNDTDIALQTVENG 351
           +QGLL PV         DTD ALQ  ENG
Sbjct: 305 LQGLLRPVRTEIAGPVGDTDNALQNAENG 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513598|ref|XP_003525499.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Glycine max]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/352 (82%), Positives = 307/352 (87%), Gaps = 2/352 (0%)

Query: 8   KVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGM 67
           K   G FL     + +IVAINWKRYH CTYPLHIWIVVDYTTVFVFRLLMFVDNGLA+GM
Sbjct: 9   KWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGM 68

Query: 68  GLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 127
           GLD GWQQRYARFCGRVVV SIL LLLYPFLWAWT+IGTLWF+SA++CLPE G KWGFLI
Sbjct: 69  GLDFGWQQRYARFCGRVVVFSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEVGTKWGFLI 128

Query: 128 WLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQE 187
           WLLFSYCGLLCIACMS+GKWLTRRQAH +RAQQGIPVSEYGVL+DMIRVP+WAFEAAGQE
Sbjct: 129 WLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQE 188

Query: 188 MRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 247
            RG+GQD AAYHPGLYLT AQREAVEALIQELPKFRLKAVPTDCSECPICLEEF+VGNEV
Sbjct: 189 TRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEV 248

Query: 248 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTT 307
           RGLPCAHNFH+ECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLR A+ E SSA SVVTTT
Sbjct: 249 RGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLR-AEPEESSA-SVVTTT 306

Query: 308 RYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQN 359
           RYVR QPSSQSY +R+QGLL PV         D D  L+  ENG V   TQN
Sbjct: 307 RYVRGQPSSQSYRLRLQGLLRPVGAEIAGPVGDIDNVLENAENGSVSIVTQN 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119306|ref|XP_002318038.1| predicted protein [Populus trichocarpa] gi|222858711|gb|EEE96258.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/370 (78%), Positives = 315/370 (85%), Gaps = 3/370 (0%)

Query: 13  CFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLG 72
           C  +  V +RIIVAINW+RYH+CTYPLHIWI+VDYTTVFVFRLLMF+DNGLA+GMGLD G
Sbjct: 25  CSFFNNVTHRIIVAINWRRYHICTYPLHIWIMVDYTTVFVFRLLMFIDNGLAAGMGLDFG 84

Query: 73  WQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFS 132
            QQRYARFCGR+VVLSILSLLLYPFLWAWTI GTLWFT ARDCLPEEGQKWGFLIWLLFS
Sbjct: 85  RQQRYARFCGRIVVLSILSLLLYPFLWAWTITGTLWFTRARDCLPEEGQKWGFLIWLLFS 144

Query: 133 YCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIG 192
           YCGL+ IAC+S+GKW  RRQAH +RAQQGIP+SEYGVL+D+IRVP+WAFEAAGQEMRG+G
Sbjct: 145 YCGLIGIACISVGKWRVRRQAHHLRAQQGIPISEYGVLVDLIRVPDWAFEAAGQEMRGMG 204

Query: 193 QDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPC 252
           QD AAY PGLYLT  QREAVEALIQELPKFRLKAVPTDCSEC ICLEEF+VGNEVRGLPC
Sbjct: 205 QDAAAYQPGLYLTPTQREAVEALIQELPKFRLKAVPTDCSECLICLEEFYVGNEVRGLPC 264

Query: 253 AHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTTRYVRT 312
           AHNFH+ECIDEWLRLNVKCPRCRCSVFPNLDLSA+SNLR ADSERS A+  VTT RYVRT
Sbjct: 265 AHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSAISNLR-ADSERSPAT--VTTNRYVRT 321

Query: 313 QPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQNRIAMGPFSSTGRV 372
            PSS SYL+R+QGLL PV  GN   P D DI ++  ENG    AT  R      SS G  
Sbjct: 322 VPSSHSYLLRLQGLLWPVQSGNAGDPTDADIDVEAAENGSAHMATGERTGTESVSSAGLA 381

Query: 373 LVSPSTQPQH 382
           LV  STQ  H
Sbjct: 382 LVGQSTQTHH 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562736|ref|XP_003549625.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Glycine max]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/362 (78%), Positives = 312/362 (86%), Gaps = 2/362 (0%)

Query: 8   KVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGM 67
           K   G FL+    + +IVAINWKRYH CTYPLHIWIVVDYTTVFVFR+LMFVDNGL++GM
Sbjct: 9   KWYDGFFLFMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRVLMFVDNGLSAGM 68

Query: 68  GLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 127
           GLD GWQQRYARFCGRVVVLSIL LLLYPFLWAWT+IGTLWF+SA++CLPE G+KWGFLI
Sbjct: 69  GLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEVGKKWGFLI 128

Query: 128 WLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQE 187
           WLLFSYCGL CIACMS+GKWLTRRQAH +RAQQGIPVSEYGVL+DMIRVP+WAFEAAGQE
Sbjct: 129 WLLFSYCGLFCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQE 188

Query: 188 MRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 247
            RG+GQD AAYHPGLYLT AQREAVEALI ELPKFRLKAVPTDCSECPICLEEF+VGNEV
Sbjct: 189 TRGMGQDAAAYHPGLYLTPAQREAVEALILELPKFRLKAVPTDCSECPICLEEFYVGNEV 248

Query: 248 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTT 307
           RGLPCAHNFH+ECIDEWLRLNVKCPRCRCSVFPNLDLSALS+LR A+ E+ SA SVVTT 
Sbjct: 249 RGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSSLR-AEPEQFSA-SVVTTA 306

Query: 308 RYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQNRIAMGPFS 367
           RYVR QPSS SY +R+QGLL PV         D D AL+  +NG V   TQN  + G  +
Sbjct: 307 RYVRGQPSSLSYRLRLQGLLCPVRAEIAGPVGDIDNALKNAQNGVVSIVTQNASSSGDQA 366

Query: 368 ST 369
           S+
Sbjct: 367 SS 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440682|ref|XP_004138113.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Cucumis sativus] gi|449518937|ref|XP_004166492.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Cucumis sativus]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/352 (76%), Positives = 297/352 (84%), Gaps = 4/352 (1%)

Query: 8   KVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGM 67
           K   G FL     + +IV+INWKRYH C +PLHIWIVVDYTTVFVFRLLMFVDNGLA+GM
Sbjct: 9   KWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGM 68

Query: 68  GLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 127
           GLD GWQQRYARFCGR+VVLS+L++LLYPFLWAWT IGT+WF  A  CLPE+GQKWGFLI
Sbjct: 69  GLDFGWQQRYARFCGRIVVLSVLAVLLYPFLWAWTAIGTIWFREAHKCLPEQGQKWGFLI 128

Query: 128 WLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQE 187
           WLLFSYC L+CIACMS+GKWLTRRQA   RAQQGIPVSEYGVL+DM+RVP+WAFEAAGQE
Sbjct: 129 WLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMVRVPDWAFEAAGQE 188

Query: 188 MRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 247
            R +GQD AAYHPGLYLT AQREAVEALI+ELPKFRLKAVPTDCSECPICLEEFHVGNEV
Sbjct: 189 TRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEV 248

Query: 248 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTT 307
           RGLPCAHNFH+ CIDEWLRLNVKCPRCRCSVFPNLDLSALSNLR+ D++R SA SV+T  
Sbjct: 249 RGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRS-DTDRPSA-SVLTAN 306

Query: 308 RYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTD--IALQTVENGGVLSAT 357
           RYV +QPSSQSYLVR+QGLL PV         D     AL+  ENG     T
Sbjct: 307 RYVGSQPSSQSYLVRLQGLLRPVRTEENDAHGDLGPASALEAAENGSAHEQT 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133512|ref|XP_002321588.1| predicted protein [Populus trichocarpa] gi|222868584|gb|EEF05715.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/324 (84%), Positives = 292/324 (90%), Gaps = 3/324 (0%)

Query: 8   KVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGM 67
           K   G FL     + IIVAINWKRY LCTYPLHIWI+VDYTTVFVFRLLMF+DNGLA+GM
Sbjct: 9   KWYDGFFLSMLATSAIIVAINWKRYRLCTYPLHIWIMVDYTTVFVFRLLMFIDNGLAAGM 68

Query: 68  GLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 127
           GLD GWQQRYARFCGR+VVLSILSLLLYPFLWAWTIIGTLWFT+ARDCLPEEGQKWGFLI
Sbjct: 69  GLDFGWQQRYARFCGRIVVLSILSLLLYPFLWAWTIIGTLWFTNARDCLPEEGQKWGFLI 128

Query: 128 WLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQE 187
           WLLFSYCGL+ IAC+S+GKW  RRQAH +RAQQGIP+SEYGVL+D+IRVP+WAFEAAGQE
Sbjct: 129 WLLFSYCGLIGIACISVGKWWVRRQAHHLRAQQGIPISEYGVLVDLIRVPDWAFEAAGQE 188

Query: 188 MRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 247
           MRG+GQD AAY PGLYLT  QREAVEALIQELPKFRLKAVPTDCSECPICLEEF+VGNEV
Sbjct: 189 MRGMGQDAAAYQPGLYLTPTQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEV 248

Query: 248 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTT 307
           RGLPCAHNFH+ECIDEWLRLNVKCPRCRCSVFPNLDLSALSNL  ADSERS A+   TT 
Sbjct: 249 RGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNL-LADSERSPATP--TTN 305

Query: 308 RYVRTQPSSQSYLVRMQGLLSPVH 331
           RYVRT P SQ YL+RMQGLL PV 
Sbjct: 306 RYVRTVPFSQIYLLRMQGLLWPVR 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219886093|gb|ACL53421.1| unknown [Zea mays]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/362 (73%), Positives = 300/362 (82%), Gaps = 20/362 (5%)

Query: 8   KVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGM 67
           K   G FL     + IIV+INWKRY LC +PLHIWIVVDYTTVF+FRLLMFVDNGLA+GM
Sbjct: 9   KWYDGFFLSMLATSVIIVSINWKRYRLCAHPLHIWIVVDYTTVFIFRLLMFVDNGLAAGM 68

Query: 68  GLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 127
           GLDLGWQQRYARFCGR++VLS+L  LLYPFLW WT+IGTLWF++AR CLPEEGQKWGFLI
Sbjct: 69  GLDLGWQQRYARFCGRIIVLSVLVPLLYPFLWVWTVIGTLWFSTARGCLPEEGQKWGFLI 128

Query: 128 WLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQE 187
           WLLFSYCGL CIAC+++GKWL RR A   RAQQGIPVSE+GVL+DMIRVP+WAFEA G E
Sbjct: 129 WLLFSYCGLACIACVAIGKWLHRRHALQQRAQQGIPVSEHGVLVDMIRVPDWAFEAVGLE 188

Query: 188 MRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 247
           MR +GQDT AYHPGLYLT AQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV
Sbjct: 189 MR-VGQDT-AYHPGLYLTDAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 246

Query: 248 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTA---DSERSSASSVV 304
           RGLPCAHNFH+ECID+WLRLNVKCPRCRCSVFPNLDLSAL+NLR+    D   +SAS+V 
Sbjct: 247 RGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPNLDLSALNNLRSTSEPDHPSASASNVT 306

Query: 305 T---TTRYVRTQPSSQSYLVRMQG-LLSPVH-----------MGNTRLPNDTDIALQTVE 349
           T    TRYVR+QP+ QSYLVR+QG LL PV            +GN+RL    ++    V+
Sbjct: 307 TATAATRYVRSQPAGQSYLVRLQGLLLRPVRHDSVESDGEPAVGNSRLVGTEELPSILVD 366

Query: 350 NG 351
           +G
Sbjct: 367 DG 368

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242057653|ref|XP_002457972.1| hypothetical protein SORBIDRAFT_03g024030 [Sorghum bicolor] gi|241929947|gb|EES03092.1| hypothetical protein SORBIDRAFT_03g024030 [Sorghum bicolor]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/362 (74%), Positives = 300/362 (82%), Gaps = 20/362 (5%)

Query: 8   KVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGM 67
           K   G FL     + IIV+INWKRY LC +PLHIWIVVDYTTVF+FRLLMF+DNGLA+GM
Sbjct: 9   KWYDGFFLSMLATSVIIVSINWKRYRLCAHPLHIWIVVDYTTVFIFRLLMFLDNGLAAGM 68

Query: 68  GLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 127
           GLDLGWQQRYARFCGR+VVLS+L LLLYPFLW WT+IGTLWF++AR CLPEEGQKWGFLI
Sbjct: 69  GLDLGWQQRYARFCGRIVVLSVLVLLLYPFLWVWTVIGTLWFSTARGCLPEEGQKWGFLI 128

Query: 128 WLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQE 187
           WLLFSYCGL CIAC+++GKWL RR A   RAQQGIPVSEYGVL+DMIRVP+WAFEA G E
Sbjct: 129 WLLFSYCGLACIACVAIGKWLNRRHALQQRAQQGIPVSEYGVLVDMIRVPDWAFEAVGLE 188

Query: 188 MRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 247
           MR +GQDT AYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV
Sbjct: 189 MR-VGQDT-AYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 246

Query: 248 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTA---DSERSSASSVV 304
           RGLPCAHNFH+ECID+WLRLNVKCPRCRCSVFPNLDLSAL+NLR+    D   +SAS V 
Sbjct: 247 RGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPNLDLSALNNLRSTSEPDHPSASASDVT 306

Query: 305 T---TTRYVRTQPSSQSYLVRMQG-LLSPVH-----------MGNTRLPNDTDIALQTVE 349
           T    TRYVR+QP+ QSYLVR+QG LL PV            + N+RL    ++    V+
Sbjct: 307 TATAATRYVRSQPAGQSYLVRLQGLLLRPVRHESVESDGEPAVANSRLVGTEELPSIVVD 366

Query: 350 NG 351
           +G
Sbjct: 367 DG 368

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
TAIR|locus:2097830	358	SIS3 "SUGAR-INSENSITIVE 3" [Ar	0.882	0.941	0.682	1.5e-131
GENEDB_PFALCIPARUM|PF10_0276	274	PF10_0276 "hypothetical protei	0.332	0.463	0.255	1.4e-16
UNIPROTKB|Q8IJC2	274	PF10_0276 "Zinc finger, C3HC4	0.332	0.463	0.255	1.4e-16
WB|WBGene00007226	170	C01G6.4 [Caenorhabditis elegan	0.232	0.523	0.361	7e-12
TAIR|locus:2156867	245	AT5G66070 [Arabidopsis thalian	0.201	0.314	0.384	1.2e-11
TAIR|locus:2825708	197	AT1G20823 [Arabidopsis thalian	0.272	0.527	0.348	1.5e-11
TAIR|locus:2172550	210	AT5G57750 [Arabidopsis thalian	0.222	0.404	0.397	6.9e-11
TAIR|locus:2011686	185	ATL8 [Arabidopsis thaliana (ta	0.198	0.410	0.407	8.9e-11
TAIR|locus:2053863	185	RHA3A "RING-H2 finger A3A" [Ar	0.133	0.275	0.519	1.5e-10
TAIR|locus:2062008	227	AT2G47560 [Arabidopsis thalian	0.201	0.339	0.380	1.8e-10

TAIR|locus:2097830 SIS3 "SUGAR-INSENSITIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
 Identities = 237/347 (68%), Positives = 264/347 (76%)

Query:     8 KVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGM 67
             K   G FL     + IIVA+NW RY  C YPLHIWIVVDYTTVF+FR+ MFVDNGLASG+
Sbjct:     9 KWYDGFFLSMLATSVIIVAVNWNRYRACEYPLHIWIVVDYTTVFIFRVFMFVDNGLASGL 68

Query:    68 GLDLGWQQRYARFCGRXXXXXXXXXXXYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLI 127
             GLD G QQR A FCGR           YPFLWAWT+IGT WFT ++ CLPEEGQKWGFLI
Sbjct:    69 GLDFGSQQRNAMFCGRVVVLSVLSLLLYPFLWAWTVIGTQWFTKSKTCLPEEGQKWGFLI 128

Query:   128 WLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQE 187
             WL+FSYCGLLCIA + +GKWLTRRQ H +RAQQGIP+SE+G+L+DMIRVP+WAFEAAGQE
Sbjct:   129 WLMFSYCGLLCIAFICVGKWLTRRQVHLLRAQQGIPISEFGILVDMIRVPDWAFEAAGQE 188

Query:   188 MRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV 247
             MRGI QD A YHPGLYLT AQ EAVEALIQELPKFRLKAVP DC EC ICLEEFH+G+EV
Sbjct:   189 MRGISQDAATYHPGLYLTPAQTEAVEALIQELPKFRLKAVPDDCGECLICLEEFHIGHEV 248

Query:   248 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLXXXXXXXXXXXXXXXXX 307
             RGLPCAHNFH+ECID+WLRLNVKCPRCRCSVFP+LDLSALSNL                 
Sbjct:   249 RGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPDLDLSALSNLQSSGTEQHSQVNTETSE 308

Query:   308 XXXX-XQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGV 353
                   QP S+SY +R+Q L+ PVH         TD AL+T ENGGV
Sbjct:   309 ARYIRSQPQSESYFLRVQSLIHPVH---------TDTALETAENGGV 346

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0276 PF10_0276 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 138 (53.6 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 36/141 (25%), Positives = 60/141 (42%)

Query:     1 MQGNESNKVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVD 60
             M  N+   +LS C   Y V +   + + W  +  C  P+ +W+VV + ++ ++RL  F  
Sbjct:    14 MSLNDLILILSVC---YSVGD---IFVQWNEFSKCYKPIQLWLVVSFISIVLYRLSHF-- 65

Query:    61 NGLASGMGLDLGWQQRYARFCGRXXXXXXXXXXXYPFLWAWTIIGTLWFTS----ARDCL 116
               LA  +  D      Y R               +PF + W IIGT+W         +CL
Sbjct:    66 --LAQYLSNDNDDFIIYRRNNPPYYISFLVLFILFPFFFIWNIIGTIWIYQIIKYTPNCL 123

Query:   117 PEEGQKWGFLIWLLFSYCGLL 137
             P     W  ++W++  Y  +L
Sbjct:   124 PRNNHPWFIVLWIVLCYIWIL 144

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJC2 PF10_0276 "Zinc finger, C3HC4 type, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 138 (53.6 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 36/141 (25%), Positives = 60/141 (42%)

Query:     1 MQGNESNKVLSGCFLYYYVANRIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVD 60
             M  N+   +LS C   Y V +   + + W  +  C  P+ +W+VV + ++ ++RL  F  
Sbjct:    14 MSLNDLILILSVC---YSVGD---IFVQWNEFSKCYKPIQLWLVVSFISIVLYRLSHF-- 65

Query:    61 NGLASGMGLDLGWQQRYARFCGRXXXXXXXXXXXYPFLWAWTIIGTLWFTS----ARDCL 116
               LA  +  D      Y R               +PF + W IIGT+W         +CL
Sbjct:    66 --LAQYLSNDNDDFIIYRRNNPPYYISFLVLFILFPFFFIWNIIGTIWIYQIIKYTPNCL 123

Query:   117 PEEGQKWGFLIWLLFSYCGLL 137
             P     W  ++W++  Y  +L
Sbjct:   124 PRNNHPWFIVLWIVLCYIWIL 144

GO:0008150 "biological_process" evidence=ND

WB|WBGene00007226 C01G6.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 166 (63.5 bits), Expect = 7.0e-12, P = 7.0e-12
 Identities = 34/94 (36%), Positives = 53/94 (56%)

Query:   197 AYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNF 256
             A   G  L  A++  +  L++++P    +   T  +EC IC+ +F  G  +R LPC H+F
Sbjct:    59 AQEQGKELDEAKKNRIRGLLEQIPADVFRGDMTS-NECAICMIDFEPGERIRFLPCMHSF 117

Query:   257 HIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNL 290
             H EC+DEWL  +  CP C   + P +D + LS+L
Sbjct:   118 HQECVDEWLMKSFTCPSC---LEP-VDSTILSSL 147

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2156867 AT5G66070 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 30/78 (38%), Positives = 43/78 (55%)

Query:   199 HPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLP-CAHNFH 257
             H  ++ TA  +      +  +PK R+     +   C +CL++F VG  VR LP C H FH
Sbjct:   165 HTDIFDTAISKGLTGDSLNRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFH 224

Query:   258 IECIDEWLRLNVKCPRCR 275
             + CID+WLR +  CP CR
Sbjct:   225 LPCIDKWLRRHASCPLCR 242

GO:0005739 "mitochondrion" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2825708 AT1G20823 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 39/112 (34%), Positives = 53/112 (47%)

Query:   170 LLDMIRVPE--WAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAV 227
             +L +I V    W    A       G  T +  P +   AA +   + ++Q LPK      
Sbjct:    44 VLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPPV--AAANKGLKKKVLQSLPKLTFSPE 101

Query:   228 PTDC---SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 275
               +    +EC ICL EF  G+E+R LP C H FH+ CID WL  +  CP CR
Sbjct:   102 SPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCR 153

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2172550 AT5G57750 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 6.9e-11, P = 6.9e-11
 Identities = 37/93 (39%), Positives = 48/93 (51%)

Query:   190 GIGQDTAAYHPGLYLTAAQ---REAVEALIQELPKFRLKAV---PTDCSECPICLEEFHV 243
             GI + + A   G Y T       E  ++ I  LP    K +     D S+C +CL EF  
Sbjct:    73 GITESSTALQ-GRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTA 131

Query:   244 GNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 275
              +E+R LP C+H FH+ECID WL  N  CP CR
Sbjct:   132 EDELRLLPKCSHAFHVECIDTWLLTNSTCPLCR 164

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2011686 ATL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 8.9e-11, P = 8.9e-11
 Identities = 33/81 (40%), Positives = 45/81 (55%)

Query:   199 HPGLYLTAAQREAVEALIQELPKFRLK--AVPTD-CSECPICLEEFHVGNEVRGLP-CAH 254
             HP   + AA +   + +++ LPK      + P +   EC ICL EF  G+E+R LP C H
Sbjct:    67 HPPP-VAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGH 125

Query:   255 NFHIECIDEWLRLNVKCPRCR 275
              FH+ CID WL  +  CP CR
Sbjct:   126 GFHVSCIDTWLGSHSSCPSCR 146

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2053863 RHA3A "RING-H2 finger A3A" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 27/52 (51%), Positives = 34/52 (65%)

Query:   230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFP 280
             D +EC ICL +F  G E+R LP C H+FH+ECID+WL     CP CR  + P
Sbjct:    98 DSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTP 149

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2062008 AT2G47560 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 32/84 (38%), Positives = 47/84 (55%)

Query:   204 LTAAQREAV--EALIQELPKFRLKAV----PTDCSECPICLEEFHVGNEVRGLP-CAHNF 256
             L+A+ R+    +A++ ++P F   +     P +  EC +CL EF   +E R LP C H+F
Sbjct:    72 LSASPRDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSF 131

Query:   257 HIECIDEWLRLNVKCPRCRCSVFP 280
             H++CID W R    CP CR  V P
Sbjct:   132 HVDCIDTWFRSRSTCPLCRAPVQP 155

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYT9	SIS3_ARATH	6, ., 3, ., 2, ., -	0.7291	0.8821	0.9413	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016103001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (381 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	382
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	8e-15
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	4e-12
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-08
smart00184	40	smart00184, RING, Ring finger	5e-08
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	5e-07
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	5e-07
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	3e-06
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	4e-06
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	0.002
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	0.002
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	0.004

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 67.8 bits (166), Expect = 8e-15
 Identities = 27/43 (62%), Positives = 31/43 (72%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275
           ECPICL+EF  G EV  LPC H FH EC+D+WLR +  CP CR
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 60.2 bits (146), Expect = 4e-12
 Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSV 278
           ECPICLEEF     V  LPC H F   CID+WL+     CP CR  +
Sbjct: 1   ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWL-RLNVKCPRCRCSVFP 280
           EC IC+  F   + +R LPC H FH+ C+D+WL   + KCP CR ++ P
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373

Length = 374

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275
           ECPICL+     + V   PC H F  ECI  +L+   KCP CR
Sbjct: 4   ECPICLDLL--RDPVVLTPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 48.3 bits (115), Expect = 5e-08
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRC 274
           CPICLEE+    +   LPC H F   CI +WL   N  CP C
Sbjct: 1   CPICLEEY--LKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRC 274
           CPICLEE    + V  LPC H F  +CI  WL   NV CP C
Sbjct: 1   CPICLEEPK--DPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 38/166 (22%)

Query: 234 CPICLEE-FHVGNEV---------RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLD 283
           C IC++E FH  +E          + LPC H  H+ C+  WL     CP CR  V     
Sbjct: 290 CTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV----- 344

Query: 284 LSALSNLRTADSERSSASSVVTTTRYVRTQPS---SQSYLVRMQGLLSPVHMGNTR---- 336
                     D    + +S       + TQ     +      + G+ +  + G+ +    
Sbjct: 345 --------IFDQSSPTPASPNVRNTQIATQVPNPDNTPTTTAVPGITNSSNQGDPQASTF 396

Query: 337 --LP--NDTDIALQTVENGGVLSATQNRIAMGPFSSTGRVLVSPST 378
             +P  N +  A  T +    LS+      M P   T R+  S ST
Sbjct: 397 NGVPNANSSGFAAHTQD----LSSVIPGWTMLPIPGTRRISQSTST 438

Length = 491

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 233 ECPICLEEFH---VGNEVRG-LP-CAHNFHIECIDEWLRLNVKCPRCR 275
           EC IC+E+ +   + N   G L  C H F IECID W +    CP CR
Sbjct: 176 ECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 10/52 (19%)

Query: 234 CPICLEEFHV--------GNE--VRGLPCAHNFHIECIDEWLRLNVKCPRCR 275
           C IC   F          G++  V    C H FH+ CI  WL+    CP CR
Sbjct: 22  CAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 10/54 (18%)

Query: 233  ECPICLEEFHVGNEVRGLP------CAHNFHIECIDEWLRL--NVKCPRCRCSV 278
            EC IC     + +  R LP      C + FH  C+ +W        CP CR  +
Sbjct: 1471 ECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Length = 1525

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 234 CPICLEEFH-VGNEVRGLPCAHNFHIECIDEWLRLN--VKCPR 273
           CPI  E      N    LPC H +  + +++  +     KCP 
Sbjct: 13  CPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 234 CPICLEEFHVGNE---VRGLPCAHNFHIECIDEWLRLNVKCPRCR 275
           CP C      G+E   V G+ C H FH  CI  WL     CP  R
Sbjct: 34  CPECQFGMTPGDECPVVWGV-CNHAFHDHCIYRWLDTKGVCPLDR 77

Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	99.94
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.64
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.57
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.41
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.1
PHA02929	238	N1R/p28-like protein; Provisional	99.09
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.07
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.05
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.99
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.97
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.93
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.85
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.85
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.78
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.72
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.71
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.67
PF14634	44	zf-RING_5: zinc-RING finger domain	98.65
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.61
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.61
PHA02926	242	zinc finger-like protein; Provisional	98.58
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.55
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.5
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.46
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.4
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.31
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.27
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.24
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.21
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.2
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.19
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.06
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.99
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.95
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	97.94
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.89
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.83
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.83
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.81
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.73
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.69
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.67
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.63
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.61
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.52
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.39
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.39
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.33
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.15
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.12
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.03
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.02
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	97.01
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.93
COG5152	259	Uncharacterized conserved protein, contains RING a	96.69
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.68
KOG2660	331	consensus Locus-specific chromosome binding protei	96.61
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.55
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	96.41
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.35
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.32
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.3
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.13
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.96
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.84
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.82
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.8
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.45
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.34
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.31
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.23
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.98
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	94.89
KOG4739	233	consensus Uncharacterized protein involved in syna	94.76
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	94.75
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.54
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.19
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.15
PHA02862	156	5L protein; Provisional	94.12
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	93.8
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.8
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.77
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	93.65
PHA03096	284	p28-like protein; Provisional	92.79
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	92.61
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	92.59
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	92.5
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	92.32
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.6
KOG4367	699	consensus Predicted Zn-finger protein [Function un	91.57
PF04641	260	Rtf2: Rtf2 RING-finger	91.37
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.26
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	91.13
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.13
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	91.0
KOG1940	276	consensus Zn-finger protein [General function pred	90.81
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	87.84
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	87.49
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	86.59
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	86.45
KOG0298	1394	consensus DEAD box-containing helicase-like transc	86.39
KOG3002	299	consensus Zn finger protein [General function pred	82.97
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	82.02
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	81.36
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	80.84
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	80.8
KOG3053	293	consensus Uncharacterized conserved protein [Funct	80.73
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	80.14

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-28  Score=224.97  Aligned_cols=198  Identities=23%  Similarity=0.434  Sum_probs=165.4

Q ss_pred             HHhhhcccccccCCCc----chhhHHHHHHHHHHHHHHHhhhcccccccCCchhhhhhhhhhhhhHHHHHHhhhhhhhee
Q 016797           23 IIVAINWKRYHLCTYP----LHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFL   98 (382)
Q Consensus        23 ~~~~~~w~~~~~c~~p----~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~l~~~~f~   98 (382)
                      .+++++||+.|..+|.    +++|.++.|+.+.....                           |+++.    +++|.- 
T Consensus        67 Qi~lv~WKkrh~RSy~~~tll~m~~iPlyf~~~~~w~---------------------------rfl~~----WlmF~~-  114 (328)
T KOG1734|consen   67 QIFLVVWKKRHKRSYDVCTLLIMLFIPLYFFLYMQWY---------------------------RFLFC----WLMFCG-  114 (328)
T ss_pred             HHHHHHHHHhcccchhHHHHHHHHHhhhhhhhhHHHH---------------------------HHHHH----HHHHHH-
Confidence            3899999999999998    78888888877654443                           33322    444443 


Q ss_pred             eeeeeeEeEEEeecCCcCCCCCCC----eehhhH---HHHHHHHHHHHHHHHhhhhhccccchhhhhhcCCcccchhhhh
Q 016797           99 WAWTIIGTLWFTSARDCLPEEGQK----WGFLIW---LLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLL  171 (382)
Q Consensus        99 ~~w~i~g~~w~~~~~~~l~~~~~~----w~~ii~---l~~~~~~~i~i~~~~~~~~~~rr~~~~~~~~~~l~~~~~~~~~  171 (382)
                          ++.++|++++++++.+++||    ||++++   +++|++|++.+++..++..+.+.......++.|+.+++||++ 
T Consensus       115 ----~tafi~~ka~rkp~~g~tpRlVYkwFl~lyklSy~~g~vGyl~im~~~~g~n~~F~~~~~~~md~gi~~lfyglY-  189 (328)
T KOG1734|consen  115 ----FTAFITLKALRKPISGDTPRLVYKWFLFLYKLSYLLGVVGYLAIMFAQFGLNFTFFYLKTTYMDFGISFLFYGLY-  189 (328)
T ss_pred             ----HHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeEEeecchhHhhhhHHHHHHHHH-
Confidence                66778899999999999998    776666   667888999999999999999999999999999999999984 


Q ss_pred             hcccchhhHHHhhhhhhhcCCccccccCCCCCCCHHHHHHHHHHHHhcCccccccCCCCccccccccccccCCC------
Q 016797          172 DMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGN------  245 (382)
Q Consensus       172 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~------  245 (382)
                               ++..|||...+++|.++...|.|.+           +.+|+...++     +.|+||-..+....      
T Consensus       190 ---------yGvlgRdfa~icsd~mAs~iGfYs~-----------~glPtkhl~d-----~vCaVCg~~~~~s~~eegvi  244 (328)
T KOG1734|consen  190 ---------YGVLGRDFAEICSDYMASTIGFYSP-----------SGLPTKHLSD-----SVCAVCGQQIDVSVDEEGVI  244 (328)
T ss_pred             ---------HHhhhhHHHHHHHHHHHHHhcccCC-----------CCCCCCCCCc-----chhHhhcchheeecchhhhh
Confidence                     5577999999999999999999986           7888776554     89999999886554      


Q ss_pred             -ceeeeCCCCccChhhHHHH--HhcCCCCcccCccCCCCC
Q 016797          246 -EVRGLPCAHNFHIECIDEW--LRLNVKCPRCRCSVFPNL  282 (382)
Q Consensus       246 -~~~~lpC~H~Fh~~Ci~~w--l~~~~~CP~CR~~i~~~~  282 (382)
                       +..+|.|+|+||+.||+.|  +.++++||.|++++..++
T Consensus       245 enty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r  284 (328)
T KOG1734|consen  245 ENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR  284 (328)
T ss_pred             hhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence             6789999999999999999  568889999999886443

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=8.7e-16  Score=148.37  Aligned_cols=76  Identities=32%  Similarity=0.792  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhcCccccccCCCCc--cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCC-CcccCccCCCCCcc
Q 016797          209 REAVEALIQELPKFRLKAVPTDC--SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVK-CPRCRCSVFPNLDL  284 (382)
Q Consensus       209 ~~~~~~~~~~lp~~~~~~~~~~~--~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~-CP~CR~~i~~~~~~  284 (382)
                      +...++.++++|..++....+++  ..|+||+|+|+.||+.+.|||+|.||..||++||.++.+ ||+||.++......
T Consensus       205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~  283 (348)
T KOG4628|consen  205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS  283 (348)
T ss_pred             hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence            34556677888988887755432  489999999999999999999999999999999987755 99999988766544

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.8e-14  Score=137.41  Aligned_cols=71  Identities=32%  Similarity=0.752  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhcCccccccCCCCcccccccccc-ccCC---------CceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797          209 REAVEALIQELPKFRLKAVPTDCSECPICLEE-FHVG---------NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV  278 (382)
Q Consensus       209 ~~~~~~~~~~lp~~~~~~~~~~~~~C~IC~~~-~~~~---------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i  278 (382)
                      +.+.+.+.+.+|..+.++...++..|.||+++ ++.+         ..|++|||||.+|.+|++.|++++++||+||.++
T Consensus       265 ~r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         265 RRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             HHHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence            44556666778888888888888999999999 4443         2479999999999999999999999999999985


Q ss_pred             C
Q 016797          279 F  279 (382)
Q Consensus       279 ~  279 (382)
                      .
T Consensus       345 i  345 (491)
T COG5243         345 I  345 (491)
T ss_pred             c
Confidence            4

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.41  E-value=6.6e-14  Score=96.58  Aligned_cols=44  Identities=61%  Similarity=1.323  Sum_probs=40.5

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR  275 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR  275 (382)
                      ++|+||++.+..++.++.++|||.||.+|+.+|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            47999999999889999999999999999999999999999997

...

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.10  E-value=6.3e-11  Score=90.75  Aligned_cols=45  Identities=40%  Similarity=0.916  Sum_probs=35.9

Q ss_pred             ccccccccccccCC----------CceeeeCCCCccChhhHHHHHhcCCCCcccC
Q 016797          231 CSECPICLEEFHVG----------NEVRGLPCAHNFHIECIDEWLRLNVKCPRCR  275 (382)
Q Consensus       231 ~~~C~IC~~~~~~~----------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR  275 (382)
                      ++.|+||++.+...          -.+...+|||.||..||.+|++.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            35699999999322          1245567999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.09  E-value=7.3e-11  Score=109.64  Aligned_cols=68  Identities=28%  Similarity=0.567  Sum_probs=50.3

Q ss_pred             HHHHHHhcCccccccC----CCCccccccccccccCCCc-----eeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          212 VEALIQELPKFRLKAV----PTDCSECPICLEEFHVGNE-----VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       212 ~~~~~~~lp~~~~~~~----~~~~~~C~IC~~~~~~~~~-----~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      .++.++.+|....+..    ...+.+|+||++.+..++.     ...++|+|.||..||.+|++.+.+||+||..+.
T Consensus       151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            4556677776653321    1345799999999764321     245579999999999999999999999998764

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=7.2e-11  Score=110.45  Aligned_cols=50  Identities=44%  Similarity=1.097  Sum_probs=45.8

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP  280 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~  280 (382)
                      .-+|+||++++..++..+.|||.|.||..|+++|+. .+..||+||.++++
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            358999999999999999999999999999999987 67789999998875

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=8.1e-11  Score=109.97  Aligned_cols=54  Identities=33%  Similarity=0.773  Sum_probs=47.7

Q ss_pred             CCCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCCc
Q 016797          227 VPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLD  283 (382)
Q Consensus       227 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~  283 (382)
                      ..+....|.+|++..+   ++..+||||.||..||..|...+..||+||.+..+.+.
T Consensus       235 i~~a~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  235 IPEATRKCSLCLENRS---NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCCCCceEEEecCCC---CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence            3445578999999988   99999999999999999999999999999999877653

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.99  E-value=7.1e-10  Score=99.15  Aligned_cols=53  Identities=28%  Similarity=0.620  Sum_probs=43.6

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhc----------------CCCCcccCccCCCCCccc
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL----------------NVKCPRCRCSVFPNLDLS  285 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~----------------~~~CP~CR~~i~~~~~~~  285 (382)
                      ++.+|+||++.++   +++.++|||.||..||.+|+..                ...||+||..+......+
T Consensus        17 ~~~~CpICld~~~---dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP   85 (193)
T PLN03208         17 GDFDCNICLDQVR---DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP   85 (193)
T ss_pred             CccCCccCCCcCC---CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence            3478999999987   8888999999999999999852                246999999987654433

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=6.8e-10  Score=100.98  Aligned_cols=56  Identities=25%  Similarity=0.583  Sum_probs=47.0

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhc---CCCCcccCccCCCCCccccc
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL---NVKCPRCRCSVFPNLDLSAL  287 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR~~i~~~~~~~~~  287 (382)
                      ....+|.||++.-+   +++++.|||.||+.||.+|+..   ++.||+||+.|..+...+-.
T Consensus        45 ~~~FdCNICLd~ak---dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   45 GGFFDCNICLDLAK---DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CCceeeeeeccccC---CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            34568999999988   9999999999999999999974   34599999999877665543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.93  E-value=7.1e-10  Score=78.52  Aligned_cols=46  Identities=43%  Similarity=0.879  Sum_probs=40.5

Q ss_pred             ccccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      +..|.||++...   .+..+||||. ||..|+.+|++.+..||+||+++.
T Consensus         2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            368999999987   8999999999 999999999999999999998874

...

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.85  E-value=1.5e-09  Score=73.93  Aligned_cols=38  Identities=39%  Similarity=1.100  Sum_probs=30.6

Q ss_pred             cccccccccCCCceeeeCCCCccChhhHHHHHhcC----CCCccc
Q 016797          234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----VKCPRC  274 (382)
Q Consensus       234 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~CP~C  274 (382)
                      |+||++.+.   +|+.|+|||.||..||.+|++..    ..||.|
T Consensus         1 CpiC~~~~~---~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFK---DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-S---SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhC---CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999   99999999999999999998753    359987

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.85  E-value=1.6e-09  Score=72.67  Aligned_cols=38  Identities=50%  Similarity=1.184  Sum_probs=33.1

Q ss_pred             cccccccccCCCce-eeeCCCCccChhhHHHHHhcCCCCccc
Q 016797          234 CPICLEEFHVGNEV-RGLPCAHNFHIECIDEWLRLNVKCPRC  274 (382)
Q Consensus       234 C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~~~~CP~C  274 (382)
                      |+||++.+.   ++ +.++|||.||..|+.+|++.+.+||+|
T Consensus         1 C~iC~~~~~---~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELR---DPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-S---SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCccc---CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            899999988   56 688999999999999999998899998

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=5.8e-09  Score=109.09  Aligned_cols=52  Identities=38%  Similarity=0.951  Sum_probs=45.3

Q ss_pred             CCccccccccccccCCCc--eeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          229 TDCSECPICLEEFHVGNE--VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~--~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..++.|+||.|.+..+.+  ++++||+|.||..|++.|+++.++||.||..+..
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            346799999999986544  8999999999999999999999999999985443

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.72  E-value=9.6e-09  Score=69.84  Aligned_cols=44  Identities=55%  Similarity=1.213  Sum_probs=35.7

Q ss_pred             ccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccC
Q 016797          233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSV  278 (382)
Q Consensus       233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i  278 (382)
                      .|+||++.+.  +.....+|||.||..|++.|++. +..||.||..+
T Consensus         1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999984  23444459999999999999987 77799998753

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=6.5e-09  Score=90.85  Aligned_cols=52  Identities=31%  Similarity=0.684  Sum_probs=43.0

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      +....|+|||+.+.. +.++.+.|||+||..||+.-++....||+||++|..+
T Consensus       129 ~~~~~CPiCl~~~se-k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSE-KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             ccccCCCceecchhh-ccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            344689999999872 2346688999999999999999999999999877543

>smart00504 Ubox Modified RING finger domain

Probab=98.67  E-value=1.8e-08  Score=74.54  Aligned_cols=46  Identities=24%  Similarity=0.400  Sum_probs=41.7

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..|+||.+.+.   +++.++|||+|+..||.+|++.+.+||+|+..+..
T Consensus         2 ~~Cpi~~~~~~---~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMK---DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCC---CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            46999999998   78999999999999999999988899999987743

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.65  E-value=1.8e-08  Score=69.37  Aligned_cols=44  Identities=34%  Similarity=0.764  Sum_probs=38.6

Q ss_pred             ccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797          233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC  276 (382)
Q Consensus       233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~  276 (382)
                      .|.||.+.+...+.+..++|||.||..|+.........||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999966667899999999999999998866678999984

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.61  E-value=2.3e-08  Score=67.60  Aligned_cols=38  Identities=53%  Similarity=1.274  Sum_probs=33.6

Q ss_pred             cccccccccCCCcee-eeCCCCccChhhHHHHHh--cCCCCccc
Q 016797          234 CPICLEEFHVGNEVR-GLPCAHNFHIECIDEWLR--LNVKCPRC  274 (382)
Q Consensus       234 C~IC~~~~~~~~~~~-~lpC~H~Fh~~Ci~~wl~--~~~~CP~C  274 (382)
                      |+||++.+.   .+. .++|||.||..|+.+|++  ....||.|
T Consensus         1 C~iC~~~~~---~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFE---DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCS---SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCcccc---CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988   555 889999999999999998  55679988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.61  E-value=2.7e-08  Score=77.29  Aligned_cols=49  Identities=37%  Similarity=0.786  Sum_probs=37.3

Q ss_pred             ccccccccccccC--------CCc-eeee-CCCCccChhhHHHHHhc---CCCCcccCccCC
Q 016797          231 CSECPICLEEFHV--------GNE-VRGL-PCAHNFHIECIDEWLRL---NVKCPRCRCSVF  279 (382)
Q Consensus       231 ~~~C~IC~~~~~~--------~~~-~~~l-pC~H~Fh~~Ci~~wl~~---~~~CP~CR~~i~  279 (382)
                      ++.|.||...|..        |+. +..+ .|+|.||..||.+|+..   +.+||+||+...
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            5789999988852        222 3333 49999999999999985   467999998753

>PHA02926 zinc finger-like protein; Provisional

Probab=98.58  E-value=2.7e-08  Score=90.07  Aligned_cols=50  Identities=34%  Similarity=0.606  Sum_probs=37.2

Q ss_pred             CccccccccccccCC----C--ceeeeCCCCccChhhHHHHHhcC------CCCcccCccCC
Q 016797          230 DCSECPICLEEFHVG----N--EVRGLPCAHNFHIECIDEWLRLN------VKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~----~--~~~~lpC~H~Fh~~Ci~~wl~~~------~~CP~CR~~i~  279 (382)
                      .+.+|+||++.....    +  -....+|+|.||..||+.|.+.+      .+||+||....
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            457899999986421    1  12344699999999999998743      35999998654

>smart00184 RING Ring finger

Probab=98.55  E-value=5.2e-08  Score=63.83  Aligned_cols=38  Identities=53%  Similarity=1.230  Sum_probs=33.7

Q ss_pred             cccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCccc
Q 016797          234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRC  274 (382)
Q Consensus       234 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~C  274 (382)
                      |+||++...   .+..++|||.||..|++.|++ .+..||.|
T Consensus         1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            789999854   889999999999999999998 66679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.50  E-value=7.1e-08  Score=96.00  Aligned_cols=49  Identities=31%  Similarity=0.571  Sum_probs=43.5

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      ....|+||++.+.   .++.++|||.||..||..|+.....||.||..+...
T Consensus        25 ~~l~C~IC~d~~~---~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        25 TSLRCHICKDFFD---VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccCCCcCchhhh---CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            3478999999998   788899999999999999999888899999977643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=7.7e-08  Score=89.14  Aligned_cols=52  Identities=33%  Similarity=0.744  Sum_probs=44.5

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHH-HHhcCCC-CcccCccCCCCCc
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDE-WLRLNVK-CPRCRCSVFPNLD  283 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~-wl~~~~~-CP~CR~~i~~~~~  283 (382)
                      ..+..|+||++...   .+..++|||+||..||-. |-.++.. ||+||+++.+++.
T Consensus       213 ~~d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         213 LADYKCFLCLEEPE---VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccccceeeeecccC---CcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            34578999999988   899999999999999998 8666555 9999999887654

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.4e-06  Score=86.80  Aligned_cols=51  Identities=33%  Similarity=0.961  Sum_probs=39.7

Q ss_pred             CccccccccccccC---CC-----------ceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCC
Q 016797          230 DCSECPICLEEFHV---GN-----------EVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP  280 (382)
Q Consensus       230 ~~~~C~IC~~~~~~---~~-----------~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~  280 (382)
                      ....|+||+.++..   +.           .-..+||.|+||..|+..|+. .+-.||+||+++++
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            34689999988642   11           134569999999999999999 45589999998864

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.31  E-value=4e-07  Score=62.17  Aligned_cols=34  Identities=38%  Similarity=0.856  Sum_probs=21.8

Q ss_pred             cccccccccC-CCceeeeCCCCccChhhHHHHHhcC
Q 016797          234 CPICLEEFHV-GNEVRGLPCAHNFHIECIDEWLRLN  268 (382)
Q Consensus       234 C~IC~~~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~  268 (382)
                      |+||.+ +.. ...++.|+|||+||.+|+.++++..
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence            899999 653 3458999999999999999998843

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.27  E-value=2.4e-07  Score=88.24  Aligned_cols=47  Identities=34%  Similarity=0.753  Sum_probs=43.5

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      ..|-||.+.|.   .+..+||+|.||..||+..|..+..||.|+..+...
T Consensus        24 LRC~IC~eyf~---ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   24 LRCGICFEYFN---IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES   70 (442)
T ss_pred             HHHhHHHHHhc---CceeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence            58999999999   899999999999999999999999999999877543

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.24  E-value=7.5e-07  Score=67.59  Aligned_cols=47  Identities=34%  Similarity=0.658  Sum_probs=34.5

Q ss_pred             ccccccccccCCCce-eeeC-CCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          233 ECPICLEEFHVGNEV-RGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       233 ~C~IC~~~~~~~~~~-~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      .|+-|...+..+++. ...- |.|.||..||.+||..+..||++|++..
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            344444444444443 3333 9999999999999999999999998754

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.21  E-value=5.9e-07  Score=84.00  Aligned_cols=45  Identities=29%  Similarity=0.518  Sum_probs=41.7

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      ..|-||-+.+.   .+..++|||.||..||+..|..+..||+||.+..
T Consensus        26 lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          26 LRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             HHhhhhhheee---cceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence            68999999998   8899999999999999999999999999998643

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.20  E-value=8.7e-07  Score=67.80  Aligned_cols=48  Identities=25%  Similarity=0.373  Sum_probs=39.0

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~  281 (382)
                      ...|+||.+.+.   +|+.+||||.|...||..|++. +.+||.|+..+...
T Consensus         4 ~f~CpIt~~lM~---dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    4 EFLCPITGELMR---DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGB-TTTSSB-S---SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             ccCCcCcCcHhh---CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            368999999999   9999999999999999999998 88899999887654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=7.3e-07  Score=89.65  Aligned_cols=50  Identities=30%  Similarity=0.571  Sum_probs=41.3

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhcC-----CCCcccCccCCCCCc
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-----VKCPRCRCSVFPNLD  283 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-----~~CP~CR~~i~~~~~  283 (382)
                      +..|+||++...   -+..+.|||+||..||-..+...     ..||+||..|.+...
T Consensus       186 ~~~CPICL~~~~---~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl  240 (513)
T KOG2164|consen  186 DMQCPICLEPPS---VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL  240 (513)
T ss_pred             CCcCCcccCCCC---cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence            578999999987   77777899999999999887643     459999998876443

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=2.3e-06  Score=82.80  Aligned_cols=50  Identities=32%  Similarity=0.592  Sum_probs=43.3

Q ss_pred             CccccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFPNL  282 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~~~  282 (382)
                      +..+|.||+.+.+   +...|||.|. .|..|.+..--+++.||+||+++....
T Consensus       289 ~gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll  339 (349)
T KOG4265|consen  289 SGKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELL  339 (349)
T ss_pred             CCCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence            3579999999998   9999999997 999999887667888999999886543

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.99  E-value=4.5e-06  Score=80.14  Aligned_cols=52  Identities=21%  Similarity=0.395  Sum_probs=37.3

Q ss_pred             ccccccccccccCCCce--eeeCCCCccChhhHHHHHh-cCCCCcccCccCCCCC
Q 016797          231 CSECPICLEEFHVGNEV--RGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPNL  282 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~--~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~~  282 (382)
                      +..|++|...-......  ..-+|||.||..|++..+. ....||.|+..+....
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            35899999963322222  2227999999999999664 4557999998776554

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.95  E-value=6.2e-06  Score=58.04  Aligned_cols=42  Identities=29%  Similarity=0.725  Sum_probs=33.8

Q ss_pred             ccccccccccCCCceeeeCCC-----CccChhhHHHHHhc--CCCCcccC
Q 016797          233 ECPICLEEFHVGNEVRGLPCA-----HNFHIECIDEWLRL--NVKCPRCR  275 (382)
Q Consensus       233 ~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~--~~~CP~CR  275 (382)
                      .|.||++ ...++++...||.     |.+|..|+.+|+..  +.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899998 4455677889985     89999999999964  44799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=1.8e-06  Score=65.04  Aligned_cols=48  Identities=33%  Similarity=0.687  Sum_probs=35.5

Q ss_pred             ccccccccccccC---------CCceeeeC-CCCccChhhHHHHHhc---CCCCcccCccC
Q 016797          231 CSECPICLEEFHV---------GNEVRGLP-CAHNFHIECIDEWLRL---NVKCPRCRCSV  278 (382)
Q Consensus       231 ~~~C~IC~~~~~~---------~~~~~~lp-C~H~Fh~~Ci~~wl~~---~~~CP~CR~~i  278 (382)
                      ++.|-||.-.|..         ++-|..+- |.|.||..||.+|+..   +..||+||+..
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            3478888887742         23344444 9999999999999974   34599999864

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=4.2e-06  Score=79.47  Aligned_cols=44  Identities=43%  Similarity=0.868  Sum_probs=38.6

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC  276 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~  276 (382)
                      +...|+||++.+.   .++.+||+|.||..|+..++.....||.||.
T Consensus        12 ~~~~C~iC~~~~~---~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEYFR---EPVLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHHhh---cCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            4578999999999   6699999999999999999885557999993

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=7.2e-06  Score=77.44  Aligned_cols=49  Identities=29%  Similarity=0.554  Sum_probs=41.6

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCCCc
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPNLD  283 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~~~  283 (382)
                      .+|+||+....   .++.|+|+|.||..||+.-... ..+|++||.++.....
T Consensus         8 ~eC~IC~nt~n---~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~   57 (324)
T KOG0824|consen    8 KECLICYNTGN---CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID   57 (324)
T ss_pred             CcceeeeccCC---cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence            68999999887   8899999999999999987664 4569999999876543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=4.5e-06  Score=58.76  Aligned_cols=45  Identities=29%  Similarity=0.565  Sum_probs=36.7

Q ss_pred             cccccccccccCCCceeeeCCCCc-cChhhHHHHHh-cCCCCcccCccCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLR-LNVKCPRCRCSVF  279 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~-~~~~CP~CR~~i~  279 (382)
                      ++|.||++...   +.+.-.|||. .|..|-.+-++ .+..||+||+++.
T Consensus         8 dECTICye~pv---dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPV---DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcc---hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            78999999866   6666779997 99999666555 6788999998774

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.81  E-value=4.6e-05  Score=74.36  Aligned_cols=47  Identities=32%  Similarity=0.803  Sum_probs=39.6

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhc--CCCCcccCccCCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSVFPN  281 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~CR~~i~~~  281 (382)
                      .-|.||-+.-+   +++.-||||..|..|+..|-..  .++||.||..|...
T Consensus       370 eLCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  370 ELCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHHhhccCC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            36999998866   7888899999999999999743  57899999987644

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=1.5e-05  Score=63.52  Aligned_cols=49  Identities=27%  Similarity=0.609  Sum_probs=36.1

Q ss_pred             Ccccccccccccc-------------CCCceeeeC-CCCccChhhHHHHHhcCCCCcccCccC
Q 016797          230 DCSECPICLEEFH-------------VGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSV  278 (382)
Q Consensus       230 ~~~~C~IC~~~~~-------------~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i  278 (382)
                      ..+.|+||..-+-             .++-.+..- |+|.||..||.+|++.+..||+|.++-
T Consensus        45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            3467998875541             112233333 999999999999999999999998654

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.69  E-value=1.1e-05  Score=85.88  Aligned_cols=50  Identities=26%  Similarity=0.783  Sum_probs=37.3

Q ss_pred             CccccccccccccCCCc---eeeeC-CCCccChhhHHHHHhc--CCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVGNE---VRGLP-CAHNFHIECIDEWLRL--NVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~---~~~lp-C~H~Fh~~Ci~~wl~~--~~~CP~CR~~i~  279 (382)
                      .-.+|+||...+..-+.   -+..+ |+|.||..|+-+|++.  +.+||+||..+.
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            34689999988762111   12333 9999999999999984  567999997764

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.67  E-value=9e-06  Score=61.66  Aligned_cols=49  Identities=29%  Similarity=0.648  Sum_probs=22.8

Q ss_pred             cccccccccccc-CCCceee----eCCCCccChhhHHHHHhc----C-------CCCcccCccCC
Q 016797          231 CSECPICLEEFH-VGNEVRG----LPCAHNFHIECIDEWLRL----N-------VKCPRCRCSVF  279 (382)
Q Consensus       231 ~~~C~IC~~~~~-~~~~~~~----lpC~H~Fh~~Ci~~wl~~----~-------~~CP~CR~~i~  279 (382)
                      +.+|.||++... .++.+..    -.|++.||..|+.+|+..    +       .+||.|+.+|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            368999999875 3333322    248999999999999863    1       14999998763

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.63  E-value=1.2e-05  Score=58.93  Aligned_cols=43  Identities=30%  Similarity=0.783  Sum_probs=23.3

Q ss_pred             cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      ..|++|.+.++   +++.+ .|.|+||..|+..-+.  ..||+|+.+..
T Consensus         8 LrCs~C~~~l~---~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw   51 (65)
T PF14835_consen    8 LRCSICFDILK---EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW   51 (65)
T ss_dssp             TS-SSS-S--S---S-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred             cCCcHHHHHhc---CCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence            58999999998   77654 5999999999988554  35999987653

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=9.5e-06  Score=78.17  Aligned_cols=52  Identities=35%  Similarity=0.690  Sum_probs=42.5

Q ss_pred             ccccccccccccCCCceeeeC-CCCccChhhHHHHHh-cCCCCcccCccCCCCCccc
Q 016797          231 CSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLR-LNVKCPRCRCSVFPNLDLS  285 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~~~~~  285 (382)
                      +..|+||++.++   ..+..+ |.|.||..||..-++ .++.||.||..+.....+.
T Consensus        43 ~v~c~icl~llk---~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr   96 (381)
T KOG0311|consen   43 QVICPICLSLLK---KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLR   96 (381)
T ss_pred             hhccHHHHHHHH---hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCC
Confidence            368999999998   666666 999999999988776 4678999999876665554

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=3.7e-05  Score=74.83  Aligned_cols=47  Identities=32%  Similarity=0.858  Sum_probs=35.9

Q ss_pred             cccccccccccCCCceeeeC-CCCccChhhHHHHHhc---CCCCcccCccC
Q 016797          232 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRL---NVKCPRCRCSV  278 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~---~~~CP~CR~~i  278 (382)
                      ..|.||.+.+....+...+. |||+||..|+..|+..   +.+||+||-.+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            58999965555445555555 9999999999999984   35799999433

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=9.8e-05  Score=73.85  Aligned_cols=49  Identities=31%  Similarity=0.685  Sum_probs=43.7

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..+.+|.||...+.   +++.+||||.||..||.+-+.....||.||..+..
T Consensus        82 ~sef~c~vc~~~l~---~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALY---PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcC---CCccccccccccHHHHHHHhccCCCCccccccccc
Confidence            34679999999998   89999999999999999988888889999998874

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.39  E-value=5.8e-05  Score=74.89  Aligned_cols=47  Identities=32%  Similarity=0.890  Sum_probs=37.1

Q ss_pred             ccccccccccccCCC-ceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          231 CSECPICLEEFHVGN-EVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      -..|+||++.+.... ......|.|.||..|+..|..  .+||+||.-..
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~  222 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS  222 (493)
T ss_pred             CCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence            357999999986432 235666999999999999965  58999997554

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=7e-05  Score=78.99  Aligned_cols=48  Identities=25%  Similarity=0.612  Sum_probs=40.6

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPNL  282 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~~  282 (382)
                      ..|++|-...+   +.+...|+|+||..|+..-+. ++..||.|.+.+-++.
T Consensus       644 LkCs~Cn~R~K---d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  644 LKCSVCNTRWK---DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             eeCCCccCchh---hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            48999998887   788888999999999999887 4567999998876553

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.15  E-value=0.00014  Score=68.76  Aligned_cols=49  Identities=29%  Similarity=0.676  Sum_probs=41.6

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhc-----------------------CCCCcccCccCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-----------------------NVKCPRCRCSVF  279 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----------------------~~~CP~CR~~i~  279 (382)
                      ...|.||+--|..++...+++|-|.||..|+.+.|..                       ...||+||..|.
T Consensus       115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            4689999999999888999999999999999988731                       124999999765

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.00022  Score=69.95  Aligned_cols=51  Identities=31%  Similarity=0.722  Sum_probs=37.2

Q ss_pred             CCccccccccccccCCC--c--eee-eCCCCccChhhHHHHH--hc-----CCCCcccCccCC
Q 016797          229 TDCSECPICLEEFHVGN--E--VRG-LPCAHNFHIECIDEWL--RL-----NVKCPRCRCSVF  279 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~--~--~~~-lpC~H~Fh~~Ci~~wl--~~-----~~~CP~CR~~i~  279 (382)
                      ..+..|.||++......  .  -.. .+|.|.||..||+.|-  .+     .+.||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            44679999999976322  0  112 3499999999999997  33     467999997654

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.03  E-value=0.00013  Score=76.48  Aligned_cols=49  Identities=31%  Similarity=0.542  Sum_probs=41.3

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..|++|+..+..+......+|+|.||..|+..|-+..++||+||..+..
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            4688888888766666677899999999999999999999999986543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.00043  Score=68.07  Aligned_cols=48  Identities=35%  Similarity=0.978  Sum_probs=37.2

Q ss_pred             ccccccccccccCC-C-ceeeeCCCCccChhhHHHHHhc--CCCCcccCccC
Q 016797          231 CSECPICLEEFHVG-N-EVRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSV  278 (382)
Q Consensus       231 ~~~C~IC~~~~~~~-~-~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~CR~~i  278 (382)
                      ...|+||++.+... + ....+.|||.|...||++|+.+  ...||.|..+-
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            46899999998643 3 3455669999999999999963  23499998754

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.00013  Score=70.87  Aligned_cols=43  Identities=28%  Similarity=0.550  Sum_probs=32.7

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      ...|.||++...   +...+||||+-|  |..-- +...+||+||..+.
T Consensus       305 p~lcVVcl~e~~---~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  305 PDLCVVCLDEPK---SAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCceEEecCCcc---ceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            468999999988   799999999855  44332 23345999998774

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.0012  Score=63.92  Aligned_cols=72  Identities=24%  Similarity=0.467  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcCcccccc----CC-CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          206 AAQREAVEALIQELPKFRLKA----VP-TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       206 ~~~~~~~~~~~~~lp~~~~~~----~~-~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ......++.++..+|..+...    .. .+++.|+||...-.   ..+..||+|.-|+.||.+-+-..+.|=.|+..+..
T Consensus       392 ~~e~~~V~r~~~~l~~~~~~~~~~~lp~sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  392 NFESHLVNRASSQLPERKEESFNKDLPDSEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             HHHHHHHHHHHhhcchhhHHhhcCCCCCcccccCcceecccc---hhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            344455666777777655422    22 45689999988766   78889999999999999999999999999987753

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.69  E-value=0.00054  Score=61.18  Aligned_cols=44  Identities=20%  Similarity=0.433  Sum_probs=39.2

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV  278 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i  278 (382)
                      ..|.||..+|+   .++.+.|||.||..|.-.-.+....|-+|-...
T Consensus       197 F~C~iCKkdy~---spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYE---SPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhcc---chhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            58999999999   999999999999999888788888999997643

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.68  E-value=0.00082  Score=67.72  Aligned_cols=53  Identities=30%  Similarity=0.641  Sum_probs=44.2

Q ss_pred             CCccccccccccccCCCceee-eCCCCccChhhHHHHHhcCCCCcccCccCCCCCcc
Q 016797          229 TDCSECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDL  284 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~~  284 (382)
                      +.+..|++|...+.   .+.. ..|||.||..|+..|+..+..||.|+..+......
T Consensus        19 ~~~l~C~~C~~vl~---~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~   72 (391)
T KOG0297|consen   19 DENLLCPICMSVLR---DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL   72 (391)
T ss_pred             cccccCcccccccc---CCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence            34578999999998   6666 58999999999999999999999998876554443

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.61  E-value=0.00055  Score=65.81  Aligned_cols=49  Identities=22%  Similarity=0.523  Sum_probs=40.3

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL  282 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~  282 (382)
                      ..|.+|...+.  +......|-|.||.+||...+.....||.|...+-...
T Consensus        16 itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~   64 (331)
T KOG2660|consen   16 ITCRLCGGYLI--DATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH   64 (331)
T ss_pred             eehhhccceee--cchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence            58999999998  23344459999999999999999999999998765443

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.002  Score=60.46  Aligned_cols=49  Identities=29%  Similarity=0.506  Sum_probs=38.4

Q ss_pred             CCCccccccccccccCCCceeee-CCCCccChhhHHHHHh--cCCCCcccCccCC
Q 016797          228 PTDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR--LNVKCPRCRCSVF  279 (382)
Q Consensus       228 ~~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~--~~~~CP~CR~~i~  279 (382)
                      .+.+.+|++|.+...   .|... +|||+||..|+..-..  ...+||.|-+++.
T Consensus       236 ~t~~~~C~~Cg~~Pt---iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPT---IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCC---CCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            345679999999876   56555 4999999999988654  3468999987765

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.00093  Score=63.07  Aligned_cols=43  Identities=26%  Similarity=0.567  Sum_probs=35.7

Q ss_pred             ccccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..-|+||++...   +.+.|+|||. -|..|-+..    ..||+||+.+..
T Consensus       300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~r  343 (350)
T KOG4275|consen  300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----NECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----ccCchHHHHHHH
Confidence            467999999888   9999999995 899997553    379999987643

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.35  E-value=0.002  Score=46.72  Aligned_cols=40  Identities=30%  Similarity=0.703  Sum_probs=27.6

Q ss_pred             ccccccccccccCCCceeee-CCCCccChhhHHHHHhc--CCCCcc
Q 016797          231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL--NVKCPR  273 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~--~~~CP~  273 (382)
                      ...|+|.+..++   +|+.- .|||.|-+..|..+++.  ...||+
T Consensus        11 ~~~CPiT~~~~~---~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFE---DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-S---SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhh---CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            468999999998   66654 69999999999999943  445998

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.0048  Score=56.25  Aligned_cols=52  Identities=31%  Similarity=0.791  Sum_probs=42.0

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhc--------CCCCcccCccCCCCCcc
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--------NVKCPRCRCSVFPNLDL  284 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~CR~~i~~~~~~  284 (382)
                      ..|..|-..+..||. ..|-|-|.||.+|+..|-..        ...||.|..+|+++..+
T Consensus        51 pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl  110 (299)
T KOG3970|consen   51 PNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL  110 (299)
T ss_pred             CCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence            479999999887655 46679999999999999653        23599999999987654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.30  E-value=0.0013  Score=64.43  Aligned_cols=46  Identities=37%  Similarity=0.854  Sum_probs=37.5

Q ss_pred             ccccccccccccCC-CceeeeCCCCccChhhHHHHHhcC--CCCcccCc
Q 016797          231 CSECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLN--VKCPRCRC  276 (382)
Q Consensus       231 ~~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~--~~CP~CR~  276 (382)
                      +..|..|.+.+-.. +..-.|||.|+||..|+...+.++  .+||.||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            35799999988543 456779999999999999999764  46999994

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.0018  Score=61.43  Aligned_cols=45  Identities=24%  Similarity=0.380  Sum_probs=40.3

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      ..|-||...|.   .++...|+|.||..|-..=++....|++|.+...
T Consensus       242 f~c~icr~~f~---~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  242 FKCFICRKYFY---RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             ccccccccccc---cchhhcCCceeehhhhccccccCCcceecccccc
Confidence            46999999999   9999999999999998888888889999987653

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.96  E-value=0.0045  Score=69.00  Aligned_cols=51  Identities=27%  Similarity=0.613  Sum_probs=40.1

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcC----------CCCcccCccCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----------VKCPRCRCSVFP  280 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----------~~CP~CR~~i~~  280 (382)
                      .++.|.||..+--.......|.|+|.||..|.+..|+++          -.||+|+.+|..
T Consensus      3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            357899998876545567889999999999998877642          149999998753

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.84  E-value=0.0037  Score=63.39  Aligned_cols=48  Identities=29%  Similarity=0.640  Sum_probs=39.3

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHh-----cCCCCcccCccCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-----LNVKCPRCRCSVFP  280 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-----~~~~CP~CR~~i~~  280 (382)
                      .+-+|.+|-+.-+   +.....|.|.||..|+..++.     .+.+||.|.-.+.-
T Consensus       535 ~~~~C~lc~d~ae---d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  535 GEVECGLCHDPAE---DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI  587 (791)
T ss_pred             CceeecccCChhh---hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence            3468999999877   788889999999999998875     35679999765543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.82  E-value=0.0076  Score=58.27  Aligned_cols=49  Identities=24%  Similarity=0.569  Sum_probs=39.9

Q ss_pred             cCCCCccccccccccccCCCceeeeCCCCccChhhHHHH--HhcCCCCcccCcc
Q 016797          226 AVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEW--LRLNVKCPRCRCS  277 (382)
Q Consensus       226 ~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~w--l~~~~~CP~CR~~  277 (382)
                      +.++++..|.||-+...   ....+||+|..|.-|--+-  |...+.||+||..
T Consensus        56 dtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          56 DTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             ccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence            33455668999999987   8889999999999997543  6678899999975

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.0071  Score=59.84  Aligned_cols=46  Identities=33%  Similarity=0.812  Sum_probs=36.9

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhc--------CCCCcccCcc
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--------NVKCPRCRCS  277 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~CR~~  277 (382)
                      ..|.||++........+.+||+|+||..|+......        .-.||-|..+
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            689999999765577899999999999999999752        2248776653

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.45  E-value=0.0089  Score=48.52  Aligned_cols=33  Identities=27%  Similarity=0.707  Sum_probs=27.1

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHH
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECID  262 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~  262 (382)
                      +++..|++|...+.. ......||||+||..|++
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            345679999999864 567788999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.34  E-value=0.011  Score=63.39  Aligned_cols=62  Identities=27%  Similarity=0.573  Sum_probs=41.8

Q ss_pred             HHHHHHhcCccccccCCCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797          212 VEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV  278 (382)
Q Consensus       212 ~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i  278 (382)
                      .++..+.+...+..+..-+...|..|--.+.  -..+...|||.||.+|+.   .....||.|+...
T Consensus       821 i~e~r~~l~~lr~sa~i~q~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  821 IEEKRQELETLRTSAQIFQVSKCSACEGTLD--LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             HHHHHHHHHHhhcccceeeeeeecccCCccc--cceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence            3333344444444443334468999988876  245667799999999998   4566799998633

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.31  E-value=0.0085  Score=50.78  Aligned_cols=43  Identities=23%  Similarity=0.472  Sum_probs=33.4

Q ss_pred             cccccccccccCCCceeeeCCC------CccChhhHHHHHhcCCCCccc
Q 016797          232 SECPICLEEFHVGNEVRGLPCA------HNFHIECIDEWLRLNVKCPRC  274 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~------H~Fh~~Ci~~wl~~~~~CP~C  274 (382)
                      -+|+||++.+..++.++.++||      |.||.+|+.+|-+.+..=|.=
T Consensus        27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfn   75 (134)
T PF05883_consen   27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFN   75 (134)
T ss_pred             eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcc
Confidence            5899999999875677888886      899999999995444433433

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.23  E-value=0.016  Score=40.38  Aligned_cols=45  Identities=27%  Similarity=0.625  Sum_probs=22.2

Q ss_pred             cccccccccCC-CceeeeCCCCccChhhHHHHHh-cCCCCcccCccC
Q 016797          234 CPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSV  278 (382)
Q Consensus       234 C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i  278 (382)
                      |++|.+++... ....--+||+..|..|....++ ....||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78899988322 2233334899999999998886 477899999753

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.98  E-value=0.015  Score=55.13  Aligned_cols=42  Identities=36%  Similarity=0.805  Sum_probs=36.1

Q ss_pred             cccccccccccCCCceeeeC-CCCccChhhHHHHH-hcCCCCcccCc
Q 016797          232 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWL-RLNVKCPRCRC  276 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~  276 (382)
                      ..|+.|...+.   .+.++| |+|.||..||..-| .....||.|..
T Consensus       275 LkCplc~~Llr---np~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLR---NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhh---CcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            68999999988   888887 89999999998665 45678999976

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.89  E-value=0.0095  Score=51.70  Aligned_cols=30  Identities=40%  Similarity=0.898  Sum_probs=27.0

Q ss_pred             CCccccccccccccCCCceeeeCCCCccCh
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHI  258 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~  258 (382)
                      .+..+|.||+|++..++.+..|||-.++|+
T Consensus       175 ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  175 DDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            445799999999999999999999988886

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.76  E-value=0.011  Score=54.77  Aligned_cols=44  Identities=23%  Similarity=0.445  Sum_probs=32.1

Q ss_pred             ccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      .|..|...-. ++.-..+.|+|+||..|...-.  ...||+||..+.
T Consensus         5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir   48 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIR   48 (233)
T ss_pred             EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceee
Confidence            4666665544 5667788899999999975432  237999999764

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=94.75  E-value=0.023  Score=39.54  Aligned_cols=40  Identities=38%  Similarity=0.827  Sum_probs=26.8

Q ss_pred             cccccccccCCCceeeeCCC-----CccChhhHHHHHh--cCCCCccc
Q 016797          234 CPICLEEFHVGNEVRGLPCA-----HNFHIECIDEWLR--LNVKCPRC  274 (382)
Q Consensus       234 C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~--~~~~CP~C  274 (382)
                      |-||++.-..++ +...||+     ...|..|+.+|+.  .+.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            679998876444 6677864     3689999999997  45669887

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.54  E-value=0.023  Score=54.80  Aligned_cols=46  Identities=24%  Similarity=0.452  Sum_probs=37.9

Q ss_pred             CCccccccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCcccCcc
Q 016797          229 TDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCS  277 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~  277 (382)
                      .+...|++|+..-.   ++..+. -|-+||..|+-..+..++.||+=..+
T Consensus       298 ~~~~~CpvClk~r~---Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p  344 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQ---NPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP  344 (357)
T ss_pred             CccccChhHHhccC---CCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence            34578999999877   666666 69999999999999999999986543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.19  E-value=0.045  Score=47.64  Aligned_cols=50  Identities=26%  Similarity=0.527  Sum_probs=35.5

Q ss_pred             CCCccccccccccccCCCceeeeCC--CC---ccChhhHHHHHhc--CCCCcccCccCCCC
Q 016797          228 PTDCSECPICLEEFHVGNEVRGLPC--AH---NFHIECIDEWLRL--NVKCPRCRCSVFPN  281 (382)
Q Consensus       228 ~~~~~~C~IC~~~~~~~~~~~~lpC--~H---~Fh~~Ci~~wl~~--~~~CP~CR~~i~~~  281 (382)
                      ...+..|-||.+...  +.  .-||  ..   .-|.+|+++|+..  ...|+.|+.+....
T Consensus         5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            345578999998853  22  2465  44   4699999999975  45699999876433

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.15  E-value=0.03  Score=54.13  Aligned_cols=47  Identities=32%  Similarity=0.711  Sum_probs=38.7

Q ss_pred             cccccccccccCCC---ceeeeCCCCccChhhHHHHHhc-CCCCcccCccC
Q 016797          232 SECPICLEEFHVGN---EVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSV  278 (382)
Q Consensus       232 ~~C~IC~~~~~~~~---~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i  278 (382)
                      ..|-||-++|..++   .|+.|.|||.+|..|+...+.. ...||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            47999999998653   4788889999999999887764 34599999874

>PHA02862 5L protein; Provisional

Probab=94.12  E-value=0.035  Score=47.44  Aligned_cols=46  Identities=22%  Similarity=0.558  Sum_probs=34.1

Q ss_pred             cccccccccccCCCceeeeCCC-----CccChhhHHHHHhc--CCCCcccCccCCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCA-----HNFHIECIDEWLRL--NVKCPRCRCSVFPN  281 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~--~~~CP~CR~~i~~~  281 (382)
                      +.|=||.+.-.+  .  .-||.     ..-|.+|+.+|+..  +..|+.|+.+..-.
T Consensus         3 diCWIC~~~~~e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik   55 (156)
T PHA02862          3 DICWICNDVCDE--R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK   55 (156)
T ss_pred             CEEEEecCcCCC--C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence            579999998542  2  35664     35899999999974  45699999876543

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.80  E-value=0.034  Score=49.05  Aligned_cols=48  Identities=29%  Similarity=0.729  Sum_probs=34.2

Q ss_pred             cccccccccccCCCc----eeeeCCCCccChhhHHHHHhc----CC-------CCcccCccCC
Q 016797          232 SECPICLEEFHVGNE----VRGLPCAHNFHIECIDEWLRL----NV-------KCPRCRCSVF  279 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~----~~~lpC~H~Fh~~Ci~~wl~~----~~-------~CP~CR~~i~  279 (382)
                      ..|.||...--.|..    .-...||..||.-|+..||+.    ++       .||.|..++.
T Consensus       166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia  228 (234)
T KOG3268|consen  166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA  228 (234)
T ss_pred             hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence            468888765443322    334569999999999999974    11       3999987764

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.80  E-value=0.034  Score=39.67  Aligned_cols=45  Identities=22%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      ..|..|...-.   ....+||||..|..|...+  +-+.||+|-.++...
T Consensus         8 ~~~~~~~~~~~---~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    8 QPCVFCGFVGT---KGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD   52 (55)
T ss_pred             eeEEEcccccc---ccccccccceeeccccChh--hccCCCCCCCcccCC
Confidence            35666665544   7788999999999996553  345699999887654

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.77  E-value=0.057  Score=50.09  Aligned_cols=50  Identities=18%  Similarity=0.347  Sum_probs=41.7

Q ss_pred             cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      ..|++|.+.+...-....| ||||+|+..|.++.+.....||+|-.++...
T Consensus       222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR  272 (303)
T ss_pred             eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence            4799999999865555555 5999999999999999999999998777544

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=93.65  E-value=0.058  Score=57.94  Aligned_cols=48  Identities=35%  Similarity=0.841  Sum_probs=35.7

Q ss_pred             CCccccccccccccCCCceeee-CCCCccChhhHHHHHhcCC-------CCcccCc
Q 016797          229 TDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNV-------KCPRCRC  276 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~-------~CP~CR~  276 (382)
                      ....+|.||.+.+.....+-.- .|-|+||..||..|-+...       .||.|+.
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            3457999999999755444322 2889999999999976421       3999984

>PHA03096 p28-like protein; Provisional

Probab=92.79  E-value=0.055  Score=52.10  Aligned_cols=45  Identities=31%  Similarity=0.529  Sum_probs=31.5

Q ss_pred             cccccccccccCCC----ceeeeC-CCCccChhhHHHHHhc---CCCCcccCc
Q 016797          232 SECPICLEEFHVGN----EVRGLP-CAHNFHIECIDEWLRL---NVKCPRCRC  276 (382)
Q Consensus       232 ~~C~IC~~~~~~~~----~~~~lp-C~H~Fh~~Ci~~wl~~---~~~CP~CR~  276 (382)
                      ..|.||++......    .--.|+ |.|.||..|++.|-..   ..+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            57999999876321    123455 9999999999999753   334655553

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=92.61  E-value=0.11  Score=45.28  Aligned_cols=52  Identities=31%  Similarity=0.622  Sum_probs=36.7

Q ss_pred             ccccccccccccCCCceeeeCC------------CC-ccChhhHHHHHhc------------------------------
Q 016797          231 CSECPICLEEFHVGNEVRGLPC------------AH-NFHIECIDEWLRL------------------------------  267 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC------------~H-~Fh~~Ci~~wl~~------------------------------  267 (382)
                      +..|+||++...   +.+.|-|            +. .-|..|+++.-+.                              
T Consensus         2 d~~CpICme~PH---NAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (162)
T PF07800_consen    2 DVTCPICMEHPH---NAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ   78 (162)
T ss_pred             CccCceeccCCC---ceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence            468999999887   6666655            33 2578899987531                              


Q ss_pred             -CCCCcccCccCCCCCccc
Q 016797          268 -NVKCPRCRCSVFPNLDLS  285 (382)
Q Consensus       268 -~~~CP~CR~~i~~~~~~~  285 (382)
                       +-.||+||..|.......
T Consensus        79 ~~L~CPLCRG~V~GWtvve   97 (162)
T PF07800_consen   79 PELACPLCRGEVKGWTVVE   97 (162)
T ss_pred             ccccCccccCceeceEEch
Confidence             114999999987665443

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=92.59  E-value=0.071  Score=36.32  Aligned_cols=41  Identities=29%  Similarity=0.786  Sum_probs=23.8

Q ss_pred             cccccccccCCCceeeeCCCCccChhhHHHHHhcCC--CCccc
Q 016797          234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV--KCPRC  274 (382)
Q Consensus       234 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~C  274 (382)
                      |.+|.+....|.....-.|+=.+|..|++.+++.+.  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            677888777555544445888999999999998655  69987

; PDB: 3NW0_A 2CT0_A.

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=92.50  E-value=0.24  Score=49.13  Aligned_cols=74  Identities=19%  Similarity=0.497  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhcCccccccCCCCccccccccccccC-------------C------CceeeeCCCCccChhhHHHHHhc
Q 016797          207 AQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHV-------------G------NEVRGLPCAHNFHIECIDEWLRL  267 (382)
Q Consensus       207 ~~~~~~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~-------------~------~~~~~lpC~H~Fh~~Ci~~wl~~  267 (382)
                      .=.++-++.++.=|.....+..++.+.|--|+..-..             |      .+....-|.-..|.+|+-+|+..
T Consensus       247 rF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFas  326 (358)
T PF10272_consen  247 RFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFAS  326 (358)
T ss_pred             HHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhh
Confidence            3345666667777777777556666789999876421             0      00111124556789999999853


Q ss_pred             -------------CCCCcccCccCCC
Q 016797          268 -------------NVKCPRCRCSVFP  280 (382)
Q Consensus       268 -------------~~~CP~CR~~i~~  280 (382)
                                   +-.||.||++...
T Consensus       327 rQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  327 RQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             cCCCCChhhhhcCCCCCCCCccccee
Confidence                         2359999998653

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.32  E-value=0.061  Score=49.48  Aligned_cols=40  Identities=33%  Similarity=0.532  Sum_probs=31.7

Q ss_pred             ccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCC
Q 016797          233 ECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       233 ~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      .|-.|.+.-.   .+..+||.|. +|..|-..    ...||+|+....
T Consensus       160 ~Cr~C~~~~~---~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  160 SCRKCGEREA---TVLLLPCRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             cceecCcCCc---eEEeecccceEeccccccc----CccCCCCcChhh
Confidence            3999988766   7899999996 99999654    346999986553

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.60  E-value=0.073  Score=50.97  Aligned_cols=43  Identities=30%  Similarity=0.559  Sum_probs=30.7

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV  278 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i  278 (382)
                      -.|.-|--.+.  ..-+.+||+|+||.+|.+.  ...+.||.|-.+|
T Consensus        91 HfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   91 HFCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             EeecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence            35777755554  2457789999999999754  3356799997654

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=91.57  E-value=0.32  Score=48.65  Aligned_cols=34  Identities=32%  Similarity=0.698  Sum_probs=29.2

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHH
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWL  265 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl  265 (382)
                      +++..|+||...|+   +|..|||+|..|..|...-+
T Consensus         2 eeelkc~vc~~f~~---epiil~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    2 EEELKCPVCGSFYR---EPIILPCSHNLCQACARNIL   35 (699)
T ss_pred             cccccCceehhhcc---CceEeecccHHHHHHHHhhc
Confidence            34578999999999   99999999999999987543

>PF04641 Rtf2: Rtf2 RING-finger

Probab=91.37  E-value=0.24  Score=47.22  Aligned_cols=53  Identities=25%  Similarity=0.387  Sum_probs=39.7

Q ss_pred             CCccccccccccccCCCc-eeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797          229 TDCSECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL  282 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~  282 (382)
                      .....|+|....+..... +...||||+|...++...- ....||+|-.++....
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D  164 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED  164 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence            345689999999853333 4455799999999999973 3567999998876443

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.26  E-value=0.15  Score=49.39  Aligned_cols=52  Identities=25%  Similarity=0.609  Sum_probs=37.6

Q ss_pred             CCccccccccccccCCCc-eeeeCCCCccChhhHHHHHh-cCCCCcccCccCCC
Q 016797          229 TDCSECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP  280 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~  280 (382)
                      .+++.|+.|++.+...++ -.-.|||-..|..|....-+ .+..||-||.....
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            344669999999875443 45567999988888766543 35679999986543

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.13  E-value=0.16  Score=50.36  Aligned_cols=45  Identities=24%  Similarity=0.457  Sum_probs=38.2

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcC---CCCcccCc
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN---VKCPRCRC  276 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~---~~CP~CR~  276 (382)
                      ..|+|=.+.-.++..|..|.|||+.+.+-+.+.-+..   ..||+|-.
T Consensus       335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV  382 (394)
T ss_pred             eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence            4799999988888889999999999999999987643   46999953

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.13  E-value=0.08  Score=56.90  Aligned_cols=47  Identities=28%  Similarity=0.677  Sum_probs=38.1

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhc--CCCCcccCccCCCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSVFPNL  282 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~CR~~i~~~~  282 (382)
                      ..|.+|.+ .   +.+...+|+|.||..|+..-+..  ...||.||..+....
T Consensus       455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            68999999 3   48888999999999999888764  335999998765444

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.00  E-value=0.018  Score=56.52  Aligned_cols=51  Identities=25%  Similarity=0.591  Sum_probs=43.6

Q ss_pred             cccccccccccCC-CceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797          232 SECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL  282 (382)
Q Consensus       232 ~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~  282 (382)
                      ..|+||.+.++.. ++...+-|||..|..|+++|+.....||.|+..+....
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG  248 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence            5899999998754 56677889999999999999999889999999876543

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=90.81  E-value=0.13  Score=49.08  Aligned_cols=45  Identities=31%  Similarity=0.751  Sum_probs=38.2

Q ss_pred             cccccccccccCC-CceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797          232 SECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC  276 (382)
Q Consensus       232 ~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~  276 (382)
                      ..|+||.+.+... ..+..++|||.-|..|.+.....+-+||+|..
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            4599999987654 35678899999999999998877789999987

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.84  E-value=0.24  Score=53.75  Aligned_cols=36  Identities=22%  Similarity=0.510  Sum_probs=28.4

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHH
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWL  265 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl  265 (382)
                      +.++.|.+|...+. ...-.+.||||.||+.|+.+-.
T Consensus       815 ep~d~C~~C~~~ll-~~pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLL-IKPFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhh-cCcceeeeccchHHHHHHHHHH
Confidence            34578999998875 2355778999999999998764

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=87.49  E-value=0.65  Score=33.18  Aligned_cols=39  Identities=26%  Similarity=0.777  Sum_probs=31.8

Q ss_pred             ccccccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCcc
Q 016797          231 CSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPR  273 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~  273 (382)
                      ...|.+|.+.+..++..+.-| ||-.+|++|.+.    ...|-.
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~   44 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN   44 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence            357999999999888888888 999999999644    345655

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=86.59  E-value=0.85  Score=38.63  Aligned_cols=50  Identities=28%  Similarity=0.504  Sum_probs=36.3

Q ss_pred             CccccccccccccCCCceeeeC---CCCccChhhHHHHHh---cCCCCcccCccCCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLP---CAHNFHIECIDEWLR---LNVKCPRCRCSVFPN  281 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~wl~---~~~~CP~CR~~i~~~  281 (382)
                      .-.+|.||.|...  |+-..-|   ||-..|..|....++   .+..||+|+.+....
T Consensus        79 ~lYeCnIC~etS~--ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   79 KLYECNICKETSA--EERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CceeccCcccccc--hhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            3468999999876  2323333   899999999877665   356799999877543

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=86.45  E-value=0.5  Score=45.07  Aligned_cols=47  Identities=23%  Similarity=0.615  Sum_probs=33.2

Q ss_pred             ccccccccccCCCce--eeeCCCCccChhhHHHHHhc-CCCCcccCccCC
Q 016797          233 ECPICLEEFHVGNEV--RGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVF  279 (382)
Q Consensus       233 ~C~IC~~~~~~~~~~--~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~  279 (382)
                      .|++|..+.-..-..  ..-+|+|..|.+|.+..+.. ...||.|-..+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            588998764332222  22379999999999998765 456999976443

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=86.39  E-value=0.2  Score=56.27  Aligned_cols=43  Identities=28%  Similarity=0.665  Sum_probs=36.9

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCc
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC  276 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~  276 (382)
                      ..|.||++.++.  ......|||.+|..|...|+..+..||.|+.
T Consensus      1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence            479999999871  3345569999999999999999999999985

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=82.97  E-value=0.8  Score=44.48  Aligned_cols=42  Identities=26%  Similarity=0.696  Sum_probs=32.6

Q ss_pred             ccccccccccccCCCceeeeCC--CCccChhhHHHHHhcCCCCcccCccCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPC--AHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC--~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      -.+|+||.+.+.   .+ ...|  ||.-|..|-.+   ....||.||.++.
T Consensus        48 lleCPvC~~~l~---~P-i~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   48 LLDCPVCFNPLS---PP-IFQCDNGHLACSSCRTK---VSNKCPTCRLPIG   91 (299)
T ss_pred             hccCchhhccCc---cc-ceecCCCcEehhhhhhh---hcccCCccccccc
Confidence            368999999987   33 3345  89999999753   4567999998876

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.02  E-value=0.75  Score=48.51  Aligned_cols=50  Identities=28%  Similarity=0.677  Sum_probs=39.3

Q ss_pred             CCCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCCc
Q 016797          227 VPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLD  283 (382)
Q Consensus       227 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~  283 (382)
                      ..+..+.|.+|.+..    ..+..+|.   |..|+..|+..+..||.|++.+..+..
T Consensus       475 l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~  524 (543)
T KOG0802|consen  475 LREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF  524 (543)
T ss_pred             hhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence            334457899999987    45566787   899999999999999999987765543

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=81.36  E-value=0.38  Score=51.18  Aligned_cols=45  Identities=33%  Similarity=0.731  Sum_probs=37.0

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhc---CCCCcccCccCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL---NVKCPRCRCSVF  279 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR~~i~  279 (382)
                      .+|+||.+.+.   ++..+.|.|.||..|+..-+..   ...||+|+..+.
T Consensus        22 lEc~ic~~~~~---~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e   69 (684)
T KOG4362|consen   22 LECPICLEHVK---EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE   69 (684)
T ss_pred             ccCCceeEEee---ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence            68999999998   7788899999999998776653   346999996554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=80.84  E-value=0.92  Score=48.50  Aligned_cols=27  Identities=33%  Similarity=0.659  Sum_probs=23.2

Q ss_pred             eeeeCCCCccChhhHHHHHhcCCCCcc
Q 016797          247 VRGLPCAHNFHIECIDEWLRLNVKCPR  273 (382)
Q Consensus       247 ~~~lpC~H~Fh~~Ci~~wl~~~~~CP~  273 (382)
                      .....|+|+.|.+|...|++....||-
T Consensus      1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hhhccccccccHHHHHHHHhcCCcCCC
Confidence            345669999999999999999889983

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.80  E-value=1.2  Score=44.87  Aligned_cols=37  Identities=27%  Similarity=0.688  Sum_probs=27.1

Q ss_pred             cccccccc-ccccCCCceeeeCCCCccChhhHHHHHhc
Q 016797          231 CSECPICL-EEFHVGNEVRGLPCAHNFHIECIDEWLRL  267 (382)
Q Consensus       231 ~~~C~IC~-~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~  267 (382)
                      ..+|.||. +.....+.-....|+|.||.+|.++.++.
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev  183 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV  183 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence            46899999 44443333445669999999999988763

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.73  E-value=0.78  Score=43.05  Aligned_cols=49  Identities=22%  Similarity=0.543  Sum_probs=33.7

Q ss_pred             CccccccccccccCCCce-eeeCC-----CCccChhhHHHHHhcCC--------CCcccCccC
Q 016797          230 DCSECPICLEEFHVGNEV-RGLPC-----AHNFHIECIDEWLRLNV--------KCPRCRCSV  278 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~-~~lpC-----~H~Fh~~Ci~~wl~~~~--------~CP~CR~~i  278 (382)
                      .+..|-||+..-+++... -.-||     .|-.|..|+..|+..+.        +||-|+.+.
T Consensus        19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            345788999875532221 34566     36799999999986422        499999853

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.14  E-value=0.69  Score=32.02  Aligned_cols=34  Identities=21%  Similarity=0.525  Sum_probs=23.4

Q ss_pred             eeeCC-CCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          248 RGLPC-AHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       248 ~~lpC-~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      -...| .|..|..|+...+.....||+|..+++..
T Consensus        14 ~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen   14 GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            34557 58899999999999999999999887643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	382
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		3e-08
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		3e-08
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		2e-07
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		2e-07
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		2e-06
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		1e-05
2ecm_A	55	Solution Structure Of The Ring Domain Of The Ring F		1e-04
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		3e-04
4epo_C	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		6e-04
1chc_A	68	Structure Of The C3hc4 Domain By 1h-Nuclear Magneti		7e-04
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		8e-04

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSV 278
           D  EC +CL E   G E R LP C H FH EC+D WL  +  CP CR +V
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
           +C ICL     G +VR LPC H FH  C+D+WL  N KCP CR  +
Sbjct: 16  KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 207 AQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR 266
           A +E+++AL + L      AV  +   CPIC  E+  G+    LPC H FH  C+  WL+
Sbjct: 17  ASKESIDALPEILVTEDHGAVGQEMC-CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75
Query: 267 LNVKCPRCRCSVFPNL 282
            +  CP CRC   P L
Sbjct: 76  KSGTCPVCRCMFPPPL 91

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
           ECP+C E++ +G  VR LPC H FH  CI  WL  +  CP CR S+
Sbjct: 17  ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 218 ELPKFRLKAVPTDCSE--CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275
           +LP +R         +  C +C+ +F     +R LPC H FH +C+D+WL+ N  CP CR
Sbjct: 8   QLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
Query: 276 CSVFPN 281
               P+
Sbjct: 68  ADSGPS 73

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALS 288
           C +CLE+F   +E+   PC H FH +C+ +WL +   CP C     P L L+ LS
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCN---MPVLQLAQLS 69

>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 232 SECPICLEEFHVGNEV-RGLPCAHNFHIECIDEWLRLNVKCPRC 274
           S CPICLE+ H    V   LPC H  H  C +E L+   +CP C
Sbjct: 6   SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275
           TD  EC IC++    G     LPCAH+F  +CID+W   +  CP CR
Sbjct: 13  TDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICR 55

>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 166 EYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLK 225
           E+  L++ +   +  FEA  Q          A +  L  T  ++E ++A  +E+    + 
Sbjct: 10  EHWALMEELNRSKKDFEAIIQ----------AKNKELEQTKEEKEKMQAQKEEVLSH-MN 58
Query: 226 AVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275
            V  +  +C IC E F    E   L CAH+F   CI+EW++  ++CP CR
Sbjct: 59  DVLENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICR 105

>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic Resonance Spectroscopy; A New Structural Class Of Zinc- Finger Length = 68

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
           CPICLE+    N    LPC H F   CI  W+R N  CP C+  V
Sbjct: 8   CPICLED--PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 197 AYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNF 256
           A +  L  T  ++E ++A  +E+    +  V  +  +C IC E F    E   L CAH+F
Sbjct: 20  AKNKELEQTKEEKEKMQAQKEEVLSH-MNDVLENELQCIICSEYFI---EAVTLNCAHSF 75
Query: 257 HIECIDEWLRLNVKCPRCR 275
              CI+EW++  ++CP CR
Sbjct: 76  CSYCINEWMKRKIECPICR 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	382
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-26
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-25
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-23
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-22
2ect_A	78	Ring finger protein 126; metal binding protein, st	5e-21
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	4e-20
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-18
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-17
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	4e-14
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-12
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-12
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	4e-12
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-11
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-11
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	3e-11
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	7e-10
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	9e-05
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-09
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	4e-09
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	8e-09
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	1e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-08
1z6u_A	150	NP95-like ring finger protein isoform B; structura	4e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	4e-08
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	6e-08
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-07
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	2e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-07
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-07
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	3e-07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	4e-07
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	6e-07
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	9e-07
3nw0_A	238	Non-structural maintenance of chromosomes element	9e-07
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	1e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	2e-05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	2e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	9e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	1e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	2e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	2e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	6e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  100 bits (250), Expect = 1e-26
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 211 AVEALIQELPKFRLKAV--PTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN 268
                  +LP +R       ++ + C +C+ +F     +R LPC H FH +C+D+WL+ N
Sbjct: 1   GSSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN 60

Query: 269 VKCPRCRCSVFPN 281
             CP CR    P+
Sbjct: 61  RTCPICRADSGPS 73

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 97.0 bits (242), Expect = 3e-25
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 211 AVEALIQELPKFRLKA---VPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL 267
           A +  I  LP+  +            CPIC  E+  G+    LPC H FH  C+  WL+ 
Sbjct: 17  ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK 76

Query: 268 NVKCPRCRCSVFPNL 282
           +  CP CRC   P L
Sbjct: 77  SGTCPVCRCMFPPPL 91

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 91.3 bits (227), Expect = 2e-23
 Identities = 24/55 (43%), Positives = 30/55 (54%)

Query: 232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSA 286
            +C ICL     G +VR LPC H FH  C+D+WL  N KCP CR  +   L   +
Sbjct: 15  EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES 69

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 89.4 bits (222), Expect = 1e-22
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALS 288
                C +CLE+F   +E+   PC H FH +C+ +WL +   CP C   V     LS  S
Sbjct: 13  NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSGPS 72

Query: 289 N 289
           +
Sbjct: 73  S 73

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 85.2 bits (211), Expect = 5e-21
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281
              ECP+C E++ +G  VR LPC H FH  CI  WL  +  CP CR S+   
Sbjct: 14  SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 81.9 bits (203), Expect = 4e-20
 Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSV 278
           D  EC +CL E   G E R LP C H FH EC+D WL  +  CP CR +V
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 80.4 bits (199), Expect = 1e-19
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 232 SECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279
           S CPICLE+ H        LPC H  H  C +E L+   +CP C     
Sbjct: 6   SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 77.1 bits (190), Expect = 3e-18
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 227 VPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
           + T    CPICLE+    N    LPC H F   CI  W+R N  CP C+  V
Sbjct: 1   MATVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALS 288
           TD  EC IC++          LPCAH+F  +CID+W   +  CP CR  +    + S  S
Sbjct: 13  TDEEECCICMDGR----ADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPS 68

Query: 289 N 289
           +
Sbjct: 69  S 69

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 66.1 bits (161), Expect = 4e-14
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 228 PTDCSECPICLEEF----HVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
           P+    CPIC++ +      G  +    C H F  +C+ + L+    CP CR  +
Sbjct: 12  PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 228 PTDCSECPICLEEF----HVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281
           P+    CPIC++ +      G  +    C H F  +C+ + L+    CP CR  +   
Sbjct: 7   PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 234 CPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRC 276
           C  C  E    + V     C H+FH  C+  W++ N +CP C+ 
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 59.8 bits (145), Expect = 4e-12
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 233 ECPICLEEF----HVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281
            CPIC++ +      G  +    C H F  +C+ + L+    CP CR  +   
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 216 IQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275
           +    + ++  +      C +C   F   +    + C H+F   CI  +L  +  CP C 
Sbjct: 1   MHRTTRIKITELN-PHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICD 57

Query: 276 CSVFPNLDLSALSNLRT 292
             V     L  + + +T
Sbjct: 58  VQVHKTRPLLNIRSDKT 74

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 279
               C IC       +      C H F   CI      + +CP+C   V 
Sbjct: 14  PYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPNLDLSALSNLR 291
            C IC+E+    +      C+      CI  WL     +CP CR  +        L N R
Sbjct: 24  RCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL----RELVNCR 77

Query: 292 TAD 294
            A+
Sbjct: 78  WAE 80

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
           EC ICL+     + V  LPC H F   C+     L  +C  CR  +
Sbjct: 17  ECAICLQTCV--HPVS-LPCKHVFCYLCVKGASWLGKRCALCRQEI 59

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 56.2 bits (135), Expect = 7e-10
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
           +C IC E F    E   L CAH+F   CI+EW++  ++CP CR  +
Sbjct: 66  QCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 226 AVPTDCSECPICLEEFHVGNEVRG----LPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 281
           A+ +    CPIC++ +    +         C H F  +C+ + L+    CP CR  +   
Sbjct: 2   AMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 41.3 bits (96), Expect = 9e-05
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 228 PTDCSECPICLEEF----HVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
            +    CPIC++ +      G  +    C H F  +C+ + L+    CP CR  +
Sbjct: 69  GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275
            C IC + F   N V    C H F   C  E  R   +C  C 
Sbjct: 17  RCFICRQAFQ--NPVV-TKCRHYFCESCALEHFRATPRCYICD 56

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSVFPN 281
            C IC      G       C    H+ C+ ++ +     +CP C    +P+
Sbjct: 17  ICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCN-DYWPH 64

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 51.8 bits (124), Expect = 8e-09
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR--------LNVKCPRCRCSVFPNLDL 284
            C +CL E+ V        C   F   C+ +++           + CP   C    +L  
Sbjct: 7   GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66

Query: 285 SALSNL 290
           + +  +
Sbjct: 67  NEIECM 72

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPNLDLS---ALS 288
           +C  C E            C HN   +C+D   R  V  CP CR  +  +  +     L 
Sbjct: 54  QCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQ 110

Query: 289 NL 290
            +
Sbjct: 111 TV 112

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 51.8 bits (123), Expect = 1e-08
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 20/64 (31%)

Query: 233 ECPICLEEFHVGNE---------------VRGLPCAHNFHIECIDEWLR-----LNVKCP 272
           +C IC+E+  V +                 R   C+H FH+ C+           +++CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 273 RCRC 276
            C+ 
Sbjct: 87  SCKT 90

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVK-CPRCRCSVFPNLDLS---ALS 288
            C  C E  +   +     C HN   +C+    +  V  CP CR  +  N  +     L 
Sbjct: 80  MCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQ 136

Query: 289 NL 290
            L
Sbjct: 137 TL 138

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 53.6 bits (128), Expect = 4e-08
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVK-CPRCRCSV 278
            C IC E      +V+  PC H     C+  W     + CP CRC +
Sbjct: 334 LCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 48.9 bits (117), Expect = 6e-08
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 233 ECPICLEEFHVGNEV-RGLPCAHNFHIECIDEWLRLN---VKCPRCRCSVFPNLDLSALS 288
           ECPIC+E F       + L C H    +C+++ L  +   V+CP C         +++L+
Sbjct: 17  ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT----RITSLT 72

Query: 289 NLRT 292
            L  
Sbjct: 73  QLTD 76

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 230 DCSECPICLEEFHV-GNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCR 275
           D  ECP+C+E   +         C +     C        N  CP CR
Sbjct: 10  DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 57

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 16/60 (26%)

Query: 232 SECPICLEEFHVGNEV-----RGLPCAHNFHIECIDEWLR-----------LNVKCPRCR 275
             C IC      G EV         C    H  C++EW +              +CP C+
Sbjct: 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCK 368

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPN 281
           +C  C       +  +   C H F   C+   L  +  KC  C+ S+  +
Sbjct: 17  KCEKCHLVLC--SPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 4/47 (8%)

Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 280
           C  C         V    C H F   C+ +   +   CP C    + 
Sbjct: 25  CSRCTNILR--EPVCLGGCEHIFCSNCVSDC--IGTGCPVCYTPAWI 67

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 13/50 (26%), Positives = 14/50 (28%), Gaps = 1/50 (2%)

Query: 228 PTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRC 276
              C EC                  C H FH  CI  WL+    CP    
Sbjct: 48  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 97

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPNLDLSALSNLR 291
           +C IC+E      E   LPC H     C    +   ++ CP CR  V          N  
Sbjct: 17  QCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSL 73

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
           C IC E F+    +    C+HN+   CI ++L    +CP C  +V
Sbjct: 25  CGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 46.8 bits (110), Expect = 6e-07
 Identities = 13/50 (26%), Positives = 14/50 (28%), Gaps = 1/50 (2%)

Query: 228 PTDCSECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRLNVKCPRCRC 276
              C EC                  C H FH  CI  WL+    CP    
Sbjct: 59  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 108

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 44.7 bits (106), Expect = 9e-07
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 6/46 (13%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
            C  C  E       + LPC H     C++      ++CP C+   
Sbjct: 8   RCQQCQAEA---KCPKLLPCLHTLCSGCLE---ASGMQCPICQAPW 47

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 48.6 bits (115), Expect = 9e-07
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 216 IQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--NVKCPR 273
           I E+ ++  +  P     C IC      G       C    H+ C+ ++ +     +CP 
Sbjct: 165 ILEMEQYIRETYPDAVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPH 222

Query: 274 CRCSVFPN 281
           C    +P+
Sbjct: 223 CN-DYWPH 229

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVK-CPRCRCSVFPNLDL 284
               CPICL+     N +    C H F  +CI   LR   K CP CR  +     L
Sbjct: 53  SELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPNLDLSALSNLR 291
           ECPICL       E    PC H F   CI + +R    KCP     +  N         R
Sbjct: 20  ECPICL---MALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKR 76

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN--VKCPRCRCS 277
           CPI  + +     +    C H F  + I  +L+      CP+  CS
Sbjct: 184 CPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACS 227

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 234 CPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVK--CPRCRCSVFPNLDLSALSN 289
           C IC +      +   +P C +++  ECI   L  + +  CP C  +      LS  S+
Sbjct: 18  CLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGPSS 73

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 281
           ECPICL       E    PC H F   CI + +R    KCP     +  N
Sbjct: 20  ECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 12/63 (19%)

Query: 234 CPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVK--CPRCRCSVF------PNLDL 284
           C IC +     + V  +P C +++  ECI   L  + +  CP C  +         N  L
Sbjct: 16  CLICKDIMT--DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFL 72

Query: 285 SAL 287
              
Sbjct: 73  RQA 75

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 7/88 (7%)

Query: 204 LTAAQREAVEALIQELPKFRLKAVPTDCSE---CPICLEEFHVGNEVRGLPCAHNFHIEC 260
           + AA      +L    P F    + T       C  C    +V        C H +   C
Sbjct: 1   MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACR---NVLRRPFQAQCGHRYCSFC 57

Query: 261 IDEWLR-LNVKCPRCRCSVFPNLDLSAL 287
           +   L      C  C         +S L
Sbjct: 58  LASILSSGPQNCAACVHEGIYEEGISIL 85

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP 280
            C IC        +     C H F   CI   L+ +   CP CR   FP
Sbjct: 25  SCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)

Query: 233 ECPICLEEFHVGNEVRGL--PCAHNFHIECIDEWLRLN-VKCPRCR 275
            CP C    +    ++ +   C H     C+D         CP C 
Sbjct: 5   GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECG 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	382
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.5
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.46
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.41
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.4
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.39
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.38
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.29
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.28
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.27
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.26
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.25
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.25
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.23
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.22
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.2
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.2
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.2
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.19
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.19
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.18
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.18
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.17
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.16
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.15
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.12
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.1
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.1
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.09
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.08
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.05
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.02
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.02
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.0
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.96
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.96
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.94
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.94
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.94
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.93
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.92
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.92
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.92
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.91
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.9
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.88
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.86
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.85
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.84
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.83
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.83
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.79
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.79
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.78
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.68
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.68
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.63
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.62
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.59
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.51
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.5
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.31
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.31
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.31
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.28
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.21
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.92
3nw0_A	238	Non-structural maintenance of chromosomes element	97.44
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.06
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.71
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	90.79
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	85.36
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	81.8
1we9_A	64	PHD finger family protein; structural genomics, PH	80.6

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.50  E-value=7.7e-15  Score=116.15  Aligned_cols=71  Identities=35%  Similarity=0.767  Sum_probs=59.7

Q ss_pred             HHHHHHHHhcCccccccCC---CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          210 EAVEALIQELPKFRLKAVP---TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       210 ~~~~~~~~~lp~~~~~~~~---~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ++.++.++.+|...++...   .++..|+||++.+..++.++.+||||.||..||..|++.+.+||+||..+.+
T Consensus        16 ~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           16 PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             CCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            3445667889988776543   3456899999999988889999999999999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=2.8e-14  Score=108.58  Aligned_cols=65  Identities=35%  Similarity=0.913  Sum_probs=54.3

Q ss_pred             HhcCccccccC--CCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          217 QELPKFRLKAV--PTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       217 ~~lp~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      +.+|..+++..  ..++..|+||++.+..++..+.+||+|.||..|+.+|++.+.+||+||+.+.+.
T Consensus         7 ~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            7 GQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             SSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            55666666543  234578999999999888889999999999999999999999999999988654

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.41  E-value=1.2e-13  Score=98.45  Aligned_cols=50  Identities=50%  Similarity=1.096  Sum_probs=45.5

Q ss_pred             CccccccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      ++.+|+||++.+..++.+..++ |||.||..|+.+|++.+.+||+||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4478999999999888899998 9999999999999999999999998763

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.40  E-value=2.9e-13  Score=101.03  Aligned_cols=53  Identities=43%  Similarity=0.966  Sum_probs=47.4

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      ..+..|+||++.+..++.++.++|||.||..|+..|+..+.+||+||..+...
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            34578999999998778899999999999999999999999999999988654

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.39  E-value=2.9e-13  Score=103.52  Aligned_cols=54  Identities=43%  Similarity=0.918  Sum_probs=47.8

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL  282 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~  282 (382)
                      .++..|+||++.+..++....++|||.||..||.+|++.+.+||+||..+....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN   66 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence            345789999999987778888999999999999999999999999999886543

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=3.2e-13  Score=102.23  Aligned_cols=52  Identities=35%  Similarity=0.832  Sum_probs=46.8

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      .+..|+||++.+..++....++|+|.||..||.+|++.+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            3568999999999888888899999999999999999989999999988654

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.29  E-value=1.9e-12  Score=92.08  Aligned_cols=50  Identities=38%  Similarity=0.827  Sum_probs=43.2

Q ss_pred             CccccccccccccCC-CceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      ++..|+||++.+..+ +.+..++|||.||..|+.+|++.+.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            347899999999643 35788899999999999999998899999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.7e-12  Score=100.36  Aligned_cols=49  Identities=31%  Similarity=0.754  Sum_probs=40.3

Q ss_pred             ccccccccccccC-----------CCceeeeC-CCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          231 CSECPICLEEFHV-----------GNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       231 ~~~C~IC~~~~~~-----------~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      ++.|+||++.+..           ++.++.++ |||.||..||.+|++.+.+||+||.++.
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            4678888888753           34466665 9999999999999999999999998875

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.27  E-value=2.2e-12  Score=96.55  Aligned_cols=53  Identities=26%  Similarity=0.721  Sum_probs=44.6

Q ss_pred             CCccccccccccccC----CCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHV----GNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~----~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      +++..|+||++.+..    ++.++.++|||.||..|+.+|++.+.+||+||..+...
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   64 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence            345789999999873    13348899999999999999999999999999988654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.6e-12  Score=95.43  Aligned_cols=51  Identities=25%  Similarity=0.679  Sum_probs=43.1

Q ss_pred             CCccccccccccccCC----CceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          229 TDCSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      .+...|+||++.+...    +.++.++|||.||..|+..|++.+.+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            3457899999999732    22388999999999999999999999999998875

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=5e-12  Score=95.22  Aligned_cols=50  Identities=24%  Similarity=0.584  Sum_probs=43.7

Q ss_pred             CccccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL  282 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~  282 (382)
                      +...|+||++.+.   +++.+ +|||.||..||..|++.+.+||+||..+....
T Consensus        14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           14 PYILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             GGGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             CCCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            3578999999998   67776 89999999999999998899999999886543

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=3.5e-12  Score=95.85  Aligned_cols=49  Identities=31%  Similarity=0.635  Sum_probs=43.9

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      .++..|+||++.+.   +++.++|||.||..|+..|+..+.+||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            34578999999997   78999999999999999999998999999988753

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.23  E-value=1.1e-11  Score=101.57  Aligned_cols=51  Identities=27%  Similarity=0.628  Sum_probs=41.0

Q ss_pred             ccccccccccccCCC---------------ceeeeCCCCccChhhHHHHH-----hcCCCCcccCccCCCC
Q 016797          231 CSECPICLEEFHVGN---------------EVRGLPCAHNFHIECIDEWL-----RLNVKCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl-----~~~~~CP~CR~~i~~~  281 (382)
                      +..|+||++.+..+.               ..+.++|+|.||..||..|+     ..+.+||+||..+...
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            468999999996532               23378899999999999999     4567899999877543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.22  E-value=4.6e-12  Score=92.67  Aligned_cols=51  Identities=25%  Similarity=0.664  Sum_probs=43.5

Q ss_pred             ccccccccccccCC----CceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          231 CSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      +..|+||++.+...    +.+..++|||.||..|+.+|++.+.+||+||..+...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            46899999999732    3348899999999999999999999999999988654

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=5e-12  Score=94.53  Aligned_cols=49  Identities=39%  Similarity=0.820  Sum_probs=43.3

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL  282 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~  282 (382)
                      +...|+||++.+.   . +.++|||.||..|+.+|+..+.+||+||..+....
T Consensus        14 ~~~~C~IC~~~~~---~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           14 DEEECCICMDGRA---D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCSSSCCSCC---S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCeeCCcCcc---C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            3578999999987   4 88999999999999999999999999999886543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.20  E-value=7.8e-12  Score=92.87  Aligned_cols=48  Identities=44%  Similarity=0.956  Sum_probs=42.2

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      .+..|+||++.+.  +..+.++|||.||..|+..|++.+.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            4568999999987  23588999999999999999999999999998875

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.4e-11  Score=92.64  Aligned_cols=50  Identities=36%  Similarity=0.741  Sum_probs=43.1

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHh---cCCCCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LNVKCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~CR~~i~~~  281 (382)
                      .++..|+||++.+.   +++.++|||.||..|+..|++   .+..||+||..+...
T Consensus        18 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            34578999999998   788899999999999999996   456899999988643

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=2.4e-11  Score=94.68  Aligned_cols=53  Identities=30%  Similarity=0.674  Sum_probs=44.6

Q ss_pred             CCccccccccccccCCCc-eeeeCCCCccChhhHHHHHhcC---CCCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLRLN---VKCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~---~~CP~CR~~i~~~  281 (382)
                      .+...|+||++.+..++. ++.++|||.||..|+..|++.+   .+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            345789999999985443 8899999999999999999875   6899999887543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.3e-11  Score=91.33  Aligned_cols=50  Identities=24%  Similarity=0.537  Sum_probs=42.9

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~  281 (382)
                      .+...|+||++.+.   +++.++|||.||..|+..|+. .+.+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            34578999999998   777799999999999999994 567899999988654

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.18  E-value=1.3e-11  Score=100.32  Aligned_cols=50  Identities=28%  Similarity=0.520  Sum_probs=42.2

Q ss_pred             CccccccccccccCCC---------------ceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVGN---------------EVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      +++.|+||++.+...-               ..+.++|+|.||..||.+|+..+.+||+||..+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            4578999999987431               2466889999999999999999999999998753

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-11  Score=95.01  Aligned_cols=47  Identities=26%  Similarity=0.417  Sum_probs=43.0

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      +...|+||++.+.   .++.++|||.||..|+..|+....+||+||..+.
T Consensus        14 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            3468999999998   7888999999999999999998899999999885

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.17  E-value=9.5e-12  Score=105.82  Aligned_cols=47  Identities=40%  Similarity=0.886  Sum_probs=43.2

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      +..|+||++.+.   .++.+||||.||..||..|+..+.+||+||.++..
T Consensus        53 ~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           53 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             cCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            357999999998   88999999999999999999999999999998854

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.16  E-value=1.9e-11  Score=92.55  Aligned_cols=48  Identities=27%  Similarity=0.576  Sum_probs=41.9

Q ss_pred             CccccccccccccCCCceeeeC-CCCccChhhHHHHHhcC--CCCcccCccCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLN--VKCPRCRCSVFP  280 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~i~~  280 (382)
                      ++..|+||++.+.   +++.++ |||.||..||..|++.+  .+||+||..+..
T Consensus        14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           14 DELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             GGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             CCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            3578999999998   888999 99999999999999865  689999987543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.15  E-value=2.7e-11  Score=92.45  Aligned_cols=49  Identities=20%  Similarity=0.534  Sum_probs=43.7

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN  281 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~  281 (382)
                      ++..|+||++.+.   +++.++|||.||..||..|+.. +.+||+||..+...
T Consensus         7 ~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            7 EYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            4578999999998   8899999999999999999987 77899999987643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=4.2e-11  Score=92.26  Aligned_cols=54  Identities=24%  Similarity=0.560  Sum_probs=43.9

Q ss_pred             CCCccccccccccccCCCceeeeCCC-----CccChhhHHHHHhcC--CCCcccCccCCCCC
Q 016797          228 PTDCSECPICLEEFHVGNEVRGLPCA-----HNFHIECIDEWLRLN--VKCPRCRCSVFPNL  282 (382)
Q Consensus       228 ~~~~~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~--~~CP~CR~~i~~~~  282 (382)
                      ..++..|.||++++..++. ..+||+     |.||..||++|+..+  .+||+||..+....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            3455789999999876555 468996     999999999999865  48999999886543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=6.7e-11  Score=86.51  Aligned_cols=43  Identities=35%  Similarity=0.801  Sum_probs=38.0

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHh---cCCCCccc
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LNVKCPRC  274 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~C  274 (382)
                      .++..|+||++.+.   +++.++|||.||..||.+|++   .+.+||+|
T Consensus        18 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34578999999998   788899999999999999998   45689998

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.10  E-value=2.3e-11  Score=92.87  Aligned_cols=49  Identities=33%  Similarity=0.601  Sum_probs=42.8

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhc-------CCCCcccCccCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-------NVKCPRCRCSVFP  280 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-------~~~CP~CR~~i~~  280 (382)
                      .++..|+||++.+.   +++.++|||.||..|+..|+..       ...||+||..+..
T Consensus        10 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            34578999999998   7888999999999999999986       5679999998864

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.09  E-value=7.8e-11  Score=90.88  Aligned_cols=49  Identities=33%  Similarity=0.622  Sum_probs=42.9

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhc------CCCCcccCccCCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL------NVKCPRCRCSVFPN  281 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~CP~CR~~i~~~  281 (382)
                      ++..|+||++.+.   +++.++|||.||..|+..|+..      ...||.||..+...
T Consensus        18 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           18 EEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             TTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             cCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            3578999999998   7788999999999999999987      66899999988643

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=8.1e-11  Score=90.79  Aligned_cols=48  Identities=35%  Similarity=0.774  Sum_probs=42.7

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhc------CCCCcccCccCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL------NVKCPRCRCSVFP  280 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~CP~CR~~i~~  280 (382)
                      +...|+||++.+.   +++.++|||.||..|+..|+..      ...||.||..+..
T Consensus        18 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           18 EEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            3578999999998   7888999999999999999987      7789999998864

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.08  E-value=3.4e-11  Score=96.73  Aligned_cols=46  Identities=30%  Similarity=0.774  Sum_probs=41.8

Q ss_pred             cccccccccccCCCceee-eCCCCccChhhHHHHHhcC-CCCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~  280 (382)
                      ..|+||++.+.   +++. ++|||.||..||..|+..+ .+||+||..+..
T Consensus        23 ~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           23 FRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            68999999998   7888 9999999999999999977 689999998854

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.08  E-value=9.1e-11  Score=92.40  Aligned_cols=48  Identities=27%  Similarity=0.574  Sum_probs=41.9

Q ss_pred             CCccccccccccccCCCceeeeC-CCCccChhhHHHHHhcC--CCCcccCccCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLN--VKCPRCRCSVF  279 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~i~  279 (382)
                      .++..|+||++.+.   +++.++ |||.||..||..|+..+  ..||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            34578999999998   889999 99999999999999743  58999998874

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.05  E-value=1e-10  Score=95.03  Aligned_cols=48  Identities=27%  Similarity=0.616  Sum_probs=43.4

Q ss_pred             ccccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      +..|+||++.+.   +++.+ +|||.||..||..|+..+.+||+||..+...
T Consensus        15 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           15 HLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             cCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            468999999998   78887 9999999999999999989999999988654

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.05  E-value=8.6e-11  Score=97.89  Aligned_cols=47  Identities=30%  Similarity=0.607  Sum_probs=42.0

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC-CCcccCccCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFP  280 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~i~~  280 (382)
                      +..|+||++.+.   .++.++|||.||..||..|+..+. +||+||..+..
T Consensus        52 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            368999999998   889999999999999999998544 89999998865

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.05  E-value=7e-11  Score=94.45  Aligned_cols=46  Identities=33%  Similarity=0.773  Sum_probs=41.9

Q ss_pred             cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..|+||++.+.   +++.+ +|||.||..|+..|+..+.+||+||..+..
T Consensus        23 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           23 LRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            68999999998   67777 899999999999999988999999988764

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.04  E-value=2.6e-11  Score=100.08  Aligned_cols=50  Identities=30%  Similarity=0.563  Sum_probs=1.0

Q ss_pred             CccccccccccccCC-------------Cc--eeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVG-------------NE--VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~-------------~~--~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      +++.|+||++.|...             ++  ...++|+|.||..||.+|++.+.+||+||.++.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            457899999999742             11  233589999999999999999999999998753

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.5e-10  Score=82.95  Aligned_cols=42  Identities=36%  Similarity=0.875  Sum_probs=36.6

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHh---cCCCCccc
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LNVKCPRC  274 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~C  274 (382)
                      +...|+||++.+.   +++.++|||.||..||.+|+.   .+.+||+|
T Consensus        14 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCS---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccC---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4578999999998   778899999999999999954   56789998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.02  E-value=1.5e-10  Score=96.80  Aligned_cols=53  Identities=25%  Similarity=0.628  Sum_probs=44.8

Q ss_pred             CccccccccccccCC----CceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797          230 DCSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL  282 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~  282 (382)
                      ++..|+||++.+...    +.++.++|||.||..||.+|++.+.+||+||..+....
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            457899999999731    23389999999999999999999999999999886543

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.00  E-value=1.9e-10  Score=84.69  Aligned_cols=51  Identities=20%  Similarity=0.470  Sum_probs=40.0

Q ss_pred             ccccccccc-cccCCCc-eeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCC
Q 016797          231 CSECPICLE-EFHVGNE-VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~-~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~  281 (382)
                      +..|+||++ .+..... ...++|||.||..|+.+|+.. ...||+||..+...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            468999999 7763322 246799999999999999764 46799999988654

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.96  E-value=8.5e-11  Score=96.57  Aligned_cols=46  Identities=33%  Similarity=0.684  Sum_probs=41.5

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVF  279 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~  279 (382)
                      +..|+||++.+.   +++.++|||.||..|+..|+.. +.+||.||..+.
T Consensus        15 ~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           15 ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            468999999998   8899999999999999999976 668999998875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.96  E-value=3.6e-10  Score=92.04  Aligned_cols=47  Identities=34%  Similarity=0.703  Sum_probs=41.3

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCC---CCcccCccCCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV---KCPRCRCSVFPN  281 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~i~~~  281 (382)
                      ..|+||++.+.   .++.++|||.||..|+..|+..+.   +||+||..+...
T Consensus        22 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           22 LECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             TSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            58999999998   788899999999999999998654   799999887643

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.94  E-value=3.7e-10  Score=97.38  Aligned_cols=48  Identities=27%  Similarity=0.556  Sum_probs=42.9

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC-CCcccCccCCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~i~~~  281 (382)
                      ...|+||++.+.   +++.++|||.||..||..|+.... .||+||..+...
T Consensus        78 ~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            368999999998   888999999999999999998654 799999988755

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=6.5e-10  Score=84.09  Aligned_cols=49  Identities=22%  Similarity=0.610  Sum_probs=40.9

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcC--CCCcccCccCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN--VKCPRCRCSVFP  280 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~--~~CP~CR~~i~~  280 (382)
                      ...+|+||.+.+..++...  .|+|.||..||.+|++.+  .+||+||.....
T Consensus        14 ~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            3468999999998655443  799999999999999977  789999987653

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.94  E-value=2.6e-10  Score=81.65  Aligned_cols=47  Identities=23%  Similarity=0.546  Sum_probs=39.9

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      .+...|+||++.+.   +++.++|||.||..|+..|   ...||+||..+...
T Consensus         4 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            34578999999998   7899999999999999773   56899999987643

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.93  E-value=4e-10  Score=93.08  Aligned_cols=50  Identities=36%  Similarity=0.644  Sum_probs=43.6

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC-CCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~i~~~  281 (382)
                      .+...|+||++.+.   .++.++|||.||..||..|+.... +||+||..+...
T Consensus        16 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            44579999999998   788899999999999999998665 899999988653

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.92  E-value=4.7e-10  Score=98.05  Aligned_cols=48  Identities=35%  Similarity=0.755  Sum_probs=42.0

Q ss_pred             ccccccccccccCCCceeee-CCCCccChhhHHHHHhc-CCCCcccCccCCCC
Q 016797          231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~  281 (382)
                      ...|+||++.+.   +++.+ +|||.||..||..|+.. +..||+||..+...
T Consensus        54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  103 (165)
T 2ckl_B           54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK  103 (165)
T ss_dssp             HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred             CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence            358999999998   67777 89999999999999997 77899999988543

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.92  E-value=4.7e-10  Score=87.35  Aligned_cols=47  Identities=15%  Similarity=-0.007  Sum_probs=43.5

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ...|+||++.+.   +|+.++|||.||..||..|+..+.+||+||..+..
T Consensus        14 ~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           14 EFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             TTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             heECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            478999999999   99999999999999999999988899999988754

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.92  E-value=6.1e-10  Score=89.44  Aligned_cols=49  Identities=16%  Similarity=0.047  Sum_probs=44.6

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      +...|+||++.|.   +|+.++|||.||..||..|+..+.+||+||.++...
T Consensus        28 ~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           28 DEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             TTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             HhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            3578999999999   999999999999999999999888999999987653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.91  E-value=3.9e-10  Score=94.19  Aligned_cols=53  Identities=26%  Similarity=0.721  Sum_probs=44.6

Q ss_pred             CCccccccccccccC----CCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHV----GNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~----~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      ++...|+||++.+..    +...+.++|||.||..|+.+|++.+.+||+||..+..+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            445789999999873    12348889999999999999999999999999988654

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.90  E-value=5.7e-10  Score=82.15  Aligned_cols=47  Identities=21%  Similarity=0.385  Sum_probs=41.3

Q ss_pred             CccccccccccccCCCceeee--CCCCc-cChhhHHHHHhcCCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVGNEVRGL--PCAHN-FHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      ++..|.||++...   ++..+  ||||. ||..|+..|.+.+..||+||+++.
T Consensus         7 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            3468999999987   66766  99999 899999999998889999999874

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.88  E-value=1.1e-09  Score=87.64  Aligned_cols=48  Identities=17%  Similarity=0.049  Sum_probs=44.2

Q ss_pred             ccccccccccccCCCceeeeCCC-CccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCA-HNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      +..|+||++.|.   +|+.++|| |.||..||..|+..+.+||+||.++...
T Consensus        22 ~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           22 EFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             hcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            478999999999   99999999 9999999999999888999999988654

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.86  E-value=7.9e-10  Score=90.89  Aligned_cols=46  Identities=33%  Similarity=0.721  Sum_probs=41.8

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~  280 (382)
                      ..|+||++.+.   +++.++|||.||..||..|+.. ..+||+||..+..
T Consensus        24 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           24 ISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             TBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            68999999998   8888999999999999999986 6789999998754

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.85  E-value=9.7e-10  Score=80.61  Aligned_cols=47  Identities=15%  Similarity=0.376  Sum_probs=41.0

Q ss_pred             CccccccccccccCCCceeee--CCCCc-cChhhHHHHHhcCCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVGNEVRGL--PCAHN-FHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      ....|.||++...   ++..+  ||||. ||..|+..|.+.+..||+||+++.
T Consensus         6 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            3468999999877   66666  99998 999999999988889999999874

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.84  E-value=3.3e-09  Score=81.19  Aligned_cols=52  Identities=27%  Similarity=0.606  Sum_probs=40.1

Q ss_pred             CCccccccccccccCCCceeeeC--CCCccChhhHHHHHh-cCCCCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLP--CAHNFHIECIDEWLR-LNVKCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~  281 (382)
                      +++..|+||++.+... .+..+|  |||.||..|+..++. ....||.||..+...
T Consensus         9 ~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            9 EDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             ccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            4457899999988532 334444  999999999999875 356799999988654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.83  E-value=1e-09  Score=93.58  Aligned_cols=50  Identities=16%  Similarity=0.327  Sum_probs=43.2

Q ss_pred             CCCccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC-CCcccCccCCC
Q 016797          228 PTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFP  280 (382)
Q Consensus       228 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~i~~  280 (382)
                      .++...|+||++.+.   +++.++|||.||..||..|+.... +||+||.++..
T Consensus        28 l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           28 LEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            345579999999998   888999999999999999998654 89999997643

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.83  E-value=1.8e-09  Score=106.11  Aligned_cols=48  Identities=31%  Similarity=0.773  Sum_probs=43.0

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~~  281 (382)
                      ...|+||++.+.   .++.+||||.||..|+..|+. .+.+||+||..+...
T Consensus       332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            368999999997   899999999999999999998 678999999988643

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.79  E-value=4e-09  Score=86.85  Aligned_cols=44  Identities=25%  Similarity=0.635  Sum_probs=40.0

Q ss_pred             cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..|+||++.+.   +++.+ +|||.||..||..|+.  ..||+||..+..
T Consensus        23 ~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (117)
T 1jm7_B           23 LRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (117)
T ss_dssp             TSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             CCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence            68999999998   88888 9999999999999987  789999998743

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.79  E-value=4.7e-09  Score=98.60  Aligned_cols=49  Identities=20%  Similarity=0.140  Sum_probs=42.9

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcC-CCCcccCccCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP  280 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~  280 (382)
                      .+...|+||++.+.   +|+.+||||+||..||..|+..+ .+||+||.++..
T Consensus       206 ~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          206 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            34578999999999   99999999999999999999864 459999988854

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.78  E-value=1.6e-09  Score=81.96  Aligned_cols=42  Identities=26%  Similarity=0.592  Sum_probs=38.1

Q ss_pred             cccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..|+||++.+.   +++.+||||. ||..|+..|    ..||+||..+..
T Consensus        25 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           25 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             TBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            68999999988   8999999999 999999988    789999988753

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.68  E-value=1.3e-08  Score=90.02  Aligned_cols=49  Identities=20%  Similarity=0.131  Sum_probs=43.0

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcC-CCCcccCccCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP  280 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~  280 (382)
                      .+...|+||++.|.   +|+.+||||+||..||..|+..+ .+||+||.++..
T Consensus       104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            45679999999999   89999999999999999999864 479999988754

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=1.3e-08  Score=75.67  Aligned_cols=48  Identities=25%  Similarity=0.542  Sum_probs=40.1

Q ss_pred             CCCCccccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCCC
Q 016797          227 VPTDCSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       227 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      ..++...|.||++...   .++.+||||. ||..|+..    ...||+||..+...
T Consensus        11 ~~~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             SCCCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             cCCCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            3445678999999987   8999999999 99999984    47899999988643

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.1e-08  Score=81.04  Aligned_cols=45  Identities=24%  Similarity=0.554  Sum_probs=39.6

Q ss_pred             CccccccccccccCCCceeeeC-CCCccChhhHHHHHhcC------CCCcc--cCcc
Q 016797          230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLN------VKCPR--CRCS  277 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~------~~CP~--CR~~  277 (382)
                      ++..|+||++.|.   +|+.++ |||.||..||..|+..+      .+||+  |+..
T Consensus         6 ~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            3478999999999   899996 99999999999999754      48999  9865

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.62  E-value=1.3e-08  Score=89.19  Aligned_cols=50  Identities=36%  Similarity=0.653  Sum_probs=43.4

Q ss_pred             CCccccccccccccCCCceeeeCCCCccChhhHHHHHhcC-CCCcccCccCCCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFPN  281 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~~  281 (382)
                      .+...|+||++.+.   .++.++|||.||..|+..|+... .+||.||..+...
T Consensus        16 ~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            44579999999998   78889999999999999999764 4899999988654

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=2.2e-08  Score=75.80  Aligned_cols=42  Identities=26%  Similarity=0.595  Sum_probs=36.9

Q ss_pred             cccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..|+||++.+.   +++.+||||. ||..|+..    ...||+||.++..
T Consensus        26 ~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           26 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence            57999999987   8899999999 99999964    3789999998854

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.51  E-value=2.4e-08  Score=76.58  Aligned_cols=42  Identities=31%  Similarity=0.597  Sum_probs=37.4

Q ss_pred             cccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..|.||++...   +++.+||||. ||..|+..|    ..||+||..+..
T Consensus        19 ~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           19 MLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             TBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            58999999988   8999999999 999999876    489999998754

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.50  E-value=2.8e-08  Score=95.15  Aligned_cols=51  Identities=24%  Similarity=0.615  Sum_probs=39.1

Q ss_pred             CCccccccccccccC-CCce----eeeCCCCccChhhHHHHHhcC-----------CCCcccCccCC
Q 016797          229 TDCSECPICLEEFHV-GNEV----RGLPCAHNFHIECIDEWLRLN-----------VKCPRCRCSVF  279 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~-~~~~----~~lpC~H~Fh~~Ci~~wl~~~-----------~~CP~CR~~i~  279 (382)
                      +...+|+||++.+.. ++-+    ...+|||.||..|+.+|++..           .+||+||+++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            345689999999886 3222    234699999999999999742           35999998774

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.31  E-value=4.1e-07  Score=65.85  Aligned_cols=48  Identities=33%  Similarity=0.680  Sum_probs=37.3

Q ss_pred             CCccccccccccccCCCceeeeCCC--C---ccChhhHHHHHhc--CCCCcccCccCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPCA--H---NFHIECIDEWLRL--NVKCPRCRCSVF  279 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC~--H---~Fh~~Ci~~wl~~--~~~CP~CR~~i~  279 (382)
                      ++...|.||++...   +...+||.  |   .||..|+.+|+..  +.+||+||..+.
T Consensus         4 ~~~~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            34578999999742   34578954  4   8999999999974  578999998764

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.31  E-value=1.9e-07  Score=67.87  Aligned_cols=47  Identities=9%  Similarity=-0.000  Sum_probs=42.4

Q ss_pred             cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      ..|+||++.+.   +++.+ +|||+|.+.||.+|++.+.+||+++.++...
T Consensus         4 ~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            57999999998   88998 8999999999999999888999999887543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.31  E-value=1.5e-07  Score=91.63  Aligned_cols=43  Identities=30%  Similarity=0.646  Sum_probs=38.5

Q ss_pred             ccccccccccccCCCceeeeCCCCc-cChhhHHHHHhcCCCCcccCccCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      +..|+||++.+.   .++.+||||. ||..|+..|    ..||+||..+..
T Consensus       295 ~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          295 ERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             TCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             CCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            368999999998   8999999999 999999987    689999998753

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.28  E-value=2.9e-07  Score=72.56  Aligned_cols=47  Identities=28%  Similarity=0.700  Sum_probs=36.4

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhc--------CCCCcc--cCcc
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--------NVKCPR--CRCS  277 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~--CR~~  277 (382)
                      ...|+||++.+...+.....+|||.||..|+..++..        ...||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4689999999874333333479999999999999863        236999  9977

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.21  E-value=4.9e-07  Score=83.88  Aligned_cols=47  Identities=26%  Similarity=0.472  Sum_probs=40.1

Q ss_pred             ccccccccccccCCCceeee-CCCCccChhhHHHHHhcC--CCCcc--cCccCCC
Q 016797          231 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLN--VKCPR--CRCSVFP  280 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~--~~CP~--CR~~i~~  280 (382)
                      +..|+||++.|.   .|+.. .|||.||..||..|++.+  .+||+  ||..+..
T Consensus       181 el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          181 ELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             eeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            458999999998   88875 899999999999999864  46999  9987643

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.92  E-value=5.9e-06  Score=65.06  Aligned_cols=46  Identities=26%  Similarity=0.440  Sum_probs=38.2

Q ss_pred             ccccccccccCCCceeeeCCCCccChhhHHHHHh-cCCCCcccCccCCC
Q 016797          233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP  280 (382)
Q Consensus       233 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~i~~  280 (382)
                      -|.+|--.+.  ...+.+||+|+||.+|+..|.+ ..++||.|+.++..
T Consensus         3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            4888877776  3678899999999999999975 46789999998753

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.44  E-value=7.4e-05  Score=68.88  Aligned_cols=48  Identities=23%  Similarity=0.638  Sum_probs=38.5

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC--CCcccCccCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV--KCPRCRCSVFP  280 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~~i~~  280 (382)
                      ...|.||.+....|..+.  .|+|.||..|+..|++.+.  .||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            468999999998654332  2999999999999998654  89999987643

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.71  E-value=0.081  Score=41.29  Aligned_cols=32  Identities=16%  Similarity=0.401  Sum_probs=24.9

Q ss_pred             ccccccccccccCCCceee--eCCCCccChhhHHHH
Q 016797          231 CSECPICLEEFHVGNEVRG--LPCAHNFHIECIDEW  264 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~--lpC~H~Fh~~Ci~~w  264 (382)
                      +..|.||.+.+..  +++.  +.|+|.||..|+..+
T Consensus         3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence            3689999986431  4444  889999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=90.79  E-value=0.19  Score=36.48  Aligned_cols=46  Identities=24%  Similarity=0.474  Sum_probs=31.4

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcCC----CCcccCccC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCSV  278 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~i  278 (382)
                      ....|.||.+.   ++-..--.|...||..|+...+....    .||.|+...
T Consensus        11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            44689999753   22222223889999999988776433    499997654

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=85.36  E-value=0.74  Score=34.82  Aligned_cols=31  Identities=23%  Similarity=0.524  Sum_probs=22.3

Q ss_pred             CccccccccccccCCCceeeeC---CCCccChhhHHHH
Q 016797          230 DCSECPICLEEFHVGNEVRGLP---CAHNFHIECIDEW  264 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~w  264 (382)
                      .+..|.||-.- .   .-.++|   |+-+||..|+++.
T Consensus        14 ~D~~C~VC~~~-t---~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVCEVW-T---AESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTTCCC-C---SSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCcccCccccc-c---ccceeccccccccccHhhcccc
Confidence            45789999643 2   223344   7899999999996

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=81.80  E-value=0.35  Score=35.66  Aligned_cols=53  Identities=21%  Similarity=0.439  Sum_probs=33.3

Q ss_pred             cCCCCccccccccccccCCCceeee-CCCCccChhhHHHHHhc----CCCCcccCccCC
Q 016797          226 AVPTDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL----NVKCPRCRCSVF  279 (382)
Q Consensus       226 ~~~~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~----~~~CP~CR~~i~  279 (382)
                      +...+...|.||..... ++..+.- .|...||..|+..-...    .-.||.|+..+.
T Consensus        13 ~~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           13 EWGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             SSSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             ccCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence            33344567999987753 2223332 38888999998654432    335999986553

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=80.60  E-value=0.46  Score=33.85  Aligned_cols=49  Identities=22%  Similarity=0.435  Sum_probs=32.1

Q ss_pred             CCccccccccccccCCCceeee-CCCCccChhhHHHHHh-----cCCCCcccCcc
Q 016797          229 TDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR-----LNVKCPRCRCS  277 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~-----~~~~CP~CR~~  277 (382)
                      ++...|++|...+..+...+.- .|..-||..|+.--..     ....||.|+.+
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            3456799999887544333333 3888899999753321     24469999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	382
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	8e-17
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-14
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	6e-13
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	6e-12
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-11
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	9e-11
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	2e-10
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	3e-10
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	5e-10
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	4e-08
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	4e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	5e-08
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	5e-07
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	7e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	6e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 71.8 bits (176), Expect = 8e-17
 Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSV 278
           D  EC +CL E   G E R LP C H FH EC+D WL  +  CP CR +V
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 66.1 bits (161), Expect = 1e-14
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 278
            CPICLE+    N    LPC H F   CI  W+R N  CP C+  V
Sbjct: 7   RCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 6e-13
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 227 VPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSV 278
           + +    C IC E      +V+  PC H     C+  W       CP CRC +
Sbjct: 19  MGSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 6e-12
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 6/55 (10%)

Query: 233 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSAL 287
            C  C  E       + LPC H     C++      ++CP C+       D  AL
Sbjct: 8   RCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGADTPAL 56

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 229 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWL--------RLNVKCPRCRCSVFP 280
           +  S C +CL E+ V        C   F   C+ +++           + CP   C    
Sbjct: 3   SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62

Query: 281 NLDLSALSNLRTAD 294
           +L  + +  +  A+
Sbjct: 63  HLQENEIECMVAAE 76

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 9e-11
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 233 ECPICLEEFHVGNEV-RGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN 281
           ECP+C+E   + +       C +     C        N  CP CR     +
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 2e-10
 Identities = 14/61 (22%), Positives = 15/61 (24%), Gaps = 15/61 (24%)

Query: 230 DCSECPICLEEFH---------------VGNEVRGLPCAHNFHIECIDEWLRLNVKCPRC 274
               C IC                        V    C H FH  CI  WL+    CP  
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

Query: 275 R 275
            
Sbjct: 80  N 80

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 3e-10
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 232 SECPICLEEFHVGNEVRGL--PCAHNFHIECIDEWLRLN-VKCPRCRCSVFPN 281
             CP C    +    ++ +   C H     C+D         CP C   +  +
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 5e-10
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 15/81 (18%)

Query: 204 LTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDE 263
           L+A + E V+ +I  + K           ECPICLE      E     C H F   C+ +
Sbjct: 3   LSALRVEEVQNVINAMQKIL---------ECPICLELI---KEPVSTKCDHIFCKFCMLK 50

Query: 264 WL---RLNVKCPRCRCSVFPN 281
            L   +   +CP C+  +   
Sbjct: 51  LLNQKKGPSQCPLCKNDITKR 71

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 4e-08
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 21/80 (26%)

Query: 217 QELPKFRLKAVPTDCSE-CPICLEEFHVGNE---------------VRGLPCAHNFHIEC 260
           +++ +   + +     E C IC+E+  V +                 R   C+H FH+ C
Sbjct: 10  EQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLC 69

Query: 261 IDEWLR-----LNVKCPRCR 275
           +           +++CP C+
Sbjct: 70  LLAMYCNGNKDGSLQCPSCK 89

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 47.5 bits (112), Expect = 4e-08
 Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 230 DCSECPICLEEFHVGNEV--RGLPCAHNFHIECIDEWLRLN--VKCPRCR 275
           D   C IC EE                N H  C+  WL ++    C  C 
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN 281
           C IC        +     C H F   CI   L++    CP CR   FP 
Sbjct: 26  CQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 17/78 (21%)

Query: 204 LTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDE 263
             A  R A++ L + L              C  C         +    C H F   C+ +
Sbjct: 8   AWAHSRAALDRLEKLL-------------RCSRCTNILREPVCL--GGCEHIFCSNCVSD 52

Query: 264 WLRLNVKCPRCRCSVFPN 281
              +   CP C    +  
Sbjct: 53  C--IGTGCPVCYTPAWIQ 68

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.6 bits (97), Expect = 7e-06
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 3/60 (5%)

Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTA 293
           CPI LE      +   +     +    I +WL    K          +  L+    L++ 
Sbjct: 11  CPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSL 67

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 6e-04
 Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 2/42 (4%)

Query: 234 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 275
           C I  +       V        F    ++++++     P   
Sbjct: 3   CAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITN 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	382
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.54
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.36
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.3
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.24
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.24
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.2
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.2
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.17
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.16
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.13
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.07
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.95
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.94
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.93
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.85
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.65
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.24
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	88.46
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	87.48
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	84.38

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.54  E-value=1.6e-15  Score=106.98  Aligned_cols=50  Identities=50%  Similarity=1.096  Sum_probs=45.3

Q ss_pred             CccccccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      ++.+|+||++++..++.+..++ |+|.||..|+.+|++.+.+||+||.++.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4468999999999988888876 9999999999999999999999998763

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.36  E-value=1.5e-13  Score=101.06  Aligned_cols=47  Identities=45%  Similarity=0.997  Sum_probs=41.5

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      .++|+||++.+.  +.++.+||||.||..|+.+|++.+.+||+||.++.
T Consensus         5 ~d~C~IC~~~~~--~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           5 AERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCccCCcCcc--CCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            468999999986  34577899999999999999999999999998764

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.3e-13  Score=99.56  Aligned_cols=49  Identities=31%  Similarity=0.743  Sum_probs=42.6

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPNL  282 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~~  282 (382)
                      ...|+||++.+.   +++.+||||.||..||..|+.. +++||+||..+....
T Consensus        23 ~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBC---CEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCC---CeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            357999999988   8999999999999999999974 567999999986543

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.1e-12  Score=99.63  Aligned_cols=50  Identities=28%  Similarity=0.520  Sum_probs=41.4

Q ss_pred             CccccccccccccCCC---------------ceeeeCCCCccChhhHHHHHhcCCCCcccCccCC
Q 016797          230 DCSECPICLEEFHVGN---------------EVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF  279 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~  279 (382)
                      .++.|+||++.+....               .+..++|||.||..||.+|++.+.+||+||++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            3467999998875422               2567889999999999999999999999998763

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.2e-12  Score=90.81  Aligned_cols=48  Identities=25%  Similarity=0.510  Sum_probs=40.1

Q ss_pred             ccccccccccCCCc-eeeeCCCCccChhhHHHHHhc-CCCCcccCccCCC
Q 016797          233 ECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP  280 (382)
Q Consensus       233 ~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~  280 (382)
                      +|+||++++..++. +..++|||.||..|+.+|++. +.+||+||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            79999999976544 456689999999999999985 4579999988753

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.2e-12  Score=92.24  Aligned_cols=51  Identities=20%  Similarity=0.417  Sum_probs=40.2

Q ss_pred             ccccccccccccCCC--ceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCC
Q 016797          231 CSECPICLEEFHVGN--EVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~--~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~  281 (382)
                      +..|+||++.+..+.  ....++|||.||..||..|+.. +.+||+||+++..+
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            478999999864332  3456789999999999999965 55799999988543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.5e-12  Score=91.71  Aligned_cols=49  Identities=24%  Similarity=0.550  Sum_probs=41.6

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhcCCCCcccCccCCCCCccc
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLS  285 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~~~~  285 (382)
                      ..+|+||++.+.   +++.+||||.||..|+++|   +.+||+||.++....+.+
T Consensus         6 ~l~C~IC~~~~~---~p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           6 FLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSSCC
T ss_pred             CCCCcccCcccC---CCEEecCCCHHhHHHHHcC---CCcCcCCCCcccCCCCCC
Confidence            368999999998   8899999999999999765   568999999997665443

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.5e-11  Score=99.19  Aligned_cols=51  Identities=27%  Similarity=0.601  Sum_probs=39.9

Q ss_pred             ccccccccccccCC---------------CceeeeCCCCccChhhHHHHHhcC-----CCCcccCccCCCC
Q 016797          231 CSECPICLEEFHVG---------------NEVRGLPCAHNFHIECIDEWLRLN-----VKCPRCRCSVFPN  281 (382)
Q Consensus       231 ~~~C~IC~~~~~~~---------------~~~~~lpC~H~Fh~~Ci~~wl~~~-----~~CP~CR~~i~~~  281 (382)
                      ++.|+||++.+...               .....++|||.||..||..|++.+     .+||+||..+..+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            46899999988532               234667899999999999999743     4799999877443

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=3.8e-12  Score=89.65  Aligned_cols=46  Identities=11%  Similarity=0.069  Sum_probs=41.9

Q ss_pred             ccccccccccCCCceeeeC-CCCccChhhHHHHHhcCCCCcccCccCCCC
Q 016797          233 ECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPN  281 (382)
Q Consensus       233 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~~  281 (382)
                      .|+||++.++   +++.++ |||.||+.||.+|++++.+||+||.++...
T Consensus         2 ~C~Ic~~~~~---~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchHH---hcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            5999999998   888886 999999999999999999999999987654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=5.4e-12  Score=96.59  Aligned_cols=47  Identities=32%  Similarity=0.709  Sum_probs=41.5

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN  281 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~~  281 (382)
                      ..|+||++.+.   +++.++|||.||..||.+|++. +.+||.||.++.+.
T Consensus        24 l~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          24 ISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (86)
T ss_dssp             TBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cCCccCCcchh---cceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChh
Confidence            58999999998   8999999999999999999974 56799999887543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3e-11  Score=95.67  Aligned_cols=46  Identities=35%  Similarity=0.716  Sum_probs=40.6

Q ss_pred             cccccccccccCCCceeeeCCCCccChhhHHHHHhcCC---CCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV---KCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~i~~  280 (382)
                      ..|+||++.+.   +++.++|||.||..||..|++.+.   .||.||.++..
T Consensus        22 l~CpIC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          22 LECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             TSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             cCCCccCchhC---CeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            57999999998   888999999999999999997643   69999988753

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.8e-10  Score=88.97  Aligned_cols=44  Identities=25%  Similarity=0.635  Sum_probs=37.7

Q ss_pred             cccccccccccCCCceeee-CCCCccChhhHHHHHhcCCCCcccCccCCC
Q 016797          232 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP  280 (382)
Q Consensus       232 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~i~~  280 (382)
                      ..|+||++.+.   .++.+ +|||.||..||.+|+.  ..||.||.++..
T Consensus        23 l~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          23 LRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             TSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             CCCccCCchhh---cCceeCCCCCchhHHHHHHHHh--ccccccCCcCch
Confidence            58999999998   67665 7999999999999985  469999987754

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2.6e-10  Score=85.93  Aligned_cols=48  Identities=21%  Similarity=0.160  Sum_probs=42.3

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhc-CCCCcccCccCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP  280 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~i~~  280 (382)
                      ++..|+||++.|.   +|+.++|||.||..||.+|+.. +.+||.||.++..
T Consensus         6 ~~l~CpIc~~l~~---dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           6 DYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             STTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             ccccCcCcCchhh---hhcccCCcCeecHHHHHHHHhcCCccCCCccccccc
Confidence            4578999999999   8999999999999999999975 5579999988754

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.93  E-value=3.2e-10  Score=84.95  Aligned_cols=49  Identities=20%  Similarity=0.529  Sum_probs=43.2

Q ss_pred             CccccccccccccCCCceeeeCCCCccChhhHHHHHhcC-CCCcccCccCCCC
Q 016797          230 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFPN  281 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~i~~~  281 (382)
                      ++..|+||++.|.   +++.++|||.||..||..|++.+ ..||.|+.++...
T Consensus         7 ~~l~CpIc~~~m~---dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           7 EYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCcCcCchhh---CceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            4578999999998   89999999999999999999764 5699999887654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.85  E-value=8.4e-10  Score=78.39  Aligned_cols=48  Identities=33%  Similarity=0.646  Sum_probs=37.4

Q ss_pred             CCccccccccccccCCCceeeeCC-----CCccChhhHHHHHh--cCCCCcccCccCC
Q 016797          229 TDCSECPICLEEFHVGNEVRGLPC-----AHNFHIECIDEWLR--LNVKCPRCRCSVF  279 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lpC-----~H~Fh~~Ci~~wl~--~~~~CP~CR~~i~  279 (382)
                      ++...|.||++.+.   .....||     +|.||..||..|+.  .+.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~---~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCC---CceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            44578999999876   3344454     59999999999985  4568999998764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=7.9e-09  Score=80.67  Aligned_cols=49  Identities=16%  Similarity=0.055  Sum_probs=43.7

Q ss_pred             ccccccccccccCCCceeeeCCCC-ccChhhHHHHHhcCCCCcccCccCCCCC
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAH-NFHIECIDEWLRLNVKCPRCRCSVFPNL  282 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~~~~~CP~CR~~i~~~~  282 (382)
                      +..|+||.+.|.   +|+.++|+| .|++.||.+|+..+.+||+||.++....
T Consensus        22 ~f~CPI~~~lm~---dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~   71 (98)
T d1wgma_          22 EFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ   71 (98)
T ss_dssp             TTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred             HhCCcCchhHHH---HHHhcccccchhhHHHHHHHHHhcCCcccccccccchh
Confidence            479999999999   999999765 7999999999999999999999886543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.7e-07  Score=72.01  Aligned_cols=46  Identities=28%  Similarity=0.720  Sum_probs=36.4

Q ss_pred             ccccccccccccCCCceeeeCCCCccChhhHHHHHhc-----C---CCCcccCc
Q 016797          231 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-----N---VKCPRCRC  276 (382)
Q Consensus       231 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----~---~~CP~CR~  276 (382)
                      ..+|+||++++...+.+..++|+|.||..|+..|++.     .   -+||.|+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4689999999875555666789999999999999852     1   25998754

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.14  Score=36.72  Aligned_cols=32  Identities=25%  Similarity=0.656  Sum_probs=24.0

Q ss_pred             CCccccccccccccCCCceeeeC---CCCccChhhHHHH
Q 016797          229 TDCSECPICLEEFHVGNEVRGLP---CAHNFHIECIDEW  264 (382)
Q Consensus       229 ~~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~w  264 (382)
                      ..+..|.|| +.+.   .-.++|   |+.+||..|+++.
T Consensus        13 ~~D~mC~vC-~v~t---~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          13 VNDEMCDVC-EVWT---AESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTT-CCCC---SSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CcCcccccc-Cccc---ccceecceeecchhhHHHHHHh
Confidence            345789999 6665   333446   6889999999987

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.48  E-value=0.11  Score=33.71  Aligned_cols=43  Identities=23%  Similarity=0.569  Sum_probs=28.2

Q ss_pred             ccccccccccCCCceeee-CCCCccChhhHHHHHhcCC----CCcccCc
Q 016797          233 ECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNV----KCPRCRC  276 (382)
Q Consensus       233 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~  276 (382)
                      .|.||...-.. +....- .|...||..|+..-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~-~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCC-CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            58889765432 222222 3888999999988665322    4999974

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.38  E-value=0.11  Score=35.51  Aligned_cols=48  Identities=23%  Similarity=0.463  Sum_probs=32.6

Q ss_pred             CccccccccccccCCCceeeeC-CCCccChhhHHHHHh-----cCCCCcccCcc
Q 016797          230 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLR-----LNVKCPRCRCS  277 (382)
Q Consensus       230 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~  277 (382)
                      ....|.+|.+....++..+.-. |+..||..|+..-..     .+-.||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            3468999998876555444333 899999999853211     23469999753